BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (711 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 763 0.0 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 733 0.0 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 689 0.0 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 688 0.0 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 683 0.0 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 679 0.0 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 679 0.0 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 677 0.0 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 666 0.0 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 655 0.0 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 654 0.0 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 650 0.0 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 649 0.0 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 642 0.0 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 641 0.0 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 638 0.0 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 633 e-180 UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Ta... 632 e-179 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 629 e-178 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 627 e-178 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 627 e-178 UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Ta... 624 e-177 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 621 e-176 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 621 e-176 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 617 e-175 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 613 e-174 UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Ta... 613 e-173 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 607 e-172 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 605 e-171 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 602 e-170 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 600 e-170 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 600 e-170 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 598 e-169 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 597 e-169 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 597 e-169 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 592 e-167 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 584 e-165 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 577 e-163 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 576 e-162 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 573 e-162 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 571 e-161 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 566 e-159 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 558 e-157 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 557 e-157 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 556 e-156 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 553 e-155 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 541 e-152 UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 T... 539 e-151 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 539 e-151 UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G... 528 e-148 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 528 e-148 UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 T... 528 e-148 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 517 e-145 UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 T... 516 e-144 UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms Rep... 514 e-144 UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 T... 512 e-143 UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragm... 506 e-141 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 504 e-141 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 491 e-137 UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Ta... 487 e-136 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 482 e-134 UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Ta... 478 e-133 UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mit... 464 e-129 UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 464 e-129 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 461 e-128 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 459 e-127 UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 T... 457 e-127 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 455 e-126 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 434 e-120 UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 431 e-119 UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG... 430 e-119 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 418 e-115 UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putat... 414 e-114 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 394 e-108 UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 T... 391 e-107 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 388 e-106 UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichop... 373 e-101 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 338 6e-91 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 337 7e-91 UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 ... 330 1e-88 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 323 2e-86 UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis R... 256 2e-66 UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun se... 254 9e-66 UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornu... 241 8e-62 UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylas... 171 7e-41 UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragm... 167 1e-39 UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylas... 146 2e-33 UniRef50_Q0PQM6 Polyribonucleotide nucleotidyltransferase (Fragm... 133 3e-29 UniRef50_UPI0001AF367B BCCT transporter n=2 Tax=Pseudomonas syri... 109 4e-22 UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=A... 103 3e-20 UniRef50_UPI0001909761 polynucleotide phosphorylase/polyadenylas... 86 3e-15 UniRef50_P37560 Uncharacterized protein yabR n=35 Tax=Firmicutes... 84 2e-14 UniRef50_B0PAJ2 Putative uncharacterized protein n=6 Tax=Bacteri... 83 4e-14 UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacill... 81 1e-13 UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacill... 80 2e-13 UniRef50_Q03SZ4 RNA binding protein (S1 domain) n=105 Tax=Firmic... 80 2e-13 UniRef50_A8MK30 RNA binding S1 domain protein n=32 Tax=Firmicute... 80 3e-13 UniRef50_Q724J5 RNA-binding protein n=80 Tax=Firmicutes RepID=Q7... 79 7e-13 UniRef50_A6CB07 30S ribosomal protein S1 n=1 Tax=Planctomyces ma... 79 9e-13 UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 78 2e-12 UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8... 77 3e-12 UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridiu... 76 4e-12 UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium ... 76 4e-12 UniRef50_C4G9K7 Putative uncharacterized protein n=1 Tax=Shuttle... 76 4e-12 UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=... 76 4e-12 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 76 5e-12 UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes Rep... 76 5e-12 UniRef50_C1ZHL8 Ribosomal protein S1 n=1 Tax=Planctomyces limnop... 76 6e-12 UniRef50_Q1WSG8 S1-type RNA-binding domain n=18 Tax=Firmicutes R... 75 6e-12 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 75 8e-12 UniRef50_A2FJA8 S1 RNA binding domain containing protein n=1 Tax... 75 8e-12 UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=... 75 9e-12 UniRef50_A6LQP2 RNA binding S1 domain protein n=7 Tax=Clostridiu... 75 1e-11 UniRef50_UPI000034EEAC 3'''' exoribonuclease family domain 1 pro... 75 1e-11 UniRef50_B8I046 RNA binding S1 domain protein n=13 Tax=Clostridi... 75 1e-11 UniRef50_C1SJZ4 Transcriptional accessory protein n=1 Tax=Denitr... 75 1e-11 UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL 75 1e-11 UniRef50_D1Y3S9 30S ribosomal protein S1 n=1 Tax=Pyramidobacter ... 75 1e-11 UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus ... 75 1e-11 UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=... 74 1e-11 UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 74 1e-11 UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7... 74 2e-11 UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=... 74 2e-11 UniRef50_A9KQA3 RNA binding S1 domain protein n=1 Tax=Clostridiu... 74 2e-11 UniRef50_P80870 General stress protein 13 n=12 Tax=Bacillales Re... 74 3e-11 UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergista... 74 3e-11 UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 73 4e-11 UniRef50_B1YKU0 RNA binding S1 domain protein n=3 Tax=Bacillales... 73 4e-11 UniRef50_A5D5X0 Predicted RNA binding protein n=5 Tax=Firmicutes... 73 4e-11 UniRef50_A9SG12 Predicted protein n=1 Tax=Physcomitrella patens ... 73 4e-11 UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1... 72 6e-11 UniRef50_C9LM60 S1 RNA-binding domain protein n=1 Tax=Dialister ... 72 6e-11 UniRef50_UPI00016C5864 30S ribosomal protein S1 n=1 Tax=Gemmata ... 72 7e-11 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 72 9e-11 UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensi... 72 1e-10 UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 71 1e-10 UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent ... 71 1e-10 UniRef50_D1BMA5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 71 1e-10 UniRef50_A5V0B5 RNA binding S1 domain protein n=3 Tax=Chloroflex... 71 1e-10 UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3... 70 2e-10 UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphil... 70 2e-10 UniRef50_D2C8C2 RNA binding S1 domain protein n=9 Tax=Thermotoga... 70 2e-10 UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1... 70 2e-10 UniRef50_C5RED5 RNA binding S1 domain protein n=1 Tax=Clostridiu... 70 2e-10 UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 70 4e-10 UniRef50_D2R2F1 RNA binding S1 domain protein n=1 Tax=Pirellula ... 69 4e-10 UniRef50_D1B691 RNA binding S1 domain protein n=1 Tax=Thermanaer... 69 5e-10 UniRef50_UPI00016C0B56 30S ribosomal protein S1 n=1 Tax=Epulopis... 69 5e-10 UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4... 69 8e-10 UniRef50_A9B5U0 RNA binding S1 domain protein n=1 Tax=Herpetosip... 69 8e-10 UniRef50_B8HZ35 RNA binding S1 domain protein n=18 Tax=Bacteria ... 69 8e-10 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 69 9e-10 UniRef50_C5NX49 30S ribosomal protein S1 n=1 Tax=Gemella haemoly... 68 1e-09 UniRef50_UPI00016BFB5D hypothetical protein Epulo_08978 n=1 Tax=... 68 1e-09 UniRef50_A4IQA6 30S ribosomal protein S1 n=10 Tax=Bacillaceae Re... 68 1e-09 UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceu... 68 1e-09 UniRef50_C1TKG4 Predicted RNA-binding protein with ribosomal pro... 68 1e-09 UniRef50_A4ISC1 Polyribonucleotide nucleotidyltransferase, gener... 68 1e-09 UniRef50_B2UME1 Ribosomal protein S1 n=6 Tax=Chlamydiae/Verrucom... 68 1e-09 UniRef50_Q0WVD2 Elongation factor Ts (Fragment) n=5 Tax=cellular... 68 1e-09 UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2... 67 2e-09 UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1... 67 2e-09 UniRef50_C2BIJ8 S1 domain RNA-binding protein n=2 Tax=Clostridia... 67 2e-09 UniRef50_A7GUA8 RNA binding S1 domain protein n=7 Tax=Bacillales... 67 2e-09 UniRef50_A4XIT7 RNA binding S1 domain protein n=1 Tax=Caldicellu... 67 2e-09 UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovib... 67 2e-09 UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 67 2e-09 UniRef50_A0RK95 General stress protein 13 n=90 Tax=Bacillales Re... 67 2e-09 UniRef50_C7H4V6 General stress protein 13 (Fragment) n=3 Tax=Fae... 67 2e-09 UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Con... 67 3e-09 UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helic... 67 3e-09 UniRef50_UPI0001B43B43 general stress protein 13 n=1 Tax=Listeri... 66 4e-09 UniRef50_C7RH14 RNA binding S1 domain protein n=4 Tax=Anaerococc... 66 4e-09 UniRef50_C9KMW6 RNA-binding protein n=3 Tax=Clostridiales RepID=... 66 5e-09 UniRef50_A9WBG5 RNA binding S1 domain protein n=2 Tax=Chloroflex... 66 6e-09 UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium... 66 6e-09 UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflex... 65 7e-09 UniRef50_D2RFP6 Translation initiation factor 2, alpha subunit n... 65 7e-09 UniRef50_A9ESM2 RpsA3 protein n=1 Tax=Sorangium cellulosum 'So c... 65 8e-09 UniRef50_D1B1Y3 Tex-like protein protein-like protein n=2 Tax=de... 65 8e-09 UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicycloba... 65 8e-09 UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=5... 65 9e-09 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 65 1e-08 UniRef50_D1PLC1 RNA-binding protein n=1 Tax=Subdoligranulum vari... 65 1e-08 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 65 1e-08 UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovib... 65 1e-08 UniRef50_C9KQS8 Protein YhgF n=1 Tax=Mitsuokella multacida DSM 2... 65 1e-08 UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteri... 65 1e-08 UniRef50_UPI00018508D5 general stress protein 13 n=1 Tax=Bacillu... 65 1e-08 UniRef50_C9XMD9 Putative 30S ribosomal protein S1 n=7 Tax=Clostr... 65 1e-08 UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomona... 65 1e-08 UniRef50_C6VRE1 Polyribonucleotide nucleotidyltransferase (Putat... 64 1e-08 UniRef50_Q0B0Q8 RNA binding S1 n=2 Tax=Firmicutes RepID=Q0B0Q8_S... 64 1e-08 UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobacu... 64 2e-08 UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Ver... 64 2e-08 UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonat... 64 2e-08 UniRef50_C3XIZ7 30s ribosomal protein s1 n=6 Tax=Campylobacteral... 64 2e-08 UniRef50_Q01BN8 Chloroplast polyprotein of elongation factor Ts ... 64 2e-08 UniRef50_C5VIF1 S1 RNA binding domain protein n=2 Tax=Bacteria R... 64 2e-08 UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflex... 64 2e-08 UniRef50_O29723 Translation initiation factor 2 subunit alpha n=... 64 2e-08 UniRef50_D2RKJ8 Hydroxymethylbutenyl pyrophosphate reductase n=3... 64 3e-08 UniRef50_B0S225 Polyribonucleotide nucleotidyltransferase n=2 Ta... 64 3e-08 UniRef50_Q46C78 Translation initiation factor 2 subunit alpha (A... 64 3e-08 UniRef50_A8Z6B9 Putative ribosomal protein S1 n=1 Tax=Candidatus... 64 3e-08 UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales Re... 63 3e-08 UniRef50_B8D058 RNA binding S1 domain protein n=60 Tax=cellular ... 63 3e-08 UniRef50_D1ICQ1 Whole genome shotgun sequence of line PN40024, s... 63 4e-08 UniRef50_B8CY92 CRISPR-associated RAMP protein, Cmr6 family n=1 ... 63 4e-08 UniRef50_B0MBX8 Putative uncharacterized protein n=7 Tax=Clostri... 63 4e-08 UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotoga... 63 4e-08 UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcace... 63 4e-08 UniRef50_Q0DZI0 Os02g0617700 protein (Fragment) n=3 Tax=Oryza sa... 63 5e-08 UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovib... 62 6e-08 UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Ta... 62 6e-08 UniRef50_Q7VJV6 Ribosomal protein S1 n=3 Tax=Helicobacter RepID=... 62 6e-08 UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium klu... 62 6e-08 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 62 7e-08 UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 ... 62 7e-08 UniRef50_Q72HU8 S1 domain protein n=8 Tax=Deinococci RepID=Q72HU... 62 8e-08 UniRef50_Q45388 Protein tex n=35 Tax=Proteobacteria RepID=TEX_BORPE 62 9e-08 UniRef50_D1C7V0 RNA binding S1 domain protein n=2 Tax=Chloroflex... 62 9e-08 UniRef50_C5S7U3 RNA binding S1 domain protein n=1 Tax=Allochroma... 62 1e-07 UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=can... 62 1e-07 UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q... 62 1e-07 UniRef50_Q1RJH1 30S ribosomal protein S1 n=16 Tax=Alphaproteobac... 61 1e-07 UniRef50_B6KTW9 S1 RNA-binding domain containing protein n=3 Tax... 61 2e-07 UniRef50_C6E3L9 RNA binding S1 domain protein n=10 Tax=Bacteria ... 61 2e-07 UniRef50_B4UDY4 RNA binding S1 domain protein n=4 Tax=Anaeromyxo... 61 2e-07 UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus... 61 2e-07 UniRef50_P46837 Protein yhgF n=748 Tax=cellular organisms RepID=... 60 2e-07 UniRef50_C4V2L6 Possible 30S ribosomal protein S1 n=2 Tax=Seleno... 60 3e-07 UniRef50_Q6BJC7 DEHA2G03410p n=4 Tax=Saccharomycetales RepID=Q6B... 60 3e-07 UniRef50_A9BJ06 RNA binding S1 domain protein n=3 Tax=Thermotoga... 60 3e-07 UniRef50_C9LUH9 Hydroxymethylbutenyl pyrophosphate reductase n=1... 60 3e-07 UniRef50_Q7UWH7 30S ribosomal protein S1 n=1 Tax=Rhodopirellula ... 60 3e-07 UniRef50_A6GGH5 Ribosomal protein S1 n=1 Tax=Plesiocystis pacifi... 60 4e-07 UniRef50_A9V260 Predicted protein n=1 Tax=Monosiga brevicollis R... 60 4e-07 UniRef50_B7GEU7 Predicted RNA binding protein (Contains ribosoma... 60 4e-07 UniRef50_D2MNP2 General stress protein 13 n=1 Tax=Bulleidia extr... 60 4e-07 UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thal... 59 5e-07 UniRef50_D1JBH6 Translation initiation factor 2, alpha subunit n... 59 5e-07 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 59 5e-07 UniRef50_B0CAN6 S1 RNA binding domain protein n=11 Tax=Bacteria ... 59 5e-07 UniRef50_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychro... 59 7e-07 UniRef50_Q9ZKF6 30S ribosomal protein S1 n=44 Tax=Epsilonproteob... 59 7e-07 UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succino... 59 8e-07 UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 59 8e-07 UniRef50_Q5JE49 Translation initiation factor 2 subunit alpha n=... 59 9e-07 UniRef50_C4R3F9 RNA binding protein with preference for single s... 59 9e-07 >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/692 (55%), Positives = 497/692 (71%), Gaps = 4/692 (0%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 + ++ +T+ETG +ARQA AV+ + +T V TVV K KP QDFFPLTVNYQE+T Sbjct: 8 EIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLTVNYQEKT 67 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 YA G+IPG +F+RE RPSE ETLI+RLIDRPIRPLF + + N+ QVI +V+ + + NPD Sbjct: 68 YAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQHDLENNPD 127 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 I++MI ASAAL+LSGIPF GPI ARVGY N YVLNPT DE+ ESKLDLVVAGTE AVL Sbjct: 128 ILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVAGTENAVL 187 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVA 247 MVESEA LSE+ MLGA+ FG + Q VI I +L + A K ++ PE ++ L + Sbjct: 188 MVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFSD-LEKTML 246 Query: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDET---LDENELGEILHAIEKNV 304 + E L AY ITDKQ+RY +D IK+E ++ E E L +++ + ++ + Sbjct: 247 KMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVFKRLQAKI 306 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 VR +L RIDGR+ +R + G+LPRTHGSALFTRGETQALV ATLGT+ D Q Sbjct: 307 VRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLGTSEDEQY 366 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D L G +TFL HYNFPP+SVGETG + SP RREIGHG+LA R + ++P + FPYT Sbjct: 367 VDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPTKEAFPYT 426 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +RVVSEITESNGSSSMA+VCG SLALMDAGVP+ VAGIAMGL+KEG+ +V+LSDILGD Sbjct: 427 IRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVILSDILGD 486 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 EDHLGDMDFKVAG+++GI++LQMDIKI+GIT++IM++AL QAK R HIL M +A+ Sbjct: 487 EDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEMAKALTDA 546 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 R ++SEF+PRI + I +KI++VIG GG VIR + E+TG I IEDDGT+KIA+ D + Sbjct: 547 RTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKIASPDTKS 606 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + A I I E EVG +Y G V + +FGAF+ G +GLVHISQ+A KRV K TD Sbjct: 607 IETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASKRVAKTTD 666 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 ++ G +V V+++ D +G+IRLS+K +Q+ Sbjct: 667 VVKEGDKVWVQLMGFDERGKIRLSMKVVDQQT 698 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/683 (53%), Positives = 492/683 (72%), Gaps = 1/683 (0%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 + Q+G T+TLETG +ARQA AV+ ++ +T V V + K GQDFFPLTV+YQE+ Sbjct: 8 EIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLTVHYQEKY 67 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 +++GRIPG FF+RE +E ETL++RLIDRPIRPLFPEGF NE+ VIA V+S + + PD Sbjct: 68 FSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSYDGENEPD 127 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 I+AMI ASAAL++SG+PF GPIGAARVGY + +Y+LNPT ++ LDLVVA T AV+ Sbjct: 128 ILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVAATHDAVM 187 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVA 247 MVESEA+ LSE+ MLGAV+F H+ Q VI+ I +L +++ K W+ P+ A ++ Sbjct: 188 MVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLSAAKTKLK 247 Query: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRS 307 L ++ AY++T+K R + ++ +++ A+ D+ +++ +E +VR+ Sbjct: 248 KLVGKDITAAYKLTNKSARSSALNEARAKA-KEAFADATPQDQMAAIKLVKKLEAEIVRT 306 Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 +L RIDGR+ +R + LPR HGSALFTRGETQ++ T TLGT Q++D Sbjct: 307 AILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKESEQMIDG 366 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV 427 L G R + F+ HYNFPPYSVGE G G+P RRE+GHG+LA R + AV+P ++FPYT+R+ Sbjct: 367 LNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEEFPYTIRL 426 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 S+ITESNGSSSMA+VCG SLA+MDAGVPIK V+GIAMGL+ EG ++ V+SDILGDEDH Sbjct: 427 TSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISDILGDEDH 486 Query: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 LGDMDFKVAG+ +GI+ +QMDIKI GIT+EI + AL QAK R HILG M +A++ R + Sbjct: 487 LGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKALDHTRTE 546 Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 +S APRI T+ + DKI+D+IG GG +IR + TG ++I+DDGTVKI+++D + + Sbjct: 547 LSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSSDTAQIEA 606 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 A I I AE EVG++YTGKV +VDFGAFV GGK+GLVH+S+I ++RVEKV D L Sbjct: 607 ARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEKVADALS 666 Query: 668 MGQEVPVKVLEVDRQGRIRLSIK 690 GQEV VKVLE+D +G++RLS++ Sbjct: 667 EGQEVKVKVLEIDNRGKVRLSMR 689 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/703 (50%), Positives = 487/703 (69%), Gaps = 4/703 (0%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 ++ T+++E G +A+QA+ A ++ DT V VG KK +PG DFFPLTVNY+E+ Y+ Sbjct: 10 EWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLTVNYEEKMYS 68 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 G++PG F +REGRPS+ TL ARLIDRPIRPLF EGF NEVQ+ +TV SV+ +P++ Sbjct: 69 VGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVDQDCSPEMA 128 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 AM+G+S AL +S IPF GPI VG I+ +YV+NPT ++ ++S + L VAGT A+ MV Sbjct: 129 AMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAGTYDAINMV 188 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E+ A+ +SE+ ML A++FGHE+ + + + +++ GK + + + + L A V A Sbjct: 189 EAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPELEAEVKAA 248 Query: 250 AEARLSDAYRITDKQERYAQVDVIKSETIATLLA---EDETLDENELGEILHAIEKNVVR 306 +E ++ A + +K+ R A ++ +K E + + A E+E +E+ IL IEK+ +R Sbjct: 249 SEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHILEMIEKDEMR 308 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + + R DGR+ + IR L G+LPR HGS LFTRG+TQAL TL R+ Q++D Sbjct: 309 RLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAPLREHQIID 368 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 L E F+ HYNFP +SVGETG +P RREIGHG L +R + V+P ++FPYT+R Sbjct: 369 GLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIR 428 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 +VSE+ ESNGSSS AS+CG++LA++DAGVPIKA VAGIAMGLVK GD+Y +LSDI G ED Sbjct: 429 LVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGMED 488 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 H GDMDFKVAG++DGI+ALQMDIKI+G++++I+ AL QAK RLHIL + I+APR Sbjct: 489 HFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPRE 548 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 ++S +AP+I T+ I P+KIKDVIG GG I A+ +ETG I+IE DGTV IA+ D + Sbjct: 549 ELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNR 608 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 AI IE+I E+EVG VYTGKV RI FGAFV + G +GLVHIS++A +RV KV D L Sbjct: 609 KAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDIL 668 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 ++G EV VKV+EVD+QGR+ LS K E+ + + P AE+ Sbjct: 669 KLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEK 711 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/695 (50%), Positives = 474/695 (68%), Gaps = 5/695 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N I + + + L TG +ARQA AV V M ++ + T V KAK G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +NY+E YAAG+IPG FF+ EG+PS+ E L++RLIDRPIRPLF FVNE V +V+S Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 +P+ DI+A+IGASAALSLS P+ + A++VG IN ++VLNPT LK S+LDLVVA Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVN 239 GT +V+MVESEA LLSE+QML AV FG E Q VI+ I EL +EA KP+ + Q P Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQALYPA- 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA--EDETLDENELGEIL 297 +L + L + A+ + KQER +D+I + ++ E++ ++ L Sbjct: 240 -SLKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESAL 298 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 AIE ++R+ +L RIDGR IR + G+LP HGSALFTRGETQ+LV+ T G Sbjct: 299 KAIESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFG 358 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 T+ D Q++D L GE + F+ +Y FPPYSV E + +P RRE+GHG+LA R + ++P+ Sbjct: 359 TSLDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPN 418 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 +FPY++RVV+E TESNGSSSMA+VCG+SLALM AGVPIKA VAGIAMGLVKEG N+ V Sbjct: 419 KVQFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAV 478 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDILGDED+ GDMDFKVAG+ +GI+ALQMDIKI G+ +IM+VAL QA+ RLHIL M Sbjct: 479 LSDILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQM 538 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + I+ P ++S+ AP TIKI+ DKI+D+IG GG VI+ + E +G I+I DDGTV + Sbjct: 539 NKVISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSV 598 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+D +K K A+ +I+ I E E+G ++ G V +++D GAF+ G K+G VHIS+++ + Sbjct: 599 YASDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGE 658 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 R+E V+ L+ G V VK++ D +G+ +L+IK A Sbjct: 659 RIETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNA 693 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/679 (51%), Positives = 476/679 (70%), Gaps = 9/679 (1%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 + +E G +A+QA AV+V DT V VT + + G DFFPLTV+Y+E+ YAAG+IPG Sbjct: 13 LVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKMYAAGKIPG 72 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F +REGRPS L ARLIDRPIRPLFP+GF N+VQ++ATV+SV P++ AMIGAS Sbjct: 73 GFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPELAAMIGAS 132 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AL++S IPF GPI RVG +ND++V+NPT+++ K S L+L VAG+ AV+MVE+ A Sbjct: 133 CALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDAVMMVEAGANE 192 Query: 196 LSEDQMLGAVVFGHEQQQVVI---QNIN-ELVKEAGKPRWDWQPEPVNEALNARVAALAE 251 L ED +L A++FGHE+ + ++ Q I + KE +P+ P + EA+ A+ Sbjct: 193 LPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKSEPKLFLVPHEMEEAIRD----YAK 248 Query: 252 ARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLA 311 RL A R DK +R A + + ++T+ L +D+ E+ +H +EK+VVR + Sbjct: 249 DRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMDK-EIAIAIHDLEKSVVRHMITH 307 Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 + R DGRE + +R + G+LPRTHGS LFTRG+TQ L TLG+ D QV+D L E Sbjct: 308 EKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDGLGPE 367 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 T ++ HYNFP YSVGE + SP RREIGHG LA+R ++ V+P +++FPYT+R+VSE+ Sbjct: 368 TTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTIRLVSEV 427 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491 ESNGSSSM SVCG++L+LM+AGVPIK V+G+AMGLVKEGD Y +L+DI G ED LGDM Sbjct: 428 LESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQGMEDALGDM 487 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 551 DFKVAG+ +GI+A+QMDIK++G+++EI+ AL QAK R ILG M + I+ P ++S + Sbjct: 488 DFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPAAELSPY 547 Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 APR+ TIKI DKI+DVIG GG V++ + +ETG I+I +DG + I + D E K A + Sbjct: 548 APRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAEGMKKAKQM 607 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 IE+I E+EVG +YTG+VTR++ FGAFV + GKEGL HISQ+A RVEKV D +Q+G + Sbjct: 608 IEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDVVQVGDQ 667 Query: 672 VPVKVLEVDRQGRIRLSIK 690 + VKV+E+D +GRI LS K Sbjct: 668 LQVKVVEIDDKGRINLSHK 686 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/712 (50%), Positives = 479/712 (67%), Gaps = 17/712 (2%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G +++ ETG +A+QA + +V + V T + G DFFPLTV+Y+E TYA G Sbjct: 14 GGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTVDYREYTYAGG 73 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 R PG F +REGRPSE E L +R IDRPIRPLFPEGF E QVIA V+S + + +PD+ + Sbjct: 74 RFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVCGI 133 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 GASAAL++S IPFNGPIGA RVG I Q ++NPT DE++ SKL+++V GT ++M+ES Sbjct: 134 NGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVGTAEGIVMIES 193 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP----EPVNEALNARVA 247 A +E++++ A+ FGH + + + I++L KE GK + P +P + L ++ Sbjct: 194 GAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQPYLDGLRKKIG 253 Query: 248 A-LAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR 306 A LA+A ++ Y K E YA+V IKS+ + A+D+ +LG+ + +++ R Sbjct: 254 ADLADALNTEKY---PKSESYAKVKEIKSKLKEEIPADDDAA-LKKLGKYYELLREDIFR 309 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 +V + R DGR D IR + + VLPRTHGSA+FTRGETQALVT TLGT D Q ++ Sbjct: 310 QQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRME 369 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 GE F+ HYNFPP+SVGE + RREIGHG LA+R + AV+P DK+PY +R Sbjct: 370 GFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSEDKWPYAMR 429 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 VVS+I ESNGSSSMAS+CG SL+LMDAGVP+KA VAGIAMGLVKEGD+Y +L+DI G ED Sbjct: 430 VVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILTDIAGAED 489 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 H GDMDFKVAG+ GI+ALQMDIKI GIT +IM+ AL QA+ RL IL M + I +PR Sbjct: 490 HYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNEVIQSPRT 549 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 ++SEFAPR +T++I DKI+D+IG GG VIR + E TG I++ED G V +A++D E AK Sbjct: 550 ELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVASSDQEAAK 609 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 A++ I +ITA EVG+ Y G VTR+ DFGAFV I G +GL+HIS++A+ R++ V D L Sbjct: 610 KALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHRIKDVKDEL 669 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE-------APAAEQGE 711 G +V VKVL VD RI+LS K ++ + A E AP E E Sbjct: 670 HEGDQVLVKVLAVDGN-RIKLSRKAVLKEQRAKMATEGGGDGGPAPEVEHSE 720 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/693 (51%), Positives = 473/693 (68%), Gaps = 5/693 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 +PI + G + + LETG +A QA AV + T V VT Q A+ + FFPL V Sbjct: 5 FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQALAEE-KGFFPLVV 63 Query: 62 NYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +YQE +YAAGRIPGS+FRRE GRPSE E L+ RLIDRP RPLFP+GF +EVQ+IATV+S Sbjct: 64 DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK-LDLVV 179 + QV PD++A+ AS AL +S IPF+GPI RVGYI+ Q+VLNPT + L+L Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 A + AV+MVE + +SED + A+ +GH+ Q ++ E+ ++AGKP+ + P N Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA--EDETLDENELGEIL 297 E L A V AEA L +A+ I DK R +K +A ++ D+ + + GE+L Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGEVL 303 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK ++R+ + R+DGR+ +R + ++ GVLPRTHGS LF RGET+AL ATLG Sbjct: 304 EAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLG 363 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 + D Q ++ L GE F+ HYNFPPY VGE M+ P RR+IGHG LA+R VL V+P Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPG 423 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 ++FP+T+RVVS++ ESNGSSSMASVCGASLALMDAGVPIK VAGIAMGL+KEGD++++ Sbjct: 424 PEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDFLI 483 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILGDED +GDMDFKVAG+ DGI+ +QMDIKI GI + +M+ ALNQAK ARLHILG M Sbjct: 484 LTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRM 543 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + + APR ++S AP++ + INP+KI++VIG GG I+A+T ETG +I+IED G + I Sbjct: 544 AEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGKISI 603 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A E + A R+E +VG Y GKV +I+D G V I G EGLVH+SQ+ + Sbjct: 604 FAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQLDIE 663 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 RVE D ++MGQE+ VKVLE + GRIRLS K Sbjct: 664 RVESPFDVVKMGQELEVKVLEQEPSGRIRLSRK 696 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/697 (51%), Positives = 479/697 (68%), Gaps = 26/697 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 + L G +A QA+ +V+VS DT V VT G K+ + G DFFPLTV+Y+ER YA G+IPG Sbjct: 19 LKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEERFYAVGKIPG 78 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F +REGRPSE L ARLIDRPIRPLFP+GF N+V ++ATV+SVN P+I AM GAS Sbjct: 79 GFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPPEIAAMNGAS 138 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL+LS +PF GPIGA VG + D+ V+NPT ++ ++S+L LVVAGT AV+MVE+ AQ Sbjct: 139 AALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAVMMVEAGAQE 198 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 255 + E+ M+ A+ GHE+ + ++ I E +EA K E + + + A L EA + Sbjct: 199 VPEEIMIEAITRGHEEVKKIVAFIEEFREEALK--LGLAKEKMEVVVEEK-AELKEAVTA 255 Query: 256 DAYRIT------------DKQERYAQVDVIKSETIATLLAEDETLDENEL--GEILHAIE 301 +AY + +KQER ++ +K E L ET E EL IL +I+ Sbjct: 256 EAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFL---ETYPEEELTIKGILDSIQ 312 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K +VR ++L RIDGR+ D +R + G+LPRTHGS LFTRG+TQ L TLG D Sbjct: 313 KEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTLGAVGD 372 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Q+LD+L E + F+ HYNFPPYSVGE + P RREIGHG LA+R + V+P + F Sbjct: 373 VQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIPPEEVF 432 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 PYT+R+VSE+ ESNGS+SM SVCG++LALMDAGVPIKA VAG+AMGL+KEGD +L+DI Sbjct: 433 PYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVAILTDI 492 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 G ED LGDMDFKVAG++DGI+ALQMDIKI G+T++I+ AL QA+ R+HILG M + I Sbjct: 493 QGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGKMLEVI 552 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 + PR ++S +APRI ++P+KI+D+IG GG +I+ + +ETG I+IEDDG + IAA D Sbjct: 553 SEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIFIAAVD 612 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG------GGKEGLVHISQIA 655 E + A+ IE +T EIEVG+VY GKVTRI DFGAFV + GKEGLVHISQ+A Sbjct: 613 KEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVHISQLA 672 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 RV++V D ++ G ++ VK + D QGR++LS K+A Sbjct: 673 HSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKDA 709 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/703 (50%), Positives = 479/703 (68%), Gaps = 15/703 (2%) Query: 2 LNPIV--RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL 59 + PI+ R + +T+ETG +A QA AV+V +T V TVVG K+ G DFFPL Sbjct: 1 MPPIIHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPL 60 Query: 60 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 TV Y+E+ YAAG+IPG FFRREG+PSE L ARL DRPIRPLFP+G+ NEVQVI+TV+S Sbjct: 61 TVEYEEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLS 120 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + + PD++++IGASAAL+LS IP+ GP+GA R+G ++ + V+NPT +L ES++D+VV Sbjct: 121 ADQENEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVV 180 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT A+LMVE +A +SED+ + AVV H++ + ++ EL AGKP+ ++ P N Sbjct: 181 AGTADAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQEN 240 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETL----------D 289 L ++A RL +A DK R ++ E IA + +E L Sbjct: 241 VELKQQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVP-NEPLAIGTPQSGLPT 299 Query: 290 ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQ 349 E+G++ ++ K +VR +L R DGR+ D IR + ++ G+LPR HGSALFTRG+TQ Sbjct: 300 AKEVGDLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQ 359 Query: 350 ALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKR 409 L TLGT + Q LD L E T ++ HYNFPP+S GE + P RR+IGHG LA+R Sbjct: 360 VLTVCTLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAER 419 Query: 410 GVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 +LAV+P D+FPYT+R+VSE+ SNGS+SMASVCG+SLALMDAGVPI+ VAG+AMGLV Sbjct: 420 ALLAVLPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLV 479 Query: 470 KEGDN--YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 + Y +L+DI G ED LGDMDFKVAG+RDGI+A+QMDIK+ GIT EIM+ AL QA+ Sbjct: 480 TDQTTGRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQAR 539 Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTI 587 RL IL M + I+APR ++S +APRI IKI P++I +VIG GG VIRA+ E+TGT I Sbjct: 540 RGRLFILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKI 599 Query: 588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 IE+DGTV I+A + + A+ A+R IE +T EVG ++ G+V I+ GAFV I GK+G Sbjct: 600 SIEEDGTVFISAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDG 659 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 +HIS+IA +RV V D L++GQE+ V V+ V G+I LS K Sbjct: 660 FLHISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRK 702 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/697 (49%), Positives = 468/697 (67%), Gaps = 6/697 (0%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAA 70 + + +ETG MA+QA + +V +T V V + P FFPLTV Y+E+TYAA Sbjct: 8 FAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSP-LPFFPLTVEYKEKTYAA 66 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 G+IPG F +REGRP + E L AR+IDR IRPLFPEGF NEVQV V+S + + + D++A Sbjct: 67 GKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQENDADVLA 126 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 ++ AS AL+ S IPF GPI RVG + +VLNPT +L S L+LVVAG++ +++MVE Sbjct: 127 LVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSKDSIVMVE 186 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 + +SE+ +L ++ H+ + +I EL+ + P+ W E + RV LA Sbjct: 187 GGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGITTRVKELA 246 Query: 251 EARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVL 310 R+ +A DK R V+ K E LL E + ++G +L +E + +RS+VL Sbjct: 247 SGRIREALNQKDKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGNLLGDVEYHELRSQVL 305 Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM- 369 + R+DGR+KD +R + + T VLPR HGSALFTRG+TQALV ATLGTA+DAQ LD + Sbjct: 306 DTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQRLDSIKE 365 Query: 370 -GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 428 GE T +F+ HYNFPP+S GE + RREIGHG LA+R + V+PD FPYT+R+V Sbjct: 366 PGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADFPYTIRIV 425 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488 S++ ESNGSSSMASVCG SL+L DAGVP+KAAVAG+AMGL+KEG+ Y +L+DILG EDHL Sbjct: 426 SDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAILTDILGTEDHL 485 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 GDMDFKVAG++DGI+++QMDIKIEG+ +IM+ AL+QAK RLHILG M++A+ APR D+ Sbjct: 486 GDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEMDKALAAPREDL 545 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 S++APRI T++I DKI ++IG G IR + +ETG + +EDDGTV IAA G+ + A Sbjct: 546 SKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDGTVTIAAVGGDSMERA 605 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 + + ITAE VG Y G V + FGAFV I G E L+H+S++ +RVEK D ++ Sbjct: 606 KQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSEMRWERVEKPEDVVKK 665 Query: 669 GQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAP 705 G V VK+++ D +GR+RLS+K +P P+ P Sbjct: 666 GDRVTVKLVDRDERGRLRLSMKALL--PKPEGMPDEP 700 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/716 (47%), Positives = 470/716 (65%), Gaps = 22/716 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA-KPGQDFFPLTVNYQERTYAAGRIP 74 +T+ETG MA+QA A +V M DT V TVV + P QDFFP+ V Y+E+ YAAG+ P Sbjct: 15 ITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVEYREKYYAAGKFP 74 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 G F +RE RPSE E L ARLIDR +RPLFP G+ + Q+I +V+S + + D++ I A Sbjct: 75 GGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQLNDADVLGGIAA 134 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ 194 SAA+ +S IPF + RVG IN ++V+NPT +EL +S +D+ + GT + M+E E Sbjct: 135 SAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGGTNDTICMLEGEMN 194 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARL 254 +SE +ML A+ FGHE + + +++ E KP+ + + L + EA L Sbjct: 195 EISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPDELKESIKEACEAPL 254 Query: 255 SD-AYRITDKQERYAQVDVI------------KSETIATLLAEDET----LDENELGEIL 297 + AY K+ER + + K+E A +A D + L+E + + Sbjct: 255 KELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPSKALYLNEQIISGHI 314 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 HAIEK V+R +L R+DGR+ + +R + + G++PR HGSALFTRGETQALV TLG Sbjct: 315 HAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALFTRGETQALVVLTLG 374 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 T +DAQ++D L+ + F+ HYNFPP+SVGETG VG RREIGHG LA+R V V+P Sbjct: 375 TKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGHGNLAERAVKKVVPS 434 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 +FPYT+R+VSEI ESNGSSSMASVCGA+LA MD GVP+ V+GIAMGL+KE DNY V Sbjct: 435 ESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIAMGLIKEDDNYAV 494 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDILG+EDHLGDMDFKVAG+RDGI+A QMDIKI+G+ I++ AL Q+K RLHIL M Sbjct: 495 LSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKALEQSKNGRLHILDKM 554 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 ++I PRG+I ++AP++ TI++ D I +IGKGG IR++TEETG I ++DDGTV I Sbjct: 555 TESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEETGAQINVDDDGTVTI 614 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV-DFGAFVAIGGGKEGLVHISQIAD 656 ++ +GE A AI I+ + ++ EVG +Y GKV I D GAFV I +GLVHIS+IA Sbjct: 615 SSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEILPRTDGLVHISEIAR 674 Query: 657 KRVEKVTDYLQMGQEVPVKVLEV---DRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +RV KV+D+L+ G V VK++++ R G+IR ++ PA + P+A++ Sbjct: 675 ERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSIKALLDMPAESANGPSAQE 730 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/706 (47%), Positives = 483/706 (68%), Gaps = 13/706 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + + ++G ++T+E+G +ARQA AV+V T+V TVV QK +K DF PLT Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVVSQK-SKEAVDFLPLT 59 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V + ++YA G+IPG FF+REG+PS+ ETLI+R+IDR IRPLFP GF +EV V+ ++S Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLV 178 + P+ VA+IGASAAL++SGIPF+ P+ AR+GYI + Y+LNP+ DEL S LD+ Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR-WDWQPEP 237 A T+ ++LMVESEA L+E +MLGA+ FGHE + +I+ I E +EA K ++ P Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCD 239 Query: 238 VNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL----LAEDETLDENEL 293 ++ +++ + + + R AY +K+ R A++D +++ L L+E E + Sbjct: 240 LSTIIDS-IGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIA 298 Query: 294 GEILHAI---EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 +I++A+ E+++VR RVL + RIDGR D IR +++ ++ + HGSALFTRG+TQA Sbjct: 299 QDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQA 358 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 LV LGT +D Q++D G++ + FL HYNFPPY+VGE + P RREIGHG+LA R Sbjct: 359 LVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 + V+P FPYT+RVVSEITES+GSSSMA+VCGASLALMD GVP+K++VAGIAMGL+K Sbjct: 419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478 Query: 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 EGD Y +LSDILGDED+LGDMDFKVAG+R+GI+ALQMD+K++GI ++ AL+QAK R Sbjct: 479 EGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGR 538 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 I+ M++ I RG + E PR+ ++ I+ KIK+VIG GG +R + E+TG IEI Sbjct: 539 FFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEIS 598 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 DGTV I A E + A I I +E EVG++Y+G+V + +GAFV G ++GLVH Sbjct: 599 QDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVH 658 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 IS+I ++ + V D L +G +V V V+++D+ I+LS++ +++ Sbjct: 659 ISEIRNEHINAVADVLAVGDKVKVLVIDMDKD-HIQLSMRRIDQET 703 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/729 (47%), Positives = 475/729 (65%), Gaps = 26/729 (3%) Query: 1 MLNPIVRK-FQYGQ-HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP-GQDFF 57 M++ I+ K GQ +++ETG MA+QA +V+V + DT V TVV KK P QD+F Sbjct: 1 MISMIINKAIDLGQGKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYF 60 Query: 58 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATV 117 PL V Y+E+ AAG+ PG FF+RE RPSE E L ARLIDR +RPLFP+G++ E Q+I TV Sbjct: 61 PLQVEYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV 120 Query: 118 VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 177 +S + + D++ + ASAA+ +S IPF+ + RVG IN ++++NP +EL S LD+ Sbjct: 121 ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDI 180 Query: 178 VVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 237 + GT + M+E E + +SE +ML A+ FGH+ + + NE+ E KP + P Sbjct: 181 CIGGTTDTICMLEGEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAV 240 Query: 238 VNEALNARVAALAEARLSD-AYRITDKQERYAQVDVIKSETIATLL-------------- 282 + L V L E RL + AY K++R Q I E I + + Sbjct: 241 IPSELTDLVRGLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQA 300 Query: 283 --AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGS 340 ++ L+E+ + E +HA+EK V+R +L R+DGR + +R + + G++PR HGS Sbjct: 301 DPSKALCLNEHIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGS 360 Query: 341 ALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRRE 400 ALFTRGETQALVT TLGT +DAQ +D L F+ HYNFPP+SVGETG +GS RRE Sbjct: 361 ALFTRGETQALVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRRE 420 Query: 401 IGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAA 460 IGHG LA+R + V P +FPYTVR+VS+I ESNGSSSMASVCG +LALMD GVPI+ Sbjct: 421 IGHGNLAERAIKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKP 480 Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 V+GIAMGL+KEG NY VLSDILG+EDHLGDMDFKV+G+RDGI+A QMDIKI+G+ I++ Sbjct: 481 VSGIAMGLIKEGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILE 540 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL QA+ RLHIL ME+AI + R ++++FAPR+ TI++ D I +IGKGG IR++T Sbjct: 541 SALEQARRGRLHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSIT 600 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-FGAFV 639 EETG I IEDDGTV IA + E A+ I+ + A+ EVG +Y GKV + D GAFV Sbjct: 601 EETGAEINIEDDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFV 660 Query: 640 AIGGGKEGLVHISQI-ADKRVEKVTDYLQMGQEVPVKVLEV---DRQGRIRLSIK-EATE 694 +GLVHIS+I A +RV KV+D+L++G + VK+++V R G+ R ++ A E Sbjct: 661 EFLPKTDGLVHISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVE 720 Query: 695 QSQPAAAPE 703 AP+ Sbjct: 721 TDAANGAPQ 729 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/694 (47%), Positives = 459/694 (66%), Gaps = 9/694 (1%) Query: 5 IVRKFQY--GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 IV+K+Q + +E G +A+QA A ++ DT V VT K+ + G DFFPLTV+ Sbjct: 2 IVKKYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVD 61 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E+ YA G+IPG F +REGR + TL ARLIDRPIRPLFP+GF NE+ V+AT++SV Sbjct: 62 YEEKQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEK 121 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 PD+ A+ GAS ALS+S IPF GP+ A VG ++ + ++NPT ++ ++S L L VAGT Sbjct: 122 DNAPDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGT 181 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + A++MVE A + E+ M A+ F HE+ + ++ +++E G + + ++E + Sbjct: 182 KEAIMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPILDEEI 241 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 302 V A +A + DK+ R Q+D +++ E +E + ++ K Sbjct: 242 KKAVVEFATPLFEEAVKNPDKKTREDQMDS-SQKSVLQHFTESYPEEEKLIADVSDETMK 300 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 VVR L R+DGR+ D IR + G LPR HGS LFTRG+TQ L TLG + Sbjct: 301 AVVRKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEE 360 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q LD L E ++ HYNFPPYS GET + P RREIGHG LA+R +LAV+P ++FP Sbjct: 361 QRLDGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSEEEFP 420 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVVSE+ ESNGSSSM SVCG++L+LM AGVPIKA V+GIAMGLVKEG+ + ++SDI Sbjct: 421 YTIRVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIMSDIQ 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G ED LGDMDFK+AG+ G++ALQMDIKI G+ +EI++ AL QA+ R+ IL M +AI+ Sbjct: 481 GIEDALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKMLEAID 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 P ++S +AP++ ++I+PDKI++VIG GG I + +ETG I+IEDDG++ I ATD Sbjct: 541 KPNEELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIMATDE 600 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI------GGGKEGLVHISQIAD 656 E AK A +E I AE+EVG+ Y G V RI+DFGAFV I GKEGLVHISQ+A+ Sbjct: 601 EAAKKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHISQLAE 660 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 +RV KV D + +G ++ VKV E+DRQGR+ LS K Sbjct: 661 ERVNKVRDVVDIGDQILVKVTEIDRQGRVNLSRK 694 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/688 (48%), Positives = 454/688 (65%), Gaps = 3/688 (0%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + ETG +ARQA AV+V +T VF T A DF PL V+YQE+ +AG Sbjct: 11 GAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQEKFSSAG 70 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 + G F +REGRP+E E L++RLIDRPIRP+F EG+ NEVQ+++ V S + +P+ +A+ Sbjct: 71 KTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEPLAI 130 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 GASAAL +S IP P+GA R+G+I+ Q+++NPT ++ K+SKLDL++AGTE AVLM+E Sbjct: 131 CGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEEAVLMIEG 190 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAE 251 L+EDQ+L A+ GH + + Q + + + GKP+ + + L A V ++A Sbjct: 191 FCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYADVESIAN 250 Query: 252 ARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE--TLDENELGEILHAIEKNVVRSRV 309 L A RI +KQ+R + + L+ E+E + ++ + ++R + Sbjct: 251 PLLEKALRICEKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIKDVSSKMMRQMI 310 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 L R DGR IR +D+ +LPR HGS+LFTRGETQAL TLG A AQ ++L Sbjct: 311 LNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQRFEDLE 370 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 GE + F Y+FPPYSVGE G VG+P RREIGHG+LA+R ++AV+P ++FPYT+R+ S Sbjct: 371 GEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLES 430 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 ITESNGSSSMA+VCG LALMDAGV IK VAGIAMGL+ E + +++LSDILG ED LG Sbjct: 431 NITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSDILGIEDALG 490 Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 DMDFKV G ++GI+A QMDIK+EGIT EIM+VAL QAK R+HIL M +G++S Sbjct: 491 DMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPTYKGEMS 550 Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 +APRI TI+I P KI VIG GG IRA+ E+TG I+I+D G V IAA D + A Sbjct: 551 RYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIAAIDLVSIEKAK 610 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 I +TAEIE+GR+Y+GK I FG FV I GKEGL HIS+ R+ + ++++ G Sbjct: 611 AIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNRINSLDEFVKQG 670 Query: 670 QEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 + VKVL+++ +G+I+LS ++AT QSQ Sbjct: 671 DMLMVKVLDINERGQIKLS-RKATLQSQ 697 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/715 (47%), Positives = 461/715 (64%), Gaps = 41/715 (5%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 V +ETG +ARQA +V+V+ T V VT K+ K GQDFFPLTV+Y E+ YA G+ PG Sbjct: 16 VKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLTVDYIEKFYATGKFPG 75 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F +RE +PS E LI+RLIDRPIRPLFPEGF N V V+ VVS + P+ +A IG S Sbjct: 76 GFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSFDGINMPEDIATIGVS 135 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AL LS IPF+GP+ VGY+N +Y++NP +++ + L VAGT++A+ MVE+ A Sbjct: 136 FALGLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLSVAGTKSAITMVEAGASE 195 Query: 196 LSEDQMLGAVVFGHE-------QQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAA 248 +SE++ML A++ GHE QQ+ ++ ++N E +D E V LN Sbjct: 196 VSEEEMLNAIMLGHEEIKKICEQQETILNSLNITKMEFKGINYD---ERVTTFLNKY--- 249 Query: 249 LAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE------------------------ 284 + L +A + K E+Y +D + ++T E Sbjct: 250 --QGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEILSKEKTEEEKLLELIGENK 307 Query: 285 DETLDE--NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSAL 342 ++++DE E + H +EK +VR ++ + R DGR+ D IR L+ + VL HGSAL Sbjct: 308 EKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEIRPLNAQIDVLKMPHGSAL 367 Query: 343 FTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIG 402 FTRGETQALVTATLG+ D Q++D + GE F HYNFPP+SVGE G + +P RRE+G Sbjct: 368 FTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPPFSVGEAGFMRAPGRRELG 427 Query: 403 HGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 462 HG LA+R + AVMP +D FPYTVRVVSEITESNGSSS AS+CG SLALM AGVPIK VA Sbjct: 428 HGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAGVPIKGTVA 487 Query: 463 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 522 GIAMGL+KE +N+ VL+DI G EDHLGDMDFKVAG++ GI+A+QMDIKIEGI KEIM++A Sbjct: 488 GIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGINKEIMEIA 547 Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 582 L QA R+HI+ VME I R ++ E AP+I +KI+P KI +IG G +I+++ EE Sbjct: 548 LTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSKIAGLIGPAGKIIKSIIEE 607 Query: 583 TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 TG I++EDDG V I D EK A + + T +E+ +VY G+VT++ FGAFV + Sbjct: 608 TGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKVYKGRVTKLAKFGAFVELV 667 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 G EGL+HIS+I+ KR+++V D L++ V VKV+ ++ + LS+K E+ + Sbjct: 668 PGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNKFSLSMKALIEKEE 722 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust. Identities = 336/683 (49%), Positives = 460/683 (67%), Gaps = 13/683 (1%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +T+E G +A+ A AV+V DT + V + + G DFFPLTV+Y+E+ YAAG+IPG Sbjct: 18 LTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYEEKMYAAGKIPG 77 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 SFF+REGRP+E L +RL DRP+RPLFP+G+ N+VQV T +S + +P +A+IGAS Sbjct: 78 SFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVNDPGPLAIIGAS 137 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL +S IPF P+GA ++G+I+ + +NP ++ S+LDLVVAGT AV+MVE+ A Sbjct: 138 AALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTSEAVMMVEASAYE 197 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 255 L+E +ML AV GHE Q VIQ EL ++ GKP+ ++ V+ +L + A R Sbjct: 198 LTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKPKKEFVAPVVDTSLQDEIKAWMGNRFL 257 Query: 256 DAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV-------VRSR 308 A +DK R A D ++++ + A + E EL + A+ KN VR+ Sbjct: 258 QALNNSDKAAREAATDSLRTDVLEQFSA---GVAEEELAARVKAVTKNYDALVKDEVRAS 314 Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 +L R+DGR+ + IR + V GVLPR HGS LFTRG+TQ L ATLG+ D Q LD+L Sbjct: 315 ILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPGDEQRLDDL 374 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 428 E T ++ HYNFP +S GE P+RR+IGHG+LA+R ++ V+P+ DKFPYT+R+V Sbjct: 375 GIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPVLPEKDKFPYTMRLV 434 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV--KEGDNYVVLSDILGDED 486 SE+ SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ KE + VL+DI G ED Sbjct: 435 SEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEAGQFSVLTDIQGLED 494 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 LGDMDFKVAG+ GI+ALQMDIK GIT EIMQ A QA+ R+ IL M + IN R Sbjct: 495 ALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVFILDKMNEIINTARN 554 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 DIS+FAPRI T++I+P KI +IG GG IR++ E+TG I++EDDG V + D + A+ Sbjct: 555 DISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDDGRVFVTTPDADGAR 614 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 A IE +T E +VG ++TGKV RI+ +GAFV + GK+G+VH+S++ +KRVE V D + Sbjct: 615 MAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVSELDEKRVENVEDVV 674 Query: 667 QMGQEVPVKVLEVDR-QGRIRLS 688 ++G E+ V V++V+ G++ LS Sbjct: 675 KIGDELTVMVIDVEPGTGKLSLS 697 >UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Tax=Aquificales RepID=PNP_PERMH Length = 709 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 316/684 (46%), Positives = 476/684 (69%), Gaps = 3/684 (0%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +++ETG A+Q+ AV+V +TAVFV V ++A+ DF PLTV+Y+E+TYA G+IPG Sbjct: 21 ISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYREKTYAYGKIPG 80 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F +REG+P+ E L++RLIDRPIRP+FP+GF N+V + A +S + + +PD++A++GAS Sbjct: 81 GFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDKYDPDVLAIVGAS 140 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL ++ PF GP+ RV ++ ++++NPT ++ S +D+VVAGT+ A++MVE ++ Sbjct: 141 AALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTKDAIVMVEGGSEE 200 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 255 +SE+ +L A++F HE+ + + EL + GK + + + +E + A + ++ + Sbjct: 201 VSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEEDERIKAELESIVRESVK 260 Query: 256 DAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPR 315 +A+ I DK+ER ++ I E I + +E + E+ I I N++R +VL + R Sbjct: 261 EAFNILDKKERNKRIKEIYEEAIQKIEIPEEKEKKAEV--IYKEIVSNIMREKVLKEKVR 318 Query: 316 IDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDT 375 IDGR D IR + +RTG+ PR HGSA+FTRG+TQA V TLG + Q+ + + Sbjct: 319 IDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIEESIEEGEEKK 378 Query: 376 -FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 F+ HYNFPP+S GE +P RREIGHG LA+R + ++PD ++FPY +RVVSEI ES Sbjct: 379 RFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEFPYVIRVVSEILES 438 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 494 NGS+SMA+VCGASL+L DAGVP+K VAGIAMGL+KE D+YV+L+DILGDEDHLGDMDFK Sbjct: 439 NGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDILGDEDHLGDMDFK 498 Query: 495 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 554 VAG+RDG++++QMDIKI+G++KEI+Q AL QAK AR+HIL +M +A+ PR ++S AP+ Sbjct: 499 VAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAMPQPRPELSPHAPK 558 Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + T+++ P+KI +IG G I+ + +ETG I+++ +G V+I A DGE A A IE Sbjct: 559 VITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVDGESADKAKEMIER 618 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +IE+G VY GKVTR+ D+GAFV + GK L+H+SQI+ +R+ + +++G + V Sbjct: 619 LIMDIELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIRSAKEKIKVGDILTV 678 Query: 675 KVLEVDRQGRIRLSIKEATEQSQP 698 KV+++D GR ++S+KE E +P Sbjct: 679 KVIDIDEMGRAKVSLKEVREGEEP 702 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 324/686 (47%), Positives = 457/686 (66%), Gaps = 11/686 (1%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +T+ETG MA A AAV V+ +T V VT + G DFFPL V Y+E+ AAG+ G Sbjct: 17 ITIETGKMALLANAAVTVTQGETVVLVTAC-SSAPRAGIDFFPLMVAYREKYSAAGKFLG 75 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F +RE RPSE E L +R+ DRP+RPLFP+GF +EVQ+ A V+S + +PD +AM+G+S Sbjct: 76 GFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLAMLGSS 135 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL LS +PF GP+GA RVG ++ ++V NPT ++++ S L+L+ +GT +M+E + Sbjct: 136 AALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPGKTIMIEGDCDE 195 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 255 LSE+++ A+ + + +V+ + EL GK + D+ + + E + A VA ++ Sbjct: 196 LSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIEEDVKAAVATAISGKID 255 Query: 256 DAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEI----LHAIEKNVVRSRVLA 311 +A + D+ ER A +D + + L A+ DE GE+ H IE N+ R + Sbjct: 256 EACLVIDRTERGAALDAVYATVEEALKAQ---FDEERHGELKEAYSHLIEMNIRRLIIEE 312 Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 G+ R DGR + +R L ++PRTHGSALF RGETQALVT TLG A+ AQ + + G Sbjct: 313 GK-RADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGR 371 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 TF HYNFP +SVGE G + REIGHG LA+R + +MP +PYTVRV+SE+ Sbjct: 372 YDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMPA--DYPYTVRVISEV 429 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491 SNGS+SMAS+CG SLALMDAGVP+K AVAGI++GLV+E D YV+++DILG EDH GDM Sbjct: 430 MGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMITDILGSEDHYGDM 489 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 551 DFKVAG+RDGI+A Q+D+KI G++ ++M A+ + K AR+ IL VM+ +++ + +IS+ Sbjct: 490 DFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSSAQEEISDH 549 Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 AP++H +KINP+KI +IG GG I+A+ EETG I +EDDGTVK+ D K AI + Sbjct: 550 APQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFTADKTALKAAIEQ 609 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 +E E E G++Y G V + +FGAFV I GG +GL+HIS++AD RVEKVTD + G + Sbjct: 610 VESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRVEKVTDVVNEGDK 669 Query: 672 VPVKVLEVDRQGRIRLSIKEATEQSQ 697 V VK+LE+D +GR+RLS K A E+ + Sbjct: 670 VSVKILEIDDRGRMRLSRKAALEEME 695 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 627 bits (1616), Expect = e-178, Method: Compositional matrix adjust. Identities = 343/700 (49%), Positives = 459/700 (65%), Gaps = 27/700 (3%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-DFFPLTVNYQERTYAAGRIPGS 76 +E G +A+QA A M+ DT V T V KAK GQ DFFPL V Y E+ YAAG+IPG Sbjct: 17 VEVGEIAKQANGAAMIYYGDTVVLSTAVA--KAKVGQTDFFPLMVIYAEKQYAAGKIPGG 74 Query: 77 FFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASA 136 FFRREGRPSE ETL +RLIDRP+RPLF +G+ NEVQV+ TV+S +P+ + + AM+G+S Sbjct: 75 FFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSDPEASSQMAAMLGSSI 134 Query: 137 ALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLL 196 AL +S IPF GPI A VG I+ Q+VLNP+ ++L S +DL+VAGT+ A+ MVE+ A+ + Sbjct: 135 ALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAGTKDAINMVEAGAKQV 194 Query: 197 SEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSD 256 SE+ ML A++FGHE + + + K G + + + +N+A+ V A L Sbjct: 195 SEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELLSLNQAIFDEVFAYKGKELVK 254 Query: 257 AYRITDKQERYAQVDVIKSETIATLLAED--------ETLDENELGEILHAIEKNV---- 304 A + DKQERY +D IK E +A + E LD ++ E+++ ++ ++ Sbjct: 255 AVSLVDKQERYDVIDAIKDEVVAHFEQRNFWMTVDGKEVLDADQKKELMNQVKVSLDRIV 314 Query: 305 ---VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 VR + + R DGR D IR L +LPRTHGSALFTRG+TQAL TLG+ + Sbjct: 315 TKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRGQTQALGIVTLGSLNE 374 Query: 362 AQVLDELMGER-TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 Q++D L E T F+ HYNFPP+SVGETG G+P RREIGHG L +R +L V+P D+ Sbjct: 375 NQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGALGERALLQVLPSEDE 434 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 FPY +RVVSEITESNGSSS A++C S+ALM AGVPIKA VAGIAMGL+ +G++Y +LSD Sbjct: 435 FPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIAMGLIMDGEHYSILSD 494 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 I G EDH GDMDFKVAG++DGI+ALQMDIKI+GIT EIM+ AL QA+ RLHIL M Sbjct: 495 IQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQARKGRLHILSHMNTV 554 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE-TGTTIEIEDDGTVKIAA 599 I+ R ++S FAP++ I+INPDKI+DVIG GG +I + E+ I+IE DG V I Sbjct: 555 ISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNNVKIDIEQDGRVFIMH 614 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-------FGAFVAIGGGKEGLVHIS 652 TD IE + E +VG +Y KVTR++ G F I G EGLVHIS Sbjct: 615 TDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGVFAEIFPGTEGLVHIS 674 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 + +R E + +++G ++ VKV+++D +GR+ LS K+A Sbjct: 675 KWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRKDA 714 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 627 bits (1616), Expect = e-178, Method: Compositional matrix adjust. Identities = 337/685 (49%), Positives = 449/685 (65%), Gaps = 14/685 (2%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G +++ETG +A+ A+ +V + DT + VT +++ + DF PLTV ++ER YA G Sbjct: 11 GGRELSIETGKLAKLASGSVTLRYGDTLLLVTAQAREE-RSTLDFLPLTVEFEERHYAVG 69 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIPGSF RREGRP E L AR+ DR IRPLFP+G+ E QVI TV+S + Q PD++ Sbjct: 70 RIPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDVLGA 129 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 IGASAALSLS IP+NGP RVG I+ +YV+NPT D+L S LDLVVAGT AV MVE+ Sbjct: 130 IGASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTRDAVNMVEA 189 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR-VAALA 250 AQ +SE+ ++GA+ F H + Q V+ I + E G+ ++++ V+ L+ V L+ Sbjct: 190 GAQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFL---VDSDLSTDLVPELS 246 Query: 251 EAR----LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHA----IEK 302 EA L DA T KQER A + ++ IA + + E E E L A +EK Sbjct: 247 EAARAAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAFAKVEK 306 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 +R +L + R DGR +R + + LPR HGSA+FTRGETQ L TLGT RD Sbjct: 307 QELRRLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDE 366 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 ++D L GE D FL HYNFPPYS GE VG RRE+GHG LAKR + AV+P D FP Sbjct: 367 LLVDNLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPAFDDFP 426 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 Y +RVV E+ ESNGSSSMA+VC +L+LMDAGVPI+A VAG+AMGLV EG+ Y +L+DIL Sbjct: 427 YVIRVVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRILTDIL 486 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G ED LGDMDFKV G+ +G++ALQMDIK+ G+T IM+ AL QA+ ARLHILG M + + Sbjct: 487 GLEDALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKMAEVLP 546 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 APR ++S APRI T+KINP+ I VIG GG +R L E G + IE+DG ++I + DG Sbjct: 547 APRPELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRIFSADG 605 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 A+ ++IE +T E +VG Y G V + FGAFV + G++G++HISQ+++ RV V Sbjct: 606 AAAEAVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENRVNAV 665 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRL 687 D L +G + VK+ +D +G+I L Sbjct: 666 EDVLNVGDRLRVKIANIDDRGKIDL 690 >UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Tax=Treponema pallidum RepID=PNP_TREPS Length = 702 Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust. Identities = 321/685 (46%), Positives = 446/685 (65%), Gaps = 4/685 (0%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G H + LE+G +ARQA +V + + TA+ TV + + G D+ PLTV++ E+ YA G Sbjct: 10 GDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDFNEKYYAVG 69 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP-DIVA 130 ++PG F +REGRP + E LI+RLIDRP+RPLF + F ++ V+ T +S + V+P D++A Sbjct: 70 KMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSD-MVHPHDVLA 128 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 ++ +SAA++LS IPF+GP+ A RV Y+N YV+NPT ++ + +++VVAGT + MVE Sbjct: 129 IVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTRQGITMVE 188 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 A+ +SED MLGA+ E + + L GK + P R+ LA Sbjct: 189 GGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGRDRIYELA 248 Query: 251 EARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGE-ILHAIEKNVVRSRV 309 RL+ A K ER + D +K + A+ E + L + + H +E ++R + Sbjct: 249 YPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEYEILRLNI 308 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 L RIDGR D IR + GVLPR HGSA+FTRGETQ+L TLG D QV D++ Sbjct: 309 LDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIE 368 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 G+R + F+ HYNFPP+SVGE G +G RREIGHG LA R + AV+PD ++FPYTVRVVS Sbjct: 369 GDRRENFILHYNFPPFSVGEIGRMGV-GRREIGHGCLAHRSLSAVIPDPEQFPYTVRVVS 427 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 EI ESNGSSSMA+VC +L+L+ AGVPIK VAGIAMGL+ +G Y +LSDILG+EDHLG Sbjct: 428 EILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDILGEEDHLG 487 Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 DMDFKVAG+ DGI+ QMD+K+E ++ +M+ AL QA+ RLHIL VM Q I+AP IS Sbjct: 488 DMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTISAPSVHIS 547 Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 +AP I + KI +KI +IG GG +++L+++ TI + DGTV ++ D + A Sbjct: 548 RYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDAQSVFDAK 607 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 + +T + VGRVY G V RIV+FGAFV I GKEGL H+S+++ RV KV+D LQ G Sbjct: 608 VAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKVSDVLQEG 667 Query: 670 QEVPVKVLEVDRQGRIRLSIKEATE 694 Q + VK++++DR GR+ LS +A E Sbjct: 668 QRICVKLIDIDRMGRLNLSYIDALE 692 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 340/681 (49%), Positives = 463/681 (67%), Gaps = 6/681 (0%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 T+TLE G A QA AV+V DT + T V K+ + DFFPLTV+Y+E+ YAAG+I Sbjct: 16 RTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDYEEKMYAAGKI 75 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 PGSFF+REG+P++ L ARL DRP+RPLFPEG+ NEVQ+I T S++ +P +A+IG Sbjct: 76 PGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVNDPAPLAIIG 135 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 ASAAL++S IPF GP+GA +VGYI+ + +NP ++ S LDLVVAGT+ AVLMVE+ A Sbjct: 136 ASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGTKDAVLMVEAGA 195 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR 253 + L ED ML A++ GH+ + + NELV+ AG+P+ ++ P PV+ +L + R Sbjct: 196 KELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTSLEEAIQQWLGNR 255 Query: 254 LSDAYRITDKQERYAQVDVIKSETIATLLA-EDETLDENELGEILHAIEKNV---VRSRV 309 L +A +K R AQ + +K E IA A E E E + + A E + VR + Sbjct: 256 LYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVSTAFENLLYEEVRRMI 315 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 L R+DGR IR + + G++PR HGS LFTRG+TQ L ATLG+ + Q LD+L Sbjct: 316 LERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPAEEQRLDDLG 375 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 E T ++ HYNFPP+S GE +GSP+RR+IGHG LA+R +LAV+P ++FPYT+R+VS Sbjct: 376 IETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVLPSKEEFPYTMRLVS 435 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-NYVVLSDILGDEDHL 488 E SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ D + VL+DI G EDHL Sbjct: 436 ETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDGRWRVLTDIQGIEDHL 495 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 GDMDFKVAG+ G++ LQ+DIK GIT EIM+ A QA+ RL+IL M I+ PR ++ Sbjct: 496 GDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYILDKMNAVISEPRKEL 555 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 S +APRI T++INP+KI +IG GG +R +TE TG I+IE+DG V I+ D A+ A Sbjct: 556 SPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDGRVYISTPDAAAAQQA 615 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 + +E +T EI+VG ++ GKV RI+ FGAFV + GK+G+VH+S++ RVE V D ++M Sbjct: 616 VAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDVGRVENVEDVIKM 675 Query: 669 GQEVPVKVLEVDR-QGRIRLS 688 G E+ V V+ ++ G++ LS Sbjct: 676 GDEINVMVIGIEPGTGKVSLS 696 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 329/683 (48%), Positives = 455/683 (66%), Gaps = 7/683 (1%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 + LETG++A+QA +V + + +T + TVV K+ DFFPLTVNY E+ YA G+IPG Sbjct: 13 LILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNYNEKYYAGGKIPG 72 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 FF+RE +P + E LI+R+IDRP+RPLFPEGF NEVQ+I TV+SV+ + D +A+I +S Sbjct: 73 GFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTDMPTDALALIASS 132 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL++S IPF GP+ A R+GY N +Y++NP EL S+LD++VAG++ A+LM+E EA+ Sbjct: 133 AALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSKDAILMIEGEAKE 192 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLS 255 +SE+ +GA+ H++ Q I NE+ G + + + + L V ++ Sbjct: 193 VSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLVKMVTEYGRDKIE 252 Query: 256 DAYRITDKQERYAQVDVIKSET---IATLLAEDETLDENELGEILHAIEKNVVRSRVLAG 312 A DK +R +D +E I T + EDE L G I H+IE+ +VR ++ Sbjct: 253 SANYNPDKTKRNESMDNAFNEIEEYIKTKV-EDEKLISQVKG-ICHSIEEEIVREAIVEK 310 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R DGR D IR + T ++PR HGSALFTRG+TQ L TLG+ +DAQ++D++ G+ Sbjct: 311 CMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDAQLMDDIYGKE 370 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 TF+ HYNFPP+SVGE G G+P RREIGHG LA+R AV+P DKFPYT+RVV+EI Sbjct: 371 NKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFPYTIRVVAEIL 430 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 492 ESNGSSSMA++C ++++L+ AGVP+ A+VAGIAMGL D Y +L+DI G EDHLGDMD Sbjct: 431 ESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDIQGVEDHLGDMD 490 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG+R GI+A Q+DIK+ GI+ +I++ AL QAK AR IL ++ I A G+IS+FA Sbjct: 491 FKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATI-ANAGEISDFA 549 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRI 612 P+ T+ +NP+KI+ +IG GG I+A+ EETG+ +EI+D G V I A D I+ I Sbjct: 550 PKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPDTPTLDKTIKLI 609 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 + EVG VY G V I DFGAFV I G EGL HIS++A K V V + L++G EV Sbjct: 610 NSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMNVEEVLKIGDEV 669 Query: 673 PVKVLEVDRQGRIRLSIKEATEQ 695 VK+L+V + G+ LS K E+ Sbjct: 670 KVKILDV-KGGKYSLSRKALLEK 691 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 341/710 (48%), Positives = 455/710 (64%), Gaps = 22/710 (3%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAA 70 + + +ETG +A+QA +V+V ++ V V KK G DFFPL VNY+E+ YAA Sbjct: 10 FAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQVNYEEKMYAA 68 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 G+ PG F +REGRPS TL ARLIDRPIRP+F EGF NEVQVI TV+S + + + A Sbjct: 69 GKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAA 128 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 M G+S ALS+S IPF+GPI +VGY++ Q ++NP+Q++ ++S L+L VAGT+ A+ MVE Sbjct: 129 MFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAGTKHAINMVE 188 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 S A+ LSE+ ML A++ GHE + +I E+V GK + + + V+ L A + A Sbjct: 189 SGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAELQAEIIAAY 248 Query: 251 EARLSDAYRITDKQERYAQVDVIKSETIATL---LAEDETLDE--NELGEILHAIEKNVV 305 + L A ++ +K R A V+K + A A+ E D ++ EIL +E V Sbjct: 249 NSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEILEQMEHAEV 308 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R + + R DGR+ D IR LD LPR HGS LFTRG+TQAL TL + Q++ Sbjct: 309 RRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTLAPMGETQII 368 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D L E F+ HYNFP YSVGETG G+P RREIGHG L +R + V+P +++FPY + Sbjct: 369 DGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSLEEFPYAI 428 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 R+V+E+ ESNGSSS AS+C +LALM GVPIKA VAGIAMGL+ +G+NY VL+DI G E Sbjct: 429 RLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYTVLTDIQGLE 488 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 DH GDMDFKVAG+RDGI+ALQMDIKI+GIT EI+ AL QAK AR IL V+E I R Sbjct: 489 DHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDVIEATIPEVR 548 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 +++ AP+I TIKI+ DKIK VIGKGG I + ETG I+I+++G V I ++D Sbjct: 549 LELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVSIYSSD---- 604 Query: 606 KHAIRRIEEITA----EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 + AI R +EI A E +V VY KV RI FGAFV + + LVHIS++A R + Sbjct: 605 QDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAWTRTNR 664 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V D +++G EV VKV+++D +GRI S+K A P P E E Sbjct: 665 VEDLVEIGDEVDVKVIKIDEKGRIDASMK--------ALLPRPPKPEHDE 706 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust. Identities = 338/719 (47%), Positives = 471/719 (65%), Gaps = 23/719 (3%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 + + + L TG A QA +VM+ DTAV VT + + G DF PL +Y+ER Sbjct: 6 QSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTAT-RSTGREGIDFLPLICDYEER 64 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 YAAGRIPGSF RREGRP E TLIARLIDRP+RPLFP +++Q++AT +S++ +V Sbjct: 65 LYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVPA 124 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 D++A+ GAS A L+ IPF GP+ A RVG + D +VLNP+ E++ LDLVVAGT V Sbjct: 125 DVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPDGV 184 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV 246 +MVE+ A L + ++ A+ FG+E +I+ ++K+AG + QPEP + + ++ Sbjct: 185 VMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQV--QPEPPTQDQDTKL 242 Query: 247 AALAEARLSDAYRITDKQ------ERYAQVDVIKSETIATL--LAEDETL------DENE 292 + E S + KQ ER +++D IK++T + L ED+ + + Sbjct: 243 STYLEKNCSKSIGEVLKQFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANSKV 302 Query: 293 LGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGETQAL 351 L A+ K ++R +++ R+DGR+ D +R + GVLP R HGS LF RG TQ L Sbjct: 303 LSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVL 362 Query: 352 VTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 411 TATLGT DAQ +D+L T+L HYNFPPYSVGET + SP RRE+GHG LA+R + Sbjct: 363 STATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAERAI 422 Query: 412 LAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 471 + V+P D FPY +RVVSE+ SNGS+SM SVCG++LALMDAGVP+KA V+G AMGL+KE Sbjct: 423 IPVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE 482 Query: 472 GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +L+DI G ED LGDMDFKVAG++DGI+ALQMD+KI G+ + + A+NQA+ AR+ Sbjct: 483 DAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPARI 542 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 HIL M +AI+APR +S APR+ + +I+P+ I VIG GG I+ +TE T T I+IED Sbjct: 543 HILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED 602 Query: 592 DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 G V IA+ DG A+ A R IE +T ++ G V+TG +TRI+ GAFV I GKEG++HI Sbjct: 603 GGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGMIHI 662 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE-----QSQPAAAPEAP 705 SQ+++ RVEKV D +++G +V V++ E+D +GRI L+++ + QS+PA P AP Sbjct: 663 SQLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQNGEETQSEPAPTPVAP 721 >UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydiae/Verrucomicrobia group RepID=PNP_OPITP Length = 730 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 329/718 (45%), Positives = 456/718 (63%), Gaps = 29/718 (4%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +T TG +A+ A AV V + +T VFVT + KPGQD+FPLTV+Y+E+ AAGR PG Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 +F+REGRPSE E L +RL DRP RPLFPEGF+NEVQ+I + S + DI + GAS Sbjct: 74 GYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVNGAS 133 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL++S IP+NGPI A RV I ++V NPT D++ S LDL+ G E +LM+E A Sbjct: 134 AALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEKDMLMIEGSADQ 193 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ---PEPVNEALNARVAALAEA 252 + E++ + A+ FGHE Q +++ I ELV + GKP+ + P + RV + Sbjct: 194 IPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEARTIIERV--VPTE 251 Query: 253 RLSDAYRITDKQERYAQVDVIKSETIATLLAE--DETLDENELGEILHAIEKNVVRSRVL 310 RL +A +K R V ++K E A L AE + + +L + ++ R VL Sbjct: 252 RLIEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQYKAYRKTVL 311 Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R DGR + IR L + GVLPR HGSA+F RG+TQ + TLG +DAQ LD L G Sbjct: 312 ERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTG 371 Query: 371 E-RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 ++ +FL HYNFPP+SVGETG P RREIGHG LA+R ++ V+P D FPY++RVVS Sbjct: 372 GVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYSIRVVS 431 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------DNYVVLSDILG 483 EI SNGS+SMAS+CG L+LMDAGVPI A VAGI+ GL+ + + +V ++DILG Sbjct: 432 EIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASDGSIEKWVTITDILG 491 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 +EDH GDMDFK+AG+ GI+ Q+D+KI G+ EI + A+ QA+ AR+ IL VM ++ A Sbjct: 492 EEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVMLGSLPA 551 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI--EDDGTVKIAATD 601 PR D+S++APRI TI+I+P+KI +IG GG IR +TE TG I+I +D G V + + + Sbjct: 552 PRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDSGKVFVYSNN 611 Query: 602 GEKAKHAIRRIEEITAE----------IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 E AI+ I+ + IEVG++YTG+VT + +FG FV G EGL H+ Sbjct: 612 AEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECTPGNEGLCHV 671 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATE--QSQPAAAPEAPA 706 S++AD RV + D ++MG + VK + +D R G++RLS K A + ++Q ++ APA Sbjct: 672 SELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRKAAMKELEAQKQSSEAAPA 729 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 319/697 (45%), Positives = 452/697 (64%), Gaps = 12/697 (1%) Query: 4 PIVRKFQ--YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 P RKF+ + +ETG M A + MV DT V V +K + G DFFPL+V Sbjct: 54 PHYRKFETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSV 113 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++E+ YAAGRIPGSF RREGRP E L +R++DRPIRPLFP+ N+V V TV+S++ Sbjct: 114 EFEEKLYAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLD 173 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 P + +I M GAS A+++S IP+NGPI VG ++ + VLNPT+++ + S L L +A Sbjct: 174 PDNSAEITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAA 233 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 +E ++M+E+ A + E M+ A+ GH + + ++ IN +V E GKP+ + P ++ Sbjct: 234 SEEKIVMIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKPKKTFTPVELDHG 293 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 L A V A + A DK R A + I + + AE L ++ I + ++ Sbjct: 294 LLADVYAKHLDEVKAAMDTDDKNVRDAALLPI----MDAIAAEHPELTAADIDLISYKLQ 349 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K VVR+ +L R+DGR + IR L G+LPR HGS +FTRG+TQ L TLG+ +D Sbjct: 350 KKVVRTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKD 409 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 AQ++D+L + ++ HYNFPPYSVGE SP RREIGHG LA+R ++ V+PD +F Sbjct: 410 AQLMDDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEF 469 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-----NYV 476 PYT+R VSE+ SNGS+S AS+CG++LALMDAGVPIKA VAGI+ GL+ +GD ++ Sbjct: 470 PYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWM 529 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG- 535 + DI G ED GDMDFKV G+R GI+A+QMDIK++G+T EI++ AL + + RL+IL Sbjct: 530 TMLDIQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDE 589 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 +++ I PR ++S +AP++ ++ I DKIKDVIGKGG VI+ + I+IE+DG V Sbjct: 590 IIKPVIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHV 649 Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 I+A D E AK AI I+ I + E+G +Y G+VTR+++FGAFV I GKEGLVHIS++ Sbjct: 650 FISAVDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLD 709 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 D RVE V D + +G + V V ++D+QGRI LS K+A Sbjct: 710 DHRVEHVEDVVAVGDPIFVMVTDIDQQGRINLSRKDA 746 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 306/690 (44%), Positives = 454/690 (65%), Gaps = 7/690 (1%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 + G ++ ETG +A+QA +V+V +T V V +PG DFFPL +Y+ER A Sbjct: 11 KIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMCDYRERLAA 69 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AG+ PG F +REGRPS E L +RL+DRPIRPL+P G+ +EVQV A V++ + Q + D++ Sbjct: 70 AGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASDLQNDGDVL 129 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 AMIG + AL +S +PF GP+G+ RVG ++ + V PT D+L++S+LD++V+G+ V M+ Sbjct: 130 AMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSGSRDMVAMI 189 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E A + ED+M+ A+ F H+ + VI E K+ + +Q P ++ L R+ Sbjct: 190 EGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQ-SPEDDGLLQRLTDA 248 Query: 250 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE---NELGEILHAIEKNVVR 306 + A + + KQ R V ++ +A ++ + D N + H +E+ VVR Sbjct: 249 YYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWHDLEEKVVR 308 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 +LAG R DGR+ + +R + T +LPR HGSALF RGETQAL+T LGT+RD Q +D Sbjct: 309 DLILAGT-RPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVD 367 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 L E + F+ YNFP YSVGE + P RREIGHG LA+R V V+P D FPYT+R Sbjct: 368 GLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYTIR 427 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG-DNYVVLSDILGDE 485 V+S+ITESNGSSSMASVCGA+L LM +GVPI VAGI++GLV++G DN+ +++DILG E Sbjct: 428 VISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCLITDILGTE 487 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 DH GDMDFK+AG+++GI+ +Q+D+K+ G+T +I++ L Q++ AR+ IL M I PR Sbjct: 488 DHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKMLTTIPRPR 547 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 +IS APR+ KI+PDKI +IG GG IR + E TG IE++D+GTV +A+++ E A Sbjct: 548 REISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLVASSNKESA 607 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + A+R++E TA +++G++Y G V+ I +FGAFV I G++GLVHIS+++ + + Sbjct: 608 QEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGGYISSLDQV 667 Query: 666 LQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 + +G + V V++VD R++LS ++A E+ Sbjct: 668 IAVGDAMKVLVIDVDEHDRVKLSRRKALEE 697 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 294/469 (62%), Positives = 361/469 (76%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N IV++FQ+G H V +ETG +ARQA+ AV++ MDDT V TVVG K KPGQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y E+TYAAG+IPG FF+REGRPSE ETL +RLIDRP+RPLFPEGF NEVQV+ V+S+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 NP+V DI A++ ASAAL++SG+PFNGP+GAARVGY + QY+LNP + +L S LDLVVA Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AVLMVESEAQ LSE+ MLGAVV+GHEQ Q+ I I++LV+E GKP WDWQ P NE Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 AL A+V+ L A L AY++ K R ++ + + A L D E+ IL + Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +VR ++L GEPRIDGR+ +R +++R+ VLPR HGSALFTRGETQALV ATLGT Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 D Q++D L GE D F+ HYN PP++ GETG VGSPKRREIGHGRLAKR ++ V+P D+ Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 F YT+R+VSEITESNGSSSMASVCG LALMDAGVP+KA VAG+AMGL+ Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLI 469 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 126/204 (61%), Positives = 164/204 (80%) Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 GDMDFKVAG+ + I+ALQMDIK++GITKEIMQVAL QAK RLHILG M+ A+ R ++ Sbjct: 521 GDMDFKVAGTDNCITALQMDIKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTEL 580 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 S APR+ T+KINP+KI+DVIGKGGS I+ALT+ETG TI+I++DGT+ IA+T E A Sbjct: 581 SAHAPRMITVKINPEKIRDVIGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEA 640 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 RRIE ITAE EVG++Y+G V +++DFGA V I GK+GL+HIS+IA++RV +V+DY++ Sbjct: 641 KRRIEGITAEAEVGKIYSGTVLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKE 700 Query: 669 GQEVPVKVLEVDRQGRIRLSIKEA 692 GQ V VK+L D +GR+RLSIK A Sbjct: 701 GQLVRVKLLSTDEKGRMRLSIKAA 724 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust. Identities = 333/704 (47%), Positives = 449/704 (63%), Gaps = 5/704 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + +V +F+ + LETG +A+QAT AV+V+ +T VT V K+ K DFFPLTV Sbjct: 1 MKKVVEEFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEK-DYDFFPLTV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++ E+ YA GRIPG + +REG+ S+ TL AR+IDRPIRP FP+GF EV ++AT + Sbjct: 60 DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVAD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVV 179 Q PD + + GASAAL G PF+GP R+ ++++NPT E +ES L+L + Sbjct: 120 GQNPPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTI 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT + MVE+ A +SE+ ML A+ FG E + + ++ + Sbjct: 180 AGTADYISMVEAGANEVSEEDMLAAMNFGQEAIAAFCDAQQRFLDQLDCTPLEYAIHTAD 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE-TLDENELGEILH 298 + RV A EA ++ A R DK R A+V+ +K+ + +++E +++ L Sbjct: 240 PRIAERVNA-HEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAAALK 298 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 A+EK +R ++ R+DGR D IR L +R G LPR HGS LF RG+TQAL TLGT Sbjct: 299 ALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGT 358 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 R+ Q LD + ++ YNFPPY GE G +G+PKRREIGHG LA+R ++ V+P Sbjct: 359 LREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSE 418 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D FPY +RVVSEI ESNGSSSMAS CG++LALMDAGVPI A V+GIAMGL+KEGD V+L Sbjct: 419 DDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVIL 478 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI G ED LGDMDFKV G+ GI+ALQMD K G++ EI+ AL QAK R IL M Sbjct: 479 SDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILSAML 538 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + I+ PR ++SEFAPRI TIKI +KI+DVIG GG VIR L +ETG TIE+E+DGTV IA Sbjct: 539 EQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTVHIA 598 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 A +G + A + I +I E EVG +Y G+V I DFGAFV + GK+GL+HIS++A+ R Sbjct: 599 AVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMANGR 658 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAP 702 V +V D L +G V V+V+EV G+I L + + Q ++ P Sbjct: 659 VGQVEDVLNLGDAVKVEVIEVGDNGKISLDRIDKPDAPQGSSRP 702 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 600 bits (1547), Expect = e-170, Method: Compositional matrix adjust. Identities = 324/688 (47%), Positives = 451/688 (65%), Gaps = 4/688 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + G+ + ETG +A+QA +V DT + T K + G DFFPL V+++E Sbjct: 4 IYRVRIGEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R Y+AG+IPG F +REGRPS+ L AR+IDR IR LF ++V V++TV+SV+ Sbjct: 64 RFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+I+A+ ASAAL++S IP+ GP+GA R+GYI+ V+NPT++ ++ S L+LVV+G Sbjct: 124 PNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVSGHSDG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 + MVE+ AQ + ED ++ A+ + + ++ + +E GK + P ++ Sbjct: 184 ITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVPEIDCW 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V ++ +++A I DK++R A + ++ E G + H + K ++ Sbjct: 244 VETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPDKGGYISGAVEHWV-KAMM 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT-ARDAQV 364 R + + R DGR+ D +R L VLP+ HGSA+FTRGETQ+L TATLG D Q+ Sbjct: 303 RKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQL 362 Query: 365 LDEL-MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 +D L E +FL HYNFPPYSVGE + P RREIGHG LA+R + ++PD +FPY Sbjct: 363 IDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDDTEFPY 422 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 VRVVS+I ESNGSSS AS+CG SLALM AGVPIK VAGIAMGL+KEGD+ VVL+DI G Sbjct: 423 VVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVLTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 EDH GDMDFKVAG+R+G++ALQMD K GIT+EI++ AL QAK AR+ IL VMEQAI+ Sbjct: 483 LEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVMEQAISN 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 P GD+S APR++T+ IN DKI+DVIG GG VIR +T+ETG + I+DDG + IA E Sbjct: 543 P-GDLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIAGASQE 601 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + AI+ I++I E++ G V+ GKVTR++ FGAFV + GKEGL+H+S+I+ RV KV Sbjct: 602 EVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHRVGKVE 661 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 D + G V V V E+D GRI L+ K+ Sbjct: 662 DVFKPGDPVLVMVREIDDMGRINLTRKK 689 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 333/697 (47%), Positives = 446/697 (63%), Gaps = 12/697 (1%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAA 70 YG+ ETG +A+QAT AV+V +T V VT V + K DFFPLTV++ E+ YA Sbjct: 11 YGKE-YAFETGELAKQATGAVLVKQGETTVLVTAVISAQEK-DYDFFPLTVDFMEKMYAV 68 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 GRIPG + +REG+ S+ TL AR+IDRPIRP F +GF EV V+AT +++ Q PD + Sbjct: 69 GRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDGQNPPDCIC 128 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAAVLM 188 + GASAAL + PF+GP R+ + ++++NPT +E + S L+L +AGT + M Sbjct: 129 VGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTIAGTRDYISM 188 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINE-LVKEAGKPRWDWQPEPVNEALNARVA 247 VE+ A ++E+ ML A+ FG E + E L A +PR +W + ++ RV Sbjct: 189 VEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPR-EWPIHVPDASIAERVD 247 Query: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE-NELGEILHAIEKNVVR 306 A + +S A + DKQ R A+V+ +K+ A +E+E +++ L ++EK+ +R Sbjct: 248 AHFD-EMSAALKDADKQSRIAKVEELKAAIKANDFSEEEQAAWGSDIAAALKSLEKHAMR 306 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V+ R DGR D IR L +R G LPR HGS LF RG+TQAL TLG +AQ LD Sbjct: 307 RMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLNEAQRLD 366 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 + ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P D+FPY +R Sbjct: 367 TIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSEDEFPYAIR 426 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 VVSEI ESNGSSSMAS CG+ LALMDAGVPIKA V+GIAMGL+KE D V+LSDI G ED Sbjct: 427 VVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVILSDIQGLED 486 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M I PR Sbjct: 487 FLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHILNAMLAEIPGPRE 546 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 ++ + APRI TI I DKI++VIGKGG IR + + TG +IEI++DGTV IA+ D E + Sbjct: 547 ELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGTVHIASVDQEAGR 606 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 A +E I E EVG VY G V I FGAFV + K+GL+HIS++A+ RV KV D L Sbjct: 607 AAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRMANGRVSKVEDVL 666 Query: 667 QMGQEVPVKVLEVD-RQGRI---RLSIKEATEQSQPA 699 MG V V+V+E+D + G++ RL +A E S+PA Sbjct: 667 NMGDTVKVQVIEIDPKSGKVSLDRLEKPDAPEGSEPA 703 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 597 bits (1539), Expect = e-169, Method: Compositional matrix adjust. Identities = 336/695 (48%), Positives = 451/695 (64%), Gaps = 25/695 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVV-GQKKAKPGQDFFPLTVNYQERTYAAGRIP 74 +T ETG +A+QA + + M D V TV G++K DFFPLTV Y+E++YAAGR+P Sbjct: 29 ITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEEK---DGDFFPLTVEYREKSYAAGRLP 85 Query: 75 GSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 G + +RE GRPS+ E L AR+IDRPIRP+FPE F EVQVI V+S + + PD++ + Sbjct: 86 GGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVLSSDKKFAPDVLGVSA 145 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 AS ++ LS +PF + A RV ++ Q ++ PT D++ + LDLVVAGTE +V MVE A Sbjct: 146 ASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLVVAGTEDSVCMVEGGA 205 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR 253 +SED M+GA++ GHE + + + ELV KP+ + +P+ V E + VA + + Sbjct: 206 YEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFVGEEHDKLVATVKDVV 265 Query: 254 L----SDAYRITDKQERY-AQVDV----IKSETIATLLAEDETLDENELGE---ILHAIE 301 D + K + Y A D+ ++ I ++ E E + + I +E Sbjct: 266 WDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQNAQLAADAKGIFSDLE 325 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 + +R +L R+DGR +R +++ GVLPR HGSA+F RGETQ LV TLGT D Sbjct: 326 RTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRGETQGLVICTLGTKAD 385 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Q + L GE +++ HYNFPP+SVGE +G RREIGHG LA+R + AV+P + F Sbjct: 386 EQRFESLQGEGAKSYMLHYNFPPFSVGECKKLGL-SRREIGHGHLAERSLAAVLPLPEDF 444 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL------VKEGDNY 475 PYT+RVVSEI ESNGSSSMASVCG L+LMDAGVPIKA VAGIAMGL VKEG Sbjct: 445 PYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLISEKGSVKEGGKI 504 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 +LSDI G EDHLGDMDFKV G+ +GI+A QMDIKI GIT E+M+ AL QA+ R+HILG Sbjct: 505 KILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMREALEQARQGRIHILG 564 Query: 536 VM-EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 M E + APR +SE AP + ++I KI+DVIG GGSVI+ + +TG TI I+D+G Sbjct: 565 RMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGMQAQTGCTINIDDNGN 624 Query: 595 VKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 + IAA G+ + R IEE+TAE E GR Y GKV I FGAFV I G++GLVHIS++ Sbjct: 625 IDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFVEILPGRDGLVHISEL 684 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 AD+RV+KV D + +G EV V L VD +G+++LS+ Sbjct: 685 ADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust. Identities = 302/686 (44%), Positives = 446/686 (65%), Gaps = 3/686 (0%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 T+ ++ + + +++S DT V + K + G DFFPL++ Y+ER Y+ G+I Sbjct: 12 RTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYEERLYSVGKI 71 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 PG F +REG+PSE L AR IDRP+RPLFP+G+ N+VQV+ TV+SV+ P+IVAM G Sbjct: 72 PGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNLPNIVAMNG 131 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 AS AL +S IPF P+G+ VG ++ +++NP ++ ++S L+L V T+ V+MVE+ A Sbjct: 132 ASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKERVMMVEAGA 191 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR 253 + ED M A++FG E+ + + E++K+ GK + + VNE L V A Sbjct: 192 CEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKKDEPDLYKVNEDLEEEVRGFAFDM 251 Query: 254 LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGE 313 + DA I D+ ER + I E + +ED +++++ ++++ ++K +VR +L Sbjct: 252 IKDAMYIVDRDERNKVLKDI-DEKLEEQFSEDYADNKSDIADVVYRVKKEIVRGMLLKEH 310 Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R+DGRE D +R + G LPR HG+ LFTRG TQ + TLG+ D Q+LD + E + Sbjct: 311 RRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQILDGVGLEDS 370 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 ++ HYNFP YS GE + P RREIGHG LA++ + ++P ++FPYT+R+VSE+ Sbjct: 371 KRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQFPYTIRLVSEVLS 430 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--NYVVLSDILGDEDHLGDM 491 SNGS+S AS+CG++LAL+DAGVPIK AGIAMGLV D +L+DI G ED GDM Sbjct: 431 SNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILTDIQGLEDFFGDM 490 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 551 DFKV G+ GI+A+Q D KI G++ + ++ L +A+ ARL+IL M+Q I R ++S++ Sbjct: 491 DFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQCIPEHRAEVSKY 550 Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 AP+ + + I PDKI+DVIG GG VI + ETG I+I++DG + + + D E AK A++ Sbjct: 551 APKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMSEDSEGAKKALKI 610 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 I+++T EI VG +Y GKVT+I +FGAFV I GKEGLVHIS++ RV KV D + +G E Sbjct: 611 IDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRVNKVEDIVSVGDE 670 Query: 672 VPVKVLEVDRQGRIRLSIKEATEQSQ 697 + VKV+E+D QGRI LS K+A + S+ Sbjct: 671 ILVKVIEIDNQGRINLSRKDAIKDSE 696 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 332/691 (48%), Positives = 463/691 (67%), Gaps = 8/691 (1%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + ETG +A QA AV + T V VT Q + FFPLTV Y E+ YAAG Sbjct: 15 GGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDR-DLGFFPLTVEYSEKMYAAG 73 Query: 72 RIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 RIPGSFFRRE GRPSE ETL++RLIDRPIRPLFP+G +EVQV+A V+S + + D++A Sbjct: 74 RIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVISSDQNNDSDVLA 133 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 + GAS AL LS IPF+GP+ AR+G I+ Q+V+NPT E++ S L++V+A + AV+MVE Sbjct: 134 VTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVLAASRDAVVMVE 193 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 EA + E ++ A+ +GH++ Q +I +L + AGK + ++ + L ARVAALA Sbjct: 194 GEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKAKREFTAPVEDADLAARVAALA 253 Query: 251 EARLSDAYRITDKQERYAQVDVIKSETIATLLAE----DETLDENELGEILHAIEKNVVR 306 A L A RI +K R +K + + L+A+ ++T +G+IL A+EK +VR Sbjct: 254 TADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPLRAVGDILSALEKRIVR 313 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 R++ RIDGR+ +R + + G+LPR HGSALF RGET++LV ATLG++ D Q +D Sbjct: 314 ERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVATLGSSTDEQRMD 373 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 L G+ T F+ HYNF PY VGE V RREIGHG LA++ + ++P + FP+T+R Sbjct: 374 SLTGDVTKRFMLHYNFAPYCVGEVKPV-RVSRREIGHGALAEKALRPILPLGEDFPFTLR 432 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 VV+E ESNGSSSMA+VCG L+LMDAGVPI A VAG+AMGL+KEGD YVVL+DILGDED Sbjct: 433 VVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMGLIKEGDQYVVLTDILGDED 492 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 LGDMDFK+AG+ +GI+A+QMDIK++G+ ++M A+ QA+ ARLHILG M + + APR Sbjct: 493 ALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQARDARLHILGEMGKVLEAPRA 552 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 ++S +AP+ + +NPD I+ +IG GG I+A+T TG +I+IED G V I A E + Sbjct: 553 ELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASIDIEDSGRVSIFAPTLEAME 612 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 A ++ ++G+ YTGKV ++++ GA V I E LVHISQ+ RVE+ +D Sbjct: 613 MAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEALVHISQLDTNRVEQASDVA 672 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 ++G+++ VKV+E++ RIR S K + Q Sbjct: 673 RLGEDMVVKVIEINGD-RIRASRKAVLLEEQ 702 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 314/685 (45%), Positives = 455/685 (66%), Gaps = 10/685 (1%) Query: 15 TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIP 74 +++LETG +A+QA +V+ + DT V T +FFPLTV+Y+E+ A G++P Sbjct: 17 SLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNE-SNFFPLTVDYREKFAAGGKVP 75 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 G F +REGRP++ ETL +RLIDR IRPLFP+GF ++V V+ V+S + D++A +G+ Sbjct: 76 GGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDFDADVIAGVGS 135 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ 194 SAAL LSG PF GP RVG ++ Y++NPT + +ES +DLVVAG E A++MVE EA+ Sbjct: 136 SAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAGKEDALVMVEGEAE 195 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR-WDWQPEPVNEALNARVAALAEAR 253 +SE+ M+ A+ H + + + + LV++AG+P ++W+ + V E L R+ + Sbjct: 196 EISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEADRVPEQLVQRMREEYGPK 255 Query: 254 LSDA-YRITDKQERYAQVDVIKSETIATLLAEDETLDE----NELGEILHAIEKNVVRSR 308 ++D + K+ + + +K + + +L + E +++ + + +EK +R+ Sbjct: 256 VADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDIRDAIGEVEKGEMRNM 315 Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 ++ RIDGR++ +R L + G LPR HGSA+FTRGETQ L + TLGT+ D Q +DE+ Sbjct: 316 IVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVDEV 375 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 428 + +F HY FPP+SVGE + PKRREIGH LA+R + V+P+ D+FPYT+R+ Sbjct: 376 FADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVIPEQDEFPYTIRIN 435 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488 +++ ESNGSSSMASVC SLALMDAGVPI+ VAGIAMGLV+E D VL+DILG EDHL Sbjct: 436 ADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDETTVLTDILGQEDHL 495 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 GDMDFK+ G+RDGI+A QMD+KIEG+++++M AL Q++ AR HIL ME+ I PR ++ Sbjct: 496 GDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHILDRMEETIAEPRAEL 555 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD---GTVKIAATDGEKA 605 S APR+ + I+PD+I VIG GG V++++ EET T I +E++ G V IAAT+ A Sbjct: 556 SSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEEGVGIVTIAATNQRDA 615 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + AI RI++I A E G Y G V I DFGAFV I K GL+H+S+I VE V DY Sbjct: 616 EAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLHVSEIDYDYVENVEDY 675 Query: 666 LQMGQEVPVKVLEVDRQGRIRLSIK 690 L++G +V V +LEV G++RL+ K Sbjct: 676 LEVGDKVKVHLLEVHDDGKMRLTRK 700 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 577 bits (1486), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/685 (44%), Positives = 444/685 (64%), Gaps = 10/685 (1%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAA 70 +G+ + ++ G +A+Q+ +V V D+ V T + G DF PLTV YQE+ YAA Sbjct: 11 FGRKMI-VQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYAA 69 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 G+IPG F +REG+PSE L ARLIDRPIRPLFP+ N+VQ+I TV+SV+ PD+ Sbjct: 70 GKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVTG 129 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 +I AS AL++S IPF G + R+GY++ ++V+ PT+++L++S+LD+VVAG++ A+ MVE Sbjct: 130 IIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMVE 189 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL- 249 EA+ ++E++M+ A++ H+ + +I+ E++ + + + + NE L + + Sbjct: 190 GEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETLIGKFEEMI 249 Query: 250 AEARLSDAYRITDKQERYAQVDVIKSETIATLLAE------DETLDENELGEILHAIEKN 303 +E L D I +K ER A++ + + + + + ++ L E+ L E K Sbjct: 250 SEEELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLLKEYFDERTKK 309 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 ++R ++ R DGR+ D IR + GVLPRTHGSALFTRGETQ+L TLG + Q Sbjct: 310 LMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEEQ 369 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 ++D +M E T F+ HYNFPP+SVGE + P RREIGHG LA+R + AV+P ++FPY Sbjct: 370 IVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFPY 429 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 VRVVSEI ESNGSSSMA+VC SLALMDAGVPI+ VAG+AMGL+ E VVL+DI G Sbjct: 430 VVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQG 489 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 EDH GDMDFKVAG+R+GI+A QMD K+ G+ +E+++ AL QAK AR+ IL +M I Sbjct: 490 LEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIEK 549 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATDG 602 PR +S +AP I TI+I+P K+ ++IG GG VI+++ +E I I+D G V I D Sbjct: 550 PRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKDQ 609 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 +K AI I+ IT +IEVG V+ GK+TRI +G FV + GK GL H S++ + + Sbjct: 610 KKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAHSSKLGEDS-KNF 668 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRL 687 + ++G + V V+ +D GRI+L Sbjct: 669 KEKYKIGDTIKVIVVNIDENGRIQL 693 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 314/678 (46%), Positives = 432/678 (63%), Gaps = 15/678 (2%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSF 77 +E G +A+QA AV+ + DT V T V A G DF PLTV +QER YAAG+IPG F Sbjct: 15 VEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEFQERFYAAGKIPGGF 74 Query: 78 FRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 +REG+PSE L AR IDRPIRPLFP+ NEVQV+ TV+S + PDIV + AS A Sbjct: 75 IKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPDIVGVFAASLA 134 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLS 197 L++S IPFNG + A RVG ++ + VL PT+D+L++S LD+VVAGTE + MVE EA+ +S Sbjct: 135 LNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTEDTITMVEGEAKEVS 194 Query: 198 EDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR-LSD 256 E QML A++ H+ + +I E++ + + + E + + L + L + Sbjct: 195 ESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIEKEFSQLLDGNELRE 254 Query: 257 AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR---SRVLAGE 313 I K+ R + + L A T EL +L + ++ R++ E Sbjct: 255 RLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYEEALKYKMRRIIVEE 314 Query: 314 -PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R+D R+ IR + TG+LPR HGSALFTRGETQ+L TLG D Q++D L+ E Sbjct: 315 GTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQIIDSLLEEG 374 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 T F+ HYNFPP+S GE + P RREIGHG LA+R + V+PD D+FPYT+R+VSEI Sbjct: 375 TKRFMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDEDRFPYTIRIVSEIL 434 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 492 ESNGSSSMA+VC SLALMDAGVPI VAG+AMGL+ E D+ +VL+DILG EDH GDMD Sbjct: 435 ESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVLTDILGAEDHWGDMD 494 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG+RDGI+A QMD K+ G++ ++++ ALNQAK ARL++L + + I+ PR +S++A Sbjct: 495 FKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLYETISKPRDTLSKYA 554 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATDGEKAKHAIRR 611 P I I I+P K+ ++IG GG +I+AL ++ I ++D G V + + EK AI + Sbjct: 555 PVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSVIGGNEEKVDAAIEQ 614 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY--LQMG 669 I I EI VG V++GKVTRI FG FV I GK GL+H S++ +TD +++G Sbjct: 615 INSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKL-------ITDLKTVKIG 667 Query: 670 QEVPVKVLEVDRQGRIRL 687 + + VKV +D GR++L Sbjct: 668 ETMRVKVSNIDNLGRLQL 685 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust. Identities = 322/711 (45%), Positives = 454/711 (63%), Gaps = 15/711 (2%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L + +F+ + ETG +A+QAT AV+V +T V VT V K+ K DFFPLT Sbjct: 30 ILEKVSLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEK-DYDFFPLT 88 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V++ E+ YA GRIPG + +REGR S+ TL AR++DRPIRP F EGF EV V+AT ++ Sbjct: 89 VDFMEKMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAI 148 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLV 178 + + PD + + GASAAL ++ PF+GP+ R+ + ++++NPT E + S L+L Sbjct: 149 DGENAPDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELT 208 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 +AGT+ + MVE+ A + E+ ML A+ FG E + E + + +W Sbjct: 209 IAGTKDYISMVEAGADQVGEEDMLAAMNFGQEAIAAFCEKQAEFLSMVDIQKREWPIHVP 268 Query: 239 NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE-TLDENELGEIL 297 + ++ RV A +A +S A + DKQ R A+V+ +K+ +++E +++ Sbjct: 269 DASIAERVNAHYDA-MSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDIAAAC 327 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK+ +R ++ R DGR + IR L +R G LPR HGS LF RG+TQ + ATLG Sbjct: 328 KALEKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLG 387 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 +AQ LD + + T ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P+ Sbjct: 388 LLNEAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPN 447 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 D+FPY++RVVSE+ ESNGSSSMAS CG+ LALMDAGVPIKA V+G+AMGL+KE D V+ Sbjct: 448 EDEFPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVI 507 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G ED LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHILSAM 567 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I APR ++ + APRI TIKI +KI++VIGKGG IR + + TG +IEI++DGTV I Sbjct: 568 LDEIAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDGTVHI 627 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 AA D A++ +++I E EVG VY G V I FGAFV + K+GL+HIS++A+ Sbjct: 628 AAVDQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISRMANG 687 Query: 658 RVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAA 707 RV +V D L +G V V+V+E+D + G++ L E P+APA+ Sbjct: 688 RVGQVEDVLNLGDTVKVEVIEIDSKTGKVSLDRLE---------KPDAPAS 729 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 317/684 (46%), Positives = 440/684 (64%), Gaps = 8/684 (1%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 G + +TG +A+QA AAV+ S +T + T K + G DFFPL V+++ER Y Sbjct: 7 LNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEERYY 66 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP-D 127 AAG+IPG + +REGRPS+ L AR++DR IR LF + N+V V+ATV++V+ Q NP + Sbjct: 67 AAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVD-QKNPAN 125 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 I+A+ AS AL++S IP++GP+GA R+G I+ + V+NPT+D + ES LDL VAG + Sbjct: 126 ILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHAGGIT 185 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN-EALNARV 246 MVE+ A+ + E+ ++ A+ ++ + ++ ++ E G+P+ P P+ E ++ V Sbjct: 186 MVEAGAREVPEELLVNALQTAQDEIKKIVAFQLQVRAEIGQPKA-VLPAPLAIEEIDRWV 244 Query: 247 AALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR 306 + A I K+ER A + + +T A A+ E+ + + ++ K+ +R Sbjct: 245 KDNLREETAKAVMIHGKKERGAAISALVEKTTAHF-ADLYADAESYIAGAVESLVKSTMR 303 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT-ARDAQVL 365 + + R DGR D IR + VLP+ HGSALFTRGETQALV TLG D Q++ Sbjct: 304 TITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQII 363 Query: 366 DEL-MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 D L + E FL HYNFPPYSVGE + P RREIGHG LA+R + ++P ++FPY Sbjct: 364 DGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEEFPYV 423 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 VRVVS+I ESNGSSS AS+CG SL++M AGVP+K VAGIAMGL+KEGD+ V+L+DI G Sbjct: 424 VRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTDIQGL 483 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 EDH GDMDFKVAG+RDG++ALQMD K GIT+EI+ AL QA AR+ IL ME I P Sbjct: 484 EDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETCIPEP 543 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 +S APRI T+ I+ DKI+DVIG GG VIR + +E+G I +EDDG+V I A + Sbjct: 544 -APLSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAVSPDS 602 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + A + I +I E+E G + G VTR++ FGAFV + GKEGL+HIS+I+ K + KV D Sbjct: 603 VEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIGKVED 662 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLS 688 G V V+V E+D Q RI LS Sbjct: 663 VFAPGDHVIVEVKEIDDQNRINLS 686 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 297/683 (43%), Positives = 422/683 (61%), Gaps = 7/683 (1%) Query: 15 TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIP 74 T+T++ G + QA A ++ DT V T K+ + G DFFPL+V Y+E+ YA G+IP Sbjct: 59 TLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEEKLYAVGKIP 118 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 G F +REG+ SE L +R+IDRP+RPLFP+ + N+V + V+SV+P+ P++VAM+GA Sbjct: 119 GGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECRPELVAMLGA 178 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ 194 S A +S IPF+GP ++G I+ ++V+NP+Q++ K L L VA T V+M+E A Sbjct: 179 SIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVASTSQKVIMIECGAN 238 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV-NEALNARVAALAEAR 253 + E +M+ A+ HE Q +I+ IN++V E GKP+ ++ + E +A A + Sbjct: 239 EVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPKHSYESCAIPQEMFDAMKAIVTPEE 298 Query: 254 LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGE 313 + A DKQ R A +D I + +E L LGE ++ +K VR +L Sbjct: 299 MEVAVFTDDKQTREANIDAITEKFKEAFADNEEWL--AILGEAVYQYQKKTVRKMILKDH 356 Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR IR L ++PR HGSA+FTRG+TQ TL +AQ +D L T Sbjct: 357 KRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQKVDGLDENVT 416 Query: 374 -DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 ++ HYNFP YSVGET P RREIGHG LA+R ++ V+P ++FPY +R VSE Sbjct: 417 AKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPYAIRAVSETF 476 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK--EGDNYVVLSDILGDEDHLGD 490 ESNGS+SMAS C + ++LM AGVPIK VAGI+ GLV D+Y+VL+DI G ED GD Sbjct: 477 ESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDTDDDYIVLTDIQGLEDFFGD 536 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG-VMEQAINAPRGDIS 549 MDFKV G+ +GI+A+QMDIKI G+T+ I++ A+ + + ARL I+ M+ AI PR ++ Sbjct: 537 MDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDTCMKPAIAEPRKEVG 596 Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 ++AP+I KI+P KI DV+G+ G I A+ EETG I+I DDG V I + E + A+ Sbjct: 597 KYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDINDDGFVSICGVESEGMQKAL 656 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 + I I + E G+++ GKV I +FGAF+ GKEG+VHIS+IA +R+ V D L +G Sbjct: 657 KYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVHISKIAKERINHVEDVLTLG 716 Query: 670 QEVPVKVLEVDRQGRIRLSIKEA 692 V L D+ GRI SIK+ Sbjct: 717 DTVRCICLGKDKMGRISFSIKDC 739 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 300/716 (41%), Positives = 434/716 (60%), Gaps = 35/716 (4%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + K + G+ + ETG MA+QA +V+ + ++V TV + DF PL+V Y E Sbjct: 4 ILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YAAG+IPG F +REG+P + E L++RLIDRP+RPLF + F E+QVI T ++ + Sbjct: 64 KYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 PDIV M A A+ LS IPFNGPI A R+ Y+N ++++NP+ +E+ +S LD+VVAG+ Sbjct: 124 PDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG-KPRWDWQPEPVNEALNA 244 + MVE A +SED +L A+ HE + + E + G K + E Sbjct: 184 ITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKE 243 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENE--LGEILHAIEK 302 + A L +A + K R + ++++++ + ++ D NE + EK Sbjct: 244 ELRDFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEK 303 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 +VR+ +L + R DGR + IR + +L RTHGS+LFTRGETQAL TLGT+ D Sbjct: 304 EIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDE 363 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETG--MVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 Q++D++ G++ F+ HYNFPP+SVGETG M G RREIGHG LA+R + +++P + Sbjct: 364 QIMDDIDGDKRLNFMLHYNFPPFSVGETGRLMTG---RREIGHGHLAQRALESMIPGKND 420 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 FPYT+RVVSEI ESNGSSSMA+VC S++LM AGVP+K VAGIAMGL+ EGD YVVLSD Sbjct: 421 FPYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSD 480 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 ILG+EDHLGDMDFKVAG+ +GI+ QMDIKIE +TK++M+ AL QA+ R+HIL +M Sbjct: 481 ILGEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSV 540 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 I+ R IS++AP+I ++I+ DKI VIG G ++A+T+E ++IE +G + + Sbjct: 541 ISNSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGD 600 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI------SQI 654 D K + A +IE I E +VG +Y G V +I FGAF+ + KEG + S+ Sbjct: 601 DDFKMQKAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKY 660 Query: 655 ADKRVEKVTDY---------------------LQMGQEVPVKVLEVDRQGRIRLSI 689 R Y L+ GQ + V+++++D+ G+I L I Sbjct: 661 GSGRFGHGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 301/700 (43%), Positives = 440/700 (62%), Gaps = 12/700 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G ++T ETG +AR A AV++SMD+T V TV K +DF PLT Sbjct: 3 VLETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTV-ASSKGDAARDFLPLT 61 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ +A G IP +F RREG P E E L RLIDRPIRPLFP GF +EVQV+A+V+S Sbjct: 62 VDYQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSS 121 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PD++A SAAL LS IP+ GPIG R+G I Q+++NP+ DEL S L+LV A Sbjct: 122 DGKQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYA 181 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T LM++ +A+ +SE + A+ H + ++ L AGK + ++ V++ Sbjct: 182 CTRDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSD 241 Query: 241 ALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 +V LAEA + + K ER +D+I + L E + L +++ Sbjct: 242 ITFEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVD 301 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K VVR R++A R+DGR + +R L +G LP HGS+LF+RG+TQ L T TLG Sbjct: 302 TVRKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 361 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 DAQ LD L+G T F+ HY+FPP+S+ E G RRE+GHG LA++ +LAV+P Sbjct: 362 PGDAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 421 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 ++FPYTVR+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAGI++GLV E D Sbjct: 422 EEFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNT 481 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +L+DILG EDHLGDMDFK+AG+R GI+A+Q+DIK GI +I+ L A RL Sbjct: 482 IKDYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRL 541 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL MEQ INAPR +PR+ T+K + D ++ ++G G++ R + EETG I + Sbjct: 542 QILDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVS- 600 Query: 592 DGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 DGT+ + A + +++ I EIE+G +Y G VT + ++GAFV GG++GL+H Sbjct: 601 DGTLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 660 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 IS+++ + V +V+D + +GQ++ + + D +G I+LS+K Sbjct: 661 ISELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLK 700 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 303/687 (44%), Positives = 429/687 (62%), Gaps = 12/687 (1%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 V ++G +A QA AV+ DT TV+ + K DFFPLTV+Y+E++YA G+IPG Sbjct: 18 VIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVDYEEKSYAVGKIPG 77 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 FF++EGRP++ E L ARLIDR IRP+FP+G NEVQV+ +++ + + PDIVA+ G + Sbjct: 78 GFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADMENPPDIVALNGTA 137 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL++S IP I RVGYI+ +YVLNPT E+ ES+LDLVVAGT +++M+E+ A Sbjct: 138 AALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGTRDSIVMIEAGAAE 197 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD-----WQPEPVNEALNARVAALA 250 + + ++G + F E + +I I EL ++ G+P+ + + E ++ N Sbjct: 198 VDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSFPQEQLDFMRNH------ 251 Query: 251 EARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVL 310 E R A KQER V +K +L LDE + +EK VVR+ + Sbjct: 252 EDRFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGEVEKEVVRAYMK 311 Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 + R+DGR D IR L + VLP+ HGS LF RG+TQ L T TLG+ D Q +D + Sbjct: 312 STRKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDVQFIDAIGL 371 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 E F+ Y+FPP+S GE P RREIGHG L +R + ++P + FPYT+RVVSE Sbjct: 372 EEFKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEEVFPYTIRVVSE 431 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + ESNGS+SMAS C +S+ALM AGVP+ V GIAMGL++ D VVL+DI G EDHLGD Sbjct: 432 VLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTDIQGLEDHLGD 491 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 MDFKVAG+R+GI+ALQ+D+K++GI+ E + A++QA+ AR IL V+ AI +PR +SE Sbjct: 492 MDFKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDAIPSPR-PLSE 550 Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR 610 APRI I+I DKI +VIG GG ++ +T+ETG TI+I +DG + E A + Sbjct: 551 TAPRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKGLTDESVNMAKQ 610 Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 ++E I + EVG T +V R+ A V I GK GL+H+S++++ R+ + D L +GQ Sbjct: 611 QVEMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRIRSLEDVLSVGQ 670 Query: 671 EVPVKVLEVDRQGRIRLSIKEATEQSQ 697 + V V E D +GR+R S KE ++ Sbjct: 671 TIKVWVKEKDGEGRLRFSAKEKKSEAH 697 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 298/702 (42%), Positives = 445/702 (63%), Gaps = 16/702 (2%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G V+ ETG +AR A +V++ MD+T V TV K P +DF PLT Sbjct: 49 ILESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSP-RDFLPLT 107 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ YA G IP ++ RREG P E E L RLIDRPIRPLFP GF +EVQ++A+V+S Sbjct: 108 VDYQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSS 167 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PDI+A +SAAL LS +P+ GPIG R+G I Q+V+NPT DEL S L+L+ A Sbjct: 168 DGKQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYA 227 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T +M++ +++ +SE + A+ H + + L ++AGK + +++ +++ Sbjct: 228 CTRDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSD 287 Query: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296 +VA LA R+ + TD K ER +D I + E + + L + Sbjct: 288 KTLEKVADLAATRIESVF--TDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKA 345 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 + + K VVRSR+++ R+DGR D +R + + LP HGSALF+RG+TQ L T TL Sbjct: 346 VDTVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTL 405 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416 G +AQ LD L+G F+ HY+FPPY E G G RRE+GHG LA++ +LAV+P Sbjct: 406 GAPAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLP 465 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--- 473 + FPYT+R+ SE+ S+GS+SMASVCG S+ALMDAG+P++A VAG+++GL+ + D Sbjct: 466 PEEAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSS 525 Query: 474 ----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 +Y +++DILG EDHLGDMDFK+AG+RDG++A+Q+DIK GI +I+ +L A+ A Sbjct: 526 GEIKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREA 585 Query: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589 RL IL ME+ IN+PRG ++PR+ T+K + D ++ +IG G + R + ETG + I Sbjct: 586 RLQILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI 645 Query: 590 EDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 D+GT+ I A + + + A +++ I E+ VG VY G V+ I ++GAFV GG++GL Sbjct: 646 -DNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGL 704 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 +H+S+++ + V KV+D L +GQ + +E D +G I+LS K Sbjct: 705 LHMSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRK 746 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 541 bits (1393), Expect = e-152, Method: Compositional matrix adjust. Identities = 326/731 (44%), Positives = 442/731 (60%), Gaps = 56/731 (7%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 +G T+ LETG +ARQA +V+ +D DT + T K + G DFFPLTV+ +ER YA Sbjct: 42 FGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFDFFPLTVDVEERMYA 101 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AGRIPGSFFRREGRP L RLIDRP+RP F +G NEVQVI TV+S++P+ D+V Sbjct: 102 AGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSLDPKDMYDVV 161 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYIND------QYVLNPTQDELKESKLDLVVAG-- 181 A+ ASA+ LSG+P +GP+G R+ I D Q+V PT+++ + + ++VVAG Sbjct: 162 AINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQHESALFEMVVAGRL 221 Query: 182 -------------------------TEAAVLMVESEA-QLLSEDQMLGA-------VVFG 208 A++MVE+ A + + E GA V G Sbjct: 222 TDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVNDGAPAPTESVVAEG 281 Query: 209 HEQQQVVIQNI---NELVKEAGKPRWDWQP--EPVNEALNARVAALAEARLSDAYRITDK 263 E + I + + +++A P + P P + A V + A+ R+SD I DK Sbjct: 282 IEAAKPFIAELCGAQQALRQAVDPETEEFPLFPPYGADVLAAVDSEAKGRISDIMSIADK 341 Query: 264 QERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDM 323 QER + +T+ LL E+ E E+ +A+ K VVRSR+LA RIDGR + Sbjct: 342 QERDEALSSDMDDTVEALL-EEFPEREAEIRAAHNAVTKEVVRSRILADGFRIDGRGVED 400 Query: 324 IRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFP 383 IR LDV ++PR HGS+LF RGETQ L TL T + Q +D L ++ HYNFP Sbjct: 401 IRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDHRRYIHHYNFP 460 Query: 384 PYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASV 443 PYS GETG VGSPKRREIGHG LA+R + ++P D FPYT+R VSE SNGS+SM SV Sbjct: 461 PYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVSEALGSNGSTSMGSV 520 Query: 444 CGASLALMDAGVPIKAAVAGIAMGL----VKEGDNYVVLSDILGDEDHLGDMDFKVAGSR 499 C ++L+L +AGVP+KA VAGIAMGL VK YV L+DILG ED GDMDFKVAG+ Sbjct: 521 CASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTDILGAEDAFGDMDFKVAGTE 580 Query: 500 DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIK 559 D I+ALQ+D K++GI +++ AL QA+ ARL IL M + I+ P +S++APRI TI Sbjct: 581 DFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEVIDEP-DPMSDYAPRITTIS 639 Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE- 618 + KI +VIG G I +TE+TG + IEDDGTV I+AT G A+ A+ RI EI Sbjct: 640 VPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISATSGGSAEAAVDRINEIANPQ 699 Query: 619 -IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQMGQEVPVKV 676 +VG + G V + FGAFV+I ++GLVHIS++ KR+EKV D + +G ++ V++ Sbjct: 700 LPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKKRIEKVEDVVNVGDKLEVEI 759 Query: 677 LEVDRQGRIRL 687 ++D +G+I L Sbjct: 760 ADIDNRGKISL 770 >UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 Tax=Actinobacteria (class) RepID=PNP_CORJK Length = 764 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 326/739 (44%), Positives = 445/739 (60%), Gaps = 65/739 (8%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 +G ++ ETG++ARQA AV +D DT + T ++ + G DFFPLTV+ +ER Y+ Sbjct: 31 FGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLTVDVEERMYS 90 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 GRIPGSFFRREGRP L ARLIDRP+RP F G NEVQVI TV+S++P+ D++ Sbjct: 91 VGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSMDPKDRYDVL 150 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYIND------QYVLNPTQDELKESKLDLVVAG-- 181 A+ GASA+ LSG+P +GP+G R+ + D Q+V PT+++ +++ +LVVAG Sbjct: 151 AINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAIFELVVAGRV 210 Query: 182 TE----------------------AAVLMVESEAQLLSEDQMLGAVVFG--HEQQQVVIQ 217 TE AV+MVE+ A D ++ + G ++VV Q Sbjct: 211 TEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGAT----DNVVERIAEGAPAPTEEVVAQ 266 Query: 218 NI--------------NELVK--EAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRIT 261 I N L K +A ++ P P E + A V A A L D I Sbjct: 267 GIEAAKPFIATLCEAQNALAKAVDAETREFELFP-PYGEDVFASVQAEALDALEDIMAIA 325 Query: 262 DKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREK 321 DKQER + + LL E E E+ + + K VVR R+L RIDGR+ Sbjct: 326 DKQERDEALAANMQANVDELLPEFPER-EAEIRAAHNEVTKAVVRRRILEDGFRIDGRDS 384 Query: 322 DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYN 381 IR L + ++PR HGSALF RGETQ L TL + Q +D L E + ++ HYN Sbjct: 385 TTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYIHHYN 444 Query: 382 FPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMA 441 FPPYS GETG VGSPKRREIGHG LA+R + V+P D FPYT+R VSE SNGS+SM Sbjct: 445 FPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGSTSMG 504 Query: 442 SVCGASLALMDAGVPIKAAVAGIAMGLV-----KEG-DNYVVLSDILGDEDHLGDMDFKV 495 SVC ++L+L +AGVP+KA VAGIAMGLV K G D YV L+DILG ED GDMDFKV Sbjct: 505 SVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDMDFKV 564 Query: 496 AGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRI 555 AG+ D ++ALQ+D K++GI +++ AL QA+ ARL IL +ME+AI++P D+S+ AP I Sbjct: 565 AGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAIDSP-DDMSDLAPHI 623 Query: 556 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEI 615 +I I +KI +VIG G I +TEETG I IEDDGTV I+A GE A+ A +I I Sbjct: 624 TSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEKINAI 683 Query: 616 T--AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQMGQEV 672 + +VG + G V + FGAFV++ G++GL+HIS + D+R+E+V D + +G ++ Sbjct: 684 ANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSVGDKL 743 Query: 673 PVKVLEVDRQGRIRLSIKE 691 V++ ++D +G+I L + E Sbjct: 744 EVEIADIDNRGKISLVLVE 762 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 304/754 (40%), Positives = 431/754 (57%), Gaps = 60/754 (7%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N + K +G + +ETG+M RQA++AV V+ +T V+ +V DF PL V+ Sbjct: 86 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G FF+REGR + E LI RLIDRP+RP P+GF NE Q+++ V+S + Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 PD +A+ A A++LS +P I RVG I ++++NPT E++ES+LDL +AGT Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEA 241 + A+L +E + L E+ +L AV G + Q I L K+ GKP+ D P E Sbjct: 266 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPE- 324 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEI----- 296 L V LA L+ A +I K R + ++ + + L + +DE G I Sbjct: 325 LYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPD 384 Query: 297 --------------------------------------------LHAIEKNVVRSRVLAG 312 + ++R R++ G Sbjct: 385 LLEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEG 444 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG-E 371 R DGR D IR ++ R G+LPR HGS LFTRGETQAL TLG + AQ +D L G + Sbjct: 445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 F Y FPP SVGE G +G+P RREIGHG LA+R + ++P D FPYT+RV S + Sbjct: 505 EYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTV 564 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY------VVLSDILGDE 485 ESNGSSSMASVCG LAL DAGVP+K +VAGIAMG+V + + + ++LSDI G E Sbjct: 565 IESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAE 624 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 D GDMDFKVAG+ DG++A QMDIK+ GIT EIM+ AL QAK R HIL M + P Sbjct: 625 DASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPT 684 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEK 604 +S++AP I +K++P K+ +IG GG ++++ EE+G I+++DDGTVKI A D Sbjct: 685 LSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVAS 744 Query: 605 AKHAIRRIEEITAEIEVGRVY-TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + A I +T VG +Y ++ + +GAFV I G+EGL HIS+++ + + K Sbjct: 745 LERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPE 804 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 D ++G + VK++EV+ +G++RLS++ +S+ Sbjct: 805 DAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESE 838 >UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G7_9CHLO Length = 838 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 308/738 (41%), Positives = 437/738 (59%), Gaps = 52/738 (7%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 P + G+ VT+ETG + RQA AVMV+ +T ++ T+ + F PLTVN Sbjct: 50 TPKTLTLRIGESEVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVN 109 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G + +R+G E ETLI RL+DRP+RP+ P+G+ + Q++ V+S + Sbjct: 110 YQERYSAVGRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDG 169 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVVA 180 + D +A+ AS A ++S +P PI RVG + + ++NPT ++++ S+LDLV+A Sbjct: 170 ARSTDALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLA 229 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AV+M+E L+ +ML A+ GHE ++I+ K+ G+ + + E Sbjct: 230 GTEDAVMMIEGFGDFLTTQEMLYAIEKGHEAVANACRDIDAWAKDVGRVKNEAAVLVAPE 289 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE---TLD-------- 289 ++ V AL A L++A I+ KQ R A V+ I++ I +L D+ T+ Sbjct: 290 GVDDAVRALVGAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQS 349 Query: 290 ---------------------------------ENELGEILHAIEKNVVRSRVLAGEPRI 316 EN++ E N +RS + A R Sbjct: 350 LRFAFCALLLFSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQ 409 Query: 317 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 376 DGR+ +R + G+LPRTHGS+LFTRGETQA+ ATLG A DAQ +D L ++ F Sbjct: 410 DGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRF 469 Query: 377 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 436 HY FPP SVGETG VG+ RRE+GHG LA+R ++ V+P D FP+TVR+ S ITESNG Sbjct: 470 YLHYFFPPSSVGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNG 529 Query: 437 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLV----KEGDNYVVLSDILGDEDHLGDMD 492 SSSMA+VC SLAL DAGVPI VAGIAMGL+ G+ V+L+DILG ED LGDMD Sbjct: 530 SSSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMD 589 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG DGISA QMDIK+EGIT +++ AL A+ +HILG M++A AP G +S +A Sbjct: 590 FKVAGDGDGISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYA 649 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAKHAIRR 611 P++ +++ I VIGKGG I+A+ E+T TI+I ++G V + + G A+ Sbjct: 650 PQVEVVEVPTKYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEI 709 Query: 612 IEEITAEIEVGRVY-TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 I +T E EVG+ Y +VT+++DFGAFV I G EGL H+S++ RV V D ++ GQ Sbjct: 710 IRSLTVEPEVGKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQ 769 Query: 671 EVPVKVLEVDRQGRIRLS 688 + VK+LE + +G+ +LS Sbjct: 770 TIDVKLLETNERGQFKLS 787 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 288/715 (40%), Positives = 433/715 (60%), Gaps = 38/715 (5%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVF-VTVVGQKKAKPGQDFFPLTVNYQERTYA 69 + + + +E G ++RQA +VM+ DT + V V G KK +F PLTVNYQE+ YA Sbjct: 17 FENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDKKN--SLNFLPLTVNYQEKLYA 74 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AG+IPG F RREG+PS+ E L +RLIDR IRPLF + F NEVQ+I V+S +P N + + Sbjct: 75 AGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDPDGNNENI 134 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 A++G+S AL +S IPF P+ + VG I D ++NPT + + S L++AGT+ ++ MV Sbjct: 135 ALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGTKDSLNMV 194 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV--- 246 E ++ +SE+ L ++ FGHE + + E+ + GK + VN L + Sbjct: 195 EMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLLEVEIKDK 254 Query: 247 ------------AALAEARLSDAYR------ITDKQERYAQVDVIKSETIATLLAEDETL 288 + + SD + + + +E++ K + L E++ L Sbjct: 255 YFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNN---KKDNFNLLDLENQKL 311 Query: 289 DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGET 348 NE+ I + + ++R +L R DGR IR + R +LPRTHGSALFTRG T Sbjct: 312 YLNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFTRGGT 371 Query: 349 QALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK 408 Q+L TLGT R+++++D+L E F+ HYNFP ++VG G +P RREIGHG LA+ Sbjct: 372 QSLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHGMLAE 431 Query: 409 RGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 + + V+P + FPY++RVVSEI +SNGSSS A++C +S+ALM AGVP+K+ VAG+AMGL Sbjct: 432 KALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGVAMGL 491 Query: 469 VKEG----DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 524 + + ++Y +LSDI G ED+ GD+DFK+AG++ GI+ALQ+DIKI+GIT EI + L Sbjct: 492 IVDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFEKVLE 551 Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE-T 583 QAK R+ IL ME+ IN R ++S++AP++ I I P+KI+D+IG GG +I + E+ Sbjct: 552 QAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQIIEKHD 611 Query: 584 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD------FGA 637 I+I DG + I + E + I+ +I+V VY K+ R V FGA Sbjct: 612 NVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDKTFGA 671 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 I G EG +HIS++ + +V+KV D L++GQ + VK ++++ +G+I LS K+ Sbjct: 672 IAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKKDV 726 >UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 Tax=Actinobacteridae RepID=PNP_BIFLI Length = 914 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 312/731 (42%), Positives = 441/731 (60%), Gaps = 39/731 (5%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDD-TAVFVTVVGQKKAKPGQDFFPLTVNY 63 ++ +G+ T+ ETG +A+QA AV +DD + + T K DFFPLTV+ Sbjct: 12 VIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLTVDV 71 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +E+ YAAG+IPGSFFRREGRPS L R+IDRP+RPLFP NEVQV+ TV++VNP Sbjct: 72 EEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAVNPD 131 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT- 182 D++A+ ASA+ +SG+PF GP+ R+ I+ Q+V P E + + ++VVAG Sbjct: 132 DAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVAGRV 191 Query: 183 ----EAAVLMVES------------EAQLLSEDQML-GAVVFGHEQQQVVIQNINELVKE 225 + A+ M+E+ E Q +++++ G + +V+ + +EL K Sbjct: 192 VENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDELKKI 251 Query: 226 AGKPRWDWQ--PEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA 283 A K ++Q PE +E L AR+ +A L +A I +K R ++ IK E + +LA Sbjct: 252 AAKETKEFQLFPEYTDE-LYARIDEIAHKDLDEALSIAEKLPRQDRIHEIK-EHVREVLA 309 Query: 284 E-----DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTH 338 + D+ + ELG +++ +VR R+L + RIDGR IR L ++PR H Sbjct: 310 DEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRVH 369 Query: 339 GSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKR 398 GSALF RGETQ L TL + Q +D L G ++ ++ +Y PPYS GETG VGSPKR Sbjct: 370 GSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPKR 429 Query: 399 REIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIK 458 REIGHG LA++ ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L+ AGVP+K Sbjct: 430 REIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPLK 489 Query: 459 AAVAGIAMGLVK---EGDN-YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 514 A VAGIAMGLV +G + + L+DILG ED GDMDFKVAG+ + I+ALQ+D K++GI Sbjct: 490 APVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDGI 549 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 +I+ AL QAK AR IL V+ + I+ P ++SEFAPRI T + +KI +VIG G Sbjct: 550 PADILAAALQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKGK 608 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTRI 632 +I + E+TG I IEDDGTV I++ GE AK A I+ I E G Y GKV + Sbjct: 609 MINQIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVKT 668 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD----KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS 688 FGAFV + G +GL+HISQI + +R++ V D L+ G V V V VD +G+I L+ Sbjct: 669 TSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISLA 728 Query: 689 IKEATEQSQPA 699 I +Q A Sbjct: 729 IPGFEDQENNA 739 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 310/705 (43%), Positives = 438/705 (62%), Gaps = 36/705 (5%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK---AKPGQDF--FPLTVNY 63 ++ ++ ++TG +ARQA A VS T V V QK +K D L N+ Sbjct: 9 MEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLSGLALVTNF 68 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV-NP 122 ++YA GRIP FF+REG+ SE E L +R++DR +RPL E VNEV ++ +++ N Sbjct: 69 LAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVCKLLAHGNR 128 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK--LDLVVA 180 +V P+I A+I ASAAL LSGIPF+GP+ +G D T +E++E++ L+L VA Sbjct: 129 KVLPEIPALIAASAALQLSGIPFSGPV----IGVDVDMRGSEVTCNEIRETEGGLELFVA 184 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG--KP---RWDWQP 235 TE +V+MVE+EA SE++++ A+ + + V INE VK KP +D Sbjct: 185 CTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVKPIGVLYD--- 241 Query: 236 EPVNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDENEL 293 N+ L +V A +L Y RI+ K++R+ ++ I ++T A L D+ E+E+ Sbjct: 242 ---NKELCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQL--SDDGYAESEV 296 Query: 294 GEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353 + +EK +VR VL R DGR IR + + LP THGSALFTRG TQ+LV Sbjct: 297 LFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQSLVV 356 Query: 354 ATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413 ATLG+ +D QV+D++ GER ++ L HYNF PY+VGE G + +P RREIGHGRLA + V A Sbjct: 357 ATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKAVKA 416 Query: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473 V+P + FPYT+R+VSEITES+GSSSMA+VCG+SLALMD GVPI VAGIAMGL+ +G Sbjct: 417 VLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLITDGV 476 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 VLSDI GDED LGDMDFKVAG+R+GI ALQMD+K+ GI+ ++ ALNQA RLHI Sbjct: 477 RSAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDALNQALAGRLHI 536 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 593 L ME I PR + + AP+I KI+ D + VIG GG IR ++ +T I+I+ + Sbjct: 537 LEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDIDQNN 596 Query: 594 TVKIAATDGEKAKHAIRRIEEITA-------EIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 V I A E A R++ + ++++G +Y GK+ +VDFG FV + +E Sbjct: 597 YVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFGLFVVLPNKQE 656 Query: 647 GLVHISQIADKRVEKV-TDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 GLVHIS+I+ RV + DY + GQ V V++ ++ G+I+L+++ Sbjct: 657 GLVHISEISKNRVNDIRADYTE-GQAVTVRIKDIGSDGKIKLTMR 700 >UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 Tax=cellular organisms RepID=PNP_GRAFK Length = 750 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 295/681 (43%), Positives = 424/681 (62%), Gaps = 16/681 (2%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +++ETG +A+QA +V+V + TVV + K F PLTV+Y+E+ AAGR PG Sbjct: 18 ISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQK-DLPFLPLTVDYREKFAAAGRYPG 76 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 FF+RE RPS+GE L RL+DR +RPLFP+ + E QV+ ++S + +V P+ +A + AS Sbjct: 77 GFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLMSHDDEVMPEAMAGLAAS 136 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AA+ LS PF I ARVG +N ++++NPT+ +L ES +++++ + +V+MVE E Sbjct: 137 AAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMMIGASADSVMMVEGEMDE 196 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR-WDWQPEPVNEALNARVAALAEARL 254 +SE+ M+ A+ F HE +V I+ + L G+ +++ P NE L +V +A ++ Sbjct: 197 ISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAPENEDLVKKVHDMAYDKV 256 Query: 255 SDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLDENEL-GEILHAIEKNVVRSRVLAG 312 + + K+ER IK E A+ +E+E + +L + EK VR L Sbjct: 257 YAVAKAGSSKKERTDAFASIKEEVKAS-FSEEELEEYGDLVSDYYRKAEKAAVRDLTLNE 315 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R+DGR+ D +R + LP HGS++FTRGETQAL T TLGT+RDA +D E Sbjct: 316 GIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSHEG 375 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 + F HYNFPP+ GE + RRE+GHG LA+R + ++P ++ PYTVRVVSE+ Sbjct: 376 EERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIP--EECPYTVRVVSEVL 433 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN--YVVLSDILGDEDHLGD 490 ESNGSSSMA+VC ++ALMDAGV +K V+GIAMGL+ +GD+ Y VLSDILGDEDHLGD Sbjct: 434 ESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGKYAVLSDILGDEDHLGD 493 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 MDFKV G+ DGI+A QMDIK++G++ EI+ AL QA+ RLHIL + I P D+ Sbjct: 494 MDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAQPNADVKA 553 Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-----GTVKIAATDGEKA 605 +AP++ T +I + I +IG GG VI+ L +ETGTTI I +D G ++I T+ E Sbjct: 554 YAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILGTEQEGI 613 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEKVT 663 I +IE IT + E G VY KV +++DFGA V G E L+HIS++A +R V Sbjct: 614 DKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEVLLHISELAWERTNDVN 673 Query: 664 DYLQMGQEVPVKVLEVDRQGR 684 D L++G + VK +D + R Sbjct: 674 DVLKLGDVLDVKYFGLDPKTR 694 >UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms RepID=A4RTW2_OSTLU Length = 823 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 311/714 (43%), Positives = 427/714 (59%), Gaps = 32/714 (4%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 + G+ V LETG + QA AV S +T ++ T ++ F PLTVNY ER Sbjct: 73 LRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFS 132 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAGR G + +R+G E ETL ARL+DRPIRP+ +G+ E QV+ ++S + + + D Sbjct: 133 AAGRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDA 192 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVVAGTEAAV 186 +A+ ASAAL++S IP P+ RVG + +D+ V+NPT +++K+S+LDLV+AGT+ AV Sbjct: 193 LAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAV 252 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDW----QPEPVNEAL 242 LM+E L+ D+ML A+ G E + I+ + QPE V+EA Sbjct: 253 LMIEGFCDFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPEGVDEA- 311 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHA--- 299 VAAL E L A + KQER A + + + L DE + +++A Sbjct: 312 ---VAALVEDELKQAIVVPIKQERGAMIGAARERAVEALQ------DEFQASAVINACGK 362 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 IE +R + R DGR MIR + G+LPRTHGS+LFTRGETQA+ ATLG + Sbjct: 363 IESRALRDVIRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGS 422 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 +DAQ D++ F+ HY FPP SVGETG G RREIGHG LA+R ++ ++P + Sbjct: 423 QDAQRQDDVEAGEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEE 482 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV------KEGD 473 FP+ ++ S ITESNGSSSMA+VC +LAL+DAGVPIK VAGIAMGL+ GD Sbjct: 483 DFPFVCKLESTITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGD 542 Query: 474 NY--VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +VL+DILG ED LGDMDFKVAG +DGI+A QMDIK+EGIT ++M+ AL +A+ + Sbjct: 543 ELEPIVLTDILGSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLV 602 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIE 590 HILG ME+ AP G S++APRI +I + VIGKGG IR++ E+TG I++ Sbjct: 603 HILGEMEKCDPAPAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAENIDVN 662 Query: 591 DDGTVKIAATDGEKA--KHAIRRIEEITAEIEVGRVYTGKVT-RIVDFGAFVAIGGGKEG 647 + + + T G A AIR IE + E EVG++Y G V ++V+FG FV G EG Sbjct: 663 KEKEM-VFVTGGADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEG 721 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 LVHIS++ RV V+D G + VK++ VD +G+ LS KE + P A Sbjct: 722 LVHISELDVSRVPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEVLLEENPELA 775 >UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 Tax=Actinobacteria (class) RepID=PNP_ACIC1 Length = 782 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 317/715 (44%), Positives = 439/715 (61%), Gaps = 38/715 (5%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 ++ +G TV ETG +ARQA + + + DT V K+ + DFFPLTV+ + Sbjct: 12 VIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVDVE 71 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 ER YAAGRIPGSFFRREGRPSE L RLIDRP+RP F +G NEVQV+ TV++V+P+ Sbjct: 72 ERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDPEH 131 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT-- 182 D+VA+ AS + L+G+PF+GPIG R+ +I+ +V PT EL+ + D+VVAG Sbjct: 132 LYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDMVVAGRVL 191 Query: 183 ---EAAVLMVESEAQ-----LLSEDQMLGA---VVFGHEQQQVVIQNI----NELVKEAG 227 + A++MVE+EA L+ E V G E + I+ + +EL A Sbjct: 192 PDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQSELAARAA 251 Query: 228 KPRWDWQPEPV-----NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL 282 KP ++ P+ ++ +A VAA ++ A I KQER A +D + + + L Sbjct: 252 KPVTEF---PLFRDYEDDVYDA-VAATVRDDVARALTIAGKQEREAALDEVANTALGRL- 306 Query: 283 AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSAL 342 E E E+ L A+ K +VR R++ + RIDGR IR L G++PR HGSAL Sbjct: 307 GERFAGREKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRVHGSAL 366 Query: 343 FTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIG 402 F RGETQ L TL R Q LD + ++ HYNFPPYS GE G VGSPKRREIG Sbjct: 367 FERGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPKRREIG 426 Query: 403 HGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVA 462 HG LA+R ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L++AGVP++A VA Sbjct: 427 HGALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLRAPVA 486 Query: 463 GIAMGLVKEG----DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEI 518 GIAMGL+ + +YV L+DILG ED GDMDFKVAG+RD ++ALQ+D K++GI + Sbjct: 487 GIAMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASV 546 Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRA 578 + AL QA+ ARL IL VM +AI+ P +S +APRI TIKI D+I VIG G +I Sbjct: 547 LAAALPQAREARLTILDVMAKAISEP-APMSPYAPRIITIKIPVDQIGAVIGPKGKIINQ 605 Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTRIVDFG 636 + ++TG I IEDDGT+ I AT+G A+ A I I EVG Y G V + FG Sbjct: 606 IQDDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVKATPFG 665 Query: 637 AFVAIGGGKEGLVHISQI----ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 FV++ GK+GL+HIS++ +RVE V D L++G ++ V++ ++D +G++ L Sbjct: 666 VFVSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720 >UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=bacterium Ellin514 RepID=B9XS52_9BACT Length = 664 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 274/601 (45%), Positives = 384/601 (63%), Gaps = 10/601 (1%) Query: 101 PLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 160 PLFP+G+ NEVQV V+S + + +PDI+++IGASA+L +S IP+ GP+GA R+ +N + Sbjct: 1 PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60 Query: 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 ++ PT E+ ES LDL+ G E ++M E + +SE+ A+ FG + + +I Sbjct: 61 FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120 Query: 221 ELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAT 280 EL +AGK + + + V E + ALA R+ A K R A V+ I E Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180 Query: 281 LLAE--DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTH 338 L+ + E + E L + + I+K VR ++ R+DGR D IR + G+LPR H Sbjct: 181 LVEKFGAEKVTEFVLKDASYYIQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPRAH 240 Query: 339 GSALFTRGETQALVTATLGTARDAQVLDELMGERTDT-FLFHYNFPPYSVGETGMVGSPK 397 GSALF+RGETQ + ATLGT DAQ D G + F+ HYNFP YSVGETG + P Sbjct: 241 GSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISGPG 300 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RREIGHG LA+R + ++P +DK+PY +RV SEI ESNGS+SMASVCG +LALMDAGVP+ Sbjct: 301 RREIGHGALAERSIEPMIP-LDKYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGVPM 359 Query: 458 KAAVAGIAMGLVKEGDN------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI 511 VAGI++G+ E D Y +LSDI+G ED GDMD K+AG+ GI+ Q+D+K+ Sbjct: 360 IRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDLKL 419 Query: 512 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK 571 GI ++M L +A+ ARL ILG M + + APR ++S++APRI T++INP+KI +IG Sbjct: 420 RGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALIGP 479 Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 GG I+ L EE+G I IEDDGTV I + E K A I +TAE E+G++Y GKV Sbjct: 480 GGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKVVT 539 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 + +FGAFV GK+GLVHIS++A+ RV++ D +++G E+ VK L VD +GR++LS + Sbjct: 540 VKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSRRA 599 Query: 692 A 692 A Sbjct: 600 A 600 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 299/707 (42%), Positives = 415/707 (58%), Gaps = 28/707 (3%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + LETG + RQA A+M + +T ++ T F PLTVNY ER AAG Sbjct: 93 GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAG 152 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 R G F +R+GRP + E L++RL+DRPIRP+F +G+ N+ Q++ V+S + +P+ +A+ Sbjct: 153 RTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAI 212 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQ-YVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 A+AAL +S IP + RVG D +++NPT +E++ S+LDL+VAGT AVLM+E Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIE 272 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 L+E+QM+ A+ G E + + K+ GKP+ V E L +R+ L Sbjct: 273 GFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKRTDAVVTVPEELESRLMELV 332 Query: 251 EARLSDAYRITDKQERYAQVDVIK-----------------SETIATLLAED--ETLDEN 291 L+ AY+ + +E SET+ + Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392 Query: 292 ELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 351 ++ L A+E V+R VL + R DGR IR + R G+LPRTHGSALFTRGETQ++ Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452 Query: 352 VTATLGTARDAQVLDELM---GERTDT--FLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 ATLG+A DA D + GE ++ F Y+FPP SVGETG G+P RRE+GHG L Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 A+R + ++PD +FPYTVRV S ITESNGSSSMASVCG LA+MDAGVPI VAGIAM Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572 Query: 467 GLVKEGDNY-VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 GL+ E + VLSDILG ED LGDMDFKVAG D I+A QMDIK+EGIT +IM AL Q Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETG- 584 AK R HIL M + P +S APR+ ++I+PDK VIG GG VI+ + + +G Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692 Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK-VTRIVDFGAFVAIGG 643 T I+I++ G V + A + A AI ++ + ++ E G ++ K V + FG FV + Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 G++GLVH+S++ D V +++G + V V+ V G++ LS K Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRK 799 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/702 (42%), Positives = 416/702 (59%), Gaps = 26/702 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 + +ETG + RQA AV ++ D+ ++ T K K DF PL+V+YQER +AG G Sbjct: 90 ICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTSG 149 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 + +R+GRP+E E L RLIDRP+RPL G+ +E Q+++ V+S + + + D +A+I ++ Sbjct: 150 GYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIASA 209 Query: 136 AALSLSGIPFNGPIGAARVGYIND-QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ 194 ++L +S +P + P+ A +VG +D V+NPT +++ SKL+L+VAGTE AVLM+E A Sbjct: 210 SSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAAD 269 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARL 254 L E M+ AV GHE QV+ Q + L K AGK + + E L RV L R+ Sbjct: 270 FLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDRI 329 Query: 255 SDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEP 314 D + +E ++ + L ED E I A + + R Sbjct: 330 DDMWSSGLGKEAQGKIMTDLYTAVVGELIEDYP---GETVAIKGAFKDLLCRRMFFRARE 386 Query: 315 ---RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R DGR IR L + TG+LPR HGSALFTRGETQ + T TLG + Q +++L G Sbjct: 387 EGLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGT 446 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 F Y FPP VGETG VG+P RRE+GHG LA+R ++ +P + FPYT+RV S I Sbjct: 447 DEKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVESLI 506 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV---KEG---DNYVVLSDILGDE 485 TES+GSSSMASVCG SLALMDAGVPIKA VAGIAMG++ K G +N V+LSDILG E Sbjct: 507 TESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSDILGTE 566 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 D LG MDFKVAG R GIS Q+DIK EG+T E M+ AL QA+ RLH+L ME+ I +PR Sbjct: 567 DALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKVIASPR 626 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEK 604 ++ P++ + I + I +IG GG IRA+ E+ +++ ++G V++++ D K Sbjct: 627 EELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDFELVNMDVGEEGGVQLSSFDTAK 686 Query: 605 AKHAIRRIEEITAEIEV-GRVYTGKVTRIVDFGAFVAIGGGK--------EGLVHISQIA 655 A I + V G YTGK+T I FG F+ I G EGLVH+S++A Sbjct: 687 MGEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLVHVSELA 746 Query: 656 DKRVEKVTDYLQMG--QEVPVKVLEVDRQGRIRLSIKEATEQ 695 +RV +++ +E+ VK L D+ G+++LS K E+ Sbjct: 747 HERVRNCEGFMKSMNVEELTVKYLGKDK-GKLQLSRKALLEE 787 >UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Tax=Campylobacter RepID=PNP_CAMHC Length = 711 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 286/716 (39%), Positives = 412/716 (57%), Gaps = 60/716 (8%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSF 77 E +A+QA A ++ + +T V TV ++ + +DF PLTV Y E+ YAAGRIPG + Sbjct: 14 FEINKVAKQAAGACLMKVKNTVVLATV-ARENTQVEEDFLPLTVQYIEKQYAAGRIPGGY 72 Query: 78 FRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 +RE +P + ETL +R+IDR +RPLFP+G+ Q++ V+S +P+++ +V + AS A Sbjct: 73 IKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEIDLQVVGLNAASVA 132 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA---- 193 L LS IP P+ RVGYIND +V+NPT EL+ S LDL VAG + +LM+E + Sbjct: 133 LYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEMLMIEMRSLPNM 192 Query: 194 -------QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--WDWQPEPVNEALNA 244 SED+M+ A+ F + KP +++PE +E + Sbjct: 193 NGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAALEYKPEVEDENIAN 252 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 + + + A K ER ++D I ++ + + A +N + I+ ++ + Sbjct: 253 FIEQNFTSDVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQKNVVSNIIGKFKRKI 312 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 +RS+++ R DGR D IR + + T +LP HGS LFTRG+TQALV TLG DAQV Sbjct: 313 IRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTTLGGETDAQV 372 Query: 365 LDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 D L ++ F+F YNFP + VGE + SP RRE+GHG LAKR + +P + P Sbjct: 373 SDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAKRALTPSVPLNN--P 430 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 +R VSEI ESNGSSSMASVCG SL+L AGV VAG+AMGL+ E D + +L+DI+ Sbjct: 431 QVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDDKHAILTDIM 490 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDH GDMDFKVAG+R+GI+ALQMDIK+ GI+ EI++ ALNQAK R +IL +ME A Sbjct: 491 GLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKDGRNYILNLMEVA-- 548 Query: 543 APRGDI---SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-DDGTVKI- 597 DI E P+I ++P+K+ D+IG+GG I+ L ++ +I++E D G VKI Sbjct: 549 --NDDIIINEEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSIDLERDSGEVKIQ 606 Query: 598 ---------AATD-------------GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 A +D G K H R E T+ +VG + G V +I+DF Sbjct: 607 GANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKE--TSNFQVGEEFDGVVKKIMDF 664 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 GAF+++ G +GL+H+S+I + L G + VKV E+ R G+I L + E Sbjct: 665 GAFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEIKR-GKISLELCE 711 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 292/738 (39%), Positives = 423/738 (57%), Gaps = 80/738 (10%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSF 77 + +A+QA AVM+ + +T V TV + + +DF PLTV Y E+ YAAGRIPG + Sbjct: 14 FDLNKVAKQAAGAVMLRVKNTVVLATV-ARDDVQVEEDFLPLTVQYIEKAYAAGRIPGGY 72 Query: 78 FRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 +RE +P + ETL AR+IDR +RPLFP+G+ Q++ V+S +P+V+ +V + AS A Sbjct: 73 VKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDLQVVGLNAASVA 132 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE------S 191 L LS IP N P+ RVGYI+D++V+NP+ ELK S LDL VAGT+ +LM+E Sbjct: 133 LYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDELLMIEMRSIAQQ 192 Query: 192 EAQLL--------------------------SEDQMLGAVVFGHEQQQVVIQNINELVKE 225 +Q++ SED+++ A+ F + E KE Sbjct: 193 SSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILRASNAYEEAFKE 252 Query: 226 AGKPR--WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA 283 K + +PE NE + + + + +A K ER +++ I + + +A Sbjct: 253 HKKEDAILELKPEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGKIAKQIASDEVA 312 Query: 284 EDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALF 343 + E +E + +L +K +VR +++ R DGR D +R + + T VLP HGS LF Sbjct: 313 QKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETNVLPNAHGSCLF 372 Query: 344 TRGETQALVTATLGTARDAQVLDELMGERT---DTFLFHYNFPPYSVGETGMVGSPKRRE 400 TRG+TQALV ATLGT DAQ+ D ++ E+T + F+F+YNFP +SVGE + +P RRE Sbjct: 373 TRGQTQALVVATLGTDGDAQMYD-ILTEKTALIEKFMFNYNFPGFSVGEASPLKAPGRRE 431 Query: 401 IGHGRLAKRGVLAVMPDMD-KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKA 459 +GHG LAKR A+ P +D PYT+R+VSEI ESNGSSSMASVCG +LAL AGV + Sbjct: 432 LGHGNLAKR---ALAPSIDINSPYTIRLVSEILESNGSSSMASVCGGALALRAAGVDTQK 488 Query: 460 AVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIM 519 VAG+AMGL+ EGD + VL+DI+G EDH GDMDFKVAGS DGI+ALQMDIK+ GI+ E++ Sbjct: 489 LVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIKLGGISLEVL 548 Query: 520 QVALNQAKGARLHILGVMEQAINAPRGDISE-FAPRIHTIKINPDKIKDVIGKGGSVIRA 578 + AL QAK R HIL +M QA + +++E P++ ++P KI D+IG+ G I+ Sbjct: 549 KEALYQAKRGREHILNLMHQA--DSKIEVNEDVLPKLELFSVDPSKIVDIIGQAGKTIKE 606 Query: 579 LTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAE------------------- 618 + E +I+++ + G VKIA + A I IT++ Sbjct: 607 IIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPHGHDRRDKD 666 Query: 619 -----IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 +G + G V +VDFGAF+ + G +GL+HIS K+ L +G + Sbjct: 667 RQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHIS--------KIKTPLNVGDRLK 718 Query: 674 VKVLEVDRQGRIRLSIKE 691 V V E + +I LS+ E Sbjct: 719 VCVSE-QKGNKISLSLVE 735 >UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B019_SULD5 Length = 746 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 292/734 (39%), Positives = 429/734 (58%), Gaps = 88/734 (11%) Query: 19 ETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFF 78 + G +A+QA A ++ + +T + TV + + ++F PLTV Y E++YA G+IPG + Sbjct: 15 DIGKVAKQAAGAALLKIKNTVILATV-ARDDTQVSENFVPLTVQYVEKSYAVGKIPGGYI 73 Query: 79 RREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 138 +RE +P + ETL +R+IDR +RPLFP+G+ Q+ V+S + +V+ + A+ A AAL Sbjct: 74 KRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDLQVAALNAAGAAL 133 Query: 139 SLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE--SEAQL- 195 LS IP N + R+GY++ YV+NP+ LK+S LDL VAGT+ +LM+E S A + Sbjct: 134 YLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKEELLMIEMRSIASME 193 Query: 196 ----------------LSEDQMLGAVV--FGHEQQQVVIQNINELVKEAGKPR------- 230 L+E+ M V+ F + I + EA Sbjct: 194 SVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAITEATTAYENTFVSL 253 Query: 231 ------WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQ----VDVIKSETIAT 280 D++ + ++A+ A + + + DA K ER ++ VD I + IAT Sbjct: 254 KKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASELSKIVDAILKDNIAT 313 Query: 281 LLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGS 340 L D+ L + +L +K +VR ++ R DGR+ IR + + T +LP HGS Sbjct: 314 LEGWDKAL----VDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIETNLLPLAHGS 369 Query: 341 ALFTRGETQALVTATLGTARDAQVLDELMGERT---DTFLFHYNFPPYSVGETGMVGSPK 397 LFTRG+TQALV ATLG +DAQ+ D L+ E++ DTF+ +YNFP +SVGE + +P Sbjct: 370 CLFTRGQTQALVIATLGNDKDAQMYD-LLTEKSSVSDTFMVNYNFPGFSVGEASPLRAPG 428 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RRE+GHG LA+R + V+ D+++ T+R+VSEI ESNGSSSMA++CG +LAL AGV I Sbjct: 429 RRELGHGNLARRALEPVV-DINRLQ-TIRLVSEILESNGSSSMATICGGALALKAAGVEI 486 Query: 458 KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE 517 + VAGIAMGLV EGD + VLSDI+G EDH GDMDFKVAG++DGI+ALQMDIK+ GI+++ Sbjct: 487 EKLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGISRD 546 Query: 518 IMQVALNQAKGARLHILGVMEQA-----INAPRGDISEFAPRIHTIKINPDKIKDVIGKG 572 +++ AL QA+ R HIL +ME+A IN + P++ ++P KI D+IG+ Sbjct: 547 VLKEALYQAREGREHILAIMEKASEEIVIN------NAVLPKLELFNVDPSKIVDIIGQA 600 Query: 573 GSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAEIEV---------- 621 G IR + E+ +I+++ + G VKIA + EK A I +IT + Sbjct: 601 GKTIREIIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGHGRDR 660 Query: 622 -----------------GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 V G V RIVDFGAFV + GG +GL+H+S+IAD RV+KV+D Sbjct: 661 DNKYPTKESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVDKVSD 720 Query: 665 YLQMGQEVPVKVLE 678 YL + Q+V VK+L+ Sbjct: 721 YLALEQKVRVKILK 734 >UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=2 Tax=Diptera RepID=B0WG77_CULQU Length = 759 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 264/678 (38%), Positives = 404/678 (59%), Gaps = 29/678 (4%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD--FFPLTVNYQERTYAAGRI 73 V + +G AR A +V++ DTAV VT V ++K G + F PL V+Y+++ AAGRI Sbjct: 54 VRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAAGRI 113 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 P +F RRE PSE E L ARL+DR +RPLFP F + Q++ +++++ PD+ A+ Sbjct: 114 PTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQAINA 173 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT-EAAVLMVESE 192 ASAALSLS IP+NGP+GA RVG ++++ ++NPT+ EL+ S LDLVV+ T + V+M+E Sbjct: 174 ASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVMLEGR 233 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP-VNEALNARVAALAE 251 +++E+++ A+ G ++ Q++I I +L K GKP+ +P P +E + A V ++E Sbjct: 234 GNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRTMSE 293 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 RL + +R DK R V +++TI + + ++D +GE + K+V R V Sbjct: 294 MRLREIFRDFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSVFREMV 353 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL- 368 R DGR D +R + + HGSALF RG+TQ T L + A LD + Sbjct: 354 FEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLDPIT 413 Query: 369 ---MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 MG ++ F HY FPPY+ GETG +G RREIGHG LA++G+L ++P+ + P+T+ Sbjct: 414 SLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN--PFTI 471 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN--------YVV 477 R+ +E+ ESNGSSSMA+VC S+ALMDAG+P++ A AG+A+GL+ + +N Y + Sbjct: 472 RLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHLQDYRI 531 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+D+LG ED+LGDMD KVAG+R G++A+Q DIK+ GI +++ +L +A AR IL +M Sbjct: 532 LTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFKILDLM 591 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 ++I+ R + P ++I P + ++G GG IR L ETG + ED+ +I Sbjct: 592 NESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDENQFRI 651 Query: 598 AATDGEKAKHAIRRIE-----EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GLVHI 651 A A +E E ++E G +YT K+ + D G V + L+H Sbjct: 652 FAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSPALLHN 711 Query: 652 SQIADKRVEKVTDYLQMG 669 SQ+ D+R KV++ L G Sbjct: 712 SQL-DQR--KVSEILMFG 726 >UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4RT74_OSTLU Length = 679 Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust. Identities = 266/658 (40%), Positives = 383/658 (58%), Gaps = 21/658 (3%) Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y+ER+YA G+IP +F RREG P E E L R+IDR RPLF + F EV + V++ Sbjct: 2 VDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMAS 61 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + +P ++A+ GASAAL+ S IP+NGPIGA RV +N +++P+ + ++ S L A Sbjct: 62 DGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFYA 121 Query: 181 GTEAAVLMVESEAQL---LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 237 G EA LM+E+++ L E + A+ HE + +I L E GKP+ + P Sbjct: 122 GNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIPPQIALANEIGKPKQELAAAP 181 Query: 238 VNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLL------AEDETLD 289 V + +A+ARL Y I DK ER ++ ++SE + L+ E + Sbjct: 182 VTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELMDSHPEWMESGEVS 241 Query: 290 ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQ 349 E LG A+ V+R RVL R+DGR +R LD TG +P HGSALF RG TQ Sbjct: 242 EAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQ 301 Query: 350 ALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKR 409 AL T TLG+ D+Q LD L G + + HY+FP +SV ETG G RRE+GHG LA++ Sbjct: 302 ALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARGL-SRREVGHGALAEK 360 Query: 410 GVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 +L V PD D FP+ VRV +E ESNGSSSMA+VC S+ALMDAGVP+ V I++GLV Sbjct: 361 SLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGLV 420 Query: 470 KEGD-------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 522 + D Y ++ DI+G ED LGDMDFK+AG+R G++ +Q+D K GI +I+ A Sbjct: 421 MDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDCKPAGIPLDILIEA 480 Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 582 L++A AR ++ VME+A++ P+ + + APR + P I +IG GS I+AL +E Sbjct: 481 LDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEKE 540 Query: 583 TGTTIE-IEDDGTVKIAATDGEKAKHAIRRIEEITAEI-EVGRVYTGKVTRIVDFGAFVA 640 TG + + DDG + + + AI IE + I EVG+ Y V ++ FG + Sbjct: 541 TGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVLT 600 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 G +GL+H+S+IA + E V+D +G +V VK ++ D +G I+ S K + +P Sbjct: 601 TASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLPRPRP 658 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 249/685 (36%), Positives = 402/685 (58%), Gaps = 24/685 (3%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 +++ETG +A QA +V M T++ T+V KK K G +F PL ++Y+E A G+I Sbjct: 16 QIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLPLIIDYKENYSAGGKI 75 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 PG F +RE RPS+ E L RLIDR +RPLFP+ F+ E+Q+I ++S + V PD +A + Sbjct: 76 PGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLLSYDRNVLPDGLAGLV 135 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 ASAA+S+SGIPF GP+ A R+ + +++NP +K+S ++L++ GT+ ++LM+E E Sbjct: 136 ASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLIIGGTKNSILMIEGEM 195 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN-----ARVAA 248 + +SE++++ + H ++ I L+K R + PV LN ++ Sbjct: 196 KEISENEIIYFIKIAHFFIKLQITAQINLIKNLKIKRNNL---PVFNNLNFIYLKNKIKY 252 Query: 249 LAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSR 308 + ++ Y+ R+ Q++++ + L ++ L+E+E I ++K ++R Sbjct: 253 IFYEKIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNYIFEILKKEILREI 312 Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 +L R+DGR D +R + +T LP HGSA+F+RGETQAL T TLG++ D +D + Sbjct: 313 ILKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVTLGSSLDVNKIDNV 372 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 428 + + F HYNFPP+S GE ++ RREIGHG LA+R + ++P K PYT+RVV Sbjct: 373 ILQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNIIP--FKTPYTIRVV 430 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GDNYVVLSDILGDED 486 S+I ESNGSSSMA+VC ++LALMDAG+PIK V+GI+MGL+ D ++LSDILGDED Sbjct: 431 SDILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTDEAIILSDILGDED 490 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 ++GDMDFK+ G++ GI+A QMDI G E++ ++ +AK L ++ + I PR Sbjct: 491 NIGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFLIKKILNTIQYPRF 550 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD---GTVKIAATDGE 603 E +P+I +I I VIG GG +I+ + T T ++IE++ G ++I + Sbjct: 551 SFKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEENLGIIEIYGKTDK 610 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKV 662 + K+AI +I+ + + ++Y K+ I + + + G Q D K+ E + Sbjct: 611 QIKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSG--------QTMDLKKSENL 662 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRL 687 Y + + +K+ V++ G+I Sbjct: 663 NLYSFLRKGDWIKIKSVNQNGKINF 687 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 263/707 (37%), Positives = 415/707 (58%), Gaps = 41/707 (5%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +++ETG +AR+A + +V M +T++ TVV K++K F PLT++Y+E+ A G+IPG Sbjct: 18 LSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIPLTIDYREKYSAGGKIPG 77 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 + +REGRP + E L RL+DR +RPLF + + NE+Q++ +++S + V PD +A + AS Sbjct: 78 GYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLLSYDINVLPDGLAGLVAS 137 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKL--------DLVVAGTEAAVL 187 A+S+S I F GP+ R+ IND +++NP +E+K+S DL+V GT ++ Sbjct: 138 TAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSDFYLDLDLDLDLIVGGTNNYII 197 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR---------WDWQPEPV 238 +VE E + +SE +M+ A+V H+ Q+ I+ L+ + K +++ + + Sbjct: 198 LVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFIKKKLYKIELYNYYYKYI 257 Query: 239 NEALNA-----RVAALAEARLSDAYR-ITDKQERYAQVDVIKSETIATLLAEDETLDENE 292 N LN ++ ++ + Y+ KQ+R ++ I + E ++ E Sbjct: 258 NFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQKRSNKIYNILKKIKFHFYNESIVINNLE 317 Query: 293 LGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALV 352 + I I+K ++++ + R+DGR D IR + + LP HGSA+FTRGETQAL Sbjct: 318 IDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLPGVHGSAIFTRGETQALS 377 Query: 353 TATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL 412 T TLG++ D +D + F HYNFPP+S GE ++ RREIGHG LA+R + Sbjct: 378 TVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKGVSRREIGHGNLAQRALK 437 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG 472 ++P YT+RVVS++ ESNGSSSMA+VC ++LALMD+G+ +K V+GI+MGL+ Sbjct: 438 NIIPT----TYTIRVVSDVLESNGSSSMATVCASTLALMDSGIIVKRPVSGISMGLIM-- 491 Query: 473 DNY-----VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 NY ++LSD+LGDED++GDMDFK+ G+ G++A QMDIKI GIT +++ + +AK Sbjct: 492 -NYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISGITYDVLSYTIFKAK 550 Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTI 587 L I+ M ++ PR ++ A +I+T I I VIG GG I+ + T T I Sbjct: 551 KGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGGKRIQEIQVSTETNI 610 Query: 588 EIEDD---GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 +I++ G ++I + K K AI +I+ IT +VG +Y KV I FG FV I Sbjct: 611 KIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVKNIKKFGVFVKISKY 670 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIK 690 EGL+HI +I+ + KV +++ G + VK L + + R I+LS K Sbjct: 671 LEGLLHIYEIS--WLTKVESFIRKGDIISVKYLGKNNKFRKIKLSHK 715 >UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 Tax=Epsilonproteobacteria RepID=PNP_SULDN Length = 721 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 282/712 (39%), Positives = 411/712 (57%), Gaps = 53/712 (7%) Query: 21 GMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRR 80 G +A+QA A + +T + TVV + DF PLTV Y E+ YAAG+IPG FF+R Sbjct: 19 GEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYIEKAYAAGKIPGGFFKR 78 Query: 81 EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 E + S+ ETL +R++DR +RPLFP+GF + Q+ V SV+ + + ++A+ ASAAL + Sbjct: 79 ETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQVLALNAASAALYV 138 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ------ 194 S I N + A RV I+ + +LNPT EL +S LDL ++GT+ +LM+E ++ Sbjct: 139 SDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKEDLLMIEMRSKGGIKVD 198 Query: 195 ------LLSEDQMLGAVVFGH------EQQQVVI------------QNINELVKEAGKPR 230 L + + A++ H E + + I E+ KE K Sbjct: 199 TNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKAEELLFETNAMYEEMFKEFKKET 258 Query: 231 --WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETL 288 + + +NE + V + + + A K ER + ++ + I T E Sbjct: 259 SPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERSTALRQLRKKIIIT----KEEW 314 Query: 289 DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGET 348 DE EL +++ +++K VR ++L R DGR + IR + + T VLP H S LFTRG+T Sbjct: 315 DEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISISTNVLPSAHASCLFTRGQT 374 Query: 349 QALVTATLGTARDAQVLDELM--GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 QALV T+G +DAQ+ + L G + + F+ HYNFP +SVGE + KRRE+GHG L Sbjct: 375 QALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGEASPIMGTKRRELGHGNL 434 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 AKR A+ P ++ TVR+VSEI ESNGSSSMA+VCG +AL A + +AGIAM Sbjct: 435 AKR---ALEPIVNLEGQTVRLVSEILESNGSSSMATVCGGYMALRAADIETSDTIAGIAM 491 Query: 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 G+V EGD Y +LSDI+G EDH GD+DFKV GS+DGI+A+QMDIK+ GI+ I++ AL QA Sbjct: 492 GMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDIKLGGISLNILKEALYQA 551 Query: 527 KGARLHILGVMEQA-INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 585 K R HI+ +M++A N D P INP I D+IG+ G IR + E+ Sbjct: 552 KEGRAHIINIMQEAEKNISFND--GVLPSTDFFHINPSFIGDIIGQAGKTIREIIEKFEV 609 Query: 586 TIEIE-DDGTVKIAATDGEKAKHAIRRIEEITA-------EIEVGRVYTGKVTRIVDFGA 637 I+I+ DG VK+ + A IE I + E +VG ++ G V +IV+FGA Sbjct: 610 AIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYKVGDIHKGIVKKIVEFGA 669 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 F+ + G +GL+HIS+I+D+RVEKV+D L+ G+E+ V++LE + +I L I Sbjct: 670 FIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF-KGNKISLGI 720 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 281/705 (39%), Positives = 404/705 (57%), Gaps = 32/705 (4%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ AAG Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAG 110 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ PD++A+ Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT-EAAVLMVE 190 GAS ALSLS IP+NGP+GA R+G I+ +YV+NPT+ E+ S L+LVVAG ++ ++M+E Sbjct: 171 NGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLE 230 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG----KPRWDWQPEPVNEALNARV 246 + A+ + + A+ G + Q +IQ I +LVKE G P+ + P P + Sbjct: 231 ASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSP---EIVKYT 287 Query: 247 AALAEARLSDAYRIT--DKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 LA RL + DK R V+ I+ +T L + D E+ E + + K V Sbjct: 288 HKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEV 347 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA----R 360 RS VL R DGR+ +R + + HGSALF RG+TQ L T T + + Sbjct: 348 FRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIK 407 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 QV+ + G + F+ HY FPPY+ E G V RRE+GHG LA++ + V+P Sbjct: 408 SDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RD 465 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------- 473 FP+T+RV SE+ ESNGSSSMAS CG SLALMD+GVPI +AVAG+A+GLV + D Sbjct: 466 FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIE 525 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 +Y +L+DILG ED+ GDMDFK+AG+ GI+ALQ DIK+ GI +I+ A+ QA A+ I Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEI 585 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 593 L +M + I+ PR E P + T+++ K +G GG ++ L ETG TI D+ Sbjct: 586 LQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEE 645 Query: 594 TVKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKEG- 647 T + A A I EI ++E G VYT +T I D G V + Sbjct: 646 TFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAV 705 Query: 648 LVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVD-RQGRIRLSIK 690 L+H +Q+ ++++ T L++GQE+ VK D GR+RLS K Sbjct: 706 LLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRK 750 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 271/702 (38%), Positives = 393/702 (55%), Gaps = 37/702 (5%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSF 77 + TG AR A +V + DT+ VT V + + F PLTV+Y+++ AAGRIP + Sbjct: 16 ISTGKFARFADGCAVVEIGDTSAMVTAVSRTRPS-SAGFLPLTVDYRQKAAAAGRIPTTH 74 Query: 78 FRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 RRE ++ E L++RLIDR IRPLFP G++ E QVI+ +++V+ +PDI ++ GAS A Sbjct: 75 LRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASINGASTA 134 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE-AAVLMVESEAQLL 196 L+LS P+NGPIGA RVG ++D+YV+NPT+ +L SKL+LVV G E V+M+E A+ + Sbjct: 135 LALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGSAENV 194 Query: 197 SEDQMLGAVVFGHEQQQVVIQNINELVKEAGK-----PRWDWQPEPVNEALNARVAALAE 251 A+ G ++ Q +I+ I L KE GK P+ PE + E + Sbjct: 195 LLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRTPPKLFTPPEEILEQARQLATERLQ 254 Query: 252 ARLSDAYRITDKQERYAQVDVIKSET---IATLLAEDETLDENELGEILHAIEKNVVRSR 308 +DA K R V I++E + L E E N E + I K V R+ Sbjct: 255 VVFTDATH--HKFSRDNAVQEIRAEVEQKLKELFPEAEPFMIN---ESISVITKQVFRNL 309 Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE- 367 +L R DGR+ +R + + HGSALF RG+TQ L T T + + + +D Sbjct: 310 ILDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPI 369 Query: 368 ---LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 L G + F+ HY FPPY+ ETG V S RRE+GHG LA+ + V+P FP+T Sbjct: 370 AEILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVP--SDFPFT 427 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--------NYV 476 +R+ +E+ ESNGSSSMAS C SLALMDAGVPI + VAG+A+GLV D +Y Sbjct: 428 IRLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNNPTEIQDYK 487 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 +L+DILG ED++GDMDFK+AG++ G++ALQ DIK+ G+ +I+ A QA A+ I+ + Sbjct: 488 LLTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATMAKSDIINI 547 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 M +A+ PR E+ P +K+ K +G GG IR +T ETG TI D+ T Sbjct: 548 MNRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTITQVDEETFS 607 Query: 597 IAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GLVH 650 + A + A I+++ +++ G +YT +T I + G V + + L+H Sbjct: 608 VFAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFPTMQPTLLH 667 Query: 651 ISQIADKRVEKVTDY-LQMGQEVPVKVLEVD-RQGRIRLSIK 690 SQ+ +RV + +GQE+ VK D G +RLS K Sbjct: 668 NSQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRK 709 >UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Helicobacter RepID=PNP_HELHP Length = 709 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/697 (37%), Positives = 406/697 (58%), Gaps = 54/697 (7%) Query: 23 MARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 82 +A+ A ++ + + +V Q+ K +F PL+V Y E+TYA + P F +REG Sbjct: 20 VAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEKTYANNKFPSGFIKREG 79 Query: 83 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 142 +PSE E L +RLIDR +RPLFP+G+ ++ V+S + + + + A+ A+ AL +S Sbjct: 80 KPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDLQLNALNAAACALYVSD 139 Query: 143 IPF----NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE------ 192 +P + + R+G + +++NPT ++L ES+L+L V+G + +LM+E + Sbjct: 140 LPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGRDDELLMIEMKSIRTAQ 199 Query: 193 -AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP--RWDWQPEPVNEALNARVAAL 249 A LSE+ L A+ E + I+N + + P + + E N+ L+ ++ + Sbjct: 200 GANELSEENFLEAL----ECAKNYIKNATQTYHQQFAPYKKSPFAFESANDELDEQLLNI 255 Query: 250 AEAR----LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + +++A + K ER+ Q+ + I ++ E E DE ++ E + A ++ +V Sbjct: 256 IQTHYHTPITEAIKHMAKSERHTQLKAL----IKQVVRECEIEDEKKVQEHIMAYKRKLV 311 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R +L R DGR +R + ++T +LP HGS LFTRG+TQALV+AT+G DAQ Sbjct: 312 REMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSATIGGDNDAQNY 371 Query: 366 DELMGERT---DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 E++G + FLFHYNFP +SVGE M+GS RRE+GHG LAKR + + + + DK Sbjct: 372 -EMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLAKRALHSSVQEQDK-- 428 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 T+R+VSEI ESNGSSSMASVCG SLAL G+ +++ +AG+AMGLV + + +L+DI Sbjct: 429 -TIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQDEQCAILTDIS 487 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDH GDMDFKVAG GISA+QMDIK+ GIT+EI+ AL QAK AR IL +ME+A Sbjct: 488 GLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAKEAREQILAIMEEA-- 545 Query: 543 APRGDI---SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-EDDGTVKIA 598 R I P+ + I P KI +VIG GG VI+ + E +I++ + G V ++ Sbjct: 546 --RAKIVLNDVILPKSESFMIPPHKIVEVIGAGGRVIKDIIERFEVSIDLARESGMVSVS 603 Query: 599 ATDGE---KAKHAI----------RRIEEITAE-IEVGRVYTGKVTRIVDFGAFVAIGGG 644 A++ E KAK I + E++ E VG + GK+ +IVDFG FV + G Sbjct: 604 ASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKIVDFGIFVELPRG 663 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 +GL+HIS+I + +++++ E+ ++L ++ Sbjct: 664 GDGLIHISKITKDKTQQLSEIFHNVSELECEILSQNK 700 >UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG8_9CHLO Length = 791 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 268/703 (38%), Positives = 398/703 (56%), Gaps = 29/703 (4%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 V ETG +AR A++ SM D+ V V + P FFPL V+Y+ER A G+IP Sbjct: 51 VGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPP 110 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 +F RREG P + E L R++DR IRPLFP+ F + V A V++ + +P ++A+ GAS Sbjct: 111 TFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGAS 170 Query: 136 AALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 AALS+S IP+NGP+GA RV + D + +LNP+ +++ SKL L AG E LM+E++A Sbjct: 171 AALSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQA 230 Query: 194 QLLSEDQMLGAVVF-----GHEQQQVVIQNINELVKEAGKPRWD-WQPEPVNEALNARVA 247 E + +VV HE +V+I+ L + GK + D Q P L V Sbjct: 231 GTADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVF 290 Query: 248 ALAEARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + +L Y+ I K R ++ +K E + ++ E + N++ + + V+ Sbjct: 291 DRSSEKLRALYKEEIQCKHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSRVM 350 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R + + R+DGR +R L + VLP HGS++F RG TQAL T T+G DAQ L Sbjct: 351 RDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKL 410 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D +G + HY+FP +S+ ET G RREIGHG LA++ + ++P ++P+ V Sbjct: 411 DAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAV 470 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-------NYVVL 478 R+ +E ESNGSSSMA+VC SLALMDAGVPIK V I++GLV + D Y +L Sbjct: 471 RINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYELL 530 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI+G ED LGDMDFK+AG+R GI+ +Q+D K GI +I+ A++ A AR ++ M+ Sbjct: 531 SDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDEMD 590 Query: 539 QAINAPRG-DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI--EDDGTV 595 +AI+ PR D SE + T++++ I +IG G IR L TG + I EDD V Sbjct: 591 RAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDAGV 650 Query: 596 KIAATDGEKA------KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 T G A A+ +I+ I + G V KV + +G F+ + ++GL+ Sbjct: 651 DDQCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLAYGWFLRLPNEQDGLL 710 Query: 650 HISQ-IADKRVEKVTDYL-QMGQEVPVKVLEVDRQGRIRLSIK 690 H S+ + ++V+ + D + Q+G+EV VK+ +V GR+ LS+K Sbjct: 711 HASEYLHTRKVDPMKDNIFQIGEEVLVKIKDVS-DGRVGLSVK 752 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 399/711 (56%), Gaps = 45/711 (6%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD-FFPLTVNYQERTYAAGRIP 74 + TG +A A + + +DT+V VT + KK P ++ F PL V+Y+E+ AA IP Sbjct: 4 LKFSTGKLALLADGSTVTQYEDTSVLVTAISSKK--PSENSFLPLVVDYKEKASAACLIP 61 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 +F RR+ +E E L+ R IDR +R LF +G+ + Q+I+ +++ + NPD+VA+ GA Sbjct: 62 TTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVNGA 121 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQ 194 SA+L+LS IP+ GP+GA R+G ++ Q V+NP + +L+ S+LDLVV +E+ ++MVE A+ Sbjct: 122 SASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGFAK 181 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARL 254 + ++++ A+ + Q +IQ I EL AGK + + ++ L+ V Sbjct: 182 EVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSYN- 240 Query: 255 SDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENE--------LGEILHAIEKNVVR 306 R T K + + + + I L E + +++ + + +A+ K+V R Sbjct: 241 ----RFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFR 296 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + +L R DGR+ D +R +D + HGS+LF RGETQ TAT G+ A +D Sbjct: 297 ANILEKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVD 356 Query: 367 ELM----GERTDTFLFHYNFPPYSVGETGM-VGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 + G + F+ HY FPP+S E GS RREIGHG LA+R ++ V+P D+ Sbjct: 357 TISEAVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLP--DEL 414 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV----------KE 471 P+T+R+ +E+ SNGSSS+AS C SLA+MDAGVPIK+ VAG A GLV ++ Sbjct: 415 PFTLRLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRD 474 Query: 472 GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 DNY +L+DILG ED+LGDMDFK+AG+R GI+ALQ D K+ G+ I++ A+ + R Sbjct: 475 IDNYQLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRA 534 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 +L VME+ I R + P ++++ K +IG GG VIRAL +E G +I+ + Sbjct: 535 KVLDVMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVE 594 Query: 592 DGTVKIAATDGEKAKHAIRRI----------EEITAEIEVGRVYTGKVTRIVDFGAFVAI 641 + + A D AI +I EE+T+ + G +Y GK+ + +G + + Sbjct: 595 EEEFLVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLEL 654 Query: 642 -GGGKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDRQGRIRLSIK 690 L+H+ ++ RV + ++G V VK L +D +GR+ +S K Sbjct: 655 FADCPTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRK 705 >UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG3_PHYIN Length = 893 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/756 (34%), Positives = 402/756 (53%), Gaps = 89/756 (11%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVV-GQKKAKPG-------QDFFPLTVNYQERT 67 + + G +A+ A AV+ S T + TVV G P +DF PLTV+++ ++ Sbjct: 83 TSYKVGKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKS 142 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 +A G IP + RRE S+ E L +R++DR IRPLFP + QV+ATV S +P +P Sbjct: 143 HAVGLIPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPL 202 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 +VA+ ASA LS+S IP++GP+G RV ++ Q V+NPT + + + +D++ AGT + Sbjct: 203 VVAVNSASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAEHAI 262 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV- 246 MVE+ ++E ++ A+ H I+ +L E GK + ++ P + + A+ Sbjct: 263 MVEASGDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREYSPLFIAPEVWAKAE 322 Query: 247 --------AALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 A +A R++ R ++E Y ++ + AT + +D+ + H Sbjct: 323 ELGRADAEALIASGRVNKLARQEGEREVYNKMLTGMRQHFAT---ANPPVDDAAIQRAAH 379 Query: 299 AIEKNVVRSRVLA-------GEP-RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 + V+R R+L +P R+DGR ++R L+++ VLP HGS+LF RGETQ Sbjct: 380 DTFQRVLRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQT 439 Query: 351 LVTATLGTARDAQVLDELMGERTDT-----------FLFHYNFPPYSVGETGMVGSPKRR 399 L + TLG L + E + + HY FPP+ V ETG VG RR Sbjct: 440 LCSVTLGPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRR 499 Query: 400 EIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKA 459 IGHG LA++ VL ++P + +FPYTVR+ SE+ S+GSSSMA+VCG SLALMDAGVP++ Sbjct: 500 MIGHGALAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRR 559 Query: 460 AVAGIAMGLVKEGD------------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQM 507 AVAGIA+GLV GD NY +++DILG EDH GDMDFKVAG+ G++ALQ+ Sbjct: 560 AVAGIAIGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSGVTALQL 619 Query: 508 DIKIE-GITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN----P 562 D+K+ G+ +++ L +AK ARLHIL M ++ PR + + + I Sbjct: 620 DVKLPGGVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSALPNVSIECVIAT 679 Query: 563 DKIKDVIGKGGSVIRALTEETGTTIEIED--DGTVKI--AATDGEKAKHAIR-------- 610 + I +IG GGS IR L ++ I D +G V++ AA D EKA+ I+ Sbjct: 680 NLIGALIGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAAGDAEKARDWIQTELAGFAS 739 Query: 611 ---------------------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 ++ T G YT V +++DFGA + G+ G V Sbjct: 740 SGPRGSNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAILEASSGQRGFV 799 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRI 685 HIS+++ +V + D + GQE+ + L+ G++ Sbjct: 800 HISELSRDKVSNIHDVVSEGQEMEFECLQDGASGKM 835 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 251/714 (35%), Positives = 393/714 (55%), Gaps = 62/714 (8%) Query: 19 ETGMMARQATAA---VMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 ET ++ + AT A VM+ + + + +V + +DF PL+V Y E+ YA G+IP Sbjct: 41 ETYILDKYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQ 100 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 F ++EG+PS+ E LI+RLIDR +RPLFP+ + VQ+ V+S + +++ AM AS Sbjct: 101 GFLKKEGKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLAS 160 Query: 136 AALSLSGIPFN--GPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE- 192 L LS IP G + RV +D++ L ++L ESKLDL V+G V M+E + Sbjct: 161 ICLYLSSIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQS 220 Query: 193 --------------AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 A +S++ +L A+ + I+ ++ L + +P + E Sbjct: 221 LKTTTQNKDSIIENANEISKNDLLEAINLAKKH----IETMSMLYMKHFEPFILEKREY- 275 Query: 239 NEALNARVAALAEA-------RLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN 291 E N AL E+ + + K ER+ Q+ + E +++ L+ Sbjct: 276 -EGSNKLDLALKESLEKEHTDSIKECLCGMSKTERHTQLIALIKE-----ISQTHNLERE 329 Query: 292 ELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 351 + + + AI+K ++RS +L R DGR IR + + + +LP+THGSA FTRG+TQAL Sbjct: 330 IVAKHVFAIKKEIMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQAL 389 Query: 352 VTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 411 VT TLG+ DAQ + ++ + +FHYNFPP+SVGE +G+ RRE+GHG LA + Sbjct: 390 VTCTLGSQNDAQTQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALK-- 447 Query: 412 LAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 471 A+ ++ P+T+R+VSEI +SNGSSSMASVCGASLAL+ A + + VAGIAMGL+ E Sbjct: 448 -AIESNVANTPHTIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYE 506 Query: 472 GDN-YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 + + +LSDI+G ED GDMDFK+AG+ G SALQ+DIKI G+++ I+ +L QA+ Sbjct: 507 SEERFAILSDIMGLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGI 566 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 LHIL +M P E P+ + + I ++IG+GG IR + +I I+ Sbjct: 567 LHILSLMRNVEIKPN---YELLPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINID 623 Query: 591 -DDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 D+G V I+A + + ++A +R+ E+ +VG G V++ V+ G V + Sbjct: 624 KDEGIVHISANNKDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLA 683 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 G G++ R + + LQ+GQ + V++L G+ L I + E++ Sbjct: 684 QGGNGIL--------RTISMQEELQIGQALSVRILSCS-YGKTELEIIDKKEEN 728 >UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 Tax=Helicobacter RepID=PNP_HELPJ Length = 688 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/704 (35%), Positives = 393/704 (55%), Gaps = 51/704 (7%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G T +A+QAT+++M + T + +V +++ +DF PL V + E++YAAG Sbjct: 9 GNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREP-VSEDFLPLVVQFLEKSYAAG 67 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 +IPG F +REGR + E L +RLIDR +RPLFP+ + Q+ V++ + + + + A+ Sbjct: 68 KIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDLQVSAL 127 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 ASA L L+ I + A R+ +++++++NP+ L +S LDL V+GT+ ++ M+E Sbjct: 128 NAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESLNMIEM 187 Query: 192 EA-----QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE-----A 241 + L E ML A+ E Q ++ L +EA P +Q E + + Sbjct: 188 RSLGQKLNALEEPLMLEAL----ELAQKSLKETCALYEEAFTP---YQNELLFKEGEGIV 240 Query: 242 LNARVAALAEARLSD-------AYRITDKQERYAQVDVIKSETIATLLAEDETLDENELG 294 LN R+ L + + D + +++++ + +V SE + +L+E EL Sbjct: 241 LNERLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEAHSEF-----SLEEIELS 295 Query: 295 EILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTA 354 L ++K +R ++ + R D R + +R + + + +LP H S LFTRG+TQ+LV Sbjct: 296 --LEKVKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVG 353 Query: 355 TLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL 412 LG DAQ + L + + F+FHYNFPP+ VGE +G+ RRE+GHG LAKR + Sbjct: 354 VLGMDNDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALE 413 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG 472 + + ++ +R+VSEI ESNGSSSMASVC SLAL +GV I VAG+AMG+V E Sbjct: 414 TSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSER 470 Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 ++ +LSDI G ED GDMDFK+AG+ +GI+A+QMD K+ GI E++ AL QAK AR H Sbjct: 471 QDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKRARKH 530 Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED- 591 IL +M +A + S P+ + PDKI ++IG+GG VI+ + E+ I++ Sbjct: 531 ILKIMHEAKEKIVINFSHL-PQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNTP 589 Query: 592 DGTVKIAATDGE--KAKHAI-RRIEEITAEIE---VGRVYTGKVTRIVDFGAFVAIGGGK 645 G VKI K K I + + E+E + V +V RIVDFGAF+++ G Sbjct: 590 SGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGG 649 Query: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 EGL+ + ++K L+ G + +V+ ++ G+I L + Sbjct: 650 EGLLR-----KQNMDKCQVILKEGDSIRCRVISFNK-GKIALDL 687 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/703 (35%), Positives = 387/703 (55%), Gaps = 23/703 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVG-QKKAKPGQDFFPLTVNYQERTYAAGRIP 74 + ETG +AR A AV+VS +T+V TVVG A DF PLTV++Q+ A GRIP Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 ++ RRE + ++ + L +R+IDR IRPLFP+ + E Q+I ++V+ +P ++ + A Sbjct: 105 MNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAA 164 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA--VLMVESE 192 SAAL+LS IP+ GP+GA RV IN++ V+NP++ +K S +DLV+AG + +LM++ + Sbjct: 165 SAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRILMIDMD 224 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEA 252 + + + G + +IQ IN++ G+P+ E ++ L A + Sbjct: 225 GCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDIDLIALTEEMHVL 284 Query: 253 RLSDAYRI-TDKQERYAQVDVIKSETIATLLAE-DETLDENELGEILHAIEKNVVRSRVL 310 Y+I T+ + D SE LL + E ++L + K +R + Sbjct: 285 CGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKFKERSSPHKLRHTFRNLLKRSLREALF 344 Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL---GTARDAQVLDE 367 E R DGR+ + +R +++R V HGSALF RG+TQ T T A L + Sbjct: 345 KSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDALSQ 404 Query: 368 LMG-ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 L+G ++ F+ HY FP ++ RRE+GHG LA++ + ++P D FPY +R Sbjct: 405 LLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIP--DDFPYCLR 462 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV--KEGDNYVVLSDILGD 484 + ++ ESNGSSSMASVC LAL+DAGV IKA AGIAMGL+ +E ++Y +L+DI G Sbjct: 463 LACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDYRILTDINGL 522 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 ED GDMDFK+AG+ G +A+Q+D+K+ GIT +++ +L QA+ H+L +M++A Sbjct: 523 EDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQLMKKAQPVS 582 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG-- 602 R P TI + K + GG + + ETG I IEDD + I A + Sbjct: 583 RDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNISIFAPNKVK 642 Query: 603 -EKAKHAIRRIEEITAEIEV--GRVYTGKVTRIVDFGAFVAIGGG-KEGLVHISQIADKR 658 E+AK + ++ E EI++ G +Y ++T ++D G V + G K L+ S + + Sbjct: 643 LEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILLKNSNLDVRN 702 Query: 659 V--EKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 V KV + ++GQ++ ++ L D G R+S K S P Sbjct: 703 VAHAKVLGF-KVGQKIIIQYLGRDPYTGYHRISRKTLQSASLP 744 >UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S0I5_TRIAD Length = 741 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/696 (33%), Positives = 359/696 (51%), Gaps = 68/696 (9%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + G +A A +V+V TAV VT V + F PL V+Y+E+ A G Sbjct: 50 GNSEIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATG 109 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 +IP +FF+RE PSE E L +R IDR IR F G EVQ++ +++S + + + + A+ Sbjct: 110 KIPVNFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIVPAI 169 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 G GA RVGYIND+ ++NPT+ EL +SKLDLV+ + ++M+E Sbjct: 170 NG----------------GAVRVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEG 213 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAE 251 A L + +L A+ +G E+ Q V++ + + GK + + ++E++ L Sbjct: 214 TASELPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLTFYRLDESIKEGAYNLIG 273 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 +++D K R + E TL D +L + ++ K + V Sbjct: 274 DQINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNV 333 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 + R DGR + +R +D + P HGS+LF RGE+Q Sbjct: 334 MTKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ-------------------- 373 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 FPPY+ E G V RREIGHG LAK + +V+ D FP+TVR+ Sbjct: 374 ------------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVVSD--DFPFTVRLTG 419 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------NYVVLSDILG 483 ++ SNGS+SMAS CG SLALMDAGVPI +AG+AMGLV NY +L+DI G Sbjct: 420 QVLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAG 479 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED+ G+MDFK+AGSR+GI++LQ D K+ G++ E+++ A+ ++ AR +L +M I+ Sbjct: 480 IEDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDK 539 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 PR D+ AP + + K ++G GG I+ L EE G I D+ V I A + Sbjct: 540 PRLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAK 599 Query: 604 KAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKEG-LVHISQIADK 657 + +RIEE+ A +++ ++YTGK+ I +FG + + + L+H+SQ+ + Sbjct: 600 ALANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHR 659 Query: 658 RVEK--VTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 690 RV + + Y +G E+ VK D R RLS K Sbjct: 660 RVSRPELLGY-SIGHEMTVKCFGRDPITNRYRLSRK 694 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 224/623 (35%), Positives = 342/623 (54%), Gaps = 43/623 (6%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G++++ L+TG MAR A+AAV+ S D +V TVV +K+ + + PL V Y+ A G Sbjct: 34 GKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYRPSASAVG 93 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIP +F RRE S+ E LI+R IDR IRPL P E QVI ++++ + ++ + Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLMPANSY-ETQVICKPLALDENADQIMLGI 152 Query: 132 IGASAALSLSGIPFNGPIGAARV-----GYINDQYVLNPTQDELKESKLDLVVA-GTEAA 185 AS+AL +S PFNGP+ A RV G I + +NP Q+ELK S ++++VA Sbjct: 153 NAASSALHISSAPFNGPLAAIRVSMDPRGKI---FHVNPGQEELKASSMNMIVAMRRNQK 209 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINEL---VKEAGKPRWDWQPEPVN--E 240 +M+E + + +Q+ E V QN+ L + E G D PE E Sbjct: 210 TVMIELDGEETRGEQL-------EEALDVAFQNVERLHVAMDELGGIEKDELPEKTTTME 262 Query: 241 ALNARVAALAEARLSDAYRITD----KQERYAQVDVIKSETIATLLAEDETLDENELGEI 296 L + ALA R+ Y +TD K R ++ I + I T + ++ + Sbjct: 263 ILEI-LEALARERI--YYVMTDSTHDKISRDEEIKAIMEDVIGTEALQ--PFPPADIYQC 317 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 + K V+R L+ R DGR R + ++ + + HG ++F RG+TQ + T T Sbjct: 318 WSFLVKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTF 377 Query: 357 GTARDAQVLD---ELMG-ERTDTFLFHYNFPPYSVGETGMVGSP--KRREIGHGRLAKRG 410 + A D +L+G +R +F+ HY FP ++ + G+ S RREIGHG LA++ Sbjct: 378 DSPTAAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALAEKA 437 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV- 469 + + P FPY VR+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+GL+ Sbjct: 438 LKPLFPT--GFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLIS 495 Query: 470 --KEGD-NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 KE + NY VL+DILG ED+ GDMDFK+AG+++G +A Q+D+K +G+T++ ++ +L+ A Sbjct: 496 DEKEPETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAA 555 Query: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT 586 + H+LG M + PR P I +++I P K + G + + ETG Sbjct: 556 RAGIDHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVK 615 Query: 587 IEIEDDGTVKIAATDGEKAKHAI 609 I +ED+ + + A EK + A+ Sbjct: 616 ISVEDESNISLLAPSQEKLQKAL 638 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 220/648 (33%), Positives = 339/648 (52%), Gaps = 42/648 (6%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-DFFPLTVNYQERTYAA 70 G+ + L+ G +AR A++ V+ S D AV TVV Q+K+K G PL V Y+ A Sbjct: 34 GKSGIELKAGHLARFASSTVVASFGDNAVMATVV-QRKSKQGDGSGVPLQVEYRPSASAI 92 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 GRIP +F RRE S+ E LI+R IDR IRPL P G E Q+I ++++ + ++ Sbjct: 93 GRIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDENADQIMLG 151 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNPTQDELKESKLDLVVA-GTEAAVLM 188 + AS AL +S +NGP+ A RV + +NPTQ+EL+E+ L+L+VA +M Sbjct: 152 INAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMRKHEKTVM 211 Query: 189 VESEAQLLSEDQMLGA--VVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV 246 +E + + S + + A V F H + ++E +++ EP +E + Sbjct: 212 IELDGRESSAEHLEHALDVAFRH------VAKLHEAMEQ-------LTAEPKDELASEDF 258 Query: 247 AALAE-----ARLSDAYRITDKQERYAQVDVIKSETIATLLAED--ETLDENELGEILHA 299 + L AR Y ITD D+ + AE +T +++ + Sbjct: 259 SGLERLLEETARERIYYVITDAGHDKISRDMEIKAIFEEICAEKAFQTCEKDAIYRTYST 318 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT- 358 + K V+R L R DGR D R + + + + HG ++F RG+TQ + T T + Sbjct: 319 LVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSP 378 Query: 359 --ARDAQVLDELMG-ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 A + +L+G +R +F+ HY FP +++ E G S RREIGHG LA++ + + Sbjct: 379 AAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLF 438 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG--- 472 P FPY R+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+GL+ + Sbjct: 439 PA--DFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEP 496 Query: 473 -DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 Y VL+DILG ED+ GDMDFKVAG+RDG +A Q+D+K G+T+ + +L A+ Sbjct: 497 ETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGID 556 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 H+L M + PR P I +++I P K + G + + ETG I ED Sbjct: 557 HVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAED 616 Query: 592 DGTVKIAATDGEKAKHAIRRIEEI-----TAEIEVGRVYTGKVTRIVD 634 + + + A D EK + A+ + ++ T + G + ++ +V+ Sbjct: 617 EAHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEVVN 664 >UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D77_OSTTA Length = 615 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 203/505 (40%), Positives = 282/505 (55%), Gaps = 55/505 (10%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 + + G V LETG + QA AVM S DT ++ T ++ F PLTVNY ER Sbjct: 74 ELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSERF 133 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 AAGR G F +R+G SE ETL ARL+DRPIRP+ P+G+ + QV+ ++S + + + D Sbjct: 134 SAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERSTD 193 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVVAGTEAA 185 +A+ ASAAL++S IP P+ RVG + +D+ ++NP+Q+++KES+LDLV+AGT+ A Sbjct: 194 ALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGTDEA 253 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ----PEPVNEA 241 VLM+E L+ D+ML A+ GHE + I+ + P+ + + PE V+EA Sbjct: 254 VLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEGVDEA 313 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL----------LAEDETLDE- 290 V AL A L++A I KQ R A + + + L LA LD Sbjct: 314 ----VEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDCA 369 Query: 291 -------------------------NEL-GEILH--------AIEKNVVRSRVLAGEPRI 316 N L G H +E +R + R Sbjct: 370 LPIRRNRFSREFVGCGSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKGRRQ 429 Query: 317 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 376 DGR M+R + G+LPRTHGSALFTRGETQA+ ATLG +DAQ +D++ F Sbjct: 430 DGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDKRF 489 Query: 377 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 436 + HY FPP SVGETG +G RRE+GHG LA+R + ++P ++FP+ R+ S ITESNG Sbjct: 490 MLHYFFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITESNG 549 Query: 437 SSSMASVCGASLALMDAGVPIKAAV 461 SSSMA+VC +LAL+DAGVP+K V Sbjct: 550 SSSMATVCAGTLALLDAGVPLKRYV 574 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 231/674 (34%), Positives = 360/674 (53%), Gaps = 65/674 (9%) Query: 58 PLTVNYQERTYAAGRIPGSFFRR---EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI 114 PL V+Y+ER +AAG+IP RR G ++ E L +R+IDR IRP G + + I Sbjct: 1 PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60 Query: 115 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ----YVLNPTQDEL 170 + + N VN ++ + S A S++G F P+ AA + Q V +P+ +E Sbjct: 61 S--LPGNIVVNCEVQSY--DSRASSINGKKFPVPLKAAACVKLAIQRDGSVVYDPSPNES 116 Query: 171 KESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 +++K +L+ AGT+ VLM+E E +SE + A++ E +I+ +L + Sbjct: 117 EDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQLRQNYRYNA 176 Query: 231 WDWQPEPVNE--------ALNA--RVAALAEARLSDAYRIT-DKQERYAQVDVIKSETI- 278 D E + LN+ L E D ++ D E + I + Sbjct: 177 SDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLFGDNGEESPTIQNIPAHIHD 236 Query: 279 ATLLAED-----ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 333 TLL++ E + ++E+ +L N+ R DGR + +R + T + Sbjct: 237 GTLLSKQVRGRREYIVKSEITRLLKCAMINL----------RADGRGTNAVRPISATTPI 286 Query: 334 LPRT-HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM 392 P HGS+ F+RGETQ + TA++G D + + HY+FP +S G Sbjct: 287 FPDCVHGSSQFSRGETQVICTASIGAPSDG--VPHASPYSDSSAFLHYDFPDFSTGTVKS 344 Query: 393 VG--SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 G S RR IGHG LA++ VL V+P++ FPY VR+ E+T SNGSSSMA+ CG++LAL Sbjct: 345 KGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSSMAAACGSTLAL 404 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 +DAGVP+ + VAG+++GL D+ +L DI G EDH GDMDFKV G+ G+ ++Q+D+K Sbjct: 405 LDAGVPLVSPVAGVSVGLTP--DSKTLLLDITGTEDHYGDMDFKVCGTSGGVLSMQLDVK 462 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINA--PRGDISEFAPRIHTIKINPDKIKDV 568 +T +++ AL+ AK R IL M + + PR + APRI +K +P++ +D+ Sbjct: 463 -NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDL 521 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTV--KIAATDGEKAKHAIRRIEEITAEIEVGRVYT 626 IG GGSV+R L + ++++ DG + + A G K R I ++ A++E G VY Sbjct: 522 IGPGGSVLRQLEDRFNVSLDLSQDGLIFGALQAVSGAK-----RVIMDLVADVEEGGVYE 576 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK--------VTDYLQMGQEVPVKVLE 678 G V I DFGA V + KEGL+H+S++ADK EK + D+L++G ++ V + Sbjct: 577 GTVIEIKDFGAVVELLRNKEGLLHVSELADK-TEKHPEGNMGLLRDHLKVGDKIEVLCTK 635 Query: 679 VDR-QGRIRLSIKE 691 +D QG I+LS K+ Sbjct: 636 IDHVQGSIKLSRKK 649 >UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAY8_MONBE Length = 629 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 196/599 (32%), Positives = 304/599 (50%), Gaps = 44/599 (7%) Query: 2 LNPIVR---KFQYGQH-TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 57 L+P+VR + G H T G +A QA AV ++D + P Sbjct: 33 LSPVVRITSEAATGSHEPATFTCGALAYQADGAV--TLDQACPL-------HSTPSPFLT 83 Query: 58 PL--TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA 115 PL V+Y+ER A IP SF RREG + ETL+ARL+DR +RPL P Q+ Sbjct: 84 PLLQQVDYRERGTAVNLIPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTV 143 Query: 116 TVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND----------QYVLNP 165 +++ ++ P + ++ ASAAL +S I ++GP+ A RVG + ++NP Sbjct: 144 KLLASQARMEPTVQSIEAASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINP 203 Query: 166 TQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 E E L+ +G +A +M++ E L + A+ H+ Q ++ EL + Sbjct: 204 DHKETAECVGVLLYSGVQAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGER 263 Query: 226 AGKPRWDWQPEPVNEALNARVAALAEARLS--DAYR--ITDKQERYAQVDVIKSETIATL 281 AG+ + EP+ AL AA+ + S + R + K++R +++ I + A L Sbjct: 264 AGRTKKPLLREPL--ALGIMAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADL 321 Query: 282 LAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSA 341 L + + + L + K +R VL+ + RIDGR+ D ++ + + P HG++ Sbjct: 322 LQQFPMAGLRLVDDALEEVLKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNS 381 Query: 342 LFTRGETQALVTATLGTARDAQVLDELMG-----ERTDTFLFHYNFPPYSVGETGMVGSP 396 LF RGETQ TATLG + LDE+ +F F Y FP Y++ + + Sbjct: 382 LFQRGETQVFCTATLGDRDAVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQ 441 Query: 397 KRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVP 456 RRE GHG LA+R L M D + TVRV S++T S GSSSMASVCG SLA+MDAGVP Sbjct: 442 MRRETGHGSLAERA-LGRMID-PGYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVP 499 Query: 457 IKAAVAGIAMGLVKEGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 ++A VAG++ GLV D Y +L+D+ G ED G MD K+A ++ G++A+Q D + Sbjct: 500 LRAPVAGLSCGLVGYTDEEGQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTE 559 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI 569 + GI+ ++++ A+ + + +L M A+ A R D P PD + ++ Sbjct: 560 LRGISLDVLEEAMQRTFDGKQVVLKEMNAAMPATRTDPKACHPMTCESSSAPDAFQPLL 618 >UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SQL7_TETNG Length = 556 Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 156/440 (35%), Positives = 250/440 (56%), Gaps = 15/440 (3%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSF 77 + +G +AR A + +V + +T+V VT V + K P Q F PL V+Y+++ AAGRIP ++ Sbjct: 5 ISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRIPTNY 63 Query: 78 FRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 RRE ++ E L +RLIDR +RPLFP G+ + QV+ +++V+ +PD++A+ ASAA Sbjct: 64 LRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINAASAA 123 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVESEAQLL 196 L+LS IP+NGPIGA RVG ++ + ++NPT+ E+ S L+LVV+G ++ V+M+E+ A+ + Sbjct: 124 LALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEASAENV 183 Query: 197 SEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD-----WQPEPVNEALNARVAALAE 251 + AV G + Q +I I +L +E + P V E + + Sbjct: 184 LQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAPADVVEYVRQVASESIY 243 Query: 252 ARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLA 311 A +D DK R ++ ++ ET T+ + E+ E + + K++ R+ VL Sbjct: 244 AVFTDYTH--DKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNLVLN 301 Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD----E 367 R DGRE +R + + HGSALF RG+TQ L + T + + D Sbjct: 302 EYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIITTA 361 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV 427 L G + F+ HY FPPY+ ETG V RRE+GHG LA++ + +V+P +FP+T+RV Sbjct: 362 LSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIP--KEFPFTIRV 419 Query: 428 VSEITESNGSSSMASVCGAS 447 +E+ ESNG +++ A+ Sbjct: 420 TAEVLESNGEYAVSETAPAT 439 >UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVX4_PHATR Length = 956 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 242/477 (50%), Gaps = 86/477 (18%) Query: 298 HAIEKNVVRSRVLAGEPRIDGRE-----KDMIRGLDVRTGVLPRT-HGSALFTRGETQAL 351 H ++K V+S L G R DGR IR L V+ LP T HGSALF RG+TQ L Sbjct: 469 HLLQKGFVQS-ALQGGARADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFARGDTQVL 527 Query: 352 VTATLGTARDAQVLDELM-----------GERTDTFLFHYNFPPYSV------------- 387 TATLG D Q + + G T ++ P S+ Sbjct: 528 CTATLGPPGDGQPMKDPYLATDNPRRVKSGAETTAAGYYSELPVGSLRFLRTQESLVSDM 587 Query: 388 ------------GETGMVGSPKR------------------------REIGHGRLAKRGV 411 G++G + KR R IGHG LA++ + Sbjct: 588 NSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVPIGSQAHNRRAIGHGALAEKAL 647 Query: 412 LAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 471 L V+PD FPY +R+ SE+T+SNGSSSMASVCG +LAL+DAGVPI+ VAG+++GL ++ Sbjct: 648 LPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVSVGLARD 707 Query: 472 GDN-----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 D + +L DI G ED+ G MDFK+AG+R GI+A Q+D+K + + EI+ AL A Sbjct: 708 VDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQLDVK-QLLPLEIVTEALQLA 766 Query: 527 KGARLHILGVMEQAIN---APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 583 R IL M+ + R + APR+ ++ NP + +D++G GG ++R L + Sbjct: 767 CRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQRKRDLVGPGGIILRQLEDRY 826 Query: 584 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 G +++ +G + D E A + ++ A++ G VY G + I DFGA V + Sbjct: 827 GVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEVYEGTIIEIKDFGAIVELLR 886 Query: 644 GKEGLVHISQIADKR---------VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 690 KEGL+H+S++ +++ V YL+ GQ+V V +VD QG IRLS K Sbjct: 887 NKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVLCTDVDPVQGSIRLSRK 943 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD------FFPLTVNYQERTYA 69 + TG +AR ++V+ T V TV Q P D F LTV+Y++R + Sbjct: 63 IQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTF-LTVDYRQRYHG 121 Query: 70 AGRIPGSFFRREGRP-SEGETLIARLIDRPIRPLF 103 G+IP + RR+ S E L +R IDR +RPL Sbjct: 122 VGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLI 156 >UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698C2E Length = 205 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 5/194 (2%) Query: 149 IGAARVGYINDQYVLNPTQDELK-ESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVF 207 +GA RVGY + +Y+LN L +S LDL+VAGTE AVLMVESEA LSE+ MLGAV+F Sbjct: 9 VGACRVGYKDGEYILNAASTGLSADSDLDLIVAGTEEAVLMVESEANELSEEVMLGAVLF 68 Query: 208 GHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERY 267 GHEQ Q+VI IN L E GK +++ V+EAL A VA AE + DAY I DK ERY Sbjct: 69 GHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLERY 128 Query: 268 AQVDVIKSETIATLLA----EDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDM 323 A D +K T+ L + E+ +E+ L ++K +VR R+L GEPRIDGR+ Sbjct: 129 AAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDTRT 188 Query: 324 IRGLDVRTGVLPRT 337 +R + VRTGVLPRT Sbjct: 189 VRPISVRTGVLPRT 202 >UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=uncultured bacterium URE12 RepID=C0JZU1_9BACT Length = 316 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 1/246 (0%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK-PGQDFFPLTVNYQERTY 68 Q G T+ ETG +A+QA AV + + +T VF K K +F PL+ +Y+E+TY Sbjct: 13 QVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCDYREKTY 72 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAG+IPG FF+REG+ + E L +RL DR +RPLFP+ F E QV + V+S + + D+ Sbjct: 73 AAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADGKNEADV 132 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLM 188 +++ +SAAL +S IPFNGP+GA R+G N +++ P +E +++LV++GT +LM Sbjct: 133 LSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGTRQGILM 192 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAA 248 VE + + ++ A+ H + + E+ K GK + +N L A V Sbjct: 193 VEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPELKAAVEE 252 Query: 249 LAEARL 254 ++ L Sbjct: 253 MSREPL 258 >UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36465 Length = 192 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/141 (52%), Positives = 99/141 (70%) Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 ++AP+I I I+P KI DV+GK G VI + EETG I+I DDG+V + TD + AI Sbjct: 2 KYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARAI 61 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 I+ I +IE G V GKV RI++FGAFV + K+G+VHIS+++DKRVEKV D + +G Sbjct: 62 EIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNIG 121 Query: 670 QEVPVKVLEVDRQGRIRLSIK 690 EV V+VLEVD+ GRI LS+K Sbjct: 122 DEVTVRVLEVDKMGRINLSMK 142 >UniRef50_Q0PQM6 Polyribonucleotide nucleotidyltransferase (Fragment) n=2 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQM6_9GAMM Length = 137 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/101 (66%), Positives = 80/101 (79%) Query: 497 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 556 G+ GI+ALQMDIKI GITKEIM++AL QAK RLHIL M + I++ RG++SE APRI Sbjct: 29 GTAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRII 88 Query: 557 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 IKINPDKI+DVIGKGG IR +TE TG T++I DDG VKI Sbjct: 89 EIKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVKI 129 >UniRef50_UPI0001AF367B BCCT transporter n=2 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF367B Length = 215 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/91 (61%), Positives = 72/91 (79%) Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 +G A+ A +R+ ITAE E+G++Y GKV RIVDFGAFV I GK+GLVHIS ++D RVE Sbjct: 116 EGGTAEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVE 175 Query: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 KVTD L+ G+EV V VL+VD +GRI+LSIK+ Sbjct: 176 KVTDILKEGEEVEVLVLDVDNRGRIKLSIKD 206 >UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=Amniota RepID=C9J2E0_HUMAN Length = 179 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ AAG Sbjct: 52 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAG 110 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ PD++A+ Sbjct: 111 RIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAI 170 Query: 132 IGA 134 G Sbjct: 171 NGG 173 >UniRef50_UPI0001909761 polynucleotide phosphorylase/polyadenylase n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI0001909761 Length = 112 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 1/94 (1%) Query: 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 YVLNP DE+ ES LDLVVAGT AVLMVESEA+ L+E+ MLGAV+FGH Q V+ I Sbjct: 1 YVLNPHLDEMDESSLDLVVAGTYDAVLMVESEAKELNEEVMLGAVMFGHNGFQPVLDAII 60 Query: 221 ELVKEAGKPRWDWQPEPVNEALNARVAALAEARL 254 +L + A K D+QPE + AL + LAE L Sbjct: 61 KLAEVAAKEPRDFQPEDYS-ALETEMLGLAEGEL 93 >UniRef50_P37560 Uncharacterized protein yabR n=35 Tax=Firmicutes RepID=YABR_BACSU Length = 128 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 2/84 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG GK+T I +FGAFV + GG GLVHIS++AD V+ + D+L++G +V VKV+ Sbjct: 3 IEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVIN 62 Query: 679 VDRQGRIRLSIKEATEQSQPAAAP 702 V++ G+I LSIK+A + +P A P Sbjct: 63 VEKDGKIGLSIKKA--KDRPQARP 84 >UniRef50_B0PAJ2 Putative uncharacterized protein n=6 Tax=Bacteria RepID=B0PAJ2_9FIRM Length = 163 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 41/94 (43%), Positives = 62/94 (65%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++EVG + G+VT I FGAF+ + GGK G+VHIS++A V+++TDYL M Q V VK++ Sbjct: 2 QLEVGSILEGRVTGITKFGAFIELPGGKTGMVHISEVASSYVKEITDYLSMNQMVKVKII 61 Query: 678 EVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + +G++ LSIK+A S AP A +G+ Sbjct: 62 GITPEGKVSLSIKQAAPASPTQDRQPAPRALRGQ 95 >UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacillales RepID=RS1H_BACSU Length = 382 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 2/81 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E+ +EVG V GKV R+ DFGAFV IGG +GLVHISQ++ VEK +D ++ GQEV Sbjct: 179 QELLQSLEVGSVLDGKVQRLTDFGAFVDIGG-IDGLVHISQLSHSHVEKPSDVVEEGQEV 237 Query: 673 PVKVLEVDRQG-RIRLSIKEA 692 VKVL VDR RI LSIK+ Sbjct: 238 KVKVLSVDRDNERISLSIKDT 258 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 +I +++ G V G V R+V FGAFV I G EGLVHISQI++K + + L+ GQ V Sbjct: 265 QIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVK 324 Query: 674 VKVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 VKVL+V+ + RI LS++E E P A E Sbjct: 325 VKVLDVNENEERISLSMRELEE--TPKADQE 353 >UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacillaceae RepID=RS1H_BACC1 Length = 382 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E I E++ G + G V R+V FGAFV I G EGLVH+SQIA++ V+ + L+MGQEV Sbjct: 265 ENIAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEV 324 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQS 696 VKVLEV + RI LSIKEA E++ Sbjct: 325 KVKVLEVHVAEKRISLSIKEAFEEN 349 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 9/90 (10%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K K AI ++E G V G V R+ DFGAFV +GG +GLVHISQI+ +RVE+ + Sbjct: 178 KKKEAISSLKE-------GDVVEGTVQRLTDFGAFVNVGG-VDGLVHISQISHERVEQPS 229 Query: 664 DYLQMGQEVPVKVLEVDRQG-RIRLSIKEA 692 + L+ GQ+V VKVL VD RI LSIK A Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAA 259 Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 44/65 (67%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + E++VG V TG VT++ + V +G +G++ IS++A+ +EK +D +++ Q + +K Sbjct: 12 SKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELK 71 Query: 676 VLEVD 680 +++++ Sbjct: 72 IIKLE 76 >UniRef50_Q03SZ4 RNA binding protein (S1 domain) n=105 Tax=Firmicutes RepID=Q03SZ4_LACBA Length = 181 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 2/82 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG TGKV+ I +FGAFV +G K GLVHIS+I+D V+ + D L +G EV VKVL Sbjct: 3 IEVGAKVTGKVSGITNFGAFVDLGDHKTGLVHISEISDGYVKDIHDVLSVGDEVTVKVLT 62 Query: 679 VDRQGRIRLSIKEATEQSQPAA 700 V G+I LSI++AT+ PA+ Sbjct: 63 VGDDGKIGLSIRKATD--HPAS 82 >UniRef50_A8MK30 RNA binding S1 domain protein n=32 Tax=Firmicutes RepID=A8MK30_ALKOO Length = 142 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 56/85 (65%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG + G V+ I +FGAF+ +G GK GLVHIS++AD V+ + DYL+ Q+V VKVL + Sbjct: 4 QVGAILDGTVSGITNFGAFIDLGEGKTGLVHISEVADDYVKNIHDYLKTQQKVKVKVLSI 63 Query: 680 DRQGRIRLSIKEATEQSQPAAAPEA 704 + G+I LSIK+A + P A Sbjct: 64 EDNGKISLSIKQAALPKKKTVKPPA 88 >UniRef50_Q724J5 RNA-binding protein n=80 Tax=Firmicutes RepID=Q724J5_LISMF Length = 142 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG GKVT I +FGAFV + GGK GLVHIS++AD V+ + D L +G EV VKV+ Sbjct: 3 IEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVMN 62 Query: 679 VDRQGRIRLSIKEATEQ 695 + G+I LSI++A ++ Sbjct: 63 IGDDGKIGLSIRKAVDR 79 >UniRef50_A6CB07 30S ribosomal protein S1 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CB07_9PLAN Length = 572 Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 G +GKVTR DFGAF+ + G EGL+HIS++ +RV++VT+ L GQE KVLEVD Sbjct: 451 TGSTISGKVTRTTDFGAFIELEPGLEGLIHISELDHRRVKRVTEVLTTGQETSAKVLEVD 510 Query: 681 -RQGRIRLSIKEATEQSQPAAAP 702 + RI LSIK ++ + A AP Sbjct: 511 PNRKRISLSIKALIDKPEAAEAP 533 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 52/79 (65%), Gaps = 2/79 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E+ ++ +G+ +TG V I D+GAFV +GG +G +HI +I+ R++ D L Q++ Sbjct: 359 ELWEKLAIGQEHTGTVKNIKDYGAFVDLGG-IDGFLHIGEISWNRIKHPKDALSEHQQIN 417 Query: 674 VKVLEVDRQ-GRIRLSIKE 691 VK+L++D++ RI L +K+ Sbjct: 418 VKILKIDKEKNRISLGMKQ 436 >UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RIU7_MOOTA Length = 736 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 10/127 (7%) Query: 595 VKIAATDGEKAKHAIRRIE------EITAE-IEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 VKI D E+ K ++ R + + AE VG + GK+ R+ FGAFV + G EG Sbjct: 589 VKILGIDREEGKVSLGRKQLLPNPWDTAAERYPVGTIVEGKILRLAPFGAFVEVEPGIEG 648 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT-EQSQPAAAP-EA 704 LVHISQ+AD+ V+K D + +G +PVKVL VD+Q R+ LS+++A E+++ A P E Sbjct: 649 LVHISQLADRHVDKPEDVVSIGDIIPVKVLGVDQQAQRMSLSLRQAIREKNRKQAKPAEK 708 Query: 705 PAAEQGE 711 PA Q E Sbjct: 709 PAENQNE 715 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG+V G V R+ +FGAFV +GG +GL+H+S+I+ RVE D L GQE+ VK+L Sbjct: 535 LEVGQVRKGIVRRLTNFGAFVDLGG-VDGLLHVSEISWGRVEHPRDALSEGQEIEVKILG 593 Query: 679 VDR-QGRIRLSIKEATEQSQPAAAPEAP 705 +DR +G++ L K+ AA P Sbjct: 594 IDREEGKVSLGRKQLLPNPWDTAAERYP 621 >UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHT6_ANAPD Length = 686 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 14/133 (10%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIV 633 E + + D+ VKI + EK + ++ R E + EVG V TGKV ++ Sbjct: 503 EHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNLL 562 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 DFGAFV + G EGLVH+S+I+ + VEK +D L +G E+ VK++ +D + ++ LSIK Sbjct: 563 DFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKAL 622 Query: 693 TEQSQPAAAPEAP 705 E APE P Sbjct: 623 KE------APERP 629 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 9/109 (8%) Query: 595 VKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 +KI + D K + + R ++ + E+E G+V TGKV R+ DFGAFV + G +G Sbjct: 432 LKIISIDERKNRLVLSRKEVVEDELDGLWEELEEGQVVTGKVARLTDFGAFVEVNG-LDG 490 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 L+H+S IA RVE +D L +G E+ VK+L+++++ RI L K+ E+ Sbjct: 491 LLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEK 539 >UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXA3_9CLOT Length = 388 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + + ++G V G+V ++ FGAFV I G EGLVHIS+I+++R+ K +D L +G +V Sbjct: 278 ESVGNKFKIGDVVEGEVLKLASFGAFVEIQPGVEGLVHISEISEERIAKPSDVLNLGDKV 337 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQ 695 VK+L++D ++ RI LSIK+A E+ Sbjct: 338 RVKILDIDNKENRISLSIKDAVEK 361 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 13/114 (11%) Query: 594 TVKIAATDGEKAKHAIRR--IEEITAE---------IEVGRVYTGKVTRIVDFGAFVAIG 642 TVK+ D +K K + R IE+ AE I+ G +G V+R+ FGAFV +G Sbjct: 163 TVKVIEFDKDKEKVVLSRKVIEKAEAEEKKQHLLNSIKPGEKRSGVVSRLAKFGAFVDLG 222 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 G +GL+H+S+++ KRV D + +G +V V +L VD++ +I L++K+ E Sbjct: 223 GV-DGLIHVSELSWKRVNNPADVVSVGDKVEVYILSVDKENNKIALALKDVNEN 275 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 11/108 (10%) Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK 645 T EI+D ++K D E + +IRR G V GK+ + + A V IG Sbjct: 2 TEEIKDTNSMKEFMEDIESSMKSIRR----------GEVVKGKIISVTENHAIVNIGYMS 51 Query: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEA 692 +G++ S++ + + ++D L+ +E+ V VL++ D +G + LS K A Sbjct: 52 DGILSKSEVVENEEDNLSDILKENEEIYVYVLDMNDGEGNVLLSKKAA 99 >UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium perfringens RepID=Q0TNG2_CLOP1 Length = 378 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K I+ E ++VG V +GKVT + GAFV + G EGLVHIS+I D+ + K +D Sbjct: 263 KDVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVEVLPGIEGLVHISEITDENIAKPSDI 322 Query: 666 LQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 L++GQEV VK+L +D + ++ LSIK+A E S Sbjct: 323 LELGQEVKVKILNIDDENKKMSLSIKDAVETSN 355 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 19/135 (14%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-RRI--EEI--------TAEIEV 621 G I L E G T+E V++ + E K + RR+ EEI + I+ Sbjct: 141 GRRIENLEELVGKTLE------VRVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKE 194 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G GKVTR+ FGAFV IGG EGLVH+S ++ RV K + + +G EV V V EVD Sbjct: 195 GEKRKGKVTRLAKFGAFVDIGG-VEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDM 253 Query: 682 -QGRIRLSIKEATEQ 695 + RI LS+K+ + Sbjct: 254 DRERIALSLKDVIKN 268 >UniRef50_C4G9K7 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9K7_9FIRM Length = 294 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 3/93 (3%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG + G V R+ DFGAFV I G +GLVHISQI+ KRVEKV D L++GQ+V VK+ Sbjct: 179 LEVGSIVEGTVARLKDFGAFVNIADGLDGLVHISQISLKRVEKVEDALRVGQKVRVKITG 238 Query: 679 VDRQGRIRLSIK--EATEQSQPAAAPEAPAAEQ 709 + + G++ LS+K E E+ AA EQ Sbjct: 239 M-KDGKVSLSMKAVELLERPSKEAAARKAQDEQ 270 >UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=A3ZTD7_9PLAN Length = 536 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 30/163 (18%) Query: 555 IHTIKINPDKIK---DVIGKGGSV---IRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 +H +I+ D++K D + +G +V + + ETG KI + + ++ Sbjct: 355 VHVSQISWDRVKHPSDALSEGQAVRVKVTKIDPETG-----------KIGLSIRDTLENP 403 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 +++ E E VG + GKVT+I+DFGAFV I G EGLVH+S+++ RV ++ L+ Sbjct: 404 WQKVAE---EFSVGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKA 460 Query: 669 GQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQG 710 G++V VKV+ +D++ RI LSIK A +P APA++ G Sbjct: 461 GEKVEVKVVNIDKEKRRIGLSIK--------ALSP-APASKSG 494 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 33/198 (16%) Query: 507 MDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK 566 +D ++G+ K ++ A+ QA+G F P +I P + Sbjct: 245 VDAVVDGVNKGGLECAVGQARG----------------------FIP---ASQIAPHHVT 279 Query: 567 DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYT 626 ++ G ++ L E E V A EKAK R+ E ++VG++ Sbjct: 280 NMEDYLGQKLQCLVTEANP----ERRNLVLSARAVAEKAKEDSRK--ETMVTLQVGQMRD 333 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRI 685 G VTR+ DFGAFV I GG +GLVH+SQI+ RV+ +D L GQ V VKV ++D + G+I Sbjct: 334 GTVTRLQDFGAFVDI-GGVDGLVHVSQISWDRVKHPSDALSEGQAVRVKVTKIDPETGKI 392 Query: 686 RLSIKEATEQSQPAAAPE 703 LSI++ E A E Sbjct: 393 GLSIRDTLENPWQKVAEE 410 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 16/199 (8%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 RIDGR+K +R + + GVL GSA G+ + L A G + + +R D Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKIL-AAVYGP----REIHPKHLQRPD 71 Query: 375 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 431 + YN P+SV E G P RR + ++ RG L ++ FP T + + E+ Sbjct: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVI-RGALEPALILEMFPRTAIDIFIEV 129 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491 +++ + +A + ASLAL DAG+P++ VA A G + EG+ ++ D+ +ED+ G+ Sbjct: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185 Query: 492 DFKVA--GSRDGISALQMD 508 D VA ++ I+ LQMD Sbjct: 186 DVPVAIMPLKNDITLLQMD 204 >UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes RepID=B3WE79_LACCB Length = 439 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 2/95 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +EI A+I+ G GKV R+ +FGAFV +GG +GLVH+S+I+ V+K +D L++GQE+ Sbjct: 194 KEIFAKIQPGDTVEGKVARLTNFGAFVDLGG-VDGLVHVSEISFDHVDKPSDVLKVGQEI 252 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPA 706 VKVL VD + RI LSIK Q +APA Sbjct: 253 KVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPA 287 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 55/92 (59%), Gaps = 3/92 (3%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 ++I + G V TG V R+ FGAFV + G EGLVHISQI+ + V D L+ GQEV Sbjct: 279 DDIEEKAPAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEV 338 Query: 673 PVKVLEVDRQG-RIRLSIKEATEQSQPAAAPE 703 VKVL VD R+ LSIK Q +PA + E Sbjct: 339 QVKVLSVDPDAHRLALSIKAL--QERPAGSEE 368 >UniRef50_C1ZHL8 Ribosomal protein S1 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHL8_PLALI Length = 557 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 3/85 (3%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV- 679 VG+ TGKVTRI DFGAF+ + G EG++HIS++ KRV++V D L+ GQ+V +VLE+ Sbjct: 433 VGKTVTGKVTRITDFGAFIELEPGVEGMIHISELDYKRVKRVADVLKEGQQVDAQVLEIQ 492 Query: 680 -DRQGRIRLSIKEATEQSQPAAAPE 703 +RQ RI LS+K + + A P+ Sbjct: 493 PERQ-RISLSVKALKPKPEVVAPPK 516 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 56/87 (64%), Gaps = 3/87 (3%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++EVG+ +TG + I D+GAFV + GG +G +H+ +++ R++ TD ++ Q V V VL Sbjct: 345 KVEVGQKFTGTIKTIKDYGAFVDL-GGVDGFLHVGEMSWTRIKHPTDCVREQQTVDVVVL 403 Query: 678 EVDRQG-RIRLSIKEATEQSQPAAAPE 703 +DR+ +I L +++ Q+ +APE Sbjct: 404 SLDREKQKIGLGMRQLV-QNPWNSAPE 429 >UniRef50_Q1WSG8 S1-type RNA-binding domain n=18 Tax=Firmicutes RepID=Q1WSG8_LACS1 Length = 154 Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 40/79 (50%), Positives = 55/79 (69%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG +GKV+ I DFGAFV +G K GLVHIS++++ V+ + + L +G EV VKVL Sbjct: 3 IEVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLS 62 Query: 679 VDRQGRIRLSIKEATEQSQ 697 V G+I LSIK+A ++ Q Sbjct: 63 VSDDGKIGLSIKKAVDKPQ 81 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 19/220 (8%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR D R + ++ G L GS+ G+ + LV G V + M + TD Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILV----GVFGPRDVHPKHMSD-TD 71 Query: 375 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGV-LAVMPDMDKFPYT-VRVVSE 430 T + Y+ P+SVGE +P RREI ++ K + AVM ++KFP T V V E Sbjct: 72 TGILRVRYHMEPFSVGERKNP-APSRREIEISKVIKEALEPAVM--LEKFPRTAVDVFIE 128 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG- 489 + +++G + A++ AS+AL DAG+P++ VA IA G V + V+ D+ +ED G Sbjct: 129 VLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVAD----TVILDVNNEEDQAGQ 184 Query: 490 -DMDFKVAGSRDGISALQMD-IKIEGITKEIMQVALNQAK 527 DM + + I+ LQ+D + K+ +QV ++ K Sbjct: 185 ADMPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCK 224 >UniRef50_A2FJA8 S1 RNA binding domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2FJA8_TRIVA Length = 125 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 50/71 (70%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G + G VT++ FGAFV + GK GLVHIS+IAD V+ + +++ G EV VKVL +D Sbjct: 6 GDIVEGVVTKVAKFGAFVDLKDGKSGLVHISEIADTFVKNINNHISEGDEVKVKVLSIDE 65 Query: 682 QGRIRLSIKEA 692 +G+I LSIK+A Sbjct: 66 RGKIALSIKDA 76 >UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=RS1_LEULA Length = 429 Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 29/154 (18%) Query: 555 IHTIKINPDKIK---DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK----- 606 +H +I+ D++K DV+ KG V VKI A D EK + Sbjct: 257 VHVSEISHDRVKNPADVLTKGDKV------------------DVKILALDTEKGRISLSI 298 Query: 607 HAIRR--IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A +R +E +I G V G V R+ DFGAFV I G EGLVH+SQI++KR+E ++ Sbjct: 299 KATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSE 358 Query: 665 YLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 L+ G +V VKVL++ + RI LS+K E+ + Sbjct: 359 VLKSGDKVQVKVLDIKPAEERISLSMKALEEKPE 392 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 8/96 (8%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +++ VG V G V R+ DFGAFV +GG +GLVH+S+I+ RV+ D L G +V V Sbjct: 224 VFSKLSVGEVVEGTVARLTDFGAFVDLGG-VDGLVHVSEISHDRVKNPADVLTKGDKVDV 282 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 K+L +D +GRI LSIK AT++ P AA+Q Sbjct: 283 KILALDTEKGRISLSIK-ATQR-----GPWDEAADQ 312 >UniRef50_A6LQP2 RNA binding S1 domain protein n=7 Tax=Clostridium RepID=A6LQP2_CLOB8 Length = 384 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 +I G ++ GKV R+ FGAFV + G EGLVHI++I D+ + K +D L+ Q+V VKVL Sbjct: 278 DINEGDIFEGKVIRLTTFGAFVELFDGIEGLVHITEITDEHIAKPSDVLEANQKVKVKVL 337 Query: 678 EVDR-QGRIRLSIKEATEQSQ 697 V+R + RI LSIKEA E ++ Sbjct: 338 SVNREEKRIALSIKEAVETNK 358 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I ++ G G V +IV FGAFV IGG EGL+H+S ++ +RV K D ++ G V V Sbjct: 190 IWDNLKEGEKRNGVVKKIVKFGAFVDIGG-VEGLIHLSDLSWERVNKPEDIVKEGDNVEV 248 Query: 675 KVLEVDRQG-RIRLSIKEATEQ 695 + VDR+ R+ L +K+ T++ Sbjct: 249 FIGNVDRKNERLSLILKDVTKE 270 >UniRef50_UPI000034EEAC 3'''' exoribonuclease family domain 1 protein-related n=1 Tax=Arabidopsis thaliana RepID=UPI000034EEAC Length = 469 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 50/86 (58%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N + K +G + +ETG+M RQA++AV V+ +T VF +V DF PL V+ Sbjct: 18 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVH 77 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGE 88 YQER A GR G FF+REGR + E Sbjct: 78 YQERFSAVGRTSGGFFKREGRTKDHE 103 >UniRef50_B8I046 RNA binding S1 domain protein n=13 Tax=Clostridia RepID=B8I046_CLOCE Length = 144 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/74 (51%), Positives = 53/74 (71%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG++ GKVT I FGAFV + GK GLVHIS++A + V+ V+ +L+ Q V VK+L Sbjct: 3 LEVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQIVKVKILS 62 Query: 679 VDRQGRIRLSIKEA 692 VD G++ LSIK+A Sbjct: 63 VDTNGKVSLSIKKA 76 >UniRef50_C1SJZ4 Transcriptional accessory protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ4_9BACT Length = 706 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G V TGKV+ +VDFGAFV +G +GLVHISQ+AD+ V ++ +++GQ V KVL VDR Sbjct: 636 GDVLTGKVSNVVDFGAFVDVGLKNDGLVHISQLADRFVSDPSEVVKVGQTVKTKVLSVDR 695 Query: 682 Q-GRIRLSIK 690 + GR+ LS+K Sbjct: 696 ERGRLSLSMK 705 >UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL Length = 392 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 15/128 (11%) Query: 594 TVKIAATDGEKAKH--AIRRIEEITAE---------IEVGRVYTGKVTRIVDFGAFVAIG 642 T+KIA D + K + R + E A+ IE+G V G V R+ DFGAFV +G Sbjct: 148 TMKIAEIDQDSNKLILSCRAVHEEAAQHQREATFNNIEIGSVVDGIVRRLTDFGAFVDVG 207 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAA 701 +GLVHISQI+ +RV +D L +G EV KVL+ DR+ GRI LSI++ Q P + Sbjct: 208 A-VDGLVHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDT--QPGPWSG 264 Query: 702 PEAPAAEQ 709 E E Sbjct: 265 VEDQLVEN 272 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG 683 + G V R+V FGAFV I G EGL+HIS+I+ + + ++ L+ GQE+ VK+L VD Sbjct: 274 IVKGVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDSNA 333 Query: 684 RIRLSIKEATEQSQPAAAPEAPAAEQG 710 R R+S+ + + E + +Q Sbjct: 334 R-RVSLTMCDVEQNTSQKSENSSNKQA 359 >UniRef50_D1Y3S9 30S ribosomal protein S1 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S9_9BACT Length = 518 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/91 (52%), Positives = 58/91 (63%), Gaps = 2/91 (2%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G+ T KV R+ DFGAFV I G EGL+HISQ++ RVEK D LQ GQEV +VLEV+ Sbjct: 379 GQDITVKVVRLADFGAFVEIEKGVEGLIHISQLSTHRVEKPGDVLQEGQEVTARVLEVNP 438 Query: 681 RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + RIRLSI A E + AA + QGE Sbjct: 439 AERRIRLSIS-AIEAGEKAAERGKNSPAQGE 468 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E+ +E+ VG V G V+ + FG FV +G +GLVH+S+++ +R K + + G V Sbjct: 200 EKFYSEVNVGDVLDGTVSSVTTFGLFVNVGP-LDGLVHVSEVSWQRSSKSRETYKKGDAV 258 Query: 673 PVKVLEVDRQ-GRIRLSIKEA 692 VKV+ +D++ +I LSI++A Sbjct: 259 KVKVIGIDKENNKISLSIRQA 279 >UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus RepID=A8YV34_LACH4 Length = 403 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 67/96 (69%), Gaps = 6/96 (6%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 +++ +++ VG V GKV+R+ +FGAF+ +GG +GLVHIS+I+ K V+K +D L+ GQ+ Sbjct: 188 FDKVASQLVVGDVIEGKVSRLTNFGAFIDVGG-VDGLVHISEISYKHVDKPSDVLKAGQD 246 Query: 672 VPVKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAPA 706 V VKV+ + D + RI LSIK Q++P+ +A A Sbjct: 247 VKVKVIGIDDDRHRISLSIK----QTEPSPFEQATA 278 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E+ TA++ G V+ G+V + +FGAFV + G +GLVH+S+I++K V+K +D L++ Q Sbjct: 273 FEQATADLNEGDVFEGEVKSLTNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQT 332 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQPA 699 V VKVL +D RI LSIK A + + Sbjct: 333 VKVKVLNIDPSDRRISLSIKAADSNASSS 361 >UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=Q5M0R3_STRT1 Length = 417 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 17/135 (12%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGA 637 + + + D+ VK+ A D E + ++ + + ++ G V GKV R+ DFG Sbjct: 252 SVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGG 311 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQS 696 FV + G +GLVHISQI+ KRVE D L +GQ+V VKVLEV+ R+ LSIK Sbjct: 312 FVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVSLSIK------ 365 Query: 697 QPAAAPEAPAAEQGE 711 A E PA +GE Sbjct: 366 ---ALEERPANAEGE 377 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 2/88 (2%) Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 AI +E+ +++EVG V TGKV R+ FGAF+ + GG +GLVH+++++ +R + Sbjct: 196 EAIEARKEVFSKLEVGSVVTGKVARLTSFGAFIDL-GGVDGLVHVTELSHERNVSPKSVV 254 Query: 667 QMGQEVPVKVLEVDRQ-GRIRLSIKEAT 693 +G E+ VKVL +D + GR+ LS+K T Sbjct: 255 SVGDEIEVKVLAIDEEAGRVSLSLKATT 282 >UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridia RepID=A4J3N5_DESRM Length = 672 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 VG ++ KV R+ FGAFV + G EGLVHIS +AD+ VEK D ++ G+EV VKVL +D Sbjct: 555 VGNIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMD 614 Query: 681 -RQGRIRLSIKEATEQSQPA 699 + R+RLSI+E + + A Sbjct: 615 PSEKRVRLSIREVNGERRSA 634 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 R+ EE+ A ++ G++ G V RI +FGAFV + GG +GL+HIS+++ R+ + +++G Sbjct: 459 RKREELLASLQEGQIVKGIVRRITNFGAFVDL-GGLDGLLHISEMSWHRINHPQEVVKVG 517 Query: 670 QEVPVKVLEVDRQG-RIRLSIKE 691 E+ V VL+VD Q +I L +K+ Sbjct: 518 DELEVMVLKVDTQNEKISLGLKQ 540 >UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7 Tax=Clostridiales RepID=A3DDC0_CLOTH Length = 694 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 8/133 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAI--RRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ V + D EK K ++ R++E+ I + +VG V V R FGAFV Sbjct: 527 LKVGDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFV 586 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G +GLVHISQI+ KR+ KV D L++G +V K++EVD + +I LSIKE P Sbjct: 587 ELEKGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEVMPIDPP 646 Query: 699 AAAPEAPAAEQGE 711 ++ E+ A + E Sbjct: 647 SSKSESKAKDGSE 659 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG+V+ G V + DFGAFV IGG +GL+HIS+++ RV+ ++ L++G EV V VLE Sbjct: 481 MEVGKVFKGTVKSLTDFGAFVDIGGV-DGLIHISELSWTRVKHPSEVLKVGDEVEVTVLE 539 Query: 679 VDRQGR 684 D++ + Sbjct: 540 FDKEKK 545 >UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=A7G2Q4_CLOBH Length = 387 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 VG V G + ++++FGAFV + G EGLVHIS+I D+ + K ++ L +G +V VKVLEV+ Sbjct: 282 VGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVN 341 Query: 681 R-QGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 + R+ LSIKEATE+ + + + E+ Sbjct: 342 SDEKRMSLSIKEATEKPKEDFSKYDDSKEE 371 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +E G+ G V R+ FGAFV I GG +GLVH SQ++ RV ++ + +G +V V VL+ Sbjct: 195 LEKGQKIEGVVRRLEKFGAFVDI-GGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLD 253 Query: 679 VDRQ-GRIRLSIKEA 692 D+ +I LS+K+ Sbjct: 254 FDKDTKKIALSLKDV 268 >UniRef50_A9KQA3 RNA binding S1 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQA3_CLOPH Length = 303 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 5/92 (5%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E+AK +I ++++ G V TG V +++ FGAFV+IG G GLVHISQI KR++ Sbjct: 183 EEAKEKSHKI----SQVQKGIVTTGIVDKLMPFGAFVSIGEGLSGLVHISQICGKRIKSP 238 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 + L+ GQEV VKVL+V + G+I LSIK ++ Sbjct: 239 AEVLKEGQEVKVKVLDV-KDGKISLSIKAVSD 269 >UniRef50_P80870 General stress protein 13 n=12 Tax=Bacillales RepID=GS13_BACSU Length = 130 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 4/98 (4%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + A+ EVG VYTGKVT + +GAFVA+ +GLVHIS++ V+ + ++L +G EV V Sbjct: 1 MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQV 60 Query: 675 KVLEVDRQ-GRIRLSIKEATEQS--QPAAAPEAPAAEQ 709 KVL VD + G+I LSI+ AT+ + + + P P A Q Sbjct: 61 KVLAVDEEKGKISLSIR-ATQAAPEKKESKPRKPKAAQ 97 >UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergistaceae RepID=D1B5G8_THEAS Length = 504 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 1/73 (1%) Query: 623 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-R 681 +V T KV R+ DFGAFV I G EGL+HISQ++ +RVEK +D L+ GQEV K+LEV+ Sbjct: 382 QVVTVKVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPS 441 Query: 682 QGRIRLSIKEATE 694 + RIRLS++ E Sbjct: 442 EKRIRLSLRALEE 454 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 EE A + G + G+V+ I FG FV +G EGLVHI++++ +R K D +Q G +V Sbjct: 202 EEFYANVHEGDILEGEVSSITSFGVFVNLGA-MEGLVHITELSWQRGAKAKDLVQKGDKV 260 Query: 673 PVKVLEVDRQ-GRIRLSIKEATE 694 VKV+ +DR+ R+ LS+K+A E Sbjct: 261 KVKVIGIDRENNRVSLSLKQAQE 283 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 +T+ VG+ G VT + DFGAFV I G EGL+HI ++ RV+ + L+ GQEV V Sbjct: 289 VTSRWTVGQRTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEV 348 Query: 675 KVLEVD-RQGRIRLSIKEATE 694 +LEVD + RI L +K+ + Sbjct: 349 VILEVDGDRRRIGLGLKQLND 369 >UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4N7_NATTJ Length = 705 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-D 680 G + GKV R V+FGAF+ I G EGL HISQ++D V K D + G +V VK+L + D Sbjct: 585 GDIVQGKVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDD 644 Query: 681 RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +Q ++ LSIKEA +S+ E A Q Sbjct: 645 QQKKVSLSIKEAQGKSKKEQEQEEFAKYQ 673 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 2/72 (2%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G + G V R+ DFGAF+ IGG +GL HISQI+ R++ L+ G+ V VKVL +D Sbjct: 500 GDIVDGTVKRLTDFGAFIDIGG-IDGLCHISQISHSRIDHPESELETGENVKVKVLSLDP 558 Query: 682 QG-RIRLSIKEA 692 + RI LSIKEA Sbjct: 559 ENERISLSIKEA 570 >UniRef50_B1YKU0 RNA binding S1 domain protein n=3 Tax=Bacillales RepID=B1YKU0_EXIS2 Length = 130 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 A E +V TGKVT I +FGAFVA+ +GLVHIS+I+ V+ + DY+++G EV VKV Sbjct: 2 ANFEKDQVVTGKVTGIQNFGAFVALDEQTQGLVHISEISHDYVKDINDYVKVGDEVTVKV 61 Query: 677 LEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 L++D +++LSIK E + A + P G Sbjct: 62 LDIDEANKKMKLSIKATQEAPKREARAKGPRKNAG 96 >UniRef50_A5D5X0 Predicted RNA binding protein n=5 Tax=Firmicutes RepID=A5D5X0_PELTS Length = 126 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 53/75 (70%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG V G VT I +FGAF+ + GG+ GLVHIS+IA+ V+ V D+L+ +V VKV+ Sbjct: 3 IEVGSVLEGVVTGITNFGAFIELPGGETGLVHISEIAEVYVKDVHDFLKTNDKVTVKVIS 62 Query: 679 VDRQGRIRLSIKEAT 693 +D +G+I LSIK+ Sbjct: 63 IDPKGKIGLSIKQVN 77 >UniRef50_A9SG12 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SG12_PHYPA Length = 421 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 61/89 (68%), Gaps = 1/89 (1%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K+ A + + +I G V+TGKV + +GAFV IG +GLVHIS++A K V++VT Sbjct: 119 KSSRAAKTLTVQKDQIVAGAVFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVT 178 Query: 664 DYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 D + +GQEV V+VLE++ + GRI L++++ Sbjct: 179 DVVSIGQEVTVRVLELNEKAGRIALTMRD 207 >UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW Length = 687 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 8/106 (7%) Query: 595 VKIAATDGEKAKHAIRRIEEITAEIEV-------GRVYTGKVTRIVDFGAFVAIGGGKEG 647 V I A D EK + ++ R + + + E+ G + G V RI FGAFV I G +G Sbjct: 562 VYILALDREKERVSLSRKKLLKSPWEIVMEKFQEGDIIEGTVVRIAPFGAFVEIEAGVDG 621 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEA 692 LVHISQ+A+ RVEK D +Q+ +++ +K+L +D + RI LS+KEA Sbjct: 622 LVHISQLANHRVEKPEDVVQVNEKIKIKILSIDPEEKRIGLSLKEA 667 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 61/89 (68%), Gaps = 6/89 (6%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 EKAK ++ EIE G+V G++ R+VD+GAF+ +GG EGL+H+S+IA R+++ Sbjct: 496 EKAKQK----KQFWEEIEEGQVRKGRIKRLVDYGAFIDLGG-YEGLLHVSEIAHTRIDQP 550 Query: 663 TDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 +D LQ G+E+ V +L +DR+ R+ LS K Sbjct: 551 SDVLQEGEEIDVYILALDREKERVSLSRK 579 Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G V GKV +++D V +GG EG++ + +++ + ++ + +++G E+ V VL+ D Sbjct: 336 GDVIKGKVIQVLDDEVMVDVGGKSEGIIPLREMSLQDIDSAKELVEVGDEIEVMVLKWDD 395 Query: 682 QGRIRLSIK 690 G I LS K Sbjct: 396 DGTILLSKK 404 >UniRef50_C9LM60 S1 RNA-binding domain protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM60_9FIRM Length = 174 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 54/91 (59%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG + G VT + FG FV I K GLVHIS++A + V V DYL++ +V VK++ Sbjct: 3 LEVGSIVEGTVTGLAKFGVFVEIADKKIGLVHISEVAGEYVSDVNDYLKLHDKVKVKIIS 62 Query: 679 VDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 VD +G+I LSIK+A + P+ E Sbjct: 63 VDEKGKIALSIKQAQAEVCGRRKPDQHTCEH 93 >UniRef50_UPI00016C5864 30S ribosomal protein S1 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5864 Length = 546 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 8/113 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++I + VKI+ D E K + EE T + G TGKV+R+ DFGAFV Sbjct: 384 VKIGQEVEVKISKIDFEARKIGLSMRALTTSPFEEFTKTTQAGARVTGKVSRLADFGAFV 443 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKE 691 + G EGL+H+S+++ +RV +V+D ++ GQ V V++L D RI LS+K+ Sbjct: 444 ELAPGLEGLIHVSELSTQRVRRVSDVIEPGQNVIVEILSTDPVTKRIALSLKK 496 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 + EE +E +V G V + FGAFV +GG +GL+ +S+ + +RV + + +++GQ Sbjct: 330 KAEEFWRTVEKDQVRKGIVRSVKPFGAFVDLGGA-DGLIPVSEFSWQRVNDLNEVVKIGQ 388 Query: 671 EVPVKVLEVDRQGR-IRLSIKEAT 693 EV VK+ ++D + R I LS++ T Sbjct: 389 EVEVKISKIDFEARKIGLSMRALT 412 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 10/196 (5%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR + +R + + GVL GSAL G T+ V A + R+A + +R Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTR--VIAAVYGPREAHPRHVALPDRA- 81 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITE 433 Y+ P+S E +P RRE+ ++ + + AV+ + +P T + V E+ + Sbjct: 82 IIRCRYHMAPFSTAERK-TPAPTRREVELSKVIREALEAVVIS-ELYPRTAIDVYMEVLQ 139 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS-DILGDEDHLGDMD 492 S+G + A++ ASLAL DAG+ ++ VAG+A+G V D +VL D + D DM Sbjct: 140 SDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV---DGVLVLDIDEIEDNYAEADMP 196 Query: 493 FKVAGSRDGISALQMD 508 +A S D + LQ++ Sbjct: 197 VAMAPSLDKVLLLQLN 212 >UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N749_9BACT Length = 607 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 5/93 (5%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG V GKVT+I FGAFV + +GL+HISQ++ RVEKV D L +G EV +V++V Sbjct: 490 KVGDVVKGKVTKIAAFGAFVELTNKIDGLIHISQLSRDRVEKVKDVLNVGDEVEARVIKV 549 Query: 680 DR-QGRIRLSIKEATEQSQP----AAAPEAPAA 707 D + RI LSIK E P AA E AA Sbjct: 550 DTDERRIGLSIKAVGENFSPEDLKAAEEEYTAA 582 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 +++ ++ G GKV I+ +GAFV I G EGL+H+S+++ KRV K +D L +G+E Sbjct: 309 DDVVSKYPKGSKINGKVVNIMPYGAFVEIETGVEGLIHVSEMSWTKRVSKASDVLSIGEE 368 Query: 672 VPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAPAAEQ 709 V VL++DR R I L +++ A + P + Sbjct: 369 VEAVVLDIDRDSRKISLGLRQKERNPWEVLAEKYPVGRR 407 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ E++V + G V I DFGAF+ +GG +GL+HI+ I+ R+ ++ L++G+E+ Sbjct: 225 KLLGEMKVDELRKGVVKNITDFGAFIDLGG-VDGLLHITDISWGRISHPSEVLKVGEEIE 283 Query: 674 VKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 V ++ +D++ R+ L +K+ T + P + Sbjct: 284 VVIIGIDKEKERVSLGLKQKTRNPWDDVVSKYPKGSK 320 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 4/82 (4%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEV 679 VGR TGKV + +GAFV I +G++H+S ++ +++ + L+ GQEV +L++ Sbjct: 404 VGRRITGKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKINNPNEVLKPGQEVEAIILDI 463 Query: 680 D-RQGRIRLSIKEATEQSQPAA 700 + Q RI L +K+A ++ P A Sbjct: 464 NPEQQRISLGLKQA--ETDPWA 483 >UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWY2_HALOH Length = 678 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G V +G +T+IVDFGAF+ I G EGL+HISQ++ + V+ + + +G+E+ +++ +D Sbjct: 564 GEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEIINIDP 623 Query: 681 RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 Q R+ LSIK EQ + EAP E Sbjct: 624 EQKRVGLSIKALEEQPETPKKVEAPKKE 651 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 2/75 (2%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E++ G+V GKVT+IVDFGAFV + GG EGL+HIS+++ R+E ++ L+ GQE+ VKVL Sbjct: 475 ELQEGQVVKGKVTKIVDFGAFVDL-GGIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVL 533 Query: 678 EVDR-QGRIRLSIKE 691 V++ + RI L +K+ Sbjct: 534 AVNKEEERISLGLKQ 548 >UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 n=44 Tax=Eukaryota RepID=MOG5_CAEEL Length = 1200 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 4/80 (5%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGG---GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E+G++Y G+V I FGAF+ + G +EGLVHISQI ++RV+ V D L+ G+ V VKV Sbjct: 232 EIGKIYDGRVNSIQSFGAFITLEGFRQKQEGLVHISQIRNERVQTVADVLKRGENVKVKV 291 Query: 677 LEVDRQGRIRLSIKEATEQS 696 +++ G+I LS+KE + S Sbjct: 292 NKIE-NGKISLSMKEVDQNS 310 >UniRef50_D1BMA5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Veillonella RepID=D1BMA5_VEIPT Length = 632 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 + VG V GKV R+V +GAFVA+ +GL+HISQI +R KV DYL GQEV VK++ Sbjct: 547 LHVGDVINGKVVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEVKIIS 606 Query: 679 VDR-QGRIRLSIKEATEQSQPAAAPE 703 +++ + ++ L++ E E + A E Sbjct: 607 LNKDEKKLGLALTELMESKETAEDAE 632 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 2/81 (2%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 ++ E I VG Y G V +I+ +GAFV IGG EGL+HIS I+ ++++KV D L +GQ Sbjct: 454 KLAEALKNINVGENYKGIVRKIMPYGAFVDIGG-IEGLLHISDISWQKIKKVEDVLSVGQ 512 Query: 671 EVPVKVLEVDRQ-GRIRLSIK 690 E+ VK+ D + ++ LS+K Sbjct: 513 EIEVKLQSFDAESNKLSLSLK 533 >UniRef50_A5V0B5 RNA binding S1 domain protein n=3 Tax=Chloroflexaceae RepID=A5V0B5_ROSS1 Length = 514 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E A + VG G VT + FG FV IG GK+GLVH+S++A+ RVEK D +Q+GQ Sbjct: 233 EKLAALRVGDNVEGTVTGMAPFGVFVDIGVGKDGLVHVSELAEGRVEKAEDVVQVGQTYT 292 Query: 674 VKVLEVDRQG-RIRLSIKEA 692 KVLEVD G RI LS++ A Sbjct: 293 FKVLEVDAAGARISLSLRRA 312 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/74 (43%), Positives = 53/74 (71%), Gaps = 1/74 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++E G++ G ++ + FGAFV IG G++GLVHIS++++ V +V D +++G V V+VL Sbjct: 320 QLEKGQILEGTISGLAPFGAFVDIGVGRDGLVHISELSNTHVARVEDVVKVGDRVQVRVL 379 Query: 678 EVDRQG-RIRLSIK 690 +VD Q RI LS++ Sbjct: 380 DVDPQSKRISLSLR 393 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 5/90 (5%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 RR++++ +E+ G+VT I +G FV IG G++GLVHIS+++D R+E +D +++G Sbjct: 134 RRVKDLAPGMEL----EGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIG 189 Query: 670 QEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 V V+V V+ G RI L+++ ++P Sbjct: 190 DTVKVRVKSVEPDGRRISLTMRTKERSAEP 219 >UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridiales RepID=B1I3Y7_DESAP Length = 677 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E++ VG V + +V R+V FGAFV + G EGLVHIS +AD V K D + GQ++ Sbjct: 570 EQVVENYPVGSVVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQI 629 Query: 673 PVKVLEVDRQG-RIRLSIKEATE 694 VKVL VD + RIRLS++E + Sbjct: 630 NVKVLSVDDENKRIRLSLREVVK 652 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 2/83 (2%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 R+ +E + G V G V R+ FGAFV IGG +GL+HIS+I+ R+ ++ L++G Sbjct: 482 RKRKETLETTQEGDVVKGVVRRLTQFGAFVDIGG-LDGLLHISEISWHRINHPSEVLKVG 540 Query: 670 QEVPVKVLEVDRQG-RIRLSIKE 691 E+ V+VL +DR+ ++ LS+K+ Sbjct: 541 DELEVQVLRIDRENEKVSLSLKQ 563 >UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphilus RepID=A6TRF8_ALKMQ Length = 383 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I + + G + GKV R+VDFGAFV + G +GLVHISQI++ + K ++ L +GQ V V Sbjct: 274 IADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAKPSEELHVGQNVNV 333 Query: 675 KVLEVDRQG-RIRLSIKEATEQS 696 KVL+++ G RI LS+ A E S Sbjct: 334 KVLDINIDGKRISLSMTAAQEDS 356 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 17/115 (14%) Query: 596 KIAATDGEKAKHAIRRIE-----------EITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 K+ D +K K + R E ++ A++E G G+V R+ +FGAFV IGG Sbjct: 159 KVIEIDRQKNKAVLSRKEVLQQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDIGG- 217 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 +GLVHIS+++ RV+ ++ + + +V VKV++ D G++ LSIK Q+QP Sbjct: 218 IDGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIK----QTQP 268 >UniRef50_D2C8C2 RNA binding S1 domain protein n=9 Tax=Thermotogaceae RepID=D2C8C2_THENR Length = 124 Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 34/78 (43%), Positives = 53/78 (67%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 ++VG + GKV++IV +GAFV I GG+ G +HIS+I+ V+++ DYL GQE+ KV+ Sbjct: 1 MKVGELVKGKVSKIVRYGAFVDIEGGERGFIHISKISKNYVKRIEDYLHEGQEISAKVIG 60 Query: 679 VDRQGRIRLSIKEATEQS 696 R G LS+K+ E++ Sbjct: 61 RARNGGWELSLKDLEEET 78 >UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDV0_9FIRM Length = 678 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 1/80 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E+ + G V GKVTRIVDFGAFV + G EGLVHISQ+A+ V++ ++ +Q G V Sbjct: 558 EVGQKFSAGDVVEGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVK 617 Query: 674 VKVLEVDRQG-RIRLSIKEA 692 VK+L+++ G R+ LS+++A Sbjct: 618 VKILDINTDGKRVSLSMRDA 637 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 59/82 (71%), Gaps = 4/82 (4%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +++ AE+E G++ G V R+ +FGAFV +GG +GLVHIS+I+ R++ + L +G E+ Sbjct: 472 DKVLAELEPGQIIKGTVKRLTNFGAFVDVGG-IDGLVHISEISWHRIDNPGEVLSVGDEI 530 Query: 673 PVKVLEV--DRQGRIRLSIKEA 692 VKV+EV +R+ RI LS+++A Sbjct: 531 EVKVIEVIPERE-RIGLSLRQA 551 >UniRef50_C5RED5 RNA binding S1 domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RED5_CLOCL Length = 308 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E I + VG + KV +++ FGA V + G EGLVH SQI+D RV DYL+ GQ++ Sbjct: 193 ESIDDKYRVGDIVETKVVKLLKFGAIVKLEEGVEGLVHNSQISDDRVMNPGDYLKEGQDI 252 Query: 673 PVKVLEVDR-QGRIRLSIKEATEQSQPA 699 VK+L +D+ Q +I LS KEA + Q Sbjct: 253 KVKILTIDKVQKKISLSYKEAVAKEQST 280 >UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=8 Tax=Bacteria RepID=D1PP74_9FIRM Length = 639 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 1/83 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E+ VG +T V I FGAFV I G +GLVHIS+I+++RV KV+D L++G EV VK+ Sbjct: 556 EVPVGTEFTAPVVSITKFGAFVRIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVKLT 615 Query: 678 EVD-RQGRIRLSIKEATEQSQPA 699 VD + RI LS+K + + A Sbjct: 616 NVDFDRKRISLSMKACLNEDESA 638 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 15/149 (10%) Query: 551 FAPRIH-TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 F PR T++ + D K V G V +TE G I G++ + KAK Sbjct: 415 FVPRSQATMRRDEDYTKLV---GQHVKLVITECAGRKIV----GSINKVTAEANKAKR-- 465 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 EE A +EVG+ Y G V + +GAFV I GG +GL HIS+++ ++ ++ + +G Sbjct: 466 ---EEFWANVEVGKKYQGVVKSLTSYGAFVDI-GGVDGLCHISELSWSNIKHPSEVVNVG 521 Query: 670 QEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 E+ V V D + + ++S+ E+ P Sbjct: 522 DEIEVYVKSYDPENQ-KVSLGYKKEEDNP 549 >UniRef50_D2R2F1 RNA binding S1 domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2F1_9PLAN Length = 502 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 19/158 (12%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE--DDGTVKIAATDGEKAKHAIRRI 612 IH +++ D+IK LTE + IE D T KI + + +H I Sbjct: 320 IHISQMSWDRIK-------HPSEILTEGQKVRVRIEKIDPETGKIGLSLRNQQEHPWTGI 372 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 ++ + VG + G V+R+ FGAFV + G EGL+HIS++A RV V + ++ GQEV Sbjct: 373 DQ---KFPVGSIVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQNVVKEGQEV 429 Query: 673 PVKVLEVDRQG-RIRLSIKEA------TEQSQPAAAPE 703 VK+L V + RI LS+K +E+++ AAPE Sbjct: 430 EVKILTVSAEDQRISLSLKATLQAPAKSEKTKAEAAPE 467 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 61/94 (64%), Gaps = 4/94 (4%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E+ K + ++ E+ A I +G + G V +I DFGAFV +GG +GL+HISQ++ R++ Sbjct: 277 EREKESAKK--ELMASIAIGDMREGVVRKIQDFGAFVDMGG-IDGLIHISQMSWDRIKHP 333 Query: 663 TDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 ++ L GQ+V V++ ++D + G+I LS++ E Sbjct: 334 SEILTEGQKVRVRIEKIDPETGKIGLSLRNQQEH 367 >UniRef50_D1B691 RNA binding S1 domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B691_THEAS Length = 140 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 52/75 (69%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 TA + VG V TG V I +GAFV + G++ +VHIS+++ V+KV D L++ Q+V K Sbjct: 9 TAGVNVGDVVTGTVEHIAPYGAFVRLENGQKAMVHISELSHSYVKKVEDVLELQQKVTAK 68 Query: 676 VLEVDRQGRIRLSIK 690 V+++D +GRI LSIK Sbjct: 69 VIKIDERGRIDLSIK 83 >UniRef50_UPI00016C0B56 30S ribosomal protein S1 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B56 Length = 373 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E A +E G++ G VTR FGAFV I G EGL+HISQI+ R K D L GQEV Sbjct: 279 ENTVANLEEGQLVKGIVTRFALFGAFVRIADGVEGLIHISQISTPRPTKPQDVLTSGQEV 338 Query: 673 PVKVLEVDR-QGRIRLSIKEATEQSQP 698 VK++++D+ + RI LS+ A ++ P Sbjct: 339 EVKIIKIDKAEKRISLSLIAALDEIDP 365 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 59/86 (68%), Gaps = 5/86 (5%) Query: 610 RRIEEITA---EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 RR+E+ A +++ G Y GK+T+++++GAFV + G EGL+H S ++ R++ D + Sbjct: 188 RRLEKRQARLDQLQEGEKYIGKITKLMNYGAFVDLDG-IEGLIHNSDLSWSRIKHPKDIV 246 Query: 667 QMGQEVPVKVLEVDRQ-GRIRLSIKE 691 Q GQEV V ++ +DR+ G+I L++K+ Sbjct: 247 QEGQEVEVSIISIDRENGKIALALKD 272 >UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4 Tax=Veillonellaceae RepID=A1HTW2_9FIRM Length = 655 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G GKVT++ FGAFV + G EGLVH+S++AD+RV + +++GQ V VK+L +D+ Sbjct: 548 GMTVAGKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDK 607 Query: 682 QG-RIRLSIKEATEQSQPA 699 + RI LSI +A + ++ A Sbjct: 608 ENKRISLSIAQAQQDAERA 626 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 RR EE+ + + G++ TG V+RI DFG FV + GG +GL+HIS ++ RV+ T+ + +G Sbjct: 451 RRAEELFSRLAEGQIVTGTVSRIADFGVFVDL-GGVDGLIHISDLSWHRVKNPTEVVNIG 509 Query: 670 QEVPVKVLEVD-RQGRIRLSIK 690 EV V V +VD + RI LS+K Sbjct: 510 DEVQVFVQKVDPKAKRISLSLK 531 >UniRef50_A9B5U0 RNA binding S1 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5U0_HERA2 Length = 501 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E++ G + G V I FG FV IG GK+GLVHIS++++ RVEK D + +GQ +V Sbjct: 196 GELKPGDLVDGTVNGIAPFGVFVDIGVGKDGLVHISELSENRVEKAEDAVTVGQSYTFRV 255 Query: 677 LEVDRQG-RIRLSIKEATEQSQPAAAPEAP 705 LEVD RI LS++ A E Q P+AP Sbjct: 256 LEVDTGAQRISLSLRRAKEDFQ--ERPKAP 283 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 23/145 (15%) Query: 564 KIKDVIGKGGSVIRALTEETGTTIEI--EDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 621 ++K+ +G GG TEE G T E ++DGT RR+ ++ A +E+ Sbjct: 64 EVKERVGLGGD--DEATEEAGATFEPSGDEDGTTP-------------RRLADLHAGMEL 108 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 GKVT +G FV IG G++GLVHIS+++D+R+E TD +Q+G V V+V VD Sbjct: 109 ----DGKVTSTALYGVFVDIGVGRDGLVHISEMSDQRIESPTDVVQIGDIVKVRVKSVDP 164 Query: 682 QGRIRLSIKEATEQSQ-PAAAPEAP 705 R R+S+ + +S+ AP+ P Sbjct: 165 DAR-RISLTMRSPRSEGRRRAPKRP 188 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 6/117 (5%) Query: 594 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 +++ A D ++ A RR E I G V GKV+ I FGAFV +G G++GLVHIS+ Sbjct: 268 SLRRAKEDFQERPKAPRRREVNLDVIAPGTVLDGKVSGIAPFGAFVDLGVGRDGLVHISE 327 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 +++ RV KV D +++G V V+VLEVD + R+S+ E+ AP P + G Sbjct: 328 LSEGRVGKVDDVVKVGDPVKVRVLEVDPDSK-RISLTMRVEE-----APTTPISTSG 378 >UniRef50_B8HZ35 RNA binding S1 domain protein n=18 Tax=Bacteria RepID=B8HZ35_CYAP4 Length = 763 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 5/99 (5%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 +++ VG G VT + +FGAFV IG ++GLVH+SQ+AD+ V +++GQ V V+V Sbjct: 641 SDLSVGMQLEGMVTNVANFGAFVDIGVHQDGLVHVSQLADRFVSDPKQIVKVGQVVNVRV 700 Query: 677 LEVDRQ-GRIRLSIKEATEQSQ---PAAAPEAPAAEQGE 711 LEVD + RI LS++ T + Q P ++P AP +++ + Sbjct: 701 LEVDEKLKRISLSMRSDTPERQGQSPVSSP-APKSQRSQ 738 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 15/185 (8%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA--RDAQVLDELMGER 372 R+DGR + +R + ++TGV+ R GSA G + +V + A + AQ +D + Sbjct: 14 RLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAI--- 70 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 431 YN YSV E G P RR + ++ + + + ++K P + V ++ Sbjct: 71 ---VKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIV-LEKLPRAEIDVFIQV 125 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491 E++ + +AS+ +S+A+ DAGVP++ V G G + D +VL D+ DED+ G Sbjct: 126 LEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAG---KADGKIVL-DLSKDEDNFGQA 181 Query: 492 DFKVA 496 D +A Sbjct: 182 DIPMA 186 >UniRef50_C5NX49 30S ribosomal protein S1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX49_9BACL Length = 402 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 6/89 (6%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 EKAK ++ E+ I G V GKV+RI DFGAFV IG +GL+HIS+I+ RVEKV Sbjct: 193 EKAK----KLAEVYGNINEGDVIEGKVSRITDFGAFVNIGE-VDGLLHISEISHARVEKV 247 Query: 663 TDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 D L +G + V V+ VD++ ++ LS K Sbjct: 248 ADVLSVGDTIKVAVIAVDKENEKVSLSAK 276 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKV 629 A E+ + + D V + A D E K ++ + E A I+ G G V Sbjct: 241 HARVEKVADVLSVGDTIKVAVIAVDKENEKVSLSAKTLLPTQWEVARATIKAGDALEGVV 300 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLS 688 FGAFV + EGLVHISQI+ +RV V D L+ G +V VKVLE D + R+ LS Sbjct: 301 RNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDFENERLSLS 360 Query: 689 IKE 691 IKE Sbjct: 361 IKE 363 >UniRef50_UPI00016BFB5D hypothetical protein Epulo_08978 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB5D Length = 131 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 ++ +IEVG++ G VT I FGAF+++ GLVHIS I +E + D +++G V V Sbjct: 1 MSEKIEVGQILEGTVTGIKPFGAFISLPNSYNGLVHISHITHGYLENIADAIKIGDVVKV 60 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 KVL VD +I LSIKEA E+ + P+ Sbjct: 61 KVLTVDLTNNKISLSIKEALEKPKQEERPK 90 >UniRef50_A4IQA6 30S ribosomal protein S1 n=10 Tax=Bacillaceae RepID=A4IQA6_GEOTN Length = 387 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 2/79 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + + +E G+V G V RI DFG FV +GG +GLVHISQ++ RV ++ ++ G V V Sbjct: 186 LLSRLEAGQVLDGVVRRIADFGVFVDVGGF-DGLVHISQLSHTRVAHPSEVVKEGDAVKV 244 Query: 675 KVLEVD-RQGRIRLSIKEA 692 KVL VD QGR+ LSIKEA Sbjct: 245 KVLAVDPEQGRLSLSIKEA 263 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 8/115 (6%) Query: 595 VKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 VK+ A D E+ + ++ E I+ +++ V TG V R+ FGAFV I G EG Sbjct: 244 VKVLAVDPEQGRLSLSIKEALPGPWEGISEKVKPSDVVTGTVKRLASFGAFVEIFPGVEG 303 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAA 701 LVH+SQIA++R+ + L+ G EV KVL+V+ + RI LSI+ E+ A A Sbjct: 304 LVHVSQIANRRIGSPHEVLKEGDEVKAKVLDVNEAEHRISLSIRALLEEETAAPA 358 >UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ72_HALO1 Length = 608 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 8/115 (6%) Query: 595 VKIAATDGEKAKHA--IRRI-----EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 + I DGEK K + I+++ + I + G++ KV +++DFGAFV I G EG Sbjct: 431 LNIDTADGEKPKISLGIKQLNTDPWDRIPFDFPPGKIVDAKVLKVLDFGAFVEIEKGIEG 490 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAA 701 LVH+S+I+D+ V+ L GQE+ V++L VD Q R I LS+K A ++ A A Sbjct: 491 LVHVSEISDEHVDDPRKVLTPGQELKVQILSVDPQERKIGLSVKSANRATEMAEA 545 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 E++ + G V GKV I DFG FV I G +GLVH+S ++ +RV+ ++ Q G E Sbjct: 366 EQLNEKYPPGTVVKGKVRNIADFGIFVEIEEGIDGLVHVSDMSWTQRVKHPSEMFQKGDE 425 Query: 672 VPVKVLEVD----RQGRIRLSIKE 691 V +L +D + +I L IK+ Sbjct: 426 VEAVLLNIDTADGEKPKISLGIKQ 449 Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 4/99 (4%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 EK + A++ E ++ G+ G V + ++GAF+ +GG +GL+HI+ ++ RV Sbjct: 186 EKERAALK--ESTLERLKEGQEVEGIVKNLTEYGAFIDLGG-IDGLLHITDMSWGRVNHP 242 Query: 663 TDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAA 700 ++ Q+G V VKVL+ + R+ L +K+ +E A Sbjct: 243 SELFQVGDHVRVKVLKFNADTERVSLGLKQISEDPWSKA 281 >UniRef50_C1TKG4 Predicted RNA-binding protein with ribosomal protein S1 domain n=3 Tax=Synergistaceae RepID=C1TKG4_9BACT Length = 160 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + + G V TG V +++ +GAFV + G+ +VHISQ++ ++ V+D + QE+ K Sbjct: 10 NSSVSPGDVVTGVVEQVMPYGAFVRLSTGQRAMVHISQLSHNFIKNVSDVVSAEQEITAK 69 Query: 676 VLEVDRQGRIRLSIKEATEQSQPAAAPEAP 705 V+++D +GRI LSIK +E P A P P Sbjct: 70 VIKIDDKGRIDLSIKAMSE---PPARPSRP 96 >UniRef50_A4ISC1 Polyribonucleotide nucleotidyltransferase, general stress protein 13 n=5 Tax=Geobacillus RepID=A4ISC1_GEOTN Length = 124 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G + GKVT I +GAFV + GG +GL+HIS+I+ + V+ V DY+ +G EV VKVL+VD Sbjct: 10 GAIVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLDVDY 69 Query: 681 RQGRIRLSIK 690 + GR LS+K Sbjct: 70 KAGRASLSLK 79 >UniRef50_B2UME1 Ribosomal protein S1 n=6 Tax=Chlamydiae/Verrucomicrobia group RepID=B2UME1_AKKM8 Length = 562 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E I +VG + TG+V +I FGAFV + G +GL+HISQ+++ VE+V D +++G E+ Sbjct: 436 ESINDRFKVGDMVTGQVAKIASFGAFVNLDGDIDGLIHISQLSEDHVERVKDVIKVGDEI 495 Query: 673 PVKVLEVDR-QGRIRLSIK 690 +V++VD + RI LSIK Sbjct: 496 TARVIKVDSIERRIGLSIK 514 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 19/131 (14%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE-----------IEVGRVY 625 R L E G E KI + ++ + R E I AE ++ G Sbjct: 136 RDLNEYVGKVYEF------KIVKVNDDRKNIVLSRREVIEAERADQRQRFLETVKEGDKV 189 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-R 684 G V I DFGAFV + G +GL+HI+ ++ RV ++ L +GQ + V +LEVDR+ R Sbjct: 190 EGIVKNITDFGAFVDLRG-MDGLLHITDMSWGRVNHPSEMLHIGQSLEVVILEVDREKER 248 Query: 685 IRLSIKEATEQ 695 + L +K+ T+ Sbjct: 249 VSLGLKQMTDN 259 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 52/80 (65%), Gaps = 4/80 (5%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGR 684 G+VT+++ +GAFV + G EGLVH+S+++ KR+ + +D L++ QE+ VL + ++ + Sbjct: 276 GRVTKLLPYGAFVELEKGVEGLVHVSELSWVKRITRPSDVLKLDQEIEAVVLSISVKEQK 335 Query: 685 IRLSIKEATEQSQPAAAPEA 704 I L +++ + P A E+ Sbjct: 336 ISLGVRQL--EDNPWADIES 353 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 55/96 (57%), Gaps = 7/96 (7%) Query: 603 EKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-D 656 +K +R++E+ I + +G V G+V + +GAFV + G +G++H+S ++ Sbjct: 334 QKISLGVRQLEDNPWADIESRFPIGTVIKGQVRNLTPYGAFVGLEEGIDGMIHVSDMSWT 393 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKE 691 +++ ++ L+ G EV VLE+ ++ R+ L IK+ Sbjct: 394 RKINHPSEVLKKGDEVEAIVLEIKKEDQRVSLGIKQ 429 >UniRef50_Q0WVD2 Elongation factor Ts (Fragment) n=5 Tax=cellular organisms RepID=Q0WVD2_ARATH Length = 631 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 11/131 (8%) Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR------RIEEITA----EIEV 621 G V+ A+ E+ T + ED TV +D R R E+ A E+ Sbjct: 76 GTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSEMPAVKNEELVP 135 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G +TGKV I FGAFV G +GLVH+SQ++D V+ V+ + +GQEV V+++E D Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEADI 195 Query: 681 RQGRIRLSIKE 691 RI L+++E Sbjct: 196 ESKRISLTMRE 206 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT---DYL 666 R+ E ++ G++ G V + GAF+ IG G+EG + ++ AD + + L Sbjct: 236 RKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSL 295 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIKE 691 Q GQEV V+VL + R GR+ L++KE Sbjct: 296 QAGQEVKVRVLRIAR-GRVTLTMKE 319 >UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2 Tax=Desulfitobacterium hafniense RepID=B8G2Q3_DESHD Length = 661 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 6/94 (6%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + A ++ G V +G V R+ FGAFV IGG +GL+H+S IA R++ ++Y+ +G EV Sbjct: 462 EHLLATLQEGDVVSGVVKRLAQFGAFVDIGG-VDGLLHVSDIAYTRIKHPSEYVNVGDEV 520 Query: 673 PVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAP 705 V++L+VD+ QG+I L +K Q +P+ AP Sbjct: 521 EVQILKVDKEQGKISLGLK----QLKPSPWESAP 550 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 8/93 (8%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 +G + TGKV RI FGAFV + G + L+HISQ+++KRV KV D +++G V KV+E Sbjct: 555 LGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECK 614 Query: 681 -RQGRIRLSIKEATEQSQP-------AAAPEAP 705 + RI LSI+EA ++Q A+ PEAP Sbjct: 615 PEEKRISLSIREAAAEAQATEDAELLASQPEAP 647 >UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2Y7_9BACT Length = 318 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G V GK+ R +FGAFV + EGL HIS+++D+RVEK D +Q+GQE+ K+L +D Sbjct: 142 GDVVRGKIARFANFGAFVELDDNLEGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDV 201 Query: 682 QG-RIRLSIKEATEQSQP 698 + +I LS + + +P Sbjct: 202 ESKKIGLSARSVGKDDEP 219 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLE 678 +VG G+V + DFGAF+ I G +GLVH+S I+ +R++ ++ L+ GQE+ + Sbjct: 53 QVGTRVHGRVRNLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITS 112 Query: 679 VDRQG-RIRLSIKE 691 +D + R+ LSIK+ Sbjct: 113 IDAENRRLSLSIKD 126 >UniRef50_C2BIJ8 S1 domain RNA-binding protein n=2 Tax=Clostridiales Family XI. Incertae Sedis RepID=C2BIJ8_9FIRM Length = 697 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 1/74 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 +++VG V GKV I DFGAFV IG G +GLVH+S+I+DK V+ D L Q V V+++ Sbjct: 621 DLKVGMVLKGKVRNITDFGAFVDIGVGIDGLVHVSEISDKFVKNPHDELTNSQVVSVRII 680 Query: 678 EVDRQG-RIRLSIK 690 E+D++ RI LS++ Sbjct: 681 EIDKKKERIGLSMR 694 >UniRef50_A7GUA8 RNA binding S1 domain protein n=7 Tax=Bacillales RepID=A7GUA8_BACCN Length = 133 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ + G + GKVT I D+GAFVA+ +GLVHIS+I + V+ V DYL++G V Sbjct: 19 HMSEQYTTGVIVKGKVTGIQDYGAFVALDDETQGLVHISEITNGYVKDVHDYLKIGDTVE 78 Query: 674 VKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPA 706 VKVL VD + ++ LS+K A + P A Sbjct: 79 VKVLSVDEEHKKMSLSLKAAKRKQGKVLVPNPSA 112 >UniRef50_A4XIT7 RNA binding S1 domain protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XIT7_CALS8 Length = 141 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/76 (47%), Positives = 49/76 (64%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 ++ G V GKV I FGAFV + G GLVHIS+IA++ V+ + YL+ Q V VKVL+ Sbjct: 22 VKKGGVVEGKVKSITKFGAFVELPTGVVGLVHISEIANEYVDDIRKYLKEQQTVKVKVLD 81 Query: 679 VDRQGRIRLSIKEATE 694 + G+I LSIK+ E Sbjct: 82 IKENGKISLSIKKVNE 97 >UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2R4_9DELT Length = 507 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 8/94 (8%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E+A+ +R +E + G V VTR FGAFV + G EGLVH+S+++ R EK Sbjct: 188 ERAESELRFLESVNP----GDVIPAVVTRFAAFGAFVEVAPGLEGLVHLSELSWSRAEKA 243 Query: 663 TDYLQMGQEVPVKVLEVDR----QGRIRLSIKEA 692 D + +GQ V VKVL DR + RI LSIK+A Sbjct: 244 EDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQA 277 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 2/67 (2%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGR 684 GKVTR+ DFGAFV I G EGL+H+S+++ +R+ K +D + G+ V V V +VD + R Sbjct: 297 GKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKRR 356 Query: 685 IRLSIKE 691 I LS+KE Sbjct: 357 ISLSLKE 363 >UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSI0_9FIRM Length = 725 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 4/82 (4%) Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 I+DFGAFV + G +GL+H+SQI + +EK D L++GQEV VKV+E+D++ +I LSIK Sbjct: 560 ILDFGAFVRLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSIK 619 Query: 691 ---EATEQSQPAAAPEAPAAEQ 709 E E + E P ++ Sbjct: 620 ALLEPIEDDENKEKTEKPKVKK 641 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 6/92 (6%) Query: 609 IRRIEEITAEI----EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 +R +EE ++I +G V G V R+ +FGAFV IGG +GLVHIS+++ RV+ ++ Sbjct: 448 MRELEEKRSQIFESLHIGDVIEGTVQRLTNFGAFVDIGGI-DGLVHISELSWNRVKHPSE 506 Query: 665 YLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 + G +V V+VL +D + RI L +K+ TE+ Sbjct: 507 VVSAGDKVKVQVLSLDEEKDRIALGLKQTTEK 538 >UniRef50_A0RK95 General stress protein 13 n=90 Tax=Bacillales RepID=A0RK95_BACAH Length = 119 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ + G V TGKVT I D+GAFVA+ +GLVHIS+I + V+ + D+L++G V Sbjct: 5 HMSEQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVE 64 Query: 674 VKVLEVDRQGR-IRLSIKEA 692 VKVL +D + R + LS+K A Sbjct: 65 VKVLSIDEEHRKMSLSLKAA 84 >UniRef50_C7H4V6 General stress protein 13 (Fragment) n=3 Tax=Faecalibacterium prausnitzii RepID=C7H4V6_9FIRM Length = 108 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 5/92 (5%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG V G+VT + FGAFVA+ GK G+VHIS+++++ V+ + L G V V+V+ Sbjct: 3 IEVGNVLEGRVTGVKPFGAFVALPEGKSGMVHISEVSNEYVQDINTVLHDGDAVKVQVIN 62 Query: 679 VDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + G+I LSIK + AP P +++G Sbjct: 63 IAPDGKIALSIKRLL-----SPAPRQPRSDRG 89 >UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3232B Length = 529 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 VG G+VT++V FGAFV I G EGLVHIS++A VE + +Q EV VK+LE+D Sbjct: 298 VGDELEGRVTKVVTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPNDEVKVKILEID 357 Query: 681 RQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + R+ LSIK Q P + E +G Sbjct: 358 SERRRLSLSIKRVEGQILPVRSLEGEDGAEG 388 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I ++ G + G ++ IVDFGAFV + G +GL+HIS+++ V ++ L +G V V Sbjct: 207 ILDRLQPGMIVEGTISNIVDFGAFVDLDG-IDGLIHISELSWSHVNHPSEILSIGDTVSV 265 Query: 675 KVLEVDR-QGRIRLSIKEATE 694 KVL++DR + RI L +K+ E Sbjct: 266 KVLDIDRDRQRISLGLKQTQE 286 >UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=10 Tax=Saccharomycetaceae RepID=PRP22_YEAST Length = 1145 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 594 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK----EGLV 649 + KI A K + +++IE + + +VY GKV I FG FV I G + +GLV Sbjct: 150 STKIPAKIEAKIEEEVQKIESLDPSPVLHKVYEGKVRNITTFGCFVQIFGTRMKNCDGLV 209 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 HIS+++D+R D ++ GQ + V+V+++ G+I LS+K + S Sbjct: 210 HISEMSDQRTLDPHDVVRQGQHIFVEVIKIQNNGKISLSMKNIDQHS 256 >UniRef50_UPI0001B43B43 general stress protein 13 n=1 Tax=Listeria monocytogenes FSL F2-515 RepID=UPI0001B43B43 Length = 104 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 49/70 (70%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 + +VG V +GKV I +GAFVA+ +GLVHIS+I V+ + D+L++GQEV VK+ Sbjct: 2 STFKVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKI 61 Query: 677 LEVDRQGRIR 686 L++D + +I+ Sbjct: 62 LDIDERKKIK 71 >UniRef50_C7RH14 RNA binding S1 domain protein n=4 Tax=Anaerococcus RepID=C7RH14_ANAPD Length = 699 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 +++ G + GKV I DFGAFV IG G +GLVH+S+I++K ++ + L Q V VKV+ Sbjct: 621 DLKEGMILKGKVRNITDFGAFVDIGVGIDGLVHVSKISNKFIKNPNEVLTNSQVVEVKVI 680 Query: 678 EVDRQG-RIRLSIKEATEQ 695 E+DR+ RI LS+K+ E+ Sbjct: 681 EIDRKKERIGLSMKDIGEK 699 >UniRef50_C9KMW6 RNA-binding protein n=3 Tax=Clostridiales RepID=C9KMW6_9FIRM Length = 152 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 5/77 (6%) Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 T I +FGAFV + GK GL+HIS++AD V+ V D+L +V VKVL +D +G+I LSI Sbjct: 14 TGITNFGAFVELPEGKTGLIHISEVADVYVKDVHDFLSEKDKVKVKVLSIDDRGKIALSI 73 Query: 690 KEATEQSQPAAAPEAPA 706 K+ E+ PEA A Sbjct: 74 KQLQEK-----KPEAQA 85 >UniRef50_A9WBG5 RNA binding S1 domain protein n=2 Tax=Chloroflexus RepID=A9WBG5_CHLAA Length = 520 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E A + VG V G +T FGAF IG GK+GL+H+S++A+ RVEK D +++G+ Sbjct: 202 EKLAALRVGDVVEGVITGFAPFGAFADIGVGKDGLIHVSELAEGRVEKPEDAVKVGERYQ 261 Query: 674 VKVLEVDRQ-GRIRLSIKEA 692 K+LE+D + RI LS++ A Sbjct: 262 FKILEIDGEAARISLSLRRA 281 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 57/86 (66%), Gaps = 5/86 (5%) Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 H RR++++ +E+ GKVT I +G FV IG G++GLVHIS+++D+R+E ++ + Sbjct: 93 HKPRRLKDLQPGMEL----EGKVTSIALYGVFVDIGVGRDGLVHISEMSDRRIETPSEVV 148 Query: 667 QMGQEVPVKVLEVDRQG-RIRLSIKE 691 Q+G V V V ++ + RI L++++ Sbjct: 149 QIGDTVKVWVKSIEPEARRISLTMRD 174 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 5/109 (4%) Query: 596 KIAATDGEKAK--HAIRRI--EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 KI DGE A+ ++RR + ++E G++ G V+ I FGAFV IG G++GLVHI Sbjct: 263 KILEIDGEAARISLSLRRALRTQRMQQLETGQILEGTVSGIAPFGAFVDIGVGRDGLVHI 322 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAA 700 S +A RVEKV D +++G +V VKVL VD+Q + R+S+ E+ QPA+ Sbjct: 323 SALAPHRVEKVEDVVKVGDKVKVKVLGVDQQSK-RISLTMRLEEEQPAS 370 >UniRef50_B9L032 30S ribosomal protein S1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L032_THERP Length = 443 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 12/136 (8%) Query: 586 TIEIEDDGTVKIAATDGEKAKHA--IRRIE-----EITAEIEVGRVYTGKVTRIVDFGAF 638 + + D+ V + + + E+ K A IRR + ++ ++ +VG+V G +T++ FGAF Sbjct: 267 VLRVGDEVDVMVLSVNPEQRKIALSIRRTQPEPWMQVASQFQVGQVVRGTITQLASFGAF 326 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQS- 696 + G EGL+H+S++A RVE + LQ G +V V+V+ +D + RI LS++ A E S Sbjct: 327 ARLQEGVEGLIHVSELAGWRVEHPNEVLQEGDDVIVRVIRIDPARRRIGLSLRRALEISD 386 Query: 697 ---QPAAAPEAPAAEQ 709 + PEA A +Q Sbjct: 387 EELEATLGPEAVAIKQ 402 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 6/78 (7%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G G+VT I DFG FV IGG +GLVH+S+I+ RV+ ++ L++G EV V VL V+ Sbjct: 225 GETRRGRVTSIADFGVFVDIGGA-DGLVHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNP 283 Query: 681 RQGRIRLSIKEATEQSQP 698 Q +I LSI+ ++QP Sbjct: 284 EQRKIALSIR----RTQP 297 >UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflexi (class) RepID=A9AV75_HERA2 Length = 415 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 4/89 (4%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 R +++ ++E G V TG+VT + DFGAFV IGG +GLVH+S+++ RV+ + L++G Sbjct: 223 RKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIGGA-DGLVHLSELSWSRVKHPEEVLKVGD 281 Query: 671 EVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 V V +L VD + RI LSIK Q++P Sbjct: 282 AVSVYILSVDEDKKRIALSIKRT--QAEP 308 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 8/115 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA--IRRIE-----EITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D +V I + D +K + A I+R + +T ++G+ +G VT++ FGAFV Sbjct: 277 LKVGDAVSVYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFV 336 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 + G EGL+HIS+++D+R++ D + G V +++ +D + RI LS + + Sbjct: 337 RLEDGIEGLIHISEMSDERIQHPRDVINEGDSVSARIIRIDPTRKRIGLSTRSGS 391 >UniRef50_D2RFP6 Translation initiation factor 2, alpha subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RFP6_ARCPR Length = 273 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 56/79 (70%), Gaps = 3/79 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 G + G VTR++DFGAFV++ KEG+VHIS++A ++ + D+++ GQ+V KVL V Sbjct: 20 GEIVIGTVTRVMDFGAFVSLDEYENKEGMVHISEVAPGWIKDIRDHVKKGQKVVCKVLGV 79 Query: 680 D-RQGRIRLSIKEATEQSQ 697 + ++G I LSIK+ TE+ + Sbjct: 80 NPKRGHIDLSIKDVTERQK 98 >UniRef50_A9ESM2 RpsA3 protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESM2_SORC5 Length = 683 Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 3/85 (3%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEKVTDYLQM 668 R E +T+ IE G ++ G V ++V +G FVA+ GG EGLVH+S+ + R K+ D + Sbjct: 394 RTEALTS-IEPGSLHKGIVRKVVAWGVFVALPDAGGVEGLVHMSEASHDRGAKLADLFKP 452 Query: 669 GQEVPVKVLEVDRQGRIRLSIKEAT 693 G E+ VKVL VD +G++ LS K AT Sbjct: 453 GAEIDVKVLRVDDKGKLWLSRKAAT 477 >UniRef50_D1B1Y3 Tex-like protein protein-like protein n=2 Tax=delta/epsilon subdivisions RepID=D1B1Y3_SULD5 Length = 704 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP-VK 675 +E+ G + +G V I DFGAFV IG +GL+HISQ+++KR+ + L + Q++ ++ Sbjct: 627 SELSEGSIVSGVVRNIADFGAFVDIGLKNDGLIHISQMSEKRIAHPLEVLSINQQLTRIR 686 Query: 676 VLEVDRQ-GRIRLSIKE 691 VLEVD++ G++ LS+KE Sbjct: 687 VLEVDKEKGKVSLSLKE 703 >UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WX93_ALIAD Length = 385 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 4/66 (6%) Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEA 692 DFGAFV + G EGLVH+SQI+++ V+K +D LQ GQEV V+VL VD + RI LS++++ Sbjct: 287 DFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDS 346 Query: 693 TEQSQP 698 SQP Sbjct: 347 ---SQP 349 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 R ++ E++ G V G V R+ DFGAFV +GG +GLVHIS+++ V ++ ++ G Sbjct: 179 RARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGA-DGLVHISELSFSHVNHPSEVVREGD 237 Query: 671 EVPVKVLEVDRQ-GRIRLSIKEA 692 V V+VL VD + GRI LSIK A Sbjct: 238 RVKVRVLRVDPEAGRISLSIKAA 260 >UniRef50_A9KLR6 Hydroxymethylbutenyl pyrophosphate reductase n=58 Tax=Bacteria RepID=A9KLR6_CLOPH Length = 643 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 1/71 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 VG V TG+V R+ +FGAFV + G + L+H+SQI+ + +EK D L++GQEV KV++ + Sbjct: 559 VGNVVTGRVARMTEFGAFVELEPGVDALLHVSQISKEHIEKPADALKIGQEVTAKVVDFN 618 Query: 681 R-QGRIRLSIK 690 + +I LSIK Sbjct: 619 NDEKKISLSIK 629 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 10/94 (10%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 A+I+VG V G V + DFGAF+ +GG +GL+HIS+++ R+E ++G VK Sbjct: 472 AKIKVGDVVEGTVKNVTDFGAFIDLGGA-DGLLHISEMSWGRIESPKKVFKVGD--TVKA 528 Query: 677 LEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 D QG +I LS+K P P A A+E+ Sbjct: 529 FIKDIQGEKIALSLK------FPEQNPWANASEK 556 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 11/200 (5%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R+DGR IR + + + R GSA + +G T+ L A + R+ + ++ +R Sbjct: 14 RVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVL--AAVYGPREVKNKSQMKNDRA- 70 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITE 433 Y+ +S GE RR + ++ +V+ +P T + + ++ + Sbjct: 71 IINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVIL-THLYPRTQIDIFMQVLQ 129 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 ++G + A + A+LAL+DAG+P+K V A G ++ L+D+ ED G D Sbjct: 130 ADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSP----LTDLNYIEDCAGGPDV 185 Query: 494 KVA--GSRDGISALQMDIKI 511 +A D ++ LQMD K+ Sbjct: 186 PIALLPKHDKVTLLQMDSKL 205 >UniRef50_D1PLC1 RNA-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLC1_9FIRM Length = 154 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 4/81 (4%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 ++VG + GKVT I FGAFV++ GK GLVHIS+++ + V+ ++ L+ GQ V VKVL Sbjct: 3 LQVGDIVEGKVTGIKPFGAFVSLPEGKTGLVHISEVSYEFVQDLSAVLEDGQTVTVKVLS 62 Query: 679 VDRQGRIRLSIKEATEQSQPA 699 + G+I LSIK ++QPA Sbjct: 63 IAPDGKIALSIK----RTQPA 79 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 18/236 (7%) Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 E R D R+ D +R ++ TG++P GSA F G T+A+ + ++++ Sbjct: 3 EERFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKV---N 59 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRR-EIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 + Y+ P+SV + G +R EI ++ +M + VR+ I Sbjct: 60 KGIIVCKYDMLPFSVPDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIY--I 117 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED--HLG 489 T+++ + AS+ AS+A DAG+P++ VA +A G K GD+ + D+ +E+ H G Sbjct: 118 TQADAGTRCASLTAASMACADAGLPMRDLVAAVAAG--KIGDSICL--DLTKEEEDFHEG 173 Query: 490 ---DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 D+ + S++ I LQ+D K +T+E ++ + K + I + + A+ Sbjct: 174 GATDVPIALLPSKNEIVLLQLDGK---VTREELKKVIEMGKKGAMEIYELEKAALK 226 >UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovibrio RepID=B8J034_DESDA Length = 489 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 6/125 (4%) Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK 645 +I D G V+IA + + +++T +E G V GKV R+ FGAFV I G Sbjct: 258 SISKSDKGQVRIALSRKQAEGDPW---QDVTQRLENGAVVQGKVVRLAPFGAFVEILPGI 314 Query: 646 EGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT-EQSQPAAAP 702 EGLVHIS+++ KRV K + LQ+G V VK+ E++ RI LS+++A + Q AA Sbjct: 315 EGLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINADSRRISLSLRDAEGDPWQDAAQQ 374 Query: 703 EAPAA 707 AP + Sbjct: 375 FAPGS 379 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 ++E + ++ VG GK++R FGAF+ + EG++H+S+++ RV + + +G Sbjct: 191 QLEALLEKLGVGDTVEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSLGD 250 Query: 671 EVPVKVLEVDR--QGRIRLSIKEATEQSQP 698 V KVL + + +G++R+++ + P Sbjct: 251 TVRAKVLSISKSDKGQVRIALSRKQAEGDP 280 >UniRef50_C9KQS8 Protein YhgF n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQS8_9FIRM Length = 733 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 +E++ G + G V I DFGAFV IG ++GL+HIS++A +RV+ + + +GQ + V V Sbjct: 651 SELKPGTILRGTVRNITDFGAFVDIGLHEDGLIHISELAKRRVKHPLEVVSIGQVLRVMV 710 Query: 677 LEVD-RQGRIRLSIKEATEQS 696 + VD ++GRI LS+K E++ Sbjct: 711 ISVDEKRGRIGLSLKRVPEEA 731 >UniRef50_P46836 30S ribosomal protein S1 n=166 Tax=Actinobacteria (class) RepID=RS1_MYCLE Length = 481 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 +G++ GKVT++V FGAFV + G EGLVHIS++A++ VE + +G + VKV+++D Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDID 352 Query: 681 -RQGRIRLSIKEATE 694 + RI LS+K+A E Sbjct: 353 LERRRISLSLKQANE 367 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 2/82 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E +++ G + G V+ IV+FGAFV +GG +GLVH+S+++ K ++ ++ +Q+G EV Sbjct: 201 EFLNQLQKGAIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSEVVQVGNEVT 259 Query: 674 VKVLEVDR-QGRIRLSIKEATE 694 V+VL+VD + R+ LS+K E Sbjct: 260 VEVLDVDMDRERVSLSLKATQE 281 >UniRef50_UPI00018508D5 general stress protein 13 n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018508D5 Length = 103 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 49/70 (70%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 ++ + EVG V TGKVT I +GAFVA+ +GLVHIS+I V+ V ++L++G EV V Sbjct: 1 MSTKYEVGNVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDVNEHLKIGDEVSV 60 Query: 675 KVLEVDRQGR 684 KVL V+ +G+ Sbjct: 61 KVLAVEAEGK 70 >UniRef50_C9XMD9 Putative 30S ribosomal protein S1 n=7 Tax=Clostridium RepID=C9XMD9_CLODC Length = 424 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 2/92 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E++ +EVG+ GKVT+I+ +GAFV IGG EGL HI+ +A RVE V D + GQEV Sbjct: 225 EDLFNSLEVGQKRDGKVTKIMPYGAFVDIGGI-EGLAHINNLAWTRVESVEDVVSEGQEV 283 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPE 703 V VL+V+++ +I L++K+ A E Sbjct: 284 EVYVLDVNKETKKIALALKDINNDPWDLIAKE 315 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I E+++ V KV RI++ GAFV I G + + IS+++D RV KVT+ + +G EV V Sbjct: 312 IAKEVQIDDVVNAKVLRIIEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIGDEVKV 371 Query: 675 KVLEVD-RQGRIRLSIKEATEQ 695 K+L+ + R+ +SIKEAT + Sbjct: 372 KILDFKPKTKRMLVSIKEATRE 393 >UniRef50_A6VTC2 RNA binding S1 domain protein n=2 Tax=Marinomonas RepID=A6VTC2_MARMS Length = 720 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 5/84 (5%) Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 H+++++E++ + G G VT + FGAFV +G ++GL+HISQ+AD+ V+ D + Sbjct: 638 HSVQKLEDV----QEGMTLEGVVTNVAAFGAFVDLGVHQDGLIHISQLADRFVKDPRDLV 693 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIK 690 ++GQ V V VLEVD Q R R+++K Sbjct: 694 RVGQVVKVTVLEVDVQ-RKRIALK 716 >UniRef50_C6VRE1 Polyribonucleotide nucleotidyltransferase (Putative) n=4 Tax=Lactobacillus RepID=C6VRE1_LACPJ Length = 135 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I + +G G+VT I +GAFV + G +GL+HIS+ + V+ +T+YL++GQ V V Sbjct: 2 IVSNYRIGMRVHGRVTGIQPYGAFVTLDGEHQGLIHISECHEGYVKSITEYLKVGQAVDV 61 Query: 675 KVLEVDR-QGRIRLSIKEATEQSQP 698 +L++D G+I LS++ Q P Sbjct: 62 IILDIDEYTGKISLSLRCIEHQPHP 86 >UniRef50_Q0B0Q8 RNA binding S1 n=2 Tax=Firmicutes RepID=Q0B0Q8_SYNWW Length = 152 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 3/83 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G + GKV I FGAF+ + GG GLVHIS+IAD V+ V D+++ G+ V VKVL V Sbjct: 11 GSIMEGKVQGITKFGAFIELPGGVVGLVHISEIADTYVKDVKDFIKEGESVKVKVLNVAG 70 Query: 682 QGRIRLSIKEATEQSQPAAAPEA 704 + +I LSIK+ + P + P+A Sbjct: 71 K-KIGLSIKQVS--PPPKSEPKA 90 >UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU2_THET1 Length = 431 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 8/98 (8%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + E+ G++ G+VT + DFGAFV IGG +GL+H+S+I+ R+ ++ L+ G EV Sbjct: 251 ERLIEELREGQIVKGRVTSLADFGAFVDIGGA-DGLIHLSEISWGRINHPSEVLKPGDEV 309 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQ 709 V VL +DR+ +I LS+K ++QP P A A E+ Sbjct: 310 DVMVLNIDREHKKIALSMK----RTQP--EPWATAMER 341 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 50/76 (65%), Gaps = 8/76 (10%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG++ G+VT+I FG FV + G EGLVH+S++ D +V Q+G ++ ++V+++ Sbjct: 343 DVGQIVEGEVTQIAPFGVFVRLEDGIEGLVHMSELGDTKV-------QVGDKLRLRVIKM 395 Query: 680 DRQ-GRIRLSIKEATE 694 D Q RI LS+++ E Sbjct: 396 DTQRRRIGLSVRQLDE 411 >UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Verrucomicrobia group RepID=RS1_CHLPN Length = 580 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 EI A G V +G VT+I FGAFV + G EGL+H+S+++DK K+ D + +G+ V Sbjct: 471 EIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGENVS 530 Query: 674 VKVLEVD-RQGRIRLSIKE 691 KV+++D ++ LS+KE Sbjct: 531 AKVIKLDPDHKKVSLSVKE 549 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 I + E+ +I +G G V I DFG F+ + G +GL+HI+ + KR+ ++ +++ Sbjct: 207 ISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDG-IDGLLHITDMTWKRIRHPSEMVEL 265 Query: 669 GQEVPVKVLEVDRQ-GRIRLSIKE 691 QE+ V +L VD++ GR+ L +K+ Sbjct: 266 NQELEVIILSVDKEKGRVALGLKQ 289 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E+ + V I + D EK + A+ E+I + G+ GK+ +++ +GAF+ Sbjct: 263 VELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFI 322 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 I G EGL+HIS+++ K + ++ + G EV VL + + +G+I L +K+ Sbjct: 323 EIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQT 377 >UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF0_9DELT Length = 476 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 7/109 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK 645 IE +D G V+I G K A E IT E G V G VTR+ FGAFV I G Sbjct: 254 IEEKDKGQVRI----GLSMKQAQADPWESITENFEPGSVVEGVVTRVAPFGAFVEISPGL 309 Query: 646 EGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 EGLVH+S+++ KRV K + +Q GQ+V VKV +D + RI LS+++A Sbjct: 310 EGLVHVSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMRDA 358 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 +E +G + + K K + E + + G V G VTR+ +G FV + G EGL Sbjct: 164 VEANGRNIVVSRRALKDKEQAESLHEFSRNYKPGDVLQGTVTRVEPYGVFVEVAPGLEGL 223 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR----QGRIRLSIKEA 692 VHIS+++ R + + +G V V +L ++ Q RI LS+K+A Sbjct: 224 VHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKDKGQVRIGLSMKQA 271 >UniRef50_C3XIZ7 30s ribosomal protein s1 n=6 Tax=Campylobacterales RepID=C3XIZ7_9HELI Length = 562 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 61/88 (69%), Gaps = 4/88 (4%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 +EI EI+VG V V+ I D+GAFV +G EG +HIS+++ DK +++ +D L++G+E Sbjct: 279 KEIKDEIKVGYVIRVTVSNIEDYGAFVDLGNDVEGFLHISEMSWDKNIKQPSDCLKVGEE 338 Query: 672 VPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + V+V+E+D R+R+S+K+ Q +P Sbjct: 339 INVEVIEIDPDNRRLRVSLKKL--QDKP 364 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 T E +VG V GKV I +FGAFV +G +GL+H + +K D ++G + V Sbjct: 368 FTKEHKVGDVIKGKVATITNFGAFVNLGAV-DGLLHNEDAFWDKSKKCADEFKVGDSIEV 426 Query: 675 KVLEVD 680 K+ ++D Sbjct: 427 KIDKID 432 >UniRef50_Q01BN8 Chloroplast polyprotein of elongation factor Ts (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01BN8_OSTTA Length = 294 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 598 AATDGEKAKHAIRRI--EEITAE---IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 A DG+ K RR + +T E + VG ++GKV RI D+G FV G ++GLVHIS Sbjct: 44 AEADGKADKKPRRRFPRKNVTVEDSAVVVGAEFSGKVKRIQDYGCFVDFGAKQDGLVHIS 103 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAA 700 ++ D VE V + + Q+V V V E+ + G+I L++K+ + + AA Sbjct: 104 ELKDGFVESVAEVVSQDQDVQVWVKEI-KDGKISLTMKKPKSEEELAA 150 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 3/89 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G G+V I FGAFV + G EGL+H+++++D KV D++++G +V V ++ ++ Sbjct: 182 GEKVEGEVKSIQPFGAFVEVAEGCEGLLHVTELSDDFNVKVEDFVKVGDKVTVTIVGIE- 240 Query: 682 QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 +++LS+KE ++ A EA AA +G Sbjct: 241 GAKVKLSMKEKLNLNEMNA--EASAAVEG 267 >UniRef50_C5VIF1 S1 RNA binding domain protein n=2 Tax=Bacteria RepID=C5VIF1_9BACT Length = 910 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 +++ +G G VT I +FGAFV IG ++GLVHISQ++D+ V T +++ Q V V+V Sbjct: 832 SDLIIGMELPGIVTNITNFGAFVDIGVHQDGLVHISQLSDRFVTDPTQVIRLHQHVRVRV 891 Query: 677 LEVD-RQGRIRLSIK 690 +EVD R+ RI LS+K Sbjct: 892 VEVDMRRKRIALSMK 906 >UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflexi (class) RepID=A9B766_HERA2 Length = 397 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 2/79 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + +E G V TG+V ++ FGAF+ +GG +GL HIS+++ +RV + LQ GQEV Sbjct: 201 ERLLETLEPGAVVTGRVNQLTPFGAFIDLGGA-DGLAHISELSWQRVNHPREVLQPGQEV 259 Query: 673 PVKVLEVDR-QGRIRLSIK 690 V VLEVDR + RI LS++ Sbjct: 260 QVYVLEVDRDRERIGLSLR 278 >UniRef50_O29723 Translation initiation factor 2 subunit alpha n=6 Tax=Euryarchaeota RepID=IF2A_ARCFU Length = 267 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 56/79 (70%), Gaps = 3/79 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 G + G V R++DFGAFV++ G+EG+VHIS++A ++ + ++++ GQ+V KVL+V Sbjct: 17 GEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICKVLDV 76 Query: 680 D-RQGRIRLSIKEATEQSQ 697 + ++G I LSIK+ E+ + Sbjct: 77 NPKRGHIDLSIKDVNERQR 95 >UniRef50_D2RKJ8 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Veillonellaceae RepID=D2RKJ8_ACIFE Length = 680 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSI 689 R + FGA V + EG++HIS+IA++R++K D L++GQEV VKVL VD +I LSI Sbjct: 582 RFLPFGAIVKLNDKNEGMIHISEIAEQRIDKPEDVLEIGQEVKVKVLRVDTEHKKIALSI 641 Query: 690 KEATEQSQPA 699 +A E ++ A Sbjct: 642 TKAKEDAEKA 651 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G G + IVDFG FV I +GLVHIS+++ R K D ++G+++ V + +D Sbjct: 487 GETVEGTIKSIVDFGMFVEIAPMVQGLVHISEVSWDRSVKPADLYKVGEKINVYIKGLDE 546 Query: 682 Q-GRIRLSIKEATEQSQPAAAPE 703 + GRI LS+K E AAA E Sbjct: 547 EKGRISLSVKALQEDPWVAAAKE 569 >UniRef50_B0S225 Polyribonucleotide nucleotidyltransferase n=2 Tax=Finegoldia magna RepID=B0S225_FINM2 Length = 140 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 I VG + GKVT I FGAFV G +GLVHISQI++ +EKV D L++ V KV+ Sbjct: 3 ISVGDIVEGKVTGITKFGAFVECEDGTKGLVHISQISNDYIEKVEDVLKVNDVVKCKVMS 62 Query: 679 VDRQGRIRLSIKEATEQSQ 697 ++ +I SIKE + + Sbjct: 63 IE-DNKISFSIKECLPKKE 80 >UniRef50_Q46C78 Translation initiation factor 2 subunit alpha (AeIF-2a) n=10 Tax=Archaea RepID=Q46C78_METBF Length = 268 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIG--GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 EVG V + DFGA+V + GG+EG +HIS+I V+ V DY++ GQ++ KVL Sbjct: 8 EVGEFVVCTVKNVTDFGAYVELEEFGGREGFIHISEIKAGWVKYVRDYVREGQKIVCKVL 67 Query: 678 EVD-RQGRIRLSIKEATEQSQPAAAPE 703 VD +G I LS+K+ E + A E Sbjct: 68 NVDPSRGHIDLSLKDVNEHQRRAKIQE 94 >UniRef50_A8Z6B9 Putative ribosomal protein S1 n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z6B9_SULMW Length = 614 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 63/99 (63%), Gaps = 3/99 (3%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K+ ++ ++ +++E G+V G V I +G+F+ IGGG +GL HI+ I+ +R+E ++ Sbjct: 220 KYIEKKKRKLISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEK 279 Query: 666 LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 L++GQ + +L +D+ + R++L +K+ QS P + E Sbjct: 280 LEIGQTINFVILSIDKIKNRVQLGLKQL--QSNPWNSLE 316 >UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales RepID=D2R4L6_9PLAN Length = 600 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 8/94 (8%) Query: 595 VKIAATDGEKAKHAI--RRIEE------ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 KI + D E+ + A+ ++++E I + + G+V +G VT+I +FG FV + G E Sbjct: 444 CKILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTKITNFGVFVGLEDGLE 503 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 GL+HIS++AD +VE D +++G ++ VK+L VD Sbjct: 504 GLLHISELADHKVENPEDVVKVGDKIDVKILRVD 537 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 4/89 (4%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + E+E+G+V G V I +FGAFV + GG +GL+HI+ ++ +R+ ++ + + QE+ Sbjct: 210 EALLKELEIGQVRKGVVKNIAEFGAFVDL-GGIDGLLHITDMSWERIGHPSEMVAIDQEI 268 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAA 700 V VL +DR+ +I L +K+ ++ P A Sbjct: 269 EVMVLHIDREKKKIALGLKQ--KEGNPWA 295 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEV 672 ++ + VG V G V ++ +GAFV + G EGLVHIS+++ +RV ++ + +G E+ Sbjct: 296 DVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEI 355 Query: 673 PVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAP 705 V +L VD+ G ++ L +K+ E A + P Sbjct: 356 SVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYP 389 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 59/109 (54%), Gaps = 7/109 (6%) Query: 601 DGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 DG++ +++ +E + + V + GKV + ++GAFV + G +GL+H+S ++ Sbjct: 365 DGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMS 424 Query: 656 -DKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAP 702 +++ ++ L+ GQ V K+L VD++ RI L +K+ E P Sbjct: 425 WTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPWARDIP 473 >UniRef50_B8D058 RNA binding S1 domain protein n=60 Tax=cellular organisms RepID=B8D058_HALOH Length = 722 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++E G + G V +VDFGAFV IG +GLVHIS+++ V+ +Q+G V VK+L Sbjct: 648 DLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKIL 707 Query: 678 EVD-RQGRIRLSIK 690 EVD R+ RI LS+K Sbjct: 708 EVDERRNRISLSMK 721 >UniRef50_D1ICQ1 Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1ICQ1_VITVI Length = 803 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 3/76 (3%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 E E+ VY G+V+R++D G FV + GKEGLVH+SQIA +RV D ++ QEV VK Sbjct: 166 EPELYNVYKGRVSRVMDTGCFVQLNDLKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVK 225 Query: 676 VLEVDRQGRIRLSIKE 691 V+ V Q ++ LS+++ Sbjct: 226 VISVSGQ-KLSLSMRD 240 >UniRef50_B8CY92 CRISPR-associated RAMP protein, Cmr6 family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CY92_HALOH Length = 376 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 2/71 (2%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGK--EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 G + G+VTRI +GAFV + K +GL++IS IADK V+ +T+Y+ G ++ VK++ + Sbjct: 17 GDIVEGRVTRIKPYGAFVRLDEKKKIDGLIYISNIADKYVKDITNYINEGDQIRVKIINI 76 Query: 680 DRQGRIRLSIK 690 ++ G+I LS K Sbjct: 77 EKDGKIALSFK 87 >UniRef50_B0MBX8 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=B0MBX8_9FIRM Length = 309 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 ++A + EKAK A + A + G V G V I+ +GAFV +G G GL+HISQ ++ Sbjct: 182 LSAKEVEKAK-AQEELNHKMAMMRPGMVLEGTVENIMPYGAFVDLGDGLSGLIHISQFSE 240 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 KR++ + ++ GQ+V VKVL++ +I LS+K A E+S+ A E Sbjct: 241 KRIKSPKEMVEEGQKVKVKVLKI-ADNKISLSMK-ALEESREAEKVE 285 >UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotogaceae RepID=B1LBI3_THESQ Length = 543 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E I V V TGKVT I+ GAFV + G EG V +S+I+ KR+++ + L++G++V Sbjct: 350 ENIEDRYNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKV 409 Query: 673 PVKVLEVDRQGR-IRLSIKEATEQSQPAAAPE 703 VK+L++D++ R I LSIK E A E Sbjct: 410 KVKILKIDKENRKITLSIKRTQENPWERALKE 441 >UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcaceae RepID=RS1_STAS1 Length = 393 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 595 VKIAATDGEKAKHAIRR-----IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 +K D E+ +I+ E I E G V G V R+ +FGAFV I G +GLV Sbjct: 247 IKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQGLV 306 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 HIS+I+ + ++ L+ GQ V VKVL VD + RI LSIK Sbjct: 307 HISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIK 348 >UniRef50_Q0DZI0 Os02g0617700 protein (Fragment) n=3 Tax=Oryza sativa RepID=Q0DZI0_ORYSJ Length = 322 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 608 AIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 AI ++E + EIEVGR Y G V+ I ++GAFV GG++GL+HIS+++ +V KV+D + Sbjct: 14 AIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKVSKVSDVV 73 Query: 667 QMGQEVPVKVLEVDRQGRIRLSIK 690 +GQ + + + D +G I+LS+K Sbjct: 74 SVGQVLSLTCIGQDLRGNIKLSLK 97 >UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovibrionales RepID=C6BYI5_DESAD Length = 503 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 +EI + + G TG V R DFGAFV I G EGLVH+S+++ KRV K D + GQE Sbjct: 281 DEIGDKFKAGDKVTGTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQE 340 Query: 672 VPVKVLEVDR-QGRIRLSIKEA 692 V V V ++D + RI LS+K+A Sbjct: 341 VAVMVKDIDPVKRRIGLSMKDA 362 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 11/94 (11%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 EKA+ A + +++ V GKVT+++ FGAFV + G EG+VHIS+++ R K Sbjct: 187 EKAREAFMQ------DVQPDAVMEGKVTKLMPFGAFVELTPGVEGMVHISELSWSRSAKP 240 Query: 663 TDYLQMGQEVPVKVLEV----DRQG-RIRLSIKE 691 D +Q G EV V++L + D +G +I LS+K+ Sbjct: 241 EDVVQPGDEVSVRILSMEPRKDGKGLKIGLSLKQ 274 >UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Tax=Listeria monocytogenes str. 1/2a F6854 RepID=Q4EP69_LISMO Length = 355 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 6/94 (6%) Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A + EKA + + +EI+ G V G V R+ +FGAFV IGG +GLVHISQI+ K Sbjct: 230 AVVETEKASQK----QALLSEIKEGDVIEGTVQRLANFGAFVDIGG-VDGLVHISQISYK 284 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 + + L+ GQ+V VKV+ +D + RI LSIK Sbjct: 285 HIATPQEVLEEGQKVTVKVIGIDPENERISLSIK 318 >UniRef50_Q7VJV6 Ribosomal protein S1 n=3 Tax=Helicobacter RepID=Q7VJV6_HELHP Length = 552 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 2/85 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 +EI E+EVG V+ I +GAFV +G EG +HIS+I+ DK ++ + YL +GQE Sbjct: 277 KEIEKELEVGYSIKVSVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKHPSSYLNVGQE 336 Query: 672 VPVKVLEVDRQG-RIRLSIKEATEQ 695 + V+++E+D R+R+S+K+ ++ Sbjct: 337 IDVEIIEIDTDNKRLRVSLKKLLDK 361 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG + GK+ + DFGAFV +GG +GL+H + K D ++G E+ VK++++ Sbjct: 371 QVGEIIKGKIATLTDFGAFVNLGGV-DGLLHNEDAYWDKKSKCKDGFKVGDEIEVKIIKI 429 Query: 680 DRQGRIRLSIKEATEQSQPA 699 D++ R+S+ + + PA Sbjct: 430 DKEHE-RVSLSKKLLEHSPA 448 >UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium kluyveri RepID=A5N6D1_CLOK5 Length = 314 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E I + + + G V+++++ GAF+ I G EGLVHIS+I+ + + + L++G +V Sbjct: 196 ENIGKKYKSNDIVDGIVSKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGDKV 255 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQP 698 VK+L +D + RI LSIKEA ++ P Sbjct: 256 KVKILNIDEKASRISLSIKEAQDKFSP 282 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 2/79 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +++ + I G G+V+RI +FG FV +GG EGLVHIS+++ K+++ ++ + +G ++ Sbjct: 111 KKLWSTISKGDKIEGRVSRITNFGVFVDLGGV-EGLVHISELSWKKIKDPSEVVSVGDKL 169 Query: 673 PVKVLEVDR-QGRIRLSIK 690 V VL +++ + RI LSIK Sbjct: 170 KVYVLNLNQDRNRISLSIK 188 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 17/186 (9%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA--RDAQVLDELMGER 372 R+DGR + +R + + TGV+ GSA G + +V + A + AQ +D+ + Sbjct: 13 RLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAI--- 69 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV-LAVMPDMDKFPYT-VRVVSE 430 YN +SV E G P RR + +L + A+M +++ P + V E Sbjct: 70 ---VKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAIM--VERLPRAEIDVYIE 123 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + E++ + +AS+ AS+A+ DAG+P+K G G + + VVL D+ DED+ GD Sbjct: 124 VLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAG---KANGKVVL-DLSKDEDNYGD 179 Query: 491 MDFKVA 496 D +A Sbjct: 180 ADIPMA 185 >UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN6_9GAMM Length = 283 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E++ ++ G+ G V + D+GAFV +GG +GL+HI+ +A KRV+ +D +Q+G E+ Sbjct: 107 EKLLENLQEGQELKGVVKNLTDYGAFVDLGG-IDGLLHITDMAWKRVKHPSDVVQIGDEI 165 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAP 705 VKVL+ DR+ R+ L +K+ + A A P Sbjct: 166 TVKVLKFDRERNRVSLGLKQMGDDPWVALARRYP 199 >UniRef50_Q72HU8 S1 domain protein n=8 Tax=Deinococci RepID=Q72HU8_THET2 Length = 142 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 51/76 (67%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E+E G V G+V R+V FGAFV + GG++GLVHISQIA + V V DYL G V V + Sbjct: 19 ELEAGTVVEGRVVRVVSFGAFVELAGGEQGLVHISQIAHEYVTNVRDYLNEGDIVQVLIK 78 Query: 678 EVDRQGRIRLSIKEAT 693 D +GR+ LSIK+ T Sbjct: 79 GRDAKGRLDLSIKDLT 94 >UniRef50_Q45388 Protein tex n=35 Tax=Proteobacteria RepID=TEX_BORPE Length = 791 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G V G VT + +FGAFV IG ++GLVHIS +A+K V+ D +++GQ V VKVLEVD Sbjct: 670 GMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDV 729 Query: 681 RQGRIRLSIK 690 + R+ L+++ Sbjct: 730 ARKRVALTMR 739 >UniRef50_D1C7V0 RNA binding S1 domain protein n=2 Tax=Chloroflexi RepID=D1C7V0_SPHTD Length = 459 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 10/90 (11%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 R IEE+T G G+VT I DFGAFV IGG +GLVH+S+++ RV+ ++ L++G Sbjct: 220 RLIEELTE----GETRRGRVTSITDFGAFVDIGGA-DGLVHLSELSWSRVKHPSEVLKVG 274 Query: 670 QEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 +EV V VL ++ + +I LSIK ++QP Sbjct: 275 EEVDVYVLGINAEEKKIALSIK----RTQP 300 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 5/95 (5%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + + EVG++ G VT++ +FGAF I G EGL+H+S+++++R+ + GQ++ + Sbjct: 306 VAMKYEVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSELSEQRIGHPRQVVSEGQDLIL 365 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAA----PEA 704 +++ +D + R+ LS++ A E + A PEA Sbjct: 366 RIIRIDPARRRMGLSLRRALEATDDEVAASLGPEA 400 >UniRef50_C5S7U3 RNA binding S1 domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U3_CHRVI Length = 402 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 7/103 (6%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 + EE+ A+++ G V TG VT + D+GAFV +GG EG++HISQ+A V+ + LQ+GQ Sbjct: 190 KAEELRAQLKEGAVLTGTVTSLKDYGAFVDLGG-LEGMIHISQLAFGHVKHPKEVLQVGQ 248 Query: 671 EVPVKVLEVD------RQGRIRLSIKEATEQSQPAAAPEAPAA 707 + V VL ++ ++ +I LSI+ + A + PA Sbjct: 249 PIEVSVLRIEPATDAKKRDKIALSIRALSRDPWLDAIEQFPAG 291 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 2/70 (2%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQMGQEVPVKVLEVD-RQGR 684 G+V R+ FGAF+ + G +GLVHIS++ A +RV+ +D L+ G EV V+ VD + R Sbjct: 296 GRVARLQPFGAFIELAPGVDGLVHISELGAGRRVQHPSDVLKEGDEVTATVIGVDLERRR 355 Query: 685 IRLSIKEATE 694 I LS+ E E Sbjct: 356 ISLSLDENRE 365 >UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=candidate division TM7 RepID=UPI00016B22D3 Length = 358 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 11/125 (8%) Query: 575 VIRALTEETGTTIEIE----DDGTVKIAATDGEKAKHAI-RRIEEITAEIEVGRVYTGKV 629 +++ L G T+++ D + K+ ++ E K + R E++ VG G V Sbjct: 153 ILQRLNNLIGKTMKVRILDADRKSNKLIFSEKEAVKDGLAERFEKLA----VGDQVEGVV 208 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 T +VDFG FV + G EGLVHIS+I+ +RV +DY++ GQ + K++ +D+ R+ LS+ Sbjct: 209 TGVVDFGVFVNVEG-IEGLVHISEISWERVNNPSDYVKTGQTIKAKIIAIDKD-RLSLSM 266 Query: 690 KEATE 694 K+ T+ Sbjct: 267 KQLTQ 271 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%) Query: 582 ETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV-----GRVYTGKVTRIVDFG 636 +TG TI+ KI A D ++ +++++ + EV G G VTRI FG Sbjct: 245 KTGQTIK------AKIIAIDKDRLSLSMKQLTQDPWLTEVQNFSKGDKVEGTVTRITPFG 298 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQ 695 AFV + E LVHIS++ D + + +L++D++ R I LS+ E+ ++ Sbjct: 299 AFVQVSPAIEALVHISELGDSNNVDPEKVFTLNERKEFVILDIDKENRKISLSLGESNKK 358 >UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q7PT33_ANOGA Length = 1288 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 5/79 (6%) Query: 622 GRVYTGKVTRIVDFGAFVAIGG---GKEGLVHISQIADK-RVEKVTDYLQMGQEVPVKVL 677 G +Y G+V IV FG FV + G KEGLVHISQ++ + RV VTD + G EV VKV+ Sbjct: 328 GHIYDGRVVNIVAFGCFVQLNGFRRKKEGLVHISQLSTEGRVNLVTDVVNRGDEVKVKVM 387 Query: 678 EVDRQGRIRLSIKEATEQS 696 + +I LS+KE + S Sbjct: 388 SL-AGNKISLSMKEVEQSS 405 >UniRef50_Q1RJH1 30S ribosomal protein S1 n=16 Tax=Alphaproteobacteria RepID=RS1_RICBR Length = 572 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQE 671 E+I E VG+ TGKVT D+G F+ + G EGLVH S+I+ K + L +GQE Sbjct: 284 EKIKEEFPVGKKMTGKVTNFADYGVFIELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQE 343 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQ 695 V VLEVD + R+ LSIK+ + Sbjct: 344 VEFMVLEVDTEKHRVSLSIKQCQQN 368 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E+ ++I+ G + G V I D+GAF+ + G +GL+H++ I+ RV ++ L+ Q+V Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDL-GSVDGLLHLTDISWARVNHPSEVLEFNQKV 257 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQ 709 V V++ + + RI L +K+ E P ++ Sbjct: 258 KVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKK 295 >UniRef50_B6KTW9 S1 RNA-binding domain containing protein n=3 Tax=Toxoplasma gondii RepID=B6KTW9_TOXGO Length = 378 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%) Query: 624 VYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 682 ++ G V ++ +GAFV + KEGL+HIS+I+D+RVE V D L +GQEV VKVL + Sbjct: 34 IHKGVVKKLQSYGAFVKVPDLDKEGLLHISRISDQRVENVEDVLAVGQEVWVKVLSQE-D 92 Query: 683 GRIRLSIKEATEQ 695 G++RL +K + Sbjct: 93 GKLRLCMKSVNQH 105 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 1/72 (1%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 E+ ++ G V RI +FGAFV+I G ++GL+HIS I+ +++++V D L +G +V VKV + Sbjct: 130 ELDSIHQGTVRRIQEFGAFVSIDGFDRDGLLHISCISSQKLDRVDDALAVGDKVWVKVTK 189 Query: 679 VDRQGRIRLSIK 690 V+ G+ L ++ Sbjct: 190 VEEGGKYGLDMR 201 >UniRef50_C6E3L9 RNA binding S1 domain protein n=10 Tax=Bacteria RepID=C6E3L9_GEOSM Length = 756 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 A+++ G + G VT + FGAFV IG ++GLVH+SQ+ + + D +++GQ V VKV Sbjct: 644 ADLKEGMILQGVVTNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKVGQIVKVKV 703 Query: 677 LEVD-RQGRIRLSIKEAT-EQSQPAAAPEAP 705 L D + RI LSIK+A E++Q A P Sbjct: 704 LSADPERKRISLSIKQAEPEKAQKNAEVRKP 734 >UniRef50_B4UDY4 RNA binding S1 domain protein n=4 Tax=Anaeromyxobacter RepID=B4UDY4_ANASK Length = 537 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E A + G V+ G VT + D+GAFV IGG EGLVH+S++A RV K D L G V Sbjct: 318 ETRARLAPGAVFDGVVTSVQDYGAFVDIGG-VEGLVHVSELAWDRVSKPQDLLSAGDAVQ 376 Query: 674 VKVLEVD---RQG-RIRLSIK 690 V+VL +D ++G RI LS+K Sbjct: 377 VQVLRIDEDPKKGERIGLSVK 397 >UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus RepID=RS1_STAAC Length = 391 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E I + V G V R+ +FGAFV I G +GLVHIS+IA K + + L+ GQ+ Sbjct: 269 FENIKGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQ 328 Query: 672 VPVKVLEVDRQG-RIRLSIK 690 V VK+L +D + R+ LSIK Sbjct: 329 VNVKILGIDEENERVSLSIK 348 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G V GKV R+ FGAF+ IGG +GLVH+S+++ + V+ + + +GQ+V VK+ +DR Sbjct: 194 GDVIDGKVARLTQFGAFIDIGG-VDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252 Query: 682 QG-RIRLSIKEA 692 RI LSIK+ Sbjct: 253 DTERISLSIKDT 264 >UniRef50_P46837 Protein yhgF n=748 Tax=cellular organisms RepID=YHGF_ECOLI Length = 773 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 17/112 (15%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E +++ G + G VT + +FGAFV IG ++GLVHIS +++K VE ++ G V Sbjct: 643 ETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVK 702 Query: 674 VKVLEVDRQ-GRIRLSIK----------------EATEQSQPAAAPEAPAAE 708 VKVLEVD Q RI L+++ E + ++PAA P A+ Sbjct: 703 VKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQNNRPAAKPRGREAQ 754 >UniRef50_C4V2L6 Possible 30S ribosomal protein S1 n=2 Tax=Selenomonas RepID=C4V2L6_9FIRM Length = 370 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + + IE ++ G V R+VD+GAF+ IGG +GL HIS +A RV+ ++ L++GQE+ Sbjct: 180 EAVFSAIEPEQIVRGTVKRLVDYGAFIDIGG-VDGLAHISDLAWHRVKHPSEVLEVGQEL 238 Query: 673 PVKVLEVDRQ-GRIRLSIKE 691 V V VDR RI LS+K+ Sbjct: 239 DVYVKSVDRDTKRISLSVKD 258 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G GK+ ++ DFGAF+ I G +GL+ + ++A+KR+E+ + + G V VKVL +D Sbjct: 274 GDFIEGKIIKLTDFGAFMEIEPGFDGLIPMGELAEKRIERADEAVHTGDIVIVKVLRIDT 333 Query: 681 RQGRIRLSIKEATEQSQPA 699 ++ RI LSI +A + A Sbjct: 334 KRKRISLSITKAKRDADSA 352 >UniRef50_Q6BJC7 DEHA2G03410p n=4 Tax=Saccharomycetales RepID=Q6BJC7_DEBHA Length = 1716 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 8/93 (8%) Query: 594 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG--GKEGLVHI 651 T+K + +GE + +++ E++ EVG ++ G V R+ DFGAF+ + G GL H Sbjct: 1224 TLKESEINGEL--NVLKKFEDL----EVGEIFEGSVRRVTDFGAFIKLDGTVNISGLCHH 1277 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 684 SQI+D VE V+ G V VK+L +D++ + Sbjct: 1278 SQISDNDVENVSSLFGEGDRVKVKILAIDQEKK 1310 >UniRef50_A9BJ06 RNA binding S1 domain protein n=3 Tax=Thermotogaceae RepID=A9BJ06_PETMO Length = 123 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 50/83 (60%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + + G GKV I FGAF+ + G+EG VHIS+I+ K V +++ +L++G EV Sbjct: 2 VNESLATGDSVKGKVVDIKKFGAFLELENGEEGFVHISKISKKYVREISSFLKIGDEVQG 61 Query: 675 KVLEVDRQGRIRLSIKEATEQSQ 697 KV+ + G+ +S+K+ E+ + Sbjct: 62 KVIGRTKDGKYEISLKDFDEEKE 84 >UniRef50_C9LUH9 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUH9_9FIRM Length = 373 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 2/78 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +++EVG++ G V R+V++GAF+ I GG +GL HIS +A RV++ +D L +G EV V Sbjct: 185 VFSKLEVGQIIRGTVKRLVEYGAFIDI-GGVDGLAHISDLAWHRVKQPSDVLSVGDEVDV 243 Query: 675 KVLEVDRQ-GRIRLSIKE 691 V D + RI LS+K+ Sbjct: 244 YVKNFDPETKRISLSVKD 261 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRI 685 GK+ ++ DFGAF+ I G +GL+ + ++AD+R+ + + +Q+G V VK+L +D ++ RI Sbjct: 282 GKIIKLTDFGAFMEIEPGFDGLIPMGELADRRIARADEAVQLGDIVKVKILHIDMKRKRI 341 Query: 686 RLSIKEATEQSQ 697 LSI A ++ Sbjct: 342 SLSITRAQRDAE 353 >UniRef50_Q7UWH7 30S ribosomal protein S1 n=1 Tax=Rhodopirellula baltica RepID=Q7UWH7_RHOBA Length = 560 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 3/81 (3%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 VG V+ G+VTR +FGAFV + G EGL HIS++A RV +V+ + +G EV VK++ D Sbjct: 439 VGSVHKGEVTRTAEFGAFVRLTAGVEGLCHISELATHRVSRVSSVVNVGDEVDVKIMSFD 498 Query: 681 RQG-RIRLSIKEATEQSQPAA 700 R ++ LSIK A ++PAA Sbjct: 499 RDSQKVGLSIKAA--HAKPAA 517 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 62/93 (66%), Gaps = 3/93 (3%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 ++R E++ +IE G + G V + DFGAFV + GG +GL+H+S+++ +R++ ++ ++ Sbjct: 343 VKRQEQLE-KIEPGDILEGVVRSVRDFGAFVDV-GGLDGLIHVSKLSWERIKHPSEVIEE 400 Query: 669 GQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAA 700 GQ V V+V ++D+Q G++ L+ ++ E +A Sbjct: 401 GQNVKVRVDKIDKQTGKMSLTYRDLLENPWDSA 433 >UniRef50_A6GGH5 Ribosomal protein S1 n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GGH5_9DELT Length = 391 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 6/85 (7%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G++ TG V I +GAFV +GG EGL+HIS++ RVE+V D + +G+++ VKVL ++ Sbjct: 197 GQIVTGTVQTIQPYGAFVDLGG-VEGLIHISELGHGRVERVEDVVSVGEQIRVKVLTIEP 255 Query: 682 -----QGRIRLSIKEATEQSQPAAA 701 RI LS+++A + + PA A Sbjct: 256 GDGKVATRISLSLRQAEQGAGPAQA 280 >UniRef50_A9V260 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V260_MONBE Length = 375 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Query: 623 RVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 RVY G V + FG FV + G EGL+H+SQ++ RV+ V LQ+GQ+V VKV+EV Sbjct: 59 RVYLGVVKSVKPFGGFVELDGFTHEGLLHVSQLSKFRVDDVESVLQVGQQVFVKVIEVGE 118 Query: 682 --QGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 + RI LSIK +++ + P AEQ Sbjct: 119 PPEHRIALSIKTVDQRNGHDSDPAHVIAEQ 148 >UniRef50_B7GEU7 Predicted RNA binding protein (Contains ribosomal protein S1 domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GEU7_ANOFW Length = 167 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD- 680 G + TG VT I +G FV++ +GL+HIS+I D V+ + DY+ +G+ V VK++ +D Sbjct: 59 GAIVTGVVTGIQPYGIFVSLDEQTQGLIHISEITDGYVKNIYDYVDVGESVRVKIIAIDE 118 Query: 681 RQGRIRLSIKEATEQSQPAAAPEA 704 + RI LS+++ + P Sbjct: 119 KTKRISLSLRDVDHDATNIETPSG 142 >UniRef50_D2MNP2 General stress protein 13 n=1 Tax=Bulleidia extructa W1219 RepID=D2MNP2_9FIRM Length = 123 Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 1/74 (1%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E +VG++ GKVT + +GAFVAI GL+HIS+I+D V+ + ++++GQ V VK++ Sbjct: 2 EYKVGQIVEGKVTGLQPYGAFVAIDKNLSGLIHISEISDGFVKNIHSFVEVGQVVRVKII 61 Query: 678 EVD-RQGRIRLSIK 690 ++D + + +LS+K Sbjct: 62 DLDEKSNQAKLSLK 75 >UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSU3_CHLT3 Length = 616 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 E I + G TGKV I D+GAFV I G EGLVHIS+++ + ++ ++ MGQE Sbjct: 296 ENIEEKYPAGTRVTGKVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPNQFVTMGQE 355 Query: 672 VPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAP 705 V +L +D++ ++ LS+K+ E A + P Sbjct: 356 VECVILNIDKEHTKLSLSMKQTEEDPWIVLAEKYP 390 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 R +E+ A I+VG V G V I DFG FV + GG +GLVHI+ I R+ ++ + + Sbjct: 209 RRKEMLANIKVGMVLEGTVKNITDFGIFVDL-GGLDGLVHITDITWGRISHPSEAVNLDD 267 Query: 671 EVPVKVL--EVDRQGRIRLSIKEATEQSQPAAAPEAPAA 707 + V V+ + D+Q R+ L +K+ T + PA Sbjct: 268 PIKVVVIGYDADKQ-RVSLGMKQLTPHPWENIEEKYPAG 305 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDRQG 683 + G V I DFG FV + G +GLVHIS ++ K++ ++ ++ QE+ VKVL+ D + Sbjct: 395 HKGIVRNITDFGVFVELESGVDGLVHISDLSWTKKIRHPSEIVKKNQELDVKVLKFDVKA 454 Query: 684 R 684 R Sbjct: 455 R 455 >UniRef50_D1JBH6 Translation initiation factor 2, alpha subunit n=1 Tax=uncultured archaeon RepID=D1JBH6_9ARCH Length = 269 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 3/78 (3%) Query: 620 EVGRVYTGKVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E G + V + FGAFV++ GGKEGL+HIS++A V+ + DY++ Q+V KVL Sbjct: 8 EKGELVICAVKELKSFGAFVSVVEYGGKEGLIHISEVASGWVKHLRDYVREEQKVVCKVL 67 Query: 678 EVD-RQGRIRLSIKEATE 694 VD R+G I LS+K E Sbjct: 68 FVDARRGHIDLSLKAVNE 85 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 29/210 (13%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR+ + IR +++ GV+ + GSA G T A+ L R+ L Sbjct: 2 RFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQSNLK-------- 53 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEITE 433 Y P++ E +G RREI + + + + ++ PY T+ EI + Sbjct: 54 ---VSYRMLPFAGEERKGLGLT-RREIELSYIIAKALEPAII-FEEIPYLTIEASVEIIK 108 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------------DNYVVLSDI 481 ++ + +A++ SLAL AG+P+KA V IA+G V E D+ ++ ++ Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKEL 168 Query: 482 LGDEDHLGD---MDFKVAGSRDGISALQMD 508 ++ G+ +D +A ++ I+ LQ+D Sbjct: 169 PQYYEYYGEGKAVDIPMAMYKNKITLLQLD 198 >UniRef50_B0CAN6 S1 RNA binding domain protein n=11 Tax=Bacteria RepID=B0CAN6_ACAM1 Length = 720 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 5/89 (5%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K I + ++ E+E+ G VT + +FGAFV +G ++GLVHISQ+AD+ V+ Sbjct: 633 KEGITELTDLKPEMEL----EGIVTNVTNFGAFVDVGVHQDGLVHISQMADQFVKDPKQI 688 Query: 666 LQMGQEVPVKVLEVDRQ-GRIRLSIKEAT 693 +++GQ V V+VLEV+++ RI LS++ + Sbjct: 689 VKVGQVVKVRVLEVNQKLKRIGLSMRSTS 717 >UniRef50_Q1ZC98 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZC98_9GAMM Length = 723 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 5/83 (6%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 I +I ++ ++E+ G +T + FGAFV IG ++GL+H+SQ+A+K V+ + ++ Sbjct: 639 INKISDLYTDMEI----QGVITNVTSFGAFVDIGVHQDGLIHLSQLANKFVKDPFEVVKT 694 Query: 669 GQEVPVKVLEVDRQ-GRIRLSIK 690 GQ V V+VL VD + RI LS++ Sbjct: 695 GQIVQVRVLSVDSERKRISLSLR 717 >UniRef50_Q9ZKF6 30S ribosomal protein S1 n=44 Tax=Epsilonproteobacteria RepID=RS1_HELPJ Length = 552 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQE 671 EEI +++ G V+ I +G FV IG EG +H+S+I+ DK V + YL +GQE Sbjct: 276 EEIQDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDKNVSHPSHYLSVGQE 335 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQ 695 + VK++++D + R+R+S+K+ T + Sbjct: 336 IDVKIIDIDPKNRRLRVSLKQLTNR 360 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG + GKV + DFGAF+ +GG +GL+H + +K D+ ++G + VK+L++ Sbjct: 370 QVGDIVEGKVATLTDFGAFLNLGGV-DGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKI 428 Query: 680 DRQG-RIRLSIK 690 +++ +I LS K Sbjct: 429 NKKDKKISLSAK 440 >UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMY1_FIBSS Length = 590 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ +E +V G V I DFGAF+ +GG +GL+HI+ ++ KR+ ++ LQ+GQEV Sbjct: 204 DVLETLEKNQVRKGIVKNITDFGAFIDLGG-VDGLLHITDMSYKRINHPSEMLQLGQEVE 262 Query: 674 VKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAP 705 V VL+ D++ RI L +K+ A P Sbjct: 263 VMVLDFNDKKERISLGMKQLKPHPWKDIAERYP 295 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVD 680 G + GKV I D+GAFV + G EGL+H+S+++ + V+ + L +GQEV VL+V+ Sbjct: 297 GAIVKGKVVSITDYGAFVELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVE 356 Query: 681 RQG-RIRLSIKEATEQSQPAAAPEAP 705 RI L +K+ + E P Sbjct: 357 EDAERISLGMKQLESDPWDSIETELP 382 Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 7/101 (6%) Query: 601 DGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 D E+ ++++E I E+ G G++ I FGAFV I G +GL+H+S ++ Sbjct: 358 DAERISLGMKQLESDPWDSIETELPPGARVVGEIRNIASFGAFVEIKEGVDGLIHVSDMS 417 Query: 656 -DKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATE 694 K++ + ++ G +V VL VD++ RI LS+K TE Sbjct: 418 WTKKITHPNEMVKKGDKVECVVLAVDKEKRRISLSMKHLTE 458 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-I 685 GK+ R++D G V + G EG + +S++ + ++ D ++G EVP V E+D+ R I Sbjct: 476 GKIVRMLDRGVVVELADGIEGFIPVSKLTAEYIKVPADAFKVGDEVPAVVTEIDQNNRKI 535 Query: 686 RLSIKEATEQSQPA 699 LS+ + + + A Sbjct: 536 YLSVVDYFKNRESA 549 >UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H149_9FIRM Length = 703 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRI 685 G + +I ++GAF+ + G +GL+HIS+I+ RVE + L +G V K+LE+D+ + RI Sbjct: 586 GDIVQIKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRRI 645 Query: 686 RLSIK 690 LSIK Sbjct: 646 SLSIK 650 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 2/83 (2%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 +R++E+ ++ VG GKV R ++GAFV I GG +GL+HIS+I+ +++ ++ L +G Sbjct: 484 KRLQELWKKLNVGDDIEGKVMRFTEYGAFVDI-GGVDGLLHISEISWGKLKHPSEVLTVG 542 Query: 670 QEVPVKVLEVD-RQGRIRLSIKE 691 + VK+L ++ +G+I L K+ Sbjct: 543 DTINVKILSLNPEKGKISLGYKQ 565 >UniRef50_Q5JE49 Translation initiation factor 2 subunit alpha n=2 Tax=Thermococcus RepID=IF2A_PYRKO Length = 275 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIG--GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E G V I +GAF+ + GKEG +HIS++A V+ + DYL+ GQ++ KV+ Sbjct: 10 EEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAKVI 69 Query: 678 EVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 VD +G I LS+K +Q + A E A++ E Sbjct: 70 RVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAE 104 >UniRef50_C4R3F9 RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both n=1 Tax=Pichia pastoris GS115 RepID=C4R3F9_PICPG Length = 1694 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGG--GKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 +++VG VY G + +I+DFG F+ + G +GL H SQI+D ++E G V VK Sbjct: 1234 DLKVGDVYEGTIKKIMDFGVFITLDGVHSVDGLCHRSQISDSKIENFESLFNQGDRVKVK 1293 Query: 676 VLEVDRQGR 684 +L+++R + Sbjct: 1294 ILDINRNKK 1302 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 3/110 (2%) Query: 583 TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 T T + ++D + E AK ++ E +++ G + G +TRI +FG +V++G Sbjct: 1114 TATVLSVDDTTRQIFVSLRSENAKD---KLIESFEDVKRGDIVRGFITRISNFGVYVSLG 1170 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 LV ++ I+D + ++++ Q V K+++ + RI +++KE+ Sbjct: 1171 RTVFALVRVTDISDLFLTDWKKHVKLNQFVTGKIVDAGEERRILMTLKES 1220 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 957 0.0 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 954 0.0 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 948 0.0 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 948 0.0 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 931 0.0 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 927 0.0 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 922 0.0 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 920 0.0 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 907 0.0 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 907 0.0 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 906 0.0 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 901 0.0 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 898 0.0 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 896 0.0 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 896 0.0 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 895 0.0 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 894 0.0 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 890 0.0 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 886 0.0 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 882 0.0 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 881 0.0 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 881 0.0 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 881 0.0 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 879 0.0 UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Ta... 876 0.0 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 876 0.0 UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Ta... 875 0.0 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 870 0.0 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 868 0.0 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 868 0.0 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 866 0.0 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 865 0.0 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 864 0.0 UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Ta... 862 0.0 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 862 0.0 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 859 0.0 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 851 0.0 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 851 0.0 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 849 0.0 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 849 0.0 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 839 0.0 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 839 0.0 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 838 0.0 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 837 0.0 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 830 0.0 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 826 0.0 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 825 0.0 UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 T... 812 0.0 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 800 0.0 UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 T... 795 0.0 UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 T... 795 0.0 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 790 0.0 UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 T... 788 0.0 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 788 0.0 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 785 0.0 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 780 0.0 UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G... 773 0.0 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 772 0.0 UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms Rep... 768 0.0 UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Ta... 759 0.0 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 755 0.0 UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mit... 753 0.0 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 753 0.0 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 751 0.0 UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragm... 736 0.0 UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG... 729 0.0 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 726 0.0 UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 T... 723 0.0 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 722 0.0 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 715 0.0 UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Ta... 715 0.0 UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 704 0.0 UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 689 0.0 UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putat... 687 0.0 UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 T... 671 0.0 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 666 0.0 UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichop... 664 0.0 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 640 0.0 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 625 e-177 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 563 e-158 UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 ... 534 e-150 UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis R... 511 e-143 UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun se... 507 e-142 UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornu... 389 e-106 UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragm... 333 2e-89 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 228 8e-58 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 211 1e-52 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 205 6e-51 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 204 1e-50 UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q... 203 3e-50 UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosac... 196 2e-48 UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9... 195 7e-48 UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylas... 194 1e-47 UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=A... 191 7e-47 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 191 7e-47 UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1... 190 2e-46 UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE 185 5e-45 UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelo... 185 5e-45 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 184 1e-44 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 184 1e-44 UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylas... 176 3e-42 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 166 3e-39 UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 161 8e-38 UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 T... 161 9e-38 UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleo... 155 6e-36 UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 ... 145 5e-33 UniRef50_Q0PQM6 Polyribonucleotide nucleotidyltransferase (Fragm... 136 3e-30 UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridiu... 130 2e-28 UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8... 130 2e-28 UniRef50_C0DB62 Putative uncharacterized protein n=1 Tax=Clostri... 127 1e-27 UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1... 127 2e-27 UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes Rep... 126 2e-27 UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 126 2e-27 UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thal... 126 3e-27 UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX... 126 3e-27 UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 126 4e-27 UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 125 7e-27 UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 124 8e-27 UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales Re... 124 8e-27 UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=... 124 1e-26 UniRef50_UPI0001AF367B BCCT transporter n=2 Tax=Pseudomonas syri... 124 1e-26 UniRef50_C5ES10 RNA binding S1 domain-containing protein n=2 Tax... 124 1e-26 UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 124 1e-26 UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacill... 124 1e-26 UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 ... 124 1e-26 UniRef50_B0KVD5 30S ribosomal protein S1 n=1 Tax=uncultured cand... 124 1e-26 UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_D... 124 2e-26 UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovib... 124 2e-26 UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=... 124 2e-26 UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodother... 123 2e-26 UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensi... 123 2e-26 UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 123 3e-26 UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobacu... 122 3e-26 UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio R... 122 4e-26 UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=can... 122 4e-26 UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3... 122 4e-26 UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7... 122 5e-26 UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2... 122 7e-26 UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphil... 121 8e-26 UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=... 121 8e-26 UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1... 121 9e-26 UniRef50_A4IQA6 30S ribosomal protein S1 n=10 Tax=Bacillaceae Re... 120 2e-25 UniRef50_D2R2F1 RNA binding S1 domain protein n=1 Tax=Pirellula ... 120 2e-25 UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonat... 120 2e-25 UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL 119 3e-25 UniRef50_Q03SZ4 RNA binding protein (S1 domain) n=105 Tax=Firmic... 119 3e-25 UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 119 4e-25 UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Ver... 119 4e-25 UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicycloba... 119 5e-25 UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4... 119 5e-25 UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Con... 119 5e-25 UniRef50_Q6NDP1 30S ribosomal protein S1 n=165 Tax=Proteobacteri... 119 5e-25 UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria ... 119 5e-25 UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovib... 119 6e-25 UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium... 118 6e-25 UniRef50_C1A406 30S ribosomal protein S1 n=1 Tax=Gemmatimonas au... 118 6e-25 UniRef50_B1YKU0 RNA binding S1 domain protein n=3 Tax=Bacillales... 118 6e-25 UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergista... 118 7e-25 UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium klu... 118 7e-25 UniRef50_B0VI92 30S ribosomal subunit protein S1 (Modular protei... 118 7e-25 UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflex... 118 7e-25 UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacill... 118 8e-25 UniRef50_C5CIV0 RNA binding S1 domain protein n=1 Tax=Kosmotoga ... 118 8e-25 UniRef50_P37560 Uncharacterized protein yabR n=35 Tax=Firmicutes... 118 9e-25 UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus ... 117 1e-24 UniRef50_UPI000034EEAC 3'''' exoribonuclease family domain 1 pro... 117 1e-24 UniRef50_A8ZTA2 Ribosomal protein S1 n=22 Tax=Deltaproteobacteri... 117 2e-24 UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae... 117 2e-24 UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FA... 117 2e-24 UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcace... 117 2e-24 UniRef50_Q89AJ3 30S ribosomal protein S1 n=296 Tax=Proteobacteri... 117 2e-24 UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria Rep... 117 2e-24 UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroid... 117 2e-24 UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Ta... 117 2e-24 UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovib... 117 2e-24 UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 117 2e-24 UniRef50_Q1WSG8 S1-type RNA-binding domain n=18 Tax=Firmicutes R... 116 2e-24 UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=... 116 2e-24 UniRef50_C5RED5 RNA binding S1 domain protein n=1 Tax=Clostridiu... 116 3e-24 UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglo... 116 3e-24 UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovi... 116 3e-24 UniRef50_A2FJA8 S1 RNA binding domain containing protein n=1 Tax... 116 3e-24 UniRef50_A8ZTZ3 RNA binding S1 domain protein n=1 Tax=Desulfococ... 116 3e-24 UniRef50_A6CB07 30S ribosomal protein S1 n=1 Tax=Planctomyces ma... 116 4e-24 UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succino... 116 4e-24 UniRef50_B0MBX8 Putative uncharacterized protein n=7 Tax=Clostri... 116 4e-24 UniRef50_A8Z6B9 Putative ribosomal protein S1 n=1 Tax=Candidatus... 116 4e-24 UniRef50_C1ECK5 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 116 4e-24 UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflex... 116 5e-24 UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae... 116 5e-24 UniRef50_A8MK30 RNA binding S1 domain protein n=32 Tax=Firmicute... 115 5e-24 UniRef50_C5NX49 30S ribosomal protein S1 n=1 Tax=Gemella haemoly... 115 5e-24 UniRef50_A4ISC1 Polyribonucleotide nucleotidyltransferase, gener... 115 6e-24 UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio ... 115 6e-24 UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotoga... 115 6e-24 UniRef50_Q48082 30S ribosomal protein S1 n=129 Tax=Proteobacteri... 115 6e-24 UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium ... 115 7e-24 UniRef50_C4G9K7 Putative uncharacterized protein n=1 Tax=Shuttle... 115 7e-24 UniRef50_C6E3L9 RNA binding S1 domain protein n=10 Tax=Bacteria ... 114 1e-23 UniRef50_Q1RJH1 30S ribosomal protein S1 n=16 Tax=Alphaproteobac... 114 1e-23 UniRef50_C1ZHL8 Ribosomal protein S1 n=1 Tax=Planctomyces limnop... 114 1e-23 UniRef50_B8I046 RNA binding S1 domain protein n=13 Tax=Clostridi... 114 1e-23 UniRef50_B0PAJ2 Putative uncharacterized protein n=6 Tax=Bacteri... 114 1e-23 UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. ... 113 2e-23 UniRef50_P80870 General stress protein 13 n=12 Tax=Bacillales Re... 113 2e-23 UniRef50_D0J9D1 30S ribosomal protein S1 n=25 Tax=Bacteria RepID... 113 2e-23 UniRef50_A1QYS7 SSU ribosomal protein S1P n=23 Tax=Borrelia RepI... 113 2e-23 UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblay... 113 2e-23 UniRef50_B8DPH9 RNA binding S1 domain protein n=4 Tax=Desulfovib... 113 2e-23 UniRef50_B8D058 RNA binding S1 domain protein n=60 Tax=cellular ... 113 3e-23 UniRef50_A9KQA3 RNA binding S1 domain protein n=1 Tax=Clostridiu... 113 3e-23 UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus... 112 3e-23 UniRef50_C9KQS8 Protein YhgF n=1 Tax=Mitsuokella multacida DSM 2... 112 3e-23 UniRef50_UPI00016C0B56 30S ribosomal protein S1 n=1 Tax=Epulopis... 112 4e-23 UniRef50_A7GUA8 RNA binding S1 domain protein n=7 Tax=Bacillales... 112 4e-23 UniRef50_UPI00016BFB5D hypothetical protein Epulo_08978 n=1 Tax=... 112 4e-23 UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID... 112 5e-23 UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceu... 112 5e-23 UniRef50_B8HZ35 RNA binding S1 domain protein n=18 Tax=Bacteria ... 112 5e-23 UniRef50_B1C7U3 Putative uncharacterized protein n=1 Tax=Anaerof... 112 6e-23 UniRef50_C9XMD9 Putative 30S ribosomal protein S1 n=7 Tax=Clostr... 112 6e-23 UniRef50_A5D5X0 Predicted RNA binding protein n=5 Tax=Firmicutes... 112 7e-23 UniRef50_C8NGU9 Histidine triad domain-containing protein n=1 Ta... 111 8e-23 Sequences not found previously or not previously below threshold: UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizo... 164 1e-38 UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun se... 164 1e-38 UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n... 162 4e-38 UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME 160 2e-37 UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n... 155 7e-36 UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agarica... 146 4e-33 UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyos... 143 2e-32 UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6... 142 4e-32 UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is ... 141 1e-31 UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=... 136 4e-30 UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94... 136 4e-30 UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleo... 134 1e-29 UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exo... 128 6e-28 UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2... 126 2e-27 UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group Re... 126 3e-27 UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 ... 118 8e-25 UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharo... 117 1e-24 UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD 116 3e-24 UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 116 4e-24 UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 115 5e-24 UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistoso... 115 6e-24 UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D... 114 1e-23 UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD 114 2e-23 UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta Re... 114 2e-23 UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=... 112 3e-23 UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mans... 112 4e-23 UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilag... 111 8e-23 >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 387/714 (54%), Positives = 500/714 (70%), Gaps = 4/714 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + ++ +T+ETG +ARQA AV+ + +T V TVV K KP QDFFPLT Sbjct: 1 MFKTHKVEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 VNYQE+TYA G+IPG +F+RE RPSE ETLI+RLIDRPIRPLF + + N+ QVI +V+ Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQH 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + NPDI++MI ASAAL+LSGIPF GPI ARVGY N YVLNPT DE+ ESKLDLVVA Sbjct: 121 DLENNPDILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AVLMVESEA LSE+ MLGA+ FG + Q VI I +L + A K ++ PE + Sbjct: 181 GTENAVLMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFS- 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE---TLDENELGEIL 297 L + + E L AY ITDKQ+RY +D IK+E ++ E E L +++ + Sbjct: 240 DLEKTMLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVF 299 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 ++ +VR +L RIDGR+ +R + G+LPRTHGSALFTRGETQALV ATLG Sbjct: 300 KRLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLG 359 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 T+ D Q +D L G +TFL HYNFPP+SVGETG + SP RREIGHG+LA R + ++P Sbjct: 360 TSEDEQYVDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPT 419 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 + FPYT+RVVSEITESNGSSSMA+VCG SLALMDAGVP+ VAGIAMGL+KEG+ +V+ Sbjct: 420 KEAFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVI 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDILGDEDHLGDMDFKVAG+++GI++LQMDIKI+GIT++IM++AL QAK R HIL M Sbjct: 480 LSDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEM 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 +A+ R ++SEF+PRI + I +KI++VIG GG VIR + E+TG I IEDDGT+KI Sbjct: 540 AKALTDARTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKI 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+ D + + A I I E EVG +Y G V + +FGAF+ G +GLVHISQ+A K Sbjct: 600 ASPDTKSIETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASK 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RV K TD ++ G +V V+++ D +G+IRLS+K +Q+ + + E Sbjct: 660 RVAKTTDVVKEGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEIPQDDLIKTEKE 713 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 343/686 (50%), Positives = 476/686 (69%), Gaps = 1/686 (0%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 + + + +E G +A+QA AV+V DT V VT + + G DFFPLTV+Y+E+ Sbjct: 5 EMELAGRPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEEKM 64 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 YAAG+IPG F +REGRPS L ARLIDRPIRPLFP+GF N+VQ++ATV+SV P+ Sbjct: 65 YAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNAPE 124 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 + AMIGAS AL++S IPF GPI RVG +ND++V+NPT+++ K S L+L VAG+ AV+ Sbjct: 125 LAAMIGASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDAVM 184 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVA 247 MVE+ A L ED +L A++FGHE+ + +++ + + GK + + + V + + Sbjct: 185 MVEAGANELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKSEPKLFLVPHEMEEAIR 244 Query: 248 ALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRS 307 A+ RL A R DK +R A + + ++T+ L +D+ E+ +H +EK+VVR Sbjct: 245 DYAKDRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMDK-EIAIAIHDLEKSVVRH 303 Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 + + R DGRE + +R + G+LPRTHGS LFTRG+TQ L TLG+ D QV+D Sbjct: 304 MITHEKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVIDG 363 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV 427 L E T ++ HYNFP YSVGE + SP RREIGHG LA+R ++ V+P +++FPYT+R+ Sbjct: 364 LGPETTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTIRL 423 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 VSE+ ESNGSSSM SVCG++L+LM+AGVPIK V+G+AMGLVKEGD Y +L+DI G ED Sbjct: 424 VSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQGMEDA 483 Query: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 LGDMDFKVAG+ +GI+A+QMDIK++G+++EI+ AL QAK R ILG M + I+ P + Sbjct: 484 LGDMDFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPAAE 543 Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 +S +APR+ TIKI DKI+DVIG GG V++ + +ETG I+I +DG + I + D E K Sbjct: 544 LSPYAPRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAEGMKK 603 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 A + IE+I E+EVG +YTG+VTR++ FGAFV + GKEGL HISQ+A RVEKV D +Q Sbjct: 604 AKQMIEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDVVQ 663 Query: 668 MGQEVPVKVLEVDRQGRIRLSIKEAT 693 +G ++ VKV+E+D +GRI LS K Sbjct: 664 VGDQLQVKVVEIDDKGRINLSHKAVL 689 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 355/712 (49%), Positives = 489/712 (68%), Gaps = 4/712 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M V ++ T+++E G +A+QA+ A ++ DT V VG KK +PG DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 VNY+E+ Y+ G++PG F +REGRPS+ TL ARLIDRPIRPLF EGF NEVQ+ +TV SV Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + +P++ AM+G+S AL +S IPF GPI VG I+ +YV+NPT ++ ++S + L VA Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT A+ MVE+ A+ +SE+ ML A++FGHE+ + + + +++ GK + + + + Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA---EDETLDENELGEIL 297 L A V A +E ++ A + +K+ R A ++ +K E + + A E+E +E+ IL Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHIL 299 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 IEK+ +R + + R DGR+ + IR L G+LPR HGS LFTRG+TQAL TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 R+ Q++D L E F+ HYNFP +SVGETG +P RREIGHG L +R + V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 ++FPYT+R+VSE+ ESNGSSS AS+CG++LA++DAGVPIKA VAGIAMGLVK GD+Y + Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G EDH GDMDFKVAG++DGI+ALQMDIKI+G++++I+ AL QAK RLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I+APR ++S +AP+I T+ I P+KIKDVIG GG I A+ +ETG I+IE DGTV I Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+ D + AI IE+I E+EVG VYTGKV RI FGAFV + G +GLVHIS++A + Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 RV KV D L++G EV VKV+EVD+QGR+ LS K E+ + + P AE+ Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEK 711 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 948 bits (2450), Expect = 0.0, Method: Composition-based stats. Identities = 353/705 (50%), Positives = 477/705 (67%), Gaps = 13/705 (1%) Query: 2 LNPIV--RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL 59 + PI+ R + +T+ETG +A QA AV+V +T V TVVG K+ G DFFPL Sbjct: 1 MPPIIHERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPL 60 Query: 60 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 TV Y+E+ YAAG+IPG FFRREG+PSE L ARL DRPIRPLFP+G+ NEVQVI+TV+S Sbjct: 61 TVEYEEKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLS 120 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + + PD++++IGASAAL+LS IP+ GP+GA R+G ++ + V+NPT +L ES++D+VV Sbjct: 121 ADQENEPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVV 180 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT A+LMVE +A +SED+ + AVV H++ + ++ EL AGKP+ ++ P N Sbjct: 181 AGTADAILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQEN 240 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETL---------DE 290 L ++A RL +A DK R ++ E IA + + Sbjct: 241 VELKQQIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTA 300 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 E+G++ ++ K +VR +L R DGR+ D IR + ++ G+LPR HGSALFTRG+TQ Sbjct: 301 KEVGDLFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQV 360 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 L TLGT + Q LD L E T ++ HYNFPP+S GE + P RR+IGHG LA+R Sbjct: 361 LTVCTLGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERA 420 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 +LAV+P D+FPYT+R+VSE+ SNGS+SMASVCG+SLALMDAGVPI+ VAG+AMGLV Sbjct: 421 LLAVLPSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVT 480 Query: 471 E--GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKG 528 + Y +L+DI G ED LGDMDFKVAG+RDGI+A+QMDIK+ GIT EIM+ AL QA+ Sbjct: 481 DQTTGRYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARR 540 Query: 529 ARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIE 588 RL IL M + I+APR ++S +APRI IKI P++I +VIG GG VIRA+ E+TGT I Sbjct: 541 GRLFILDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKIS 600 Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 IE+DGTV I+A + + A+ A+R IE +T EVG ++ G+V I+ GAFV I GK+G Sbjct: 601 IEEDGTVFISAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGF 660 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 +HIS+IA +RV V D L++GQE+ V V+ V G+I LS K Sbjct: 661 LHISEIAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKALL 705 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 360/715 (50%), Positives = 480/715 (67%), Gaps = 18/715 (2%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 ++ + L G +A QA+ +V+VS DT V VT G K+ + G DFFPLTV+Y+ER Sbjct: 10 KEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVDYEER 69 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 YA G+IPG F +REGRPSE L ARLIDRPIRPLFP+GF N+V ++ATV+SVN P Sbjct: 70 FYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQDNPP 129 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 +I AM GASAAL+LS +PF GPIGA VG + D+ V+NPT ++ ++S+L LVVAGT AV Sbjct: 130 EIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGTRDAV 189 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA-----GKPRWDWQPEPVNEA 241 +MVE+ AQ + E+ M+ A+ GHE+ + ++ I E +EA K + + E E Sbjct: 190 MMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEEKAE- 248 Query: 242 LNARVAALAEARLSDAYRI-----TDKQERYAQVDVIKSETIATLLAEDETLDENELGEI 296 L V A A L +A +KQER ++ +K E L E +E + I Sbjct: 249 LKEAVTAEAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFL-ETYPEEELTIKGI 307 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 L +I+K +VR ++L RIDGR+ D +R + G+LPRTHGS LFTRG+TQ L TL Sbjct: 308 LDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLSIVTL 367 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416 G D Q+LD+L E + F+ HYNFPPYSVGE + P RREIGHG LA+R + V+P Sbjct: 368 GAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALEPVIP 427 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 + FPYT+R+VSE+ ESNGS+SM SVCG++LALMDAGVPIKA VAG+AMGL+KEGD Sbjct: 428 PEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEGDEVA 487 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 +L+DI G ED LGDMDFKVAG++DGI+ALQMDIKI G+T++I+ AL QA+ R+HILG Sbjct: 488 ILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMHILGK 547 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 M + I+ PR ++S +APRI ++P+KI+D+IG GG +I+ + +ETG I+IEDDG + Sbjct: 548 MLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDDGRIF 607 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI------GGGKEGLVH 650 IAA D E + A+ IE +T EIEVG+VY GKVTRI DFGAFV + GKEGLVH Sbjct: 608 IAAVDKEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKEGLVH 667 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAP 705 ISQ+A RV++V D ++ G ++ VK + D QGR++LS K+A + P Sbjct: 668 ISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKDAIPAEEVREKKNPP 722 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 358/719 (49%), Positives = 478/719 (66%), Gaps = 12/719 (1%) Query: 3 NPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 P V ++ G +++ ETG +A+QA + +V + V T + G DFFPLTV Sbjct: 4 EPKVATVEFTGGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTV 63 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+E TYA GR PG F +REGRPSE E L +R IDRPIRPLFPEGF E QVIA V+S + Sbjct: 64 DYREYTYAGGRFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSAD 123 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + +PD+ + GASAAL++S IPFNGPIGA RVG I Q ++NPT DE++ SKL+++V G Sbjct: 124 SENDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVG 183 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T ++M+ES A +E++++ A+ FGH + + + I++L KE GK + P +++ Sbjct: 184 TAEGIVMIESGAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQP 243 Query: 242 LNARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILHA 299 + A L+DA K E YA+V IKS+ + A+D+ +LG+ Sbjct: 244 YLDGLRKKIGADLADALNTEKYPKSESYAKVKEIKSKLKEEIPADDDAA-LKKLGKYYEL 302 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 + +++ R +V + R DGR D IR + + VLPRTHGSA+FTRGETQALVT TLGT Sbjct: 303 LREDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTG 362 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 D Q ++ GE F+ HYNFPP+SVGE + RREIGHG LA+R + AV+P D Sbjct: 363 DDMQRMEGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSED 422 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 K+PY +RVVS+I ESNGSSSMAS+CG SL+LMDAGVP+KA VAGIAMGLVKEGD+Y +L+ Sbjct: 423 KWPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILT 482 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DI G EDH GDMDFKVAG+ GI+ALQMDIKI GIT +IM+ AL QA+ RL IL M + Sbjct: 483 DIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNE 542 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 I +PR ++SEFAPR +T++I DKI+D+IG GG VIR + E TG I++ED G V +A+ Sbjct: 543 VIQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVAS 602 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 +D E AK A++ I +ITA EVG+ Y G VTR+ DFGAFV I G +GL+HIS++A+ R+ Sbjct: 603 SDQEAAKKALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHRI 662 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE-------APAAEQGE 711 + V D L G +V VKVL VD RI+LS K ++ + A E AP E E Sbjct: 663 KDVKDELHEGDQVLVKVLAVD-GNRIKLSRKAVLKEQRAKMATEGGGDGGPAPEVEHSE 720 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 922 bits (2383), Expect = 0.0, Method: Composition-based stats. Identities = 365/709 (51%), Positives = 500/709 (70%), Gaps = 1/709 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + + Q+G T+TLETG +ARQA AV+ ++ +T V V + K GQDFFPLT Sbjct: 1 MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ +++GRIPG FF+RE +E ETL++RLIDRPIRPLFPEGF NE+ VIA V+S Sbjct: 61 VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + PDI+AMI ASAAL++SG+PF GPIGAARVGY + +Y+LNPT ++ LDLVVA Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T AV+MVESEA+ LSE+ MLGAV+F H+ Q VI+ I +L +++ K W+ P+ Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLS 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 A ++ L ++ AY++T+K R + ++ +++ A+ D+ +++ + Sbjct: 241 AAKTKLKKLVGKDITAAYKLTNKSARSSALNEARAKAKEAF-ADATPQDQMAAIKLVKKL 299 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +VR+ +L RIDGR+ +R + LPR HGSALFTRGETQ++ T TLGT Sbjct: 300 EAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKE 359 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 Q++D L G R + F+ HYNFPPYSVGE G G+P RRE+GHG+LA R + AV+P ++ Sbjct: 360 SEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEE 419 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 FPYT+R+ S+ITESNGSSSMA+VCG SLA+MDAGVPIK V+GIAMGL+ EG ++ V+SD Sbjct: 420 FPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD 479 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 ILGDEDHLGDMDFKVAG+ +GI+ +QMDIKI GIT+EI + AL QAK R HILG M +A Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 ++ R ++S APRI T+ + DKI+D+IG GG +IR + TG ++I+DDGTVKI+++ Sbjct: 540 LDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSS 599 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 D + + A I I AE EVG++YTGKV +VDFGAFV GGK+GLVH+S+I ++RVE Sbjct: 600 DTAQIEAARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659 Query: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 KV D L GQEV VKVLE+D +G++RLS++ +++ P E+ Sbjct: 660 KVADALSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELPDTRPPREE 708 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 328/697 (47%), Positives = 455/697 (65%), Gaps = 7/697 (1%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + +E G +A+QA A ++ DT V VT K+ + G DFFPLTV+Y+E Sbjct: 5 KYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYEE 64 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YA G+IPG F +REGR + TL ARLIDRPIRPLFP+GF NE+ V+AT++SV Sbjct: 65 KQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDNA 124 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 PD+ A+ GAS ALS+S IPF GP+ A VG ++ + ++NPT ++ ++S L L VAGT+ A Sbjct: 125 PDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGTKEA 184 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 ++MVE A + E+ M A+ F HE+ + ++ +++E G + + ++E + Sbjct: 185 IMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPILDEEIKKA 244 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V A +A + DK+ R Q+D + + E +E + ++ K VV Sbjct: 245 VVEFATPLFEEAVKNPDKKTREDQMDSSQKSVLQHFT-ESYPEEEKLIADVSDETMKAVV 303 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R L R+DGR+ D IR + G LPR HGS LFTRG+TQ L TLG + Q L Sbjct: 304 RKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQRL 363 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D L E ++ HYNFPPYS GET + P RREIGHG LA+R +LAV+P ++FPYT+ Sbjct: 364 DGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSEEEFPYTI 423 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 RVVSE+ ESNGSSSM SVCG++L+LM AGVPIKA V+GIAMGLVKEG+ + ++SDI G E Sbjct: 424 RVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIMSDIQGIE 483 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 D LGDMDFK+AG+ G++ALQMDIKI G+ +EI++ AL QA+ R+ IL M +AI+ P Sbjct: 484 DALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKMLEAIDKPN 543 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 ++S +AP++ ++I+PDKI++VIG GG I + +ETG I+IEDDG++ I ATD E A Sbjct: 544 EELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIMATDEEAA 603 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK------EGLVHISQIADKRV 659 K A +E I AE+EVG+ Y G V RI+DFGAFV I G EGLVHISQ+A++RV Sbjct: 604 KKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHISQLAEERV 663 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 KV D + +G ++ VKV E+DRQGR+ LS K + + Sbjct: 664 NKVRDVVDIGDQILVKVTEIDRQGRVNLSRKAVLKSA 700 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 335/695 (48%), Positives = 462/695 (66%), Gaps = 6/695 (0%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + T+TLE G A QA AV+V DT + T V K+ + DFFPLTV+Y+ Sbjct: 7 HSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVDYE 66 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAG+IPGSFF+REG+P++ L ARL DRP+RPLFPEG+ NEVQ+I T S++ Sbjct: 67 EKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDMVN 126 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 +P +A+IGASAAL++S IPF GP+GA +VGYI+ + +NP ++ S LDLVVAGT+ Sbjct: 127 DPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGTKD 186 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 AVLMVE+ A+ L ED ML A++ GH+ + + NELV+ AG+P+ ++ P PV+ +L Sbjct: 187 AVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTSLEE 246 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE----NELGEILHAI 300 + RL +A +K R AQ + +K E IA A++ + + + Sbjct: 247 AIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVSTAFENL 306 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 VR +L R+DGR IR + + G++PR HGS LFTRG+TQ L ATLG+ Sbjct: 307 LYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGSPA 366 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 + Q LD+L E T ++ HYNFPP+S GE +GSP+RR+IGHG LA+R +LAV+P ++ Sbjct: 367 EEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVLPSKEE 426 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-NYVVLS 479 FPYT+R+VSE SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ D + VL+ Sbjct: 427 FPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDGRWRVLT 486 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DI G EDHLGDMDFKVAG+ G++ LQ+DIK GIT EIM+ A QA+ RL+IL M Sbjct: 487 DIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYILDKMNA 546 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 I+ PR ++S +APRI T++INP+KI +IG GG +R +TE TG I+IE+DG V I+ Sbjct: 547 VISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDGRVYIST 606 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D A+ A+ +E +T EI+VG ++ GKV RI+ FGAFV + GK+G+VH+S++ RV Sbjct: 607 PDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDVGRV 666 Query: 660 EKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 E V D ++MG E+ V V+ ++ G++ LS + Sbjct: 667 ENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRALL 701 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 332/696 (47%), Positives = 460/696 (66%), Gaps = 7/696 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + +T+E G +A+ A AV+V DT + V + + G DFFPLTV+Y+ Sbjct: 7 HSVTVELAGRPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYE 66 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAG+IPGSFF+REGRP+E L +RL DRP+RPLFP+G+ N+VQV T +S + Sbjct: 67 EKMYAAGKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVN 126 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 +P +A+IGASAAL +S IPF P+GA ++G+I+ + +NP ++ S+LDLVVAGT Sbjct: 127 DPGPLAIIGASAALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTSE 186 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 AV+MVE+ A L+E +ML AV GHE Q VIQ EL ++ GKP+ ++ V+ +L Sbjct: 187 AVMMVEASAYELTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKPKKEFVAPVVDTSLQD 246 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL----LAEDETLDENELGEILHAI 300 + A R A +DK R A D ++++ + E+ + + A+ Sbjct: 247 EIKAWMGNRFLQALNNSDKAAREAATDSLRTDVLEQFSAGVAEEELAARVKAVTKNYDAL 306 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 K+ VR+ +L R+DGR+ + IR + V GVLPR HGS LFTRG+TQ L ATLG+ Sbjct: 307 VKDEVRASILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPG 366 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 D Q LD+L E T ++ HYNFP +S GE P+RR+IGHG+LA+R ++ V+P+ DK Sbjct: 367 DEQRLDDLGIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPVLPEKDK 426 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV--KEGDNYVVL 478 FPYT+R+VSE+ SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ KE + VL Sbjct: 427 FPYTMRLVSEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEAGQFSVL 486 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 +DI G ED LGDMDFKVAG+ GI+ALQMDIK GIT EIMQ A QA+ R+ IL M Sbjct: 487 TDIQGLEDALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVFILDKMN 546 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + IN R DIS+FAPRI T++I+P KI +IG GG IR++ E+TG I++EDDG V + Sbjct: 547 EIINTARNDISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDDGRVFVT 606 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 D + A+ A IE +T E +VG ++TGKV RI+ +GAFV + GK+G+VH+S++ +KR Sbjct: 607 TPDADGARMAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVSELDEKR 666 Query: 659 VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 VE V D +++G E+ V V++V+ G++ LS + Sbjct: 667 VENVEDVVKIGDELTVMVIDVEPGTGKLSLSRRAIL 702 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 342/708 (48%), Positives = 471/708 (66%), Gaps = 5/708 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 + + + +ETG MA+QA + +V +T V V + P FFPLTV Y Sbjct: 1 MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSP-LPFFPLTVEY 59 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +E+TYAAG+IPG F +REGRP + E L AR+IDR IRPLFPEGF NEVQV V+S + + Sbjct: 60 KEKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQE 119 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 + D++A++ AS AL+ S IPF GPI RVG + +VLNPT +L S L+LVVAG++ Sbjct: 120 NDADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSK 179 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 +++MVE + +SE+ +L ++ H+ + +I EL+ + P+ W E + Sbjct: 180 DSIVMVEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGIT 239 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 RV LA R+ +A DK R V+ K E LL E + ++G +L +E + Sbjct: 240 TRVKELASGRIREALNQKDKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGNLLGDVEYH 298 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 +RS+VL + R+DGR+KD +R + + T VLPR HGSALFTRG+TQALV ATLGTA+DAQ Sbjct: 299 ELRSQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQ 358 Query: 364 VLDELM--GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 LD + GE T +F+ HYNFPP+S GE + RREIGHG LA+R + V+PD F Sbjct: 359 RLDSIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADF 418 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 PYT+R+VS++ ESNGSSSMASVCG SL+L DAGVP+KAAVAG+AMGL+KEG+ Y +L+DI Sbjct: 419 PYTIRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAILTDI 478 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 LG EDHLGDMDFKVAG++DGI+++QMDIKIEG+ +IM+ AL+QAK RLHILG M++A+ Sbjct: 479 LGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEMDKAL 538 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 APR D+S++APRI T++I DKI ++IG G IR + +ETG + +EDDGTV IAA Sbjct: 539 AAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDGTVTIAAVG 598 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 G+ + A + + ITAE VG Y G V + FGAFV I G E L+H+S++ +RVEK Sbjct: 599 GDSMERAKQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSEMRWERVEK 658 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 D ++ G V VK+++ D +GR+RLS+K + + E P +E+ Sbjct: 659 PEDVVKKGDRVTVKLVDRDERGRLRLSMKALLPKPE-GMPDEPPQSER 705 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 901 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 319/698 (45%), Positives = 450/698 (64%), Gaps = 12/698 (1%) Query: 4 PIVRKFQ--YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 P RKF+ + +ETG M A + MV DT V V +K + G DFFPL+V Sbjct: 54 PHYRKFETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSV 113 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++E+ YAAGRIPGSF RREGRP E L +R++DRPIRPLFP+ N+V V TV+S++ Sbjct: 114 EFEEKLYAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLD 173 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 P + +I M GAS A+++S IP+NGPI VG ++ + VLNPT+++ + S L L +A Sbjct: 174 PDNSAEITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAA 233 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 +E ++M+E+ A + E M+ A+ GH + + ++ IN +V E GKP+ + P ++ Sbjct: 234 SEEKIVMIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKPKKTFTPVELDHG 293 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 L A V A + A DK R A + I AE L ++ I + ++ Sbjct: 294 LLADVYAKHLDEVKAAMDTDDKNVRDAALLPIMDAI----AAEHPELTAADIDLISYKLQ 349 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K VVR+ +L R+DGR + IR L G+LPR HGS +FTRG+TQ L TLG+ +D Sbjct: 350 KKVVRTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKD 409 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 AQ++D+L + ++ HYNFPPYSVGE SP RREIGHG LA+R ++ V+PD +F Sbjct: 410 AQLMDDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEF 469 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-----NYV 476 PYT+R VSE+ SNGS+S AS+CG++LALMDAGVPIKA VAGI+ GL+ +GD ++ Sbjct: 470 PYTIRCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWM 529 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG- 535 + DI G ED GDMDFKV G+R GI+A+QMDIK++G+T EI++ AL + + RL+IL Sbjct: 530 TMLDIQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDE 589 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 +++ I PR ++S +AP++ ++ I DKIKDVIGKGG VI+ + I+IE+DG V Sbjct: 590 IIKPVIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHV 649 Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 I+A D E AK AI I+ I + E+G +Y G+VTR+++FGAFV I GKEGLVHIS++ Sbjct: 650 FISAVDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLD 709 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 D RVE V D + +G + V V ++D+QGRI LS K+A Sbjct: 710 DHRVEHVEDVVAVGDPIFVMVTDIDQQGRINLSRKDAL 747 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 328/693 (47%), Positives = 449/693 (64%), Gaps = 2/693 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 G + ETG +ARQA AV+V +T VF T A DF PL V+YQE Sbjct: 5 TISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRVDYQE 64 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + +AG+ G F +REGRP+E E L++RLIDRPIRP+F EG+ NEVQ+++ V S + + Sbjct: 65 KFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINS 124 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+ +A+ GASAAL +S IP P+GA R+G+I+ Q+++NPT ++ K+SKLDL++AGTE A Sbjct: 125 PEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAGTEEA 184 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 VLM+E L+EDQ+L A+ GH + + Q + + + GKP+ + + L A Sbjct: 185 VLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKELYAD 244 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDET--LDENELGEILHAIEKN 303 V ++A L A RI +KQ+R + + L+ E+E + ++ + Sbjct: 245 VESIANPLLEKALRICEKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIKDVSSK 304 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 ++R +L R DGR IR +D+ +LPR HGS+LFTRGETQAL TLG A AQ Sbjct: 305 MMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGASMAQ 364 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 ++L GE + F Y+FPPYSVGE G VG+P RREIGHG+LA+R ++AV+P ++FPY Sbjct: 365 RFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPY 424 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 T+R+ S ITESNGSSSMA+VCG LALMDAGV IK VAGIAMGL+ E + +++LSDILG Sbjct: 425 TIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILSDILG 484 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED LGDMDFKV G ++GI+A QMDIK+EGIT EIM+VAL QAK R+HIL M Sbjct: 485 IEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLAVCPT 544 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 +G++S +APRI TI+I P KI VIG GG IRA+ E+TG I+I+D G V IAA D Sbjct: 545 YKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIAAIDLV 604 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + A I +TAEIE+GR+Y+GK I FG FV I GKEGL HIS+ R+ + Sbjct: 605 SIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNRINSLD 664 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 ++++ G + VKVL+++ +G+I+LS K + Sbjct: 665 EFVKQGDMLMVKVLDINERGQIKLSRKATLQSQ 697 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 896 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 348/697 (49%), Positives = 474/697 (68%), Gaps = 3/697 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N I + + + L TG +ARQA AV V M ++ + T V KAK G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +NY+E YAAG+IPG FF+ EG+PS+ E L++RLIDRPIRPLF FVNE V +V+S Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 +P+ DI+A+IGASAALSLS P+ + A++VG IN ++VLNPT LK S+LDLVVA Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT +V+MVESEA LLSE+QML AV FG E Q VI+ I EL +EA KP+ + Q Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQAL-YPA 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA--EDETLDENELGEILH 298 +L + L + A+ + KQER +D+I + ++ E++ ++ L Sbjct: 240 SLKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALK 299 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 AIE ++R+ +L RIDGR IR + G+LP HGSALFTRGETQ+LV+ T GT Sbjct: 300 AIESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGT 359 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 + D Q++D L GE + F+ +Y FPPYSV E + +P RRE+GHG+LA R + ++P+ Sbjct: 360 SLDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNK 419 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 +FPY++RVV+E TESNGSSSMA+VCG+SLALM AGVPIKA VAGIAMGLVKEG N+ VL Sbjct: 420 VQFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVL 479 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDILGDED+ GDMDFKVAG+ +GI+ALQMDIKI G+ +IM+VAL QA+ RLHIL M Sbjct: 480 SDILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMN 539 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + I+ P ++S+ AP TIKI+ DKI+D+IG GG VI+ + E +G I+I DDGTV + Sbjct: 540 KVISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVY 599 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 A+D +K K A+ +I+ I E E+G ++ G V +++D GAF+ G K+G VHIS+++ +R Sbjct: 600 ASDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGER 659 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 +E V+ L+ G V VK++ D +G+ +L+IK A + Sbjct: 660 IETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 343/732 (46%), Positives = 473/732 (64%), Gaps = 27/732 (3%) Query: 5 IVRKFQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA-KPGQDFFPLTVN 62 I ++ G +T+ETG MA+QA A +V M DT V TVV + P QDFFP+ V Sbjct: 3 IRKEIDLGDGKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVE 62 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E+ YAAG+ PG F +RE RPSE E L ARLIDR +RPLFP G+ + Q+I +V+S + Sbjct: 63 YREKYYAAGKFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQ 122 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + D++ I ASAA+ +S IPF + RVG IN ++V+NPT +EL +S +D+ + GT Sbjct: 123 LNDADVLGGIAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGGT 182 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + M+E E +SE +ML A+ FGHE + + +++ E KP+ + + L Sbjct: 183 NDTICMLEGEMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPDEL 242 Query: 243 NARVAALAEARLSD-AYRITDKQERYAQVDVIKSETIATLLAEDET-------------- 287 + EA L + AY K+ER + + +L + Sbjct: 243 KESIKEACEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPSKA 302 Query: 288 --LDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTR 345 L+E + +HAIEK V+R +L R+DGR+ + +R + + G++PR HGSALFTR Sbjct: 303 LYLNEQIISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALFTR 362 Query: 346 GETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGR 405 GETQALV TLGT +DAQ++D L+ + F+ HYNFPP+SVGETG VG RREIGHG Sbjct: 363 GETQALVVLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGHGN 422 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 LA+R V V+P +FPYT+R+VSEI ESNGSSSMASVCGA+LA MD GVP+ V+GIA Sbjct: 423 LAERAVKKVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIA 482 Query: 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 MGL+KE DNY VLSDILG+EDHLGDMDFKVAG+RDGI+A QMDIKI+G+ I++ AL Q Sbjct: 483 MGLIKEDDNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKALEQ 542 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 585 +K RLHIL M ++I PRG+I ++AP++ TI++ D I +IGKGG IR++TEETG Sbjct: 543 SKNGRLHILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEETGA 602 Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGG 644 I ++DDGTV I++ +GE A AI I+ + ++ EVG +Y GKV I D GAFV I Sbjct: 603 QINVDDDGTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEILPR 662 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ---GRIR--LSIKEATEQSQPA 699 +GLVHIS+IA +RV KV+D+L+ G V VK++++ + G+IR LSIK + PA Sbjct: 663 TDGLVHISEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSIKALLD--MPA 720 Query: 700 AAPEAPAAEQGE 711 + P+A++ + Sbjct: 721 ESANGPSAQEEQ 732 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 355/700 (50%), Positives = 473/700 (67%), Gaps = 5/700 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 +PI + G + + LETG +A QA AV + T V VT Q A + FFPL V Sbjct: 5 FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQALA-EEKGFFPLVV 63 Query: 62 NYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +YQE +YAAGRIPGS+FRRE GRPSE E L+ RLIDRP RPLFP+GF +EVQ+IATV+S Sbjct: 64 DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKE-SKLDLVV 179 + QV PD++A+ AS AL +S IPF+GPI RVGYI+ Q+VLNPT + + L+L Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 A + AV+MVE + +SED + A+ +GH+ Q ++ E+ ++AGKP+ + P N Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE--TLDENELGEIL 297 E L A V AEA L +A+ I DK R +K +A ++ + + GE+L Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGEVL 303 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK ++R+ + R+DGR+ +R + ++ GVLPRTHGS LF RGET+AL ATLG Sbjct: 304 EAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLG 363 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 + D Q ++ L GE F+ HYNFPPY VGE M+ P RR+IGHG LA+R VL V+P Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPG 423 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 ++FP+T+RVVS++ ESNGSSSMASVCGASLALMDAGVPIK VAGIAMGL+KEGD++++ Sbjct: 424 PEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDFLI 483 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILGDED +GDMDFKVAG+ DGI+ +QMDIKI GI + +M+ ALNQAK ARLHILG M Sbjct: 484 LTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRM 543 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + + APR ++S AP++ + INP+KI++VIG GG I+A+T ETG +I+IED G + I Sbjct: 544 AEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGKISI 603 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A E + A R+E +VG Y GKV +I+D G V I G EGLVH+SQ+ + Sbjct: 604 FAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQLDIE 663 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 RVE D ++MGQE+ VKVLE + GRIRLS K + + Sbjct: 664 RVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAVMNEEK 703 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 894 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 303/706 (42%), Positives = 450/706 (63%), Gaps = 3/706 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 V + T+ ++ + + +++S DT V + K + G DFFPL++ Y+E Sbjct: 4 VIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R Y+ G+IPG F +REG+PSE L AR IDRP+RPLFP+G+ N+VQV+ TV+SV+ Sbjct: 64 RLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNL 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+IVAM GAS AL +S IPF P+G+ VG ++ +++NP ++ ++S L+L V T+ Sbjct: 124 PNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKER 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 V+MVE+ A + ED M A++FG E+ + + E++K+ GK + + VNE L Sbjct: 184 VMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKKDEPDLYKVNEDLEEE 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V A + DA I D+ ER + I + +ED +++++ ++++ ++K +V Sbjct: 244 VRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQF-SEDYADNKSDIADVVYRVKKEIV 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R +L R+DGRE D +R + G LPR HG+ LFTRG TQ + TLG+ D Q+L Sbjct: 303 RGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQIL 362 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D + E + ++ HYNFP YS GE + P RREIGHG LA++ + ++P ++FPYT+ Sbjct: 363 DGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQFPYTI 422 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--NYVVLSDILG 483 R+VSE+ SNGS+S AS+CG++LAL+DAGVPIK AGIAMGLV D +L+DI G Sbjct: 423 RLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED GDMDFKV G+ GI+A+Q D KI G++ + ++ L +A+ ARL+IL M+Q I Sbjct: 483 LEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQCIPE 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 R ++S++AP+ + + I PDKI+DVIG GG VI + ETG I+I++DG + + + D E Sbjct: 543 HRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMSEDSE 602 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 AK A++ I+++T EI VG +Y GKVT+I +FGAFV I GKEGLVHIS++ RV KV Sbjct: 603 GAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRVNKVE 662 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 D + +G E+ VKV+E+D QGRI LS K+A + S+ E ++ Sbjct: 663 DIVSVGDEILVKVIEIDNQGRINLSRKDAIKDSEKKEQNEKDVQKK 708 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 324/693 (46%), Positives = 451/693 (65%), Gaps = 4/693 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + G+ + ETG +A+QA +V DT + T K + G DFFPL V+++E Sbjct: 4 IYRVRIGEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R Y+AG+IPG F +REGRPS+ L AR+IDR IR LF ++V V++TV+SV+ Sbjct: 64 RFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+I+A+ ASAAL++S IP+ GP+GA R+GYI+ V+NPT++ ++ S L+LVV+G Sbjct: 124 PNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVSGHSDG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 + MVE+ AQ + ED ++ A+ + + ++ + +E GK + P ++ Sbjct: 184 ITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVPEIDCW 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V ++ +++A I DK++R A + ++ E G + H + K ++ Sbjct: 244 VETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPDKGGYISGAVEHWV-KAMM 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA-RDAQV 364 R + + R DGR+ D +R L VLP+ HGSA+FTRGETQ+L TATLG D Q+ Sbjct: 303 RKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQL 362 Query: 365 LDELMG-ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 +D L E +FL HYNFPPYSVGE + P RREIGHG LA+R + ++PD +FPY Sbjct: 363 IDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDDTEFPY 422 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 VRVVS+I ESNGSSS AS+CG SLALM AGVPIK VAGIAMGL+KEGD+ VVL+DI G Sbjct: 423 VVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVLTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 EDH GDMDFKVAG+R+G++ALQMD K GIT+EI++ AL QAK AR+ IL VMEQAI+ Sbjct: 483 LEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVMEQAISN 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 P GD+S APR++T+ IN DKI+DVIG GG VIR +T+ETG + I+DDG + IA E Sbjct: 543 P-GDLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIAGASQE 601 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + AI+ I++I E++ G V+ GKVTR++ FGAFV + GKEGL+H+S+I+ RV KV Sbjct: 602 EVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHRVGKVE 661 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 D + G V V V E+D GRI L+ K+ Sbjct: 662 DVFKPGDPVLVMVREIDDMGRINLTRKKILADE 694 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 324/713 (45%), Positives = 440/713 (61%), Gaps = 6/713 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + + F+ ETG +A+QAT AV+V +T V VT V + K DFFPLTV Sbjct: 1 MEKVSLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEK-DYDFFPLTV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++ E+ YA GRIPG + +REG+ S+ TL AR+IDRPIRP F +GF EV V+AT +++ Sbjct: 60 DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAID 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVV 179 Q PD + + GASAAL + PF+GP R+ + ++++NPT +E + S L+L + Sbjct: 120 GQNPPDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTI 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT + MVE+ A ++E+ ML A+ FG E + E + +W + Sbjct: 180 AGTRDYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPD 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIA-TLLAEDETLDENELGEILH 298 ++ RV A +S A + DKQ R A+V+ +K+ A E++ +++ L Sbjct: 240 ASIAERVDAHF-DEMSAALKDADKQSRIAKVEELKAAIKANDFSEEEQAAWGSDIAAALK 298 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 ++EK+ +R V+ R DGR D IR L +R G LPR HGS LF RG+TQAL TLG Sbjct: 299 SLEKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGL 358 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +AQ LD + ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P Sbjct: 359 LNEAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSE 418 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D+FPY +RVVSEI ESNGSSSMAS CG+ LALMDAGVPIKA V+GIAMGL+KE D V+L Sbjct: 419 DEFPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVIL 478 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI G ED LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M Sbjct: 479 SDIQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHILNAML 538 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 I PR ++ + APRI TI I DKI++VIGKGG IR + + TG +IEI++DGTV IA Sbjct: 539 AEIPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGTVHIA 598 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 + D E + A +E I E EVG VY G V I FGAFV + K+GL+HIS++A+ R Sbjct: 599 SVDQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRMANGR 658 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 V KV D L MG V V+V+E+D + G++ L E + + + E+G Sbjct: 659 VSKVEDVLNMGDTVKVQVIEIDPKSGKVSLDRLEKPDAPEGSEPAHNGREERG 711 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 345/736 (46%), Positives = 473/736 (64%), Gaps = 27/736 (3%) Query: 1 MLNPIVRK-FQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK-AKPGQDFF 57 M++ I+ K G +++ETG MA+QA +V+V + DT V TVV KK P QD+F Sbjct: 1 MISMIINKAIDLGQGKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYF 60 Query: 58 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATV 117 PL V Y+E+ AAG+ PG FF+RE RPSE E L ARLIDR +RPLFP+G++ E Q+I TV Sbjct: 61 PLQVEYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV 120 Query: 118 VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 177 +S + + D++ + ASAA+ +S IPF+ + RVG IN ++++NP +EL S LD+ Sbjct: 121 ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDI 180 Query: 178 VVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 237 + GT + M+E E + +SE +ML A+ FGH+ + + NE+ E KP + P Sbjct: 181 CIGGTTDTICMLEGEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAV 240 Query: 238 VNEALNARVAALAEARLSD-AYRITDKQERYAQVDVIKSETIATLLAEDET--------- 287 + L V L E RL + AY K++R Q I E I + + + Sbjct: 241 IPSELTDLVRGLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQA 300 Query: 288 -------LDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGS 340 L+E+ + E +HA+EK V+R +L R+DGR + +R + + G++PR HGS Sbjct: 301 DPSKALCLNEHIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGS 360 Query: 341 ALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRRE 400 ALFTRGETQALVT TLGT +DAQ +D L F+ HYNFPP+SVGETG +GS RRE Sbjct: 361 ALFTRGETQALVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRRE 420 Query: 401 IGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAA 460 IGHG LA+R + V P +FPYTVR+VS+I ESNGSSSMASVCG +LALMD GVPI+ Sbjct: 421 IGHGNLAERAIKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKP 480 Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 V+GIAMGL+KEG NY VLSDILG+EDHLGDMDFKV+G+RDGI+A QMDIKI+G+ I++ Sbjct: 481 VSGIAMGLIKEGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILE 540 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL QA+ RLHIL ME+AI + R ++++FAPR+ TI++ D I +IGKGG IR++T Sbjct: 541 SALEQARRGRLHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSIT 600 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-FGAFV 639 EETG I IEDDGTV IA + E A+ I+ + A+ EVG +Y GKV + D GAFV Sbjct: 601 EETGAEINIEDDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFV 660 Query: 640 AIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDR-----QGRIRLSIKEAT 693 +GLVHIS+I+ +RV KV+D+L++G + VK+++V + + R LS++ Sbjct: 661 EFLPKTDGLVHISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVE 720 Query: 694 EQSQPAAAPEAPAAEQ 709 + A E Q Sbjct: 721 TDAANGAPQENNQENQ 736 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 881 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 323/694 (46%), Positives = 455/694 (65%), Gaps = 3/694 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 + K + + LETG++A+QA +V + + +T + TVV K+ DFFPLTVNY Sbjct: 1 MVTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNY 60 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 E+ YA G+IPG FF+RE +P + E LI+R+IDRP+RPLFPEGF NEVQ+I TV+SV+ Sbjct: 61 NEKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTD 120 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 + D +A+I +SAAL++S IPF GP+ A R+GY N +Y++NP EL S+LD++VAG++ Sbjct: 121 MPTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSK 180 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 A+LM+E EA+ +SE+ +GA+ H++ Q I NE+ G + + + + L Sbjct: 181 DAILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLV 240 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE-NELGEILHAIEK 302 V ++ A DK +R +D +E + + E +++ I H+IE+ Sbjct: 241 KMVTEYGRDKIESANYNPDKTKRNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIEE 300 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 +VR ++ R DGR D IR + T ++PR HGSALFTRG+TQ L TLG+ +DA Sbjct: 301 EIVREAIVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDA 360 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q++D++ G+ TF+ HYNFPP+SVGE G G+P RREIGHG LA+R AV+P DKFP Sbjct: 361 QLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFP 420 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVV+EI ESNGSSSMA++C ++++L+ AGVP+ A+VAGIAMGL D Y +L+DI Sbjct: 421 YTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDIQ 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDHLGDMDFKVAG+R GI+A Q+DIK+ GI+ +I++ AL QAK AR IL ++ I Sbjct: 481 GVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATIA 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 G+IS+FAP+ T+ +NP+KI+ +IG GG I+A+ EETG+ +EI+D G V I A D Sbjct: 541 NA-GEISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPDT 599 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 I+ I + EVG VY G V I DFGAFV I G EGL HIS++A K V V Sbjct: 600 PTLDKTIKLINSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMNV 659 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 + L++G EV VK+L+V + G+ LS K E+ Sbjct: 660 EEVLKIGDEVKVKILDV-KGGKYSLSRKALLEKP 692 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 336/706 (47%), Positives = 452/706 (64%), Gaps = 12/706 (1%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAA 70 G +++ETG +A+ A+ +V + DT + VT ++ + DF PLTV ++ER YA Sbjct: 10 LGGRELSIETGKLAKLASGSVTLRYGDTLLLVTA-QAREERSTLDFLPLTVEFEERHYAV 68 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 GRIPGSF RREGRP E L AR+ DR IRPLFP+G+ E QVI TV+S + Q PD++ Sbjct: 69 GRIPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQNAPDVLG 128 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 IGASAALSLS IP+NGP RVG I+ +YV+NPT D+L S LDLVVAGT AV MVE Sbjct: 129 AIGASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTRDAVNMVE 188 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE-PVNEALNARVAAL 249 + AQ +SE+ ++GA+ F H + Q V+ I + E G+ ++++ + ++ L ++ Sbjct: 189 AGAQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFLVDSDLSTDLVPELSEA 248 Query: 250 AEAR-LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENE----LGEILHAIEKNV 304 A A L DA T KQER A + ++ IA + + E E L +EK Sbjct: 249 ARAAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAFAKVEKQE 308 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 +R +L + R DGR +R + + LPR HGSA+FTRGETQ L TLGT RD + Sbjct: 309 LRRLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLGTERDELL 368 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D L GE D FL HYNFPPYS GE VG RRE+GHG LAKR + AV+P D FPY Sbjct: 369 VDNLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPAFDDFPYV 428 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +RVV E+ ESNGSSSMA+VC +L+LMDAGVPI+A VAG+AMGLV EG+ Y +L+DILG Sbjct: 429 IRVVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRILTDILGL 488 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 ED LGDMDFKV G+ +G++ALQMDIK+ G+T IM+ AL QA+ ARLHILG M + + AP Sbjct: 489 EDALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKMAEVLPAP 548 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 R ++S APRI T+KINP+ I VIG GG +R L E G + IE+DG ++I + DG Sbjct: 549 RPELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRIFSADGAA 607 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A+ ++IE +T E +VG Y G V + FGAFV + G++G++HISQ+++ RV V D Sbjct: 608 AEAVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSENRVNAVED 667 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 L +G + VK+ +D +G+I L + + AP P A + Sbjct: 668 VLNVGDRLRVKIANIDDRGKIDL----IRPELEGKIAPREPRAARA 709 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 420/728 (57%), Positives = 526/728 (72%), Gaps = 32/728 (4%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N IV++FQ+G H V +ETG +ARQA+ AV++ MDDT V TVVG K KPGQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y E+TYAAG+IPG FF+REGRPSE ETL +RLIDRP+RPLFPEGF NEVQV+ V+S+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 NP+V DI A++ ASAAL++SG+PFNGP+GAARVGY + QY+LNP + +L S LDLVVA Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AVLMVESEAQ LSE+ MLGAVV+GHEQ Q+ I I++LV+E GKP WDWQ P NE Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 AL A+V+ L A L AY++ K R ++ + + A L D E+ IL + Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +VR ++L GEPRIDGR+ +R +++R+ VLPR HGSALFTRGETQALV ATLGT Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 D Q++D L GE D F+ HYN PP++ GETG VGSPKRREIGHGRLAKR ++ V+P D+ Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV----------- 469 F YT+R+VSEITESNGSSSMASVCG LALMDAGVP+KA VAG+AMGL+ Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILXXXXXXXXXX 480 Query: 470 ---------------------KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 GDMDFKVAG+ + I+ALQMD Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDFKVAGTDNCITALQMD 540 Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 IK++GITKEIMQVAL QAK RLHILG M+ A+ R ++S APR+ T+KINP+KI+DV Sbjct: 541 IKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTELSAHAPRMITVKINPEKIRDV 600 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 IGKGGS I+ALT+ETG TI+I++DGT+ IA+T E A RRIE ITAE EVG++Y+G Sbjct: 601 IGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEAKRRIEGITAEAEVGKIYSGT 660 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS 688 V +++DFGA V I GK+GL+HIS+IA++RV +V+DY++ GQ V VK+L D +GR+RLS Sbjct: 661 VLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKEGQLVRVKLLSTDEKGRMRLS 720 Query: 689 IKEATEQS 696 IK A + Sbjct: 721 IKAAKAEE 728 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 312/693 (45%), Positives = 435/693 (62%), Gaps = 4/693 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 G + +TG +A+QA AAV+ S +T + T K + G DFFPL V+++E Sbjct: 4 TYTLNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDFEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R YAAG+IPG + +REGRPS+ L AR++DR IR LF + N+V V+ATV++V+ + Sbjct: 64 RYYAAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQKNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 +I+A+ AS AL++S IP++GP+GA R+G I+ + V+NPT+D + ES LDL VAG Sbjct: 124 ANILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHAGG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 + MVE+ A+ + E+ ++ A+ ++ + ++ ++ E G+P+ E ++ Sbjct: 184 ITMVEAGAREVPEELLVNALQTAQDEIKKIVAFQLQVRAEIGQPKAVLPAPLAIEEIDRW 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V + A I K+ER A + + +T A A+ E+ + + ++ K+ + Sbjct: 244 VKDNLREETAKAVMIHGKKERGAAISALVEKTTAHF-ADLYADAESYIAGAVESLVKSTM 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA-RDAQV 364 R+ + R DGR D IR + VLP+ HGSALFTRGETQALV TLG D Q+ Sbjct: 303 RTITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDDQI 362 Query: 365 LDELM-GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 +D L E FL HYNFPPYSVGE + P RREIGHG LA+R + ++P ++FPY Sbjct: 363 IDGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEEFPY 422 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 VRVVS+I ESNGSSS AS+CG SL++M AGVP+K VAGIAMGL+KEGD+ V+L+DI G Sbjct: 423 VVRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 EDH GDMDFKVAG+RDG++ALQMD K GIT+EI+ AL QA AR+ IL ME I Sbjct: 483 LEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETCIPE 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 P +S APRI T+ I+ DKI+DVIG GG VIR + +E+G I +EDDG+V I A + Sbjct: 543 PAP-LSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAVSPD 601 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + A + I +I E+E G + G VTR++ FGAFV + GKEGL+HIS+I+ K + KV Sbjct: 602 SVEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIGKVE 661 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 D G V V+V E+D Q RI LS + Sbjct: 662 DVFAPGDHVIVEVKEIDDQNRINLSRRRLLADP 694 >UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Tax=Treponema pallidum RepID=PNP_TREPS Length = 702 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 319/692 (46%), Positives = 442/692 (63%), Gaps = 2/692 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 G H + LE+G +ARQA +V + + TA+ TV + + G D+ PLTV++ Sbjct: 2 KHSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDF 61 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 E+ YA G++PG F +REGRP + E LI+RLIDRP+RPLF + F ++ V+ T +S + Sbjct: 62 NEKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMV 121 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 D++A++ +SAA++LS IPF+GP+ A RV Y+N YV+NPT ++ + +++VVAGT Sbjct: 122 HPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTR 181 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 + MVE A+ +SED MLGA+ E + + L GK + P Sbjct: 182 QGITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGR 241 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEI-LHAIEK 302 R+ LA RL+ A K ER + D +K + A+ E + L + H +E Sbjct: 242 DRIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEY 301 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 ++R +L RIDGR D IR + GVLPR HGSA+FTRGETQ+L TLG D Sbjct: 302 EILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDG 361 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 QV D++ G+R + F+ HYNFPP+SVGE G +G RREIGHG LA R + AV+PD ++FP Sbjct: 362 QVYDDIEGDRRENFILHYNFPPFSVGEIGRMG-VGRREIGHGCLAHRSLSAVIPDPEQFP 420 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YTVRVVSEI ESNGSSSMA+VC +L+L+ AGVPIK VAGIAMGL+ +G Y +LSDIL Sbjct: 421 YTVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDIL 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G+EDHLGDMDFKVAG+ DGI+ QMD+K+E ++ +M+ AL QA+ RLHIL VM Q I+ Sbjct: 481 GEEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTIS 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 AP IS +AP I + KI +KI +IG GG +++L+++ TI + DGTV ++ D Sbjct: 541 APSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDA 600 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 + A + +T + VGRVY G V RIV+FGAFV I GKEGL H+S+++ RV KV Sbjct: 601 QSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKV 660 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 +D LQ GQ + VK++++DR GR+ LS +A E Sbjct: 661 SDVLQEGQRICVKLIDIDRMGRLNLSYIDALE 692 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 336/715 (46%), Positives = 455/715 (63%), Gaps = 11/715 (1%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + V + + + +ETG +A+QA +V+V ++ V V KK G DFFPL V Sbjct: 1 MAKQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 NY+E+ YAAG+ PG F +REGRPS TL ARLIDRPIRP+F EGF NEVQVI TV+S + Sbjct: 60 NYEEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + + AM G+S ALS+S IPF+GPI +VGY++ Q ++NP+Q++ ++S L+L VAG Sbjct: 120 ENASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAG 179 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T+ A+ MVES A+ LSE+ ML A++ GHE + +I E+V GK + + + V+ Sbjct: 180 TKHAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAE 239 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSET---IATLLAEDETLDE--NELGEI 296 L A + A + L A ++ +K R A V+K + A+ E D ++ EI Sbjct: 240 LQAEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEI 299 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 L +E VR + + R DGR+ D IR LD LPR HGS LFTRG+TQAL TL Sbjct: 300 LEQMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTL 359 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416 + Q++D L E F+ HYNFP YSVGETG G+P RREIGHG L +R + V+P Sbjct: 360 APMGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLP 419 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 +++FPY +R+V+E+ ESNGSSS AS+C +LALM GVPIKA VAGIAMGL+ +G+NY Sbjct: 420 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYT 479 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 VL+DI G EDH GDMDFKVAG+RDGI+ALQMDIKI+GIT EI+ AL QAK AR IL V Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDV 539 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 +E I R +++ AP+I TIKI+ DKIK VIGKGG I + ETG I+I+++G V Sbjct: 540 IEATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVS 599 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 I ++D + A I + E +V VY KV RI FGAFV + + LVHIS++A Sbjct: 600 IYSSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAW 659 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 R +V D +++G EV VKV+++D +GRI S+K + P+ E+GE Sbjct: 660 TRTNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRP-----PKPEHDEKGE 709 >UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Tax=Aquificales RepID=PNP_PERMH Length = 709 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 316/694 (45%), Positives = 479/694 (69%), Gaps = 3/694 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + +++ETG A+Q+ AV+V +TAVFV V ++A+ DF PLTV+Y+E Sbjct: 11 KVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYRE 70 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 +TYA G+IPG F +REG+P+ E L++RLIDRPIRP+FP+GF N+V + A +S + + + Sbjct: 71 KTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDKYD 130 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 PD++A++GASAAL ++ PF GP+ RV ++ ++++NPT ++ S +D+VVAGT+ A Sbjct: 131 PDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTKDA 190 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 ++MVE ++ +SE+ +L A++F HE+ + + EL + GK + + + +E + A Sbjct: 191 IVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEEDERIKAE 250 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + ++ + +A+ I DK+ER ++ I E I + +E + E+ I I N++ Sbjct: 251 LESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKIEIPEEKEKKAEV--IYKEIVSNIM 308 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R +VL + RIDGR D IR + +RTG+ PR HGSA+FTRG+TQA V TLG + Q+ Sbjct: 309 REKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIE 368 Query: 366 DELMGER-TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 + + F+ HYNFPP+S GE +P RREIGHG LA+R + ++PD ++FPY Sbjct: 369 ESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEFPYV 428 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +RVVSEI ESNGS+SMA+VCGASL+L DAGVP+K VAGIAMGL+KE D+YV+L+DILGD Sbjct: 429 IRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDILGD 488 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 EDHLGDMDFKVAG+RDG++++QMDIKI+G++KEI+Q AL QAK AR+HIL +M +A+ P Sbjct: 489 EDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAMPQP 548 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 R ++S AP++ T+++ P+KI +IG G I+ + +ETG I+++ +G V+I A DGE Sbjct: 549 RPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVDGES 608 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A A IE + +IE+G VY GKVTR+ D+GAFV + GK L+H+SQI+ +R+ + Sbjct: 609 ADKAKEMIERLIMDIELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIRSAKE 668 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 +++G + VKV+++D GR ++S+KE E +P Sbjct: 669 KIKVGDILTVKVIDIDEMGRAKVSLKEVREGEEP 702 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 318/685 (46%), Positives = 453/685 (66%), Gaps = 3/685 (0%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGR 72 +T+ETG MA A AAV V+ +T V VT + G DFFPL V Y+E+ AAG+ Sbjct: 14 NRPITIETGKMALLANAAVTVTQGETVVLVTACSSA-PRAGIDFFPLMVAYREKYSAAGK 72 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 G F +RE RPSE E L +R+ DRP+RPLFP+GF +EVQ+ A V+S + +PD +AM+ Sbjct: 73 FLGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLSYDKVNDPDTLAML 132 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE 192 G+SAAL LS +PF GP+GA RVG ++ ++V NPT ++++ S L+L+ +GT +M+E + Sbjct: 133 GSSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIYSGTPGKTIMIEGD 192 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEA 252 LSE+++ A+ + + +V+ + EL GK + D+ + + E + A VA Sbjct: 193 CDELSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIEEDVKAAVATAISG 252 Query: 253 RLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAG 312 ++ +A + D+ ER A +D + + L A+ + EL E + + +R ++ Sbjct: 253 KIDEACLVIDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSHLIEMNIRRLIIEE 312 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R DGR + +R L ++PRTHGSALF RGETQALVT TLG A+ AQ + + G Sbjct: 313 GKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAETIRGRY 372 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 TF HYNFP +SVGE G + REIGHG LA+R + +MP +PYTVRV+SE+ Sbjct: 373 DKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMPA--DYPYTVRVISEVM 430 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 492 SNGS+SMAS+CG SLALMDAGVP+K AVAGI++GLV+E D YV+++DILG EDH GDMD Sbjct: 431 GSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMITDILGSEDHYGDMD 490 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG+RDGI+A Q+D+KI G++ ++M A+ + K AR+ IL VM+ +++ + +IS+ A Sbjct: 491 FKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDGCLSSAQEEISDHA 550 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRI 612 P++H +KINP+KI +IG GG I+A+ EETG I +EDDGTVK+ D K AI ++ Sbjct: 551 PQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFTADKTALKAAIEQV 610 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E E E G++Y G V + +FGAFV I GG +GL+HIS++AD RVEKVTD + G +V Sbjct: 611 ESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRVEKVTDVVNEGDKV 670 Query: 673 PVKVLEVDRQGRIRLSIKEATEQSQ 697 VK+LE+D +GR+RLS K A E+ + Sbjct: 671 SVKILEIDDRGRMRLSRKAALEEME 695 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 868 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 340/716 (47%), Positives = 455/716 (63%), Gaps = 25/716 (3%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 ++ V + + +E G +A+QA A M+ DT V T V + K DFFPL V Sbjct: 1 MSKQVFETTLAGKPLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKVGQT-DFFPLMV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 Y E+ YAAG+IPG FFRREGRPSE ETL +RLIDRP+RPLF +G+ NEVQV+ TV+S + Sbjct: 60 IYAEKQYAAGKIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 P+ + + AM+G+S AL +S IPF GPI A VG I+ Q+VLNP+ ++L S +DL+VAG Sbjct: 120 PEASSQMAAMLGSSIALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAG 179 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T+ A+ MVE+ A+ +SE+ ML A++FGHE + + + K G + + + +N+A Sbjct: 180 TKDAINMVEAGAKQVSEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELLSLNQA 239 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL---------------AEDE 286 + V A L A + DKQERY +D IK E +A A+ + Sbjct: 240 IFDEVFAYKGKELVKAVSLVDKQERYDVIDAIKDEVVAHFEQRNFWMTVDGKEVLDADQK 299 Query: 287 TLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG 346 N++ L I VR + + R DGR D IR L +LPRTHGSALFTRG Sbjct: 300 KELMNQVKVSLDRIVTKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRG 359 Query: 347 ETQALVTATLGTARDAQVLDELMGER-TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGR 405 +TQAL TLG+ + Q++D L E T F+ HYNFPP+SVGETG G+P RREIGHG Sbjct: 360 QTQALGIVTLGSLNENQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGA 419 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 L +R +L V+P D+FPY +RVVSEITESNGSSS A++C S+ALM AGVPIKA VAGIA Sbjct: 420 LGERALLQVLPSEDEFPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIA 479 Query: 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 MGL+ +G++Y +LSDI G EDH GDMDFKVAG++DGI+ALQMDIKI+GIT EIM+ AL Q Sbjct: 480 MGLIMDGEHYSILSDIQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQ 539 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE-TG 584 A+ RLHIL M I+ R ++S FAP++ I+INPDKI+DVIG GG +I + E+ Sbjct: 540 ARKGRLHILSHMNTVISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNN 599 Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-------FGA 637 I+IE DG V I TD IE + E +VG +Y KVTR++ G Sbjct: 600 VKIDIEQDGRVFIMHTDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGV 659 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 F I G EGLVHIS+ +R E + +++G ++ VKV+++D +GR+ LS K+A Sbjct: 660 FAEIFPGTEGLVHISKWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRKDAL 715 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 294/695 (42%), Positives = 423/695 (60%), Gaps = 7/695 (1%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + T+T++ G + QA A ++ DT V T K+ + G DFFPL+V Y+E Sbjct: 50 SYSMEIAGRTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYEE 109 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YA G+IPG F +REG+ SE L +R+IDRP+RPLFP+ + N+V + V+SV+P+ Sbjct: 110 KLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPECR 169 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P++VAM+GAS A +S IPF+GP ++G I+ ++V+NP+Q++ K L L VA T Sbjct: 170 PELVAMLGASIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVASTSQK 229 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 V+M+E A + E +M+ A+ HE Q +I+ IN++V E GKP+ ++ + + + Sbjct: 230 VIMIECGANEVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPKHSYESCAIPQEMFDA 289 Query: 246 VAALAE-ARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 + A+ + A DKQ R A +D I + +E L LGE ++ +K Sbjct: 290 MKAIVTPEEMEVAVFTDDKQTREANIDAITEKFKEAFADNEEWL--AILGEAVYQYQKKT 347 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 VR +L R DGR IR L ++PR HGSA+FTRG+TQ TL +AQ Sbjct: 348 VRKMILKDHKRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQK 407 Query: 365 LDELMGE-RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 +D L ++ HYNFP YSVGET P RREIGHG LA+R ++ V+P ++FPY Sbjct: 408 VDGLDENVTAKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFPY 467 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GDNYVVLSDI 481 +R VSE ESNGS+SMAS C + ++LM AGVPIK VAGI+ GLV D+Y+VL+DI Sbjct: 468 AIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDTDDDYIVLTDI 527 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV-MEQA 540 G ED GDMDFKV G+ +GI+A+QMDIKI G+T+ I++ A+ + + ARL I+ M+ A Sbjct: 528 QGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDTCMKPA 587 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 I PR ++ ++AP+I KI+P KI DV+G+ G I A+ EETG I+I DDG V I Sbjct: 588 IAEPRKEVGKYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDINDDGFVSICGV 647 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 + E + A++ I I + E G+++ GKV I +FGAF+ GKEG+VHIS+IA +R+ Sbjct: 648 ESEGMQKALKYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVHISKIAKERIN 707 Query: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 V D L +G V L D+ GRI SIK+ + Sbjct: 708 HVEDVLTLGDTVRCICLGKDKMGRISFSIKDCPAE 742 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 866 bits (2239), Expect = 0.0, Method: Composition-based stats. Identities = 301/706 (42%), Positives = 441/706 (62%), Gaps = 12/706 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G ++T ETG +AR A AV++SMD+T V TV K +DF PLT Sbjct: 3 VLETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTV-ASSKGDAARDFLPLT 61 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ +A G IP +F RREG P E E L RLIDRPIRPLFP GF +EVQV+A+V+S Sbjct: 62 VDYQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSS 121 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PD++A SAAL LS IP+ GPIG R+G I Q+++NP+ DEL S L+LV A Sbjct: 122 DGKQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYA 181 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T LM++ +A+ +SE + A+ H + ++ L AGK + ++ V++ Sbjct: 182 CTRDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSD 241 Query: 241 ALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 +V LAEA + + K ER +D+I + L E + L +++ Sbjct: 242 ITFEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVD 301 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K VVR R++A R+DGR + +R L +G LP HGS+LF+RG+TQ L T TLG Sbjct: 302 TVRKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 361 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 DAQ LD L+G T F+ HY+FPP+S+ E G RRE+GHG LA++ +LAV+P Sbjct: 362 PGDAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 421 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 ++FPYTVR+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAGI++GLV E D Sbjct: 422 EEFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNT 481 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +L+DILG EDHLGDMDFK+AG+R GI+A+Q+DIK GI +I+ L A RL Sbjct: 482 IKDYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRL 541 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL MEQ INAPR +PR+ T+K + D ++ ++G G++ R + EETG I + D Sbjct: 542 QILDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSD 601 Query: 592 DGTVKIAATDGEKAKHAIRRIEEIT-AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 GT+ + A + +++ I EIE+G +Y G VT + ++GAFV GG++GL+H Sbjct: 602 -GTLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 660 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 IS+++ + V +V+D + +GQ++ + + D +G I+LS+K + Sbjct: 661 ISELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRP 706 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 306/687 (44%), Positives = 441/687 (64%), Gaps = 9/687 (1%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 + + ++ G +A+Q+ +V V D+ V T + G DF PLTV YQE+ YA Sbjct: 9 ELFGRKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYA 68 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AG+IPG F +REG+PSE L ARLIDRPIRPLFP+ N+VQ+I TV+SV+ PD+ Sbjct: 69 AGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVT 128 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 +I AS AL++S IPF G + R+GY++ ++V+ PT+++L++S+LD+VVAG++ A+ MV Sbjct: 129 GIIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMV 188 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E EA+ ++E++M+ A++ H+ + +I+ E++ + + + + NE L + + Sbjct: 189 EGEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETLIGKFEEM 248 Query: 250 -AEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLD------ENELGEILHAIEK 302 +E L D I +K ER A++ + + + + + E D E+ L E K Sbjct: 249 ISEEELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLLKEYFDERTK 308 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 ++R ++ R DGR+ D IR + GVLPRTHGSALFTRGETQ+L TLG + Sbjct: 309 KLMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEE 368 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q++D +M E T F+ HYNFPP+SVGE + P RREIGHG LA+R + AV+P ++FP Sbjct: 369 QIVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFP 428 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 Y VRVVSEI ESNGSSSMA+VC SLALMDAGVPI+ VAG+AMGL+ E VVL+DI Sbjct: 429 YVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQ 488 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDH GDMDFKVAG+R+GI+A QMD K+ G+ +E+++ AL QAK AR+ IL +M I Sbjct: 489 GLEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIE 548 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATD 601 PR +S +AP I TI+I+P K+ ++IG GG VI+++ +E I I+D G V I D Sbjct: 549 KPRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKD 608 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 +K AI I+ IT +IEVG V+ GK+TRI +G FV + GK GL H S++ + + Sbjct: 609 QKKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAHSSKLGED-SKN 667 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLS 688 + ++G + V V+ +D GRI+L Sbjct: 668 FKEKYKIGDTIKVIVVNIDENGRIQLG 694 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 305/698 (43%), Positives = 456/698 (65%), Gaps = 7/698 (1%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + + + + G ++ ETG +A+QA +V+V +T V V +PG DFFPL Sbjct: 3 VQKVRVERKIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMC 61 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+ER AAG+ PG F +REGRPS E L +RL+DRPIRPL+P G+ +EVQV A V++ + Sbjct: 62 DYRERLAAAGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASD 121 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 Q + D++AMIG + AL +S +PF GP+G+ RVG ++ + V PT D+L++S+LD++V+G Sbjct: 122 LQNDGDVLAMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSG 181 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 + V M+E A + ED+M+ A+ F H+ + VI E K+ + +Q P ++ Sbjct: 182 SRDMVAMIEGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQ-SPEDDG 240 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE---NELGEILH 298 L R+ + A + + KQ R V ++ +A ++ + D N + H Sbjct: 241 LLQRLTDAYYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWH 300 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 +E+ VVR +LA R DGR+ + +R + T +LPR HGSALF RGETQAL+T LGT Sbjct: 301 DLEEKVVRDLILA-GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGT 359 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +RD Q +D L E + F+ YNFP YSVGE + P RREIGHG LA+R V V+P Sbjct: 360 SRDEQRVDGLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSA 419 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG-DNYVV 477 D FPYT+RV+S+ITESNGSSSMASVCGA+L LM +GVPI VAGI++GLV++G DN+ + Sbjct: 420 DDFPYTIRVISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCL 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 ++DILG EDH GDMDFK+AG+++GI+ +Q+D+K+ G+T +I++ L Q++ AR+ IL M Sbjct: 480 ITDILGTEDHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKM 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I PR +IS APR+ KI+PDKI +IG GG IR + E TG IE++D+GTV + Sbjct: 540 LTTIPRPRREISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLV 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+++ E A+ A+R++E TA +++G++Y G V+ I +FGAFV I G++GLVHIS+++ Sbjct: 600 ASSNKESAQEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGG 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 + + + +G + V V++VD R++LS ++A E+ Sbjct: 660 YISSLDQVIAVGDAMKVLVIDVDEHDRVKLSRRKALEE 697 >UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydiae/Verrucomicrobia group RepID=PNP_OPITP Length = 730 Score = 862 bits (2229), Expect = 0.0, Method: Composition-based stats. Identities = 325/716 (45%), Positives = 453/716 (63%), Gaps = 25/716 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 +T TG +A+ A AV V + +T VFVT + KPGQD+FPLTV+Y+E+ AAGR PG Sbjct: 14 ITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYREKYAAAGRFPG 73 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 +F+REGRPSE E L +RL DRP RPLFPEGF+NEVQ+I + S + DI + GAS Sbjct: 74 GYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVNESDISMVNGAS 133 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQL 195 AAL++S IP+NGPI A RV I ++V NPT D++ S LDL+ G E +LM+E A Sbjct: 134 AALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEKDMLMIEGSADQ 193 Query: 196 LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA-EARL 254 + E++ + A+ FGHE Q +++ I ELV + GKP+ + + + RL Sbjct: 194 IPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEARTIIERVVPTERL 253 Query: 255 SDAYRITDKQERYAQVDVIKSETIATLLAE--DETLDENELGEILHAIEKNVVRSRVLAG 312 +A +K R V ++K E A L AE + + +L + ++ R VL Sbjct: 254 IEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQYKAYRKTVLER 313 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE- 371 R DGR + IR L + GVLPR HGSA+F RG+TQ + TLG +DAQ LD L G Sbjct: 314 GVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKDAQDLDALTGGV 373 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 ++ +FL HYNFPP+SVGETG P RREIGHG LA+R ++ V+P D FPY++RVVSEI Sbjct: 374 KSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDVFPYSIRVVSEI 433 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------DNYVVLSDILGDE 485 SNGS+SMAS+CG L+LMDAGVPI A VAGI+ GL+ + + +V ++DILG+E Sbjct: 434 MASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASDGSIEKWVTITDILGEE 493 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 DH GDMDFK+AG+ GI+ Q+D+KI G+ EI + A+ QA+ AR+ IL VM ++ APR Sbjct: 494 DHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEILKVMLGSLPAPR 553 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI--EDDGTVKIAATDGE 603 D+S++APRI TI+I+P+KI +IG GG IR +TE TG I+I +D G V + + + E Sbjct: 554 ADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDSGKVFVYSNNAE 613 Query: 604 KAKHAIRRIEEITAE----------IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 AI+ I+ + IEVG++YTG+VT + +FG FV G EGL H+S+ Sbjct: 614 AMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECTPGNEGLCHVSE 673 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATE--QSQPAAAPEAPA 706 +AD RV + D ++MG + VK + +D + G++RLS K A + ++Q ++ APA Sbjct: 674 LADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRKAAMKELEAQKQSSEAAPA 729 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 332/727 (45%), Positives = 462/727 (63%), Gaps = 27/727 (3%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + V +ETG +ARQA +V+V+ T V VT K+ K GQDFFPLT Sbjct: 1 MFDKKTYILDVAGKEVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y E+ YA G+ PG F +RE +PS E LI+RLIDRPIRPLFPEGF N V V+ VVS Sbjct: 61 VDYIEKFYATGKFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSF 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + P+ +A IG S AL LS IPF+GP+ VGY+N +Y++NP +++ + L VA Sbjct: 121 DGINMPEDIATIGVSFALGLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLSVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT++A+ MVE+ A +SE++ML A++ GHE+ + + + ++ + +++ +E Sbjct: 181 GTKSAITMVEAGASEVSEEEMLNAIMLGHEEIKKICEQQETILNSLNITKMEFKGINYDE 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE---------------- 284 + + + L +A + K E+Y +D + ++T E Sbjct: 241 RVTTFLNK-YQGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEILSKEKTEEEKL 299 Query: 285 --------DETLDE--NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL 334 ++++DE E + H +EK +VR ++ + R DGR+ D IR L+ + VL Sbjct: 300 LELIGENKEKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEIRPLNAQIDVL 359 Query: 335 PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVG 394 HGSALFTRGETQALVTATLG+ D Q++D + GE F HYNFPP+SVGE G + Sbjct: 360 KMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPPFSVGEAGFMR 419 Query: 395 SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAG 454 +P RRE+GHG LA+R + AVMP +D FPYTVRVVSEITESNGSSS AS+CG SLALM AG Sbjct: 420 APGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAG 479 Query: 455 VPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 514 VPIK VAGIAMGL+KE +N+ VL+DI G EDHLGDMDFKVAG++ GI+A+QMDIKIEGI Sbjct: 480 VPIKGTVAGIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGI 539 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 KEIM++AL QA R+HI+ VME I R ++ E AP+I +KI+P KI +IG G Sbjct: 540 NKEIMEIALTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSKIAGLIGPAGK 599 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 +I+++ EETG I++EDDG V I D EK A + + T +E+ +VY G+VT++ Sbjct: 600 IIKSIIEETGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKVYKGRVTKLAK 659 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 FGAFV + G EGL+HIS+I+ KR+++V D L++ V VKV+ ++ + LS+K E Sbjct: 660 FGAFVELVPGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNKFSLSMKALIE 719 Query: 695 QSQPAAA 701 + + Sbjct: 720 KEEAKEE 726 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 333/713 (46%), Positives = 451/713 (63%), Gaps = 5/713 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + +V +F+ + LETG +A+QAT AV+V+ +T VT V K+ K DFFPLTV Sbjct: 1 MKKVVEEFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEK-DYDFFPLTV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++ E+ YA GRIPG + +REG+ S+ TL AR+IDRPIRP FP+GF EV ++AT + Sbjct: 60 DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVAD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIN--DQYVLNPTQDELKESKLDLVV 179 Q PD + + GASAAL G PF+GP R+ ++++NPT E +ES L+L + Sbjct: 120 GQNPPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTI 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT + MVE+ A +SE+ ML A+ FG E + + ++ + Sbjct: 180 AGTADYISMVEAGANEVSEEDMLAAMNFGQEAIAAFCDAQQRFLDQLDCTPLEYAIHTAD 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE-TLDENELGEILH 298 + RV A EA ++ A R DK R A+V+ +K+ + +++E +++ L Sbjct: 240 PRIAERVNA-HEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAAALK 298 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 A+EK +R ++ R+DGR D IR L +R G LPR HGS LF RG+TQAL TLGT Sbjct: 299 ALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGT 358 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 R+ Q LD + ++ YNFPPY GE G +G+PKRREIGHG LA+R ++ V+P Sbjct: 359 LREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSE 418 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D FPY +RVVSEI ESNGSSSMAS CG++LALMDAGVPI A V+GIAMGL+KEGD V+L Sbjct: 419 DDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVIL 478 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI G ED LGDMDFKV G+ GI+ALQMD K G++ EI+ AL QAK R IL M Sbjct: 479 SDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILSAML 538 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + I+ PR ++SEFAPRI TIKI +KI+DVIG GG VIR L +ETG TIE+E+DGTV IA Sbjct: 539 EQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTVHIA 598 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 A +G + A + I +I E EVG +Y G+V I DFGAFV + GK+GL+HIS++A+ R Sbjct: 599 AVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMANGR 658 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V +V D L +G V V+V+EV G+I L + + Q ++ P + + Sbjct: 659 VGQVEDVLNLGDAVKVEVIEVGDNGKISLDRIDKPDAPQGSSRPRRDIDSRSD 711 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 335/718 (46%), Positives = 469/718 (65%), Gaps = 15/718 (2%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 + N + G + ETG +A QA AV + T V VT Q + FFPLT Sbjct: 4 IFNAMRVTATVGGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDR-DLGFFPLT 62 Query: 61 VNYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 V Y E+ YAAGRIPGSFFRRE GRPSE ETL++RLIDRPIRPLFP+G +EVQV+A V+S Sbjct: 63 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVIS 122 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + + D++A+ GAS AL LS IPF+GP+ AR+G I+ Q+V+NPT E++ S L++V+ Sbjct: 123 SDQNNDSDVLAVTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 A + AV+MVE EA + E ++ A+ +GH++ Q +I +L + AGK + ++ + Sbjct: 183 AASRDAVVMVEGEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKAKREFTAPVED 242 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE----DETLDENELGE 295 L ARVAALA A L A RI +K R +K + + L+A+ ++T +G+ Sbjct: 243 ADLAARVAALATADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPLRAVGD 302 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 IL A+EK +VR R++ RIDGR+ +R + + G+LPR HGSALF RGET++LV AT Sbjct: 303 ILSALEKRIVRERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVAT 362 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LG++ D Q +D L G+ T F+ HYNF PY VGE V RREIGHG LA++ + ++ Sbjct: 363 LGSSTDEQRMDSLTGDVTKRFMLHYNFAPYCVGEVKPVR-VSRREIGHGALAEKALRPIL 421 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 P + FP+T+RVV+E ESNGSSSMA+VCG L+LMDAGVPI A VAG+AMGL+KEGD Y Sbjct: 422 PLGEDFPFTLRVVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMGLIKEGDQY 481 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 VVL+DILGDED LGDMDFK+AG+ +GI+A+QMDIK++G+ ++M A+ QA+ ARLHILG Sbjct: 482 VVLTDILGDEDALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQARDARLHILG 541 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 M + + APR ++S +AP+ + +NPD I+ +IG GG I+A+T TG +I+IED G V Sbjct: 542 EMGKVLEAPRAELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASIDIEDSGRV 601 Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 I A E + A ++ ++G+ YTGKV ++++ GA V I E LVHISQ+ Sbjct: 602 SIFAPTLEAMEMAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEALVHISQLD 661 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ-------SQPAAAPEAPA 706 RVE+ +D ++G+++ VKV+E++ RIR S K + + A P P Sbjct: 662 TNRVEQASDVARLGEDMVVKVIEINGD-RIRASRKAVLLEEQGIEWKPEDTARPSGPR 718 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 851 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 311/684 (45%), Positives = 429/684 (62%), Gaps = 11/684 (1%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 + +E G +A+QA AV+ + DT V T V A G DF PLTV +QER YA Sbjct: 7 EILGREFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEFQERFYA 66 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AG+IPG F +REG+PSE L AR IDRPIRPLFP+ NEVQV+ TV+S + PDIV Sbjct: 67 AGKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSVNTPDIV 126 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 + AS AL++S IPFNG + A RVG ++ + VL PT+D+L++S LD+VVAGTE + MV Sbjct: 127 GVFAASLALNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTEDTITMV 186 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E EA+ +SE QML A++ H+ + +I E++ + + + E + + L Sbjct: 187 EGEAKEVSESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIEKEFSQL 246 Query: 250 AEA-RLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV---- 304 + L + I K+ R + + L A T EL +L + Sbjct: 247 LDGNELRERLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYEEALKYK 306 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 +R ++ R+D R+ IR + TG+LPR HGSALFTRGETQ+L TLG D Q+ Sbjct: 307 MRRIIVEEGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGAPMDEQI 366 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D L+ E T F+ HYNFPP+S GE + P RREIGHG LA+R + V+PD D+FPYT Sbjct: 367 IDSLLEEGTKRFMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDEDRFPYT 426 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +R+VSEI ESNGSSSMA+VC SLALMDAGVPI VAG+AMGL+ E D+ +VL+DILG Sbjct: 427 IRIVSEILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVLTDILGA 486 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 EDH GDMDFKVAG+RDGI+A QMD K+ G++ ++++ ALNQAK ARL++L + + I+ P Sbjct: 487 EDHWGDMDFKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLYETISKP 546 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATDGE 603 R +S++AP I I I+P K+ ++IG GG +I+AL ++ I ++D G V + + E Sbjct: 547 RDTLSKYAPVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSVIGGNEE 606 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K AI +I I EI VG V++GKVTRI FG FV I GK GL+H S++ + + Sbjct: 607 KVDAAIEQINSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKL----ITDLK 662 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRL 687 ++G+ + VKV +D GR++L Sbjct: 663 TV-KIGETMRVKVSNIDNLGRLQL 685 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 849 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 297/714 (41%), Positives = 433/714 (60%), Gaps = 31/714 (4%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + K + G+ + ETG MA+QA +V+ + ++V TV + DF PL+V Y E Sbjct: 4 ILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYNE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YAAG+IPG F +REG+P + E L++RLIDRP+RPLF + F E+QVI T ++ + Sbjct: 64 KYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 PDIV M A A+ LS IPFNGPI A R+ Y+N ++++NP+ +E+ +S LD+VVAG+ Sbjct: 124 PDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLNG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG-KPRWDWQPEPVNEALNA 244 + MVE A +SED +L A+ HE + + E + G K + E Sbjct: 184 ITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFKE 243 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL--LAEDETLDENELGEILHAIEK 302 + A L +A + K R + ++++++ L + + +E+ + EK Sbjct: 244 ELRDFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFEK 303 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 +VR+ +L + R DGR + IR + +L RTHGS+LFTRGETQAL TLGT+ D Sbjct: 304 EIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSIDE 363 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q++D++ G++ F+ HYNFPP+SVGETG + RREIGHG LA+R + +++P + FP Sbjct: 364 QIMDDIDGDKRLNFMLHYNFPPFSVGETGRLM-TGRREIGHGHLAQRALESMIPGKNDFP 422 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVVSEI ESNGSSSMA+VC S++LM AGVP+K VAGIAMGL+ EGD YVVLSDIL Sbjct: 423 YTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDIL 482 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G+EDHLGDMDFKVAG+ +GI+ QMDIKIE +TK++M+ AL QA+ R+HIL +M I+ Sbjct: 483 GEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVIS 542 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 R IS++AP+I ++I+ DKI VIG G ++A+T+E ++IE +G + + D Sbjct: 543 NSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDDD 602 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI------SQIAD 656 K + A +IE I E +VG +Y G V +I FGAF+ + KEG + S+ Sbjct: 603 FKMQKAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYGS 662 Query: 657 KRVEKVTDY---------------------LQMGQEVPVKVLEVDRQGRIRLSI 689 R Y L+ GQ + V+++++D+ G+I L I Sbjct: 663 GRFGHGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 332/719 (46%), Positives = 482/719 (67%), Gaps = 13/719 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + + ++G ++T+E+G +ARQA AV+V T+V TVV +K+K DF PLT Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVV-SQKSKEAVDFLPLT 59 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V + ++YA G+IPG FF+REG+PS+ ETLI+R+IDR IRPLFP GF +EV V+ ++S Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLV 178 + P+ VA+IGASAAL++SGIPF+ P+ AR+GYI + Y+LNP+ DEL S LD+ Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK-PRWDWQPEP 237 A T+ ++LMVESEA L+E +MLGA+ FGHE + +I+ I E +EA K ++ P Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCD 239 Query: 238 VNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE------- 290 ++ +++ + + + R AY +K+ R A++D +++ L + + E Sbjct: 240 LSTIIDS-IGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIA 298 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 ++ + E+++VR RVL + RIDGR D IR +++ ++ + HGSALFTRG+TQA Sbjct: 299 QDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQA 358 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 LV LGT +D Q++D G++ + FL HYNFPPY+VGE + P RREIGHG+LA R Sbjct: 359 LVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 + V+P FPYT+RVVSEITES+GSSSMA+VCGASLALMD GVP+K++VAGIAMGL+K Sbjct: 419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478 Query: 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 EGD Y +LSDILGDED+LGDMDFKVAG+R+GI+ALQMD+K++GI ++ AL+QAK R Sbjct: 479 EGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGR 538 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 I+ M++ I RG + E PR+ ++ I+ KIK+VIG GG +R + E+TG IEI Sbjct: 539 FFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEIS 598 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 DGTV I A E + A I I +E EVG++Y+G+V + +GAFV G ++GLVH Sbjct: 599 QDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVH 658 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 IS+I ++ + V D L +G +V V V+++D+ I+LS++ +++ E A ++ Sbjct: 659 ISEIRNEHINAVADVLAVGDKVKVLVIDMDKD-HIQLSMRRIDQETGDQVDCELYAPQR 716 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 298/714 (41%), Positives = 448/714 (62%), Gaps = 12/714 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G V+ ETG +AR A +V++ MD+T V TV K P +DF PLT Sbjct: 49 ILESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSP-RDFLPLT 107 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ YA G IP ++ RREG P E E L RLIDRPIRPLFP GF +EVQ++A+V+S Sbjct: 108 VDYQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSS 167 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PDI+A +SAAL LS +P+ GPIG R+G I Q+V+NPT DEL S L+L+ A Sbjct: 168 DGKQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYA 227 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T +M++ +++ +SE + A+ H + + L ++AGK + +++ +++ Sbjct: 228 CTRDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSD 287 Query: 241 ALNARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 +VA LA R+ + K ER +D I + E + + L + + Sbjct: 288 KTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVD 347 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K VVRSR+++ R+DGR D +R + + LP HGSALF+RG+TQ L T TLG Sbjct: 348 TVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGA 407 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +AQ LD L+G F+ HY+FPPY E G G RRE+GHG LA++ +LAV+P Sbjct: 408 PAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPE 467 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 + FPYT+R+ SE+ S+GS+SMASVCG S+ALMDAG+P++A VAG+++GL+ + D Sbjct: 468 EAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGE 527 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +++DILG EDHLGDMDFK+AG+RDG++A+Q+DIK GI +I+ +L A+ ARL Sbjct: 528 IKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARL 587 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL ME+ IN+PRG ++PR+ T+K + D ++ +IG G + R + ETG + I D Sbjct: 588 QILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI-D 646 Query: 592 DGTVKIAATDGEKAKHAIRRIEEIT-AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 +GT+ I A + + + A +++ I E+ VG VY G V+ I ++GAFV GG++GL+H Sbjct: 647 NGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLH 706 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEA 704 +S+++ + V KV+D L +GQ + +E D +G I+LS K + + A +A Sbjct: 707 MSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKRKPASDA 760 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 302/695 (43%), Positives = 427/695 (61%), Gaps = 2/695 (0%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 I V ++G +A QA AV+ DT TV+ + K DFFPLTV+ Sbjct: 5 KKIEVTGTVAGKKVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVD 64 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E++YA G+IPG FF++EGRP++ E L ARLIDR IRP+FP+G NEVQV+ +++ + Sbjct: 65 YEEKSYAVGKIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADM 124 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + PDIVA+ G +AAL++S IP I RVGYI+ +YVLNPT E+ ES+LDLVVAGT Sbjct: 125 ENPPDIVALNGTAAALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGT 184 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 +++M+E+ A + + ++G + F E + +I I EL ++ G+P+ + + Sbjct: 185 RDSIVMIEAGAAEVDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSFPQEQ 244 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 302 + E R A KQER V +K +L LDE + +EK Sbjct: 245 LDFMRN-HEDRFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGEVEK 303 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 VVR+ + + R+DGR D IR L + VLP+ HGS LF RG+TQ L T TLG+ D Sbjct: 304 EVVRAYMKSTRKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDV 363 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q +D + E F+ Y+FPP+S GE P RREIGHG L +R + ++P + FP Sbjct: 364 QFIDAIGLEEFKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEEVFP 423 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVVSE+ ESNGS+SMAS C +S+ALM AGVP+ V GIAMGL++ D VVL+DI Sbjct: 424 YTIRVVSEVLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTDIQ 483 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDHLGDMDFKVAG+R+GI+ALQ+D+K++GI+ E + A++QA+ AR IL V+ AI Sbjct: 484 GLEDHLGDMDFKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDAIP 543 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 +PR +SE APRI I+I DKI +VIG GG ++ +T+ETG TI+I +DG + Sbjct: 544 SPRP-LSETAPRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKGLTD 602 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E A +++E I + EVG T +V R+ A V I GK GL+H+S++++ R+ + Sbjct: 603 ESVNMAKQQVEMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRIRSL 662 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 D L +GQ + V V E D +GR+R S KE ++ Sbjct: 663 EDVLSVGQTIKVWVKEKDGEGRLRFSAKEKKSEAH 697 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 317/700 (45%), Positives = 447/700 (63%), Gaps = 6/700 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L + +F+ + ETG +A+QAT AV+V +T V VT V K+ K DFFPLT Sbjct: 30 ILEKVSLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEK-DYDFFPLT 88 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V++ E+ YA GRIPG + +REGR S+ TL AR++DRPIRP F EGF EV V+AT ++ Sbjct: 89 VDFMEKMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAI 148 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLV 178 + + PD + + GASAAL ++ PF+GP+ R+ + ++++NPT E + S L+L Sbjct: 149 DGENAPDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELT 208 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 +AGT+ + MVE+ A + E+ ML A+ FG E + E + + +W Sbjct: 209 IAGTKDYISMVEAGADQVGEEDMLAAMNFGQEAIAAFCEKQAEFLSMVDIQKREWPIHVP 268 Query: 239 NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE-TLDENELGEIL 297 + ++ RV A +S A + DKQ R A+V+ +K+ +++E +++ Sbjct: 269 DASIAERVNA-HYDAMSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDIAAAC 327 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK+ +R ++ R DGR + IR L +R G LPR HGS LF RG+TQ + ATLG Sbjct: 328 KALEKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLG 387 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 +AQ LD + + T ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P+ Sbjct: 388 LLNEAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPN 447 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 D+FPY++RVVSE+ ESNGSSSMAS CG+ LALMDAGVPIKA V+G+AMGL+KE D V+ Sbjct: 448 EDEFPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVI 507 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G ED LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHILSAM 567 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I APR ++ + APRI TIKI +KI++VIGKGG IR + + TG +IEI++DGTV I Sbjct: 568 LDEIAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDGTVHI 627 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 AA D A++ +++I E EVG VY G V I FGAFV + K+GL+HIS++A+ Sbjct: 628 AAVDQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISRMANG 687 Query: 658 RVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQS 696 RV +V D L +G V V+V+E+D + G++ L E + Sbjct: 688 RVGQVEDVLNLGDTVKVEVIEIDSKTGKVSLDRLEKPDAP 727 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 326/713 (45%), Positives = 462/713 (64%), Gaps = 14/713 (1%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + L TG A QA +VM+ DTAV VT + + G DF PL +Y+E Sbjct: 5 TQSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTAT-RSTGREGIDFLPLICDYEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R YAAGRIPGSF RREGRP E TLIARLIDRP+RPLFP +++Q++AT +S++ +V Sbjct: 64 RLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLDERVP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 D++A+ GAS A L+ IPF GP+ A RVG + D +VLNP+ E++ LDLVVAGT Sbjct: 124 ADVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGTPDG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA--LN 243 V+MVE+ A L + ++ A+ FG+E +I+ ++K+AG + +P ++ L+ Sbjct: 184 VVMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQVQPEPPTQDQDTKLS 243 Query: 244 ARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDE--------TLDENEL 293 + + + + + K ER +++D IK++T + + E + L Sbjct: 244 TYLEKNCSKSIGEVLKQFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNANSKVL 303 Query: 294 GEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGETQALV 352 A+ K ++R +++ R+DGR+ D +R + GVLP R HGS LF RG TQ L Sbjct: 304 SNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLTQVLS 363 Query: 353 TATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL 412 TATLGT DAQ +D+L T+L HYNFPPYSVGET + SP RRE+GHG LA+R ++ Sbjct: 364 TATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAERAII 423 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG 472 V+P D FPY +RVVSE+ SNGS+SM SVCG++LALMDAGVP+KA V+G AMGL+KE Sbjct: 424 PVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKED 483 Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 +L+DI G ED LGDMDFKVAG++DGI+ALQMD+KI G+ + + A+NQA+ AR+H Sbjct: 484 AEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARPARIH 543 Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD 592 IL M +AI+APR +S APR+ + +I+P+ I VIG GG I+ +TE T T I+IED Sbjct: 544 ILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIEDG 603 Query: 593 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 G V IA+ DG A+ A R IE +T ++ G V+TG +TRI+ GAFV I GKEG++HIS Sbjct: 604 GIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGMIHIS 663 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAP 705 Q+++ RVEKV D +++G +V V++ E+D +GRI L+++ + + + AP Sbjct: 664 QLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQNGEETQSEPAP 716 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 334/710 (47%), Positives = 451/710 (63%), Gaps = 24/710 (3%) Query: 1 MLNPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL 59 ML+P +T ETG +A+QA + + M D V TV ++ DFFPL Sbjct: 13 MLDPKEVSVNLPDGRVITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE--KDGDFFPL 70 Query: 60 TVNYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 TV Y+E++YAAGR+PG + +RE GRPS+ E L AR+IDRPIRP+FPE F EVQVI V+ Sbjct: 71 TVEYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVL 130 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 S + + PD++ + AS ++ LS +PF + A RV ++ Q ++ PT D++ + LDLV Sbjct: 131 SSDKKFAPDVLGVSAASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLV 190 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 VAGTE +V MVE A +SED M+GA++ GHE + + + ELV KP+ + +P+ V Sbjct: 191 VAGTEDSVCMVEGGAYEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFV 250 Query: 239 NEA---LNARVAALAEARL-SDAYRITDKQERYAQVDVIKSETIA-----TLLAEDETLD 289 E L A V + L D + K + Y + + + + ++ E E + Sbjct: 251 GEEHDKLVATVKDVVWDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQN 310 Query: 290 ---ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG 346 + I +E+ +R +L R+DGR +R +++ GVLPR HGSA+F RG Sbjct: 311 AQLAADAKGIFSDLERTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRG 370 Query: 347 ETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 ETQ LV TLGT D Q + L GE +++ HYNFPP+SVGE +G RREIGHG L Sbjct: 371 ETQGLVICTLGTKADEQRFESLQGEGAKSYMLHYNFPPFSVGECKKLG-LSRREIGHGHL 429 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 A+R + AV+P + FPYT+RVVSEI ESNGSSSMASVCG L+LMDAGVPIKA VAGIAM Sbjct: 430 AERSLAAVLPLPEDFPYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAM 489 Query: 467 GLV------KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 GL+ KEG +LSDI G EDHLGDMDFKV G+ +GI+A QMDIKI GIT E+M+ Sbjct: 490 GLISEKGSVKEGGKIKILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMR 549 Query: 521 VALNQAKGARLHILGVMEQ-AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL 579 AL QA+ R+HILG M + + APR +SE AP + ++I KI+DVIG GGSVI+ + Sbjct: 550 EALEQARQGRIHILGRMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGM 609 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +TG TI I+D+G + IAA G+ + R IEE+TAE E GR Y GKV I FGAFV Sbjct: 610 QAQTGCTINIDDNGNIDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFV 669 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 I G++GLVHIS++AD+RV+KV D + +G EV V L VD +G+++LS+ Sbjct: 670 EILPGRDGLVHISELADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 301/766 (39%), Positives = 434/766 (56%), Gaps = 60/766 (7%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N + K +G + +ETG+M RQA++AV V+ +T V+ +V DF PL V+ Sbjct: 86 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G FF+REGR + E LI RLIDRP+RP P+GF NE Q+++ V+S + Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 PD +A+ A A++LS +P I RVG I ++++NPT E++ES+LDL +AGT Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + A+L +E + L E+ +L AV G + Q I L K+ GKP+ L Sbjct: 266 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 325 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN----------- 291 V LA L+ A +I K R + ++ + + L + +DE Sbjct: 326 YKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 385 Query: 292 --------------------------------------ELGEILHAIEKNVVRSRVLAGE 313 ++ + + ++R R++ G Sbjct: 386 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 445 Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG-ER 372 R DGR D IR ++ R G+LPR HGS LFTRGETQAL TLG + AQ +D L G + Sbjct: 446 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 505 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 F Y FPP SVGE G +G+P RREIGHG LA+R + ++P D FPYT+RV S + Sbjct: 506 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 565 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY------VVLSDILGDED 486 ESNGSSSMASVCG LAL DAGVP+K +VAGIAMG+V + + + ++LSDI G ED Sbjct: 566 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 625 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 GDMDFKVAG+ DG++A QMDIK+ GIT EIM+ AL QAK R HIL M + P Sbjct: 626 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 685 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT-IEIEDDGTVKIAATDGEKA 605 +S++AP I +K++P K+ +IG GG ++++ EE+G I+++DDGTVKI A D Sbjct: 686 SLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 745 Query: 606 KHAIRRIEEITAEIEVGRVYT-GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + A I +T VG +Y ++ + +GAFV I G+EGL HIS+++ + + K D Sbjct: 746 ERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 805 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ--PAAAPEAPAAE 708 ++G + VK++EV+ +G++RLS++ +S+ + + PA + Sbjct: 806 AYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPAGD 851 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 825 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 314/705 (44%), Positives = 458/705 (64%), Gaps = 11/705 (1%) Query: 3 NPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + ++ +++LETG +A+QA +V+ + DT V T +FFPLTV Sbjct: 4 EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNES-NFFPLTV 62 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+E+ A G++PG F +REGRP++ ETL +RLIDR IRPLFP+GF ++V V+ V+S Sbjct: 63 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + D++A +G+SAAL LSG PF GP RVG ++ Y++NPT + +ES +DLVVAG Sbjct: 123 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 182 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR-WDWQPEPVNE 240 E A++MVE EA+ +SE+ M+ A+ H + + + + LV++AG+P ++W+ + V E Sbjct: 183 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEADRVPE 242 Query: 241 ALNARVAALAEARLSDAYRIT-DKQERYAQVDVIKSETIATLLAED----ETLDENELGE 295 L R+ +++D K+ + + +K + + +L + E +++ + Sbjct: 243 QLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDIRD 302 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 + +EK +R+ ++ RIDGR++ +R L + G LPR HGSA+FTRGETQ L + T Sbjct: 303 AIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSIT 362 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LGT+ D Q +DE+ + +F HY FPP+SVGE + PKRREIGH LA+R + V+ Sbjct: 363 LGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVI 422 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 P+ D+FPYT+R+ +++ ESNGSSSMASVC SLALMDAGVPI+ VAGIAMGLV+E D Sbjct: 423 PEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDET 482 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 VL+DILG EDHLGDMDFK+ G+RDGI+A QMD+KIEG+++++M AL Q++ AR HIL Sbjct: 483 TVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHILD 542 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD--- 592 ME+ I PR ++S APR+ + I+PD+I VIG GG V++++ EET T I +E++ Sbjct: 543 RMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEEGV 602 Query: 593 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 G V IAAT+ A+ AI RI++I A E G Y G V I DFGAFV I K GL+H+S Sbjct: 603 GIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLHVS 662 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 +I VE V DYL++G +V V +LEV G++RL+ K + Sbjct: 663 EIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRKPFVSEEN 707 >UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 Tax=cellular organisms RepID=PNP_GRAFK Length = 750 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 300/712 (42%), Positives = 432/712 (60%), Gaps = 17/712 (2%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGR 72 +++ETG +A+QA +V+V + TVV + K F PLTV+Y+E+ AAGR Sbjct: 15 GREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQK-DLPFLPLTVDYREKFAAAGR 73 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 PG FF+RE RPS+GE L RL+DR +RPLFP+ + E QV+ ++S + +V P+ +A + Sbjct: 74 YPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLMSHDDEVMPEAMAGL 133 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE 192 ASAA+ LS PF I ARVG +N ++++NPT+ +L ES +++++ + +V+MVE E Sbjct: 134 AASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMMIGASADSVMMVEGE 193 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG-KPRWDWQPEPVNEALNARVAALAE 251 +SE+ M+ A+ F HE +V I+ + L G K +++ P NE L +V +A Sbjct: 194 MDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAPENEDLVKKVHDMAY 253 Query: 252 ARLSDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVL 310 ++ + + K+ER IK E A+ E+ + + + EK VR L Sbjct: 254 DKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELEEYGDLVSDYYRKAEKAAVRDLTL 313 Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R+DGR+ D +R + LP HGS++FTRGETQAL T TLGT+RDA +D Sbjct: 314 NEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTLGTSRDANQIDMPSH 373 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 E + F HYNFPP+ GE + RRE+GHG LA+R + ++P ++ PYTVRVVSE Sbjct: 374 EGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIP--EECPYTVRVVSE 431 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--NYVVLSDILGDEDHL 488 + ESNGSSSMA+VC ++ALMDAGV +K V+GIAMGL+ +GD Y VLSDILGDEDHL Sbjct: 432 VLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGKYAVLSDILGDEDHL 491 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 GDMDFKV G+ DGI+A QMDIK++G++ EI+ AL QA+ RLHIL + I P D+ Sbjct: 492 GDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHILEKLTDTIAQPNADV 551 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-----GTVKIAATDGE 603 +AP++ T +I + I +IG GG VI+ L +ETGTTI I +D G ++I T+ E Sbjct: 552 KAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPVTEEGIIEILGTEQE 611 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEK 661 I +IE IT + E G VY KV +++DFGA V G E L+HIS++A +R Sbjct: 612 GIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEVLLHISELAWERTND 671 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRI-RLSIKEATEQSQ--PAAAPEAPAAEQG 710 V D L++G + VK +D + R ++S K E+ + AP ++G Sbjct: 672 VNDVLKLGDVLDVKYFGLDPKTRKDKVSRKALMEKPEGYKERAPRDRDDKRG 723 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 317/740 (42%), Positives = 433/740 (58%), Gaps = 56/740 (7%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLT 60 + + +G T+ LETG +ARQA +V+ +D DT + T K + G DFFPLT Sbjct: 33 VEATIDNGDFGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFDFFPLT 92 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +ER YAAGRIPGSFFRREGRP L RLIDRP+RP F +G NEVQVI TV+S+ Sbjct: 93 VDVEERMYAAGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSL 152 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI------NDQYVLNPTQDELKESK 174 +P+ D+VA+ ASA+ LSG+P +GP+G R+ I + Q+V PT+++ + + Sbjct: 153 DPKDMYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQHESAL 212 Query: 175 LDLVVAGT---------------------------EAAVLMVESEAQLL----------- 196 ++VVAG A++MVE+ A Sbjct: 213 FEMVVAGRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVNDGAPA 272 Query: 197 -SEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVNEALNARVAALAEARL 254 +E + + + L + ++ P + A V + A+ R+ Sbjct: 273 PTESVVAEGIEAAKPFIAELCGAQQALRQAVDPETEEFPLFPPYGADVLAAVDSEAKGRI 332 Query: 255 SDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEP 314 SD I DKQER + +T+ LL E E E+ +A+ K VVRSR+LA Sbjct: 333 SDIMSIADKQERDEALSSDMDDTVEALLEEFPE-REAEIRAAHNAVTKEVVRSRILADGF 391 Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 RIDGR + IR LDV ++PR HGS+LF RGETQ L TL T + Q +D L Sbjct: 392 RIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDHR 451 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 ++ HYNFPPYS GETG VGSPKRREIGHG LA+R + ++P D FPYT+R VSE S Sbjct: 452 RYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVSEALGS 511 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL----VKEGDNYVVLSDILGDEDHLGD 490 NGS+SM SVC ++L+L +AGVP+KA VAGIAMGL VK YV L+DILG ED GD Sbjct: 512 NGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTDILGAEDAFGD 571 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 MDFKVAG+ D I+ALQ+D K++GI +++ AL QA+ ARL IL M + I+ P +S+ Sbjct: 572 MDFKVAGTEDFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEVIDEP-DPMSD 630 Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR 610 +APRI TI + KI +VIG G I +TE+TG + IEDDGTV I+AT G A+ A+ Sbjct: 631 YAPRITTISVPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISATSGGSAEAAVD 690 Query: 611 RIEEITAE--IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQ 667 RI EI +VG + G V + FGAFV+I ++GLVHIS++ KR+EKV D + Sbjct: 691 RINEIANPQLPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKKRIEKVEDVVN 750 Query: 668 MGQEVPVKVLEVDRQGRIRL 687 +G ++ V++ ++D +G+I L Sbjct: 751 VGDKLEVEIADIDNRGKISL 770 >UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 Tax=Actinobacteridae RepID=PNP_BIFLI Length = 914 Score = 795 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 307/732 (41%), Positives = 430/732 (58%), Gaps = 35/732 (4%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD-TAVFVTVVGQKKAKPGQDFFPLT 60 + ++ +G+ T+ ETG +A+QA AV +DD + + T K DFFPLT Sbjct: 9 VEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLT 68 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +E+ YAAG+IPGSFFRREGRPS L R+IDRP+RPLFP NEVQV+ TV++V Sbjct: 69 VDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAV 128 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 NP D++A+ ASA+ +SG+PF GP+ R+ I+ Q+V P E + + ++VVA Sbjct: 129 NPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVA 188 Query: 181 GT-----EAAVLMVESEA-------------QLLSEDQMLGAVVFGHEQQQVVIQNINEL 222 G + A+ M+E+ A E+ + G + +V+ + +EL Sbjct: 189 GRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDEL 248 Query: 223 VKEAGKPRWDWQP-EPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL 281 K A K ++Q + L AR+ +A L +A I +K R ++ IK L Sbjct: 249 KKIAAKETKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVL 308 Query: 282 LAE----DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT 337 E D+ + ELG +++ +VR R+L + RIDGR IR L ++PR Sbjct: 309 ADEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRV 368 Query: 338 HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK 397 HGSALF RGETQ L TL + Q +D L G ++ ++ +Y PPYS GETG VGSPK Sbjct: 369 HGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPK 428 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RREIGHG LA++ ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L+ AGVP+ Sbjct: 429 RREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPL 488 Query: 458 KAAVAGIAMGLVKEGDN----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 KA VAGIAMGLV + + L+DILG ED GDMDFKVAG+ + I+ALQ+D K++G Sbjct: 489 KAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDG 548 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 I +I+ AL QAK AR IL V+ + I+ P ++SEFAPRI T + +KI +VIG G Sbjct: 549 IPADILAAALQQAKEARATILEVINECIDGP-AEMSEFAPRIITTSVPVEKIGEVIGPKG 607 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTR 631 +I + E+TG I IEDDGTV I++ GE AK A I+ I E G Y GKV + Sbjct: 608 KMINQIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVK 667 Query: 632 IVDFGAFVAIGGGKEGLVHISQIAD----KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 FGAFV + G +GL+HISQI + +R++ V D L+ G V V V VD +G+I L Sbjct: 668 TTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISL 727 Query: 688 SIKEATEQSQPA 699 +I +Q A Sbjct: 728 AIPGFEDQENNA 739 >UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 Tax=Actinobacteria (class) RepID=PNP_CORJK Length = 764 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 313/739 (42%), Positives = 434/739 (58%), Gaps = 55/739 (7%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLT 60 + + +G ++ ETG++ARQA AV +D DT + T ++ + G DFFPLT Sbjct: 22 VEATIDNGDFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLT 81 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +ER Y+ GRIPGSFFRREGRP L ARLIDRP+RP F G NEVQVI TV+S+ Sbjct: 82 VDVEERMYSVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSM 141 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI------NDQYVLNPTQDELKESK 174 +P+ D++A+ GASA+ LSG+P +GP+G R+ + Q+V PT+++ +++ Sbjct: 142 DPKDRYDVLAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAI 201 Query: 175 LDLVVAGT------------------------EAAVLMVESEAQL------------LSE 198 +LVVAG AV+MVE+ A +E Sbjct: 202 FELVVAGRVTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTE 261 Query: 199 DQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVNEALNARVAALAEARLSDA 257 + + + + + N L K +++ P E + A V A A L D Sbjct: 262 EVVAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDI 321 Query: 258 YRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRID 317 I DKQER + + LL E E E+ + + K VVR R+L RID Sbjct: 322 MAIADKQERDEALAANMQANVDELLPEFPE-REAEIRAAHNEVTKAVVRRRILEDGFRID 380 Query: 318 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFL 377 GR+ IR L + ++PR HGSALF RGETQ L TL + Q +D L E + ++ Sbjct: 381 GRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYI 440 Query: 378 FHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGS 437 HYNFPPYS GETG VGSPKRREIGHG LA+R + V+P D FPYT+R VSE SNGS Sbjct: 441 HHYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGS 500 Query: 438 SSMASVCGASLALMDAGVPIKAAVAGIAMGLVK------EGDNYVVLSDILGDEDHLGDM 491 +SM SVC ++L+L +AGVP+KA VAGIAMGLV D YV L+DILG ED GDM Sbjct: 501 TSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDM 560 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 551 DFKVAG+ D ++ALQ+D K++GI +++ AL QA+ ARL IL +ME+AI++P D+S+ Sbjct: 561 DFKVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAIDSP-DDMSDL 619 Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 AP I +I I +KI +VIG G I +TEETG I IEDDGTV I+A GE A+ A + Sbjct: 620 APHITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEK 679 Query: 612 IEEITA--EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQM 668 I I + +VG + G V + FGAFV++ G++GL+HIS + D+R+E+V D + + Sbjct: 680 INAIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSV 739 Query: 669 GQEVPVKVLEVDRQGRIRL 687 G ++ V++ ++D +G+I L Sbjct: 740 GDKLEVEIADIDNRGKISL 758 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 278/708 (39%), Positives = 402/708 (56%), Gaps = 26/708 (3%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ Sbjct: 49 VDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAA 107 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAGRIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ PD+ Sbjct: 108 AAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT-EAAVL 187 +A+ GAS ALSLS IP+NGP+GA R+G I+ +YV+NPT+ E+ S L+LVVAG ++ ++ Sbjct: 168 LAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIV 227 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNARV 246 M+E+ A+ + + A+ G + Q +IQ I +LVKE G + + + + Sbjct: 228 MLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYT 287 Query: 247 AALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 LA RL + DK R V+ I+ +T L + D E+ E + + K V Sbjct: 288 HKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEV 347 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA----R 360 RS VL R DGR+ +R + + HGSALF RG+TQ L T T + + Sbjct: 348 FRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIK 407 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 QV+ + G + F+ HY FPPY+ E G V RRE+GHG LA++ + V+P Sbjct: 408 SDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIP--RD 465 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------- 473 FP+T+RV SE+ ESNGSSSMAS CG SLALMD+GVPI +AVAG+A+GLV + D Sbjct: 466 FPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIE 525 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 +Y +L+DILG ED+ GDMDFK+AG+ GI+ALQ DIK+ GI +I+ A+ QA A+ I Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEI 585 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 593 L +M + I+ PR E P + T+++ K +G GG ++ L ETG TI D+ Sbjct: 586 LQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEE 645 Query: 594 TVKIAATDGEKAKHAIRRIEEITAE-----IEVGRVYTGKVTRIVDFGAFVAIGGGKEG- 647 T + A A I EI + +E G VYT +T I D G V + Sbjct: 646 TFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAV 705 Query: 648 LVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 L+H +Q+ ++++ T L++GQE+ VK D GR+RLS K Sbjct: 706 LLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753 >UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 Tax=Actinobacteria (class) RepID=PNP_ACIC1 Length = 782 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 311/713 (43%), Positives = 433/713 (60%), Gaps = 30/713 (4%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 ++ +G TV ETG +ARQA + + + DT V K+ + DFFPLTV+ Sbjct: 10 EAVIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVD 69 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 +ER YAAGRIPGSFFRREGRPSE L RLIDRP+RP F +G NEVQV+ TV++V+P Sbjct: 70 VEERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDP 129 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + D+VA+ AS + L+G+PF+GPIG R+ +I+ +V PT EL+ + D+VVAG Sbjct: 130 EHLYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDMVVAGR 189 Query: 183 -----EAAVLMVESEAQL------------LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + A++MVE+EA +E+ + G + + + +EL Sbjct: 190 VLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQSELAAR 249 Query: 226 AGKPRWDWQP-EPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE 284 A KP ++ + + VAA ++ A I KQER A +D + + + L E Sbjct: 250 AAKPVTEFPLFRDYEDDVYDAVAATVRDDVARALTIAGKQEREAALDEVANTALGRL-GE 308 Query: 285 DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFT 344 E E+ L A+ K +VR R++ + RIDGR IR L G++PR HGSALF Sbjct: 309 RFAGREKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRVHGSALFE 368 Query: 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHG 404 RGETQ L TL R Q LD + ++ HYNFPPYS GE G VGSPKRREIGHG Sbjct: 369 RGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPKRREIGHG 428 Query: 405 RLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 LA+R ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L++AGVP++A VAGI Sbjct: 429 ALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGI 488 Query: 465 AMGLVKEG----DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 AMGL+ + +YV L+DILG ED GDMDFKVAG+RD ++ALQ+D K++GI ++ Sbjct: 489 AMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLA 548 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL QA+ ARL IL VM +AI+ P +S +APRI TIKI D+I VIG G +I + Sbjct: 549 AALPQAREARLTILDVMAKAISEPAP-MSPYAPRIITIKIPVDQIGAVIGPKGKIINQIQ 607 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTRIVDFGAF 638 ++TG I IEDDGT+ I AT+G A+ A I I EVG Y G V + FG F Sbjct: 608 DDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVKATPFGVF 667 Query: 639 VAIGGGKEGLVHISQIAD----KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 V++ GK+GL+HIS++ +RVE V D L++G ++ V++ ++D +G++ L Sbjct: 668 VSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 289/702 (41%), Positives = 413/702 (58%), Gaps = 22/702 (3%) Query: 15 TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIP 74 + +ETG + RQA AV ++ D+ ++ T K K DF PL+V+YQER +AG Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 G + +R+GRP+E E L RLIDRP+RPL G+ +E Q+++ V+S + + + D +A+I + Sbjct: 149 GGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIAS 208 Query: 135 SAALSLSGIPFNGPIGAARVGYIN-DQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 +++L +S +P + P+ A +VG + V+NPT +++ SKL+L+VAGTE AVLM+E A Sbjct: 209 ASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAA 268 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR 253 L E M+ AV GHE QV+ Q + L K AGK + + E L RV L R Sbjct: 269 DFLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDR 328 Query: 254 LSDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAG 312 + D + K+ + + + + + L+ + + + + R Sbjct: 329 IDDMWSSGLGKEAQGKIMTDLYTAVVGELIEDYPGET-VAIKGAFKDLLCRRMFFRAREE 387 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R DGR IR L + TG+LPR HGSALFTRGETQ + T TLG + Q +++L G Sbjct: 388 GLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTD 447 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 F Y FPP VGETG VG+P RRE+GHG LA+R ++ +P + FPYT+RV S IT Sbjct: 448 EKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVESLIT 507 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE------GDNYVVLSDILGDED 486 ES+GSSSMASVCG SLALMDAGVPIKA VAGIAMG++ +N V+LSDILG ED Sbjct: 508 ESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSDILGTED 567 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 LG MDFKVAG R GIS Q+DIK EG+T E M+ AL QA+ RLH+L ME+ I +PR Sbjct: 568 ALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKVIASPRE 627 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEKA 605 ++ P++ + I + I +IG GG IRA+ E+ +++ ++G V++++ D K Sbjct: 628 ELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDFELVNMDVGEEGGVQLSSFDTAKM 687 Query: 606 KHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIG--------GGKEGLVHISQIAD 656 A I + E G YTGK+T I FG F+ I G EGLVH+S++A Sbjct: 688 GEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLVHVSELAH 747 Query: 657 KRVEKVTDYLQMG--QEVPVKVLEVDRQGRIRLSIKEATEQS 696 +RV +++ +E+ VK L D+ G+++LS K E+ Sbjct: 748 ERVRNCEGFMKSMNVEELTVKYLGKDK-GKLQLSRKALLEEQ 788 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 300/714 (42%), Positives = 418/714 (58%), Gaps = 28/714 (3%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + LETG + RQA A+M + +T ++ T F PLTVNY ER AAG Sbjct: 93 GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAG 152 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 R G F +R+GRP + E L++RL+DRPIRP+F +G+ N+ Q++ V+S + +P+ +A+ Sbjct: 153 RTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAI 212 Query: 132 IGASAALSLSGIPFNGPIGAARVGY-INDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 A+AAL +S IP + RVG + +++NPT +E++ S+LDL+VAGT AVLM+E Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIE 272 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 L+E+QM+ A+ G E + + K+ GKP+ V E L +R+ L Sbjct: 273 GFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKRTDAVVTVPEELESRLMELV 332 Query: 251 EARLSDAYRIT-DKQERYAQVDVIKSETIATLLAEDETLDENE----------------- 292 L+ AY+ + K+ R A V ++ + L AE +E Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392 Query: 293 -LGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 351 + L A+E V+R VL + R DGR IR + R G+LPRTHGSALFTRGETQ++ Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452 Query: 352 VTATLGTARDAQVLDEL-----MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 ATLG+A DA D + + F Y+FPP SVGETG G+P RRE+GHG L Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 A+R + ++PD +FPYTVRV S ITESNGSSSMASVCG LA+MDAGVPI VAGIAM Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572 Query: 467 GLVKEGD-NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 GL+ E + VLSDILG ED LGDMDFKVAG D I+A QMDIK+EGIT +IM AL Q Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 585 AK R HIL M + P +S APR+ ++I+PDK VIG GG VI+ + + +G Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692 Query: 586 T-IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK-VTRIVDFGAFVAIGG 643 T I+I++ G V + A + A AI ++ + ++ E G ++ K V + FG FV + Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 G++GLVH+S++ D V +++G + V V+ V G++ LS K + Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQRHDR 806 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 286/719 (39%), Positives = 431/719 (59%), Gaps = 30/719 (4%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N V + + + + +E G ++RQA +VM+ DT + V K K +F PLTVN Sbjct: 9 NKKVFEIIFENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK-KNSLNFLPLTVN 67 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQE+ YAAG+IPG F RREG+PS+ E L +RLIDR IRPLF + F NEVQ+I V+S +P Sbjct: 68 YQEKLYAAGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDP 127 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 N + +A++G+S AL +S IPF P+ + VG I D ++NPT + + S L++AGT Sbjct: 128 DGNNENIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGT 187 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + ++ MVE ++ +SE+ L ++ FGHE + + E+ + GK + VN L Sbjct: 188 KDSLNMVEMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLL 247 Query: 243 NARVAALAEARLSDAYRITD-----------KQERYAQVDVIKS-------ETIATLLAE 284 + + + + K+ + ++ K + L E Sbjct: 248 EVEIKDKYFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNNKKDNFNLLDLE 307 Query: 285 DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFT 344 ++ L NE+ I + + ++R +L R DGR IR + R +LPRTHGSALFT Sbjct: 308 NQKLYLNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFT 367 Query: 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHG 404 RG TQ+L TLGT R+++++D+L E F+ HYNFP ++VG G +P RREIGHG Sbjct: 368 RGGTQSLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHG 427 Query: 405 RLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 LA++ + V+P + FPY++RVVSEI +SNGSSS A++C +S+ALM AGVP+K+ VAG+ Sbjct: 428 MLAEKALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGV 487 Query: 465 AMGLVKEG----DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 AMGL+ + ++Y +LSDI G ED+ GD+DFK+AG++ GI+ALQ+DIKI+GIT EI + Sbjct: 488 AMGLIVDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFE 547 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 L QAK R+ IL ME+ IN R ++S++AP++ I I P+KI+D+IG GG +I + Sbjct: 548 KVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQII 607 Query: 581 EE-TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD----- 634 E+ I+I DG + I + E + I+ +I+V VY K+ R V Sbjct: 608 EKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDK 667 Query: 635 -FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 FGA I G EG +HIS++ + +V+KV D L++GQ + VK ++++ +G+I LS K+ Sbjct: 668 TFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKKDV 726 >UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G7_9CHLO Length = 838 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 307/746 (41%), Positives = 435/746 (58%), Gaps = 52/746 (6%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 P + G+ VT+ETG + RQA AVMV+ +T ++ T+ + F PLTVN Sbjct: 50 TPKTLTLRIGESEVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVN 109 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G + +R+G E ETLI RL+DRP+RP+ P+G+ + Q++ V+S + Sbjct: 110 YQERYSAVGRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDG 169 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLVVA 180 + D +A+ AS A ++S +P PI RVG + + ++NPT ++++ S+LDLV+A Sbjct: 170 ARSTDALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLA 229 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AV+M+E L+ +ML A+ GHE ++I+ K+ G+ + + E Sbjct: 230 GTEDAVMMIEGFGDFLTTQEMLYAIEKGHEAVANACRDIDAWAKDVGRVKNEAAVLVAPE 289 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED--------------- 285 ++ V AL A L++A I+ KQ R A V+ I++ I +L D Sbjct: 290 GVDDAVRALVGAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQS 349 Query: 286 -----------------------------ETLDENELGEILHAIEKNVVRSRVLAGEPRI 316 EN++ E N +RS + A R Sbjct: 350 LRFAFCALLLFSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQ 409 Query: 317 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 376 DGR+ +R + G+LPRTHGS+LFTRGETQA+ ATLG A DAQ +D L ++ F Sbjct: 410 DGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRF 469 Query: 377 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 436 HY FPP SVGETG VG+ RRE+GHG LA+R ++ V+P D FP+TVR+ S ITESNG Sbjct: 470 YLHYFFPPSSVGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNG 529 Query: 437 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLV----KEGDNYVVLSDILGDEDHLGDMD 492 SSSMA+VC SLAL DAGVPI VAGIAMGL+ G+ V+L+DILG ED LGDMD Sbjct: 530 SSSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMD 589 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG DGISA QMDIK+EGIT +++ AL A+ +HILG M++A AP G +S +A Sbjct: 590 FKVAGDGDGISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYA 649 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAKHAIRR 611 P++ +++ I VIGKGG I+A+ E+T TI+I ++G V + + G A+ Sbjct: 650 PQVEVVEVPTKYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEI 709 Query: 612 IEEITAEIEVGRVYT-GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 I +T E EVG+ Y +VT+++DFGAFV I G EGL H+S++ RV V D ++ GQ Sbjct: 710 IRSLTVEPEVGKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQ 769 Query: 671 EVPVKVLEVDRQGRIRLSIKEATEQS 696 + VK+LE + +G+ +LS + Sbjct: 770 TIDVKLLETNERGQFKLSRRAVLLDE 795 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 772 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 267/701 (38%), Positives = 392/701 (55%), Gaps = 27/701 (3%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + + TG AR A +V + DT+ VT V + + F PLTV+Y+++ AAGRI Sbjct: 12 RVMRISTGKFARFADGCAVVEIGDTSAMVTAVSRTRPS-SAGFLPLTVDYRQKAAAAGRI 70 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 P + RRE ++ E L++RLIDR IRPLFP G++ E QVI+ +++V+ +PDI ++ G Sbjct: 71 PTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASING 130 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE-AAVLMVESE 192 AS AL+LS P+NGPIGA RVG ++D+YV+NPT+ +L SKL+LVV G E V+M+E Sbjct: 131 ASTALALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGS 190 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNARVAALAE 251 A+ + A+ G ++ Q +I+ I L KE GK + + E + + LA Sbjct: 191 AENVLLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRTPPKLFTPPEEILEQARQLAT 250 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 RL + K R V I++E L + + E + I K V R+ + Sbjct: 251 ERLQVVFTDATHHKFSRDNAVQEIRAEVEQKLKELFPEAEPFMINESISVITKQVFRNLI 310 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE-- 367 L R DGR+ +R + + HGSALF RG+TQ L T T + + + +D Sbjct: 311 LDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIA 370 Query: 368 --LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 L G + F+ HY FPPY+ ETG V S RRE+GHG LA+ + V+P FP+T+ Sbjct: 371 EILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVPS--DFPFTI 428 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--------NYVV 477 R+ +E+ ESNGSSSMAS C SLALMDAGVPI + VAG+A+GLV D +Y + Sbjct: 429 RLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNNPTEIQDYKL 488 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILG ED++GDMDFK+AG++ G++ALQ DIK+ G+ +I+ A QA A+ I+ +M Sbjct: 489 LTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATMAKSDIINIM 548 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 +A+ PR E+ P +K+ K +G GG IR +T ETG TI D+ T + Sbjct: 549 NRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTITQVDEETFSV 608 Query: 598 AATDGEKAKHAIRRIEEITAE-----IEVGRVYTGKVTRIVDFGAFVAIGGGKEG-LVHI 651 A + A I+++ + ++ G +YT +T I + G V + + L+H Sbjct: 609 FAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFPTMQPTLLHN 668 Query: 652 SQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIK 690 SQ+ +RV + +GQE+ VK D G +RLS K Sbjct: 669 SQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRK 709 >UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms RepID=A4RTW2_OSTLU Length = 823 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 299/706 (42%), Positives = 417/706 (59%), Gaps = 16/706 (2%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 + G+ V LETG + QA AV S +T ++ T ++ F PLTVNY ER Sbjct: 73 LRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVNYAERFS 132 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAGR G + +R+G E ETL ARL+DRPIRP+ +G+ E QV+ ++S + + + D Sbjct: 133 AAGRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDAERSTDA 192 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVVAGTEAAV 186 +A+ ASAAL++S IP P+ RVG + +D+ V+NPT +++K+S+LDLV+AGT+ AV Sbjct: 193 LAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLAGTDEAV 252 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV 246 LM+E L+ D+ML A+ G E + I+ + + E ++ V Sbjct: 253 LMIEGFCDFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPEGVDEAV 312 Query: 247 AALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR 306 AAL E L A + KQER A + + + L E + + + IE +R Sbjct: 313 AALVEDELKQAIVVPIKQERGAMIGAARERAVEALQDEFQA---SAVINACGKIESRALR 369 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R DGR MIR + G+LPRTHGS+LFTRGETQA+ ATLG ++DAQ D Sbjct: 370 DVIRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQD 429 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 ++ F+ HY FPP SVGETG G RREIGHG LA+R ++ ++P + FP+ + Sbjct: 430 DVEAGEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEEDFPFVCK 489 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--------NYVVL 478 + S ITESNGSSSMA+VC +LAL+DAGVPIK VAGIAMGL+ + +VL Sbjct: 490 LESTITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDELEPIVL 549 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 +DILG ED LGDMDFKVAG +DGI+A QMDIK+EGIT ++M+ AL +A+ +HILG ME Sbjct: 550 TDILGSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVHILGEME 609 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVKI 597 + AP G S++APRI +I + VIGKGG IR++ E+TG I++ + + Sbjct: 610 KCDPAPAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAENIDVNKEKEMVF 669 Query: 598 AATDGEK-AKHAIRRIEEITAEIEVGRVYTG-KVTRIVDFGAFVAIGGGKEGLVHISQIA 655 + AIR IE + E EVG++Y G V ++V+FG FV G EGLVHIS++ Sbjct: 670 VTGGADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLVHISELD 729 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 RV V+D G + VK++ VD +G+ LS KE + P A Sbjct: 730 VSRVPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEVLLEENPELA 775 >UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Tax=Campylobacter RepID=PNP_CAMHC Length = 711 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 281/722 (38%), Positives = 412/722 (57%), Gaps = 54/722 (7%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 + + E +A+QA A ++ + +T V TV ++ + +DF PLTV Y E+ Y Sbjct: 5 VEVNNNVEIFEINKVAKQAAGACLMKVKNTVVLATV-ARENTQVEEDFLPLTVQYIEKQY 63 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAGRIPG + +RE +P + ETL +R+IDR +RPLFP+G+ Q++ V+S +P+++ + Sbjct: 64 AAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEIDLQV 123 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLM 188 V + AS AL LS IP P+ RVGYIND +V+NPT EL+ S LDL VAG + +LM Sbjct: 124 VGLNAASVALYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKDEMLM 183 Query: 189 VESE-----------AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--WDWQP 235 +E SED+M+ A+ F + KP +++P Sbjct: 184 IEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAALEYKP 243 Query: 236 EPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGE 295 E +E + + + + A K ER ++D I ++ + + A +N + Sbjct: 244 EVEDENIANFIEQNFTSDVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQKNVVSN 303 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 I+ ++ ++RS+++ R DGR D IR + + T +LP HGS LFTRG+TQALV T Sbjct: 304 IIGKFKRKIIRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQALVVTT 363 Query: 356 LGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413 LG DAQV D L ++ F+F YNFP + VGE + SP RRE+GHG LAKR + Sbjct: 364 LGGETDAQVSDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAKRALTP 423 Query: 414 VMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD 473 +P + P +R VSEI ESNGSSSMASVCG SL+L AGV VAG+AMGL+ E D Sbjct: 424 SVPLNN--PQVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLIFEDD 481 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 + +L+DI+G EDH GDMDFKVAG+R+GI+ALQMDIK+ GI+ EI++ ALNQAK R +I Sbjct: 482 KHAILTDIMGLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKDGRNYI 541 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-DD 592 L +ME A + + E P+I ++P+K+ D+IG+GG I+ L ++ +I++E D Sbjct: 542 LNLMEVANDDIIIN-EEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSIDLERDS 600 Query: 593 GTVKIAATD-----------------------GEKAKHAIRRIEEITAEIEVGRVYTGKV 629 G VKI + G K H R E T+ +VG + G V Sbjct: 601 GEVKIQGANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKE--TSNFQVGEEFDGVV 658 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 +I+DFGAF+++ G +GL+H+S+I + L G + VKV E+ ++G+I L + Sbjct: 659 KKIMDFGAFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEI-KRGKISLEL 709 Query: 690 KE 691 E Sbjct: 710 CE 711 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 755 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 285/744 (38%), Positives = 412/744 (55%), Gaps = 74/744 (9%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 + + +A+QA AVM+ + +T V TV + + +DF PLTV Y E+ Sbjct: 3 YSIEVNNQVEIFDLNKVAKQAAGAVMLRVKNTVVLATV-ARDDVQVEEDFLPLTVQYIEK 61 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 YAAGRIPG + +RE +P + ETL AR+IDR +RPLFP+G+ Q++ V+S +P+V+ Sbjct: 62 AYAAGRIPGGYVKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDL 121 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 +V + AS AL LS IP N P+ RVGYI+D++V+NP+ ELK S LDL VAGT+ + Sbjct: 122 QVVGLNAASVALYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDEL 181 Query: 187 LMVES--------------------------------EAQLLSEDQMLGAVVFGHEQQQV 214 LM+E + SED+++ A+ F + Sbjct: 182 LMIEMRSIAQQSSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILR 241 Query: 215 VIQNINELVKEAGKPR--WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDV 272 E KE K + +PE NE + + + + +A K ER +++ Sbjct: 242 ASNAYEEAFKEHKKEDAILELKPEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGK 301 Query: 273 IKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTG 332 I + + +A+ E +E + +L +K +VR +++ R DGR D +R + + T Sbjct: 302 IAKQIASDEVAQKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETN 361 Query: 333 VLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT--DTFLFHYNFPPYSVGET 390 VLP HGS LFTRG+TQALV ATLGT DAQ+ D L + + F+F+YNFP +SVGE Sbjct: 362 VLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTALIEKFMFNYNFPGFSVGEA 421 Query: 391 GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 + +P RRE+GHG LAKR + + PYT+R+VSEI ESNGSSSMASVCG +LAL Sbjct: 422 SPLKAPGRRELGHGNLAKRALAPSIDINS--PYTIRLVSEILESNGSSSMASVCGGALAL 479 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 AGV + VAG+AMGL+ EGD + VL+DI+G EDH GDMDFKVAGS DGI+ALQMDIK Sbjct: 480 RAAGVDTQKLVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIK 539 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 + GI+ E+++ AL QAK R HIL +M QA + + + P++ ++P KI D+IG Sbjct: 540 LGGISLEVLKEALYQAKRGREHILNLMHQADSKIEVN-EDVLPKLELFSVDPSKIVDIIG 598 Query: 571 KGGSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAE----------- 618 + G I+ + E +I+++ + G VKIA + A I IT++ Sbjct: 599 QAGKTIKEIIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPH 658 Query: 619 -------------IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 +G + G V +VDFGAF+ + G +GL+HIS+I Sbjct: 659 GHDRRDKDRQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHISKIKTP-------- 710 Query: 666 LQMGQEVPVKVLEVDRQGRIRLSI 689 L +G + V V E + +I LS+ Sbjct: 711 LNVGDRLKVCVSE-QKGNKISLSL 733 >UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=2 Tax=Diptera RepID=B0WG77_CULQU Length = 759 Score = 753 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 257/674 (38%), Positives = 399/674 (59%), Gaps = 26/674 (3%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD--FFPLTVNYQERTYAA 70 V + +G AR A +V++ DTAV VT V ++K G + F PL V+Y+++ AA Sbjct: 51 GRVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAA 110 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 GRIP +F RRE PSE E L ARL+DR +RPLFP F + Q++ +++++ PD+ A Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMV 189 + ASAALSLS IP+NGP+GA RVG ++++ ++NPT+ EL+ S LDLVV+ T+ V+M+ Sbjct: 171 INAASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVML 230 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP-VNEALNARVAA 248 E +++E+++ A+ G ++ Q++I I +L K GKP+ +P P +E + A V Sbjct: 231 EGRGNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRT 290 Query: 249 LAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR 306 ++E RL + +R DK R V +++TI + + ++D +GE + K+V R Sbjct: 291 MSEMRLREIFRDFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSVFR 350 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V R DGR D +R + + HGSALF RG+TQ T L + A LD Sbjct: 351 EMVFEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLD 410 Query: 367 ELM----GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 + G ++ F HY FPPY+ GETG +G RREIGHG LA++G+L ++P+ + P Sbjct: 411 PITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN--P 468 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-------- 474 +T+R+ +E+ ESNGSSSMA+VC S+ALMDAG+P++ A AG+A+GL+ + +N Sbjct: 469 FTIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHLQD 528 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 Y +L+D+LG ED+LGDMD KVAG+R G++A+Q DIK+ GI +++ +L +A AR IL Sbjct: 529 YRILTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFKIL 588 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 +M ++I+ R + P ++I P + ++G GG IR L ETG + ED+ Sbjct: 589 DLMNESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDENQ 648 Query: 595 VKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GL 648 +I A A +E + ++E G +YT K+ + D G V + L Sbjct: 649 FRIFAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSPAL 708 Query: 649 VHISQIADKRVEKV 662 +H SQ+ ++V ++ Sbjct: 709 LHNSQLDQRKVSEI 722 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 260/721 (36%), Positives = 419/721 (58%), Gaps = 37/721 (5%) Query: 1 MLNPIVRKFQY--GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58 M+ ++++ + +++ETG +AR+A + +V M +T++ TVV K++K F P Sbjct: 1 MIPELIKENLFLEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIP 60 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 LT++Y+E+ A G+IPG + +REGRP + E L RL+DR +RPLF + + NE+Q++ +++ Sbjct: 61 LTIDYREKYSAGGKIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLL 120 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD-- 176 S + V PD +A + AS A+S+S I F GP+ R+ IND +++NP +E+K+S Sbjct: 121 SYDINVLPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSDFYLD 180 Query: 177 ------LVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK-- 228 L+V GT +++VE E + +SE +M+ A+V H+ Q+ I+ L+ + K Sbjct: 181 LDLDLDLIVGGTNNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFI 240 Query: 229 -------PRWDWQPEPVNEALN-----ARVAALAEARLSDAYR-ITDKQERYAQVDVIKS 275 +++ + +N LN ++ ++ + Y+ KQ+R ++ I Sbjct: 241 KKKLYKIELYNYYYKYINFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQKRSNKIYNILK 300 Query: 276 ETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP 335 + E ++ E+ I I+K ++++ + R+DGR D IR + + LP Sbjct: 301 KIKFHFYNESIVINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLP 360 Query: 336 RTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGS 395 HGSA+FTRGETQAL T TLG++ D +D + F HYNFPP+S GE ++ Sbjct: 361 GVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKG 420 Query: 396 PKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGV 455 RREIGHG LA+R + ++P YT+RVVS++ ESNGSSSMA+VC ++LALMD+G+ Sbjct: 421 VSRREIGHGNLAQRALKNIIPTT----YTIRVVSDVLESNGSSSMATVCASTLALMDSGI 476 Query: 456 PIKAAVAGIAMGLVKE--GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 +K V+GI+MGL+ ++LSD+LGDED++GDMDFK+ G+ G++A QMDIKI G Sbjct: 477 IVKRPVSGISMGLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISG 536 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 IT +++ + +AK L I+ M ++ PR ++ A +I+T I I VIG GG Sbjct: 537 ITYDVLSYTIFKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGG 596 Query: 574 SVIRALTEETGTTIEIEDD---GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 630 I+ + T T I+I++ G ++I + K K AI +I+ IT +VG +Y KV Sbjct: 597 KRIQEIQVSTETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVK 656 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSI 689 I FG FV I EGL+HI +I+ + KV +++ G + VK L + + +I+LS Sbjct: 657 NIKKFGVFVKISKYLEGLLHIYEISW--LTKVESFIRKGDIISVKYLGKNNKFRKIKLSH 714 Query: 690 K 690 K Sbjct: 715 K 715 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 248/712 (34%), Positives = 392/712 (55%), Gaps = 33/712 (4%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGR 72 + TG +A A + + +DT+V VT + KK F PL V+Y+E+ AA Sbjct: 1 SRQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSENS-FLPLVVDYKEKASAACL 59 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 IP +F RR+ +E E L+ R IDR +R LF +G+ + Q+I+ +++ + NPD+VA+ Sbjct: 60 IPTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVN 119 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE 192 GASA+L+LS IP+ GP+GA R+G ++ Q V+NP + +L+ S+LDLVV +E+ ++MVE Sbjct: 120 GASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGF 179 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEA 252 A+ + ++++ A+ + Q +IQ I EL AGK + + ++ L+ V Sbjct: 180 AKEVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSY 239 Query: 253 R---LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 + + +R ++ ++ E + + + + +A+ K+V R+ + Sbjct: 240 NRFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFRANI 299 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 L R DGR+ D +R +D + HGS+LF RGETQ TAT G+ A +D + Sbjct: 300 LEKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTIS 359 Query: 370 ----GERTDTFLFHYNFPPYSVGETG-MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 G + F+ HY FPP+S E GS RREIGHG LA+R ++ V+P D+ P+T Sbjct: 360 EAVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLP--DELPFT 417 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK----------EGDN 474 +R+ +E+ SNGSSS+AS C SLA+MDAGVPIK+ VAG A GLV + DN Sbjct: 418 LRLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDN 477 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 Y +L+DILG ED+LGDMDFK+AG+R GI+ALQ D K+ G+ I++ A+ + R +L Sbjct: 478 YQLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRAKVL 537 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 VME+ I R + P ++++ K +IG GG VIRAL +E G +I+ ++ Sbjct: 538 DVMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVEEEE 597 Query: 595 VKIAATDGEKAKHAIRRI----------EEITAEIEVGRVYTGKVTRIVDFGAFVAI-GG 643 + A D AI +I EE+T+ + G +Y GK+ + +G + + Sbjct: 598 FLVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLELFAD 657 Query: 644 GKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 L+H+ ++ RV + ++G V VK L +D +GR+ +S K Sbjct: 658 CPTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRKALLP 709 >UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=bacterium Ellin514 RepID=B9XS52_9BACT Length = 664 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 274/604 (45%), Positives = 384/604 (63%), Gaps = 10/604 (1%) Query: 101 PLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 160 PLFP+G+ NEVQV V+S + + +PDI+++IGASA+L +S IP+ GP+GA R+ +N + Sbjct: 1 PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60 Query: 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 ++ PT E+ ES LDL+ G E ++M E + +SE+ A+ FG + + +I Sbjct: 61 FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120 Query: 221 ELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAT 280 EL +AGK + + + V E + ALA R+ A K R A V+ I E Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180 Query: 281 LLAED--ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTH 338 L+ + E + E L + + I+K VR ++ R+DGR D IR + G+LPR H Sbjct: 181 LVEKFGAEKVTEFVLKDASYYIQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPRAH 240 Query: 339 GSALFTRGETQALVTATLGTARDAQVLDELMG-ERTDTFLFHYNFPPYSVGETGMVGSPK 397 GSALF+RGETQ + ATLGT DAQ D G F+ HYNFP YSVGETG + P Sbjct: 241 GSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISGPG 300 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RREIGHG LA+R + ++P +DK+PY +RV SEI ESNGS+SMASVCG +LALMDAGVP+ Sbjct: 301 RREIGHGALAERSIEPMIP-LDKYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGVPM 359 Query: 458 KAAVAGIAMGLVKEGDN------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI 511 VAGI++G+ E D Y +LSDI+G ED GDMD K+AG+ GI+ Q+D+K+ Sbjct: 360 IRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDLKL 419 Query: 512 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK 571 GI ++M L +A+ ARL ILG M + + APR ++S++APRI T++INP+KI +IG Sbjct: 420 RGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALIGP 479 Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 GG I+ L EE+G I IEDDGTV I + E K A I +TAE E+G++Y GKV Sbjct: 480 GGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKVVT 539 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 + +FGAFV GK+GLVHIS++A+ RV++ D +++G E+ VK L VD +GR++LS + Sbjct: 540 VKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSRRA 599 Query: 692 ATEQ 695 A + Sbjct: 600 AMAE 603 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 17/154 (11%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDT--AVFVTVVGQKKAKPGQDFF------PLTVNY 63 G + E G++ R A + + S +T T+ + A+ + ++Y Sbjct: 225 GIRAIHSEAGILPR-AHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHY 283 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEG-FVNEVQVIATVVSVNP 122 Y+ G R P E L +R I P+ P + ++V + ++ N Sbjct: 284 NFPNYSVGET-----GRISGPGRREIGHGALAERSIEPMIPLDKYPYAIRVTSEIMESNG 338 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGY 156 + + ++ G + AL +G+P P+ +G Sbjct: 339 STS--MASVCGGTLALMDAGVPMIRPVAGISIGM 370 >UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG8_9CHLO Length = 791 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 263/710 (37%), Positives = 398/710 (56%), Gaps = 29/710 (4%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPG 75 V ETG +AR A++ SM D+ V V + P FFPL V+Y+ER A G+IP Sbjct: 51 VGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQVDYRERHSAFGKIPP 110 Query: 76 SFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 +F RREG P + E L R++DR IRPLFP+ F + V A V++ + +P ++A+ GAS Sbjct: 111 TFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLATDQSQDPAVLAVNGAS 170 Query: 136 AALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 AALS+S IP+NGP+GA RV + D + +LNP+ +++ SKL L AG E LM+E++A Sbjct: 171 AALSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLFYAGNENRTLMIEAQA 230 Query: 194 QL-----LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD-WQPEPVNEALNARVA 247 + E + A+ HE +V+I+ L + GK + D Q P L V Sbjct: 231 GTADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDPVQQTPEQAKLRHDVF 290 Query: 248 ALAEARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + +L Y+ I K R ++ +K E + ++ E + N++ + + V+ Sbjct: 291 DRSSEKLRALYKEEIQCKHTRGKRMAELKDEIVNSMTEEGMSFTNNDVEQAFFWVSSRVM 350 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R + + R+DGR +R L + VLP HGS++F RG TQAL T T+G DAQ L Sbjct: 351 RDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQALATVTIGKLIDAQKL 410 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D +G + HY+FP +S+ ET G RREIGHG LA++ + ++P ++P+ V Sbjct: 411 DAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKSLAGIIPAAKEWPFAV 470 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-------YVVL 478 R+ +E ESNGSSSMA+VC SLALMDAGVPIK V I++GLV + D Y +L Sbjct: 471 RINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVMDEDEQTGKVTRYELL 530 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI+G ED LGDMDFK+AG+R GI+ +Q+D K GI +I+ A++ A AR ++ M+ Sbjct: 531 SDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAMDVASIARSAVIDEMD 590 Query: 539 QAINAPRG-DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG---- 593 +AI+ PR D SE + T++++ I +IG G IR L TG + I ++ Sbjct: 591 RAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERTTGAKVSIHEEDDAGV 650 Query: 594 ----TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 T+ I A A+ +I+ I + G V KV + +G F+ + ++GL+ Sbjct: 651 DDQCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLAYGWFLRLPNEQDGLL 710 Query: 650 HISQ-IADKRVEKVTD-YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 H S+ + ++V+ + D Q+G+EV VK+ +V GR+ LS+K + + Sbjct: 711 HASEYLHTRKVDPMKDNIFQIGEEVLVKIKDV-SDGRVGLSVKALSPAPE 759 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 726 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 302/707 (42%), Positives = 427/707 (60%), Gaps = 24/707 (3%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA-----KPGQD 55 M ++ ++ ++TG +ARQA A VS T V V QK Sbjct: 1 MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60 Query: 56 FFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA 115 L N+ ++YA GRIP FF+REG+ SE E L +R++DR +RPL E VNEV ++ Sbjct: 61 GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120 Query: 116 TVVSV-NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 174 +++ N +V P+I A+I ASAAL LSGIPF+GP+ V + T +E++E++ Sbjct: 121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEV----TCNEIRETE 176 Query: 175 --LDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD 232 L+L VA TE +V+MVE+EA SE++++ A+ + + V INE VK + Sbjct: 177 GGLELFVACTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVK-P 235 Query: 233 WQPEPVNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDE 290 N+ L +V A +L Y RI+ K++R+ ++ I ++T A L + E Sbjct: 236 IGVLYDNKELCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDDGYA--E 293 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 +E+ + +EK +VR VL R DGR IR + + LP THGSALFTRG TQ+ Sbjct: 294 SEVLFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQS 353 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 LV ATLG+ +D QV+D++ GER ++ L HYNF PY+VGE G + +P RREIGHGRLA + Sbjct: 354 LVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKA 413 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 V AV+P + FPYT+R+VSEITES+GSSSMA+VCG+SLALMD GVPI VAGIAMGL+ Sbjct: 414 VKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLIT 473 Query: 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 +G VLSDI GDED LGDMDFKVAG+R+GI ALQMD+K+ GI+ ++ ALNQA R Sbjct: 474 DGVRSAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDALNQALAGR 533 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 LHIL ME I PR + + AP+I KI+ D + VIG GG IR ++ +T I+I+ Sbjct: 534 LHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDID 593 Query: 591 DDGTVKIAATDGEKAKHAIRRI-------EEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 + V I A E A R+ + ++++G +Y GK+ +VDFG FV + Sbjct: 594 QNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFGLFVVLPN 653 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 +EGLVHIS+I+ RV + GQ V V++ ++ G+I+L+++ Sbjct: 654 KQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMR 700 >UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 Tax=Epsilonproteobacteria RepID=PNP_SULDN Length = 721 Score = 723 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 277/724 (38%), Positives = 406/724 (56%), Gaps = 51/724 (7%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 K G +A+QA A + +T + TVV + DF PLTV Y E+ Sbjct: 6 KIDLKNKNEEYSFGEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYIEKA 65 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 YAAG+IPG FF+RE + S+ ETL +R++DR +RPLFP+GF + Q+ V SV+ + + Sbjct: 66 YAAGKIPGGFFKRETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDLQ 125 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVL 187 ++A+ ASAAL +S I N + A RV I+ + +LNPT EL +S LDL ++GT+ +L Sbjct: 126 VLALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKEDLL 185 Query: 188 MVESE------------------------------AQLLSEDQMLGAVVFGHEQQQVVIQ 217 M+E + + ED+++ + E Sbjct: 186 MIEMRSKGGIKVDTNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKAEELLFETNA 245 Query: 218 NINELVKEAGKP--RWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKS 275 E+ KE K + + +NE + V + + + A K ER + ++ Sbjct: 246 MYEEMFKEFKKETSPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERSTALRQLRK 305 Query: 276 ETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP 335 + I T E DE EL +++ +++K VR ++L R DGR + IR + + T VLP Sbjct: 306 KIIIT----KEEWDEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISISTNVLP 361 Query: 336 RTHGSALFTRGETQALVTATLGTARDAQVLDEL--MGERTDTFLFHYNFPPYSVGETGMV 393 H S LFTRG+TQALV T+G +DAQ+ + L G + + F+ HYNFP +SVGE + Sbjct: 362 SAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGEASPI 421 Query: 394 GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDA 453 KRRE+GHG LAKR + ++ + TVR+VSEI ESNGSSSMA+VCG +AL A Sbjct: 422 MGTKRRELGHGNLAKRALEPIVNLEGQ---TVRLVSEILESNGSSSMATVCGGYMALRAA 478 Query: 454 GVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 + +AGIAMG+V EGD Y +LSDI+G EDH GD+DFKV GS+DGI+A+QMDIK+ G Sbjct: 479 DIETSDTIAGIAMGMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDIKLGG 538 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 I+ I++ AL QAK R HI+ +M++A + P INP I D+IG+ G Sbjct: 539 ISLNILKEALYQAKEGRAHIINIMQEAEKNISFNDG-VLPSTDFFHINPSFIGDIIGQAG 597 Query: 574 SVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITA-------EIEVGRVY 625 IR + E+ I+I+ DG VK+ + A IE I + E +VG ++ Sbjct: 598 KTIREIIEKFEVAIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYKVGDIH 657 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRI 685 G V +IV+FGAF+ + G +GL+HIS+I+D+RVEKV+D L+ G+E+ V++LE + +I Sbjct: 658 KGIVKKIVEFGAFIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF-KGNKI 716 Query: 686 RLSI 689 L I Sbjct: 717 SLGI 720 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 246/697 (35%), Positives = 407/697 (58%), Gaps = 20/697 (2%) Query: 1 MLNPIVRKFQY--GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58 M+ + ++ + +++ETG +A QA +V M T++ T+V KK K G +F P Sbjct: 1 MIPELRKENIFLEDGQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLP 60 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 L ++Y+E A G+IPG F +RE RPS+ E L RLIDR +RPLFP+ F+ E+Q+I ++ Sbjct: 61 LIIDYKENYSAGGKIPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLL 120 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 S + V PD +A + ASAA+S+SGIPF GP+ A R+ + +++NP +K+S ++L+ Sbjct: 121 SYDRNVLPDGLAGLVASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLI 180 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 + GT+ ++LM+E E + +SE++++ + H ++ I L+K K + + P Sbjct: 181 IGGTKNSILMIEGEMKEISENEIIYFIKIAHFFIKLQITAQINLIKNL-KIKRNNLPVFN 239 Query: 239 NEA---LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGE 295 N L ++ + ++ Y+ R+ Q++++ + L ++ L+E+E Sbjct: 240 NLNFIYLKNKIKYIFYEKIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNY 299 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 I ++K ++R +L R+DGR D +R + +T LP HGSA+F+RGETQAL T T Sbjct: 300 IFEILKKEILREIILKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVT 359 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LG++ D +D ++ + F HYNFPP+S GE ++ RREIGHG LA+R + ++ Sbjct: 360 LGSSLDVNKIDNVILQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNII 419 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GD 473 P PYT+RVVS+I ESNGSSSMA+VC ++LALMDAG+PIK V+GI+MGL+ D Sbjct: 420 PFKT--PYTIRVVSDILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTD 477 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 ++LSDILGDED++GDMDFK+ G++ GI+A QMDI G E++ ++ +AK L + Sbjct: 478 EAIILSDILGDEDNIGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFL 537 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD- 592 + + I PR E +P+I +I I VIG GG +I+ + T T ++IE++ Sbjct: 538 IKKILNTIQYPRFSFKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEE 597 Query: 593 --GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 G ++I ++ K+AI +I+ + + ++Y K+ I + + + G+ Sbjct: 598 NLGIIEIYGKTDKQIKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSGQT---- 653 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 + K+ E + Y + + +K+ V++ G+I Sbjct: 654 ---MDLKKSENLNLYSFLRKGDWIKIKSVNQNGKINF 687 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 238/707 (33%), Positives = 375/707 (53%), Gaps = 27/707 (3%) Query: 16 VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG-QDFFPLTVNYQERTYAAGRIP 74 + ETG +AR A AV+VS +T+V TVVG+ + DF PLTV++Q+ A GRIP Sbjct: 45 IRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSASAVGRIP 104 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 ++ RRE + ++ + L +R+IDR IRPLFP+ + E Q+I ++V+ +P ++ + A Sbjct: 105 MNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVMLGLNAA 164 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA--VLMVESE 192 SAAL+LS IP+ GP+GA RV IN++ V+NP++ +K S +DLV+AG + +LM++ + Sbjct: 165 SAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRILMIDMD 224 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEA 252 + + + G + +IQ IN++ G+P+ E ++ L A + Sbjct: 225 GCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDIDLIALTEEMHVL 284 Query: 253 RLSDAYRI-----TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRS 307 Y+I DK R V + + E ++L + K +R Sbjct: 285 CGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKF---KERSSPHKLRHTFRNLLKRSLRE 341 Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 + E R DGR+ + +R +++R V HGSALF RG+TQ T T A D Sbjct: 342 ALFKSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSAAFQPDA 401 Query: 368 LM----GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 L ++ F+ HY FP ++ RRE+GHG LA++ + ++P D FPY Sbjct: 402 LSQLLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIP--DDFPY 459 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV--KEGDNYVVLSDI 481 +R+ ++ ESNGSSSMASVC LAL+DAGV IKA AGIAMGL+ +E ++Y +L+DI Sbjct: 460 CLRLACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDYRILTDI 519 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 G ED GDMDFK+AG+ G +A+Q+D+K+ GIT +++ +L QA+ H+L +M++A Sbjct: 520 NGLEDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQLMKKAQ 579 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 R P TI + K + GG + + ETG I IEDD + I A + Sbjct: 580 PVSRDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNISIFAPN 639 Query: 602 GEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGG-KEGLVHISQIA 655 K + A + ++ ++ G +Y ++T ++D G V + G K L+ S + Sbjct: 640 KVKLEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILLKNSNLD 699 Query: 656 DKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAA 700 + V ++GQ++ ++ L D G R+S K S P Sbjct: 700 VRNVAHAKVLGFKVGQKIIIQYLGRDPYTGYHRISRKTLQSASLPVQ 746 >UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B019_SULD5 Length = 746 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 281/747 (37%), Positives = 416/747 (55%), Gaps = 69/747 (9%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 K + G +A+QA A ++ + +T + TV + + ++F PLTV Y E+ Sbjct: 3 YKIYVNNQEEIYDIGKVAKQAAGAALLKIKNTVILATV-ARDDTQVSENFVPLTVQYVEK 61 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 +YA G+IPG + +RE +P + ETL +R+IDR +RPLFP+G+ Q+ V+S + +V+ Sbjct: 62 SYAVGKIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEVDL 121 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 + A+ A AAL LS IP N + R+GY++ YV+NP+ LK+S LDL VAGT+ + Sbjct: 122 QVAALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKEEL 181 Query: 187 LMVESEA--------------------------------QLLSEDQMLGAVVFGHEQQQV 214 LM+E + ED +L A+ Sbjct: 182 LMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAITE 241 Query: 215 VIQNINELVKEAGKPR--WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDV 272 K D++ + ++A+ A + + + DA K ER +++ Sbjct: 242 ATTAYENTFVSLKKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASELSK 301 Query: 273 IKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTG 332 I + +A E D+ + +L +K +VR ++ R DGR+ IR + + T Sbjct: 302 IVDAILKDNIATLEGWDKALVDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIETN 361 Query: 333 VLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGET 390 +LP HGS LFTRG+TQALV ATLG +DAQ+ D L + +DTF+ +YNFP +SVGE Sbjct: 362 LLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSSVSDTFMVNYNFPGFSVGEA 421 Query: 391 GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 + +P RRE+GHG LA+R + V+ T+R+VSEI ESNGSSSMA++CG +LAL Sbjct: 422 SPLRAPGRRELGHGNLARRALEPVVDINRL--QTIRLVSEILESNGSSSMATICGGALAL 479 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 AGV I+ VAGIAMGLV EGD + VLSDI+G EDH GDMDFKVAG++DGI+ALQMDIK Sbjct: 480 KAAGVEIEKLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMDIK 539 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 + GI++++++ AL QA+ R HIL +ME+A + + P++ ++P KI D+IG Sbjct: 540 LGGISRDVLKEALYQAREGREHILAIMEKASEEIVIN-NAVLPKLELFNVDPSKIVDIIG 598 Query: 571 KGGSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAEIEV-------- 621 + G IR + E+ +I+++ + G VKIA + EK A I +IT + Sbjct: 599 QAGKTIREIIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGHGR 658 Query: 622 -------------------GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 V G V RIVDFGAFV + GG +GL+H+S+IAD RV+KV Sbjct: 659 DRDNKYPTKESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVDKV 718 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSI 689 +DYL + Q+V VK+L+ +I L + Sbjct: 719 SDYLALEQKVRVKILK-QAGNKIELEL 744 >UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4RT74_OSTLU Length = 679 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 265/663 (39%), Positives = 381/663 (57%), Gaps = 21/663 (3%) Query: 60 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 V+Y+ER+YA G+IP +F RREG P E E L R+IDR RPLF + F EV + V++ Sbjct: 1 MVDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMA 60 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + +P ++A+ GASAAL+ S IP+NGPIGA RV +N +++P+ + ++ S L Sbjct: 61 SDGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFY 120 Query: 180 AGTEAAVLMVESEAQL---LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE 236 AG EA LM+E+++ L E + A+ HE + +I L E GKP+ + Sbjct: 121 AGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIPPQIALANEIGKPKQELAAA 180 Query: 237 PVNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETL------ 288 PV + +A+ARL Y I DK ER ++ ++SE + L+ Sbjct: 181 PVTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELMDSHPEWMESGEV 240 Query: 289 DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGET 348 E LG A+ V+R RVL R+DGR +R LD TG +P HGSALF RG T Sbjct: 241 SEAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNT 300 Query: 349 QALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK 408 QAL T TLG+ D+Q LD L G + + HY+FP +SV ETG G RRE+GHG LA+ Sbjct: 301 QALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARG-LSRREVGHGALAE 359 Query: 409 RGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 + +L V PD D FP+ VRV +E ESNGSSSMA+VC S+ALMDAGVP+ V I++GL Sbjct: 360 KSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGL 419 Query: 469 VKEGDN-------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQV 521 V + D Y ++ DI+G ED LGDMDFK+AG+R G++ +Q+D K GI +I+ Sbjct: 420 VMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDCKPAGIPLDILIE 479 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTE 581 AL++A AR ++ VME+A++ P+ + + APR + P I +IG GS I+AL + Sbjct: 480 ALDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEK 539 Query: 582 ETGTTIE-IEDDGTVKIAATDGEKAKHAIRRIEEITAEI-EVGRVYTGKVTRIVDFGAFV 639 ETG + + DDG + + + AI IE + I EVG+ Y V ++ FG + Sbjct: 540 ETGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVL 599 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 699 G +GL+H+S+IA + E V+D +G +V VK ++ D +G I+ S K + +P Sbjct: 600 TTASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLPRPRPP 659 Query: 700 AAP 702 Sbjct: 660 GRE 662 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 38/234 (16%) Query: 28 TAAVMVSMDDTAVFVTVV-GQKKAKPGQDFFP------LTVNYQERTYAAGRI-PGSFFR 79 + + +T TV G + D L ++Y +++ R Sbjct: 290 HGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARGLSR 349 Query: 80 RE---GRPSEGETLIARLIDRPIRPLFPEG--FVNEVQVIATVVSVNPQVNPDIVAMIGA 134 RE G +E L +FP+ F V+V + N + + A+ Sbjct: 350 REVGHGALAEKSLLG----------VFPDEDAFPFAVRVNTETLESNGSSS--MAAVCSG 397 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQ---------YVLNPTQDELKE--SKLDLVVAGTE 183 S AL +G+P +GA +G + D+ Y L L++ +D +AGT Sbjct: 398 SMALMDAGVPLTEHVGAISIGLVMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTR 457 Query: 184 AAVLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP 235 + V ++ + + + D ++ A+ +Q VI + V E D P Sbjct: 458 SGVTGIQLDCKPAGIPLDILIEALDRASAARQKVIDVMERAVSEPKSVMKDSAP 511 >UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Helicobacter RepID=PNP_HELHP Length = 709 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 252/712 (35%), Positives = 400/712 (56%), Gaps = 39/712 (5%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 K ++ + +A+ A ++ + + +V Q+ K +F PL+V Y E+T Sbjct: 5 KLEFENLSEQYSFNYVAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEKT 64 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 YA + P F +REG+PSE E L +RLIDR +RPLFP+G+ ++ V+S + + + Sbjct: 65 YANNKFPSGFIKREGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDLQ 124 Query: 128 IVAMIGASAALSLSGIPF----NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 + A+ A+ AL +S +P + + R+G + +++NPT ++L ES+L+L V+G + Sbjct: 125 LNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGRD 184 Query: 184 AAVLMVES-------EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--WDWQ 234 +LM+E A LSE+ L A+ + Q ++ K ++ Sbjct: 185 DELLMIEMKSIRTAQGANELSEENFLEALECAKNYIKNATQTYHQQFAPYKKSPFAFESA 244 Query: 235 PEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELG 294 + ++E L + +++A + K ER+ Q+ + + + E E DE ++ Sbjct: 245 NDELDEQLLNIIQTHYHTPITEAIKHMAKSERHTQLKALIKQVVR----ECEIEDEKKVQ 300 Query: 295 EILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTA 354 E + A ++ +VR +L R DGR +R + ++T +LP HGS LFTRG+TQALV+A Sbjct: 301 EHIMAYKRKLVREMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVSA 360 Query: 355 TLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL 412 T+G DAQ + L + FLFHYNFP +SVGE M+GS RRE+GHG LAKR + Sbjct: 361 TIGGDNDAQNYEMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLAKRALH 420 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG 472 + + + DK T+R+VSEI ESNGSSSMASVCG SLAL G+ +++ +AG+AMGLV + Sbjct: 421 SSVQEQDK---TIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQD 477 Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 + +L+DI G EDH GDMDFKVAG GISA+QMDIK+ GIT+EI+ AL QAK AR Sbjct: 478 EQCAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAKEAREQ 537 Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-ED 591 IL +ME+A + P+ + I P KI +VIG GG VI+ + E +I++ + Sbjct: 538 ILAIMEEARAKIVLND-VILPKSESFMIPPHKIVEVIGAGGRVIKDIIERFEVSIDLARE 596 Query: 592 DGTVKIAATDGEKAKHAIRRIEEITA--------------EIEVGRVYTGKVTRIVDFGA 637 G V ++A++ E + A I ++ + VG + GK+ +IVDFG Sbjct: 597 SGMVSVSASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKIVDFGI 656 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 FV + G +GL+HIS+I + +++++ E+ ++L ++ ++ L + Sbjct: 657 FVELPRGGDGLIHISKITKDKTQQLSEIFHNVSELECEILSQNK-NKVELGL 707 >UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG3_PHYIN Length = 893 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 256/753 (33%), Positives = 390/753 (51%), Gaps = 83/753 (11%) Query: 17 TLETGMMARQATAAVMVSMDDTAVFVTVVGQKK--------AKPGQDFFPLTVNYQERTY 68 + + G +A+ A AV+ S T + TVV +DF PLTV+++ +++ Sbjct: 84 SYKVGKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQRDFLPLTVDFRVKSH 143 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 A G IP + RRE S+ E L +R++DR IRPLFP + QV+ATV S +P +P + Sbjct: 144 AVGLIPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLV 203 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLM 188 VA+ ASA LS+S IP++GP+G RV ++ Q V+NPT + + + +D++ AGT +M Sbjct: 204 VAVNSASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAATMDVLYAGTAEHAIM 263 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAA 248 VE+ ++E ++ A+ H I+ +L E GK + ++ P + + A+ Sbjct: 264 VEASGDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREYSPLFIAPEVWAKAEE 323 Query: 249 LAEARLSDAYRI--TDKQERYAQVDVIKSETI----ATLLAEDETLDENELGEILHAIEK 302 L A +K R + ++ + + +D+ + H + Sbjct: 324 LGRADAEALIASGRVNKLARQEGEREVYNKMLTGMRQHFATANPPVDDAAIQRAAHDTFQ 383 Query: 303 NVVRSRVL--------AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTA 354 V+R R+L R+DGR ++R L+++ VLP HGS+LF RGETQ L + Sbjct: 384 RVLRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHGSSLFARGETQTLCSV 443 Query: 355 TLGTARDAQVLDELMGERT-----------DTFLFHYNFPPYSVGETGMVGSPKRREIGH 403 TLG L + E + HY FPP+ V ETG VG RR IGH Sbjct: 444 TLGPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVNETGRVGGTNRRMIGH 503 Query: 404 GRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAG 463 G LA++ VL ++P + +FPYTVR+ SE+ S+GSSSMA+VCG SLALMDAGVP++ AVAG Sbjct: 504 GALAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSLALMDAGVPVRRAVAG 563 Query: 464 IAMGLVKEGD------------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI 511 IA+GLV GD NY +++DILG EDH GDMDFKVAG+ G++ALQ+D+K+ Sbjct: 564 IAIGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVAGTTSGVTALQLDVKL 623 Query: 512 E-GITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN----PDKIK 566 G+ +++ L +AK ARLHIL M ++ PR + + + I + I Sbjct: 624 PGGVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSALPNVSIECVIATNLIG 683 Query: 567 DVIGKGGSVIRALTEETGTTIEIED--DGTVKI--AATDGEKAKHAIR------------ 610 +IG GGS IR L ++ I D +G V++ AA D EKA+ I+ Sbjct: 684 ALIGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAAGDAEKARDWIQTELAGFASSGPR 743 Query: 611 -----------------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 ++ T G YT V +++DFGA + G+ G VHIS+ Sbjct: 744 GSNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAILEASSGQRGFVHISE 803 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIR 686 ++ +V + D + GQE+ + L+ G++ Sbjct: 804 LSRDKVSNIHDVVSEGQEMEFECLQDGASGKMS 836 >UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 Tax=Helicobacter RepID=PNP_HELPJ Length = 688 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 237/695 (34%), Positives = 378/695 (54%), Gaps = 33/695 (4%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G T +A+QAT+++M + T + +V +++ +DF PL V + E++YAAG Sbjct: 9 GNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREP-VSEDFLPLVVQFLEKSYAAG 67 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 +IPG F +REGR + E L +RLIDR +RPLFP+ + Q+ V++ + + + + A+ Sbjct: 68 KIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDLQVSAL 127 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 ASA L L+ I + A R+ +++++++NP+ L +S LDL V+GT+ ++ M+E Sbjct: 128 NAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESLNMIEM 187 Query: 192 EA-----QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA--LNA 244 + L E ML A+ + + L +EA P + E LN Sbjct: 188 RSLGQKLNALEEPLMLEALELAQKSLKETCA----LYEEAFTPYQNELLFKEGEGIVLNE 243 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 R+ L + + D + ++ + + E + E+ L ++K Sbjct: 244 RLLDLLKNQYFDEIIKGIESSALSERENVFKEVAKKISEAHSEFSLEEIELSLEKVKKTE 303 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 +R ++ + R D R + +R + + + +LP H S LFTRG+TQ+LV LG DAQ Sbjct: 304 IRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMDNDAQT 363 Query: 365 LDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 + L + + F+FHYNFPP+ VGE +G+ RRE+GHG LAKR + + + ++ Sbjct: 364 HENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKEQ-- 421 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 +R+VSEI ESNGSSSMASVC SLAL +GV I VAG+AMG+V E ++ +LSDI Sbjct: 422 -VIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAILSDIS 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G ED GDMDFK+AG+ +GI+A+QMD K+ GI E++ AL QAK AR HIL +M +A Sbjct: 481 GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIMHEAKE 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATD 601 + S P+ + PDKI ++IG+GG VI+ + E+ I++ G VKI + Sbjct: 541 KIVINFS-HLPQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNTPSGEVKIMG-N 598 Query: 602 GEKAKHAIRRI-------EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 E+ I ++ + + V +V RIVDFGAF+++ G EGL + Sbjct: 599 KERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGL-----L 653 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 + ++K L+ G + +V+ ++ G+I L + Sbjct: 654 RKQNMDKCQVILKEGDSIRCRVISFNK-GKIALDL 687 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 242/706 (34%), Positives = 388/706 (54%), Gaps = 55/706 (7%) Query: 22 MMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRRE 81 A A +VM+ + + + +V + +DF PL+V Y E+ YA G+IP F ++E Sbjct: 47 KYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQGFLKKE 106 Query: 82 GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS 141 G+PS+ E LI+RLIDR +RPLFP+ + VQ+ V+S + +++ AM AS L LS Sbjct: 107 GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166 Query: 142 GIPF--NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE------- 192 IP G + RV +D++ L ++L ESKLDL V+G V M+E + Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQSLKTTTQ 226 Query: 193 --------AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP----RWDWQPE-PVN 239 A +S++ +L A+ + I+ ++ L + +P + +++ ++ Sbjct: 227 NKDSIIENANEISKNDLLEAINLAKKH----IETMSMLYMKHFEPFILEKREYEGSNKLD 282 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHA 299 AL + + + K ER+ Q+ + E ++ L+ + + + A Sbjct: 283 LALKESLEKEHTDSIKECLCGMSKTERHTQLIALIKEI-----SQTHNLEREIVAKHVFA 337 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 I+K ++RS +L R DGR IR + + + +LP+THGSA FTRG+TQALVT TLG+ Sbjct: 338 IKKEIMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQ 397 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 DAQ + ++ + +FHYNFPP+SVGE +G+ RRE+GHG LA + + + + + Sbjct: 398 NDAQTQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALKAIESNVANT- 456 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-YVVL 478 P+T+R+VSEI +SNGSSSMASVCGASLAL+ A + + VAGIAMGL+ E + + +L Sbjct: 457 --PHTIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYESEERFAIL 514 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI+G ED GDMDFK+AG+ G SALQ+DIKI G+++ I+ +L QA+ LHIL +M Sbjct: 515 SDIMGLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGILHILSLMR 574 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-DDGTVKI 597 P ++ P+ + + I ++IG+GG IR + +I I+ D+G V I Sbjct: 575 NVEIKPNYEL---LPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINIDKDEGIVHI 631 Query: 598 AATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 +A + + ++A R+ E+ +VG G V++ V+ G V + G G++ Sbjct: 632 SANNKDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLAQGGNGIL- 690 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 R + + LQ+GQ + V++L G+ L I + E++ Sbjct: 691 -------RTISMQEELQIGQALSVRILSCSY-GKTELEIIDKKEEN 728 >UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S0I5_TRIAD Length = 741 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 236/713 (33%), Positives = 361/713 (50%), Gaps = 66/713 (9%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + G +A A +V+V TAV VT V + F PL V+Y+E+ A G Sbjct: 50 GNSEIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATG 109 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 +IP +FF+RE PSE E L +R IDR IR F G EVQ++ +++S + + + + A+ Sbjct: 110 KIPVNFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIVPAI 169 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 G GA RVGYIND+ ++NPT+ EL +SKLDLV+ + ++M+E Sbjct: 170 NG----------------GAVRVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEG 213 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAE 251 A L + +L A+ +G E+ Q V++ + + GK + + ++E++ L Sbjct: 214 TASELPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLTFYRLDESIKEGAYNLIG 273 Query: 252 ARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 +++D K R + E TL D +L + ++ K + V Sbjct: 274 DQINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNV 333 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 + R DGR + +R +D + P HGS+LF RGE+Q Sbjct: 334 MTKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ-------------------- 373 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 FPPY+ E G V RREIGHG LAK + +V+ D FP+TVR+ Sbjct: 374 ------------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTG 419 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------NYVVLSDILG 483 ++ SNGS+SMAS CG SLALMDAGVPI +AG+AMGLV NY +L+DI G Sbjct: 420 QVLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAG 479 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED+ G+MDFK+AGSR+GI++LQ D K+ G++ E+++ A+ ++ AR +L +M I+ Sbjct: 480 IEDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDK 539 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 PR D+ AP + + K ++G GG I+ L EE G I D+ V I A + Sbjct: 540 PRLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAK 599 Query: 604 KAKHAIRRIEEITAEIEV-----GRVYTGKVTRIVDFGAFVAIGGGKE-GLVHISQIADK 657 + +RIEE+ A+++ ++YTGK+ I +FG + + + L+H+SQ+ + Sbjct: 600 ALANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHR 659 Query: 658 RVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 RV + +G E+ VK D R RLS K + P + + Sbjct: 660 RVSRPELLGYSIGHEMTVKCFGRDPITNRYRLSRKALLPALSSSIFPPNSSTD 712 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 212/644 (32%), Positives = 341/644 (52%), Gaps = 34/644 (5%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G++++ L+TG MAR A+AAV+ S D +V TVV +K+ + + PL V Y+ A G Sbjct: 34 GKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQVEYRPSASAVG 93 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIP +F RRE S+ E LI+R IDR IRPL P E QVI ++++ + ++ + Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLMPAN-SYETQVICKPLALDENADQIMLGI 152 Query: 132 IGASAALSLSGIPFNGPIGAARV-----GYINDQYVLNPTQDELKESKLDLVVA-GTEAA 185 AS+AL +S PFNGP+ A RV G I + +NP Q+ELK S ++++VA Sbjct: 153 NAASSALHISSAPFNGPLAAIRVSMDPRGKI---FHVNPGQEELKASSMNMIVAMRRNQK 209 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 +M+E + + +Q+ A+ + + + ++EL G + + + + Sbjct: 210 TVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELG---GIEKDELPEKTTTMEILEI 266 Query: 246 VAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 + ALA R+ DK R ++ I + I T + ++ + + K Sbjct: 267 LEALARERIYYVMTDSTHDKISRDEEIKAIMEDVIGTEALQ--PFPPADIYQCWSFLVKK 324 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 V+R L+ R DGR R + ++ + + HG ++F RG+TQ + T T + A Sbjct: 325 VLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTVTFDSPTAAF 384 Query: 364 VLDE----LMGERTDTFLFHYNFPPYSVGETG--MVGSPKRREIGHGRLAKRGVLAVMPD 417 D L +R +F+ HY FP ++ + G S RREIGHG LA++ + + P Sbjct: 385 HPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALAEKALKPLFPT 444 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG----D 473 FPY VR+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+GL+ + Sbjct: 445 --GFPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIGLISDEKEPET 502 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 NY VL+DILG ED+ GDMDFK+AG+++G +A Q+D+K +G+T++ ++ +L+ A+ H+ Sbjct: 503 NYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESLDAARAGIDHV 562 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 593 LG M + PR P I +++I P K + G + + ETG I +ED+ Sbjct: 563 LGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAETGVKISVEDES 622 Query: 594 TVKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRI 632 + + A EK + A+ + + + G + ++ + Sbjct: 623 NISLLAPSQEKLQKALSMMNGVLESNTTLDFAFGSIIQAEIVEL 666 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 212/640 (33%), Positives = 329/640 (51%), Gaps = 26/640 (4%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G+ + L+ G +AR A++ V+ S D AV TVV +K + PL V Y+ A G Sbjct: 34 GKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVEYRPSASAIG 93 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 RIP +F RRE S+ E LI+R IDR IRPL P G E Q+I ++++ + ++ + Sbjct: 94 RIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDENADQIMLGI 152 Query: 132 IGASAALSLSGIPFNGPIGAARVGYIN-DQYVLNPTQDELKESKLDLVVA-GTEAAVLMV 189 AS AL +S +NGP+ A RV + +NPTQ+EL+E+ L+L+VA +M+ Sbjct: 153 NAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAMRKHEKTVMI 212 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E + + S + + A+ + + + +L E P+ + E + L + Sbjct: 213 ELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAE---PKDELASEDFS-GLERLLEET 268 Query: 250 AEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRS 307 A R+ DK R ++ I E A +T +++ + + K V+R Sbjct: 269 ARERIYYVITDAGHDKISRDMEIKAIFEEICAE--KAFQTCEKDAIYRTYSTLVKKVLRD 326 Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 L R DGR D R + + + + HG ++F RG+TQ + T T + A D Sbjct: 327 TTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFHPDS 386 Query: 368 ----LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 L +R +F+ HY FP +++ E G S RREIGHG LA++ + + P FPY Sbjct: 387 VAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNLFPA--DFPY 444 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----NYVVLS 479 R+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+GL+ + Y VL+ Sbjct: 445 ATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAEPETKYRVLT 504 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DILG ED+ GDMDFKVAG+RDG +A Q+D+K G+T+ + +L A+ H+L M Sbjct: 505 DILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGIDHVLQKMSV 564 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 + PR P I +++I P K + G + + ETG I ED+ + + A Sbjct: 565 MRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAEDEAHISLLA 624 Query: 600 TDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVD 634 D EK + A+ + ++ + G + ++ +V+ Sbjct: 625 QDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEVVN 664 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 222/674 (32%), Positives = 350/674 (51%), Gaps = 59/674 (8%) Query: 58 PLTVNYQERTYAAGRIPGSFFRR---EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI 114 PL V+Y+ER +AAG+IP RR G ++ E L +R+IDR IRP G + + I Sbjct: 1 PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60 Query: 115 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI----NDQYVLNPTQDEL 170 + + N VN ++ + S A S++G F P+ AA + + V +P+ +E Sbjct: 61 S--LPGNIVVNCEVQSY--DSRASSINGKKFPVPLKAAACVKLAIQRDGSVVYDPSPNES 116 Query: 171 KESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 +++K +L+ AGT+ VLM+E E +SE + A++ E +I+ +L + Sbjct: 117 EDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQLRQNYRYNA 176 Query: 231 WDWQPEPVNEA----------LNARVAALAEARLSDAYRIT-DKQERYAQVDVIKSETIA 279 D E + L E D ++ D E + I + Sbjct: 177 SDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLFGDNGEESPTIQNIPAHIHD 236 Query: 280 ------TLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 333 + E + ++E+ +L N+ R DGR + +R + T + Sbjct: 237 GTLLSKQVRGRREYIVKSEITRLLKCAMINL----------RADGRGTNAVRPISATTPI 286 Query: 334 LPR-THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM 392 P HGS+ F+RGETQ + TA++G D + + HY+FP +S G Sbjct: 287 FPDCVHGSSQFSRGETQVICTASIGAPSDG--VPHASPYSDSSAFLHYDFPDFSTGTVKS 344 Query: 393 VG--SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 G S RR IGHG LA++ VL V+P++ FPY VR+ E+T SNGSSSMA+ CG++LAL Sbjct: 345 KGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSSMAAACGSTLAL 404 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 +DAGVP+ + VAG+++GL D+ +L DI G EDH GDMDFKV G+ G+ ++Q+D+K Sbjct: 405 LDAGVPLVSPVAGVSVGLT--PDSKTLLLDITGTEDHYGDMDFKVCGTSGGVLSMQLDVK 462 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAIN--APRGDISEFAPRIHTIKINPDKIKDV 568 +T +++ AL+ AK R IL M + + PR + APRI +K +P++ +D+ Sbjct: 463 NP-VTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDL 521 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 IG GGSV+R L + ++++ DG + A A R I ++ A++E G VY G Sbjct: 522 IGPGGSVLRQLEDRFNVSLDLSQDGLIFGALQ---AVSGAKRVIMDLVADVEEGGVYEGT 578 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT-------DYLQMGQEVPVKVLEVDR 681 V I DFGA V + KEGL+H+S++ADK + D+L++G ++ V ++D Sbjct: 579 VIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDH 638 Query: 682 -QGRIRLSIKEATE 694 QG I+LS K+ + Sbjct: 639 VQGSIKLSRKKLLQ 652 >UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D77_OSTTA Length = 615 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 192/501 (38%), Positives = 274/501 (54%), Gaps = 47/501 (9%) Query: 8 KFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERT 67 + + G V LETG + QA AVM S DT ++ T ++ F PLTVNY ER Sbjct: 74 ELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYSERF 133 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 AAGR G F +R+G SE ETL ARL+DRPIRP+ P+G+ + QV+ ++S + + + D Sbjct: 134 SAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGERSTD 193 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVVAGTEAA 185 +A+ ASAAL++S IP P+ RVG + +D+ ++NP+Q+++KES+LDLV+AGT+ A Sbjct: 194 ALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGTDEA 253 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 VLM+E L+ D+ML A+ GHE + I+ + P+ + + E ++ Sbjct: 254 VLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEGVDEA 313 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN-------------- 291 V AL A L++A I KQ R A + + + L + E Sbjct: 314 VEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDCALPIR 373 Query: 292 -------------------------------ELGEILHAIEKNVVRSRVLAGEPRIDGRE 320 + +E +R + R DGR Sbjct: 374 RNRFSREFVGCGSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKGRRQDGRT 433 Query: 321 KDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHY 380 M+R + G+LPRTHGSALFTRGETQA+ ATLG +DAQ +D++ F+ HY Sbjct: 434 TRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDKRFMLHY 493 Query: 381 NFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSM 440 FPP SVGETG +G RRE+GHG LA+R + ++P ++FP+ R+ S ITESNGSSSM Sbjct: 494 FFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITESNGSSSM 553 Query: 441 ASVCGASLALMDAGVPIKAAV 461 A+VC +LAL+DAGVP+K V Sbjct: 554 ATVCAGTLALLDAGVPLKRYV 574 >UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAY8_MONBE Length = 629 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 190/597 (31%), Positives = 302/597 (50%), Gaps = 40/597 (6%) Query: 2 LNPIVR---KFQYGQH-TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFF 57 L+P+VR + G H T G +A QA AV ++D + P Sbjct: 33 LSPVVRITSEAATGSHEPATFTCGALAYQADGAV--TLDQACPL-------HSTPSPFLT 83 Query: 58 PL--TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA 115 PL V+Y+ER A IP SF RREG + ETL+ARL+DR +RPL P Q+ Sbjct: 84 PLLQQVDYRERGTAVNLIPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTV 143 Query: 116 TVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-------ND---QYVLNP 165 +++ ++ P + ++ ASAAL +S I ++GP+ A RVG +D + ++NP Sbjct: 144 KLLASQARMEPTVQSIEAASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINP 203 Query: 166 TQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 E E L+ +G +A +M++ E L + A+ H+ Q ++ EL + Sbjct: 204 DHKETAECVGVLLYSGVQAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGER 263 Query: 226 AGKPRWDWQPEPVNEALNARVAALAEARLSDAYRIT--DKQERYAQVDVIKSETIATLLA 283 AG+ + EP+ + A + + R+ K++R +++ I + A LL Sbjct: 264 AGRTKKPLLREPLALGIMAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADLLQ 323 Query: 284 EDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALF 343 + + + L + K +R VL+ + RIDGR+ D ++ + + P HG++LF Sbjct: 324 QFPMAGLRLVDDALEEVLKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNSLF 383 Query: 344 TRGETQALVTATLGTARDAQVLDELM-----GERTDTFLFHYNFPPYSVGETGMVGSPKR 398 RGETQ TATLG + LDE+ +F F Y FP Y++ + + R Sbjct: 384 QRGETQVFCTATLGDRDAVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQMR 443 Query: 399 REIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIK 458 RE GHG LA+R + ++ + TVRV S++T S GSSSMASVCG SLA+MDAGVP++ Sbjct: 444 RETGHGSLAERALGRMI--DPGYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVPLR 501 Query: 459 AAVAGIAMGLVKEGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIE 512 A VAG++ GLV D Y +L+D+ G ED G MD K+A ++ G++A+Q D ++ Sbjct: 502 APVAGLSCGLVGYTDEEGQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTELR 561 Query: 513 GITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI 569 GI+ ++++ A+ + + +L M A+ A R D P PD + ++ Sbjct: 562 GISLDVLEEAMQRTFDGKQVVLKEMNAAMPATRTDPKACHPMTCESSSAPDAFQPLL 618 >UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SQL7_TETNG Length = 556 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 152/431 (35%), Positives = 245/431 (56%), Gaps = 11/431 (2%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + + +G +AR A + +V + +T+V VT V + K P Q F PL V+Y+++ AAGRI Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRI 59 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 P ++ RRE ++ E L +RLIDR +RPLFP G+ + QV+ +++V+ +PD++A+ Sbjct: 60 PTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINA 119 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVESE 192 ASAAL+LS IP+NGPIGA RVG ++ + ++NPT+ E+ S L+LVV+G ++ V+M+E+ Sbjct: 120 ASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEAS 179 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNARVAALAE 251 A+ + + AV G + Q +I I +L +E + + + V +A Sbjct: 180 AENVLQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAPADVVEYVRQVAS 239 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 + + DK R ++ ++ ET T+ + E+ E + + K++ R+ V Sbjct: 240 ESIYAVFTDYTHDKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNLV 299 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD--- 366 L R DGRE +R + + HGSALF RG+TQ L + T + + D Sbjct: 300 LNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIIT 359 Query: 367 -ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 L G + F+ HY FPPY+ ETG V RRE+GHG LA++ + +V+P +FP+T+ Sbjct: 360 TALSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIP--KEFPFTI 417 Query: 426 RVVSEITESNG 436 RV +E+ ESNG Sbjct: 418 RVTAEVLESNG 428 >UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVX4_PHATR Length = 956 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 173/556 (31%), Positives = 264/556 (47%), Gaps = 96/556 (17%) Query: 243 NARVAALAEARLSDAYR---ITDKQERYAQVDVIKSET----IATLLAEDETLDENELGE 295 N + + + + A + K R + ++++E + + A + + EL Sbjct: 402 NEKNRTVVDQSMGAAIHRGDLPSKTVRGRREQIVQTEIARLVESYVTAAGDAFEPRELQW 461 Query: 296 ILHAIEKNVVR----SRVLAGEPRIDGRE-----KDMIRGLDVRTGVLPR-THGSALFTR 345 + K++++ L G R DGR IR L V+ LP HGSALF R Sbjct: 462 LSEQTTKHLLQKGFVQSALQGGARADGRGLPGHGWKTIRPLKVQMPALPDTVHGSALFAR 521 Query: 346 GETQALVTATLGTARDAQVLDEL-----------MGERTDTFLFHYNFPPYS-------- 386 G+TQ L TATLG D Q + + G T ++ P S Sbjct: 522 GDTQVLCTATLGPPGDGQPMKDPYLATDNPRRVKSGAETTAAGYYSELPVGSLRFLRTQE 581 Query: 387 -----------------VGETGMVGSPKR------------------------REIGHGR 405 G++G + KR R IGHG Sbjct: 582 SLVSDMNSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVPIGSQAHNRRAIGHGA 641 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 LA++ +L V+PD FPY +R+ SE+T+SNGSSSMASVCG +LAL+DAGVPI+ VAG++ Sbjct: 642 LAEKALLPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVS 701 Query: 466 MGLVKEGDN-----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 +GL ++ D + +L DI G ED+ G MDFK+AG+R GI+A Q+D+K + + EI+ Sbjct: 702 VGLARDVDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQLDVK-QLLPLEIVT 760 Query: 521 VALNQAKGARLHILGVMEQAIN---APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR 577 AL A R IL M+ + R + APR+ ++ NP + +D++G GG ++R Sbjct: 761 EALQLACRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQRKRDLVGPGGIILR 820 Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 L + G +++ +G + D E A + ++ A++ G VY G + I DFGA Sbjct: 821 QLEDRYGVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEVYEGTIIEIKDFGA 880 Query: 638 FVAIGGGKEGLVHISQIADKR---------VEKVTDYLQMGQEVPVKVLEVDR-QGRIRL 687 V + KEGL+H+S++ +++ V YL+ GQ+V V +VD QG IRL Sbjct: 881 IVELLRNKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVLCTDVDPVQGSIRL 940 Query: 688 SIKEATEQSQPAAAPE 703 S K + Q A Sbjct: 941 SRKAILVKEQKKAMRR 956 Score = 92.9 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Query: 11 YGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD-------FFPLTVNY 63 + TG +AR ++V+ T V TV Q P D F LTV+Y Sbjct: 58 IEGPPIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTF--LTVDY 115 Query: 64 QERTYAAGRIPGSFFRREGR-PSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSV 120 ++R + G+IP + RR+ S E L +R IDR +RPL + + V +V S Sbjct: 116 RQRYHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTCSVQSY 175 >UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=uncultured bacterium URE12 RepID=C0JZU1_9BACT Length = 316 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 4/308 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-DFFPLTVNY 63 + Q G T+ ETG +A+QA AV + + +T VF K K +F PL+ +Y Sbjct: 8 TRLETQVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCDY 67 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +E+TYAAG+IPG FF+REG+ + E L +RL DR +RPLFP+ F E QV + V+S + + Sbjct: 68 REKTYAAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADGK 127 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 D++++ +SAAL +S IPFNGP+GA R+G N +++ P +E +++LV++GT Sbjct: 128 NEADVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGTR 187 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 +LMVE + + ++ A+ H + + E+ K GK + +N L Sbjct: 188 QGILMVEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPELK 247 Query: 244 ARVAALAEARLSDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLD--ENELGEILHAI 300 A V ++ L KQ A + IK + ++A+ + I+ I Sbjct: 248 AAVEEMSREPLKKLLASRPVKQVLEAGMSEIKDKASDAMVAKYPDDSTASYQAKTIVEDI 307 Query: 301 EKNVVRSR 308 RS Sbjct: 308 IYEESRSL 315 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 106/312 (33%), Gaps = 40/312 (12%) Query: 327 LDVRTGVLPRTHGSALFTR-GETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPY 385 L TG L + G A+ R GET + ++ D Y Y Sbjct: 19 LYFETGELAKQAGGAVTLRLGETIVFSAC----CQASKPKD--TPPEFTPLSCDYREKTY 72 Query: 386 SVGET-----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSM 440 + G+ G + +EI RL R V + PD F +V S + ++G + Sbjct: 73 AAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDY--FNTETQVNSLVISADGKNEA 130 Query: 441 --ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGS 498 S+ +S ALM + +P V + +G K+ ++ +E +M+ ++G+ Sbjct: 131 DVLSINASSAALMISDIPFNGPVGAVRIG--KKNGKFIFFP--QHEERPGLEMELVISGT 186 Query: 499 RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG---VMEQ---------AINAPRG 546 R GI ++ K I + A+ A + I M++ A Sbjct: 187 RQGILMVEGGGKQ--IPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINP 244 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 ++ + + P K V + L + D V D + Sbjct: 245 ELKA---AVEEMSREPLKKLLASRP---VKQVLEAGMSEIKDKASDAMVAKYPDDSTASY 298 Query: 607 HAIRRIEEITAE 618 A +E+I E Sbjct: 299 QAKTIVEDIIYE 310 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 14/240 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR IR + + + R GSA + +G T+ L R+ + Sbjct: 6 EYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVY--GPREVKNKS 63 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 ++ +R Y+ +S GE RR + ++ +V+ +P T + Sbjct: 64 QMKNDRA-IINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVIL-THLYPRTQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A + A+LAL+DAG+P+K V A G ++ L+D+ E Sbjct: 122 DIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGS----PLTDLNYIE 177 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D G D +A D ++ LQMD K ++ + + L A I V+++ + Sbjct: 178 DCAGGPDVPIALLPKHDKVTLLQMDSK---LSLDQFEKVLEHAIEGCKQIHKVIDEQLKK 234 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 15/240 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + RIDGR+K +R + + GVL GSA G+ + L R+ Sbjct: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVY--GPREIHPKH 66 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 +R YN P+SV E G P RR + ++ + + + ++ FP T + Sbjct: 67 LQRPDRA-ILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALI-LEMFPRTAI 123 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ +++ + +A + ASLAL DAG+P++ VA A G ++ ++ D+ +E Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEE 179 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D+ G+ D VA ++ I+ LQMD +T++ A+ A + +A+ Sbjct: 180 DNYGEADVPVAIMPLKNDITLLQMDGY---LTRDEFIEAVRLAIKGAKAVYQKQREALKE 236 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 24/223 (10%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYA 69 + +E G++ + A + V + V G ++ P D L V Y ++ Sbjct: 27 RPIKMEVGVL-KNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRP-----LFPEGFVNEVQVIATVVSVNPQV 124 R++ P I+++I + P +FP + + V+ + Sbjct: 86 VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFP---RTAIDIFIEVLQADAGT 136 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GT 182 + + AS AL+ +GIP + A G I + VL+ ++E + D+ VA Sbjct: 137 R--VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPL 194 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + + +++ + L+ D+ + AV + + V Q E +KE Sbjct: 195 KNDITLLQMDGY-LTRDEFIEAVRLAIKGAKAVYQKQREALKE 236 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 15/239 (6%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR + +R + + GVL GSAL G T+ + R+A + +R Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVY--GPREAHPRHVALPDRA 81 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEIT 432 Y+ P+S E +P RRE+ ++ + + AV+ + +P T + V E+ Sbjct: 82 -IIRCRYHMAPFSTAERKTP-APTRREVELSKVIREALEAVVIS-ELYPRTAIDVYMEVL 138 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL--GD 490 +S+G + A++ ASLAL DAG+ ++ VAG+A+G V + V++ DI ED+ D Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV----DGVLVLDIDEIEDNYAEAD 194 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 M +A S D + LQ++ +T + AL A+ I + ++A+ ++S Sbjct: 195 MPVAMAPSLDKVLLLQLNGV---LTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVS 250 Score = 66.0 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 16/219 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + +E G+++ A + +V T V V G ++A P P + R + A Sbjct: 35 RPIRMEVGVLSN-ADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMA--- 90 Query: 74 PGSFFRREG-RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIAT--VVSVNPQVNPDIVA 130 P S R+ P+ E ++++I + + + V+ + A Sbjct: 91 PFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRT--AA 148 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK----ESKLDLVVAGTEAAV 186 + AS AL+ +GI + VG ++ VL DE++ E+ + + +A + V Sbjct: 149 ITAASLALADAGIAMRDLVAGVAVGKVDGVLVL--DIDEIEDNYAEADMPVAMAPSLDKV 206 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 L+++ L+ D+ + A+ + QV+ E +++ Sbjct: 207 LLLQLNGV-LTHDEFVKALELARKGIQVIYNLQKEALRK 244 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 13/221 (5%) Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R DGR D R + ++ G L GS+ G+ + LV RD + Sbjct: 13 ENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVF--GPRDVHPKH-MSD 69 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVS 429 T Y+ P+SVGE +P RREI ++ K + + ++KFP T V V Sbjct: 70 TDTGILRVRYHMEPFSVGERKNP-APSRREIEISKVIKEALEPAV-MLEKFPRTAVDVFI 127 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 E+ +++G + A++ AS+AL DAG+P++ VA IA G V + V+ D+ +ED G Sbjct: 128 EVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVAD----TVILDVNNEEDQAG 183 Query: 490 --DMDFKVAGSRDGISALQMDIKI-EGITKEIMQVALNQAK 527 DM + + I+ LQ+D + K+ +QV ++ K Sbjct: 184 QADMPIGYMPNLEKITLLQLDGVLTPEEYKKCIQVGVDGCK 224 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 18/216 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP----GQDFFPLTVNYQERTYA 69 + ++ G + + A + + D + V V G + P D L V Y ++ Sbjct: 27 RRIMIKAGGL-KNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHMEPFS 85 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPD 127 G R+ PS E I+++I + P + + V V V+ + Sbjct: 86 VGE------RKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRC- 138 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYV--LNPTQDELKESKLDLVVAGTEAA 185 A+ AS AL+ +GIP + A G + D + +N +D+ ++ + + Sbjct: 139 -AALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEK 197 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINE 221 + +++ + L E+ + G + ++V + + Sbjct: 198 ITLLQLDGVLTPEE-YKKCIQVGVDGCKLVYELQKK 232 >UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q9SP08_ARATH Length = 241 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 14/240 (5%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R+DGR + +R + GV+ + GSA+F G T+ + R+ Q + Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY--GPREIQNKSQQKKN 64 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSE 430 L Y+ +S G+ RR + ++ + A + + P++ + + + Sbjct: 65 DHAVVLCEYSMAQFSTGDRRRQKF-DRRSTELSLVIRQTMEACIL-TELMPHSQIDIFLQ 122 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + +++G + A + A+LAL DAG+P++ + G + N L D+ ED G Sbjct: 123 VLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYL----NSTPLLDLNYVEDSAGG 178 Query: 491 MDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 D V D +S LQMD K + E + A I + + + + Sbjct: 179 ADVTVGILPKLDKVSLLQMDAK---LPMETFETVFALASEGCKAIAERIREVLQENTKQL 235 >UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP41_SCHPO Length = 242 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 13/232 (5%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R DGR D +R R G+ P +GSA G T+ L + + + + Sbjct: 10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIV--DGPSEPVIKSKARAD 67 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSE 430 RT N +S + RR I LA + + + +P + + V Sbjct: 68 RT-FVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQISVYLH 125 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED-HLG 489 + + +G+ + + +LAL+DAG+P+K V G+V+ +L D+ E+ L Sbjct: 126 VLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESD----MLLDLNSLEESALS 181 Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 + V G+ + +Q++ + + ++ +N A HI M+ A+ Sbjct: 182 WLTVAVLGNIKKVVYMQLETSMH---LDYLESVMNMAIAGSEHIYNTMQSAV 230 >UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9TY02_PHYPA Length = 246 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 17/246 (6%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R+DGR +R L GV+P GSALF G TQ + G +L + Sbjct: 9 EGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVV-YGPHEVHNKAHQLHDK 67 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSE 430 Y+ +S GE G RR + + + A + P + + + + Sbjct: 68 ALVR--CEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAI-MTHLLPRSQIDIYVQ 124 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + +++G + A + AS+AL DAG+P++ V A G + N L D+ ED G Sbjct: 125 VLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYL----NSTPLLDLNYQEDSGGG 180 Query: 491 MDFKVA--GSRDGISALQMDIKIEGITKE-IMQVALNQAKG----ARLHILGVMEQAINA 543 D V + +S LQMD K+ T E ++++A AK R +L + + + Sbjct: 181 PDLVVGYFPKLEKLSLLQMDSKVSIETFEKVLELATEGAKAVATFTREKLLEN-TRTLAS 239 Query: 544 PRGDIS 549 RG + Sbjct: 240 ARGHLK 245 >UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698C2E Length = 205 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 99/194 (51%), Positives = 125/194 (64%), Gaps = 5/194 (2%) Query: 149 IGAARVGYINDQYVLNPTQDELKE-SKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVF 207 +GA RVGY + +Y+LN L S LDL+VAGTE AVLMVESEA LSE+ MLGAV+F Sbjct: 9 VGACRVGYKDGEYILNAASTGLSADSDLDLIVAGTEEAVLMVESEANELSEEVMLGAVLF 68 Query: 208 GHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERY 267 GHEQ Q+VI IN L E GK +++ V+EAL A VA AE + DAY I DK ERY Sbjct: 69 GHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLERY 128 Query: 268 AQVDVIKSETIATLLA----EDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDM 323 A D +K T+ L + E+ +E+ L ++K +VR R+L GEPRIDGR+ Sbjct: 129 AAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDTRT 188 Query: 324 IRGLDVRTGVLPRT 337 +R + VRTGVLPRT Sbjct: 189 VRPISVRTGVLPRT 202 >UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=Amniota RepID=C9J2E0_HUMAN Length = 179 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 77/125 (61%), Gaps = 1/125 (0%) Query: 9 FQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ Sbjct: 49 VDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQKAA 107 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 AAGRIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ PD+ Sbjct: 108 AAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDV 167 Query: 129 VAMIG 133 +A+ G Sbjct: 168 LAING 172 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 20/240 (8%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT--ARDAQV 364 + R+DGR + +R + + TGV+ GSA G + +V + + AQ Sbjct: 5 KLINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQN 64 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D+ YN +SV E G P RR + +L + + + +++ P Sbjct: 65 IDKA------IVKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAI-MVERLPRA 116 Query: 425 -VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 + V E+ E++ + +AS+ AS+A+ DAG+P+K G G N V+ D+ Sbjct: 117 EIDVYIEVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTAGKA----NGKVVLDLSK 172 Query: 484 DEDHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 DED+ GD D +A I LQ+D ++++ ++ A+ GA +I + +A+ Sbjct: 173 DEDNYGDADIPMAILPKSGKIILLQLD---GDVSEQELEEAMEMMLGAMKNISRIQREAL 229 >UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G7_9ZZZZ Length = 238 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 15/239 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR+ +R + + GV+P GSA G + + + Sbjct: 8 QMIDENGRRMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKIS 67 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + YN P+S + G RR ++ + +V+ ++ +P + + Sbjct: 68 R---QDRAVLDVRYNMAPFSTTDRIRPGF-NRRSREISKVTSDALESVV-LLEMYPRSKI 122 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 RV EI + + + AS+AL AG+P+ V +A G + N VV+ D+ +E Sbjct: 123 RVEIEILCAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKI----NGVVICDLNKEE 178 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 D+ G+ D + + + LQMD ++ + Q A + A L + +M QA+ Sbjct: 179 DNYGEADLPMGMLPNSGDLVFLQMD---GDLSPDEFQQAWDYNMEAGLAVHEIMVQALK 234 >UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE Length = 245 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR+ +R + R V + GSA +G T+AL + + Sbjct: 5 ELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVY--GPHEIRGSR 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 Y+ +S E R+ K+ A + + +P + + Sbjct: 63 SKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVL-TELYPRSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + +I +++G + A V A+LAL+DAG+P++ V + G V++ L+D+ E Sbjct: 122 DIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVED----TPLADLCHAE 177 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIE-GITKEIMQVALNQAKG 528 + G +A I+ LQMD ++ +M+ A+ K Sbjct: 178 ESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKE 223 >UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelomata RepID=EXOS4_HUMAN Length = 245 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 11/226 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR +R + R GV + GSA +G T+AL + + Sbjct: 5 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSR 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 Y+ +S GE R+ G L R P + + Sbjct: 63 ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMG-LQLRQTFEAAILTQLHPRSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A V A+LA++DAG+P++ V + G V + L+D+ E Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DGTALADLSHVE 177 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIE-GITKEIMQVALNQAKG 528 + G +A + I+ L+MD ++ + +++ A A+ Sbjct: 178 EAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARD 223 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 20/240 (8%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT--ARDAQV 364 + R+DGR + +R + ++TGV+ R GSA G + +V + + AQ Sbjct: 6 KLMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQN 65 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D YN YSV E G P RR + ++ + + + ++K P Sbjct: 66 IDRA------IVKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIV-LEKLPRA 117 Query: 425 -VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 + V ++ E++ + +AS+ +S+A+ DAGVP++ V G G + ++ D+ Sbjct: 118 EIDVFIQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTAGKA----DGKIVLDLSK 173 Query: 484 DEDHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 DED+ G D +A + LQ+D +T+E A + A I + A+ Sbjct: 174 DEDNFGQADIPMAILPRTGKVVLLQLD---GDVTEEEFNEATSMMMDAMPRISELQRNAL 230 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 22/239 (9%) Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 E R D R+ D +R ++ TG++P GSA F G T+A+ + ++++ Sbjct: 3 EERFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKV---N 59 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT---VRVVS 429 + Y+ P+SV + G RR+I ++ + + +++ P VR+ Sbjct: 60 KGIIVCKYDMLPFSVPDRARPGM-DRRDIEISQVITNALNRAVI-LEEMPRAMVNVRIY- 116 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL- 488 IT+++ + AS+ AS+A DAG+P++ VA +A G + + + D+ +E+ Sbjct: 117 -ITQADAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDS----ICLDLTKEEEDFH 171 Query: 489 ----GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D+ + S++ I LQ+D K+ T+E ++ + K + I + + A+ Sbjct: 172 EGGATDVPIALLPSKNEIVLLQLDGKV---TREELKKVIEMGKKGAMEIYELEKAALKR 227 >UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36465 Length = 192 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/148 (50%), Positives = 99/148 (66%) Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 ++AP+I I I+P KI DV+GK G VI + EETG I+I DDG+V + TD + AI Sbjct: 2 KYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARAI 61 Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 I+ I +IE G V GKV RI++FGAFV + K+G+VHIS+++DKRVEKV D + +G Sbjct: 62 EIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNIG 121 Query: 670 QEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 EV V+VLEVD+ GRI LS+K Sbjct: 122 DEVTVRVLEVDKMGRINLSMKPGDMDPN 149 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 32/246 (13%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR+ + IR +++ GV+ + GSA G T A+ L R+ L Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQSNLK------- 53 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEIT 432 Y P++ E +G RREI + + + + ++ PY T+ EI Sbjct: 54 ----VSYRMLPFAGEERKGLGLT-RREIELSYIIAKALEPAII-FEEIPYLTIEASVEII 107 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------------DNYVVLSD 480 +++ + +A++ SLAL AG+P+KA V IA+G V E D+ ++ + Sbjct: 108 KADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKE 167 Query: 481 ILGDEDHLGD---MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 + ++ G+ +D +A ++ I+ LQ+D I+ ++ + A+ K ++ + Sbjct: 168 LPQYYEYYGEGKAVDIPMAMYKNKITLLQLDGSID---RKSLLEAIKLGKDGIKRMIDLQ 224 Query: 538 EQAINA 543 + AI Sbjct: 225 KIAIED 230 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 95/234 (40%), Gaps = 35/234 (14%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 ++ G++++ A + +T V KPG++ L V+Y+ +A Sbjct: 12 RDTEMKIGVISK-ADGSAYCRTGNTIAIAAVYL----KPGREQSNLKVSYRMLPFA---- 62 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 R+ + E ++ +I + + P +F E ++ ++ + + A+ Sbjct: 63 --GEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAGTR--VAAI 118 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT-QDELKESKL--------------- 175 S AL+ +GIP +GA VG + ++ VL+ Q+E +S++ Sbjct: 119 NALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKELPQYYEYYGEG 178 Query: 176 ---DLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 D+ +A + + +++ + + +L A+ G + + +I +++ Sbjct: 179 KAVDIPMAMYKNKITLLQLDGS-IDRKSLLEAIKLGKDGIKRMIDLQKIAIEDY 231 >UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3J3_SCHJY Length = 243 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 97/244 (39%), Gaps = 13/244 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + A R DGR + +R D R GV HGS+ G T+ L + + Sbjct: 6 EVISAEGLRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNV--NGPSEP-YIK 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + NF P+S+ + +R +R + ++ +P + + Sbjct: 63 GKSKQEKAFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAI-QVELYPKSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL-GD 484 + + E +G + + A+LAL+DAG+ + V G+ + VL D+ + Sbjct: 122 SISLNVLEDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIYET----QVLLDLNTNE 177 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 E + M V G++ ++ L+ + K ++ ++ + AL A HI M++ + Sbjct: 178 ESDISWMTVGVLGTKGKVTYLKQETK---LSLDLFEPALTTAIAGCDHIALQMQKVVRQS 234 Query: 545 RGDI 548 + Sbjct: 235 AKTL 238 >UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4SLK0_TETNG Length = 291 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 94/277 (33%), Gaps = 52/277 (18%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG-------TA 359 + RIDGR+ +R + R GV + GSA +G T+AL Sbjct: 5 ELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCV 64 Query: 360 RDAQVLDELMGERTD------TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413 + ++ G R+ Y+ +S E R+ K+ A Sbjct: 65 CVCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEA 124 Query: 414 VMPDMDKFPYT-VRVVS-------------------------------EITESNGSSSMA 441 + FP + + + +I +S+G + Sbjct: 125 AV-MTQLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSV 183 Query: 442 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG--DMDFKVAGSR 499 V A+LA++DAG+P++ V +G V E L+D+ E+ G + + Sbjct: 184 CVNAATLAVIDAGIPMRDYVCACTVGFVDE----TPLADLCYAEESGGVSSLGLALLPRG 239 Query: 500 DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 I+ +QMD ++ + + A A +L Sbjct: 240 GQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDE 276 >UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A4B1C Length = 247 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 9/233 (3%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R DGR+ +R + GV + GSA +G T+ L A G + + Sbjct: 5 ELISDEGYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLA-AIYGPHEASNNMR 63 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + ++ +S E R+ K+ A + +P + + Sbjct: 64 SRVCLDKCFINCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAV-RTQLYPRSQI 122 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ S+GS A V A+LAL+DAG+ +K V + L KE L DI E Sbjct: 123 DIYLQVLHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETS----LIDINHVE 178 Query: 486 DHLGDMDF--KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 + G +F + D I +++ +I + A+ ++ Sbjct: 179 ELAGCAEFSAAIMPKLDQIIYSELNGRIHQDELGQLVDAVTNGCKDIFAVIDR 231 >UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI01_9EURY Length = 246 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 16/240 (6%) Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 +++ R+DGR+ + +R L + G+L +GSA G + L ++A Sbjct: 9 QLIVDGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVY--GPKEATPRH- 65 Query: 368 LMGERTDTFLFHYNFPPY-SVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 L Y+ P+ S+G+ G G P RR I ++ K V+ +++FP + + Sbjct: 66 LADTNKAIIKCRYSMAPFSSMGDHGRSG-PNRRAIEISKVTKEVFENVV-MLEEFPGSEI 123 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + EI +S+G + A + A++AL +AG+ +K V ++ G + D +VV+ D+ E Sbjct: 124 EIFIEILQSDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRI---DEHVVI-DVNMIE 179 Query: 486 DHLGDMDFKV--AGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D+ D D V + + + LQMD G TKE A+ + I V A+ Sbjct: 180 DNYSDADMPVSISPKDNSVLLLQMD---GGFTKEQFGEAMKMILESGKVISKVQRDALKR 236 >UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 Tax=root RepID=EXOS4_CAEEL Length = 240 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 20/251 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL-GTARDAQVL 365 + + RIDGR IR ++ R G+ GS G T+ L + ++ + Sbjct: 2 NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT- 424 ++ + Y+ +S E R+ RL ++ +V+ + FP + Sbjct: 62 EDKCA-----IVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVIL-TEAFPRSQ 115 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + + E+ + +GS+ A V SLAL DAG+P+K + G+V + + D+ Sbjct: 116 LDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVV----DGKPIVDLTSR 171 Query: 485 E--DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 E D L + RD + +++ ++ + + ++ AK + + Sbjct: 172 EETDLLPRVTLATICGRDEVILVELQNRLH---IDHLSTVMDAAKATCADVYECLAVV-- 226 Query: 543 APRGDISEFAP 553 + + AP Sbjct: 227 -AQQHLKACAP 236 Score = 58.3 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 24/182 (13%) Query: 23 MARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFR 79 + R A + + +T V V G + K +D + Y +A + G + Sbjct: 28 LNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQY-----SATKFSGLERK 82 Query: 80 REGRPSEGETLIARLIDRPIRPL-----FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 R T I+RL+++ + FP +++ + V+ + + Sbjct: 83 NRTRGDRKSTEISRLLEKAFESVILTEAFP---RSQLDIFCEVIQGDGSNLA--ACVNAT 137 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKL----DLVVAGTEAAVLMVE 190 S AL+ +GIP G AA G ++ + +++ T +E+ L L V++VE Sbjct: 138 SLALADAGIPMKGIASAATCGVVDGKPIVDLTS--REETDLLPRVTLATICGRDEVILVE 195 Query: 191 SE 192 + Sbjct: 196 LQ 197 >UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME Length = 246 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 18/251 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR +R + + GV + GSA +G T+ L G Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAV-YGP-------H 57 Query: 367 ELMGERTDTFL-FHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT- 424 + G +T++ + Y+ +S E R+ + ++ + A + + +P + Sbjct: 58 QAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKS-ELYPRSQ 116 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + + E+ + +G++ ++ A+LAL+DAG+ + + L K + L+DI Sbjct: 117 IDIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQF 173 Query: 485 EDHLGDMDFKVA--GSRDGISALQMDIKIE-GITKEIMQVALNQAKGARLHILGVMEQAI 541 E+ G VA + + I+ L+M + +++ A+ + R IL + Sbjct: 174 EEVSGGPKLTVAALPTAEKIAFLEMSERFHIDHLGTVIETAMAGCREIR-DILEAAVKEH 232 Query: 542 NAPRGDISEFA 552 G S+FA Sbjct: 233 LLHMGSASDFA 243 >UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleostei RepID=B5XC68_SALSA Length = 277 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 27/271 (9%) Query: 300 IEKNVVRSRVLAGEPRIDGREKD--MIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 + K + + + R+DGR++ +R + VR G++ + GSA G T+ + Sbjct: 21 LCKTAAKKSTASNDARVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVY-- 78 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETG-MVGSPKRREIGHGRLAKRGVLAVMP 416 R+ + DE ++ + F P+S E G + +++ L + + Sbjct: 79 GPRETERKDE-TDMKSGRLITDMRFAPFSCRERGSWIQGSDEKDLSLMLL--ESLRPGV- 134 Query: 417 DMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 + K+P + + V + E++G+ +V AS+AL DAG+ + V G + + +EG Y Sbjct: 135 CLQKYPRSQIEVNVMVLENDGAVLAHAVTCASMALADAGIEMYDLVLGCS--IRQEGATY 192 Query: 476 VVLSDIL---------GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 ++ L G ++LG + S + IS LQ D ++ ++ + + Sbjct: 193 LIDPTFLEENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMG---EDTLTGGVRTC 249 Query: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHT 557 + V++QA++ + AP + Sbjct: 250 IEGCFKLYPVIQQALSKA---VRRKAPPSES 277 >UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NT61_PHYIN Length = 777 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 101/266 (37%), Gaps = 27/266 (10%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT----LGTARDA 362 + R+DGR + +R + R G+ R GS+ + +G T+ + L TA Sbjct: 18 EFISVAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAG 77 Query: 363 QVLDELMG------------ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 V + T + ++ E S R+++ LA + Sbjct: 78 SVNSGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLE-MSLAVKQ 136 Query: 411 VLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 + +P + + + ++ ++G AS+ +LAL+DAG+ + V + G + Sbjct: 137 IFEACIQTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYL 196 Query: 470 KEGDNYVVLSDILGDEDH--LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 ++ +L D+ E+ M + ++ LQM+ K++ E+ + + A Sbjct: 197 QQ----TMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECKLQ---LELFESLMEVAT 249 Query: 528 GARLHILGVMEQAINAPRGDISEFAP 553 I +++ A R + P Sbjct: 250 EGCNQIYDLLQNATMDRRSVSTTRGP 275 >UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NCK3_COPC7 Length = 274 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 14/236 (5%) Query: 309 VLAG-EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 +L R DGR + +R L + GSAL + G TQ LV+ R+A++ Sbjct: 21 ILNDAGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVH--GPREAKMRSH 78 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VR 426 +R +S GE +R + K V+ +P + + Sbjct: 79 TFHDRA-NINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVV-RTSLYPRSQID 136 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + +I + +G + + G +LAL++AG+P+ V I+ G+ + + D+ E+ Sbjct: 137 IYIQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAISGGV----HSTSPMLDLTTLEE 192 Query: 487 HL-GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 + + V + + M+ ++ E + L A+ A + M++A+ Sbjct: 193 NDVPHVTVAVMPKSKKVVLVTMETRLH---VERFEEVLCLARDAAAVLHKEMKEAV 245 >UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 n=2 Tax=Apocrita RepID=UPI00015B5B6C Length = 270 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 11/181 (6%) Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 G R DGR +R + +R GV + GSA +G+T+ L T + + Sbjct: 9 QGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALK 68 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK-RGVLAVMPDMDKFPYT-VRVV 428 Y+ +S G P+ R + R + + +++ F + + + Sbjct: 69 AVKGIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIF 128 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488 E+ + +GS +V A+LAL+DAG+PIK G ++ V ++LGD+D Sbjct: 129 VEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSV---------TVSDNLLGDDDDS 179 Query: 489 G 489 G Sbjct: 180 G 180 >UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54EU6_DICDI Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 16/240 (6%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 + RIDGR + +R ++V G+ R GSA + +G T+ + R+ + Sbjct: 7 ISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVY--GPREI-SVSGK 63 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSP--KRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 ++ +S E R L K+ + + +P + + Sbjct: 64 GVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTI-HTHLYPRSQI 122 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +S+G A++ ++LAL+DAG+ +K + + + D VL D+ E Sbjct: 123 NIYLQVLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCI---DGIAVL-DLNNIE 178 Query: 486 DHLGDMD--FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + G D + G+ +L MD K+ +++ + L + I ++ + Sbjct: 179 ERSGGPDCLLSIQPQIGGVISLNMDSKV---PQDLFESVLELGEKGCKKIFSILSDYVKK 235 >UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6CA11_YARLI Length = 287 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 17/236 (7%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R DGR + IR D + P GS+ G T+ T+ R+ Sbjct: 56 EGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKV--VCTVDGPREPDNRQN--T 111 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVS 429 + N +S +R L ++ + + P T + V Sbjct: 112 TDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLN-PRTQIAVNI 170 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 + +G A + A LA++DAGVP+ V+ + G+ L D+ E+ Sbjct: 171 TVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNA----LIDLNTLEEQDV 226 Query: 490 D-MDFKVAGSRDGISALQMDIKIEGITKE-IMQVALNQAKGARLHILGVMEQAINA 543 + V G D IS L ++ ++ + E ++ +L+ A I +M+ A+ Sbjct: 227 PFLTIGVIGKSDKISMLTLETQLPMASLEPVLATSLSGAHA----IQDIMDAAVRK 278 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 24/217 (11%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKA---KPGQDFFPLTVNYQERTYAAGRIPGSFFRR--- 80 A + V T V TV G ++ + D ++VN +++ + +R Sbjct: 82 ADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVISVNVNVASFST----ETRIKRQRN 137 Query: 81 EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 + R +E LI +L++ + L ++ V TV++ + + P + A A+ Sbjct: 138 DKRLAEMNILIRQLLEEAV--LTKLNPRTQIAVNITVIAQDGGLLP--ACINAACLAMID 193 Query: 141 SGIPFNGPIGAARVG-YINDQYV-LNPTQDELKESKLDLVVAGTEAAVLM--VESEAQLL 196 +G+P + A G Y N+ + LN T +E L + V G + M +E++ + Sbjct: 194 AGVPLTDYVSACSSGVYSNNALIDLN-TLEEQDVPFLTIGVIGKSDKISMLTLETQLPMA 252 Query: 197 S-EDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD 232 S E + ++ H Q ++ V++ GK R + Sbjct: 253 SLEPVLATSLSGAH-AIQDIMDA---AVRKHGKHRLE 285 >UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome n=1 Tax=Pichia pastoris GS115 RepID=C4R4E4_PICPG Length = 246 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 15/235 (6%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R+DGR + +R R P GSA G T+ + L + Sbjct: 7 EGLRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCL--LNGPHEPTRSQMNTQ 64 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV-RVVS 429 + + H + P+S E V RR + K V+ + +P T+ V Sbjct: 65 KGSLDIKLHVS--PFSTTERRKVTRNDRRIQELSTILKNTFEQVVI-LKNYPRTIIEVNV 121 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED-HL 488 + +G A +LAL+DAG+ + ++ ++ G+ + +L D+ E+ L Sbjct: 122 RVLAQDGGLLAACCNAITLALVDAGIALYDYISAVSAGVF----DNQILLDLNRLEEQDL 177 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + V G +S + + + + ++ + A + M+ + Sbjct: 178 SSVTIGVVGKTKKLSLVLSETR---LPQDRLAKVFEVAVNGCHQLKDQMDAQVAK 229 >UniRef50_Q0PQM6 Polyribonucleotide nucleotidyltransferase (Fragment) n=2 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQM6_9GAMM Length = 137 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 67/106 (63%), Positives = 82/106 (77%) Query: 497 GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIH 556 G+ GI+ALQMDIKI GITKEIM++AL QAK RLHIL M + I++ RG++SE APRI Sbjct: 29 GTAQGINALQMDIKINGITKEIMEIALEQAKEGRLHILDEMNRVISSHRGEMSEHAPRII 88 Query: 557 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 IKINPDKI+DVIGKGG IR +TE TG T++I DDG VKI + + Sbjct: 89 EIKINPDKIRDVIGKGGVTIRGITEATGATVDITDDGIVKIFSVEQ 134 >UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GAV6_PHATR Length = 274 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 23/263 (8%) Query: 313 EPRIDGREKDMIRGLDVRTGVLP--RTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R DGR+ IR + V+ L GSAL G T L T G + DE Sbjct: 15 NLRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATV-RGPVDCLRRADENPD 73 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSP--KRREIGHGRLAKRGVLAVMPDMDKFPYT-VRV 427 + P+S V +P RR I + KR + A + + +P + + + Sbjct: 74 QAVLDVTVQS--APFSSSADRRVANPKTDRRLIEASHMLKRAMEAAIL-LHLYPKSRIEL 130 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL----VKEGDNYVVLSDILG 483 V + +G A++ A+LALMDAG+P+K V + GL + + L D+ Sbjct: 131 VVSVLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLNR 190 Query: 484 DEDHLGD------MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 E+ M + R+ + Q + ++ + ++ L+ A + ++ Sbjct: 191 QEESSTGGQAATHMPVALLPQRNTLVLAQCEARLP--NLDTLERVLDAATEGCRAVFDIL 248 Query: 538 EQAINAPRGDISEFAPRIHTIKI 560 + A+ + A R T +I Sbjct: 249 QAAVREHAATV--LAARSGTTRI 269 >UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94_NEMVE Length = 268 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 18/239 (7%) Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 + R DGR D +R + +R GV+ + GSA T+ + R+A E Sbjct: 29 LIRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIY--GPREAPRRQE 86 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VR 426 + F P+S E + L + + + ++KFP V Sbjct: 87 FSM--KGRLTCEFKFAPFSCIYR-RKHIQDAEEKENSYLVVQALEPAV-CLEKFPKAQVD 142 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + + E++GS+ A + AS+AL AG+ + V+ M + DN+ +L D E Sbjct: 143 IYITVLENDGSALSAGIICASVALAMAGIEMLDLVSACTM---VQSDNH-ILMDPCEKEI 198 Query: 487 HLGDMD----FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 H + S + +S L ++ +T++ AL+ IL +M+QA+ Sbjct: 199 HSSSASGHTMVAILPSLNVVSGL---VQEGELTQDAATKALSSCIEGCARILPIMQQAL 254 >UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleostomi RepID=EXOS6_DANRE Length = 271 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 105/258 (40%), Gaps = 35/258 (13%) Query: 319 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLF 378 R +R + R G++ + GSA G T+ + + ++ + DE +T + Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVY--GPKETERRDE-TDMKTGRLVC 93 Query: 379 HYNFPPYSVGETG-MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNG 436 + P+S + G + + R++ + + + ++P + + V + E++G Sbjct: 94 DFRLAPFSCVKRGAWIQGSEERDL--SATLMESLRPGV-CLHRYPRSQIDVNVMVLENDG 150 Query: 437 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE----------D 486 S +V AS+AL DAG+ + V G L + G+ +V D E D Sbjct: 151 SVLAHAVTCASMALADAGIEMYDIVLGCT--LRQSGNACLV--DPSYAEECGSWQEGYGD 206 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 + G + + + + +S L D ++ ++ + A+ + V++QA+ Sbjct: 207 NQGCVTLALLPNLNQVSGLNADGEMR---EDTLTEAMRTCMDGCHKLYPVVQQALTRA-- 261 Query: 547 DISEFAPRIHTIKINPDK 564 + + AP P+K Sbjct: 262 -VKKKAP-------PPEK 271 >UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXA3_9CLOT Length = 388 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 8/124 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D V I + D E K A+ E + + ++G V G+V ++ FGAFV Sbjct: 245 VSVGDKVEVYILSVDKENNKIALALKDVNENPWESVGNKFKIGDVVEGEVLKLASFGAFV 304 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 I G EGLVHIS+I+++R+ K +D L +G +V VK+L++D ++ RI LSIK+A E+ + Sbjct: 305 EIQPGVEGLVHISEISEERIAKPSDVLNLGDKVRVKILDIDNKENRISLSIKDAVEKPKE 364 Query: 699 AAAP 702 Sbjct: 365 DLDK 368 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 I F P + +K IGK T IE + D + + + Sbjct: 137 IRAFIPASQLSLSYVEDLKSFIGK---------TLTVKVIEFDKDKEKVVLSRKVIEKAE 187 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 A + + + I+ G +G V+R+ FGAFV +G G +GL+H+S+++ KRV D + Sbjct: 188 AEEKKQHLLNSIKPGEKRSGVVSRLAKFGAFVDLG-GVDGLIHVSELSWKRVNNPADVVS 246 Query: 668 MGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +G +V V +L VD++ +I L++K+ E + + + E Sbjct: 247 VGDKVEVYILSVDKENNKIALALKDVNENPWESVGNKFKIGDVVE 291 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D K + IE I G V GK+ + + A V IG +G++ S++ + Sbjct: 6 KDTNSMKEFMEDIESSMKSIRRGEVVKGKIISVTENHAIVNIGYMSDGILSKSEVVENEE 65 Query: 660 EKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATE-QSQPAAAPEAPAAEQGE 711 + ++D L+ +E+ V VL++ D +G + LS K A + ++ E Sbjct: 66 DNLSDILKENEEIYVYVLDMNDGEGNVLLSKKAADKIKAWDELKKAFEEKSDVE 119 >UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHT6_ANAPD Length = 686 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 8/130 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 E + + D+ VKI + EK + + + E + EVG V TGKV + Sbjct: 502 VEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNL 561 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 +DFGAFV + G EGLVH+S+I+ + VEK +D L +G E+ VK++ +D + ++ LSIK Sbjct: 562 LDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKVGLSIKA 621 Query: 692 ATEQSQPAAA 701 E + Sbjct: 622 LKEAPERPER 631 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRIE-------EITAEIEVGRVYTGKVTRIVDFGAFVAI 641 + ++ +KI + D K + + R E + E+E G+V TGKV R+ DFGAFV + Sbjct: 426 VGEEWDLKIISIDERKNRLVLSRKEVVEDELDGLWEELEEGQVVTGKVARLTDFGAFVEV 485 Query: 642 GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAA 700 G +GL+H+S IA RVE +D L +G E+ VK+L+++ + RI L K+ E+ A Sbjct: 486 -NGLDGLLHVSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAF 544 Query: 701 APEAPAAE 708 + + Sbjct: 545 VNQHEVGD 552 Score = 61.7 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 +++ D + + +E+ +I + G V + D FV I +G++ + ++ + Sbjct: 271 VSSMDEFTKEEFMNSLEDSLKKIYPKEIVKGTVIDVKDDEVFVDIQFRADGIIKLDEMTE 330 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT-EQSQPAAAPEAPAAE 708 + + + +G E+ V V+++D +G + LS + + A +A E Sbjct: 331 EEAKDPKNSFNVGDEIDVFVIKLDDGEGNVSLSTRRVEGMKVWKDLAEKAENDE 384 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 9/124 (7%) Query: 587 IEIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK 645 I+++D +G V ++ E K +++ + E + G V+ G V + G Sbjct: 351 IKLDDGEGNVSLSTRRVEGMKV----WKDLAEKAENDELVHGVVSGFNKGGLTVNVE-GI 405 Query: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 G V SQIA V+ + +G+E +K++ +D + R+ LS KE E E Sbjct: 406 NGFVPASQIATYFVKNFKKF--VGEEWDLKIISIDERKNRLVLSRKEVVEDELDGLWEEL 463 Query: 705 PAAE 708 + Sbjct: 464 EEGQ 467 >UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A29C6 Length = 226 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 9/157 (5%) Query: 376 FLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITES 434 Y+ +S GE R+ G ++ A + P + + + ++ ++ Sbjct: 53 VNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAIL-TQLHPRSQIDIYVQVLQA 111 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 494 +G + A V A+LA++DAG+P++ V + G V + L+D+ E+ G Sbjct: 112 DGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTALADLSHVEEAAGGPQLA 167 Query: 495 VA--GSRDGISALQMDIKIE-GITKEIMQVALNQAKG 528 +A + I+ L+MD ++ +++++ A A+ Sbjct: 168 LALLPASGQIALLEMDARLHEDHLEQVLEAAARAARD 204 >UniRef50_C0DB62 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DB62_9CLOT Length = 259 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 10/173 (5%) Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 + I ++ + A D+ F P +K++D GK VI +T +T Sbjct: 74 VKIAEAVKAGVVAYVDDVRAFIPASQLSTEYVEKLEDWQGKNIDVI-VITADT------- 125 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 + + ++ + EK + R E++ A+ + G V G V + ++GAF+ + G +GL+H Sbjct: 126 EKKRLVLSGREVEKERKEAERKEKL-AQFKAGDVVEGTVDSLKNYGAFIKLADGVDGLLH 184 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 +SQI+ +R++ L+ GQ V VK+L V G+I LS+K T + E Sbjct: 185 VSQISTQRIKHPGVVLKEGQSVKVKILSV-ADGKISLSMKALTAPVEDEEQHE 236 >UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW Length = 687 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 34/243 (13%) Query: 501 GISALQMDIKIEGITKEIMQVALNQ------------AKGARLHILGVMEQAINAPRGDI 548 GI A +E + + +N+ + +L E Sbjct: 442 GIVAFLPASHVEDGYVKNLDEYINRELSFKIIEFNRNKRRGSQVVLSRKELVAEEKAKQK 501 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGG--------------SVIRALTEETGTTIEIEDDGT 594 +F I ++ +IK ++ G + ++ ++ ++ Sbjct: 502 KQFWEEIEEGQVRKGRIKRLVDYGAFIDLGGYEGLLHVSEIAHTRIDQPSDVLQEGEEID 561 Query: 595 VKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 V I A D EK + ++ R E + + + G + G V RI FGAFV I G +G Sbjct: 562 VYILALDREKERVSLSRKKLLKSPWEIVMEKFQEGDIIEGTVVRIAPFGAFVEIEAGVDG 621 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPA 706 LVHISQ+A+ RVEK D +Q+ +++ +K+L +D + RI LS+KEA + + + Sbjct: 622 LVHISQLANHRVEKPEDVVQVNEKIKIKILSIDPEEKRIGLSLKEALNEMENQEVQDYME 681 Query: 707 AEQ 709 ++ Sbjct: 682 KQE 684 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 66/108 (61%), Gaps = 2/108 (1%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A+ ++ ++ EIE G+V G++ R+VD+GAF+ +G G EGL+H+S+IA R+++ +D Sbjct: 494 AEEKAKQKKQFWEEIEEGQVRKGRIKRLVDYGAFIDLG-GYEGLLHVSEIAHTRIDQPSD 552 Query: 665 YLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 LQ G+E+ V +L +DR+ R+ LS K+ + + + E Sbjct: 553 VLQEGEEIDVYILALDREKERVSLSRKKLLKSPWEIVMEKFQEGDIIE 600 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 + ++ET T EI++ + + + E + + T G V GKV + Sbjct: 287 NQETNQETSQETQETQEIQEPEVKEEVSANEESFAKLEAEMADFT-TPNKGDVIKGKVIQ 345 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 ++D V +GG EG++ + +++ + ++ + +++G E+ V VL+ D G I LS K+ Sbjct: 346 VLDDEVMVDVGGKSEGIIPLREMSLQDIDSAKELVEVGDEIEVMVLKWDDDGTILLSKKK 405 Query: 692 ATEQ 695 + Sbjct: 406 VDAK 409 Score = 56.3 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Query: 582 ETGTTIEI-----EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 E G IE+ +DDGT+ ++ K A ++E+ + G+V TG VT V G Sbjct: 381 EVGDEIEVMVLKWDDDGTILLSK----KKVDAKILLDELEESFKEGKVITGTVTGSVKGG 436 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR----IRLSIKEA 692 V + G + S + D V+ + +Y+ E+ K++E +R R + LS KE Sbjct: 437 LLVDV--GIVAFLPASHVEDGYVKNLDEYINR--ELSFKIIEFNRNKRRGSQVVLSRKEL 492 Query: 693 TEQSQPAAAPEA-PAAEQGE 711 + + + E+G+ Sbjct: 493 VAEEKAKQKKQFWEEIEEGQ 512 >UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes RepID=B3WE79_LACCB Length = 439 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 IE ++ + E +K R+ EI A+I+ G GKV R+ +FGAFV +G G Sbjct: 168 IEIEPSENRLILSHRAIVEASKAEARK--EIFAKIQPGDTVEGKVARLTNFGAFVDLG-G 224 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 +GLVH+S+I+ V+K +D L++GQE+ VKVL VD + RI LSIK Q + Sbjct: 225 VDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEK 284 Query: 704 APAA 707 APA Sbjct: 285 APAG 288 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 ++ +++ + VK+ D ++ + + + ++I + G V TG V R+ Sbjct: 239 VDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGSVLTGTVKRL 298 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 FGAFV + G EGLVHISQI+ + V D L+ GQEV VKVL VD R+ LSIK Sbjct: 299 TTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKVLSVDPDAHRLALSIKA 358 Query: 692 ATEQS 696 E+ Sbjct: 359 LQERP 363 Score = 59.0 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 12/153 (7%) Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 P D I DV G + + G +++G ++ E K Sbjct: 54 VPIKELSTQPIDDIHDVAKVGDKLDLVVLSTVGKD---KENGQFLLSKRRLEAQKV---- 106 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 +EI A+ E G T VT +V G V G G V S + D VE ++ Y G+E Sbjct: 107 WKEIQAKYEAGETITAPVTSVVKGGLVVN--AGVRGFVPASMVEDHFVEDLSQY--KGKE 162 Query: 672 VPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 + K++E++ + R+ LS + E S+ A E Sbjct: 163 LEFKIIEIEPSENRLILSHRAIVEASKAEARKE 195 Score = 49.4 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 +++G V + D V I G G EG+V I +++ + ++ + D ++G ++ + VL Sbjct: 23 VKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVL 82 Query: 678 E---VDRQ-GRIRLSIKEAT-EQSQPAAAPEAPAAE 708 D++ G+ LS + ++ + A E Sbjct: 83 STVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGE 118 >UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2UNC2_AKKM8 Length = 270 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 22/246 (8%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R D R D +R + TG+ P S L T G T+ + T+ D ++ Sbjct: 11 ERQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTI--EEDVPRWMKVQRVEG 68 Query: 374 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y+ PYS + G R RL R + A + T+ V Sbjct: 69 GWLTAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDC 128 Query: 430 EITESNGSSSMASVCGASLALMDA-------G----VPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ GAS+AL A G P+K V+ +++G+++ L Sbjct: 129 DVLQADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEA----L 184 Query: 479 SDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED ++D + + G +Q + T + M L + I + Sbjct: 185 LDLCYVEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQ 244 Query: 538 EQAINA 543 Q I Sbjct: 245 RQVIAE 250 Score = 59.0 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 99/247 (40%), Gaps = 45/247 (18%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA--------------KPGQDFFPL 59 ++ ETG +A ATA+V+V+ T V V ++ P Sbjct: 22 RPISFETG-IAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWLTAEYSMLPY 80 Query: 60 -TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGF--VNEVQVIAT 116 T++ + R AG++ +GR SE I RLI R +R G + V Sbjct: 81 STLDRKRRDITAGKL-------DGRSSE----IQRLIGRSLRAAVDLGKIGQRTIWVDCD 129 Query: 117 VVSVNPQVNPDIVAMIGASAALSL-----------SGIPFNGPIGAARVGYINDQYVLNP 165 V+ + ++ GAS AL++ + P + A VG + + +L+ Sbjct: 130 VLQADGGTRT--ASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDL 187 Query: 166 TQDELKESKLDLVVAGTEAA-VLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINEL 222 E K++++D+ + T+ + V+ + + DQM + G + + + + ++ Sbjct: 188 CYVEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQV 247 Query: 223 VKEAGKP 229 + E +P Sbjct: 248 IAEEDRP 254 >UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=8 Tax=Bacteria RepID=D1PP74_9FIRM Length = 639 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 22/235 (9%) Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 D++ +D L D+ ++G+ L ++ ++ M+ A+ + VME Sbjct: 345 DLVKVDDEL-DLVVVKTNDQEGVDTL---SRVRFEAQKGMKDVAEAAENGTVMEGDVMEA 400 Query: 540 AINAPRGDI---SEFAPRIH-TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 ++ F PR T++ + D K V G V +TE G I G++ Sbjct: 401 NKGGVVVNVKGVRVFVPRSQATMRRDEDYTKLV---GQHVKLVITECAGRKIV----GSI 453 Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 + KAK EE A +EVG+ Y G V + +GAFV IG G +GL HIS+++ Sbjct: 454 NKVTAEANKAKR-----EEFWANVEVGKKYQGVVKSLTSYGAFVDIG-GVDGLCHISELS 507 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 ++ ++ + +G E+ V V D + ++ L K+ + E P + Sbjct: 508 WSNIKHPSEVVNVGDEIEVYVKSYDPENQKVSLGYKKEEDNPWVKLENEVPVGTE 562 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEE-------ITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ V + + D E K ++ +E + E+ VG +T V I FGAFV Sbjct: 518 VNVGDEIEVYVKSYDPENQKVSLGYKKEEDNPWVKLENEVPVGTEFTAPVVSITKFGAFV 577 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 I G +GLVHIS+I+++RV KV+D L++G EV VK+ VD + RI LS+K + + Sbjct: 578 RIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVKLTNVDFDRKRISLSMKACLNEDES 637 Query: 699 AA 700 A Sbjct: 638 AE 639 >UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group RepID=A9VBQ1_MONBE Length = 1336 Score = 126 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 13/203 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 VL R++G D +R + + GV + GSA +G T+ L DA+ Sbjct: 25 RLVLLPARRVEG--DDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDAR--- 79 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 T + + +S + R+ G R + +V+ T+ Sbjct: 80 GPNASGHLTVSCEFIYASFSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTIN 139 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + ++ +++G ++ ASLA+MDAGVP+K + G+++ V + D E Sbjct: 140 LNVQVLQADGGVLATAINAASLAMMDAGVPMKDFLCACNAGVLEG----VAVLDTNHSE- 194 Query: 487 HLG---DMDFKVAGSRDGISALQ 506 L D+ V + I Q Sbjct: 195 ALARGPDLTVAVMPRTNTIVLNQ 217 >UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSU3_CHLT3 Length = 616 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + ++D V + D +K + + E I + G TGKV I D+GAFV Sbjct: 263 VNLDDPIKVVVIGYDADKQRVSLGMKQLTPHPWENIEEKYPAGTRVTGKVVSITDYGAFV 322 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 I G EGLVHIS+++ + ++ ++ MGQEV +L +D++ ++ LS+K+ E Sbjct: 323 EIEKGIEGLVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTKLSLSMKQTEEDPW 382 Query: 698 PAAAPEAPAAEQ 709 A + P + Sbjct: 383 IVLAEKYPVDSE 394 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 2/101 (1%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 R +E+ A I+VG V G V I DFG FV +G G +GLVHI+ I R+ ++ + + Sbjct: 208 ARRKEMLANIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRISHPSEAVNLD 266 Query: 670 QEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 + V V+ D R+ L +K+ T + PA + Sbjct: 267 DPIKVVVIGYDADKQRVSLGMKQLTPHPWENIEEKYPAGTR 307 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEE-------ITAEIEVGRVYTGKVTRIVDFGAFV 639 + + + I D E K ++ + + + V + G V I DFG FV Sbjct: 350 VTMGQEVECVILNIDKEHTKLSLSMKQTEEDPWIVLAEKYPVDSEHKGIVRNITDFGVFV 409 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G +GLVHIS ++ K++ ++ ++ QE+ VKVL+ D + RI L K+ Sbjct: 410 ELESGVDGLVHISDLSWTKKIRHPSEIVKKNQELDVKVLKFDVKARRIALGHKQIEPDPW 469 Query: 698 PAAAPEAPAAEQ 709 + + Sbjct: 470 SDFENDYAVGTE 481 Score = 68.7 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIE-----EITAEIEVGRVYTGKVTRIVDFGAFV 639 E D V + ++IE + + VG GK+ +I++ G V Sbjct: 437 VKKNQELDVKVLKFDVKARRIALGHKQIEPDPWSDFENDYAVGTETKGKIAQIIEKGVIV 496 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLS----IKEATE 694 + G +G V S + V + ++G E+P+KV+E DR+ RI LS K ++ Sbjct: 497 ELPSGVDGFVPASHLLQGGVRDINASFKVGDELPLKVIEFDRENKRIILSALEYFKGKSK 556 Query: 695 QSQPAAAPEAPAAEQ 709 + + P +Q Sbjct: 557 EEIEEYMKQHPKEKQ 571 Score = 45.2 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 ++ +E +D ++ + + +R E+I +E G + +GK+ V G V+ Sbjct: 94 DDVEVFLESIEDKMGQLILSKRKA--DVMRIWEKIYDSLEKGTIISGKIIARVKGGMTVS 151 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPA 699 + G E + SQI K V +GQ + +V++++ I +S K E+ A Sbjct: 152 L-SGVEAFLPGSQIDVKPVRDFDAL--VGQTMDFRVVKINPLTQNIVVSHKVILEEEYEA 208 Query: 700 AAPE 703 E Sbjct: 209 RRKE 212 >UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX74_ARATH Length = 239 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 18/173 (10%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR + +R L +L R HGSA +++G+T+ L A E + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAG------TKKNENAE 58 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKR-GVLAVMPDMDKFPYTVRVVSEITE 433 F + P S G+ G V K E+ R + VL V P+ T V+ ++ Sbjct: 59 KACFEVIWKPKS-GQIGKV--EKEYEMILKRTIQSICVLTVNPNT-----TTSVIIQVVH 110 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 +GS ++ A AL+DAG+P+K I L + G Y+VL D E+ Sbjct: 111 DDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENG--YLVL-DPNKLEE 160 >UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridia RepID=A4J3N5_DESRM Length = 672 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 5/134 (3%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKA--KHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 + L +E + IE + K + + R+ EE+ A ++ G++ G V RI + Sbjct: 425 KYLNQEFEVRV-IEMNKQRKKVVVSRKAVLEEQNARKREELLASLQEGQIVKGIVRRITN 483 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT 693 FGAFV +G G +GL+HIS+++ R+ + +++G E+ V VL+VD Q +I L +K+ Sbjct: 484 FGAFVDLG-GLDGLLHISEMSWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVL 542 Query: 694 EQSQPAAAPEAPAA 707 + P Sbjct: 543 PNPWDNVEEKYPVG 556 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ V + D + K + + + + VG ++ KV R+ FGAFV Sbjct: 514 VKVGDELEVMVLKVDTQNEKISLGLKQVLPNPWDNVEEKYPVGNIFNAKVVRLAPFGAFV 573 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 + G EGLVHIS +AD+ VEK D ++ G+EV VKVL +D + R+RLSI+E + + Sbjct: 574 QLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMDPSEKRVRLSIREVNGE-RR 632 Query: 699 AAAPEAPAAEQ 709 +A P ++ Sbjct: 633 SAREARPRKQE 643 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%) Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 M++ + R PR D +++++ G + I+ ED+ Sbjct: 310 MDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEI-------ECVVIKAEDNEGKI 362 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 I + + A+ A +EE + G + G V +V G V + G + S + Sbjct: 363 ILSKERADAEKAWDGLEEAMEQ---GTIIKGVVREVVKGGMLVDV--GVRAFLPASLVER 417 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 VE ++ YL QE V+V+E+++ + ++ +S K E+ E Sbjct: 418 GYVEDLSKYLN--QEFEVRVIEMNKQRKKVVVSRKAVLEEQNARKREE 463 Score = 56.7 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 3/139 (2%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G I LT T I ++ ++ D + G + G V ++ Sbjct: 249 GHEIVGLTAGASTPDAIIEEVKKRMNEMDQMTNGEEGMSEAMEVKSPQAGELVKGIVVQV 308 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKE 691 V I EG++ ++A V+ + + +++G E+ V++ D +G+I LS KE Sbjct: 309 GMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVIKAEDNEGKIILS-KE 367 Query: 692 ATEQSQPAAAPEAPAAEQG 710 + + E A EQG Sbjct: 368 RADAEKAWDGLEE-AMEQG 385 >UniRef50_Q2RIU7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RIU7_MOOTA Length = 736 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IE++ + + + ++ + +EVG+V G V R+ +FGAFV +G G + Sbjct: 503 IELDRSKNKVVLSRKAILEEEYEKQRQATWNSLEVGQVRKGIVRRLTNFGAFVDLG-GVD 561 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAP 705 GL+H+S+I+ RVE D L GQE+ VK+L +D +G++ L K+ AA P Sbjct: 562 GLLHVSEISWGRVEHPRDALSEGQEIEVKILGIDREEGKVSLGRKQLLPNPWDTAAERYP 621 Query: 706 AA 707 Sbjct: 622 VG 623 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 10/142 (7%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRI 632 E + + VKI D E+ K ++ R + VG + GK+ R+ Sbjct: 574 VEHPRDALSEGQEIEVKILGIDREEGKVSLGRKQLLPNPWDTAAERYPVGTIVEGKILRL 633 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKE 691 FGAFV + G EGLVHISQ+AD+ V+K D + +G +PVKVL VD+Q R+ LS+++ Sbjct: 634 APFGAFVEVEPGIEGLVHISQLADRHVDKPEDVVSIGDIIPVKVLGVDQQAQRMSLSLRQ 693 Query: 692 A-TEQSQPAAAP-EAPAAEQGE 711 A E+++ A P E PA Q E Sbjct: 694 AIREKNRKQAKPAEKPAENQNE 715 Score = 69.0 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E+ ++ +++I E+ G V G V +I D V +GG EG++ +++++ + V Sbjct: 346 EEQRNEMQQITARMPELRRGNVVAGTVVQITDNEVMVDVGGKSEGVIPLNELSHRNVTDP 405 Query: 663 TDYLQMGQEVPVKVLE-VDRQGRIRLSIKEATEQ-SQPAAAPEAPAAEQGE 711 + + +G + V VL + +G LS + A + + + E+ + Sbjct: 406 HEVVAVGDTINVMVLRPENEEGHPVLSKRRADRRVAWEKLEEHLASGEEIQ 456 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 20/184 (10%) Query: 535 GVMEQAINAPRGDISEFAPRIHTIKI-NPDKIKDVIGKGGSVI------RALTEETGTTI 587 M+Q ++I + + + DV GK VI + + Sbjct: 350 NEMQQITARMPELRRGNVVAGTVVQITDNEVMVDVGGKSEGVIPLNELSHRNVTDPHEVV 409 Query: 588 EIEDDGTVKIAATDGEKAKHAIRR--------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + D V + + E+ + + E++ + G G+V +V G V Sbjct: 410 AVGDTINVMVLRPENEEGHPVLSKRRADRRVAWEKLEEHLASGEEIQGEVIEVVKGGLLV 469 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 + G G + S + VE + YL GQ + ++V+E+DR + ++ LS K E+ Sbjct: 470 DV--GVRGFLPASLVERGYVEDLNAYL--GQTLRLRVIELDRSKNKVVLSRKAILEEEYE 525 Query: 699 AAAP 702 Sbjct: 526 KQRQ 529 >UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWY2_HALOH Length = 678 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 +H + ++D+ G +R IE+E D + + + ++ E+ Sbjct: 418 VHASHVAIGYVEDLSDYVGKTLRL------KVIEVERDKNNVVLSAKKVLEEEREKQKEK 471 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 E++ G+V GKVT+IVDFGAFV +G G EGL+HIS+++ R+E ++ L+ GQE+ V Sbjct: 472 TLEELQEGQVVKGKVTKIVDFGAFVDLG-GIEGLLHISEMSWGRIEHPSEVLEEGQEIEV 530 Query: 675 KVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 KVL V++ + RI L +K+ A + E Sbjct: 531 KVLAVNKEEERISLGLKQLLPDPWEEFAKKHYEGE 565 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 8/137 (5%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 E +E + VK+ A + E+ + + EE + G V +G +T+I Sbjct: 515 IEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLPDPWEEFAKKHYEGEVVSGTITKI 574 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 VDFGAF+ I G EGL+HISQ++ + V+ + + +G+E+ +++ +D Q R+ LSIK Sbjct: 575 VDFGAFMEIENGIEGLIHISQLSHRHVKTPDEVVSVGEEIKAEIINIDPEQKRVGLSIKA 634 Query: 692 ATEQSQPAAAPEAPAAE 708 EQ + EAP E Sbjct: 635 LEEQPETPKKVEAPKKE 651 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 2/136 (1%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 L EE + ++ + + + + A+++ G+ GKV I D G Sbjct: 262 ELQEEIQEGVNTDNTPETPNGEENPIENEEEFNYDDNNPADLKKGQQVKGKVVEIGDNGV 321 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEAT-EQ 695 +V +G EGL+ + +++ + E + ++ G+E+ V VL + D +G + LS K A E+ Sbjct: 322 YVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIVLTLEDEEGNMVLSKKRADFEK 381 Query: 696 SQPAAAPEAPAAEQGE 711 + E E Sbjct: 382 AWERILKAYENDEIIE 397 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 8/121 (6%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 ++ E + +ED+ + + + A RI E + +VTR V Sbjct: 348 EIVEEGEEIDVIVLTLEDEEGNMVLSKKRADFEKAWERI---LKAYENDEIIEAEVTREV 404 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 G V I G G VH S +A VE ++DY +G+ + +KV+EV+R + + LS K+ Sbjct: 405 KGGLVVDI--GLRGFVHASHVAIGYVEDLSDY--VGKTLRLKVIEVERDKNNVVLSAKKV 460 Query: 693 T 693 Sbjct: 461 L 461 >UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales RepID=D2R4L6_9PLAN Length = 600 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I+ + V + D EK K A ++ + VG V G V ++ +GAFV Sbjct: 262 VAIDQEIEVMVLHIDREKKKIALGLKQKEGNPWADVDTKYPVGTVVKGSVVNVMSYGAFV 321 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 + G EGLVHIS+++ +RV ++ + +G E+ V +L VD+ G ++ L +K+ E Sbjct: 322 KLEPGIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQTQENPW 381 Query: 698 PAAAPEAPAA 707 A + P Sbjct: 382 TRVAEKYPVD 391 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 9/116 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIE--------EITAEIEVGRVYTGKVTRIVDFGAF 638 +E KI + D E+ + A+ + +I + + G+V +G VT+I +FG F Sbjct: 436 LEKGQPVRCKILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTKITNFGVF 495 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 V + G EGL+HIS++AD +VE D +++G ++ VK+L VD + +I LS K Sbjct: 496 VGLEDGLEGLLHISELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLSRKRVE 551 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D+ +V I D + + + + + V + GKV + ++GAFV Sbjct: 349 VNIGDEISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVEGKVRNLTNYGAFV 408 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G +GL+H+S ++ R + ++ L+ GQ V K+L VD + RI L +K+ E Sbjct: 409 ELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPW 468 Query: 698 PAAAP 702 P Sbjct: 469 ARDIP 473 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 ++I++ + + + E + E+E+G+V G V I +FGAFV +G G + Sbjct: 184 LKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFGAFVDLG-GID 242 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAP 705 GL+HI+ ++ +R+ ++ + + QE+ V VL +DR+ +I L +K+ + P Sbjct: 243 GLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLKQKEGNPWADVDTKYP 302 Query: 706 AA 707 Sbjct: 303 VG 304 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G ++R L E+ +DG + + K + +E+ I+ G+V TG V+R Sbjct: 86 GQLVRVLIEDLEDETAAPEDGGMVRISKRKAK---KLDAWKEMMDRIKEGQVVTGTVSRK 142 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKE 691 + G V I G + SQ+ +R + DY +G+ V +VL++D R I +S + Sbjct: 143 IKGGLLVDIE-GVNVFLPASQVDIRRPADIGDY--IGRTVQCEVLKIDEARRNIVVSRRS 199 Query: 692 ATEQSQPAAAP 702 E+ + Sbjct: 200 LIERQREEDRE 210 >UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=Q5M0R3_STRT1 Length = 417 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ VK+ A D E + ++ + + ++ G V GKV R+ DFG FV Sbjct: 254 VSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGGFV 313 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G +GLVHISQI+ KRVE D L +GQ+V VKVLEV+ R+ LSIK E+ Sbjct: 314 EVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTVKVLEVNADAERVSLSIKALEERPAN 373 Query: 699 AAAPE 703 A Sbjct: 374 AEGEN 378 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAK-HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E I+ D + + E + AI +E+ +++EVG V TGKV R+ FGAF+ Sbjct: 169 QEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSFGAFI 228 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQP 698 +G G +GLVH+++++ +R + +G E+ VKVL +D + GR+ LS+K T Sbjct: 229 DLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWD 287 Query: 699 AAAPEAPAAEQGE 711 + A + E Sbjct: 288 GVEQKLAAGDVIE 300 Score = 42.9 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 A + +++ E V T K TR V G V G G + S I + V + Sbjct: 111 EARKAWDKLVGREE--EVVTVKGTRAVKGGLSVEFE-GLRGFIPASMIDTRFVRNTEQF- 166 Query: 667 QMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 +GQE K+ EVD + R LS +E E A E Sbjct: 167 -VGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKE 203 >UniRef50_UPI0001AF367B BCCT transporter n=2 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF367B Length = 215 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 55/88 (62%), Positives = 70/88 (79%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A+ A +R+ ITAE E+G++Y GKV RIVDFGAFV I GK+GLVHIS ++D RVEKVTD Sbjct: 120 AEAARQRVLGITAEAEIGKIYLGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTD 179 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 L+ G+EV V VL+VD +GRI+LSIK+ Sbjct: 180 ILKEGEEVEVLVLDVDNRGRIKLSIKDV 207 >UniRef50_C5ES10 RNA binding S1 domain-containing protein n=2 Tax=Clostridiales RepID=C5ES10_9FIRM Length = 258 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 10/220 (4%) Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED +++ L + EG + ++ I ++ + Sbjct: 26 MEDFAAELEASYQTLNKRHIELAEEESGEGAKWAQFAQMMEDKTVVKVKISEAVKGGVVT 85 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 ++ F P +K++D GK E T++ E + ++ + E Sbjct: 86 SLEEVRAFIPASQLSTEYVEKLEDWQGK-------YVECVIITVDPE-KKRLVLSGREVE 137 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + K + + A+ + G V G V I +GAF+ + G +GL+HISQI+ +R++ Sbjct: 138 RGKKEAEK-QARMAQFKAGDVVEGTVDSIKPYGAFIKLDEGVDGLLHISQISTQRIKHPG 196 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 L GQ V VK+L D G++ LS++ EQ+ A E Sbjct: 197 AVLTEGQTVKVKILSTD-NGKLSLSMRALAEQTADQEAHE 235 >UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4N7_NATTJ Length = 705 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 8/144 (5%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTG 627 + + + + +E ++ VK+ + D E + + E + + G + G Sbjct: 531 ISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDPFETFMKQYKSGDIVQG 590 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIR 686 KV R V+FGAF+ I G EGL HISQ++D V K D + G +V VK+L + D+Q ++ Sbjct: 591 KVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDDQQKKVS 650 Query: 687 LSIKEATEQSQPAAAPEAPAAEQG 710 LSIKEA +S+ E A Q Sbjct: 651 LSIKEAQGKSKKEQEQEEFAKYQD 674 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 11/193 (5%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVI 576 E ++ + + + + ++ + G + F P H ++ + D+ G + Sbjct: 404 EQLEQLMENDEEIKAQVTEEVKGGLVVDLGQLQGFIPASH---VDIHYVPDLSKYVGEEL 460 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 R IE++ + + + + + I G + G V R+ DFG Sbjct: 461 RL------KPIELDRSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFG 514 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQ 695 AF+ IG G +GL HISQI+ R++ L+ G+ V VKVL +D + RI LSIKEA Sbjct: 515 AFIDIG-GIDGLCHISQISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPD 573 Query: 696 SQPAAAPEAPAAE 708 + + + Sbjct: 574 PFETFMKQYKSGD 586 Score = 53.3 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 I+ + + E ++ + E ++ E+ +++ G+V GKV ++ + Sbjct: 279 TIKEVVGKMREFEEQNENLNTNSDESTQESQDELMKATEDSADKLDRGQVVKGKVVKVTE 338 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEAT 693 A + +G EG V ++++ K E + D L G E+ VKV++V D +G++ LS K A Sbjct: 339 DEAMIDVGYKFEGSVPVNEMPIKEGESLEDLLSEGDEIDVKVVKVDDEEGQLILSKKWAD 398 Query: 694 EQSQ 697 + Q Sbjct: 399 KDKQ 402 >UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacillales RepID=RS1H_BACSU Length = 382 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 619 + ++D G + L +E++ D I + + +E+ + Sbjct: 132 VEAHFVEDFTDYKGKTLSLLV------VELDRDKNRVILSHRAVVESEQANKKQELLQSL 185 Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 EVG V GKV R+ DFGAFV IG G +GLVHISQ++ VEK +D ++ GQEV VKVL V Sbjct: 186 EVGSVLDGKVQRLTDFGAFVDIG-GIDGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSV 244 Query: 680 DRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 DR RI LSIK+ + + E Sbjct: 245 DRDNERISLSIKDTLPGPWNQIGEKVKPGDVLE 277 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 10/140 (7%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRI 632 E+ +E + VK+ + D + + ++ +I +++ G V G V R+ Sbjct: 224 VEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRL 283 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKE 691 V FGAFV I G EGLVHISQI++K + + L+ GQ V VKVL+V+ + RI LS++E Sbjct: 284 VSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343 Query: 692 ATEQSQPAAA--PEAPAAEQ 709 E + + A E+ Sbjct: 344 LEETPKADQEDYRQYQAKEE 363 Score = 59.4 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAI-GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 EVG V G VT++ D V I + G++ IS+++ VEK +D +++ E+ +KV Sbjct: 13 PEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVKVDDELDLKVT 72 Query: 678 EVDRQGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 +V+ I LS + +++ + E E Sbjct: 73 KVEDDALI-LSKRAVDADRAWEDLEKKFETKEVFE 106 >UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN6_9GAMM Length = 283 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E++ ++ G+ G V + D+GAFV +G G +GL+HI+ +A KRV+ +D +Q+G E+ Sbjct: 107 EKLLENLQEGQELKGVVKNLTDYGAFVDLG-GIDGLLHITDMAWKRVKHPSDVVQIGDEI 165 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 VKVL+ D + R+ L +K+ + A A P + + Sbjct: 166 TVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPESTR 203 Score = 70.6 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++I D+ TVK+ D E+ + + + GKVT I D+G FV Sbjct: 159 VQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPESTRLFGKVTNIADYGCFV 218 Query: 640 AIGGGKEGLVHISQIADKRVEKVT 663 I G EGLVH+S++ + E + Sbjct: 219 EIEEGVEGLVHVSEMDLDQQEHPS 242 >UniRef50_B0KVD5 30S ribosomal protein S1 n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD5_9BACT Length = 414 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 8/138 (5%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G +R IEI+ + + + A ++ ++ +EI++G G VT I Sbjct: 176 GKTLRV------KVIEIDKEKNRFVLSEKDALATYSEESRKKRLSEIKIGSTVEGIVTGI 229 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 + FG FV + G EGLVHIS+IA ++V ++Y ++GQ++ V VL VD + ++ LS+K+ Sbjct: 230 MPFGVFVDLD-GVEGLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEESNKLALSVKK 288 Query: 692 ATEQSQPAAAPEAPAAEQ 709 + P + Sbjct: 289 LIPNPWETVEEKYPVGTK 306 Score = 84.8 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 16/130 (12%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ V + D E K A E + + VG TG V++IV FGAFV Sbjct: 262 FKVGQKIKVMVLGVDEESNKLALSVKKLIPNPWETVEEKYPVGTKVTGVVSKIVPFGAFV 321 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G +GL+HIS+ L+ G+ V V++VD + ++ LS +E ++ Sbjct: 322 TLEKGLDGLIHISE--------AEAPLKEGETVSAVVIQVDGENQKLALSTREHNFDNEK 373 Query: 699 AAAPEAPAAE 708 E + Sbjct: 374 DKVKEKSKDK 383 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + +G + G V + V IG EG++ ++++ +K +Q+G+++ K Sbjct: 25 MKQFRLGDMVEGVVVNVSHEEILVDIGAKSEGIITRLELSEA--DKSYKNIQVGEKITAK 82 Query: 676 VLEV-DRQGRIRLSIKEATEQSQPAAAPEA 704 V++ + QG + LS+K+A + + A EA Sbjct: 83 VVQTENAQGYVVLSLKKAEKDKKWQDAEEA 112 >UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_DEIGD Length = 587 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D V++ D + + E + +G+ GKVT + +FGAFV Sbjct: 291 VKVGDKVQVQVIDVDEGRERINLSMKSLTQDPWEGAVEKYHIGQRVRGKVTNLTNFGAFV 350 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGLVH+S+++ KRV + L+ G EV +L +D ++ RI L I++ T+ Sbjct: 351 ELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISLGIRQTTDDPW 410 Query: 698 PAAAPEAPAA 707 A P Sbjct: 411 SALPDRYPPG 420 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 11/194 (5%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVI 576 +++ Q + + +L + + A I F P +++ ++ D+ G + Sbjct: 152 RVLERMQEQDEAFEVEVLEKVRGGLVAQVEGIRAFLPA---SQVDTRRVNDLDPYVGKPL 208 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 IE+ I + + E+ ++ G + G+V I DFG Sbjct: 209 MV------KLIELNRKRNRVIISHRAILEAQKAKAREQTIGKLVPGAQFEGEVVEITDFG 262 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 695 FV +G G +GLVH S++ R D +++G +V V+V++VD + RI LS+K T+ Sbjct: 263 VFVNLG-GIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKSLTQD 321 Query: 696 SQPAAAPEAPAAEQ 709 A + ++ Sbjct: 322 PWEGAVEKYHIGQR 335 Score = 95.2 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 + G GK+T + DFG F+ I G EGL+HIS++ +RV D + G E Sbjct: 410 WSALPDRYPPGTPVKGKITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDE 469 Query: 672 VPVKVLEVDR-QGRIRLSIKEATEQSQPA 699 + +L +D + R LS + A P Sbjct: 470 IEAVILNIDPVEQRASLSRRRALGGGGPV 498 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV--EKVTDYLQMGQEVPVKVLEV 679 G + G V I G V +G EG++ ++QI D+ V E+ + G ++ V+ V Sbjct: 72 GDIVDGTVVFIGQEGIAVDVGAKVEGIIPLNQIGDEPVTLEQAQQMYKPGDQIEAYVVRV 131 Query: 680 D-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 D +I LS K A + ++ Sbjct: 132 DLANNQIVLSKKRADQDKGWRVLERMQEQDEA 163 >UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovibrio RepID=B8J034_DESDA Length = 489 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 9/137 (6%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G +RA +I D G V+IA + + + ++T +E G V GKV R+ Sbjct: 249 GDTVRAKV----LSISKSDKGQVRIALSRKQAEGDPWQ---DVTQRLENGAVVQGKVVRL 301 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 FGAFV I G EGLVHIS+++ KRV K + LQ+G V VK+ E++ RI LS++ Sbjct: 302 APFGAFVEILPGIEGLVHISELSWTKRVNKPEEILQVGDIVAVKIKEINADSRRISLSLR 361 Query: 691 EATEQSQPAAAPEAPAA 707 +A AA + Sbjct: 362 DAEGDPWQDAAQQFAPG 378 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 I +E+ G + + + ++E + ++ VG GK++R FGAF+ + E Sbjct: 167 IRVENRGRNIVVSRRALLDRERQEQLEALLEKLGVGDTVEGKISRFAPFGAFMELDTAVE 226 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG----RIRLSIKEATEQSQPAAAP 702 G++H+S+++ RV + + +G V KVL + + RI LS K+A Sbjct: 227 GMIHLSELSWSRVGAPDEAVSLGDTVRAKVLSISKSDKGQVRIALSRKQAEGDPWQDVTQ 286 Query: 703 E 703 Sbjct: 287 R 287 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 D + ++ D E ++ + G + G V +G F+ + G GL+ Sbjct: 352 DSRRISLSLRDAE-----GDPWQDAAQQFAPGSIVQGIVEGRSTYGLFITLAPGITGLLP 406 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 I + + L G V + V +D RI L Sbjct: 407 AGIIKNAKNAGQYSKLDKGDSVTLVVQNLDTAARRISL 444 >UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=A3ZTD7_9PLAN Length = 536 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 33/202 (16%) Query: 507 MDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK 566 +D ++G+ K ++ A+ QA+G F P +I P + Sbjct: 245 VDAVVDGVNKGGLECAVGQARG----------------------FIPA---SQIAPHHVT 279 Query: 567 DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYT 626 ++ G ++ L E E V A EKAK R+ E ++VG++ Sbjct: 280 NMEDYLGQKLQCLVTEA----NPERRNLVLSARAVAEKAKEDSRK--ETMVTLQVGQMRD 333 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRI 685 G VTR+ DFGAFV IG G +GLVH+SQI+ RV+ +D L GQ V VKV ++D + G+I Sbjct: 334 GTVTRLQDFGAFVDIG-GVDGLVHVSQISWDRVKHPSDALSEGQAVRVKVTKIDPETGKI 392 Query: 686 RLSIKEATEQSQPAAAPEAPAA 707 LSI++ E A E Sbjct: 393 GLSIRDTLENPWQKVAEEFSVG 414 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 13/145 (8%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE--DDGTVKIAATDGEKAKHAIRRI 612 +H +I+ D++K AL+E +++ D T KI + + ++ +++ Sbjct: 355 VHVSQISWDRVK-------HPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLENPWQKV 407 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E E VG + GKVT+I+DFGAFV I G EGLVH+S+++ RV ++ L+ G++V Sbjct: 408 AE---EFSVGAIINGKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKV 464 Query: 673 PVKVLEVDRQG-RIRLSIKEATEQS 696 VKV+ +D++ RI LSIK + Sbjct: 465 EVKVVNIDKEKRRIGLSIKALSPAP 489 >UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodothermaceae RepID=Q2S1M7_SALRD Length = 871 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 7/130 (5%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRR-----IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ E + V + ++ +++ ++I + + G V GKV I ++GAFV Sbjct: 407 VELDQELEVVVLDYEEERQRISLGLKQLRDHPWDQIGNKYDEGDVVEGKVVSITNYGAFV 466 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 I G EGLVHIS+++ R +E + + +GQ V VK+L +D + +I L +K+ Sbjct: 467 EIEKGIEGLVHISEMSWTRHIEHPSQMVSLGQVVDVKILNIDQEERKISLGMKQLEPDPW 526 Query: 698 PAAAPEAPAA 707 + PA Sbjct: 527 EGISDRYPAG 536 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 + +EI ++EVG+V G V IVDFG F+ +G G +GL+HI+ ++ RV ++ +++ Sbjct: 352 EQRQEILEQLEVGQVLEGTVKNIVDFGVFIDLG-GVDGLLHITDLSWGRVSHPSEVVELD 410 Query: 670 QEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 QE+ V VL+ + + RI L +K+ + + + E Sbjct: 411 QELEVVVLDYEEERQRISLGLKQLRDHPWDQIGNKYDEGDVVE 453 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 9/137 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 E + + VKI D E+ K + E I+ G V TG V I Sbjct: 487 IEHPSQMVSLGQVVDVKILNIDQEERKISLGMKQLEPDPWEGISDRYPAGTVLTGTVRNI 546 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 +FG FV I G +GLVH+S ++ K++ D + QE+ V +L +D + RI L K Sbjct: 547 TNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELDVVILNIDEERRRISLGHK 606 Query: 691 EATEQSQPAAAPEAPAA 707 + A Sbjct: 607 QVKTNPWDQFADAYEEG 623 Score = 51.7 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 584 GTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 G ++ E + V I D E+ + ++ E G TG+V R+ D G Sbjct: 578 GDMVDEEQELDVVILNIDEERRRISLGHKQVKTNPWDQFADAYEEGNDTTGEVVRVEDKG 637 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLS 688 V + E V S++ + + ++ G E+ ++V+ D+ + I LS Sbjct: 638 LVVQLPLDVEAFVPGSELKNGP-KAFKNHYHEGDELELQVIRFDKDQKDIVLS 689 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 590 EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 + DG + ++ +K + +R+EEI E V G + R + G V + G E + Sbjct: 248 DRDGQLVLSKEQADKVRR-WQRVEEI---YENEEVIEGTIIRRIKGGMIVELFDGMEAFL 303 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPE 703 SQI + V YL+ + K+++++ + I +S +E E E Sbjct: 304 PGSQIDVRPVRDFESYLET--RMEFKIVKLNPENENIVVSHRELIEHELEEQRQE 356 Score = 42.9 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 77/195 (39%), Gaps = 25/195 (12%) Query: 512 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINP-DKIKDVIG 570 G I++ A+ +A + + + D+SEF T+ + ++ ++ G Sbjct: 98 PGFVSRILEEAVEEASQ------DLPMPSGDEASVDVSEFDEPTETVSPDELERTEEAQG 151 Query: 571 KGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 630 G E G T+ +++ T + A D ++E + ++ + G+V Sbjct: 152 FTG-------ETYGETVSLDELETEEQAPADTSVYDQFRDVVDETSIDVREQDIVEGRVL 204 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV--DRQGRIRLS 688 R+ + + IG +G+V + + + G V V LE DR G++ LS Sbjct: 205 RVNEDYVVIDIGYKSDGIVSRDEFG-------EEEIHPGDTVEV-YLERKEDRDGQLVLS 256 Query: 689 IKEATEQSQPAAAPE 703 KE ++ + E Sbjct: 257 -KEQADKVRRWQRVE 270 >UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N749_9BACT Length = 607 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ ++ V I D EK + +++ ++ G GKV I+ +GAFV Sbjct: 276 LKVGEEIEVVIIGIDKEKERVSLGLKQKTRNPWDDVVSKYPKGSKINGKVVNIMPYGAFV 335 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 I G EGL+H+S+++ KRV K +D L +G+EV VL++DR +I L +++ Sbjct: 336 EIETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVEAVVLDIDRDSRKISLGLRQKERNPW 395 Query: 698 PAAAPEAPAAEQ 709 A + P + Sbjct: 396 EVLAEKYPVGRR 407 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 5/101 (4%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 I +VG V GKVT+I FGAFV + +GL+HISQ++ RVEKV D L +G E Sbjct: 482 WANINDLYKVGDVVKGKVTKIAAFGAFVELTNKIDGLIHISQLSRDRVEKVKDVLNVGDE 541 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQP----AAAPEAPAA 707 V +V++VD + RI LSIK E P AA E AA Sbjct: 542 VEARVIKVDTDERRIGLSIKAVGENFSPEDLKAAEEEYTAA 582 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 9/156 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 IH +++ K S + ++ EE + D + KI+ +K ++ E Sbjct: 345 IHVSEMSWTKRV----SKASDVLSIGEEVEAVVLDIDRDSRKISLGLRQKERNPW---EV 397 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVP 673 + + VGR TGKV + +GAFV I +G++H+S ++ R + + L+ GQEV Sbjct: 398 LAEKYPVGRRITGKVRNMTSYGAFVEIENDIDGMIHVSDMSWTRKINNPNEVLKPGQEVE 457 Query: 674 VKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 +L+++ Q RI L +K+A + Sbjct: 458 AIILDINPEQQRISLGLKQAETDPWANINDLYKVGD 493 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 8/148 (5%) Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEI---EDDGTVKIAATDGEKAKHAIRRIEEIT 616 ++ + ++ G I++ E + + EKA ++I+ IT Sbjct: 82 VDIGYKAEGFVPASEFLKFDEANIGDKIDVYLEEIENRNNMPEISLEKA-YSIKAWNRIT 140 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E G V G + V G V + G + SQ+ V + DY +G+E VK+ Sbjct: 141 TEYGEGHVVKGFMRHRVKGGIMVDVE-GFPAFLPGSQLDVGPVHNMDDY--IGKEFDVKI 197 Query: 677 LEVDRQGR-IRLSIKEATEQSQPAAAPE 703 ++++ R I +S +E E++ + Sbjct: 198 IKINLDRRNIVVSRRELLEETLKDQRSK 225 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 10/94 (10%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E T G++ GK+ GA V IG EG V S+ D +G ++ Sbjct: 57 ESTNAFTKGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKF------DEANIGDKID 110 Query: 674 VKVLEVDRQGR---IRLSIKEATEQSQPAAAPEA 704 V + E++ + I L K + ++ E Sbjct: 111 VYLEEIENRNNMPEISLE-KAYSIKAWNRITTEY 143 >UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H149_9FIRM Length = 703 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 91/194 (46%), Gaps = 11/194 (5%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRA 578 ++ ALN + ++ ++ ++ + A ++S F P + + + +G Sbjct: 402 LEDALNNDETVKVDVVRAVKSGVIANYKEVSGFIPLSQLSERFIEDASEFVG-------- 453 Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 I ++ I + + + +R++E+ ++ VG GKV R ++GAF Sbjct: 454 -QTMEAKVIRVDQKLGKAIFSPKQLQKEEKNKRLQELWKKLNVGDDIEGKVMRFTEYGAF 512 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 V IG G +GL+HIS+I+ +++ ++ L +G + VK+L ++ +G+I L K+ + Sbjct: 513 VDIG-GVDGLLHISEISWGKLKHPSEVLTVGDTINVKILSLNPEKGKISLGYKQNMPEPW 571 Query: 698 PAAAPEAPAAEQGE 711 + A + E Sbjct: 572 SIIDDKYKAGDNVE 585 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D VKI + + EK K + I + + G G + +I ++GAF+ Sbjct: 539 LTVGDTINVKILSLNPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVEGDIVQIKEYGAFL 598 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 + G +GL+HIS+I+ RVE + L +G V K+LE+D+ + RI LSIK + + Sbjct: 599 ELEPGLDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRRISLSIKALIDPPEQ 658 Score = 61.7 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 T G + + IE+ + G + G + I D V +G K+G++ S++A + Sbjct: 299 ETTGNEMLELMDEIEKSMKSPKTGEIVEGVIDAINDKEIVVNLGCKKDGIIPNSEVALEE 358 Query: 659 VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEA 704 + + D +G E+ KVL+ D G I LS ++ A +A Sbjct: 359 GQTIRDLFSVGDEIQAKVLKTDDGDGSILLSRRKMEASVHWAELEDA 405 >UniRef50_D1CBU2 RNA binding S1 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU2_THET1 Length = 431 Score = 122 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 561 NPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIE 620 + D+ ++ G ++A IE+ I + + E + E+ Sbjct: 205 DADRQSELANLVGRTLQA------KVIEVNRKRNRLILSERIATQERKETSKERLIEELR 258 Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 680 G++ G+VT + DFGAFV IG G +GL+H+S+I+ R+ ++ L+ G EV V VL +D Sbjct: 259 EGQIVKGRVTSLADFGAFVDIG-GADGLIHLSEISWGRINHPSEVLKPGDEVDVMVLNID 317 Query: 681 RQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 R+ +I LS+K + A + E Sbjct: 318 REHKKIALSMKRTQPEPWATAMERYDVGQIVE 349 Score = 88.3 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 15/116 (12%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D+ V + D E K A+ +VG++ G+VT+I FG FV Sbjct: 303 LKPGDEVDVMVLNIDREHKKIALSMKRTQPEPWATAMERYDVGQIVEGEVTQIAPFGVFV 362 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATE 694 + G EGLVH+S++ D +V Q+G ++ ++V+++D ++ RI LS+++ E Sbjct: 363 RLEDGIEGLVHMSELGDTKV-------QVGDKLRLRVIKMDTQRRRIGLSVRQLDE 411 >UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio RepID=C4XQS6_DESMR Length = 576 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ +K+ + D +K K ++ E I + +GKVT +VD+GAFV Sbjct: 251 VHLGDELELKVLSFDQDKQKVSLGMKQLIADPWENIAGKYPEDTRMSGKVTNLVDYGAFV 310 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGLVHIS+++ R + + + +G EV V VL VD + RI L +K+ Sbjct: 311 ELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPW 370 Query: 698 PAAAPEAPAAEQGE 711 A + P E Sbjct: 371 DIVAEKYPEGTILE 384 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + +++ +E G+ TG+V I ++G FV +G G +GL+HI+ ++ KR++ + Sbjct: 192 ERRDSMRKDLLKTLEEGQTVTGRVKNITEYGVFVDLG-GLDGLMHITDMSWKRIKHPKEL 250 Query: 666 LQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 + +G E+ +KVL D+ ++ L +K+ A + P + Sbjct: 251 VHLGDELELKVLSFDQDKQKVSLGMKQLIADPWENIAGKYPEDTR 295 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ V + + D +K + + + + + G + G V I +FG F+ Sbjct: 338 VHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITEFGIFI 397 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 I G +GL+H+S I+ K+V + + G V KVL VD++ + L IK+ +E Sbjct: 398 GIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQLSEDPW 457 Query: 698 PAAAPEAPAA 707 P Sbjct: 458 TRVPDTYPVG 467 Score = 99.5 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 8/115 (6%) Query: 584 GTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 G + D K+ D E K + + VG + G VT I DFG Sbjct: 422 GEMFKSGDIVMAKVLTVDKENEKFTLGIKQLSEDPWTRVPDTYPVGAMVKGTVTNITDFG 481 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 FV + G EGLVH+S+I+ K+V+ + + G E+ KV+ V + R+ LSIK Sbjct: 482 LFVEVEEGIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKVIHVSADERRLGLSIK 536 Score = 44.0 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 19/151 (12%) Query: 559 KINPDKIKDVIGKGGSVIRALTEETGTTIEI-----EDDGTVKIAATDGEKAKHAIRRIE 613 +I + D +G L + G I++ + I + + K ++E Sbjct: 63 QIPVSEFMDALG-------ELEVKVGDQIDVYVVSKNESEGTIIMSRERAKRMQLFDKLE 115 Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 EI E V +GK+ R + G V +G G E + S + + V + +GQE Sbjct: 116 EIQ---EKDDVISGKIVRRIKGGYTVDLG-GVEAFLPGSHVDLRPVPDMDAL--VGQEFE 169 Query: 674 VKVLEVDRQG-RIRLSIKEATEQSQPAAAPE 703 +VL+++R+ + +S + E+ + + + Sbjct: 170 FRVLKINRRRSNVIVSRRVLLEERRDSMRKD 200 >UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=candidate division TM7 RepID=UPI00016B22D3 Length = 358 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 9/143 (6%) Query: 573 GSVIRALTEETGTTIEIE----DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 +++ L G T+++ D + K+ ++ E K + E ++ VG G Sbjct: 151 DEILQRLNNLIGKTMKVRILDADRKSNKLIFSEKEAVKDG---LAERFEKLAVGDQVEGV 207 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS 688 VT +VDFG FV + G EGLVHIS+I+ +RV +DY++ GQ + K++ +D+ R+ LS Sbjct: 208 VTGVVDFGVFVNVE-GIEGLVHISEISWERVNNPSDYVKTGQTIKAKIIAIDKD-RLSLS 265 Query: 689 IKEATEQSQPAAAPEAPAAEQGE 711 +K+ T+ ++ E Sbjct: 266 MKQLTQDPWLTEVQNFSKGDKVE 288 Score = 86.8 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAI 641 ++ KI A D ++ +++++ + G G VTRI FGAFV + Sbjct: 244 VKTGQTIKAKIIAIDKDRLSLSMKQLTQDPWLTEVQNFSKGDKVEGTVTRITPFGAFVQV 303 Query: 642 GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQ 695 E LVHIS++ D + + +L++D++ R I LS+ E+ ++ Sbjct: 304 SPAIEALVHISELGDSNNVDPEKVFTLNERKEFVILDIDKENRKISLSLGESNKK 358 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 22/151 (14%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF- 635 R ++E + + D + + R EE++A +E +G+V I + Sbjct: 61 RNISEGDEVSASVVDTELENGMSLLSLRKAVKDRGWEEVSARLE-----SGEVIDIQPYD 115 Query: 636 ----GAFVAIGGGKEGLVHISQIADKRVEKV-----TDYLQ-----MGQEVPVKVLEVDR 681 G V G G + +SQ++ + +V + LQ +G+ + V++L+ DR Sbjct: 116 ANRGGLLVE-YEGVRGFLPVSQLSAEHYPRVGSSDKDEILQRLNNLIGKTMKVRILDADR 174 Query: 682 Q-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + ++ S KEA + + +Q E Sbjct: 175 KSNKLIFSEKEAVKDGLAERFEKLAVGDQVE 205 Score = 42.9 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 ++ G V TGKV + + +G G V ++ R + G EV Sbjct: 19 AKQLVAGEVVTGKVLSLKKHEVLIDLGAQGVGFVPRREVGFSR------NISEGDEVSAS 72 Query: 676 VLEVDRQGRIR-LSI-KEATEQSQPAAAPEAPAAE 708 V++ + + + LS+ K ++ + + E Sbjct: 73 VVDTELENGMSLLSLRKAVKDRGWEEVSARLESGE 107 >UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridiales RepID=B1I3Y7_DESAP Length = 677 Score = 122 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 11/161 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P + + + +G R ++ IE+ I + + Sbjct: 429 VRSFLPASQVERGYVEDLSQYVG------REISARI---IELNKARKKVILSRKVLLEEE 479 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 R+ +E + G V G V R+ FGAFV IG G +GL+HIS+I+ R+ ++ L+ Sbjct: 480 YSRKRKETLETTQEGDVVKGVVRRLTQFGAFVDIG-GLDGLLHISEISWHRINHPSEVLK 538 Query: 668 MGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAA 707 +G E+ V+VL +DR+ ++ LS+K+ P Sbjct: 539 VGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVVENYPVG 579 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 8/117 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ V++ D E K + E++ VG V + +V R+V FGAFV Sbjct: 537 LKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVVENYPVGSVVSARVVRLVPFGAFV 596 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQ 695 + G EGLVHIS +AD V K D + GQ++ VKVL V D RIRLS++E + Sbjct: 597 ELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVDDENKRIRLSLREVVKD 653 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + G + G + ++ V +G EG+V + +++ V + +Q+G E+ V Sbjct: 315 VRSLRSGDIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVW 374 Query: 676 VLEV-DRQGRIRLS 688 V++ D +GRI LS Sbjct: 375 VVKAEDNEGRIILS 388 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 15/129 (11%) Query: 582 ETGTTIEI------EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 + G I++ +++G + ++ + K + + G G V +V Sbjct: 366 QVGDEIDVWVVKAEDNEGRIILSKGRADAVKA----WDTLDKAFHGGETVRGVVREVVKG 421 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 694 G V + G + SQ+ VE ++ Y +G+E+ +++E+++ + ++ LS K E Sbjct: 422 GLLVDL--GVRSFLPASQVERGYVEDLSQY--VGREISARIIELNKARKKVILSRKVLLE 477 Query: 695 QSQPAAAPE 703 + E Sbjct: 478 EEYSRKRKE 486 >UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7 Tax=Clostridiales RepID=A3DDC0_CLOTH Length = 694 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 8/133 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAI--RRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ V + D EK K ++ R++E+ I + +VG V V R FGAFV Sbjct: 527 LKVGDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFV 586 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 + G +GLVHISQI+ KR+ KV D L++G +V K++EVD +I LSIKE P Sbjct: 587 ELEKGVDGLVHISQISSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEVMPIDPP 646 Query: 699 AAAPEAPAAEQGE 711 ++ E+ A + E Sbjct: 647 SSKSESKAKDGSE 659 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 32/166 (19%) Query: 546 GDISEFAPRIHTIKIN--PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 D++EF R T++I +K + V+G R + EE E Sbjct: 434 KDLNEFLKRSITVRILELNEKRRKVVGSA----RVIIEE--------------------E 469 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K A R +EVG+V+ G V + DFGAFV IG G +GL+HIS+++ RV+ + Sbjct: 470 KEALANRTW----NSMEVGKVFKGTVKSLTDFGAFVDIG-GVDGLIHISELSWTRVKHPS 524 Query: 664 DYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 + L++G EV V VLE D++ ++ L ++ + + + Sbjct: 525 EVLKVGDEVEVTVLEFDKEKKKVSLGYRKMEDNPWYKIEEKYKVGD 570 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 5/137 (3%) Query: 560 INPDKIKDV-IGKGGSVIRALTEETGTTI-EIEDDGTVKIAATDGEKAKHAIRRIEEITA 617 ++ KIK V I G S + EE + E+ G V I DGE E Sbjct: 248 VDIKKIKKVGISAGASTPDWVIEEVIKKMSELNKQGMVDILENDGEI--DFANAFENSFV 305 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 I G GK+ FV +G +G++ + + D + +++G+EV V V Sbjct: 306 RIHAGDTVKGKIIGFNSNEVFVDLGYKADGIIPLEEYTDDPNFNIEKEVKIGEEVEVLVE 365 Query: 678 EV-DRQGRIRLSIKEAT 693 V D +G +RLS ++ Sbjct: 366 MVNDGEGNVRLSKRKVD 382 >UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2 Tax=Desulfitobacterium hafniense RepID=B8G2Q3_DESHD Length = 661 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P +I P ++D+ G +R IE + + + + Sbjct: 406 MRGFVPA---SQIQPGYVEDLNQFKGQTLRLRV------IEFDPAKRRVVLSQKEILQEE 456 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 + E + A ++ G V +G V R+ FGAFV IG G +GL+H+S IA R++ ++Y+ Sbjct: 457 QAAKKEHLLATLQEGDVVSGVVKRLAQFGAFVDIG-GVDGLLHVSDIAYTRIKHPSEYVN 515 Query: 668 MGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 +G EV V++L+VD++ G+I L +K+ +A + Sbjct: 516 VGDEVEVQILKVDKEQGKISLGLKQLKPSPWESAPEKY 553 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 15/140 (10%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ V+I D E+ K E + +G + TGKV RI FGAFV Sbjct: 514 VNVGDEVEVQILKVDKEQGKISLGLKQLKPSPWESAPEKYALGSLVTGKVVRIAPFGAFV 573 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQSQP 698 + G + L+HISQ+++KRV KV D +++G V KV+E + RI LSI+EA ++Q Sbjct: 574 QLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRISLSIREAAAEAQA 633 Query: 699 -------AAAPEAPAAEQGE 711 A+ PEAP G+ Sbjct: 634 TEDAELLASQPEAPQVTIGD 653 Score = 55.6 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 + +E++ + + A+ +++E+ E GKV +V G V + G Sbjct: 351 VVLRVENEEGNPVLSKRRADEMAAVDKLKELAESKEE---IQGKVADVVKGGLIVDV--G 405 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAP 702 G V SQI VE + + GQ + ++V+E D + R+ LS KE ++ Q A Sbjct: 406 MRGFVPASQIQPGYVEDLNQF--KGQTLRLRVIEFDPAKRRVVLSQKEILQEEQAAKKE 462 Score = 47.1 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 + EE + ++ + E + G + TG V +I F Sbjct: 263 IIEEVYRKMSTMENKETHEM--------MNMEDWAEGMQNLHRGALVTGTVVKINHDEVF 314 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQSQ 697 V +G EG++ + ++ + +D + +G ++ VL V + +G LS + A E + Sbjct: 315 VDLGWKSEGVIALKELTVASDLQTSDIVAIGDQISAVVLRVENEEGNPVLSKRRADEMAA 374 Query: 698 PAAAPEAPAAEQ 709 E +++ Sbjct: 375 VDKLKELAESKE 386 >UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphilus RepID=A6TRF8_ALKMQ Length = 383 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 14/174 (8%) Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 I RG I F P D +K +GK + D K Sbjct: 124 VIAIARG-IRCFIPASQLSDRYVDDLKTFVGK----------SFNAKVIEIDRQKNKAVL 172 Query: 600 TDGEKAKHA-IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 + E + + ++ A++E G G+V R+ +FGAFV IG G +GLVHIS+++ R Sbjct: 173 SRKEVLQQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDIG-GIDGLVHISELSWGR 231 Query: 659 VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V+ ++ + + +V VKV++ D G++ LSIK+ + A + A + E Sbjct: 232 VKNPSEVVSVEDQVEVKVIDFDETTGKVSLSIKQTQPEPWTLIADKFKAGDILE 285 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 8/126 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + +ED VK+ D K + I + + G + GKV R+VDFGAFV Sbjct: 239 VSVEDQVEVKVIDFDETTGKVSLSIKQTQPEPWTLIADKFKAGDILEGKVVRLVDFGAFV 298 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G +GLVHISQI++ + K ++ L +GQ V VKVL+++ G RI LS+ A E S Sbjct: 299 ELMPGLDGLVHISQISEAHIAKPSEELHVGQNVNVKVLDINIDGKRISLSMTAAQEDSTE 358 Query: 699 AAAPEA 704 E Sbjct: 359 NEPTEY 364 Score = 59.4 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + IE+ + G V TGKV ++ D G V IG +G+V +I++ D Sbjct: 5 MEELMEEIEKSLIRPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEISNDPTITPQD 64 Query: 665 YLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 + E+ V +++ D +G + LS K Sbjct: 65 VAKADDEISVYIIKTDDGEGNVLLSTKRVE 94 >UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=RS1_LEULA Length = 429 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 8/120 (6%) Query: 590 EDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 D VKI A D EK + ++ +E +I G V G V R+ DFGAFV I Sbjct: 277 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEIL 336 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAA 701 G EGLVH+SQI++KR+E ++ L+ G +V VKVL++ + RI LS+K E+ + Sbjct: 337 PGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKPEREDR 396 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 2/98 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +++ VG V G V R+ DFGAFV +G G +GLVH+S+I+ RV+ D L G +V V Sbjct: 224 VFSKLSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHVSEISHDRVKNPADVLTKGDKVDV 282 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 K+L +D +GRI LSIK AA + A E Sbjct: 283 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLE 320 Score = 48.2 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 + + + + + +G + + A+ A + G KV V Sbjct: 101 KIGDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENL-----SFAEGDTVDAKVINAV 155 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEA 692 G V + G G V S +A++ V + + +++ +V+E+D R+ LS K Sbjct: 156 RGGLIVDV-NGVRGFVPASMVAERFVSDLNQF--KNKDIKAQVIEIDPANARLILSRKAV 212 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGGKEGLVHISQIADKRVEK 661 E + +E +I+VG V TG++ I D A V + G+EG+V + +D R Sbjct: 36 ETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRNIN 95 Query: 662 VTDYLQMGQEVPVKVLE 678 + D L++G + V+ Sbjct: 96 LADELKIGDTIEAVVIS 112 >UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDV0_9FIRM Length = 678 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IE+ + I + + A + +++ AE+E G++ G V R+ +FGAFV +G G + Sbjct: 446 IEMRPEKEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVG-GID 504 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLE-VDRQGRIRLSIKEATEQSQPAAAPEAP 705 GLVHIS+I+ R++ + L +G E+ VKV+E + + RI LS+++A + Sbjct: 505 GLVHISEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFS 564 Query: 706 AAEQGE 711 A + E Sbjct: 565 AGDVVE 570 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 8/129 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRI 632 + G + + D+ VK+ E+ + E+ + G V GKVTRI Sbjct: 517 IDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFSAGDVVEGKVTRI 576 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKE 691 VDFGAFV + G EGLVHISQ+A+ V++ ++ +Q G V VK+L+++ G R+ LS+++ Sbjct: 577 VDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDGKRVSLSMRD 636 Query: 692 ATEQSQPAA 700 A + + Sbjct: 637 AAPRPKKEQ 645 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 565 IKDVIGKGGSVIRALTE---ETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 621 ++VI +G ++ + E E ++ DD +I + + ++ E+ E Sbjct: 335 RQEVILEGDQMLADVMENGQEVEVAVKKVDDQEGRIILSRKAIERK--QKWAELEKAFEE 392 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G + +GKV V G V +GGG + + S + + + ++ GQE+ K++E+ Sbjct: 393 GTILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEF--QGQEISFKIIEMRP 450 Query: 682 QG-RIRLSIKEATEQSQPAAAPE 703 + ++ LS K+ E+ + Sbjct: 451 EKEKLILSRKQVLEEEAAVQKDK 473 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 E+ +++ E G V TG V ++ D V IG EG++ ++ + + Sbjct: 286 EEQTATEEVSLDQEIKEFSAGDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQM 345 Query: 662 VTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQSQPAAAPEA 704 + D ++ GQEV V V +V D++GRI LS K + + A +A Sbjct: 346 LADVMENGQEVEVAVKKVDDQEGRIILSRKAIERKQKWAELEKA 389 >UniRef50_A4IQA6 30S ribosomal protein S1 n=10 Tax=Bacillaceae RepID=A4IQA6_GEOTN Length = 387 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 8/128 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D VK+ A D E+ + ++ E I+ +++ V TG V R+ FGAFV Sbjct: 236 VKEGDAVKVKVLAVDPEQGRLSLSIKEALPGPWEGISEKVKPSDVVTGTVKRLASFGAFV 295 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 I G EGLVH+SQIA++R+ + L+ G EV KVL+V+ + RI LSI+ E+ Sbjct: 296 EIFPGVEGLVHVSQIANRRIGSPHEVLKEGDEVKAKVLDVNEAEHRISLSIRALLEEETA 355 Query: 699 AAAPEAPA 706 A A + Sbjct: 356 APAEDYSQ 363 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 619 + P ++D G + T +E++ + I + + R+ +E+ + + Sbjct: 137 VEPHYVEDFSDYKGKTL------TVKVVELDREKNRVILSHRAVVEEEQERQQKELLSRL 190 Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 E G+V G V RI DFG FV +G G +GLVHISQ++ RV ++ ++ G V VKVL V Sbjct: 191 EAGQVLDGVVRRIADFGVFVDVG-GFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAV 249 Query: 680 D-RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 D QGR+ LSIKEA + + ++ Sbjct: 250 DPEQGRLSLSIKEALPGPWEGISEKVKPSD 279 Score = 63.7 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%) Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKE-GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 V + GKV ++ D V + K+ G++ IS++++ +EK +D + +G EV KV +V Sbjct: 14 VDDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAVGDEVTAKVKKV 73 Query: 680 D-----RQGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 + +G + LS K E++ + + E E Sbjct: 74 EEGKDGEEGLLILSKKAVDAERAWEELERKFASGETFE 111 >UniRef50_D2R2F1 RNA binding S1 domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2F1_9PLAN Length = 502 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 13/158 (8%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE--DDGTVKIAATDGEKAKHAIRRI 612 IH +++ D+IK LTE + IE D T KI + + +H I Sbjct: 320 IHISQMSWDRIK-------HPSEILTEGQKVRVRIEKIDPETGKIGLSLRNQQEHPWTGI 372 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 ++ + VG + G V+R+ FGAFV + G EGL+HIS++A RV V + ++ GQEV Sbjct: 373 DQ---KFPVGSIVKGTVSRLAAFGAFVKLSPGVEGLIHISELAHNRVYAVQNVVKEGQEV 429 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 VK+L V RI LS+K + + +A AA + Sbjct: 430 EVKILTVSAEDQRISLSLKATLQAPAKSEKTKAEAAPE 467 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + +E+ A I +G + G V +I DFGAFV +G G +GL+HISQ++ R++ ++ Sbjct: 278 REKESAKKELMASIAIGDMREGVVRKIQDFGAFVDMG-GIDGLIHISQMSWDRIKHPSEI 336 Query: 666 LQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAA 707 L GQ+V V++ ++D + G+I LS++ E + P Sbjct: 337 LTEGQKVRVRIEKIDPETGKIGLSLRNQQEHPWTGIDQKFPVG 379 Score = 48.6 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 ++I G + K+ G I GG G + SQ RVE + D +GQ + Sbjct: 200 WSDIREGGLVDAKIVAANTGGLECEIAGGVRGFIPASQAGLYRVENLGDL--VGQRITCV 257 Query: 676 VLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 + E + +G + LS + E+ + +A E Sbjct: 258 ITEANERRGNVVLSRRAVLEREKESAKKE 286 >UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF0_9DELT Length = 476 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IE +D G V+I + + E IT E G V G VTR+ FGAFV I G E Sbjct: 254 IEEKDKGQVRIGLSMKQAQADPW---ESITENFEPGSVVEGVVTRVAPFGAFVEISPGLE 310 Query: 647 GLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEA 704 GLVH+S+++ KRV K + +Q GQ+V VKV +D + RI LS+++A + Sbjct: 311 GLVHVSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMRDAQGDPWEGVSTRY 370 Query: 705 PAA 707 Sbjct: 371 EKG 373 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 +E +G + + K K + E + + G V G VTR+ +G FV + G EG Sbjct: 163 RVEANGRNIVVSRRALKDKEQAESLHEFSRNYKPGDVLQGTVTRVEPYGVFVEVAPGLEG 222 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG----RIRLSIKEATEQSQPAAAPE 703 LVHIS+++ R + + +G V V +L ++ + RI LS+K+A + Sbjct: 223 LVHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKDKGQVRIGLSMKQAQADPWESITEN 282 Query: 704 APAAEQGE 711 E Sbjct: 283 FEPGSVVE 290 Score = 57.1 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAF 638 ++ VK+ D + + ++ E ++ E G + GK+ + DFG Sbjct: 330 EVQPGQKVRVKVKGIDSLERRISLSMRDAQGDPWEGVSTRYEKGTLVEGKMEKQEDFGML 389 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 VA+ G GLV S + + +T+ + G V V V VD R R+S++ A Sbjct: 390 VALEPGVVGLVPRSILHQNQDSSLTNK-KPGDRVNVAVESVDEANR-RISLQPADSVQSE 447 Query: 699 AAAPEAPAAEQG 710 APA + G Sbjct: 448 EWQSYAPARDNG 459 >UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL Length = 392 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 4/114 (3%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 I+ + + + E+A R E IE+G V G V R+ DFGAFV +G Sbjct: 152 AEIDQDSNKLILSCRAVHEEAAQHQR--EATFNNIEIGSVVDGIVRRLTDFGAFVDVGA- 208 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 +GLVHISQI+ +RV +D L +G EV KVL+ DR+ GRI LSI++ Sbjct: 209 VDGLVHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQPGPW 262 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D+ K+ D E + ++ + ++ + G V R+V FGAFV Sbjct: 230 LNIGDEVKCKVLKFDRESGRISLSIRDTQPGPWSGVEDQLVENDIVKGVVKRLVSFGAFV 289 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQP 698 I G EGL+HIS+I+ + + ++ L+ GQE+ VK+L VD R+ L++ + + + Sbjct: 290 EILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDSNARRVSLTMCDVEQNTSQ 349 Query: 699 AAA 701 + Sbjct: 350 KSE 352 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 E+G + TG VT+I A + I E ++ IS+++ R+ +V D L++ E+ ++VL Sbjct: 11 FEIGSLVTGSVTKIDKNQALIKIAEDIEAILPISELSCLRINEVGDMLKLDDELELEVLR 70 Query: 679 VD-RQGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 +D + + LS + +++ P + E E Sbjct: 71 LDEEENKFILSKRAVDAKKAWPFLQHKYENNENIE 105 Score = 46.3 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAK--------HAIRRIEEITAEIEVGRVYTGKVTR 631 E G ++++D+ +++ D E+ K A + + + E KV+ Sbjct: 51 INEVGDMLKLDDELELEVLRLDEEENKFILSKRAVDAKKAWPFLQHKYENNENIEAKVSD 110 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 +V G + + G G V S + VE +DY + + +K+ E+D+ ++ LS + Sbjct: 111 VVKGGLVIDL--GVRGFVPASLVECHYVEDFSDY--KDRVITMKIAEIDQDSNKLILSCR 166 Query: 691 EATEQS 696 E++ Sbjct: 167 AVHEEA 172 >UniRef50_Q03SZ4 RNA binding protein (S1 domain) n=105 Tax=Firmicutes RepID=Q03SZ4_LACBA Length = 181 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 42/78 (53%), Positives = 54/78 (69%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG TGKV+ I +FGAFV +G K GLVHIS+I+D V+ + D L +G EV VKVL Sbjct: 3 IEVGAKVTGKVSGITNFGAFVDLGDHKTGLVHISEISDGYVKDIHDVLSVGDEVTVKVLT 62 Query: 679 VDRQGRIRLSIKEATEQS 696 V G+I LSI++AT+ Sbjct: 63 VGDDGKIGLSIRKATDHP 80 >UniRef50_D1VSI0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSI0_9FIRM Length = 725 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 I+ + + + + + +I + +G V G V R+ +FGAFV IG G + Sbjct: 430 IDFDKRKRRIVLSRKNVLMRELEEKRSQIFESLHIGDVIEGTVQRLTNFGAFVDIG-GID 488 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 GLVHIS+++ RV+ ++ + G +V V+VL +D + RI L +K+ TE+ Sbjct: 489 GLVHISELSWNRVKHPSEVVSAGDKVKVQVLSLDEEKDRIALGLKQTTEKPW 540 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 11/134 (8%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + D V++ + D EK + A + ++ ++VG V GKV I+DFGAFV Sbjct: 508 VSAGDKVKVQVLSLDEEKDRIALGLKQTTEKPWDKFINAVKVGDVVKGKVVNILDFGAFV 567 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT---EQ 695 + G +GL+H+SQI + +EK D L++GQEV VKV+E+D++ +I LSIK E Sbjct: 568 RLEEGVDGLLHVSQICREHIEKPQDRLEIGQEVEVKVIEIDQENKKISLSIKALLEPIED 627 Query: 696 SQPAAAPEAPAAEQ 709 + E P ++ Sbjct: 628 DENKEKTEKPKVKK 641 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 592 DGTVKIAATDGEKAKH--AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 D +K A + E + I+ I+ G + TG+V + D V +G +G++ Sbjct: 259 DKVIKEAVSSMENFDKGEMMEAIDNSFKRIKKGEIVTGEVLYVTDNEVMVNLGYRSDGII 318 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE-QSQPAAAPEA 704 +++ K +D + G E+ V VL++D G + LS + + + Sbjct: 319 SKEELSKNTDAKPSDLYKQGDEIEVFVLKMDDGDGNVVLSARRVEDMKVWDEIEESY 375 Score = 45.2 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 592 DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 DG V ++A E K +EI + T KV V G ++ G + Sbjct: 352 DGNVVLSARRVEDMKV----WDEIEESYNNHEIVTAKVINQVKGGLTASLD-GISAFIPA 406 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT 693 S + K ++ + +G + ++++ D++ RI LS K Sbjct: 407 SHVTVKFQRDLSKF--VGDDFQCEIIDFDKRKRRIVLSRKNVL 447 >UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Verrucomicrobia group RepID=RS1_CHLPN Length = 580 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E+ + V I + D EK + A E+I + G+ GK+ +++ +GAF+ Sbjct: 263 VELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFI 322 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 I G EGL+HIS+++ K + ++ + G EV VL + + +G+I L +K+ Sbjct: 323 EIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPW 382 Query: 698 PAAAPEAPAA 707 + P Sbjct: 383 DNIEEKYPIG 392 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 558 IKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA 617 +I+ KIK++ G V E I +E V E + I + E+ Sbjct: 162 SQIDNKKIKNLDDYVGKV----CEFKILKINVERRNIVVSRRELLEAER--ISKKAELIE 215 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 +I +G G V I DFG F+ + G +GL+HI+ + KR+ ++ +++ QE+ V +L Sbjct: 216 QISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274 Query: 678 EVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQ 709 VD++ GR+ L +K+ + P ++ Sbjct: 275 SVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKR 307 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 7/119 (5%) Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 D+G + + E+ + I + +G ++ + ++GAFV + G EGL+H Sbjct: 366 DEGKISLGLKQTER-----NPWDNIEEKYPIGLHVNAEIKNLTNYGAFVELEPGIEGLIH 420 Query: 651 ISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAA 707 IS ++ K+V ++ + G V +L VD++ +I L +K+ + PA Sbjct: 421 ISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFPAG 479 Score = 97.2 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%) Query: 597 IAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 I + D E K + EI A G V +G VT+I FGAFV + G EGL+ Sbjct: 447 ILSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLI 506 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 H+S+++DK K+ D + +G+ V KV+++D ++ LS+KE Sbjct: 507 HVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKE 549 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 7/126 (5%) Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 L E ++ +D K+ + + + R+ E I A E G + G++TR V G Sbjct: 93 LGAEVEVYLDQAEDEEGKVVLSREKATR--QRQWEYILAHCEEGSIVKGQITRKVKGGLI 150 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQ 697 V I G E + SQI +K+++ + DY +G+ K+L+++ + R I +S +E E + Sbjct: 151 VDI--GMEAFLPGSQIDNKKIKNLDDY--VGKVCEFKILKINVERRNIVVSRRELLEAER 206 Query: 698 PAAAPE 703 + E Sbjct: 207 ISKKAE 212 Score = 42.9 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%) Query: 613 EEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 EE EI+ G + G V I DF V +G EG++ +S+ D ++ L +G E Sbjct: 43 EESDNEIQPGAILKGTVVDINKDF-VVVDVGLKSEGVIPMSEFIDS-----SEGLVLGAE 96 Query: 672 VPVKVLEV--DRQGRIRLSI-KEATEQSQP 698 V V L+ D +G++ LS K ++ Sbjct: 97 VEV-YLDQAEDEEGKVVLSREKATRQRQWE 125 >UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WX93_ALIAD Length = 385 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P ++ ++++ G +RA IE++ I + + Sbjct: 125 VRAFIPASL---VDRHFVENLEQFKGQKLRA------KVIEVDPQKNKLILSRRAVLEEE 175 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 + R ++ E++ G V G V R+ DFGAFV +G G +GLVHIS+++ V ++ ++ Sbjct: 176 SEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVG-GADGLVHISELSFSHVNHPSEVVR 234 Query: 668 MGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 G V V+VL VD + GRI LSIK A + A E + Sbjct: 235 EGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGD 276 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 8/116 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + D V++ D E + + E E + G V G V R+VDFGAFV Sbjct: 233 VREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGVVRRVVDFGAFV 292 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATE 694 + G EGLVH+SQI+++ V+K +D LQ GQEV V+VL VD + RI LS++++++ Sbjct: 293 ELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISLSMRDSSQ 348 Score = 61.7 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS--QIADKRVEKVTDYLQMGQEVPV 674 A + G V TG+VT + D G VA+ G EG HIS +++ +D + +G V Sbjct: 12 AAVREGDVVTGEVTAVDDHGVTVALPHGYEG--HISPQELSAVPGTHPSDVVSVGSTVTA 69 Query: 675 KVLEVD-RQGRIRLSIKEATEQS 696 +VL+VD G + LS + A + S Sbjct: 70 QVLKVDMESGHVTLSKRRAEQAS 92 >UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4 Tax=Veillonellaceae RepID=A1HTW2_9FIRM Length = 655 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IEI+ + + + RR EE+ + + G++ TG V+RI DFG FV +G G + Sbjct: 428 IEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLG-GVD 486 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 GL+HIS ++ RV+ T+ + +G EV V V +VD + RI LS+K Sbjct: 487 GLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPW 538 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 8/126 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D+ V + D + + ++ ++ + G GKVT++ FGAFV Sbjct: 506 VNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPWYDVVEGLREGMTVAGKVTKLAKFGAFV 565 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G EGLVH+S++AD+RV + +++GQ V VK+L +D++ RI LSI +A + ++ Sbjct: 566 EVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKENKRISLSIAQAQQDAER 625 Query: 699 AAAPEA 704 A Sbjct: 626 ADYQRF 631 Score = 59.4 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 23/193 (11%) Query: 531 LHILGVMEQAINAPRGDISEFAP----RIHTIKINPDKIKDVIGKGGSVIRALTE----- 581 + M++ D+ P + + + D++ IG G + LTE Sbjct: 266 EEVYSKMQEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYPV 325 Query: 582 --ETGTTIEIEDDGTVKIAATDGEKAKHAIRR--------IEEITAEIEVGRVYTGKVTR 631 + D+ V + A +G+ + + E++ A + TGKVT Sbjct: 326 PENASDVVSEGDEIDVYVLAPEGDDGPVKLSKVKADNIVAWEKLQAAAQANETVTGKVTA 385 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 +V G V++ G G V SQ+A + V +T Y +GQ + + +E+D+ +I LS + Sbjct: 386 VVKGGLAVSLY-GVRGFVPASQVAVQHVADLTPY--VGQTLELLPIEIDQAKQKIVLSRR 442 Query: 691 EATEQSQPAAAPE 703 + EQ Q A E Sbjct: 443 KVLEQEQQRRAEE 455 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K + + +++ +E G + G+V + FV IG EG++ ++++A E + Sbjct: 271 KMQEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYPVPENAS 330 Query: 664 DYLQMGQEVPVKVLEVD-RQGRIRLS-IKEATEQSQPAAAPEAPAAE 708 D + G E+ V VL + G ++LS +K + A A E Sbjct: 331 DVVSEGDEIDVYVLAPEGDDGPVKLSKVKADNIVAWEKLQAAAQANE 377 >UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3232B Length = 529 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I ++ G + G ++ IVDFGAFV + G +GL+HIS+++ V ++ L +G V V Sbjct: 207 ILDRLQPGMIVEGTISNIVDFGAFVDLD-GIDGLIHISELSWSHVNHPSEILSIGDTVSV 265 Query: 675 KVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KVL++DR RI L +K+ E ++ E Sbjct: 266 KVLDIDRDRQRISLGLKQTQEDPWQRVVDTYNVGDELE 303 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 8/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D +VK+ D ++ + + + + VG G+VT++V FGAFV Sbjct: 257 LSIGDTVSVKVLDIDRDRQRISLGLKQTQEDPWQRVVDTYNVGDELEGRVTKVVTFGAFV 316 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 I G EGLVHIS++A VE + +Q EV VK+LE+D + R+ LSIK Q P Sbjct: 317 EILDGVEGLVHISELAQHHVENPREIIQPNDEVKVKILEIDSERRRLSLSIKRVEGQILP 376 Query: 699 AAAPEAPAAEQG 710 + E +G Sbjct: 377 VRSLEGEDGAEG 388 Score = 57.9 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 E G V TG V RI V IG EG++ ++++ ++ D ++MG+EV VL Sbjct: 38 FEEGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEVDALVLT 97 Query: 679 V-DRQGRIRLSIKEAT-EQSQPAAAPEAPAAE 708 D+ GR+ LS K A E++ A + E Sbjct: 98 KEDQDGRLILSKKRARFEKAWRRIEAAAESGE 129 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 9/105 (8%) Query: 590 EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 + DG + I + + + A RRIE A E G G V +V G + + G G + Sbjct: 100 DQDGRL-ILSKKRARFEKAWRRIE---AAAESGEPVDGTVIEVVKGGLIIDL--GVRGFL 153 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 S + +RV + +YL GQ + +V+E++R + + LS + Sbjct: 154 PASLVDIRRVPHLDEYL--GQTIECRVIELNRSRNNVVLSRRAVL 196 >UniRef50_Q6NDP1 30S ribosomal protein S1 n=165 Tax=Proteobacteria RepID=RS1_RHOPA Length = 565 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 + +E+ +E G+V G V I D+GAFV +G G +GL+H++ IA +RV T+ L +G Sbjct: 189 EQRQELVQNLEEGQVIDGVVKNITDYGAFVDLG-GIDGLLHVTDIAWRRVNHPTEVLTIG 247 Query: 670 QEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 Q V VK+++++ RI L +K+ + + P + Sbjct: 248 QTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNAR 288 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I VKI + E + + + I A+ + +TG+VT I D+GAFV Sbjct: 244 LTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFV 303 Query: 640 AIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 + G EGL+H+S+++ + + QEV V+VLEVD + RI L +K+ Sbjct: 304 ELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPW 363 Query: 698 PAAAPEAPAAEQGE 711 + P E Sbjct: 364 EVFVEKHPVGSTVE 377 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 9/122 (7%) Query: 584 GTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFG 636 G + + V++ D K + + E + VG G+V +FG Sbjct: 328 GKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHPVGSTVEGEVKNKTEFG 387 Query: 637 AFVAIGGGKEGLVHISQIADK-RVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATE 694 F+ + G +G+VH+S + K E+V D + G V VL+VD + RI L +K+ Sbjct: 388 LFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEG 447 Query: 695 QS 696 Sbjct: 448 DP 449 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 12/150 (8%) Query: 567 DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE----ITAEIEVG 622 D G VI + V + E+ ++++E +++ G Sbjct: 406 DWKLPGEQVIDNFKKGDMVK------AVVLDVDVEKERISLGVKQLEGDPFAEPGDVKKG 459 Query: 623 RVYTGKVTRIVDFGAFVAI-GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 V T +V + + G V I G + S++A R ++ +D +G++V +V++ D+ Sbjct: 460 AVVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDK 519 Query: 682 Q-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + ++++SIK + A + +++ G Sbjct: 520 KARKVQVSIKALEVAEEKEAIAQYGSSDSG 549 >UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria RepID=Q027A8_SOLUE Length = 572 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 14/193 (7%) Query: 521 VALNQAKGARLHILGVMEQAIN---APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR 577 AL +A + ILG + + + + F P + + +++ ++G+ IR Sbjct: 119 SALEKAFAEKAAILGTITAVVKGGVSVDVGVRAFMPASRSGARDAAEMEKLVGQ---EIR 175 Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 +++ D+ V E+ + A + E+ ++++ G + G + + D+GA Sbjct: 176 CRI----IKLDVADEDLVVDRRAVLEEEERASK--EQRYSQVKEGEIVHGTIRSLTDYGA 229 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQS 696 FV IG G + L+H++ I+ RV K D L +G +V K+L+VD + RI L +K+ Sbjct: 230 FVDIG-GVDALLHVADISWGRVNKPADVLNVGDKVEAKILKVDPAKKRISLGLKQLQPHP 288 Query: 697 QPAAAPEAPAAEQ 709 A + E+ Sbjct: 289 WDLVADKYKVGER 301 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D KI D K + + + + + +VG TG VTR+ DFGAFV Sbjct: 257 LNVGDKVEAKILKVDPAKKRISLGLKQLQPHPWDLVADKYKVGERVTGSVTRVTDFGAFV 316 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGLVH+S+++ K++ + D ++ G +V V VL V+ RI L +K+A Sbjct: 317 ELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVLGVNAADRRISLGLKQALGDPW 376 Query: 698 PAAAPEAPAAEQGE 711 AA + E Sbjct: 377 ADAAQKLAVGTVIE 390 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQ 670 + ++ VG V G VT I FGAFV + G EG+VH+ I+ +KR+ D +++GQ Sbjct: 376 WADAAQKLAVGTVIEGPVTSIQKFGAFVQVAEGVEGMVHVGDISAEKRINHPQDVVKVGQ 435 Query: 671 EVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 V +VLE+D + R+RL +K+ S E + Sbjct: 436 VVKAQVLELDVEKRRLRLGMKQLIPTSLDEYIAEHKEGD 474 >UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovibrionales RepID=C6BYI5_DESAD Length = 503 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 5/128 (3%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 I+ E++G + + + + E +++ V GKVT+++ FGAFV + G E Sbjct: 165 IKFEENGRNIVVSRRVLLEQEQEKAREAFMQDVQPDAVMEGKVTKLMPFGAFVELTPGVE 224 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-----RIRLSIKEATEQSQPAAA 701 G+VHIS+++ R K D +Q G EV V++L ++ + +I LS+K+ Sbjct: 225 GMVHISELSWSRSAKPEDVVQPGDEVSVRILSMEPRKDGKGLKIGLSLKQLQADPWDEIG 284 Query: 702 PEAPAAEQ 709 + A ++ Sbjct: 285 DKFKAGDK 292 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 9/150 (6%) Query: 564 KIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGR 623 K +DV+ G V + ++E DG ++ + +EI + + G Sbjct: 239 KPEDVVQPGDEVSVRI-----LSMEPRKDGKGLKIGLSLKQLQ--ADPWDEIGDKFKAGD 291 Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDR- 681 TG V R DFGAFV I G EGLVH+S+++ KRV K D + GQEV V V ++D Sbjct: 292 KVTGTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQEVAVMVKDIDPV 351 Query: 682 QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + RI LS+K+A ++ E Sbjct: 352 KRRIGLSMKDAAGDPWMDMEDTFKVGQEVE 381 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 A ++ +VG+ G V +FG F+ + G GL+ +S+I + + L+ Sbjct: 363 AGDPWMDMEDTFKVGQEVEGTVENRAEFGIFINLAPGITGLLPMSRITRSGKQAELEALK 422 Query: 668 MGQEVPVKVLEVD-RQGRIRLSI----KEATEQSQPAAAPEAPAA 707 G +V + + E++ ++ L+ K + AP Sbjct: 423 PGDKVKISIEEINTTDRKVTLTAGEAQKADGDNDWKEYTKSAPKK 467 Score = 41.7 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Query: 596 KIAATDGEK--AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 K T+GE+ A+ E ++VG G V I FV G +G+V + Sbjct: 4 KNLETNGEENFAELFEAFQSESNDNLQVGDQIKGTVISITKDSVFVDTGSKVDGVVDRDE 63 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS 688 + D E+ ++ G V + V+ ++ I LS Sbjct: 64 LTD---EEGELTVKDGDTVELYVISMNNNE-IVLS 94 >UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium thermophilum RepID=Q67NT8_SYMTH Length = 441 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 13/135 (9%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRI-----------EEITAEIEVGRVYTGKVTRIVDFGA 637 + VKI D K + + R E + ++ G V G V I DFGA Sbjct: 187 VGQKIRVKIIELDPYKGRVILSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITDFGA 246 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQS 696 F+ +G G +GL+HIS+++ R++ + + G+ + VKVL +DR+ G++ L +K+ Sbjct: 247 FIDLG-GVDGLLHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLKQVLPDP 305 Query: 697 QPAAAPEAPAAEQGE 711 + + P E Sbjct: 306 WDSVEEKYPEGAIVE 320 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + VK+ D EK K + + + + G + G V R+ FGAFV Sbjct: 274 VSEGERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEGTVARLTTFGAFV 333 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 + G +GL+HISQ+AD+R+ + + +G V VKV+ VD Q RI LS++ Sbjct: 334 ELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRISLSLR 385 Score = 66.7 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 22/169 (13%) Query: 554 RIHTIKINPDKIKDVIGKGGSVIRALTEETG--------TTIEIEDDGTVKIAATDGE-- 603 R ++++ D I +G I L E + +++ D+ V + + D + Sbjct: 60 RGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVLSVDTKGE 119 Query: 604 -------KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 + E+ + E G V +VT V G V + G + SQ+ Sbjct: 120 GGLRISKRRADEQLAWAEVERKFEAGEVIEAEVTEAVKGGLVVDL--GLRAFLPASQVDR 177 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEA 704 V ++ + +GQ++ VK++E+D +GR+ LS K+ E + AA Sbjct: 178 GYVADLSKF--VGQKIRVKIIELDPYKGRVILSRKQVLEAERTAARERF 224 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVL 677 + G + G+V R+ D V +G EG++ +++++ + + D L++G EV V VL Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVL 112 Query: 678 EVDRQGR--IRLSIKEATEQ-SQPAAAPEAPAAEQGE 711 VD +G +R+S + A EQ + + A E E Sbjct: 113 SVDTKGEGGLRISKRRADEQLAWAEVERKFEAGEVIE 149 >UniRef50_C1A406 30S ribosomal protein S1 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A406_GEMAT Length = 585 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDG--EKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFV 639 + I + + D EK +++ E+ + + VG GKV + FGAFV Sbjct: 361 VSIGEAIEAVVLKVDETEEKISLGMKQTEQDPWVILPLKYPVGTRINGKVRNLTSFGAFV 420 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 I G +GL+HIS ++ KRV+ ++ ++ G V V +L +D RI L +K+A E Sbjct: 421 EIEPGIDGLIHISDMSWTKRVQHPSEVVKKGDAVDVVILNIDSENKRISLGLKQAEEDPW 480 Query: 698 PAAAPEAPAAEQ 709 P + Sbjct: 481 LRIGETYPVGTE 492 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++I + +K+ D E+ + ++ +++ A+ VG +GKV I ++GAF+ Sbjct: 274 VQIGMELEIKVLDIDWERERISLGLKQLQSYPWKDVAAKYPVGTRVSGKVVSITNYGAFI 333 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 + G EGLVHIS+++ R V + + +G+ + VL+VD + +I L +K+ + Sbjct: 334 ELEPGIEGLVHISEMSWTRNVRHPSKIVSIGEAIEAVVLKVDETEEKISLGMKQTEQDPW 393 Query: 698 PAAAPEAPAAEQ 709 + P + Sbjct: 394 VILPLKYPVGTR 405 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%) Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 + E++ E+ +V G V I DFGAF+ +G G +GL+HI+ ++ R+ ++ +Q+G Sbjct: 220 KREKLMKELAKDQVRKGVVKNITDFGAFIDLG-GVDGLLHITDMSWGRISHPSEMVQIGM 278 Query: 671 EVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 E+ +KVL++D + RI L +K+ A + P + Sbjct: 279 ELEIKVLDIDWERERISLGLKQLQSYPWKDVAAKYPVGTR 318 Score = 55.2 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D V I D E + + I VG GKV R++D G V Sbjct: 448 VKKGDAVDVVILNIDSENKRISLGLKQAEEDPWLRIGETYPVGTELPGKVVRLMDKGVVV 507 Query: 640 AIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 +G EG V +SQ+ + V D+ ++VLEVD RI L++ E+ Sbjct: 508 DLGNDIEGFVPVSQLNPEGTVTNPADFTYEAMNFVMRVLEVDPIHRRIVLAVTSIPEEQP 567 Query: 698 PAAAP 702 P A Sbjct: 568 PKPAE 572 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Query: 559 KINPDKIKDVIG-KGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA 617 I ++ KD+ K G + L E + +G+V ++ K +R E I Sbjct: 89 TIPLEEFKDMPDLKAGDEVEVLLEHLE-----DQEGSVVLSK----KKADFMRVWERIRV 139 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E + G + + + G V + G + + SQIA +RV + + L GQ+ K++ Sbjct: 140 AYESDQPVEGTLVKKIKGGVVVDLM-GVDAFLPGSQIALRRVPNIDELL--GQKYEFKII 196 Query: 678 EVDRQGR-IRLSIKEATEQSQPAAAPE 703 +++++ R I +S + E + + Sbjct: 197 KLNKRRRNIVVSRRVILETERAGKREK 223 >UniRef50_B1YKU0 RNA binding S1 domain protein n=3 Tax=Bacillales RepID=B1YKU0_EXIS2 Length = 130 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 A E +V TGKVT I +FGAFVA+ +GLVHIS+I+ V+ + DY+++G EV VK Sbjct: 1 MANFEKDQVVTGKVTGIQNFGAFVALDEQTQGLVHISEISHDYVKDINDYVKVGDEVTVK 60 Query: 676 VLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 VL++D +++LSIK E + A + P G Sbjct: 61 VLDIDEANKKMKLSIKATQEAPKREARAKGPRKNAG 96 >UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergistaceae RepID=D1B5G8_THEAS Length = 504 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIE-------EITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D VK+ D E + ++ + +T+ VG+ G VT + DFGAFV Sbjct: 254 VQKGDKVKVKVIGIDRENNRVSLSLKQAQEDPWVGVTSRWTVGQRTKGVVTNLADFGAFV 313 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 I G EGL+HI ++ RV+ + L+ GQEV V +LEVD + RI L +K+ Sbjct: 314 EIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQLN-DPWA 372 Query: 699 AAAPEAPAAE 708 + + + Sbjct: 373 NVSEKYSKDQ 382 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 7/115 (6%) Query: 587 IEIEDDGTVKIAATDGEK------AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 ++ + V I DG++ K ++ + +V T KV R+ DFGAFV Sbjct: 340 LKKGQEVEVVILEVDGDRRRIGLGLKQLNDPWANVSEKYSKDQVVTVKVVRLADFGAFVE 399 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 694 I G EGL+HISQ++ +RVEK +D L+ GQEV K+LEV+ + RIRLS++ E Sbjct: 400 IEDGVEGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRIRLSLRALEE 454 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 EE A + G + G+V+ I FG FV +G EGLVHI++++ +R K D +Q G +V Sbjct: 202 EEFYANVHEGDILEGEVSSITSFGVFVNLGA-MEGLVHITELSWQRGAKAKDLVQKGDKV 260 Query: 673 PVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 VKV+ +DR+ R+ LS+K+A E ++ Sbjct: 261 KVKVIGIDRENNRVSLSLKQAQEDPWVGVTSRWTVGQR 298 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITA-EIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 + D T+ + + + +E+I + I G V G V + G V +G EG Sbjct: 1 MVDGLTMNNSGVSEPEPETMESIMEQIDSVNIHRGSVVEGTVVDAREDGWLVDVGYKCEG 60 Query: 648 LVHISQIADKR-VEKVTDYLQMGQEVPVKVLEV--DRQGRIRLSIKEAT-EQSQPAAAPE 703 + + + + VEKV + Q+G + V+V V + ++ LS ++ A + Sbjct: 61 FLPRREWSHRAIVEKVGEP-QVGDRIRVQVTNVGQGEEAQLNLSRWRCEFDERWNALEEK 119 Query: 704 APAAEQGE 711 ++ E Sbjct: 120 LAQSDVIE 127 >UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium kluyveri RepID=A5N6D1_CLOK5 Length = 314 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P H D +K+ IGK V I+++ + + + Sbjct: 55 LRAFIPASHISVKYTDDLKEFIGKTLKV---------KLIQLDKSKNKIVLSGKEVEKLE 105 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 +++ + I G G+V+RI +FG FV +G G EGLVHIS+++ K+++ ++ + Sbjct: 106 LEEMSKKLWSTISKGDKIEGRVSRITNFGVFVDLG-GVEGLVHISELSWKKIKDPSEVVS 164 Query: 668 MGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 +G ++ V VL +++ + RI LSIK + + + Sbjct: 165 VGDKLKVYVLNLNQDRNRISLSIKRTLNSPWENIGKKYKSND 206 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 9/134 (6%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKV 629 + + + + + + D V + + ++ + ++ E I + + + G V Sbjct: 154 KKIKDPSEV-VSVGDKLKVYVLNLNQDRNRISLSIKRTLNSPWENIGKKYKSNDIVDGIV 212 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLS 688 +++++ GAF+ I G EGLVHIS+I+ + + + L++G +V VK+L +D + RI LS Sbjct: 213 SKVINIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGDKVKVKILNIDEKASRISLS 272 Query: 689 IKEATEQSQPAAAP 702 IKEA ++ P Sbjct: 273 IKEAQDKFSPNFKE 286 >UniRef50_B0VI92 30S ribosomal subunit protein S1 (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI92_9BACT Length = 932 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 32/264 (12%) Query: 467 GLVKEGDNYVVLSDILGDEDHL--GDMDFKVAGSRDGISALQMDIKIEGITKE------- 517 G+++ ++ D+LG E L M K + D ++ K+ I +E Sbjct: 202 GIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGKELYFKVVNIDEEHHNIILS 261 Query: 518 ---IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN--PDKIKDVIGKG 572 +++ Q + L + + + ++ +I+++ I I+ GK Sbjct: 262 RRQVLEEEAEQKRQELLRKIQI-DAELDGEVKNITQYGAFIDLGGIDGLLHLTDMSWGKL 320 Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVY 625 L I D VK+ D E + + E I + G Sbjct: 321 NHPSEMLQ--------IGDKVKVKVINFDPETNRISLGMKQLVPHPWENIEIKYPEGSRV 372 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG- 683 TGKV + FGAFV + G EGLVHIS+++ K++ +L++G+ + VL++D++ Sbjct: 373 TGKVVNLKPFGAFVELEPGVEGLVHISEMSWTKKITDAHKFLKIGETINAIVLDIDKENK 432 Query: 684 RIRLSIKEATEQSQPAAAPEAPAA 707 RI L +K+ P Sbjct: 433 RISLGMKQMEPNPWLTIEDRYPIG 456 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 11/163 (6%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 I F P + IGK E + I+++ I + + Sbjct: 219 IEAFLPGSQMSLKPIPNLDQFIGK---------ELYFKVVNIDEEHHNIILSRRQVLEEE 269 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 A ++ +E+ +I++ G+V I +GAF+ +G G +GL+H++ ++ ++ ++ LQ Sbjct: 270 AEQKRQELLRKIQIDAELDGEVKNITQYGAFIDLG-GIDGLLHLTDMSWGKLNHPSEMLQ 328 Query: 668 MGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +G +V VKV+ D + RI L +K+ + P + Sbjct: 329 IGDKVKVKVINFDPETNRISLGMKQLVPHPWENIEIKYPEGSR 371 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIE-------EITAEIEVGRVYTGKVTRI 632 + ++I + + D E + ++ + I +G + T K+ + Sbjct: 407 ITDAHKFLKIGETINAIVLDIDKENKRISLGMKQMEPNPWLTIEDRYPIGTILTRKIKSL 466 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 690 FGAFV I G +GL+HIS I+ KR+ + + QEV VL +DR Q R+ L +K Sbjct: 467 TAFGAFVEIEEGIDGLIHISDISWTKRIYHPREVYKKNQEVEAVVLSIDRAQHRVALGVK 526 Query: 691 EATEQSQPAAAPEAPAAEQ 709 + P + Sbjct: 527 QLVPDPWETLDQSLPINTE 545 Score = 60.6 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG---KEGLVHISQIADKRVEKV 662 + E + + + GK+ +++ G V I EG V +S +A ++E Sbjct: 527 QLVPDPWETLDQSLPINTEVKGKIGKLIPKGVLVDIPVNNDVVEGFVPVSHLAIPKLEHS 586 Query: 663 TDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEA 704 D +G+E+P+KV+E+D R+ LS+K P E Sbjct: 587 EDAFYIGEEIPLKVIELDMENRRLILSVKAFFFSRDPKLQEEY 629 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 K + ++ + + EE + + G + G V I D V IG EG++ IS+ A Sbjct: 90 KELTQEEKEHQEMLSMYEESFSSFKKGEIIEGTVVDITDKDVRVDIGFKSEGIIPISEFA 149 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 + ++ + V + E++ +G++ LS K+A Sbjct: 150 YTGIPELNSV------IKVYINEIENGEGKLLLSKKKAD 182 >UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflexi (class) RepID=A9B766_HERA2 Length = 397 Score = 118 bits (297), Expect = 7e-25, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P +N G+ ++ + + + + D ++ ++ + Sbjct: 137 VRGFVPASQV--VNLHSRTGTEGQQSAMTKMVGQNIPLKVIEVDRDRNRLVLSERAAMQR 194 Query: 608 AIR-RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 + + E + +E G V TG+V ++ FGAF+ +G G +GL HIS+++ +RV + L Sbjct: 195 WRQSQKERLLETLEPGAVVTGRVNQLTPFGAFIDLG-GADGLAHISELSWQRVNHPREVL 253 Query: 667 QMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAE 708 Q GQEV V VLEVDR RI LS++ + Sbjct: 254 QPGQEVQVYVLEVDRDRERIGLSLRRLQPDPWATIDQRYDLGQ 296 Score = 62.1 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 8/105 (7%) Query: 595 VKIAATDGEKAKHAIRRIE-----EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 V D E+ ++RR++ I ++G++ G+VT I FG FV + G EGL+ Sbjct: 263 VLEVDRDRERIGLSLRRLQPDPWATIDQRYDLGQLIVGEVTNIAPFGVFVRVEEGVEGLI 322 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEAT 693 H S++ + + D LQ GQ+V VKV+ +DRQ R+ LS++ Sbjct: 323 HASELTEN--GQSPDSLQQGQQVQVKVISLDRQRQRLGLSLRRVD 365 >UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacillaceae RepID=RS1H_BACC1 Length = 382 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 8/131 (6%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTG 627 + E+ +E VK+ + D + + ++ E I E++ G + G Sbjct: 220 ISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREG 279 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIR 686 V R+V FGAFV I G EGLVH+SQIA++ V+ + L+MGQEV VKVLEV + RI Sbjct: 280 IVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRIS 339 Query: 687 LSIKEATEQSQ 697 LSIKEA E++ Sbjct: 340 LSIKEAFEENN 350 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 13/129 (10%) Query: 595 VKIAATDGEKAKHA-----------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 VKI D EK + + +E + ++ G V G V R+ DFGAFV +G Sbjct: 151 VKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVG- 209 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAP 702 G +GLVHISQI+ +RVE+ ++ L+ GQ+V VKVL VD RI LSIK A A Sbjct: 210 GVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAG 269 Query: 703 EAPAAEQGE 711 E A + E Sbjct: 270 EVKAGDIRE 278 Score = 58.6 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + E++VG V TG VT++ + V +G +G++ IS++A+ +EK +D +++ Q + +K Sbjct: 12 SKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELK 71 Query: 676 VLEVDRQGRIRLSIKEAT-EQSQPAAAPEAPAA 707 ++++ + + LS + E++ + + Sbjct: 72 IIKL-EENDLVLSKRAVDAEKAWIELQEKFTSG 103 Score = 54.0 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 P ++ +K DV+ + + E +E E+D + A D EKA Sbjct: 45 IPISELANVHIEKASDVV-----ELDQILELKIIKLE-ENDLVLSKRAVDAEKA------ 92 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E+ + G V+ V IV+ G V + G G + S + VE TDY G+ Sbjct: 93 WIELQEKFTSGHVFDVTVKDIVNGGLVVDL--GVRGFIPASLVEVHYVEDFTDY--KGKT 148 Query: 672 VPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 + VK++E+DR+ R+ LS K E + EA Sbjct: 149 LAVKIVELDREKNRVILSHKAVVELELDSKKKEA 182 >UniRef50_C5CIV0 RNA binding S1 domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIV0_KOSOT Length = 572 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 +++ + + D TVK+ D EK K ++ + + VG V G V I Sbjct: 232 SQKVHDVLNVGDKVTVKVIDVDPEKKKISLSLKQLQEDPWNTVEEKYPVGSVVEGVVKSI 291 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRV-EKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIK 690 V FG FV I G EGLVHIS++ V + + ++ G V VK+ ++D++ R + LS + Sbjct: 292 VPFGFFVMIEPGVEGLVHISEVFWGNVRRDLKELIREGDRVKVKIKDIDKEKRTLSLSYR 351 Query: 691 EATEQSQPAAAPEAPAAE 708 EA + E Sbjct: 352 EALGDPWDNIEEKYKVGE 369 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%) Query: 573 GSVIRALTEETGT-TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 G I +E + GT + + K + E + E G G + Sbjct: 149 GRPIPEGEQEFKVINFRKKKRGTNIVVSLTAFKEEKVKAYFEAL----ETGSTVEGTIES 204 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 I DFGAFV + GL+ S+++ +KV D L +G +V VKV++VD + +I LS+K Sbjct: 205 IKDFGAFVRLTNEVVGLIPASEVSWDPSQKVHDVLNVGDKVTVKVIDVDPEKKKISLSLK 264 Query: 691 EATEQSQPAAAPEAPAAEQGE 711 + E + P E Sbjct: 265 QLQEDPWNTVEEKYPVGSVVE 285 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 8/133 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 I D VKI D EK ++ + I + +VG + GKV +++ GA V Sbjct: 326 IREGDRVKVKIKDIDKEKRTLSLSYREALGDPWDNIEEKYKVGEIVDGKVVKVLPTGAIV 385 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G V +S+++ V++V D ++ EV K+L +D++ R+RLS+K+ATE Sbjct: 386 ELEEYVSGFVPVSEMSWNFVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPWQ 445 Query: 699 AAAPEAPAAEQGE 711 E + E Sbjct: 446 KVHTELKVGDYVE 458 Score = 68.3 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 13/146 (8%) Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTR 631 + ++ + KI + D E + +++ E++VG GK+TR Sbjct: 404 FVDRVEDVVKESSEVKTKILSIDKENRRMRLSLKQATEDPWQKVHTELKVGDYVEGKITR 463 Query: 632 IVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV--DRQGRIR-- 686 ++ GA V + G G E + SQ+A KRVE + D +++G+ K++ + D + +R Sbjct: 464 LIKSGAVVMVDGYGVEAFLPASQVAMKRVENLEDAIKIGEHRRFKIIRLVYDPEKDVRNM 523 Query: 687 -LSIKEATEQSQPAAAPEAPAAEQGE 711 +SIK+ + +A GE Sbjct: 524 VVSIKQLLLDKEKEETQKALEELSGE 549 Score = 42.5 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + +++++E+ GR T +V I G V + G +G S++ V+ + Sbjct: 14 SMEDILKQMDEVDE--RRGRSKTAEVHSIQPDGLLVILEGKLDGFAPESEL----VKPLK 67 Query: 664 DYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 +Y +G ++ V++++VD +GR +S K Sbjct: 68 EY-NIGDKIEVQIMKVDEDEGRSVVSEKRI 96 >UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK41_9CRYT Length = 250 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 101/241 (41%), Gaps = 19/241 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRT--GVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 + + RIDGR + IR + + G + S + +G+T+ L+T+ G Sbjct: 9 EILNSEGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTK-LITSICGPI----P 63 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 L + ++ P+ + G R + + R + + ++ Sbjct: 64 LLNSSSQSGIQLHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESAISEIYVKSQI 123 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + + + E++G A++ SLAL +AG+ +K V +GL + L DI+ Sbjct: 124 I-ININVLEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGR----IPLYDIVQA 178 Query: 485 E-DHLGD-MDFKVAGSRDGIS--ALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 E D L M F + + + I+ ++++ K++ ++I+ + L + A HI ++ Sbjct: 179 EFDVLKTIMSFAIYSTDENIAPITMELNTKVD---EDILNLLLEHSAAACKHISKILRNI 235 Query: 541 I 541 + Sbjct: 236 L 236 >UniRef50_P37560 Uncharacterized protein yabR n=35 Tax=Firmicutes RepID=YABR_BACSU Length = 128 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 61/93 (65%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG GK+T I +FGAFV + GG GLVHIS++AD V+ + D+L++G +V VKV+ Sbjct: 3 IEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVIN 62 Query: 679 VDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V++ G+I LSIK+A ++ Q + E E Sbjct: 63 VEKDGKIGLSIKKAKDRPQARPRNDFRPKESFE 95 >UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus RepID=A8YV34_LACH4 Length = 403 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 8/125 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 ++ ++ D VK+ D ++ + + E+ TA++ G V+ G+V + Sbjct: 234 VDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSL 293 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKE 691 +FGAFV + G +GLVH+S+I++K V+K +D L++ Q V VKVL +D RI LSIK Sbjct: 294 TNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIKA 353 Query: 692 ATEQS 696 A + Sbjct: 354 ADSNA 358 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR 610 F P +K IGK + +TE I+ + + E+ + Sbjct: 136 FLPASLISNRYVSDLKPYIGKTMKL--KITE-----IDPNKNRLILSHKDLIEEERE--E 186 Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 +++ +++ VG V GKV+R+ +FGAF+ +G G +GLVHIS+I+ K V+K +D L+ GQ Sbjct: 187 AFDKVASQLVVGDVIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQ 245 Query: 671 EVPVKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +V VKV+ + D + RI LSIK+ A + + E Sbjct: 246 DVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFE 287 Score = 59.0 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 12/137 (8%) Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV 624 ++D++ G + G + + + K + A +++ + E G Sbjct: 62 LRDLVKPGDKFKALVLRRAGG----DKENGEFFFSVTRLKEREAYDKLQ---KDFEEGNA 114 Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQG 683 G VT V G V + G G + S I+++ V + Y +G+ + +K+ E+D + Sbjct: 115 IEGTVTSSVRGGLLVDV--GTRGFLPASLISNRYVSDLKPY--IGKTMKLKITEIDPNKN 170 Query: 684 RIRLSIKEATEQSQPAA 700 R+ LS K+ E+ + A Sbjct: 171 RLILSHKDLIEEEREEA 187 >UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharomycetaceae RepID=RRP41_YEAST Length = 246 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 90/236 (38%), Gaps = 15/236 (6%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R+DGR + +R + P GS+ +G + + ++ L M Sbjct: 10 EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVK--GPKEP-RLKSQMD 66 Query: 371 ERTDTFLFHYNFPPYSVGETGMVG-SPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVV 428 N +S E +RR + R + ++ +P T + + Sbjct: 67 TSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNV-MLNIYPRTVIDIE 125 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488 + E +G + + G +LAL+DAG+ + ++GI++GL + L D E++ Sbjct: 126 IHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY----DTTPLLDTNSLEENA 181 Query: 489 -GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + V G + +S L ++ K I + ++ L + +M++ + Sbjct: 182 MSTVTLGVVGKSEKLSLLLVEDK---IPLDRLENVLAIGIAGAHRVRDLMDEELRK 234 >UniRef50_UPI000034EEAC 3'''' exoribonuclease family domain 1 protein-related n=1 Tax=Arabidopsis thaliana RepID=UPI000034EEAC Length = 469 Score = 117 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 50/87 (57%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N + K +G + +ETG+M RQA++AV V+ +T VF +V DF PL V+ Sbjct: 18 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVFTSVCLADVPSEPSDFLPLYVH 77 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGET 89 YQER A GR G FF+REGR + E Sbjct: 78 YQERFSAVGRTSGGFFKREGRTKDHEV 104 >UniRef50_A8ZTA2 Ribosomal protein S1 n=22 Tax=Deltaproteobacteria RepID=A8ZTA2_DESOH Length = 604 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + D+ T+K+ + D +K K + E + VG TGKV I ++G FV Sbjct: 253 FTVGDNVTLKVLSFDLDKKKISLGMKQLTPDPWESAAEKYPVGVKTTGKVVSITNYGIFV 312 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 + G EGL+H+S+I+ R + + + +G+EV VL++ RI L +K+ Sbjct: 313 ELEEGVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRRISLGMKQVEPNPW 372 Query: 698 PAAAPEAPAAEQGE 711 + + P E Sbjct: 373 EVISEKYPVGTVIE 386 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E+ + G+V G V I ++G FV +G G +GL+HI+ I+ RV ++ +G V Sbjct: 202 ELMETLADGQVVEGIVKNITEYGVFVDLG-GIDGLLHITDISWGRVRHPSELFTVGDNVT 260 Query: 674 VKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +KVL D + +I L +K+ T +AA + P + Sbjct: 261 LKVLSFDLDKKKISLGMKQLTPDPWESAAEKYPVGVK 297 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQ 670 E I+ + VG V G++ I DFG F+ I +GLVHIS I+ KR++ ++ + G Sbjct: 372 WEVISEKYPVGTVIEGRIKNITDFGLFIGIDDDIDGLVHISDISWTKRIKHPSEIYKKGD 431 Query: 671 EVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 V VLE+D+ R + IK+ + P + Sbjct: 432 LVRAVVLEIDKANERFSMGIKQLESDPWESVRDRYPIGTK 471 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E + +G +G VT + DFG FV + G EGLVH+S+++ +R++ ++G E Sbjct: 459 WESVRDRYPIGTKVSGVVTNVTDFGIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAE 518 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + +V+ V+ + +I LSIK + + +G Sbjct: 519 LTARVMNVNADERKIGLSIKRLDVEDDKTLLKDYVDNSRG 558 >UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae RepID=A4SGB6_PROVI Length = 602 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++++ V + D + ++ E I + VG G+V I D+GAFV Sbjct: 271 VDLDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIELKYPVGSKAQGRVVSITDYGAFV 330 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 I G EGLVHIS+++ + ++ ++ +GQEV +L +D+ ++ LS+K E Sbjct: 331 EIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVNEDPW 390 Query: 698 PAAAPEAPAAEQ 709 A + + + Sbjct: 391 IALSEKYVENTR 402 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + I+VG V G V I DFG FV +G G +GLVHI+ I R+ ++ + + Q + V Sbjct: 221 MLDSIKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVDLDQPIKV 279 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V+ D R+ L +K+ + P + + Sbjct: 280 VVVGFDENTKRVSLGMKQLEAHPWENIELKYPVGSKAQ 317 Score = 102 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 9/140 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGE--KAKHAIRRIEE-----ITAEIEVGRVYTGKVTRI 632 + G + + + I D + K +++R+ E ++ + + G V+ I Sbjct: 351 IKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYVENTRHKGTVSNI 410 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 DFG FV + G +GLVHIS ++ K++ ++ ++ QE+ VKVL+ D RI L K Sbjct: 411 TDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIALGHK 470 Query: 691 EATEQSQPAAAPEAPAAEQG 710 + + + Sbjct: 471 QMNPDPWGGFEQQYAVGAES 490 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ + VK+ D + A + VG + ++++I++ G V Sbjct: 445 VKKNQELEVKVLKFDVHARRIALGHKQMNPDPWGGFEQQYAVGAESSAEISQIIEKGVIV 504 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLS----IKEATE 694 + G +G V + + V+ + ++G +P++V+E D++ RI LS K+ ++ Sbjct: 505 ILPGDVDGFVPATHLLQGGVKDIHSSFKIGDALPLRVIEFDKENKRIILSALEYFKDKSK 564 Query: 695 QSQPAAAPEAPAAEQ 709 + + P ++ Sbjct: 565 EEIESYLQAHPNEKK 579 >UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FAB9_ACIC5 Length = 637 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 9/143 (6%) Query: 574 SVIRALTEETGTTIEIE------DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTG 627 +R L G IE+ G V ++ + + + +R E + +E G + TG Sbjct: 222 RPVRNLDAYIGQPIEVRVIKLNKKRGNVVVSRKEILEEEQTAKRSETL-EHLEEGSILTG 280 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIR 686 V + D+GAFV +G G +GL+HI+ ++ R+ D + +G E+ VKVL+ DR R+ Sbjct: 281 TVKNLTDYGAFVDMG-GIDGLLHITDMSWGRLTHPRDLVNVGDEIQVKVLKFDRDKQRVS 339 Query: 687 LSIKEATEQSQPAAAPEAPAAEQ 709 L K+ T A P + Sbjct: 340 LGFKQLTPDPWLDATERYPVGAR 362 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ VK+ D +K + + + T VG G+V + D+G+FV Sbjct: 318 VNVGDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLDATERYPVGARVRGRVLSVTDYGSFV 377 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 + G EGLVH+S++ KR++ + L+ G EV VL V+ RI L +K+ + Sbjct: 378 ELEQGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQLQDNPW 437 Query: 698 PAAAPEAPAAEQGE 711 + P E Sbjct: 438 ETLGDKYPTGATVE 451 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQ 670 E + + G G+V + DFGAF+ I G +GLVH+S ++ KRV+ ++ L+ G+ Sbjct: 437 WETLGDKYPTGATVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGE 496 Query: 671 EVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAE 708 +V VL V+ + R+ L IK+ + + Sbjct: 497 KVRAVVLGVEPENRRLSLGIKQLQPDVWETFFEQHRTGD 535 Score = 84.1 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E + G V GKV R FGAF+ I G EGL H+S+ D+ V L+ GQE Sbjct: 524 WETFFEQHRTGDVVHGKVLRTAQFGAFIEIAEGVEGLCHVSEATDQHGAPVN--LEQGQE 581 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPA 706 K+++++ + ++ LS++ E++ A A Sbjct: 582 YDFKIIKMNPDEKKVGLSLRAVGEEASRADVEAYKA 617 >UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcaceae RepID=RS1_STAS1 Length = 393 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 8/153 (5%) Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 619 I+ D I+D G V++ EE + V ++ E ++A ++ +E+ + Sbjct: 138 ISTDFIEDFSDFEGQVLKLKVEELDPA-----NNRVILSRKAVEALENAEKK-DELLESL 191 Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 G V GKV R+ +FGAFV IG G +GLVH+S+++ + V+ D + +G+ V VK+ V Sbjct: 192 NEGDVIEGKVARLTNFGAFVDIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSV 250 Query: 680 DRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 D+ RI LSIK+ + E + E Sbjct: 251 DKDSERISLSIKDTLPSPFESIKGEFNEGDVIE 283 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I + VKI + D + + + E I E G V G V R+ +FGAFV Sbjct: 237 VSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFV 296 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 I G +GLVHIS+I+ + ++ L+ GQ V VKVL VD + RI LSIK Sbjct: 297 EIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNEN 355 Score = 57.5 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVTDYLQMGQE 671 E + +I+ G TG+V I + VA+ G K G++ ISQ++ ++ +D +++G E Sbjct: 7 ESMINDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDE 66 Query: 672 VPVKVLEV--DRQGRIR---LSIKEATEQ 695 + V +V D + LS ++ + Sbjct: 67 IGAYVTKVEYDEENETGAYILSKRQLETE 95 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 583 TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 T + E++ I + + + + ++E +++ + KVT +V G V + Sbjct: 72 TKVEYDEENETGAYILSKRQLETEKSYEFLQE---QLDNNQTIEAKVTEVVKGGLVVDV- 127 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAA 701 G+ G V S I+ +E +D+ GQ + +KV E+D R+ LS K Sbjct: 128 -GQRGFVPASLISTDFIEDFSDF--EGQVLKLKVEELDPANNRVILSRKAVEALENAEKK 184 Query: 702 PE 703 E Sbjct: 185 DE 186 >UniRef50_Q89AJ3 30S ribosomal protein S1 n=296 Tax=Proteobacteria RepID=RS1_BUCBP Length = 566 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + ++ G + +G V + D+GAFV +G G +GL+HI+ +A KRV+ ++ + +G EV + Sbjct: 185 LLETLQEGLIVSGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNIGDEVKI 243 Query: 675 KVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 K+L+ DR+ R+ L +K+ ++ + P + Sbjct: 244 KILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTK 279 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D+ +KI D EK + + +I+ TG+VT + D+G FV Sbjct: 235 VNIGDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFV 294 Query: 640 AIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 I G EGLVH+S++ + +Q+ V V +L++D + RI L +K+ Sbjct: 295 EIEEGVEGLVHVSEMDWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPW 354 Query: 698 PAAAPEAPAAEQ 709 + + Sbjct: 355 MEFSKKYNKGSH 366 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 ++I+++ K + E + + G GK+ I DFG F+ + G + Sbjct: 333 LDIDEERRRISLGLKQCKNNPWM----EFSKKYNKGSHVVGKIKSITDFGIFIGLEGSID 388 Query: 647 GLVHISQIADKRV--EKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQS 696 GLVH+S I+ E V Y + G+EV VL+VD RI L IK+ E Sbjct: 389 GLVHLSDISWNISGEESVKKY-KKGEEVLAVVLQVDPDRERISLGIKQLQEDP 440 Score = 52.5 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 10/110 (9%) Query: 595 VKIAATDGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 V D E+ I++++E + + G + +G + +I + V++ +GL+ Sbjct: 419 VLQVDPDRERISLGIKQLQEDPFAKYVSSHKKGSLVSGTIKKIDNNVIVVSLSEHIDGLI 478 Query: 650 H---IS-QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATE 694 IS +I + K + ++G+ V VK+ +D++ R I LSI E E Sbjct: 479 KFLNISDEIMNVHDNKPWNKAKIGEIVEVKLNSIDKKERIIYLSILEKQE 528 >UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria RepID=B8FI70_DESAA Length = 616 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K + I G+V G V I ++G FV +G G +GL+HI+ I+ RV+ ++ Sbjct: 225 KEREEQRSSTLQNIHEGKVVEGVVKNITEYGVFVDLG-GIDGLLHITDISWGRVKHPSEL 283 Query: 666 LQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +GQ + VKVL++D + R+ L +K+ E A+ P E+ Sbjct: 284 FGVGQTITVKVLDLDLERERVSLGMKQLKEDPWTTASDRYPVGER 328 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 9/132 (6%) Query: 589 IEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI 641 + TVK+ D E+ + + + VG +GKV + D+GAFV + Sbjct: 286 VGQTITVKVLDLDLERERVSLGMKQLKEDPWTTASDRYPVGERVSGKVVSLTDYGAFVEL 345 Query: 642 GGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPA 699 G EGL+H+S+++ R + + + +G ++ VL++ R+ L +K+ Sbjct: 346 EEGIEGLIHVSEMSWTRKIRHPSKVVSVGDDLEAVVLDIKPSNRRVSLGMKQVAPNPWDV 405 Query: 700 AAPEAPAAEQGE 711 + P E Sbjct: 406 IGEKYPIGTTIE 417 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 8/138 (5%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRI 632 G + D+ + D E + E I+ +VG G +T + Sbjct: 451 INHPGDVYKKGDEVRAIVLHIDRENERFSLGIKQLEPDPWETISERYQVGTKVNGLITSV 510 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 DFG FV + G EGLVH+S++A ++V+ +G V V+ ++ ++ RI LSIK Sbjct: 511 TDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVGDTVETVVVNINPKERRIGLSIKR 570 Query: 692 ATEQSQPAAAPEAPAAEQ 709 E Q E A+ + Sbjct: 571 LEEDEQEGYFNEYMASNK 588 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 17/159 (10%) Query: 556 HTIKINPDKIKDVIG---KGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEKAKHAIRR 611 I+I+ D + IG +G IR E G EI D+ V + D E + + Sbjct: 77 KIIQIDKDYVLVDIGYKSEGLIPIREFIEPDGTVAAEIGDEVEVMVERLDSEDEGVMVSK 136 Query: 612 --------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 EEI E + G +T V G V I G + SQ+ + V + Sbjct: 137 EKASKIKVWEEIKVAYEEEGIVEGTITHRVKGGFSVDI--GVPAFLPGSQVDLRPVRDLD 194 Query: 664 DYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAA 701 +G+ KVL+ + ++ I LS + E+ + Sbjct: 195 SM--VGKVFTFKVLKYNRKRSNIVLSRRVILEKEREEQR 231 Score = 42.5 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE-KVTDYLQMGQE 671 EE E G V TGK+ +I V IG EGL+ I + +E T ++G E Sbjct: 62 EESFKRFEEGEVVTGKIIQIDKDYVLVDIGYKSEGLIPIRE----FIEPDGTVAAEIGDE 117 Query: 672 VPVKVLEVDRQ 682 V V V +D + Sbjct: 118 VEVMVERLDSE 128 >UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroidetes RepID=C6XS49_PEDHD Length = 644 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 28/264 (10%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRD-----------GISALQMDIKIEGIT 515 G VK ++ DI+G E L + RD + + + K ++ Sbjct: 174 GFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVVKINHEFKNVVVS 233 Query: 516 KEIM-QVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 +I+ + L K + L Q + +I++F + I+ + ++ Sbjct: 234 HKILIEDDLESQKVEIVSKLEK-GQVLEGTVKNITDFG-----VFIDLGGVDGLLHI-TD 286 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTG 627 + E + +++ V + D EK + A E + A++ +G G Sbjct: 287 ISWGRIEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLNADLAIGSKVKG 346 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRI 685 K+ + D+GAF+ I G EGL+H+S+++ + + ++L++G E+ +VL +DR+ ++ Sbjct: 347 KIVTVADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTLDREDRKM 406 Query: 686 RLSIKEATEQSQPAAAPEAPAAEQ 709 L IK+ T+ A P + Sbjct: 407 SLGIKQLTQDPWQNVAERYPIGSK 430 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ ++ D E K + + + +G +T V + +FG FV Sbjct: 386 LKVGDEIEAEVLTLDREDRKMSLGIKQLTQDPWQNVAERYPIGSKHTAVVKNMTNFGVFV 445 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQ 697 I G +GL+HIS ++ K+V ++ ++G + V VLE+D R + L K+ E Sbjct: 446 EIEEGIDGLIHISDLSWSKKVNHPNEFTKVGDTLAVVVLELDVDNRKLSLGHKQLEENPW 505 Query: 698 PA 699 Sbjct: 506 DT 507 Score = 44.0 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 6/102 (5%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 K R E I ++ R+ G V G V I G E + SQI ++ + Sbjct: 151 KRAKTQRSWESINEALDNDRIINGFVKSRTKGGLIVDIM-GVEAFLPGSQID---IKPIR 206 Query: 664 DY-LQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPE 703 DY + +G+ + KV++++ + + + +S K E + E Sbjct: 207 DYDVYVGKTMEFKVVKINHEFKNVVVSHKILIEDDLESQKVE 248 Score = 43.2 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 8/99 (8%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K + +I G + +G V I + + +G +GLV S+ D Sbjct: 72 KKFEDMYTDTFNQITQGEIISGTVVSINNKDVVLNVGFKSDGLVSTSEFRDTP------D 125 Query: 666 LQMGQEVPVKVLE-VDRQGRIRLSIKEA-TEQSQPAAAP 702 L++G +V V V D G++ LS K A T++S + Sbjct: 126 LKVGDKVDVFVEAPEDANGQLILSRKRAKTQRSWESINE 164 >UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Tax=Listeria monocytogenes str. 1/2a F6854 RepID=Q4EP69_LISMO Length = 355 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 + + + +EI+ G V G V R+ +FGAFV IG G +GLVHISQI+ K + + L Sbjct: 235 EKASQKQALLSEIKEGDVIEGTVQRLANFGAFVDIG-GVDGLVHISQISYKHIATPQEVL 293 Query: 667 QMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + GQ+V VKV+ +D + RI LSIK +A E Sbjct: 294 EEGQKVTVKVIGIDPENERISLSIKATLPGPWDGITEKAQVGSVLE 339 Score = 58.3 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 3/137 (2%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 R ++ ++++ + + + + E G TG VT + D Sbjct: 33 RKTSQADEASVKVASELEIPKIRLTNGGLHMSEDLFDVEVRNFEEGDKVTGTVTSVEDKQ 92 Query: 637 AFVAIGGGK-EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT-E 694 +V I G K +G+V IS++++ VE +D + +G + + V +V+ + LS ++ E Sbjct: 93 VYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTKVEDDI-LVLSKRKVDAE 151 Query: 695 QSQPAAAPEAPAAEQGE 711 ++ + + E E Sbjct: 152 KASDDIKAKFESGEVFE 168 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 17/160 (10%) Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 P + P I+ + DV+ G + + + I + + D E Sbjct: 98 PGSKLDGVVPISELSNIHVETASDVVSV-GDTLDLIVTKVEDDILV-----LSKRKVDAE 151 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 KA ++I A+ E G V+ V+ +V G V + G V S + D VE Sbjct: 152 KAS------DDIKAKFESGEVFEAVVSDVVKGGLVVDL--GVRAFVPASLVEDHFVEDFA 203 Query: 664 DYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAP 702 DY G + KV+E + R+ LS + E + + Sbjct: 204 DY--KGTTLTFKVVEFEPENNRVILSHRAVVETEKASQKQ 241 Score = 46.3 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E TVK+ D E + ++ + IT + +VG V GKV R+V FGAFV Sbjct: 293 LEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGITEKAQVGSVLEGKVVRLVTFGAFV 352 Query: 640 AI 641 I Sbjct: 353 EI 354 >UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2R4_9DELT Length = 507 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 12/143 (8%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHA----------IRRIEEITAEIEVGRVYTGKVT 630 E+ +++ TVK+ + D +K + + + G GKVT Sbjct: 241 EKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQAGPDPWDTVGEKFAAGDRVEGKVT 300 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 R+ DFGAFV I G EGL+H+S+++ +R+ K +D + G+ V V V +VD + RI LS Sbjct: 301 RLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKRRISLS 360 Query: 689 IKEATEQSQPAAAPEAPAAEQGE 711 +KE A + E Sbjct: 361 LKEVAGDPWAAVSDTFAIGSTVE 383 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 + E+A+ +R +E + G V VTR FGAFV + G EGLVH+S+++ R Sbjct: 185 QEQERAESELRFLESV----NPGDVIPAVVTRFAAFGAFVEVAPGLEGLVHLSELSWSRA 240 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQG----RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 EK D + +GQ V VKVL DR RI LSIK+A + A ++ E Sbjct: 241 EKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQAGPDPWDTVGEKFAAGDRVE 296 Score = 66.4 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 22/193 (11%) Query: 512 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV--- 568 + +T +++ + ++ K R I ++QA P + E ++ ++ D Sbjct: 251 QAVTVKVL--SFDRDKKGRPRISLSIKQAGPDPWDTVGEKFAAGDRVEGKVTRLADFGAF 308 Query: 569 --IGKGGSVIRALTEETGTT--------IEIEDDGTVKIAATDGEKAKHAIRRIE----- 613 I G + ++E + + + TV + D K + ++ E Sbjct: 309 VEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKRRISLSLKEVAGDP 368 Query: 614 --EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 ++ +G G V +G F+ + G GL+ S++ D + + G Sbjct: 369 WAAVSDTFAIGSTVEGTVENRQQYGLFINLAPGVTGLLPASKLRDALEPAPYEKVSSGDT 428 Query: 672 VPVKVLEVDRQGR 684 V V V E+D + R Sbjct: 429 VSVVVSEIDTEKR 441 >UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thermosipho africanus TCF52B RepID=B7IE33_THEAB Length = 811 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 12/156 (7%) Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRI 612 P K++DV+ +G SV + I+ E+ + + Sbjct: 481 PNSEVSYDTSLKVEDVLSEGQSVKLYI-----KKIDKENRKILLSLK------ELMPDPW 529 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 + +T + +VG + +GKV I+ +G +V + G +GLVHI I R K++D + +G V Sbjct: 530 QNVTKKYKVGDIVSGKVKNILSYGFYVNLEPGVDGLVHIDDIFWGRRGKISDIVSVGDIV 589 Query: 673 PVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAA 707 V + E+D ++RLS KE + P Sbjct: 590 KVMIKEIDPNNKKMRLSYKEVEGDPWENIEEKYPVG 625 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 592 DGTVKIAATDGEKAKHAIRR-----IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 +K + +K + + + E I + VG TG V+ I+D G V I G Sbjct: 590 KVMIKEIDPNNKKMRLSYKEVEGDPWENIEEKYPVGNTITGTVSFILDKGVIVEIERGIS 649 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAP 705 G IS+I+ + V D L GQ+V + E+D++ R +RLSIK E Sbjct: 650 GFCPISEISWNYISSVKDVLNEGQKVKAVITELDKENRKMRLSIKRVQENPWKKFKDNHK 709 Query: 706 AAE 708 + Sbjct: 710 IGD 712 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 610 RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMG 669 + E+ E + G + G V +I FGAFV I G +GL+ S+++ KV D L G Sbjct: 441 EQKEKFFNERKEGDIIEGIVKKIEKFGAFVRIFEGIDGLLPNSEVSYDTSLKVEDVLSEG 500 Query: 670 QEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAPAAE 708 Q V + + ++D++ R I LS+KE + + Sbjct: 501 QSVKLYIKKIDKENRKILLSLKELMPDPWQNVTKKYKVGD 540 Score = 49.4 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 25/181 (13%) Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL I IS F P +KDV+ +G V +TE ++ Sbjct: 634 FILDK--GVIVEIERGISGFCPISEISWNYISSVKDVLNEGQKVKAVITE-------LDK 684 Query: 592 DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 + + + ++ ++G + KV + + G +V E + Sbjct: 685 ENRKMRLSI----KRVQENPWKKFKDNHKIGDIVAVKVIKELKSG-YVGACENVEIYLPK 739 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG---RIRLSIKEATEQSQPAAAPEAPAAE 708 S V + +G E+ VK++++ G RI S KE + + E E Sbjct: 740 S--------HVLKEITLGDELKVKIIQIKEDGEILRITASEKELENEKVIDSLKEEFENE 791 Query: 709 Q 709 + Sbjct: 792 R 792 >UniRef50_Q1WSG8 S1-type RNA-binding domain n=18 Tax=Firmicutes RepID=Q1WSG8_LACS1 Length = 154 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 55/80 (68%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG +GKV+ I DFGAFV +G K GLVHIS++++ V+ + + L +G EV VKVL Sbjct: 3 IEVGAKLSGKVSGITDFGAFVDLGDKKTGLVHISEVSNTFVKDIHEVLSVGDEVTVKVLS 62 Query: 679 VDRQGRIRLSIKEATEQSQP 698 V G+I LSIK+A ++ Q Sbjct: 63 VSDDGKIGLSIKKAVDKPQK 82 >UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=A7G2Q4_CLOBH Length = 387 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 I +I+ +KD+ G +++ G IE++ + ++ K + +R EE Sbjct: 137 IPASQIDNKYVKDLNVFKGEMVK------GRLIELDKQKRKIVLSSRVVKEEEEAKRKEE 190 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +E G+ G V R+ FGAFV IG G +GLVH SQ++ RV ++ + +G +V V Sbjct: 191 LLNSLEKGQKIEGVVRRLEKFGAFVDIG-GMDGLVHNSQLSWGRVNHPSEVVSIGDKVEV 249 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 VL+ D+ +I LS+K+ + + E Sbjct: 250 YVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIE 287 Score = 116 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D V + D + K A+ + + VG V G + ++++FGAFV Sbjct: 241 VSIGDKVEVYVLDFDKDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFV 300 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 + G EGLVHIS+I D+ + K ++ L +G +V VKVLEV+ + R+ LSIKEATE+ + Sbjct: 301 EVENGIEGLVHISEITDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKE 360 Query: 699 AAAPEAPAAEQG 710 + + E+ Sbjct: 361 DFSKYDDSKEED 372 >UniRef50_C5RED5 RNA binding S1 domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RED5_CLOCL Length = 308 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 12/165 (7%) Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P + I + K V L E D+ V ++A + E+ + Sbjct: 133 VRAFIPASQLSMSYVEDISAFVNKVLKV--KLIELNK------DNRRVILSAKEVERDEL 184 Query: 608 AIRR---IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + E I + VG + KV +++ FGA V + G EGLVH SQI+D RV D Sbjct: 185 SKKMDNLWESIDDKYRVGDIVETKVVKLLKFGAIVKLEEGVEGLVHNSQISDDRVMNPGD 244 Query: 665 YLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 YL+ GQ++ VK+L +D+ Q +I LS KEA + Q + E Sbjct: 245 YLKEGQDIKVKILTIDKVQKKISLSYKEAVAKEQSTEFRKYAKNE 289 Score = 50.2 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 TD K + +I+ I G++ G+V + + V+IG K+G++ + Sbjct: 2 TDNNSMKDFMDQIDNSMKRIVKGQMVEGEVVSVTEEDVLVSIGHMKDGIIPKEKATFDMS 61 Query: 660 EKVTDYLQMGQEVPVKV-LEVDRQGRIRLSIKEATEQS 696 + + + +G + V +E D +G+I LS + +S Sbjct: 62 KSLKEQFNLGDIIKAYVEVEDDGEGKILLSKVKLDRES 99 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G +I+A E +EDDG KI + + + + +E+ ++ V Sbjct: 71 GDIIKAYVE-------VEDDGEGKILLSKVKLDRESS--WDELQRLHNTQEIFEVTVKEA 121 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKE 691 V GA + G + SQ++ VE ++ ++ + + VK++E+++ R+ LS KE Sbjct: 122 VKGGATTELY-GVRAFIPASQLSMSYVEDISAFVN--KVLKVKLIELNKDNRRVILSAKE 178 Query: 692 ATEQS 696 Sbjct: 179 VERDE 183 >UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglomus RepID=B5YEY5_DICT6 Length = 552 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 22/204 (10%) Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAP-----RIHTIKIN---PDKIKDVIG--KGG 573 ++ A+L I +QA P E P + IKI+ K+ ++IG Sbjct: 252 ENSRTAQLSI----KQAQPNPWSLFKEKYPEGSIIKAEIIKISGGIVVKVDNLIGYVPMS 307 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYT 626 + ++ ++++ D K+ + D K E I ++G + + Sbjct: 308 EISWGRPQDVKNSLKVGDKVKAKVLSVDDLNQKIFLSIKQVEPNPWEVIDQNYKIGEIVS 367 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RI 685 GKVT I DFG F+ I G EGL+ I+ +R+ ++D + G + K++E+D++ ++ Sbjct: 368 GKVTNITDFGIFIEIKPGLEGLIPRKLISWERISNISDIFKPGDFIEAKIIEIDKENKKL 427 Query: 686 RLSIKEATEQSQPAAAPEAPAAEQ 709 LS ++ + + + Sbjct: 428 TLSRRDLLKDPWEDIDEKYREGQN 451 Score = 74.8 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTI 587 R IL + ++ F P I + P K I E I Sbjct: 116 NGRGFILEI--------NNEVEGFIPAKE-IDVPPIK------PPKYYINRRIEGKIKRI 160 Query: 588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 E + + A E+ + R + +I+ ++ G++ ++ + V +G G G Sbjct: 161 NPEKNQLIISARELLEQKQEEER--SNLWEKIKNSQIVRGRIIKVDEDKLTVDLGLGIIG 218 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIR-LSIKEATEQSQPAAAPEAPA 706 +V +I+ ++ + Y G V +VL +D R LSIK+A + P Sbjct: 219 IVEKDEISWFPIKNIRRYYNTGDIVKARVLSLDENSRTAQLSIKQAQPNPWSLFKEKYPE 278 Query: 707 A 707 Sbjct: 279 G 279 Score = 67.5 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 13/154 (8%) Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 PR I D+ G + + E I+ E+ + Sbjct: 390 IPRKLISWERISNISDIFKPGDFIEAKIIE-----IDKENKKLTLS------RRDLLKDP 438 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E+I + G+ G++ + G V + G EG + +QI ++ ++ + +E Sbjct: 439 WEDIDEKYREGQNIKGRIIEKLKDGYIVELEPGIEGFLPYTQINFEKENEIQG-FKENEE 497 Query: 672 VPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 V K+++++ + RI LSIK ++ + Sbjct: 498 VEAKIVKINPRFRRITLSIKALIKEKLDQEMKKY 531 >UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD Length = 258 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 24/244 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R D R + IR + + + GS L G T+ +VTAT+ D +V G Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56 Query: 374 DTFLFHYNFPPYSVGETGMVG----SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y+ P + + + R RL R + A + + + Sbjct: 57 GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116 Query: 430 EITESNGSSSMASVCGASLALMDA-----------GVPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ G +A+ DA P+ VA +++G+ + + Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVE----M 172 Query: 479 SDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ +ED +D + + G +Q + + E Q L K I+ V Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQ 232 Query: 538 EQAI 541 ++ + Sbjct: 233 KEVL 236 >UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH71_THEYD Length = 534 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 8/131 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 EI + + D E + E I + G GKVTR+ DFG FV Sbjct: 248 FEIGSEYEFIVLKADTENERITLGYKQKKADPWENIDKKYHPGMKVRGKVTRVEDFGLFV 307 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQP 698 + G EGLVH+S++ + T Y ++ + + VKVL++DR+ R I LS K+ + Sbjct: 308 ELEEGVEGLVHVSELDWIAPKHPTYYAEVDEWINVKVLDIDRENRKISLSFKQLKPKPWE 367 Query: 699 AAAPEAPAAEQ 709 A + ++ Sbjct: 368 VVAKKYKVGDR 378 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 588 EIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 E+++ VK+ D E K + E + + +VG +GKV I DFG FV Sbjct: 335 EVDEWINVKVLDIDRENRKISLSFKQLKPKPWEVVAKKYKVGDRISGKVKTITDFGIFVR 394 Query: 641 IGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G +GL+HIS I+ K ++ + + GQ+V +L ++ + ++ L IK+ +E Sbjct: 395 LPEGVDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEKEKLSLGIKQLSEDPWI 454 Query: 699 AAAPEA 704 PE Sbjct: 455 KEIPEK 460 Score = 97.6 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 3/210 (1%) Query: 500 DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIK 559 GI +L D ++ EI+ A +A + I G + + I+ F P Sbjct: 82 QGIISLSRDRALKIKGWEILMDAYEKALPVEVKITGKTKGGVLTSFYGINGFIPASLLEI 141 Query: 560 INPDKIKDVIGKGGSV-IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE 618 P + + +GK V I + + + T I + + + +EI+ + Sbjct: 142 RKPKNLDEYVGKTFKVKIEKIEPPKNLYGQWRNLKTSLILSRKAYLQEEKEKMKKEISEK 201 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 I+ G G V I ++G FV +G G +G +HIS I+ +V + + ++G E VL+ Sbjct: 202 IKEGLKIKGTVKNITNYGVFVDLG-GLDGFLHISDISWGKVRHPSQFFEIGSEYEFIVLK 260 Query: 679 VDRQG-RIRLSIKEATEQSQPAAAPEAPAA 707 D + RI L K+ + Sbjct: 261 ADTENERITLGYKQKKADPWENIDKKYHPG 290 Score = 88.7 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 13/113 (11%) Query: 592 DGTVKIAATDGEKAKHAIRR------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK 645 D + + EK I++ I+EI + ++G +Y KV + + G FV I G Sbjct: 428 DAVILSLEPEKEKLSLGIKQLSEDPWIKEIPEKFKIGEIYNAKVIKKTEHGLFVDIEGIV 487 Query: 646 EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQ 697 EGLV+ S+I R ++ G E+ V V++VD++ R I LS+K+ E + Sbjct: 488 EGLVYNSEIDKNRT------VKEGDEIKVIVVKVDKEKRKIGLSMKKIDENEE 534 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E + IE G + GK+ + + G V +G EG++ +++ +++ ++ + + E+ Sbjct: 16 EGSLSHIERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEELKNIKEA----DEI 71 Query: 673 PVKVLEVDR-QGRIRLSI-KEATEQSQPAAAPEAPAA 707 V + ++D QG I LS + + A Sbjct: 72 EVFIEKIDDAQGIISLSRDRALKIKGWEILMDAYEKA 108 >UniRef50_A2FJA8 S1 RNA binding domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2FJA8_TRIVA Length = 125 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 36/75 (48%), Positives = 52/75 (69%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++ G + G VT++ FGAFV + GK GLVHIS+IAD V+ + +++ G EV VKVL Sbjct: 2 DLSPGDIVEGVVTKVAKFGAFVDLKDGKSGLVHISEIADTFVKNINNHISEGDEVKVKVL 61 Query: 678 EVDRQGRIRLSIKEA 692 +D +G+I LSIK+A Sbjct: 62 SIDERGKIALSIKDA 76 >UniRef50_A8ZTZ3 RNA binding S1 domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTZ3_DESOH Length = 492 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%) Query: 588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 IE G + + + E+ A+ G + G+V RI+ +GAF+ + G EG Sbjct: 174 RIEARGKNLVVNRRRLLEQEQAEQREKFLAQARPGDIVDGRVVRIMPYGAFMELQPGVEG 233 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG------RIRLSIKEATEQSQPAAA 701 +VHIS+++ RV ++ +G+ +PV++L +DR G +I LS K+A Sbjct: 234 MVHISELSWSRVGDPSEVTAVGEVLPVRILAIDRTGSKTGGLKISLSAKQAAVDPWKTVG 293 Query: 702 PEAPAAEQGE 711 + ++ E Sbjct: 294 EKYKEGDKIE 303 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKV 662 + A+ + + + + G GKVTR DFGAFV + G EGLVHIS+++ +RV K Sbjct: 281 AKQAAVDPWKTVGEKYKEGDKIEGKVTRCADFGAFVEVEPGIEGLVHISEMSHTRRVVKA 340 Query: 663 TDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 D + G V V V VD R+ LSIK A A + Sbjct: 341 EDVARPGDRVAVMVTSVDPVNRRLSLSIKAAEGDPWLTVANRMAVGQ 387 Score = 61.7 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT--DYLQMGQE 671 + + VG+ +G V R++DFG F+++ G GL+ S + +R + L+ Sbjct: 378 TVANRMAVGQTVSGTVERVLDFGCFISLAPGVTGLMPRS--SMERAADPKAMEKLKADDP 435 Query: 672 VPVKVLEVD-RQGRIRL 687 V VK+ ++ +I L Sbjct: 436 VTVKIETINLADKKISL 452 >UniRef50_A6CB07 30S ribosomal protein S1 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CB07_9PLAN Length = 572 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 8/138 (5%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVY 625 G + + + VKI D EK + + + G Sbjct: 396 GEISWNRIKHPKDALSEHQQINVKILKIDKEKNRISLGMKQLQQDPWQSAEDRYATGSTI 455 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGR 684 +GKVTR DFGAF+ + G EGL+HIS++ +RV++VT+ L GQE KVLEVD + R Sbjct: 456 SGKVTRTTDFGAFIELEPGLEGLIHISELDHRRVKRVTEVLTTGQETSAKVLEVDPNRKR 515 Query: 685 IRLSIKEATEQSQPAAAP 702 I LSIK ++ + A AP Sbjct: 516 ISLSIKALIDKPEAAEAP 533 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 2/96 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E+ ++ +G+ +TG V I D+GAFV +G G +G +HI +I+ R++ D L Q++ Sbjct: 358 KELWEKLAIGQEHTGTVKNIKDYGAFVDLG-GIDGFLHIGEISWNRIKHPKDALSEHQQI 416 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAA 707 VK+L++D++ RI L +K+ + +A Sbjct: 417 NVKILKIDKEKNRISLGMKQLQQDPWQSAEDRYATG 452 >UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMY1_FIBSS Length = 590 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ + V + + +K + ++I G + GKV I D+GAFV Sbjct: 255 LQLGQEVEVMVLDFNDKKERISLGMKQLKPHPWKDIAERYPEGAIVKGKVVSITDYGAFV 314 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 + G EGL+H+S+++ + V+ + L +GQEV VL+V+ RI L +K+ Sbjct: 315 ELDSGVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEEDAERISLGMKQLESDPW 374 Query: 698 PAAAPEAPAAEQ 709 + E P + Sbjct: 375 DSIETELPPGAR 386 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVA 640 T+ E + V D E+ ++++E I E+ G G++ I FGAFV Sbjct: 343 TVGQEVEAVVLKVEEDAERISLGMKQLESDPWDSIETELPPGARVVGEIRNIASFGAFVE 402 Query: 641 IGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 I G +GL+H+S ++ K++ + ++ G +V VL VD++ RI LS+K TE Sbjct: 403 IKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKEKRRISLSMKHLTEDPWD 462 Query: 699 AAAPEAPAAEQ 709 + P + Sbjct: 463 SIDSTYPVDSE 473 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ +E +V G V I DFGAF+ +G G +GL+HI+ ++ KR+ ++ LQ+GQEV Sbjct: 204 DVLETLEKNQVRKGIVKNITDFGAFIDLG-GVDGLLHITDMSYKRINHPSEMLQLGQEVE 262 Query: 674 VKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAPAA 707 V VL+ D++ RI L +K+ A P Sbjct: 263 VMVLDFNDKKERISLGMKQLKPHPWKDIAERYPEG 297 Score = 79.1 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D + A D EK + ++ + I + V GK+ R++D G V Sbjct: 429 VKKGDKVECVVLAVDKEKRRISLSMKHLTEDPWDSIDSTYPVDSEVKGKIVRMLDRGVVV 488 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQP 698 + G EG + +S++ + ++ D ++G EVP V E+D+ R I LS+ + + + Sbjct: 489 ELADGIEGFIPVSKLTAEYIKVPADAFKVGDEVPAVVTEIDQNNRKIYLSVVDYFKNRES 548 Query: 699 AAAP 702 A Sbjct: 549 AELK 552 Score = 45.9 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 590 EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV 649 ++DG + ++ + + + I A E V G +T+ + G V + G + + Sbjct: 97 DEDGRLILSKQKADFVRV----WDRIHAAFENNEVVRGTLTKRIKGGVVVDLF-GIDAFL 151 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAA 701 SQI +++ + +GQE +KV++V++ R I +S + E+ + Sbjct: 152 PGSQIDLRQIPDINAL--IGQEFDLKVIKVNKARRNIVVSRRVVLEEERNKQR 202 >UniRef50_B0MBX8 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=B0MBX8_9FIRM Length = 309 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAK-HAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 L +E I D+ K+ + E K A + A + G V G V I+ +GA Sbjct: 162 LKKEVEAKIITVDESRNKLVLSAKEVEKAKAQEELNHKMAMMRPGMVLEGTVENIMPYGA 221 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 FV +G G GL+HISQ ++KR++ + ++ GQ+V VKVL++ +I LS+K E + Sbjct: 222 FVDLGDGLSGLIHISQFSEKRIKSPKEMVEEGQKVKVKVLKI-ADNKISLSMKALEESRE 280 Query: 698 PAAAP---EAPAAEQGE 711 E E+ + Sbjct: 281 AEKVETGIEYKEEEKAQ 297 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 G +K+A E + +E +++ G + G V + D A + + +G++ Sbjct: 1 MKGDLKMAEEMKETMEQYENELEASFRKMDEGDIVEGDVLSVSDEEAVIDLKYYAQGILK 60 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 694 S+ +D +T+ L G V KV+ VD +G I LS +EA + Sbjct: 61 ASEYSDDPNVTLTEALNEGDRVKAKVISVDDGEGNIVLSKREANQ 105 >UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 Length = 247 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 24/237 (10%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 ++ R + R D IR + + G GSAL G T+ L AT V L Sbjct: 6 IICSVLRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATF----QRGVPPFL 61 Query: 369 MGERTDTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 G+R+ Y P S E G R RL R + A++ T Sbjct: 62 RGQRSGWITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENT 121 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGV-----------PIKAAVAGIAMGLVKEGD 473 + + ++ +++G + A++ G+ +AL DA V P+ +V+ +++GLV + Sbjct: 122 IILDCDVLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGD-- 179 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGA 529 + D+ ED D + + G + +Q + + + + AK Sbjct: 180 --QIFLDLDYSEDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTG 234 Score = 54.8 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 62/235 (26%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP------LTVNY----------QERTYAA 70 A + +++ +T V Q+ P F +T Y +R Sbjct: 34 AEGSALIAFGNTRVLCNATFQRGVPP---FLRGQRSGWITAEYAMLPRSGTERSDRESVK 90 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSVNPQVNPDI 128 G+I G E +RLI R +R + + E +I V+ + Sbjct: 91 GKISG---------RSHEI--SRLIGRSMRAILDRYALEENTIILDCDVLQADGGTRT-- 137 Query: 129 VAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQYVLNPTQDE--LKESKL 175 A+ G+ AL LS P + A VG + DQ L+ E ++ + Sbjct: 138 AAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSEDSNAQADI 197 Query: 176 DLVVAGTEAAVLMVESEAQLLS------EDQMLGAVVFGHEQQQVVIQNINELVK 224 +LV G+ ++ ++ A+ E M E + Q + E+ Sbjct: 198 NLVFTGS-GKLVEIQGTAEKSPFSYGQFEQMM--------ELAKTGCQALKEIQA 243 >UniRef50_A8Z6B9 Putative ribosomal protein S1 n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=A8Z6B9_SULMW Length = 614 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K+ ++ ++ +++E G+V G V I +G+F+ IGGG +GL HI+ I+ +R+E ++ Sbjct: 220 KYIEKKKRKLISKLEKGQVLRGIVKNITHYGSFIDIGGGIDGLCHITDISWERIEHPSEK 279 Query: 666 LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 L++GQ + +L +D+ + R++L +K+ + E + Sbjct: 280 LEIGQTINFVILSIDKIKNRVQLGLKQLQSNPWNSLEEEIKKGK 323 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVT 630 E +EI I + D K + + EI+ G+V G VT Sbjct: 271 ERIEHPSEKLEIGQTINFVILSIDKIKNRVQLGLKQLQSNPWNSLEEEIKKGKVVIGTVT 330 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT---DYLQMGQEVPVKVLEVD-RQGRIR 686 + D+GAFV I G EGLVH+S+++ + +K+ ++++G ++ V +L D ++ Sbjct: 331 VVTDYGAFVEIFPGVEGLVHVSEMSWSKTKKLRSSQSFVKIGDKIKVLILNYDISDQKMS 390 Query: 687 LSIKEATEQSQPAAAPEAPAA 707 LS+K T + Sbjct: 391 LSLKRLTPDPWENIEKKYKIG 411 >UniRef50_C1ECK5 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1ECK5_9CHLO Length = 2018 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 37/208 (17%) Query: 493 FKVAGSRDGISA---LQMDIKIEGITKEIMQ----VALNQAKGARLHILGVMEQAINAPR 545 K GS +GIS+ L + G K++ + VA++++ AR+ + + + ++ P Sbjct: 1371 LKSKGSSNGISSVSQLAPGAHVSGFVKQVNKGGCFVAISRSVDARVKMCNLADTFVSDPA 1430 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 + P+ +K + + G+ +R +DG A Sbjct: 1431 QEF----PKGKLVKGTILSVDESSGRAEMTLR----------------------SDGMDA 1464 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEK-VT 663 +I+ A +E G V G V R+ +G FV + G G+ GL HIS AD R++ + Sbjct: 1465 AAGRSQIDN-NAHVEEGSVQMGTVRRVQTYGVFVTLDGSGRSGLCHISMFADARIKDSLE 1523 Query: 664 DYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 +++ G+ V VKVL+VD + G+I L +K Sbjct: 1524 QHVRAGERVRVKVLQVDEETGKISLGMK 1551 Score = 65.2 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 2/127 (1%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G I AL + + + + + A D + K + + G G V++I Sbjct: 1248 GDSIAALRKALTSRFTVGERVKMTALAADVARKKIIVTLRSADKRNVVEGAKIAGIVSKI 1307 Query: 633 VDFG--AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 G FV + + G VH++ IAD + +G+ V V+VL V G + LS+K Sbjct: 1308 APGGGGVFVQLNSRQHGRVHVTDIADDPRSEPWKLHSVGEAVEVRVLGVGEGGEVDLSMK 1367 Query: 691 EATEQSQ 697 + +S+ Sbjct: 1368 SSALKSK 1374 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%) Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 P G + + AP + + P+ I D+ G+ T ++ ++ + D Sbjct: 503 EPYGAVVKLAPGVKALC-PPNHISDIPGR----------VTNAKVKEGLSAKFRVVSVDR 551 Query: 603 EKAKHAIRRIEEIT----------AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 K + + +++ + G G VT + +G FV + G GL + Sbjct: 552 VKGRAVVTHKKQLIRSELPVVASLDDATPGTTTHGVVTGVEPYGVFVQLYGNLRGLAGLQ 611 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSI 689 + + + +GQ V V+ DR + +I+LS+ Sbjct: 612 DLGLAADQTPQEAFAVGQVVRATVIRSDRGEQKIKLSL 649 Score = 52.5 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLV---HISQIADKRVEKVTDYLQMGQEV 672 E+ G G+V + +GA V + G + L HIS I RV ++ G Sbjct: 486 LEELVPGMQVRGEVVAVEPYGAVVKLAPGVKALCPPNHISDI-PGRVTNAK--VKEGLSA 542 Query: 673 PVKVLEVDR-QGR 684 +V+ VDR +GR Sbjct: 543 KFRVVSVDRVKGR 555 Score = 49.0 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%) Query: 616 TAEIEVGRVYTGKVTR-IVDFGAFVAIGGGKEGLVHISQIADKRVE---KVTDYLQMGQE 671 + + VG +Y G V + G FV G GL SQ+ D V + +GQ Sbjct: 766 ISGVVVGAIYPGYVASATANAGVFVRFLGRLTGLAPPSQLTDVPVAGGVDPEEMFALGQT 825 Query: 672 VPVKVLEVD---RQGRIRLSIKEATEQSQPAAAPEAP 705 V +V+ VD R+ LS+ + EAP Sbjct: 826 VLARVVSVDATVEPPRLSLSLAPRGVAASSGVTAEAP 862 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 35/190 (18%) Query: 508 DIKIEGITKEI------MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKIN 561 KI GI +I + V LN + R+H+ + + + P ++H++ Sbjct: 1297 GAKIAGIVSKIAPGGGGVFVQLNSRQHGRVHVTDIADDPRSEPW--------KLHSVGEA 1348 Query: 562 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEV 621 + +G+GG V D ++K +A K+K + I + +++ Sbjct: 1349 VEVRVLGVGEGGEV----------------DLSMKSSAL---KSKGSSNGISSV-SQLAP 1388 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G +G V ++ G FVAI + V + +AD V G+ V +L VD Sbjct: 1389 GAHVSGFVKQVNKGGCFVAISRSVDARVKMCNLADTFVSDPAQEFPKGKLVKGTILSVDE 1448 Query: 682 -QGRIRLSIK 690 GR ++++ Sbjct: 1449 SSGRAEMTLR 1458 Score = 42.1 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 619 IEVGRVYTGKVTRIVDF--GAFVAIGGGKE------GLVHISQIADKRVEKVTDYLQMGQ 670 + G ++ V R VD G + + E G HIS AD+ ++K+ ++G+ Sbjct: 395 PKPGTIFETAVVRRVDTAIGVLLELKSENENVHPTFGYCHISDAADEHLDKLEKRFKVGK 454 Query: 671 EVPVKVLE 678 +V +V+ Sbjct: 455 KVRARVIG 462 >UniRef50_A9AV75 RNA binding S1 domain protein n=5 Tax=Chloroflexi (class) RepID=A9AV75_HERA2 Length = 415 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IEI I + + R +++ ++E G V TG+VT + DFGAFV IG G + Sbjct: 199 IEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIG-GAD 257 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAP 705 GLVH+S+++ RV+ + L++G V V +L VD + RI LSIK + Sbjct: 258 GLVHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQ 317 Query: 706 AAE 708 + Sbjct: 318 IGQ 320 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 8/112 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D +V I + D +K + A +T ++G+ +G VT++ FGAFV Sbjct: 277 LKVGDAVSVYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQIGQSVSGVVTQLTAFGAFV 336 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 690 + G EGL+HIS+++D+R++ D + G V +++ +D + RI LS + Sbjct: 337 RLEDGIEGLIHISEMSDERIQHPRDVINEGDSVSARIIRIDPTRKRIGLSTR 388 Score = 46.7 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 ++ G G + R+ V IG EG+V ++ E+ L++G + V V Sbjct: 49 RNLKYGDSVDGTIVRVDRDEVLVDIGSKSEGVVPGREMTSLSSEE-RAELKVGDVLLVTV 107 Query: 677 LEV-DRQGRIRLSI-KEATEQSQPAAAPEAPAAE 708 ++ D +GRI LSI K E+S A A + Sbjct: 108 VQTEDAEGRIVLSIDKARQEKSWRALQVNHEAGD 141 >UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae RepID=Q1MQB8_LAWIP Length = 574 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + + +K+ + D E K + ++IT + GKVT +VD+G FV Sbjct: 250 VNLGQELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSHHVGKVTNLVDYGVFV 309 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 + G EGLVHIS+++ R + + + G EV V +L +D+ + RI L +K+ Sbjct: 310 ELESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNPW 369 Query: 698 PAAAPEAPAAEQGE 711 + P E Sbjct: 370 ELVGEKYPEGTILE 383 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + + +++ I G+V GKV + ++G FV +G G +GL+HI+ ++ KR+ + Sbjct: 191 EERDSKRQDLLQTISEGQVVVGKVKNVTEYGVFVDLG-GLDGLLHITDMSWKRIRHPREM 249 Query: 666 LQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 + +GQE+ +KVL D++ ++ L +K+ P Sbjct: 250 VNLGQELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSH 294 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + D+ V I D +K + E + + G + G V I +FG F+ Sbjct: 337 VHQGDEVEVVILGIDQDKKRISLGMKQVKPNPWELVGEKYPEGTILEGVVKNITEFGMFI 396 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 I G +GL+H+S I+ K+V + ++G V KVL VD++ + L IK+ TE Sbjct: 397 GIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQENEKFTLGIKQLTEDPW 456 Query: 698 PAAAPEAPAA 707 A P Sbjct: 457 SNAPSVYPVG 466 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 8/128 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ D K+ D E K + VG + G +T I DFG FV Sbjct: 424 FKVGDTVQAKVLTVDQENEKFTLGIKQLTEDPWSNAPSVYPVGGIVKGIITNITDFGLFV 483 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 + G EGLVH+S+++ K+++ ++ + G+E+ K++ V + R+ LSIK+ E + Sbjct: 484 EVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKIIHVSAEERRLGLSIKQLKEDEEH 543 Query: 699 AAAPEAPA 706 + E Sbjct: 544 RKSREYSR 551 >UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDA5_9CHLO Length = 261 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 12/232 (5%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R+DGR R + LP + GSA+F G T+ L G + + L E Sbjct: 7 EGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAV-HGPHECRRPSERL--E 63 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSE 430 + +S GE RR +R + + + + + V + Sbjct: 64 DRLLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCV-SAELLARSQLDVSIQ 122 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + +++G A+V A LA++DAG+P++ +A + G + + L D+ E+ G Sbjct: 123 VLQADGGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDD----TPLLDLNYMEEGGGG 178 Query: 491 MD--FKVAGSRDGISALQMDIKIE-GITKEIMQVALNQAKGARLHILGVMEQ 539 + D + A+ + K + + ++AL+ + A + M + Sbjct: 179 PEVHVAYMPQMDRVVAIVTENKASVDVFERAHELALDGCRVASKLMRERMIE 230 >UniRef50_A8MK30 RNA binding S1 domain protein n=32 Tax=Firmicutes RepID=A8MK30_ALKOO Length = 142 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 39/87 (44%), Positives = 56/87 (64%) Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +VG + G V+ I +FGAF+ +G GK GLVHIS++AD V+ + DYL+ Q+V VKVL + Sbjct: 4 QVGAILDGTVSGITNFGAFIDLGEGKTGLVHISEVADDYVKNIHDYLKTQQKVKVKVLSI 63 Query: 680 DRQGRIRLSIKEATEQSQPAAAPEAPA 706 + G+I LSIK+A + P A Sbjct: 64 EDNGKISLSIKQAALPKKKTVKPPASV 90 >UniRef50_C5NX49 30S ribosomal protein S1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NX49_9BACL Length = 402 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 47/128 (36%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYT 626 + A E+ + + D V + A D E K ++ + E A I+ G Sbjct: 238 EISHARVEKVADVLSVGDTIKVAVIAVDKENEKVSLSAKTLLPTQWEVARATIKAGDALE 297 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRI 685 G V FGAFV + EGLVHISQI+ +RV V D L+ G +V VKVLE D R+ Sbjct: 298 GVVRNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNVKVLEFDFENERL 357 Query: 686 RLSIKEAT 693 LSIKE Sbjct: 358 SLSIKELL 365 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 13/135 (9%) Query: 589 IEDDGTVKIAATDGEKAK-----------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 + ++ T KI D K K +++ E+ I G V GKV+RI DFGA Sbjct: 164 VGNEYTFKIEEVDKSKNKIILNRRVILEEEKAKKLAEVYGNINEGDVIEGKVSRITDFGA 223 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQS 696 FV IG +GL+HIS+I+ RVEKV D L +G + V V+ VD++ ++ LS K Sbjct: 224 FVNIGE-VDGLLHISEISHARVEKVADVLSVGDTIKVAVIAVDKENEKVSLSAKTLLPTQ 282 Query: 697 QPAAAPEAPAAEQGE 711 A A + E Sbjct: 283 WEVARATIKAGDALE 297 Score = 45.9 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 18/122 (14%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVT 663 + + + ++ G TG V++I + +V + G + + ++ +QI K E + Sbjct: 1 MTTSFEELLNSSEMLKKGDKVTGTVSKIDNDKVYVDVAGAQYDCVILRNQITRKPFENIE 60 Query: 664 DYLQMGQEVPVKVLEV--DRQGR-------IRLS--------IKEATEQSQPAAAPEAPA 706 D L +G EV +V + DR+ R I LS K+ E S + Sbjct: 61 DVLSVGDEVEAQVTGIRADREKRSEDVPGVIYLSHKILENAEYKKLMELSWAGIIEKFEN 120 Query: 707 AE 708 E Sbjct: 121 GE 122 >UniRef50_A4ISC1 Polyribonucleotide nucleotidyltransferase, general stress protein 13 n=5 Tax=Geobacillus RepID=A4ISC1_GEOTN Length = 124 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 ++ G + GKVT I +GAFV + GG +GL+HIS+I+ + V+ V DY+ +G EV VKVL+ Sbjct: 7 MKRGAIVKGKVTGIQPYGAFVQLEGGMQGLIHISEISHRFVKNVRDYVHVGDEVTVKVLD 66 Query: 679 VD-RQGRIRLSIKEATEQSQPAAAP 702 VD + GR LS+K + Sbjct: 67 VDYKAGRASLSLKALEPGREKQKRQ 91 >UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30ZT8_DESDG Length = 482 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 18/287 (6%) Query: 438 SSMASVCGASLALMDA---GVPIKAAV-AGIAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 S A G+++AL +A GVP++ V A G E + + + Sbjct: 93 SRSAGSAGSAMALTEAFENGVPVEGKVTAQCKGGFNVEVMQRRAFCPVSQIDSRFVENPE 152 Query: 494 KVAGSRDG--ISALQMDIKIEGITKEIMQVAL-NQAKGARLHIL---GVMEQAINA--PR 545 + G I+ + + + +++ ++ A +++ + L V++ I Sbjct: 153 EYLGQTFQFMITRCENNGRNVVVSRRVLLEAQQEESRKEYMKTLNEGDVVDVCITRLTNF 212 Query: 546 GDISEFAPRIH-TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 G +E AP + I I+ V +V + T ++ + T K Sbjct: 213 GAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKV---LKIESTAKGLRIALSA 269 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVT 663 + + + G V GKV R FGAFV + G EGLVHIS+++ +R+ K Sbjct: 270 KQVMEDPWNTVADRLAAGTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAE 329 Query: 664 DYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 D + G V VK+ ++D + RI LS++EA AA + + Sbjct: 330 DVVIPGDTVSVKIKDIDSAKRRISLSLREAEGDPWDGAAEKFAPGTE 376 Score = 97.9 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E + G V +TR+ +FGAF + G EGL+HIS++ RV+ + + G + Sbjct: 190 KEYMKTLNEGDVVDVCITRLTNFGAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTL 249 Query: 673 PVKVLEVDRQG---RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KVL+++ RI LS K+ E A A E Sbjct: 250 RAKVLKIESTAKGLRIALSAKQVMEDPWNTVADRLAAGTVVE 291 Score = 61.0 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 + I+ D +I+ + E + + G TG V + FG FV Sbjct: 336 DTVSVKIKDIDSAKRRISLSLREAEGDPW---DGAAEKFAPGTEVTGTVEKCAKFGMFVN 392 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ-- 697 I G GL+ S+I+ + + G V + V+E++ + ++ L+ K+A Q Sbjct: 393 IAPGITGLLPQSRISAAPKSGLAG-CKPGDTVTLAVMEINPAERKVTLTTKDAARQEDAE 451 Query: 698 -PAAAPEAPAAEQG 710 PA+ P + QG Sbjct: 452 IPASYRVQPKSSQG 465 >UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BZN7_SCHJA Length = 251 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%) Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R+DGR + +R + + G + G +G T+ + + A Sbjct: 1 GRRVDGRRPNELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVV---GPHAPRTKGDGNPD 56 Query: 373 TDTFLFHYNFPPYSV--GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVS 429 T + + PP++ GE V S R + V+ +K+P + + + Sbjct: 57 GATIICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVV-RTEKYPMSQIDIFL 115 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH-- 487 E+ +S+GS +V +LAL DAG+ + V+ +GL V +D+ E++ Sbjct: 116 EVIQSDGSEFACAVNATTLALTDAGIEMHYLVSAATVGL----WGSRVFADLCRFEENPR 171 Query: 488 LGDMDFKVAGSRDGIS 503 L + +S Sbjct: 172 LSQLTVVCLPDIHQLS 187 >UniRef50_B1LBI3 RNA binding S1 domain protein n=5 Tax=Thermotogaceae RepID=B1LBI3_THESQ Length = 543 Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV-----IGKG----- 572 + K + IL + ++ + P + E P + I + G Sbjct: 241 IELDKEKKNVILSL-KRLMPDPWEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLV 299 Query: 573 -------GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAE 618 G+ ++L E + D V++ D E K + E I Sbjct: 300 PRSEVFWGNTRKSLEE----VVSAGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIEDR 355 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 V V TGKVT I+ GAFV + G EG V +S+I+ KR+++ + L++G++V VK+L+ Sbjct: 356 YNVNNVVTGKVTGIIKQGAFVELEEGVEGFVPVSEISWKRIDEPGEILKIGEKVKVKILK 415 Query: 679 VDRQGR-IRLSIKEATEQSQPAAAPE 703 +D++ R I LSIK E A E Sbjct: 416 IDKENRKITLSIKRTQENPWERALKE 441 Score = 99.9 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 19/164 (11%) Query: 548 ISEFAPRIHTI---KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 + F PR +I+P+ D++ G ++ + E ++ E + Sbjct: 209 VRGFIPRSELSYDTRISPE---DIVKPGQNITAKIIE-----LDKEKKNVILSLK----- 255 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK-VT 663 + E++ + VG+V G+V I FG FV + G EGLV S++ K + Sbjct: 256 -RLMPDPWEKVEEKYPVGKVVNGEVISIHPFGFFVRLEPGVEGLVPRSEVFWGNTRKSLE 314 Query: 664 DYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAPA 706 + + G V V+V+ VD++ R + LS K+A Sbjct: 315 EVVSAGDLVKVEVINVDKENRKLTLSYKKAKGDPWENIEDRYNV 358 Score = 94.5 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + ++IEE +E +VG + G V I + G V I G G + S+++ Sbjct: 168 RRALQDKKIEEFFSEKKVGDIVEGTVKGISNAGVEVEISEGVRGFIPRSELSYDTRISPE 227 Query: 664 DYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAPAAE 708 D ++ GQ + K++E+D++ + + LS+K + P + Sbjct: 228 DIVKPGQNITAKIIELDKEKKNVILSLKRLMPDPWEKVEEKYPVGK 273 Score = 49.8 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 10/98 (10%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E G++ G V D G V GG EG V ++++ ++ + +Y ++G+ + +++ Sbjct: 17 EEFRRGQIVKGVVIGKEDDGVVVDFGGKSEGFVPVNEL----IKSLDEY-KVGENLTLQI 71 Query: 677 LEVDRQGRIRLS-----IKEATEQSQPAAAPEAPAAEQ 709 L ++ + R LS +++ E+ + + P + Sbjct: 72 LNLNYEERSILSERRPVLRKTLEELRKDYEEKKPVKAR 109 Score = 48.6 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 20/144 (13%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRI 632 +E G ++I + VKI D E K E E+E + +G + +I Sbjct: 396 IDEPGEILKIGEKVKVKILKIDKENRKITLSIKRTQENPWERALKELETDSIVSGTIKKI 455 Query: 633 VDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ----GRIRL 687 V+ G V + EG V + + G+ + + VL +D GR+ L Sbjct: 456 VNSGVVVEVEEYDLEGFVPN--------NHLLSEPETGKVLNLVVLRIDPDEVLGGRMIL 507 Query: 688 SIKEATEQSQPAAAPEAPAAEQGE 711 S K E+ + E + Sbjct: 508 SEKRYEERKNIEEYKKMVEKESSQ 531 >UniRef50_Q48082 30S ribosomal protein S1 n=129 Tax=Proteobacteria RepID=RS1_HAEIN Length = 549 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 I+++ + + + E++ + G G V + ++GAFV +G G Sbjct: 155 KVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLG-G 213 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPE 703 +GL+HI+ +A KRV+ ++ + +G EV VKVL+ D+ R+ L +K+ + A A Sbjct: 214 VDGLLHITDMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAEN 273 Query: 704 APAAEQ 709 P + Sbjct: 274 HPVNSK 279 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D+ TVK+ D ++ + + I V TGKVT + D+G FV Sbjct: 235 VNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVTNLTDYGCFV 294 Query: 640 AIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 I G EGLVH+S++ + + +G V V VLE+D + RI L +K+ Sbjct: 295 EILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPW 354 Query: 698 PAAAPEAPAAEQ 709 A ++ Sbjct: 355 TQFADTHNKGDK 366 Score = 85.6 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 584 GTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFG 636 + + D V + D E+ + + + G TGK+ I DFG Sbjct: 319 SKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFG 378 Query: 637 AFVAIGGGKEGLVHISQIADKRV--EKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 F+ + GG +GLVH+S I+ E V Y + G EV VL VD + RI L IK+ Sbjct: 379 IFIGLEGGIDGLVHLSDISWSISGEEAVRQY-KKGDEVSAVVLAVDAVKERISLGIKQLE 437 Query: 694 EQS 696 E Sbjct: 438 EDP 440 Score = 52.9 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 18/123 (14%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI--------EVGRVYTGKVTRI 632 EE + D+ + + A D K + ++ I+++ + + G V + V Sbjct: 403 EEAVRQYKKGDEVSAVVLAVDAVKERISLG-IKQLEEDPFNNFVAINKKGAVVSATVVEA 461 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRI-RLSIKE 691 GA V + GG EG + R +T + +G V K VDR+ RI LS+K Sbjct: 462 DAKGAKVELAGGVEGYI--------RSADLTSEVAVGDVVEAKYTGVDRKSRIVHLSVKA 513 Query: 692 ATE 694 + Sbjct: 514 KDQ 516 >UniRef50_Q0TNG2 Ribosomal protein S1 family n=9 Tax=Clostridium perfringens RepID=Q0TNG2_CLOP1 Length = 378 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAE------IEVGRVYTGKVTRIVDFGAFVA 640 + + D+ V ++ D ++ + A+ + I ++VG V +GKVT + GAFV Sbjct: 238 VSVGDEVEVFVSEVDMDRERIALSLKDVIKNPWETLEGLKVGDVVSGKVTNFIKVGAFVE 297 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQSQP 698 + G EGLVHIS+I D+ + K +D L++GQEV VK+L + D ++ LSIK+A E S Sbjct: 298 VLPGIEGLVHISEITDENIAKPSDILELGQEVKVKILNIDDENKKMSLSIKDAVETSNE 356 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 15/139 (10%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE---------ITAEIEVGR 623 G I L E G T+E+ V + K + R I+E + + I+ G Sbjct: 141 GRRIENLEELVGKTLEV----RVIEFNKENRKVVVSRRVIDEEIRNNEKKALWSSIKEGE 196 Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQ 682 GKVTR+ FGAFV IG G EGLVH+S ++ RV K + + +G EV V V EVD + Sbjct: 197 KRKGKVTRLAKFGAFVDIG-GVEGLVHLSDMSWSRVHKPEEVVSVGDEVEVFVSEVDMDR 255 Query: 683 GRIRLSIKEATEQSQPAAA 701 RI LS+K+ + Sbjct: 256 ERIALSLKDVIKNPWETLE 274 Score = 44.4 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 G + GKV + + V IG +G+V ++I++ + + + ++ V Sbjct: 16 LKHFHKGEIVKGKVISVKNDEIIVNIGHFADGVVPRNEISNDKNFDINSI-NVDDDIFVM 74 Query: 676 VLE-VDRQGRIRLSIKEAT 693 VL D +G + LS K A Sbjct: 75 VLSGDDGEGNVLLSKKRAD 93 Score = 44.0 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 13/136 (9%) Query: 586 TIEIEDDGTVKIAATD--------GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 +I ++DD V + + D +K AI+ +++ E + + +V G Sbjct: 64 SINVDDDIFVMVLSGDDGEGNVLLSKKRADAIKVWDDLKEAFEEEKSIKVSLKEVVK-GG 122 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQS 696 V G + SQ A +R+E + + +G+ + V+V+E +++ R + +S + E+ Sbjct: 123 IVGDFNGLRVFMPASQCAGRRIENLEEL--VGKTLEVRVIEFNKENRKVVVSRRVIDEEI 180 Query: 697 QPAAAPE-APAAEQGE 711 + + ++GE Sbjct: 181 RNNEKKALWSSIKEGE 196 >UniRef50_C4G9K7 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G9K7_9FIRM Length = 294 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 23/199 (11%) Query: 522 ALNQAKGAR-------LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 A +Q K A +H+ ++ + A + F P D + D +G+ Sbjct: 84 AWDQLKDAHSANETLTVHVREQVKGGVVAYLKGLRAFIPASQLAASYVDNLADFVGR--- 140 Query: 575 VIRALTEETGTTIEIEDDG--TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 + I+ + + ++A E+ K + + ++ A +EVG + G V R+ Sbjct: 141 -------DLEVKIDSIEPAKRRLVLSARAVEQEKKRLEQQAKLDA-LEVGSIVEGTVARL 192 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK-- 690 DFGAFV I G +GLVHISQI+ KRVEKV D L++GQ+V VK+ + + G++ LS+K Sbjct: 193 KDFGAFVNIADGLDGLVHISQISLKRVEKVEDALRVGQKVRVKITGM-KDGKVSLSMKAV 251 Query: 691 EATEQSQPAAAPEAPAAEQ 709 E E+ AA EQ Sbjct: 252 ELLERPSKEAAARKAQDEQ 270 Score = 44.4 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 + EVG + +V + D V + GK G++ ++++ +L+ G+ + ++ Sbjct: 4 KYEVGDIVNCEVLGVSDHEVSVDLNAGKIGIIAFEDLSEEEGYDPHKHLRNGKHLTAQIT 63 Query: 678 EVDR-QGRIRLSIKEATE-QSQPAAAPEAPAAE 708 +D +G IRLS+ A + A E Sbjct: 64 SLDDGRGNIRLSVNAARHTDAWDQLKDAHSANE 96 >UniRef50_C6E3L9 RNA binding S1 domain protein n=10 Tax=Bacteria RepID=C6E3L9_GEOSM Length = 756 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 4/142 (2%) Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEIT--AEIEVGRVYTGKV 629 G + R +T+ G + +K D + + E++ A+++ G + G V Sbjct: 597 GIRIERYVTDTIGIPTLRDILAELKKPGRDPREQFQSASFREDVVTIADLKEGMILQGVV 656 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 T + FGAFV IG ++GLVH+SQ+ + + D +++GQ V VKVL D + RI LS Sbjct: 657 TNVAAFGAFVDIGVHQDGLVHVSQLTHRFTKDPNDAVKVGQIVKVKVLSADPERKRISLS 716 Query: 689 IKEAT-EQSQPAAAPEAPAAEQ 709 IK+A E++Q A P ++ Sbjct: 717 IKQAEPEKAQKNAEVRKPQPKE 738 >UniRef50_Q1RJH1 30S ribosomal protein S1 n=16 Tax=Alphaproteobacteria RepID=RS1_RICBR Length = 572 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E+ ++I+ G + G V I D+GAF+ +G +GL+H++ I+ RV ++ L+ Q+V Sbjct: 199 DEMLSKIKEGMILEGTVKNITDYGAFIDLGS-VDGLLHLTDISWARVNHPSEVLEFNQKV 257 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQ 709 V V++ + + RI L +K+ E P ++ Sbjct: 258 KVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKK 295 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E V + + E + ++ E+I E VG+ TGKVT D+G F+ Sbjct: 251 LEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFI 310 Query: 640 AIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGLVH S+I+ + L +GQEV VLEVD + R+ LSIK+ + Sbjct: 311 ELKDGLEGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPL 370 Query: 698 PAAAPEAPAA 707 A P Sbjct: 371 IKFAETNPVG 380 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 13/134 (9%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIE-------EITAEIEVGRVYTGKVTRIVDFGA 637 T+ I + + D EK + ++ + + VG V + I DFG Sbjct: 336 KTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLIKFAETNPVGTVIKAPIRNITDFGI 395 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYL---QMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 FVA+ +G++H I + + + L + G EV KVL ++ + +I L IK+ T Sbjct: 396 FVALSDNLDGMIHEGDITWE--DNGNELLKTYKKGDEVECKVLTINIEKEQISLGIKQLT 453 Query: 694 EQSQPAAAPEAPAA 707 A E Sbjct: 454 PNPYQGIADEYKKG 467 Score = 59.8 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 T + D+ K+ + EK + + + I E + G V VT I D G Sbjct: 423 KTYKKGDEVECKVLTINIEKEQISLGIKQLTPNPYQGIADEYKKGTVVKAVVTAIKDDGL 482 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQS 696 V + G + S ++D++ E+ + + QE+ KV +++ +I LSIK Sbjct: 483 EVLVNDKAAGFIKKSDLSDEKEEQKPEMFAVDQEIEAKVASIEKSTNKILLSIKAYKIAE 542 Query: 697 QPAAAPEAPAAEQ 709 + A E +++ Sbjct: 543 RQKALKEYGSSDN 555 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 18/153 (11%) Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 P+ + K+ ++ G ++ E+T + + K + + + + Sbjct: 65 IPKSEFLLSPAHKLPEI----GDLVDVYIEKT-------EGHSGKTLSREKAIKEELWGQ 113 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 +E I ++ G G + V G V + G + SQ+ + ++ + + + Q Sbjct: 114 LELICSK---GEFVDGTIFGRVKGGFTVDL-SGVVAFLPGSQVDVRPIKDPSSIMNIRQP 169 Query: 672 VPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPE 703 K+L +D++ G I +S + E+S+ A E Sbjct: 170 --FKILSMDKKLGNIVVSRRAILEESRSEARDE 200 >UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D0DA55_9RHOB Length = 296 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 24/245 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R GR +R + + TG+ GS L G+TQ + TA+L + +V + G Sbjct: 60 MRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASL----EERVPPFIKGSGL 115 Query: 374 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P S G G R + RL R + A + + + + Sbjct: 116 GWVTAEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDC 175 Query: 430 EITESNGSSSMASVCGASLA-------LMDAG----VPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ G +A LM AG P+ + VA ++ G+ + Sbjct: 176 DVIQADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAG----QPI 231 Query: 479 SDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED +D DG + +QM + ++ M ++ A+ ++ Sbjct: 232 LDLDYPEDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQ 291 Query: 538 EQAIN 542 + A+ Sbjct: 292 KAAVA 296 Score = 62.5 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 35/236 (14%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 TV++ETG + + A + ++ + DT V T +++ P G +T Y Sbjct: 71 RTVSIETG-ITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVTAEY------- 122 Query: 71 GRIP---GSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSVNP 122 G +P GS RRE G+ I RLI R +R + E Q+ V+ + Sbjct: 123 GMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQADG 182 Query: 123 QVNPDIVAMIGASAALSLS--------GI---PFNGPIGAARVGYINDQYVLNPTQDELK 171 ++ G AL L+ + P P+ A G Q +L+ E Sbjct: 183 GTRC--ASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPEDS 240 Query: 172 ES--KLDLVVAGTEAAV-LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK 224 E+ + ++ G + + + +E S QM + + +++ V Sbjct: 241 EAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296 >UniRef50_C1ZHL8 Ribosomal protein S1 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHL8_PLALI Length = 557 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 8/125 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + V + + D EK K VG+ TGKVTRI DFGAF+ Sbjct: 392 VREQQTVDVVVLSLDREKQKIGLGMRQLVQNPWNSAPETYAVGKTVTGKVTRITDFGAFI 451 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQP 698 + G EG++HIS++ KRV++V D L+ GQ+V +VLE+ + RI LS+K + + Sbjct: 452 ELEPGVEGMIHISELDYKRVKRVADVLKEGQQVDAQVLEIQPERQRISLSVKALKPKPEV 511 Query: 699 AAAPE 703 A P+ Sbjct: 512 VAPPK 516 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++EVG+ +TG + I D+GAFV +G G +G +H+ +++ R++ TD ++ Q V Sbjct: 341 SFWDKVEVGQKFTGTIKTIKDYGAFVDLG-GVDGFLHVGEMSWTRIKHPTDCVREQQTVD 399 Query: 674 VKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAE 708 V VL +DR+ +I L +++ + +A + Sbjct: 400 VVVLSLDREKQKIGLGMRQLVQNPWNSAPETYAVGK 435 >UniRef50_B8I046 RNA binding S1 domain protein n=13 Tax=Clostridia RepID=B8I046_CLOCE Length = 144 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/92 (44%), Positives = 56/92 (60%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +EVG++ GKVT I FGAFV + GK GLVHIS++A + V+ V+ +L+ Q V VK+L Sbjct: 3 LEVGKIVEGKVTGITAFGAFVQLPEGKTGLVHISEVAQEYVKDVSAHLKENQIVKVKILS 62 Query: 679 VDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 VD G++ LSIK+A P AE Sbjct: 63 VDTNGKVSLSIKKAMAGGPTTVPKFRPPAEVD 94 >UniRef50_B0PAJ2 Putative uncharacterized protein n=6 Tax=Bacteria RepID=B0PAJ2_9FIRM Length = 163 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 41/94 (43%), Positives = 62/94 (65%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++EVG + G+VT I FGAF+ + GGK G+VHIS++A V+++TDYL M Q V VK++ Sbjct: 2 QLEVGSILEGRVTGITKFGAFIELPGGKTGMVHISEVASSYVKEITDYLSMNQMVKVKII 61 Query: 678 EVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + +G++ LSIK+A S AP A +G+ Sbjct: 62 GITPEGKVSLSIKQAAPASPTQDRQPAPRALRGQ 95 >UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD Length = 239 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 24/246 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R GR +R + + GS L G+T+ + T + +A V L G+ Sbjct: 2 KRPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTV----SAEAGVPRFLKGQGK 57 Query: 374 DTFLFHYNFPPYSVGET----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P + GE G R + RL R + A + T+ V Sbjct: 58 GWLTAEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117 Query: 430 EITESNGSSSMASVCGASLALMDA-----------GVPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ GA +AL+DA G P+K VA +++G+ + + Sbjct: 118 DVIQADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGE----PI 173 Query: 479 SDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED + D V + G +Q + E E + L A + + Sbjct: 174 LDLDYPEDSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQ 233 Query: 538 EQAINA 543 + Sbjct: 234 RAVLAD 239 Score = 49.8 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 37/238 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 + + T R A +V+V DT V TV + GQ LT Y Sbjct: 13 RPIRI-TRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTAEY------- 64 Query: 71 GRIP---GSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNE--VQVIATVVSVNP 122 G +P G RE GR I RLI R +R + E + V V+ + Sbjct: 65 GMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADG 124 Query: 123 QVNPDIVAMIGASAAL-----------SLSGIPFNGPIGAARVGYINDQYVLNPTQDELK 171 ++ GA AL +L G P + A VG + +L+ E Sbjct: 125 GTRT--ASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDS 182 Query: 172 ESKLDLVVAGTEAAVLMVE----SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 +++ DL V T+A +E +E + +++ + + + + + ++ + Sbjct: 183 DAETDLNVVMTDAGGF-IEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239 >UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta RepID=B2AAV3_PODAN Length = 277 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 19/244 (7%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG--- 370 R+DGR + +R + + GS+ G T+ + T + + G Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72 Query: 371 -------ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 + + + +S + G +R + + A + FP+ Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATL-HTHLFPH 131 Query: 424 T-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG----LVKEGDNYVVL 478 + + + + +GS A + A+LA +DAG+P+ V G + L Sbjct: 132 SQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADPL 191 Query: 479 SDILGDEDH-LGDMDFKVAGSRDGISALQMDIKIEGITKE-IMQVALNQAKGARLHILGV 536 D+ E+ L + G D + AL + +++ E ++ V ++ K R IL Sbjct: 192 LDLNHQEEQELPGLTVATLGESDKVVALVCESRVQISRLEGMLAVGVDGCKQVR-EILDQ 250 Query: 537 MEQA 540 + +A Sbjct: 251 VIKA 254 >UniRef50_B6AR90 Ribosomal protein S1 n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AR90_9BACT Length = 591 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 27/261 (10%) Query: 467 GLVKEGDNYVVLSDI-LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQV---- 521 G V E V+ DI E H+ +F S + I AL K++ I ++ Sbjct: 52 GRVIEIYPNEVVVDIGYKSEGHISKSEF----SEEEIQAL----KVDDIIHVYLEEREDV 103 Query: 522 ----ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHT-IKINPDKIKDVIGKGG--S 574 L++ K R+ + +E+ N RI + ++ + G Sbjct: 104 NGNLVLSKEKADRMKVWDAIEEQFNRSDVIEGRIISRIKGGMTVDVGLKAFLPGSQIDLR 163 Query: 575 VIRALTEETGTTIEIE----DDGTVKIAATDGEKAKHAIRRIEEITAE-IEVGRVYTGKV 629 +R + G TI++ + I + + R +++T + ++ G + G V Sbjct: 164 PVRDMDRLIGQTIQVRIIKMNKKRGNIIVSRRVLLEEWRDRRKKVTMDALKEGEILEGIV 223 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLS 688 I D+GAF+ +G G +GL+HI+ ++ RV +++ +G +V V VL+ D++ GR+ L Sbjct: 224 KNITDYGAFIDLG-GIDGLLHITDMSWGRVTNPQEFMNVGDKVNVVVLKHDKETGRVSLG 282 Query: 689 IKEATEQSQPAAAPEAPAAEQ 709 +K+ T P + Sbjct: 283 LKQLTPDPWTTVGTRYPEGTR 303 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D V++ D + K + +++ + VG V +GK+ + DFGAFV Sbjct: 346 MSVGDTIEVQVLKIDEKNRKISLGLKQLGPNPWDDVETKYPVGAVVSGKIKSLTDFGAFV 405 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ 697 + G +GL+HIS ++ K V ++ + GQ+V V VL+++++ R+ L K+ +E Sbjct: 406 GLDEGIDGLIHISDMSWTKHVRHPSEVFKKGQKVEVVVLKIEKERQRLSLGFKQVSEDPW 465 Query: 698 PAAAP-EAPAA 707 + P P Sbjct: 466 DSDIPSRFPVG 476 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 9/130 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D V + D E + + + G +V I D+GAF+ Sbjct: 259 MNVGDKVNVVVLKHDKETGRVSLGLKQLTPDPWTTVGTRYPEGTRVNARVVSITDYGAFL 318 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQ 697 I G EGL+H+++++ V+ + + +G + V+VL++D + R I L +K+ Sbjct: 319 EIEPGIEGLMHVTEMSWNHEVKHPSKIMSVGDTIEVQVLKIDEKNRKISLGLKQLGPNPW 378 Query: 698 PAAAPEAPAA 707 + P Sbjct: 379 DDVETKYPVG 388 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 +I + VG G VT+++DFG FV + G EGLVH+S++ + +++ Q G +P Sbjct: 468 DIPSRFPVGSFLDGVVTKVMDFGFFVELAEGIEGLVHVSEVDLESGQRLDQVYQPGMSLP 527 Query: 674 VKVLEVDR-QGRIRLSIKEATEQSQPAAAP 702 V+V+++D + +I LS+K + S AAP Sbjct: 528 VRVIKLDPAERKIGLSMKAVSADSPLEAAP 557 Score = 42.1 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 A+ R + ++ G V G+V I V IG EG + S+ +++ ++ Sbjct: 29 SAEEMDRLYADTLRNLDEGSVVEGRVIEIYPNEVVVDIGYKSEGHISKSEFSEEEIQ--- 85 Query: 664 DYLQMGQEVPVKVLEV-DRQGRIRLSI-KEATEQSQPAAAPEAPAAEQGE 711 L++ + V + E D G + LS K + A + ++ E Sbjct: 86 -ALKVDDIIHVYLEEREDVNGNLVLSKEKADRMKVWDAIEEQFNRSDVIE 134 >UniRef50_P80870 General stress protein 13 n=12 Tax=Bacillales RepID=GS13_BACSU Length = 130 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + A+ EVG VYTGKVT + +GAFVA+ +GLVHIS++ V+ + ++L +G EV V Sbjct: 1 MAAKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQV 60 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQ-PAAAPEAPAAEQ 709 KVL VD + G+I LSI+ + + P P A Q Sbjct: 61 KVLAVDEEKGKISLSIRATQAAPEKKESKPRKPKAAQ 97 >UniRef50_D0J9D1 30S ribosomal protein S1 n=25 Tax=Bacteria RepID=D0J9D1_BLASP Length = 606 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++E + + D +K + + ++VG GKV+ + D+GAFV Sbjct: 275 VQLEQELKFVVLGVDKDKNRVQLGLKQLQPHPWNSLDNNLKVGNKVKGKVSVLADYGAFV 334 Query: 640 AIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 I G E L+HIS+++ + D++Q+G E+ +L +DR + ++ LS+K+ T Sbjct: 335 EIIPGVEALLHISEMSWSYDLSSTQDFVQIGDEIEAVILTIDRQERKMSLSVKQLTPDPW 394 Query: 698 PAAAPEAPAAEQ 709 + P + Sbjct: 395 IDIQNKYPIGSK 406 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 2/105 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + + +E+ ++++ G+V GK+ I+ +GAFV +G G + L+HI+ ++ + T+ Sbjct: 216 RDIEEQRKEMISKLDKGQVLEGKIKNILPYGAFVDLG-GVDALLHITDMSWPHINHPTEV 274 Query: 666 LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +Q+ QE+ VL VD+ + R++L +K+ + + Sbjct: 275 VQLEQELKFVVLGVDKDKNRVQLGLKQLQPHPWNSLDNNLKVGNK 319 Score = 73.3 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++I D+ I D ++ K + +I + +G + G V + +FG + Sbjct: 362 VQIGDEIEAVILTIDRQERKMSLSVKQLTPDPWIDIQNKYPIGSKHVGIVRKFTNFGISL 421 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ 697 + G G+++ + ++ K+++ +++ + ++ V +L +D Q R+ L K+ TE Sbjct: 422 ELEKGISGIIYANDLSWGKKIKHPSEFCNINDKLEVIILALDPQTRRLNLGHKQITENPW 481 Query: 698 P 698 Sbjct: 482 E 482 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 E+ K + E +I+ +Y G +T I + V IG EG + IS+ + Sbjct: 45 QEERKKFEKIYAETLPKIQELEIYQGTITHITEKNLIVDIGFKAEGAIPISEFRENF--- 101 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSI-KEATEQSQPAAAPEAPAAE 708 ++G+++ V V+++D +G+ LS K ++ E Sbjct: 102 ---NFKVGEKMEVMVVKMDYKGQCILSYQKAKIMRNWERINEAHEKGE 146 Score = 45.6 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 550 EFAPRIHTIKINPDKIKDVIGK-----------GGSVIRALTEETGTTIEIEDDGTVKIA 598 E P+I ++I I + K G I E + + + V Sbjct: 57 ETLPKIQELEIYQGTITHITEKNLIVDIGFKAEGAIPISEFRENFNFKVGEKMEVMVVKM 116 Query: 599 ATDGE-----KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 G+ + +R E I E G V G V G + I E + S Sbjct: 117 DYKGQCILSYQKAKIMRNWERINEAHEKGEVILGYVAARTKGGLIIEIFD-IECFLPGSH 175 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPE 703 I K V Y +G+ + VKV++++++ + + +S K E+ E Sbjct: 176 INVKPVRDYDTY--VGKTMEVKVVKINQKTKNVVVSHKILIERDIEEQRKE 224 >UniRef50_A1QYS7 SSU ribosomal protein S1P n=23 Tax=Borrelia RepID=A1QYS7_BORT9 Length = 555 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTRI 632 E I + D +KI + K + + A+ +V + GKV +I Sbjct: 225 VENIEDFIRVGDKLRLKIIKLNVNAVKMELSLKALKTNPWDSVEAKYKVESIVKGKVVKI 284 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRV-EKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIK 690 + FGA V + G +HIS + RV + + +++GQ V VK+LE+D++ +I L IK Sbjct: 285 LPFGAVVELDSEISGFIHISNFSWVRVIKSPQELVKVGQIVEVKILEIDKENQKISLGIK 344 Query: 691 EATEQSQPAAAPE 703 + E A Sbjct: 345 QVNENPWNNLAQR 357 Score = 80.6 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 1/134 (0%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 + R L E + DG I + + + + +E+ + G + G V RI Sbjct: 140 KLKRGLVVEFYVVQADKTDGLRLILDRRTLERERELVKKKELVSSYNEGDIVDGVVERIT 199 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEA 692 D+ A + + G++H IA RVE + D++++G ++ +K+++++ ++ LS+K Sbjct: 200 DYSAIIKVKNLVLGVLHKRNIAFNRVENIEDFIRVGDKLRLKIIKLNVNAVKMELSLKAL 259 Query: 693 TEQSQPAAAPEAPA 706 + + Sbjct: 260 KTNPWDSVEAKYKV 273 Score = 62.9 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ VKI D E K + + VG+V G V I GAFV Sbjct: 319 VKVGQIVEVKILEIDKENQKISLGIKQVNENPWNNLAQRCAVGKVVQGVVKNITKTGAFV 378 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQP 698 +I G + + I+ +Y ++G + KV+E+D + + I+L IK+ E Sbjct: 379 SIEEGIDAYISKFDISWIDEVNPEEYFKLGSSISGKVIELDAKKQNIKLGIKQLEENPWD 438 Query: 699 AAAPEAPAAEQGE 711 + + E Sbjct: 439 DFSKSYKKGDTLE 451 Score = 44.8 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 583 TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 +G IE++ ++ + + G ++ G V + Sbjct: 412 SGKVIELDAKKQNIKLGIKQ----LEENPWDDFSKSYKKGDTLEVEIVEKKSKGVQVRVY 467 Query: 643 GGKEGLVHISQIADKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIR-LSIKEATEQSQPA 699 G G + Q+ D + + + L +G ++ V + +D + ++ LS + EQ Sbjct: 468 GKIMGFISKIQLGDTKESSLETFENLNIGDKLKVIITNIDFKNKLVLLSYRAYKEQKSSE 527 Query: 700 AAPEAPAAEQGE 711 E E Sbjct: 528 EISSYLFKEDDE 539 >UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTS5_TREPR Length = 518 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 + + A + G V G + I D+GAF+ +G G +GL+HI+ I+ +R+ + Sbjct: 176 RRQAENRNRLLASLGDGDVVQGVIKNITDYGAFIDLG-GLDGLLHITDISWRRIRHPSQV 234 Query: 666 LQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 L +G + VKVL+ DR R+ L +K+ PA + Sbjct: 235 LSVGDRITVKVLKFDRTKTRVSLGLKQLHPDPWAGIIGRYPAGSR 279 Score = 91.8 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 587 IEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + + D TVK+ D K + I G G+VT I D+G FV Sbjct: 235 LSVGDRITVKVLKFDRTKTRVSLGLKQLHPDPWAGIIGRYPAGSRVRGRVTNIADYGLFV 294 Query: 640 AIGGGKEGLVHISQIADKRVEKVTD-YLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 697 I G EGL+H+S++ K ++ + ++GQ V V VL+V + + RI L +K T Sbjct: 295 EIERGIEGLLHVSEMHQKSKGTISLRHFRVGQYVNVTVLDVSKTRRRISLGMKHGTLNPW 354 >UniRef50_B8DPH9 RNA binding S1 domain protein n=4 Tax=Desulfovibrio vulgaris RepID=B8DPH9_DESVM Length = 564 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 36/270 (13%) Query: 464 IAMG----LVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIM 519 +A+G V G L D ED G++ V + ++ Sbjct: 76 VAIGEDTVFVATGAKVDGLVDRKELEDAEGNLPVAVGDVLELYV----------VSANAN 125 Query: 520 QVALNQAKGARLHILGVMEQAINAPRG-DISEFAPRIHTIKINPDKIKDVIGKGGSVIRA 578 ++ L++A G ++ L ME A+NA + P + K + +R Sbjct: 126 EIKLSRAMGGQVG-LAQMEDALNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQMDLRP 184 Query: 579 LTEE---TGTTI-----EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 630 E TG T +E +G + + + + + ++ G V G V Sbjct: 185 GAEPDSFTGQTFQFLITRLEQNGRNIVVSRRMLLEREQAESLSALMENVKEGDVLEGTVA 244 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV----------D 680 R+ FGAFV I G EG+VH+S+++ RV++ + + +G +V VKVL + D Sbjct: 245 RLAPFGAFVEIAPGLEGMVHVSELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEGKGGKD 304 Query: 681 RQG--RIRLSIKEATEQSQPAAAPEAPAAE 708 + RI LSI++ + A A + Sbjct: 305 SRKGPRISLSIRQVSGDPWQDVADRLDADQ 334 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 128/290 (44%), Gaps = 48/290 (16%) Query: 451 MDAGVPIKAAVAGIAMG----LVKEGDNYVVLS--DI-LGDE-DHLGDMDFKVAGSRDGI 502 ++AG+PI+ V G G V + + S D+ G E D F+ I Sbjct: 146 LNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQMDLRPGAEPDSFTGQTFQFL-----I 200 Query: 503 SALQMDIKIEGITKEIM---QVA------LNQAKGARLHILGVMEQAIN--APRGDISEF 551 + L+ + + +++ ++ + A + K V+E + AP G E Sbjct: 201 TRLEQNGRNIVVSRRMLLEREQAESLSALMENVKEG-----DVLEGTVARLAPFGAFVEI 255 Query: 552 AP----RIHTIKINPDKIK---DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 AP +H +++ +++ + + G V + G ++G + G + Sbjct: 256 APGLEGMVHVSELSWSRVQQADEAVSVGDKVRVKVLGIAGA-----EEGKGGKDSRKGPR 310 Query: 605 AKHAIRR-----IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KR 658 +IR+ +++ ++ ++ TGKVTR+ FGAF+ + G EGLVH+S+++ +R Sbjct: 311 ISLSIRQVSGDPWQDVADRLDADQILTGKVTRLAPFGAFIEVLPGVEGLVHLSEMSWTRR 370 Query: 659 VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAA 707 + K + + G+ V V++ E+D + R+ LS+++A PA Sbjct: 371 INKPEEAVTPGETVSVRIKELDPARKRLSLSLRDAEGDPWSTVEERFPAG 420 Score = 53.6 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 E I+ D +++ + + +EE G TG V + FG FV Sbjct: 382 ETVSVRIKELDPARKRLSLSLRDAEGDPWSTVEE---RFPAGSTVTGTVEKRAPFGLFVN 438 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT-EQSQP 698 + G GL+ + A K L G EV + V ++D + RI L+ +AT E Sbjct: 439 LAPGVTGLLPNAVAATSPQSKTYAGLNPGAEVSLVVRDLDVKARRISLAPADATGEDDDE 498 Query: 699 AAAPEAPAAEQ 709 P + Sbjct: 499 WRKLAQPQKRE 509 >UniRef50_B8D058 RNA binding S1 domain protein n=60 Tax=cellular organisms RepID=B8D058_HALOH Length = 722 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 559 KINPDKIKDVIGKGGSVIRALTEETGTTI-EIEDDGTVKIAATDGEKAKHAIRRIEEITA 617 IN + + G ++ + + + D+ I +D K + Sbjct: 599 SINIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFRSDVLKME----------- 647 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++E G + G V +VDFGAFV IG +GLVHIS+++ V+ +Q+G V VK+L Sbjct: 648 DLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKIL 707 Query: 678 EVDR-QGRIRLSIK 690 EVD + RI LS+K Sbjct: 708 EVDERRNRISLSMK 721 >UniRef50_A9KQA3 RNA binding S1 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQA3_CLOPH Length = 303 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 36/234 (15%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 I ++ E +L +D L K + ++ +++ + G ++ Sbjct: 75 ITAMILSEDKEGNLLLSKKKADDILSWDKLKTMMTERTVTTVKVSNAVNGGVVTYLE--- 131 Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 583 I F P ++DV G V++ + Sbjct: 132 -----------------------GIRAFIPASMLS---LSYVEDVSTFVGKVLKVIV--- 162 Query: 584 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 I + + + + + + ++++ G V TG V +++ FGAFV+IG Sbjct: 163 ---ITADKEANKLVLSAKEVLREEEAKEKSHKISQVQKGIVTTGIVDKLMPFGAFVSIGE 219 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 G GLVHISQI KR++ + L+ GQEV VKVL+V + G+I LSIK ++ + Sbjct: 220 GLSGLVHISQICGKRIKSPAEVLKEGQEVKVKVLDV-KDGKISLSIKAVSDAEE 272 Score = 57.1 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 +E + G + G V I D V + EG++ + ++++ + Sbjct: 8 MDDFKTELEHSLKRLTEGDLVKGTVIGISDTEVTVDLSYSSEGIIKLEELSNDPRFSIKA 67 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 + +G+E+ +L D++G + LS K+A + Sbjct: 68 DVTIGEEITAMILSEDKEGNLLLSKKKADD 97 >UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus RepID=RS1_STAAC Length = 391 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 8/153 (5%) Query: 560 INPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEI 619 I+ D I+D G IR EE ++ + I + + + + +++ + Sbjct: 138 ISTDFIEDFSVFDGQTIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSL 191 Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 G V GKV R+ FGAF+ IG G +GLVH+S+++ + V+ + + +GQ+V VK+ + Sbjct: 192 NEGDVIDGKVARLTQFGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSI 250 Query: 680 DRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 DR RI LSIK+ + + E Sbjct: 251 DRDTERISLSIKDTLPTPFENIKGQFHENDVIE 283 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 8/118 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 + I D VKI + D + + ++ E I + V G V R+ +FGAFV Sbjct: 237 VSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFV 296 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQS 696 I G +GLVHIS+IA K + + L+ GQ+V VK+L +D + R+ LSIK Sbjct: 297 EIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354 Score = 64.8 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVTDYLQMGQE 671 E + +I+ G TG+V ++ D V I GGK G++ ISQ++ ++ ++ ++ G E Sbjct: 7 ESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDE 66 Query: 672 VPVKV--LEVDRQGRIR---LSIKEATEQ 695 V V +E D + LS ++ + Sbjct: 67 VEAYVTKVEFDEENETGAYILSRRQLETE 95 Score = 56.0 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 11/151 (7%) Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 P + D +V+ +G V E T +E +++ + + Sbjct: 44 IPISQLSTHHIDSPSEVVKEGDEV-----EAYVTKVEFDEENETGAYILSRRQLETEKSY 98 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 + +++ + KVT +V G V + G+ G V S I+ +E + + GQ Sbjct: 99 -SYLQEKLDNNEIIEAKVTEVVKGGLVVDV--GQRGFVPASLISTDFIEDFS--VFDGQT 153 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQPAAA 701 + +KV E+D R+ LS K ++ A Sbjct: 154 IRIKVEELDPENNRVILSRKAVEQEENDAKK 184 >UniRef50_C9KQS8 Protein YhgF n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQS8_9FIRM Length = 733 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 +E++ G + G V I DFGAFV IG ++GL+HIS++A +RV+ + + +GQ + V Sbjct: 650 LSELKPGTILRGTVRNITDFGAFVDIGLHEDGLIHISELAKRRVKHPLEVVSIGQVLRVM 709 Query: 676 VLEVD-RQGRIRLSIKEATEQS 696 V+ VD ++GRI LS+K E++ Sbjct: 710 VISVDEKRGRIGLSLKRVPEEA 731 >UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NP71_PHYIN Length = 252 Score = 112 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 16/221 (7%) Query: 314 PRIDGREK--DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 R+D D +R ++ G + GSA G T+ L G D + E Sbjct: 25 ERLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAV-YGPRTDTRARREF--S 81 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV-RVVSE 430 + + + P++ T E+ + + + + + K P + V Sbjct: 82 KDGQLVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAV-MLHKLPKCIISVFVT 140 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 I E +G A++ ASLAL DA V + V + G+V N V+ D +E+ GD Sbjct: 141 ILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIV----NGSVVLDPSREEEQRGD 196 Query: 491 --MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 + S ++ + KI +Q A++ A Sbjct: 197 GKLALAYMPSMGRVTYMLQAGKIH---HTQLQEAVDLCTDA 234 Score = 42.9 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 22/202 (10%) Query: 27 ATAAVMVSMDDTAVFVTVVG-QKKAKPGQDFFP---LTVNYQERTYAAGRIPGSFFRREG 82 A + V + T V V G + + ++F L + + YA RRE Sbjct: 50 AAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVK---YAP--FADKLTRRER 104 Query: 83 RPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 E ++ +++ + P + + + V T++ + V A+ AS AL+ Sbjct: 105 GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLA--AALNCASLALAD 162 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA-----GTEAAVLMVESEAQL 195 + + + A+ G +N VL+P+++E + L +A G +L +A Sbjct: 163 AAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYML----QAGK 218 Query: 196 LSEDQMLGAVVFGHEQQQVVIQ 217 + Q+ AV + VI+ Sbjct: 219 IHHTQLQEAVDLCTDACTGVIR 240 >UniRef50_UPI00016C0B56 30S ribosomal protein S1 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B56 Length = 373 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 8/126 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ + V I + D E K A+ E A +E G++ G VTR FGAFV Sbjct: 246 VQEGQEVEVSIISIDRENGKIALALKDINNDPWENTVANLEEGQLVKGIVTRFALFGAFV 305 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQP 698 I G EGL+HISQI+ R K D L GQEV VK++++D+ + RI LS+ A ++ P Sbjct: 306 RIADGVEGLIHISQISTPRPTKPQDVLTSGQEVEVKIIKIDKAEKRISLSLIAALDEIDP 365 Query: 699 AAAPEA 704 Sbjct: 366 ETKKMY 371 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 11/165 (6%) Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 V++ + + F P + + +GK V + E + Sbjct: 125 DVIKGGLTTSIKGVRAFIPGSQITDTYVEDLHSYVGKSIDV--QIIEF------VPQKRK 176 Query: 595 VKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 + ++ K + +R + +++ G Y GK+T+++++GAFV + G EGL+H S + Sbjct: 177 LIVSGKALAKQRRLEKR-QARLDQLQEGEKYIGKITKLMNYGAFVDLD-GIEGLIHNSDL 234 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQP 698 + R++ D +Q GQEV V ++ +DR+ G+I L++K+ Sbjct: 235 SWSRIKHPKDIVQEGQEVEVSIISIDRENGKIALALKDINNDPWE 279 >UniRef50_A7GUA8 RNA binding S1 domain protein n=7 Tax=Bacillales RepID=A7GUA8_BACCN Length = 133 Score = 112 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 ++ + G + GKVT I D+GAFVA+ +GLVHIS+I + V+ V DYL++G V Sbjct: 19 HMSEQYTTGVIVKGKVTGIQDYGAFVALDDETQGLVHISEITNGYVKDVHDYLKIGDTVE 78 Query: 674 VKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAA 707 VKVL VD + ++ LS+K A + P A Sbjct: 79 VKVLSVDEEHKKMSLSLKAAKRKQGKVLVPNPSAK 113 >UniRef50_UPI00016BFB5D hypothetical protein Epulo_08978 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB5D Length = 131 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 ++ +IEVG++ G VT I FGAF+++ GLVHIS I +E + D +++G V V Sbjct: 1 MSEKIEVGQILEGTVTGIKPFGAFISLPNSYNGLVHISHITHGYLENIADAIKIGDVVKV 60 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 KVL VD +I LSIKEA E+ + P+ Sbjct: 61 KVLTVDLTNNKISLSIKEALEKPKQEERPK 90 >UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mansoni RepID=C4Q0C5_SCHMA Length = 258 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 12/182 (6%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 + R+DGR + IR +D + G + G +G T+ + + A + Sbjct: 4 IFYNGRRVDGRRPNEIRRVDCQFGS-GYSDGIVFLHQGNTKVIASVV---GPHAPRVKGD 59 Query: 369 MGERTDTFLFHYNFPPYSV--GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 T + PP++ GE + S R + V+ +K+P + + Sbjct: 60 GTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVI-RTEKYPMSQI 118 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ +S+GS +V +LAL DAG+ + V+ +GL V +D+ E Sbjct: 119 DIFLEVIQSDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSH----VFADLCRFE 174 Query: 486 DH 487 ++ Sbjct: 175 EN 176 >UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID=Q1IHI9_ACIBL Length = 609 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D VK+ D +K + + + + +G G+V + D+GAF+ Sbjct: 287 VQVGDQIQVKVLKFDRDKQRVSLGFKQLTPDPWLDASERYPIGARVHGRVISVTDYGAFI 346 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGLVH+S++ KR++ + + +G +V VL V+ ++ RI L +K+ Sbjct: 347 ELEQGIEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLKQLETNPW 406 Query: 698 PAAAPEAPAAEQGE 711 + + P E Sbjct: 407 ESLHEKFPVGGVVE 420 Score = 111 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 I++ + + + + + + V TG V + D+GAFV +G G + Sbjct: 209 IKLNKKRGNIVVSRKQILEEEQNDKKSKTLEHLNEDAVLTGTVKNLTDYGAFVDLG-GID 267 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAP 705 GL+HI+ ++ R+ D +Q+G ++ VKVL+ DR R+ L K+ T A+ P Sbjct: 268 GLLHITDMSWGRLTHPRDLVQVGDQIQVKVLKFDRDKQRVSLGFKQLTPDPWLDASERYP 327 Query: 706 AAEQ 709 + Sbjct: 328 IGAR 331 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQ 670 E + + VG V GKV + DFGAF+ I G +GLVH+S ++ KRV+ ++ L+ G Sbjct: 406 WESLHEKFPVGGVVEGKVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGD 465 Query: 671 EVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAE 708 +V VL ++ R+ L +K+ + Sbjct: 466 KVKAVVLAIEPDNRRLSLGVKQLQPDVWETFFETHRVGD 504 Score = 85.6 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 E VG + GKV R+ FGAF+ I G EGL H S+ +D+ + L+ GQE Sbjct: 493 WETFFETHRVGDIIHGKVLRLASFGAFIEIADGVEGLCHNSEASDEHGAPLK--LEPGQE 550 Query: 672 VPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPA 706 K+++++ + ++ LS++ E++ A Sbjct: 551 FDFKIIKMNPDEKKVGLSLRAVGEEASRVEIENYKA 586 >UniRef50_D0LJ72 Ribosomal protein S1 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJ72_HALO1 Length = 608 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 8/133 (6%) Query: 586 TIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 + + + I DGEK K + + I + G++ KV +++DFGAF Sbjct: 422 KGDEVEAVLLNIDTADGEKPKISLGIKQLNTDPWDRIPFDFPPGKIVDAKVLKVLDFGAF 481 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 V I G EGLVH+S+I+D+ V+ L GQE+ V++L VD ++ +I LS+K A ++ Sbjct: 482 VEIEKGIEGLVHVSEISDEHVDDPRKVLTPGQELKVQILSVDPQERKIGLSVKSANRATE 541 Query: 698 PAAAPEAPAAEQG 710 A A + G Sbjct: 542 MAEAQGYNSPTAG 554 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 5/101 (4%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQE 671 E++ + G V GKV I DFG FV I G +GLVH+S ++ +RV+ ++ Q G E Sbjct: 366 EQLNEKYPPGTVVKGKVRNIADFGIFVEIEEGIDGLVHVSDMSWTQRVKHPSEMFQKGDE 425 Query: 672 VPVKVLEVD----RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 V +L +D + +I L IK+ + P + Sbjct: 426 VEAVLLNIDTADGEKPKISLGIKQLNTDPWDRIPFDFPPGK 466 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K E ++ G+ G V + ++GAF+ +G G +GL+HI+ ++ RV ++ Sbjct: 187 KERAALKESTLERLKEGQEVEGIVKNLTEYGAFIDLG-GIDGLLHITDMSWGRVNHPSEL 245 Query: 666 LQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 Q+G V VKVL+ + R+ L +K+ +E A + Sbjct: 246 FQVGDHVRVKVLKFNADTERVSLGLKQISEDPWSKAQEKY 285 Score = 88.3 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 594 TVKIAATDGEKAKHAIRRIEE-----ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 V D E+ +++I E + G V GKV + D+GAF+ + G EGL Sbjct: 255 KVLKFNADTERVSLGLKQISEDPWSKAQEKYIPGTVVRGKVVSLKDYGAFIELEEGIEGL 314 Query: 649 VHISQIAD-KRVEKVTDY-LQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPA 706 VHIS+++ +RV+ + V + + RI L +K+ + P Sbjct: 315 VHISEMSWTRRVKHPSKMVAVGDVVDAVVLDVDVKNNRISLGMKQLEPNPYEQLNEKYPP 374 Query: 707 A 707 Sbjct: 375 G 375 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 12/131 (9%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G VI L E + G ++ ++ K +EI+A E + G +T+ Sbjct: 75 GDVIDVLLES-----RENEAGMCVLSKEKADRFKV----WDEISAACERDELIEGTITQR 125 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 V G V I GG + + SQ+ + V + + +GQ KV++ + ++G I LS + Sbjct: 126 VKGGLSVTIRGGVKAFLPGSQVDLRPVRNLDAF--IGQSYKFKVIKFNKKRGNIVLSRRV 183 Query: 692 ATEQSQPAAAP 702 E+ + A Sbjct: 184 LLEKERAALKE 194 >UniRef50_B8HZ35 RNA binding S1 domain protein n=18 Tax=Bacteria RepID=B8HZ35_CYAP4 Length = 763 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 15/144 (10%) Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 G +R + E +E G A + + ++ I +++ VG G VT Sbjct: 606 GEPTLRDILAE------LEKPGRDPRAEFTFARFRADVKAI----SDLSVGMQLEGMVTN 655 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 + +FGAFV IG ++GLVH+SQ+AD+ V +++GQ V V+VLEVD + RI LS++ Sbjct: 656 VANFGAFVDIGVHQDGLVHVSQLADRFVSDPKQIVKVGQVVNVRVLEVDEKLKRISLSMR 715 Query: 691 EATEQSQ---PAAAPEAPAAEQGE 711 T + Q P ++P AP +++ + Sbjct: 716 SDTPERQGQSPVSSP-APKSQRSQ 738 >UniRef50_B1C7U3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C7U3_9FIRM Length = 666 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 13/146 (8%) Query: 555 IHTIKINPDKIKDV--IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRI 612 IH I ++ ++ + K G ++A+ E D+ VK++ D K Sbjct: 502 IHISDIAWKRVGNINDLYKVGDSVKAIVTELDK-----DNYKVKLSVKDLTK-----EPW 551 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 +E VG+ + +FGAF I EGL+HISQ++ RV V D ++ G EV Sbjct: 552 QEFIENYSVGQTVKATIKNTTNFGAFAEIIPDVEGLIHISQLSHDRVNNVEDAVKTGDEV 611 Query: 673 PVKVLEVDRQGR-IRLSIKEATEQSQ 697 VK++++++ R + LSIKE + + Sbjct: 612 NVKIIDINKDKRKVSLSIKETMDPPK 637 Score = 107 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 20/259 (7%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA-GSRDGISALQMDIKIEGITKEIMQV- 521 + M + + D V +D L D + D+ K A G + + ++M+ ++ ++V Sbjct: 310 VTMNIGYKSDGIVKKADFLY--DLMEDLTSKAAKGDKVKVMVMKMNDGTGNVSLSKIKVD 367 Query: 522 ---ALNQAKGA-------RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK 571 AL++AK + I V++ + G I F P + + IKD Sbjct: 368 ELGALDEAKEKFDSKETVKAKITKVVKGGLIVDLGFIKAFMPASY---YDVRFIKDFDSL 424 Query: 572 GGSVIR-ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 630 G I + E +I + + E+ E A +E+G+ + Sbjct: 425 LGKEIECRIVEFDKQKNKIIVSRKILLEEAYKERKAKEKELKEAAIAALEIGKEVEAPIK 484 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSI 689 I +FG F+ + G +G +HIS IA KRV + D ++G V V E+D+ +++LS+ Sbjct: 485 NITNFGMFIDL-NGVDGFIHISDIAWKRVGNINDLYKVGDSVKAIVTELDKDNYKVKLSV 543 Query: 690 KEATEQSQPAAAPEAPAAE 708 K+ T++ + Sbjct: 544 KDLTKEPWQEFIENYSVGQ 562 Score = 47.9 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 D + IEE EI G + G++ + + IG +G+V + +E Sbjct: 274 DNNMVDSFEKNIEESIKEIREGDIVEGEIVMVDHNEVTMNIGYKSDGIVKKADFLYDLME 333 Query: 661 KVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +T G +V V V+++ D G + LS + E A E +++ Sbjct: 334 DLTSKAAKGDKVKVMVMKMNDGTGNVSLSKIKVDELGALDEAKEKFDSKE 383 >UniRef50_C9XMD9 Putative 30S ribosomal protein S1 n=7 Tax=Clostridium RepID=C9XMD9_CLODC Length = 424 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-IEEITAEIEVGRVYTGKVTRIVD 634 I EE I+ E + + E+ K I+ E++ +EVG+ GKVT+I+ Sbjct: 187 INKEREERRAQIKAEKEAERARIKQEREEEKARIKAAKEDLFNSLEVGQKRDGKVTKIMP 246 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEAT 693 +GAFV IG G EGL HI+ +A RVE V D + GQEV V VL+V+++ +I L++K+ Sbjct: 247 YGAFVDIG-GIEGLAHINNLAWTRVESVEDVVSEGQEVEVYVLDVNKETKKIALALKDIN 305 Query: 694 EQSQPAAAPEAPAAE 708 A E + Sbjct: 306 NDPWDLIAKEVQIDD 320 Score = 88.7 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 E + + V + + E K A+ + I E+++ V KV RI Sbjct: 270 VESVEDVVSEGQEVEVYVLDVNKETKKIALALKDINNDPWDLIAKEVQIDDVVNAKVLRI 329 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKE 691 ++ GAFV I G + + IS+++D RV KVT+ + +G EV VK+L+ + R+ +SIKE Sbjct: 330 IEKGAFVQIKEGVDAYLPISELSDTRVAKVTNVVNIGDEVKVKILDFKPKTKRMLVSIKE 389 Query: 692 ATEQSQPAAAP 702 AT + + Sbjct: 390 ATREPEEDITE 400 Score = 53.6 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + + E++ ++++VG + TGK+T + + + + G +G++ IS++ ++ + + D Sbjct: 10 MQELLDQQEQVFSKVKVGELTTGKITAVRNDEVQLGLDYGFDGIIPISELNIEKNQYIED 69 Query: 665 YLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEA 704 +G E+ + +V + G I LS + +++ A +A Sbjct: 70 IYHIGDEITAVITKVSQKDGTITLSKLQLDKRNDFAELQKA 110 >UniRef50_A5D5X0 Predicted RNA binding protein n=5 Tax=Firmicutes RepID=A5D5X0_PELTS Length = 126 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 IEVG V G VT I +FGAF+ + GG+ GLVHIS+IA+ V+ V D+L+ +V VKV+ Sbjct: 3 IEVGSVLEGVVTGITNFGAFIELPGGETGLVHISEIAEVYVKDVHDFLKTNDKVTVKVIS 62 Query: 679 VDRQGRIRLSIKEATEQ 695 +D +G+I LSIK+ Sbjct: 63 IDPKGKIGLSIKQVNPS 79 >UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P9I6_USTMA Length = 273 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 15/239 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPR--THGSALFTRGETQALVTATLGTARDAQV 364 + AG RIDGR++ +R + ++ G G A T+G T +V+AT+ R+A+ Sbjct: 5 ELLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLT--IVSATVFGPREARS 62 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +M +R + + P+ E RR + K V+ +P + Sbjct: 63 GANVMHDRA-SVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVI-HTHLYPRS 120 Query: 425 -VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 + + ++ + +G A++ ++LAL+DAG+ ++ VA ++ G+ + D+ Sbjct: 121 QIDIFVQVHQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSA----MLDLSN 176 Query: 484 DED-HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 E+ L + V I+ ++ ++ E + A A + ME A+ Sbjct: 177 TEEQDLPHVTVAVLPRTKQITLASLETRLH---VERFEQIFTLAIQAVAVLHNEMELAV 232 >UniRef50_C8NGU9 Histidine triad domain-containing protein n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGU9_9LACT Length = 751 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 5/122 (4%) Query: 573 GSVIRALTEETGT---TIEIEDDGTVKIAATDGEKAKHAIRRIEEI-TAEIEVGRVYTGK 628 G + L EE G T+E+ DG +K E+ I R + + +++VG G Sbjct: 622 GLNTKELKEEFGIGQETLELVMDGLLKPGRDPREEVAGPILRSDVLKMEDLQVGMELEGT 681 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 V +VDFGAFV IG ++GLVHIS++ V+ +D + +G V V V E+D ++GR+ L Sbjct: 682 VRNVVDFGAFVDIGVKQDGLVHISKLKKGFVKHPSDVVAVGDIVTVWVTELDLKKGRVGL 741 Query: 688 SI 689 S+ Sbjct: 742 SM 743 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 ... 816 0.0 UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 809 0.0 UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 T... 809 0.0 UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 T... 807 0.0 UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 ... 787 0.0 UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 ... 786 0.0 UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Ta... 782 0.0 UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 T... 782 0.0 UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 T... 780 0.0 UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 T... 777 0.0 UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 776 0.0 UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 T... 775 0.0 UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 T... 765 0.0 UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 T... 762 0.0 UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Ta... 762 0.0 UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 T... 756 0.0 UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Ta... 754 0.0 UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polyn... 753 0.0 UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 752 0.0 UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 T... 752 0.0 UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Ta... 752 0.0 UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 T... 748 0.0 UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, s... 747 0.0 UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polyn... 745 0.0 UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 ... 745 0.0 UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protei... 743 0.0 UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Ta... 739 0.0 UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Ta... 739 0.0 UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteri... 737 0.0 UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Ta... 737 0.0 UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Ta... 735 0.0 UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Ta... 732 0.0 UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Ta... 730 0.0 UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular o... 729 0.0 UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Ta... 729 0.0 UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Ta... 727 0.0 UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Ta... 719 0.0 UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 ... 719 0.0 UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 T... 719 0.0 UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular o... 717 0.0 UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 T... 715 0.0 UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 T... 712 0.0 UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polyn... 712 0.0 UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Ta... 712 0.0 UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 T... 711 0.0 UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 702 0.0 UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Ta... 696 0.0 UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 T... 682 0.0 UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=... 680 0.0 UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mit... 671 0.0 UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 T... 665 0.0 UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 T... 665 0.0 UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 T... 663 0.0 UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 T... 663 0.0 UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5... 662 0.0 UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G... 660 0.0 UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 ... 655 0.0 UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms Rep... 652 0.0 UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Ta... 650 0.0 UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostell... 647 0.0 UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Ta... 644 0.0 UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 T... 636 0.0 UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Ta... 633 e-180 UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG... 632 e-179 UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragm... 629 e-178 UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mit... 623 e-177 UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 T... 621 e-176 UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Ta... 613 e-174 UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing p... 608 e-172 UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransfera... 607 e-172 UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 603 e-171 UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Ta... 601 e-170 UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putat... 586 e-165 UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Ta... 586 e-165 UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Ta... 561 e-158 UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichop... 559 e-158 UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 T... 558 e-157 UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorh... 532 e-149 UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorh... 519 e-145 UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 ... 479 e-133 UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun se... 472 e-131 UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 ... 456 e-126 UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis R... 433 e-119 UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragm... 324 7e-87 UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornu... 304 7e-81 UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 237 8e-61 UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE 215 5e-54 UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q... 212 3e-53 UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n... 208 5e-52 UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelo... 206 3e-51 UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=... 200 2e-49 UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9... 197 1e-48 UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizo... 194 1e-47 UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun se... 192 3e-47 UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=A... 192 3e-47 UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME 191 7e-47 UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB 190 2e-46 UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=... 188 7e-46 UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 T... 186 3e-45 UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94... 185 7e-45 UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus Rep... 184 9e-45 UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n... 183 2e-44 UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosac... 183 2e-44 UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyos... 182 4e-44 UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agarica... 181 8e-44 UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6... 180 1e-43 UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1... 179 4e-43 UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylas... 177 9e-43 UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium va... 177 1e-42 UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D... 176 2e-42 UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD 176 2e-42 UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=A... 176 3e-42 UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is ... 176 3e-42 UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchae... 175 7e-42 UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax... 173 2e-41 UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2... 173 2e-41 UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n... 173 2e-41 UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms Rep... 172 3e-41 UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group Re... 172 4e-41 UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 170 2e-40 UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 170 2e-40 UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD 169 3e-40 UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 ... 167 2e-39 UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 ... 167 2e-39 UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP 164 1e-38 UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleo... 164 1e-38 UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9... 162 4e-38 UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 162 6e-38 UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH 161 1e-37 UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=... 160 1e-37 UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mans... 160 1e-37 UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH... 160 1e-37 UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleo... 160 1e-37 UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchae... 160 2e-37 UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP 160 2e-37 UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes R... 159 4e-37 UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistoso... 159 4e-37 UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=... 158 5e-37 UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 ... 157 1e-36 UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-... 157 2e-36 UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF... 157 2e-36 UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylas... 157 2e-36 UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exo... 156 2e-36 UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 2010... 156 3e-36 UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like p... 155 4e-36 UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNP... 154 1e-35 UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA 153 2e-35 UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exorib... 152 4e-35 UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 152 5e-35 UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 co... 152 5e-35 UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharo... 152 6e-35 UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing p... 152 6e-35 UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta Re... 151 9e-35 UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilag... 150 2e-34 UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B... 150 2e-34 UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 150 2e-34 UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodother... 149 4e-34 UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio R... 149 4e-34 UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20... 148 5e-34 UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 ... 148 1e-33 UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 145 4e-33 UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3... 145 6e-33 UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pe... 145 6e-33 UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio ... 145 6e-33 UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thal... 144 9e-33 UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 144 9e-33 UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroid... 144 1e-32 UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 144 1e-32 UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyos... 144 1e-32 UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichop... 144 1e-32 UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridiu... 143 2e-32 UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphil... 143 2e-32 UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptos... 143 2e-32 UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium... 143 3e-32 UniRef50_A8ZTA2 Ribosomal protein S1 n=22 Tax=Deltaproteobacteri... 143 3e-32 UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales Re... 142 4e-32 UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicycloba... 142 5e-32 UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 ... 142 5e-32 UniRef50_B0VI92 30S ribosomal subunit protein S1 (Modular protei... 142 7e-32 UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes Rep... 141 8e-32 UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma ... 141 1e-31 UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7... 141 1e-31 UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1... 140 1e-31 UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_D... 140 1e-31 UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_D... 140 2e-31 UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX... 140 2e-31 UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovib... 140 2e-31 UniRef50_B0KVD5 30S ribosomal protein S1 n=1 Tax=uncultured cand... 140 2e-31 UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovib... 140 2e-31 UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 ... 139 4e-31 UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exo... 139 4e-31 UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae... 139 4e-31 UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensi... 139 4e-31 UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2... 139 4e-31 UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacill... 139 4e-31 UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FA... 139 5e-31 UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium klu... 139 5e-31 UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome... 138 5e-31 UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL 138 6e-31 UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8... 138 6e-31 UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflex... 138 8e-31 UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4... 138 9e-31 UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovib... 138 1e-30 UniRef50_C5ES10 RNA binding S1 domain-containing protein n=2 Tax... 137 1e-30 UniRef50_C1A406 30S ribosomal protein S1 n=1 Tax=Gemmatimonas au... 137 1e-30 UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1... 137 2e-30 UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae... 137 2e-30 UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID... 136 2e-30 UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succino... 136 3e-30 UniRef50_A8ZTZ3 RNA binding S1 domain protein n=1 Tax=Desulfococ... 136 3e-30 UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=... 136 3e-30 UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcace... 136 3e-30 UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria ... 135 4e-30 UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Ta... 135 4e-30 UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID... 135 5e-30 UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglo... 135 5e-30 UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=... 135 5e-30 UniRef50_Q48082 30S ribosomal protein S1 n=129 Tax=Proteobacteri... 135 5e-30 UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=can... 135 7e-30 UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus ... 135 7e-30 UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exo... 135 7e-30 UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonat... 135 8e-30 UniRef50_D0J9D1 30S ribosomal protein S1 n=25 Tax=Bacteria RepID... 135 9e-30 UniRef50_B0CSI5 Predicted protein n=3 Tax=Agaricales RepID=B0CSI... 134 1e-29 UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1... 134 1e-29 UniRef50_A9BGS2 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 134 1e-29 UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Ver... 134 1e-29 UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=... 134 1e-29 UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1... 134 1e-29 UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria Rep... 134 2e-29 UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Con... 133 2e-29 UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus... 133 2e-29 UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblay... 133 2e-29 UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergista... 133 2e-29 UniRef50_D1BMA5 Hydroxymethylbutenyl pyrophosphate reductase n=3... 133 3e-29 UniRef50_C0DB62 Putative uncharacterized protein n=1 Tax=Clostri... 133 3e-29 UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n... 132 5e-29 UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 ... 132 5e-29 UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=... 132 6e-29 UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovi... 131 6e-29 UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus... 131 7e-29 UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 131 9e-29 UniRef50_B8DPH9 RNA binding S1 domain protein n=4 Tax=Desulfovib... 131 9e-29 UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 131 1e-28 UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacill... 131 1e-28 UniRef50_C7LJY0 Putative ribosomal protein S1 n=1 Tax=Candidatus... 131 1e-28 UniRef50_Q6NDP1 30S ribosomal protein S1 n=165 Tax=Proteobacteri... 131 1e-28 UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reducta... 130 2e-28 UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepI... 130 2e-28 UniRef50_C0QM45 RpsA1 n=2 Tax=Desulfobacteraceae RepID=C0QM45_DESAH 130 2e-28 Sequences not found previously or not previously below threshold: >UniRef50_A1UU54 Polyribonucleotide nucleotidyltransferase n=155 Tax=cellular organisms RepID=PNP_BARBK Length = 733 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 387/714 (54%), Positives = 500/714 (70%), Gaps = 4/714 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + ++ +T+ETG +ARQA AV+ + +T V TVV K KP QDFFPLT Sbjct: 1 MFKTHKVEIEWAGRPLTIETGRVARQADGAVVATYGETVVLATVVSAKAPKPDQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 VNYQE+TYA G+IPG +F+RE RPSE ETLI+RLIDRPIRPLF + + N+ QVI +V+ Sbjct: 61 VNYQEKTYAVGKIPGGYFKRESRPSENETLISRLIDRPIRPLFVDDYKNDTQVIVSVIQH 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + NPDI++MI ASAAL+LSGIPF GPI ARVGY N YVLNPT DE+ ESKLDLVVA Sbjct: 121 DLENNPDILSMIAASAALTLSGIPFMGPIAGARVGYCNGHYVLNPTLDEMPESKLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AVLMVESEA LSE+ MLGA+ FG + Q VI I +L + A K ++ PE + Sbjct: 181 GTENAVLMVESEAHELSEEVMLGAITFGQKGFQPVIDAIIQLAEVAAKEPREFIPEDFS- 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDE---TLDENELGEIL 297 L + + E L AY ITDKQ+RY +D IK+E ++ E E L +++ + Sbjct: 240 DLEKTMLKMIEKDLRKAYTITDKQQRYDAIDAIKTEILSKFAPEMEVNCELTADKIATVF 299 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 ++ +VR +L RIDGR+ +R + G+LPRTHGSALFTRGETQALV ATLG Sbjct: 300 KRLQAKIVRWNILDTGKRIDGRDLSTVRPIQSEVGILPRTHGSALFTRGETQALVVATLG 359 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 T+ D Q +D L G +TFL HYNFPP+SVGETG + SP RREIGHG+LA R + ++P Sbjct: 360 TSEDEQYVDLLTGVCKETFLLHYNFPPFSVGETGRLSSPGRREIGHGKLAWRAIHPMLPT 419 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 + FPYT+RVVSEITESNGSSSMA+VCG SLALMDAGVP+ VAGIAMGL+KEG+ +V+ Sbjct: 420 KEAFPYTIRVVSEITESNGSSSMATVCGTSLALMDAGVPLARPVAGIAMGLIKEGERFVI 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDILGDEDHLGDMDFKVAG+++GI++LQMDIKI+GIT++IM++AL QAK R HIL M Sbjct: 480 LSDILGDEDHLGDMDFKVAGTKNGITSLQMDIKIDGITEDIMKIALEQAKDGRNHILNEM 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 +A+ R ++SEF+PRI + I +KI++VIG GG VIR + E+TG I IEDDGT+KI Sbjct: 540 AKALTDARTELSEFSPRIEMMTIPVEKIREVIGSGGKVIREIVEQTGAKINIEDDGTIKI 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+ D + + A I I E EVG +Y G V + +FGAF+ G +GLVHISQ+A K Sbjct: 600 ASPDTKSIETAKSWIHSIVDEPEVGTIYQGTVVKTTEFGAFINFFGSHDGLVHISQLASK 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RV K TD ++ G +V V+++ D +G+IRLS+K +Q+ + + E Sbjct: 660 RVAKTTDVVKEGDKVWVQLMGFDERGKIRLSMKVVDQQTGKEIPQDDLIKTEKE 713 >UniRef50_C9KKD1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD1_9FIRM Length = 689 Score = 809 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 343/688 (49%), Positives = 476/688 (69%), Gaps = 1/688 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + +E G +A+QA AV+V DT V VT + + G DFFPLTV+Y+E Sbjct: 3 RFEMELAGRPLVIENGQLAKQANGAVLVRYGDTVVLVTATASAEPREGVDFFPLTVDYEE 62 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YAAG+IPG F +REGRPS L ARLIDRPIRPLFP+GF N+VQ++ATV+SV Sbjct: 63 KMYAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGFRNDVQIVATVLSVEQDNA 122 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P++ AMIGAS AL++S IPF GPI RVG +ND++V+NPT+++ K S L+L VAG+ A Sbjct: 123 PELAAMIGASCALTVSDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSHDA 182 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 V+MVE+ A L ED +L A++FGHE+ + +++ + + GK + + + V + Sbjct: 183 VMMVEAGANELPEDVILDAILFGHEEIKRLVEFQQGIQADCGKEKSEPKLFLVPHEMEEA 242 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + A+ RL A R DK +R A + + ++T+ L +D+ E+ +H +EK+VV Sbjct: 243 IRDYAKDRLDAAVRNPDKLDRDAHIAEVTTDTMEHFLELYPEMDK-EIAIAIHDLEKSVV 301 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R + + R DGRE + +R + G+LPRTHGS LFTRG+TQ L TLG+ D QV+ Sbjct: 302 RHMITHEKIRPDGREVEEVRPVSCEVGLLPRTHGSGLFTRGQTQILTVTTLGSLGDEQVI 361 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D L E T ++ HYNFP YSVGE + SP RREIGHG LA+R ++ V+P +++FPYT+ Sbjct: 362 DGLGPETTKHYIHHYNFPGYSVGEARPMRSPGRREIGHGALAERALVPVIPSIEEFPYTI 421 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 R+VSE+ ESNGSSSM SVCG++L+LM+AGVPIK V+G+AMGLVKEGD Y +L+DI G E Sbjct: 422 RLVSEVLESNGSSSMGSVCGSTLSLMNAGVPIKRPVSGVAMGLVKEGDQYTILTDIQGME 481 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPR 545 D LGDMDFKVAG+ +GI+A+QMDIK++G+++EI+ AL QAK R ILG M + I+ P Sbjct: 482 DALGDMDFKVAGTTEGITAIQMDIKVDGLSREILSAALQQAKRGRAFILGKMLECIDKPA 541 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 ++S +APR+ TIKI DKI+DVIG GG V++ + +ETG I+I +DG + I + D E Sbjct: 542 AELSPYAPRVETIKIKVDKIRDVIGSGGKVVKKIIDETGVDIDIHEDGNIFITSNDAEGM 601 Query: 606 KHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 K A + IE+I E+EVG +YTG+VTR++ FGAFV + GKEGL HISQ+A RVEKV D Sbjct: 602 KKAKQMIEDIVREVEVGEIYTGRVTRLMKFGAFVEVLPGKEGLCHISQLAKHRVEKVEDV 661 Query: 666 LQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 +Q+G ++ VKV+E+D +GRI LS K Sbjct: 662 VQVGDQLQVKVVEIDDKGRINLSHKAVL 689 >UniRef50_C1L2N7 Polyribonucleotide nucleotidyltransferase n=48 Tax=Bacteria RepID=PNP_LISMC Length = 723 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 355/712 (49%), Positives = 489/712 (68%), Gaps = 4/712 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M V ++ T+++E G +A+QA+ A ++ DT V VG KK +PG DFFPLT Sbjct: 1 MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPG-DFFPLT 59 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 VNY+E+ Y+ G++PG F +REGRPS+ TL ARLIDRPIRPLF EGF NEVQ+ +TV SV Sbjct: 60 VNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSV 119 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + +P++ AM+G+S AL +S IPF GPI VG I+ +YV+NPT ++ ++S + L VA Sbjct: 120 DQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVA 179 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT A+ MVE+ A+ +SE+ ML A++FGHE+ + + + +++ GK + + + + Sbjct: 180 GTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDP 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA---EDETLDENELGEIL 297 L A V A +E ++ A + +K+ R A ++ +K E + + A E+E +E+ IL Sbjct: 240 ELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEILESYKAKELENEAEILSEVAHIL 299 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 IEK+ +R + + R DGR+ + IR L G+LPR HGS LFTRG+TQAL TL Sbjct: 300 EMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLA 359 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 R+ Q++D L E F+ HYNFP +SVGETG +P RREIGHG L +R + V+P Sbjct: 360 PLREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPS 419 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 ++FPYT+R+VSE+ ESNGSSS AS+CG++LA++DAGVPIKA VAGIAMGLVK GD+Y + Sbjct: 420 EEEFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTI 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G EDH GDMDFKVAG++DGI+ALQMDIKI+G++++I+ AL QAK RLHIL + Sbjct: 480 LSDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHL 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I+APR ++S +AP+I T+ I P+KIKDVIG GG I A+ +ETG I+IE DGTV I Sbjct: 540 TSTISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIDETGVKIDIEQDGTVYI 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+ D + AI IE+I E+EVG VYTGKV RI FGAFV + G +GLVHIS++A + Sbjct: 600 ASQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHE 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 RV KV D L++G EV VKV+EVD+QGR+ LS K E+ + + P AE+ Sbjct: 660 RVGKVEDILKLGDEVTVKVIEVDQQGRVNLSRKALLEKKEQPEGDKKPQAEK 711 >UniRef50_B9KYR9 Polyribonucleotide nucleotidyltransferase n=53 Tax=Bacteria RepID=PNP_THERP Length = 790 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 351/700 (50%), Positives = 473/700 (67%), Gaps = 11/700 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 R + +T+ETG +A QA AV+V +T V TVVG K+ G DFFPLTV Y+ Sbjct: 6 HERSIEIAGRLLTIETGRVAEQADGAVLVRYGETVVLTTVVGAKQPVEGIDFFPLTVEYE 65 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAG+IPG FFRREG+PSE L ARL DRPIRPLFP+G+ NEVQVI+TV+S + + Sbjct: 66 EKMYAAGKIPGGFFRREGKPSEAAILAARLTDRPIRPLFPKGYRNEVQVISTVLSADQEN 125 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 PD++++IGASAAL+LS IP+ GP+GA R+G ++ + V+NPT +L ES++D+VVAGT Sbjct: 126 EPDVLSIIGASAALTLSDIPWYGPVGAVRIGELDGELVINPTSHQLLESRMDIVVAGTAD 185 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 A+LMVE +A +SED+ + AVV H++ + ++ EL AGKP+ ++ P N L Sbjct: 186 AILMVEGQANEISEDRFIEAVVRAHQEIKRIVAVQLELQAVAGKPKREFVPPQENVELKQ 245 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETL---------DENELGE 295 ++A RL +A DK R ++ E IA + + E+G+ Sbjct: 246 QIADYLGDRLREAVFNPDKTLRVQATAALREEVIAHFVPNEPLAIGTPQSGLPTAKEVGD 305 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 + ++ K +VR +L R DGR+ D IR + ++ G+LPR HGSALFTRG+TQ L T Sbjct: 306 LFDSLVKELVRRTILEQGERPDGRKPDEIREIWIQVGLLPRPHGSALFTRGQTQVLTVCT 365 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LGT + Q LD L E T ++ HYNFPP+S GE + P RR+IGHG LA+R +LAV+ Sbjct: 366 LGTKEEEQFLDSLGIEETKRYMHHYNFPPFSTGEIRRLRGPSRRDIGHGALAERALLAVL 425 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GD 473 P D+FPYT+R+VSE+ SNGS+SMASVCG+SLALMDAGVPI+ VAG+AMGLV + Sbjct: 426 PSEDEFPYTMRLVSEVLSSNGSTSMASVCGSSLALMDAGVPIRKPVAGVAMGLVTDQTTG 485 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 Y +L+DI G ED LGDMDFKVAG+RDGI+A+QMDIK+ GIT EIM+ AL QA+ RL I Sbjct: 486 RYTILTDIQGIEDALGDMDFKVAGTRDGITAIQMDIKVMGITPEIMRDALEQARRGRLFI 545 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDG 593 L M + I+APR ++S +APRI IKI P++I +VIG GG VIRA+ E+TGT I IE+DG Sbjct: 546 LDKMSEVIDAPRPEMSPYAPRILRIKIKPEQIGEVIGPGGRVIRAIQEQTGTKISIEEDG 605 Query: 594 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 TV I+A + + A+ A+R IE +T EVG ++ G+V I+ GAFV I GK+G +HIS+ Sbjct: 606 TVFISAANEDAARRAVREIERLTRVPEVGEIFYGRVVTIIPSGAFVEILPGKDGFLHISE 665 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 IA +RV V D L++GQE+ V V+ V G+I LS K Sbjct: 666 IAPERVRSVEDVLKVGQEINVMVIGVRPDGKINLSRKALL 705 >UniRef50_A5VCY9 Polyribonucleotide nucleotidyltransferase n=438 Tax=cellular organisms RepID=PNP_SPHWW Length = 774 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 363/709 (51%), Positives = 496/709 (69%), Gaps = 1/709 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + + Q+G T+TLETG +ARQA AV+ ++ +T V V + K GQDFFPLT Sbjct: 1 MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ +++GRIPG FF+RE +E ETL++RLIDRPIRPLFPEGF NE+ VIA V+S Sbjct: 61 VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + PDI+AMI ASAAL++SG+PF GPIGAARVGY + +Y+LNPT ++ LDLVVA Sbjct: 121 DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYLLNPTDADVAAGDLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T AV+MVESEA+ LSE+ MLGAV+F H+ Q VI+ I +L +++ K W+ P+ Sbjct: 181 ATHDAVMMVESEAKELSEEVMLGAVMFAHKASQDVIKAIIKLAEKSAKDPWEMAPQADLS 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 A ++ L ++ AY++T+K R + ++ +++ + ++ + Sbjct: 241 AAKTKLKKLVGKDITAAYKLTNKSARSSALNEARAKAKEAFADATPQDQMAAIK-LVKKL 299 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +VR+ +L RIDGR+ +R + LPR HGSALFTRGETQ++ T TLGT Sbjct: 300 EAEIVRTAILKDGRRIDGRDTRTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKE 359 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 Q++D L G R + F+ HYNFPPYSVGE G G+P RRE+GHG+LA R + AV+P ++ Sbjct: 360 SEQMIDGLNGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPTKEE 419 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 FPYT+R+ S+ITESNGSSSMA+VCG SLA+MDAGVPIK V+GIAMGL+ EG ++ V+SD Sbjct: 420 FPYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDFAVISD 479 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 ILGDEDHLGDMDFKVAG+ +GI+ +QMDIKI GIT+EI + AL QAK R HILG M +A Sbjct: 480 ILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALLQAKEGRAHILGEMAKA 539 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 ++ R ++S APRI T+ + DKI+D+IG GG +IR + TG ++I+DDGTVKI+++ Sbjct: 540 LDHTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSS 599 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 D + + A I I AE EVG++YTGKV +VDFGAFV GGK+GLVH+S+I ++RVE Sbjct: 600 DTAQIEAARNWIIGIVAEPEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVE 659 Query: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 KV D L GQEV VKVLE+D +G++RLS++ +++ P E+ Sbjct: 660 KVADALSEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELPDTRPPREE 708 >UniRef50_Q3ABA6 Polyribonucleotide nucleotidyltransferase n=111 Tax=Bacteria RepID=PNP_CARHZ Length = 731 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 358/720 (49%), Positives = 478/720 (66%), Gaps = 18/720 (2%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 + ++ + L G +A QA+ +V+VS DT V VT G K+ + G DFFPLTV+ Sbjct: 6 QILEKEIMIAGRPLKLTAGKVATQASGSVLVSYGDTVVLVTATGSKEPREGIDFFPLTVD 65 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+ER YA G+IPG F +REGRPSE L ARLIDRPIRPLFP+GF N+V ++ATV+SVN Sbjct: 66 YEERFYAVGKIPGGFIKREGRPSEKAILSARLIDRPIRPLFPKGFKNDVHIVATVLSVNQ 125 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 P+I AM GASAAL+LS +PF GPIGA VG + D+ V+NPT ++ ++S+L LVVAGT Sbjct: 126 DNPPEIAAMNGASAALTLSHLPFLGPIGAVVVGLVEDELVINPTIEQAEKSRLHLVVAGT 185 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA-----GKPRWDWQPEP 237 AV+MVE+ AQ + E+ M+ A+ GHE+ + ++ I E +EA K + + E Sbjct: 186 RDAVMMVEAGAQEVPEEIMIEAITRGHEEVKKIVAFIEEFREEALKLGLAKEKMEVVVEE 245 Query: 238 VNEALNARVAALAEARLSDAYRI-----TDKQERYAQVDVIKSETIATLLAEDETLDENE 292 L V A A L +A +KQER ++ +K E L E Sbjct: 246 K-AELKEAVTAEAYPLLKEAIEKIIAEKFNKQERDEYLENLKKELTTKFLETYPEE-ELT 303 Query: 293 LGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALV 352 + IL +I+K +VR ++L RIDGR+ D +R + G+LPRTHGS LFTRG+TQ L Sbjct: 304 IKGILDSIQKEIVRQKILKEGIRIDGRKTDEVRPIWCEVGLLPRTHGSGLFTRGQTQVLS 363 Query: 353 TATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVL 412 TLG D Q+LD+L E + F+ HYNFPPYSVGE + P RREIGHG LA+R + Sbjct: 364 IVTLGAVGDVQILDDLGIEESKRFMHHYNFPPYSVGEVRPMRGPGRREIGHGALAERALE 423 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG 472 V+P + FPYT+R+VSE+ ESNGS+SM SVCG++LALMDAGVPIKA VAG+AMGL+KEG Sbjct: 424 PVIPPEEVFPYTIRIVSEVLESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIKEG 483 Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 D +L+DI G ED LGDMDFKVAG++DGI+ALQMDIKI G+T++I+ AL QA+ R+H Sbjct: 484 DEVAILTDIQGIEDALGDMDFKVAGTKDGITALQMDIKIAGVTRDILTKALAQAREGRMH 543 Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD 592 ILG M + I+ PR ++S +APRI ++P+KI+D+IG GG +I+ + +ETG I+IEDD Sbjct: 544 ILGKMLEVISEPRKELSPYAPRIIFTTVDPEKIRDIIGPGGKIIKKIIDETGVKIDIEDD 603 Query: 593 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI------GGGKE 646 G + IAA D E + A+ IE +T EIEVG+VY GKVTRI DFGAFV + GKE Sbjct: 604 GRIFIAAVDKEAGEKALNIIENLTKEIEVGKVYLGKVTRIADFGAFVEVVPGVLGLPGKE 663 Query: 647 GLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPA 706 GLVHISQ+A RV++V D ++ G ++ VK + D QGR++LS K+A + P Sbjct: 664 GLVHISQLAHSRVKRVEDVVKEGDQILVKAIGYDNQGRLKLSRKDAIPAEEVREKKNPPI 723 >UniRef50_C1A3Y1 Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteria RepID=PNP_GEMAT Length = 732 Score = 782 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 342/708 (48%), Positives = 470/708 (66%), Gaps = 5/708 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 + + + +ETG MA+QA + +V +T V V + P FFPLTV Y Sbjct: 1 MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENQSP-LPFFPLTVEY 59 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +E+TYAAG+IPG F +REGRP + E L AR+IDR IRPLFPEGF NEVQV V+S + + Sbjct: 60 KEKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFKNEVQVFIYVISADQE 119 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 + D++A++ AS AL+ S IPF GPI RVG + +VLNPT +L S L+LVVAG++ Sbjct: 120 NDADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLGFSDLELVVAGSK 179 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 +++MVE + +SE+ +L ++ H+ + +I EL+ + P+ W E + Sbjct: 180 DSIVMVEGGSLEVSEEDVLESLRLSHDGIRELIGMQEELLAKVRVPKMSWVKAEAPEGIT 239 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 RV LA R+ +A DK R V+ K E LL E + ++G +L +E + Sbjct: 240 TRVKELASGRIREALNQKDKHTRIEAVERTKKELAEGLLVEFPD-NAKDIGNLLGDVEYH 298 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 +RS+VL + R+DGR+KD +R + + T VLPR HGSALFTRG+TQALV ATLGTA+DAQ Sbjct: 299 ELRSQVLDTQLRVDGRKKDEVRAISIDTSVLPRAHGSALFTRGQTQALVAATLGTAKDAQ 358 Query: 364 VLDELM--GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 LD + GE T +F+ HYNFPP+S GE + RREIGHG LA+R + V+PD F Sbjct: 359 RLDSIKEPGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERALQGVLPDFADF 418 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 PYT+R+VS++ ESNGSSSMASVCG SL+L DAGVP+KAAVAG+AMGL+KEG+ Y +L+DI Sbjct: 419 PYTIRIVSDVLESNGSSSMASVCGGSLSLFDAGVPLKAAVAGVAMGLIKEGERYAILTDI 478 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 LG EDHLGDMDFKVAG++DGI+++QMDIKIEG+ +IM+ AL+QAK RLHILG M++A+ Sbjct: 479 LGTEDHLGDMDFKVAGTKDGITSIQMDIKIEGLDIKIMEEALSQAKAGRLHILGEMDKAL 538 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 APR D+S++APRI T++I DKI ++IG G IR + +ETG + +EDDGTV IAA Sbjct: 539 AAPREDLSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQDETGAELSVEDDGTVTIAAVG 598 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 G+ + A + + ITAE VG Y G V + FGAFV I G E L+H+S++ +RVEK Sbjct: 599 GDSMERAKQMVMAITAEPVVGETYEGTVKTVTAFGAFVEIMPGNEALLHVSEMRWERVEK 658 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 D ++ G V VK+++ D +GR+RLS+K + E P +E+ Sbjct: 659 PEDVVKKGDRVTVKLVDRDERGRLRLSMKALLPKP-EGMPDEPPQSER 705 >UniRef50_Q1IQ54 Polyribonucleotide nucleotidyltransferase n=96 Tax=Bacteria RepID=PNP_ACIBL Length = 815 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 354/704 (50%), Positives = 474/704 (67%), Gaps = 5/704 (0%) Query: 3 NPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 P V ++ G +++ ETG +A+QA + +V + V T + G DFFPLTV Sbjct: 4 EPKVATVEFTGGKSLSFETGKLAKQAHGSAIVRSGQSVVLATACANADPREGIDFFPLTV 63 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+E TYA GR PG F +REGRPSE E L +R IDRPIRPLFPEGF E QVIA V+S + Sbjct: 64 DYREYTYAGGRFPGGFIKREGRPSEKEILTSRQIDRPIRPLFPEGFRCETQVIAMVLSAD 123 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + +PD+ + GASAAL++S IPFNGPIGA RVG I Q ++NPT DE++ SKL+++V G Sbjct: 124 SENDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTYDEMRASKLNIMVVG 183 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T ++M+ES A +E++++ A+ FGH + + + I++L KE GK + P +++ Sbjct: 184 TAEGIVMIESGAHEATEEEVVSAIEFGHGEIKKICAVISKLAKEVGKTKRTVAPVELDQP 243 Query: 242 LNARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILHA 299 + A L+DA K E YA+V IKS+ + A+D+ +LG+ Sbjct: 244 YLDGLRKKIGADLADALNTEKYPKSESYAKVKEIKSKLKEEIPADDDAA-LKKLGKYYEL 302 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 + +++ R +V + R DGR D IR + + VLPRTHGSA+FTRGETQALVT TLGT Sbjct: 303 LREDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTG 362 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 D Q ++ GE F+ HYNFPP+SVGE + RREIGHG LA+R + AV+P D Sbjct: 363 DDMQRMEGFEGEAKKRFMLHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSED 422 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 K+PY +RVVS+I ESNGSSSMAS+CG SL+LMDAGVP+KA VAGIAMGLVKEGD+Y +L+ Sbjct: 423 KWPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPLKAPVAGIAMGLVKEGDDYAILT 482 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DI G EDH GDMDFKVAG+ GI+ALQMDIKI GIT +IM+ AL QA+ RL IL M + Sbjct: 483 DIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRGRLFILDKMNE 542 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 I +PR ++SEFAPR +T++I DKI+D+IG GG VIR + E TG I++ED G V +A+ Sbjct: 543 VIQSPRTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDSGKVNVAS 602 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 +D E AK A++ I +ITA EVG+ Y G VTR+ DFGAFV I G +GL+HIS++A+ R+ Sbjct: 603 SDQEAAKKALKMIGDITATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEHRI 662 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 + V D L G +V VKVL VD RI+LS K ++ + A E Sbjct: 663 KDVKDELHEGDQVLVKVLAVD-GNRIKLSRKAVLKEQRAKMATE 705 >UniRef50_A9B8G1 Polyribonucleotide nucleotidyltransferase n=38 Tax=Bacteria RepID=PNP_HERA2 Length = 777 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 331/712 (46%), Positives = 464/712 (65%), Gaps = 9/712 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + +T+E G +A+ A AV+V DT + V + + G DFFPLTV+Y+ Sbjct: 7 HSVTVELAGRPLTIEAGRVAQLANGAVLVRYGDTVLLAAVTASAEPRDGIDFFPLTVDYE 66 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAG+IPGSFF+REGRP+E L +RL DRP+RPLFP+G+ N+VQV T +S + Sbjct: 67 EKMYAAGKIPGSFFKREGRPTETAILTSRLTDRPLRPLFPKGYYNDVQVSITTLSTDQVN 126 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 +P +A+IGASAAL +S IPF P+GA ++G+I+ + +NP ++ S+LDLVVAGT Sbjct: 127 DPGPLAIIGASAALVISDIPFAAPVGAVQMGHIDGVFAVNPVMGLMENSRLDLVVAGTSE 186 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 AV+MVE+ A L+E +ML AV GHE Q VIQ EL ++ GKP+ ++ V+ +L Sbjct: 187 AVMMVEASAYELTEAEMLEAVKRGHEAMQAVIQAQLELAEKCGKPKKEFVAPVVDTSLQD 246 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL----LAEDETLDENELGEILHAI 300 + A R A +DK R A D ++++ + E+ + + A+ Sbjct: 247 EIKAWMGNRFLQALNNSDKAAREAATDSLRTDVLEQFSAGVAEEELAARVKAVTKNYDAL 306 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 K+ VR+ +L R+DGR+ + IR + V GVLPR HGS LFTRG+TQ L ATLG+ Sbjct: 307 VKDEVRASILEQGIRVDGRKVNEIRPIAVDVGVLPRVHGSGLFTRGQTQVLTVATLGSPG 366 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 D Q LD+L E T ++ HYNFP +S GE P+RR+IGHG+LA+R ++ V+P+ DK Sbjct: 367 DEQRLDDLGIETTRHYMHHYNFPAFSTGEARPSRGPRRRDIGHGKLAERALVPVLPEKDK 426 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--NYVVL 478 FPYT+R+VSE+ SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ + + VL Sbjct: 427 FPYTMRLVSEVLASNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKEAGQFSVL 486 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 +DI G ED LGDMDFKVAG+ GI+ALQMDIK GIT EIMQ A QA+ R+ IL M Sbjct: 487 TDIQGLEDALGDMDFKVAGTTAGITALQMDIKTTGITYEIMQQAFEQARQGRVFILDKMN 546 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + IN R DIS+FAPRI T++I+P KI +IG GG IR++ E+TG I++EDDG V + Sbjct: 547 EIINTARNDISQFAPRIITLQIDPSKIGALIGPGGKTIRSIIEQTGAQIDVEDDGRVFVT 606 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 D + A+ A IE +T E +VG ++TGKV RI+ +GAFV + GK+G+VH+S++ +KR Sbjct: 607 TPDADGARMAQSLIEGLTREAKVGEIFTGKVVRIMPYGAFVNVLPGKDGMVHVSELDEKR 666 Query: 659 VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 VE V D +++G E+ V V++V+ G++ LS + + A ++ + Sbjct: 667 VENVEDVVKIGDELTVMVIDVEPGTGKLSLSRRAIL--TGETAEQRKSSSSK 716 >UniRef50_Q0AYI2 Polyribonucleotide nucleotidyltransferase n=70 Tax=Bacteria RepID=PNP_SYNWW Length = 703 Score = 777 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 327/695 (47%), Positives = 451/695 (64%), Gaps = 7/695 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + + + +E G +A+QA A ++ DT V VT K+ + G DFFPLTV+Y+ Sbjct: 4 KKYQMEVAGRPLIVEIGQVAQQANGAALMRYGDTVVLVTATAAKQPREGIDFFPLTVDYE 63 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YA G+IPG F +REGR + TL ARLIDRPIRPLFP+GF NE+ V+AT++SV Sbjct: 64 EKQYAVGKIPGGFIKREGRATAQATLSARLIDRPIRPLFPKGFRNEIHVVATILSVEKDN 123 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 PD+ A+ GAS ALS+S IPF GP+ A VG ++ + ++NPT ++ ++S L L VAGT+ Sbjct: 124 APDVTAITGASVALSISDIPFAGPVAAVIVGLVDGELIINPTVEQHQKSDLHLAVAGTKE 183 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 A++MVE A + E+ M A+ F HE+ + ++ +++E G + + ++E + Sbjct: 184 AIMMVEGGANEVPEETMRDAIFFAHEEIKKIVDFQENIIREVGLSKMQVEIPILDEEIKK 243 Query: 245 RVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNV 304 V A +A + DK+ R Q+D + + E + ++ K V Sbjct: 244 AVVEFATPLFEEAVKNPDKKTREDQMDSSQKSVLQHFTESYPEE-EKLIADVSDETMKAV 302 Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQV 364 VR L R+DGR+ D IR + G LPR HGS LFTRG+TQ L TLG + Q Sbjct: 303 VRKMALEEGERVDGRKLDEIRKVSCEVGFLPRPHGSGLFTRGQTQVLSVTTLGAISEEQR 362 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 LD L E ++ HYNFPPYS GET + P RREIGHG LA+R +LAV+P ++FPYT Sbjct: 363 LDGLGIEEKKRYIHHYNFPPYSTGETKPMRGPGRREIGHGALAERALLAVIPSEEEFPYT 422 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +RVVSE+ ESNGSSSM SVCG++L+LM AGVPIKA V+GIAMGLVKEG+ + ++SDI G Sbjct: 423 IRVVSEVLESNGSSSMGSVCGSTLSLMHAGVPIKAPVSGIAMGLVKEGERFAIMSDIQGI 482 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 ED LGDMDFK+AG+ G++ALQMDIKI G+ +EI++ AL QA+ R+ IL M +AI+ P Sbjct: 483 EDALGDMDFKLAGTEKGVTALQMDIKITGVNREIVEAALKQAREGRMFILKKMLEAIDKP 542 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 ++S +AP++ ++I+PDKI++VIG GG I + +ETG I+IEDDG++ I ATD E Sbjct: 543 NEELSPYAPQMIRMQIDPDKIREVIGPGGKTIHKIVDETGCKIDIEDDGSLFIMATDEEA 602 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK------EGLVHISQIADKR 658 AK A +E I AE+EVG+ Y G V RI+DFGAFV I G EGLVHISQ+A++R Sbjct: 603 AKKARFFVESIVAEVEVGKTYMGTVKRIMDFGAFVEIIPGVLGTSGKEGLVHISQLAEER 662 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 V KV D + +G ++ VKV E+DRQGR+ LS K Sbjct: 663 VNKVRDVVDIGDQILVKVTEIDRQGRVNLSRKAVL 697 >UniRef50_D1PLM8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLM8_9FIRM Length = 759 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 315/694 (45%), Positives = 446/694 (64%), Gaps = 10/694 (1%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + +ETG M A + MV DT V V +K + G DFFPL+V ++E Sbjct: 58 KFETTFAGRPFVVETGKMCGLANGSAMVRYGDTCVLCNVTMSEKPREGVDFFPLSVEFEE 117 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 + YAAGRIPGSF RREGRP E L +R++DRPIRPLFP+ N+V V TV+S++P + Sbjct: 118 KLYAAGRIPGSFMRREGRPGEHAILSSRVVDRPIRPLFPKDMRNDVCVTMTVMSLDPDNS 177 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 +I M GAS A+++S IP+NGPI VG ++ + VLNPT+++ + S L L +A +E Sbjct: 178 AEITGMNGASLAIAMSDIPWNGPIAGVFVGLVDGEIVLNPTKEQREHSDLSLTLAASEEK 237 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 ++M+E+ A + E M+ A+ GH + + ++ IN +V E GKP+ + P ++ L A Sbjct: 238 IVMIEAGANEVDEATMMEAIKAGHAEIKKMLAFINSIVAEIGKPKKTFTPVELDHGLLAD 297 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V A + A DK R A + I AE L ++ I + ++K VV Sbjct: 298 VYAKHLDEVKAAMDTDDKNVRDAALLPIMDAI----AAEHPELTAADIDLISYKLQKKVV 353 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R+ +L R+DGR + IR L G+LPR HGS +FTRG+TQ L TLG+ +DAQ++ Sbjct: 354 RTWLLEDGKRVDGRGINEIRPLAAEVGLLPRVHGSGMFTRGQTQVLTVCTLGSTKDAQLM 413 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D+L + ++ HYNFPPYSVGE SP RREIGHG LA+R ++ V+PD +FPYT+ Sbjct: 414 DDLSDTQYKRYIHHYNFPPYSVGEARAPRSPGRREIGHGNLAERALVPVLPDQSEFPYTI 473 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD-----NYVVLSD 480 R VSE+ SNGS+S AS+CG++LALMDAGVPIKA VAGI+ GL+ +GD ++ + D Sbjct: 474 RCVSEVLSSNGSTSQASICGSTLALMDAGVPIKAPVAGISCGLITDGDPLHGGRWMTMLD 533 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL-GVMEQ 539 I G ED GDMDFKV G+R GI+A+QMDIK++G+T EI++ AL + + RL+IL +++ Sbjct: 534 IQGVEDFHGDMDFKVGGTRRGITAIQMDIKVDGLTYEIVEEALEKCRKGRLYILDEIIKP 593 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 I PR ++S +AP++ ++ I DKIKDVIGKGG VI+ + I+IE+DG V I+A Sbjct: 594 VIAEPRKELSPYAPKMFSMMIPVDKIKDVIGKGGKVIQEMCANFNCKIDIEEDGHVFISA 653 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D E AK AI I+ I + E+G +Y G+VTR+++FGAFV I GKEGLVHIS++ D RV Sbjct: 654 VDQEDAKRAIATIKTIVEDPEIGAIYKGRVTRLMNFGAFVEIAPGKEGLVHISKLDDHRV 713 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 E V D + +G + V V ++D+QGRI LS K+A Sbjct: 714 EHVEDVVAVGDPIFVMVTDIDQQGRINLSRKDAL 747 >UniRef50_A5URV5 Polyribonucleotide nucleotidyltransferase n=11 Tax=Bacteria RepID=PNP_ROSS1 Length = 747 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 335/697 (48%), Positives = 462/697 (66%), Gaps = 6/697 (0%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 + T+TLE G A QA AV+V DT + T V K+ + DFFPLTV+ Sbjct: 5 QIHSVSMELAGRTLTLEAGRFAEQANGAVVVRYGDTMLLATAVASKEPRADADFFPLTVD 64 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E+ YAAG+IPGSFF+REG+P++ L ARL DRP+RPLFPEG+ NEVQ+I T S++ Sbjct: 65 YEEKMYAAGKIPGSFFKREGKPTDSAILTARLTDRPLRPLFPEGYRNEVQIIVTTFSIDM 124 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 +P +A+IGASAAL++S IPF GP+GA +VGYI+ + +NP ++ S LDLVVAGT Sbjct: 125 VNDPAPLAIIGASAALAISDIPFLGPVGAVQVGYIDGKVQINPEMPDMPNSDLDLVVAGT 184 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + AVLMVE+ A+ L ED ML A++ GH+ + + NELV+ AG+P+ ++ P PV+ +L Sbjct: 185 KDAVLMVEAGAKELPEDLMLEAIIQGHQVCKQICDLQNELVRLAGRPKREFVPPPVDTSL 244 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE----NELGEILH 298 + RL +A +K R AQ + +K E IA A++ + + Sbjct: 245 EEAIQQWLGNRLYEAITDPNKMVRDAQTEALKQEVIAHFTADEPEEELEARIAAVSTAFE 304 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + VR +L R+DGR IR + + G++PR HGS LFTRG+TQ L ATLG+ Sbjct: 305 NLLYEEVRRMILERGERVDGRGPKDIRPISIEVGLIPRVHGSGLFTRGQTQVLTLATLGS 364 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 + Q LD+L E T ++ HYNFPP+S GE +GSP+RR+IGHG LA+R +LAV+P Sbjct: 365 PAEEQRLDDLGIETTKRYIHHYNFPPFSTGEVRRLGSPRRRDIGHGALAERSLLAVLPSK 424 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-YVV 477 ++FPYT+R+VSE SNGSSSMASVCG+SLALMDAGVPIKA VAG+AMGL+ D + V Sbjct: 425 EEFPYTMRLVSETLSSNGSSSMASVCGSSLALMDAGVPIKAPVAGVAMGLITGKDGRWRV 484 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DI G EDHLGDMDFKVAG+ G++ LQ+DIK GIT EIM+ A QA+ RL+IL M Sbjct: 485 LTDIQGIEDHLGDMDFKVAGTAKGVTGLQLDIKTTGITYEIMREAFAQAREGRLYILDKM 544 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I+ PR ++S +APRI T++INP+KI +IG GG +R +TE TG I+IE+DG V I Sbjct: 545 NAVISEPRKELSPYAPRIITLQINPEKIGALIGPGGKTVRGITEATGAQIDIEEDGRVYI 604 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 + D A+ A+ +E +T EI+VG ++ GKV RI+ FGAFV + GK+G+VH+S++ Sbjct: 605 STPDAAAAQQAVAMVEALTREIKVGDIFLGKVVRIMPFGAFVNLAPGKDGMVHVSELDVG 664 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 RVE V D ++MG E+ V V+ ++ G++ LS + Sbjct: 665 RVENVEDVIKMGDEINVMVIGIEPGTGKVSLSRRALL 701 >UniRef50_B3EMN6 Polyribonucleotide nucleotidyltransferase n=12 Tax=Bacteria RepID=PNP_CHLPB Length = 734 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 341/732 (46%), Positives = 469/732 (64%), Gaps = 25/732 (3%) Query: 5 IVRKFQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK-PGQDFFPLTVN 62 I ++ G +T+ETG MA+QA A +V M DT V TVV + P QDFFP+ V Sbjct: 3 IRKEIDLGDGKVITIETGKMAKQADGATIVRMGDTMVIATVVSSRTPPSPNQDFFPMQVE 62 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E+ YAAG+ PG F +RE RPSE E L ARLIDR +RPLFP G+ + Q+I +V+S + Sbjct: 63 YREKYYAAGKFPGGFIKRESRPSEKEILSARLIDRALRPLFPNGYYQDTQIIISVISSDQ 122 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + D++ I ASAA+ +S IPF + RVG IN ++V+NPT +EL +S +D+ + GT Sbjct: 123 LNDADVLGGIAASAAIMVSDIPFANSMSEVRVGRINGEFVINPTINELAQSDIDISIGGT 182 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + M+E E +SE +ML A+ FGHE + + +++ E KP+ + + L Sbjct: 183 NDTICMLEGEMNEISEAEMLEAIRFGHEAIKKICSLQDDIAAEVNKPKRSFLAIDAPDEL 242 Query: 243 NARVAALAEARLSD-AYRITDKQERYAQVDVIKSETIATLLAEDETL------------- 288 + EA L + AY K+ER + + +L + Sbjct: 243 KESIKEACEAPLKELAYMPLAKEERAEKTTAVYKSITEQILGRYKNEITAEDIAADPSKA 302 Query: 289 ---DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTR 345 +E + +HAIEK V+R +L R+DGR+ + +R + + G++PR HGSALFTR Sbjct: 303 LYLNEQIISGHIHAIEKQVMRHMILDDAKRLDGRKLEEVRPISIELGLIPRAHGSALFTR 362 Query: 346 GETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGR 405 GETQALV TLGT +DAQ++D L+ + F+ HYNFPP+SVGETG VG RREIGHG Sbjct: 363 GETQALVVLTLGTKKDAQMIDTLLDDTEKRFMLHYNFPPFSVGETGRVGGVGRREIGHGN 422 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 LA+R V V+P +FPYT+R+VSEI ESNGSSSMASVCGA+LA MD GVP+ V+GIA Sbjct: 423 LAERAVKKVVPSESEFPYTIRLVSEILESNGSSSMASVCGATLAAMDGGVPLTKPVSGIA 482 Query: 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 MGL+KE DNY VLSDILG+EDHLGDMDFKVAG+RDGI+A QMDIKI+G+ I++ AL Q Sbjct: 483 MGLIKEDDNYAVLSDILGNEDHLGDMDFKVAGTRDGITACQMDIKIDGLDYHILEKALEQ 542 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 585 +K RLHIL M ++I PRG+I ++AP++ TI++ D I +IGKGG IR++TEETG Sbjct: 543 SKNGRLHILDKMTESIADPRGEIGQYAPKLSTIQVPVDAIGMIIGKGGETIRSITEETGA 602 Query: 586 TIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGG 644 I ++DDGTV I++ +GE A AI I+ + ++ EVG +Y GKV I D GAFV I Sbjct: 603 QINVDDDGTVTISSPNGESAAAAIETIKTLISKPEVGTIYMGKVKDIREDLGAFVEILPR 662 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ---GRIR--LSIKEATEQSQPA 699 +GLVHIS+IA +RV KV+D+L+ G V VK++++ + G+IR LSIK + + Sbjct: 663 TDGLVHISEIARERVNKVSDHLKQGDRVKVKLIDIRKDQRSGKIRYALSIKALLDMPAES 722 Query: 700 AAPEAPAAEQGE 711 A + EQ + Sbjct: 723 ANGPSAQEEQNQ 734 >UniRef50_Q6MDI2 Polyribonucleotide nucleotidyltransferase n=17 Tax=Chlamydiales RepID=PNP_PARUW Length = 697 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 328/697 (47%), Positives = 450/697 (64%), Gaps = 2/697 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + G + ETG +ARQA AV+V +T VF T A DF PL V Sbjct: 1 MQRETISVPVGAQEIIFETGKIARQAGGAVVVRCGETVVFTTACAAPNADSTTDFLPLRV 60 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +YQE+ +AG+ G F +REGRP+E E L++RLIDRPIRP+F EG+ NEVQ+++ V S + Sbjct: 61 DYQEKFSSAGKTLGGFIKREGRPTEKEVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYD 120 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 +P+ +A+ GASAAL +S IP P+GA R+G+I+ Q+++NPT ++ K+SKLDL++AG Sbjct: 121 GINSPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTIEQQKQSKLDLLIAG 180 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 TE AVLM+E L+EDQ+L A+ GH + + Q + + + GKP+ + + Sbjct: 181 TEEAVLMIEGFCDFLTEDQVLEAIEIGHRSIKTICQTLEQWRAKVGKPKNRETLRQLPKE 240 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDET--LDENELGEILHA 299 L A V ++A L A RI +KQ+R + + L+ E+E + ++ Sbjct: 241 LYADVESIANPLLEKALRICEKQKREEALAEVTKAVNDRLMPENEEPKYPAKHIAYVIKD 300 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 + ++R +L R DGR IR +D+ +LPR HGS+LFTRGETQAL TLG A Sbjct: 301 VSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPRAHGSSLFTRGETQALAVCTLGGA 360 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 AQ ++L GE + F Y+FPPYSVGE G VG+P RREIGHG+LA+R ++AV+P + Sbjct: 361 SMAQRFEDLEGEGNNRFYLQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKE 420 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 +FPYT+R+ S ITESNGSSSMA+VCG LALMDAGV IK VAGIAMGL+ E + +++LS Sbjct: 421 QFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAIKRPVAGIAMGLILENERFIILS 480 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DILG ED LGDMDFKV G ++GI+A QMDIK+EGIT EIM+VAL QAK R+HIL M Sbjct: 481 DILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEGRVHILNKMLA 540 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 +G++S +APRI TI+I P KI VIG GG IRA+ E+TG I+I+D G V IAA Sbjct: 541 VCPTYKGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDTGLVNIAA 600 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D + A I +TAEIE+GR+Y+GK I FG FV I GKEGL HIS+ R+ Sbjct: 601 IDLVSIEKAKAIIHGLTAEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVNRI 660 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 + ++++ G + VKVL+++ +G+I+LS K + Sbjct: 661 NSLDEFVKQGDMLMVKVLDINERGQIKLSRKATLQSQ 697 >UniRef50_D2L1T8 Polyribonucleotide nucleotidyltransferase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L1T8_9DELT Length = 762 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 354/700 (50%), Positives = 472/700 (67%), Gaps = 5/700 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 +PI + G + + LETG +A QA AV + T V VT Q + FFPL V Sbjct: 5 FDPIRLETTVGGNAIILETGRLANQADGAVWIQSGGTVVLVTACTQA-LAEEKGFFPLVV 63 Query: 62 NYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +YQE +YAAGRIPGS+FRRE GRPSE E L+ RLIDRP RPLFP+GF +EVQ+IATV+S Sbjct: 64 DYQEMSYAAGRIPGSYFRREIGRPSEREVLVCRLIDRPCRPLFPKGFRDEVQIIATVLSA 123 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKE-SKLDLVV 179 + QV PD++A+ AS AL +S IPF+GPI RVGYI+ Q+VLNPT + + L+L Sbjct: 124 DGQVEPDVLALTAASTALHISKIPFHGPIAGGRVGYIDGQFVLNPTVPMINAGAVLNLTF 183 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 A + AV+MVE + +SED + A+ +GH+ Q ++ E+ ++AGKP+ + P N Sbjct: 184 AASRDAVVMVEGGGRFVSEDLLADALEWGHKAVQPLLDLQEEMREKAGKPKIAFTPPAPN 243 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETL--DENELGEIL 297 E L A V AEA L +A+ I DK R +K +A ++ + + GE+L Sbjct: 244 EELEAVVRQAAEAGLKEAFTIKDKMPRRDARRAVKQAVMAAVVEAFPDQPTYKMKAGEVL 303 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK ++R+ + R+DGR+ +R + ++ GVLPRTHGS LF RGET+AL ATLG Sbjct: 304 EAMEKKLLRALIKETGIRLDGRDTKSVRPIGIQVGVLPRTHGSTLFARGETKALCVATLG 363 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 + D Q ++ L GE F+ HYNFPPY VGE M+ P RR+IGHG LA+R VL V+P Sbjct: 364 STGDEQKIETLNGETYKRFMLHYNFPPYCVGEVKMLRGPSRRDIGHGALAERSVLPVLPG 423 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 ++FP+T+RVVS++ ESNGSSSMASVCGASLALMDAGVPIK VAGIAMGL+KEGD++++ Sbjct: 424 PEEFPFTMRVVSQVMESNGSSSMASVCGASLALMDAGVPIKQPVAGIAMGLIKEGDDFLI 483 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILGDED +GDMDFKVAG+ DGI+ +QMDIKI GI + +M+ ALNQAK ARLHILG M Sbjct: 484 LTDILGDEDAMGDMDFKVAGTADGITGIQMDIKITGIPQAVMRQALNQAKEARLHILGRM 543 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + + APR ++S AP++ + INP+KI++VIG GG I+A+T ETG +I+IED G + I Sbjct: 544 AEVLAAPRPELSPLAPQLAVVHINPEKIREVIGPGGKNIKAITAETGASIDIEDTGKISI 603 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A E + A R+E +VG Y GKV +I+D G V I G EGLVH+SQ+ + Sbjct: 604 FAPTLESMEKARARVEYYDQHADVGANYKGKVKKIIDCGVIVEILPGLEGLVHVSQLDIE 663 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 RVE D ++MGQE+ VKVLE + GRIRLS K + + Sbjct: 664 RVESPFDVVKMGQELEVKVLEQEPSGRIRLSRKAVMNEEK 703 >UniRef50_B9E1K8 Polyribonucleotide nucleotidyltransferase n=15 Tax=Clostridiales RepID=PNP_CLOK1 Length = 708 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 301/706 (42%), Positives = 448/706 (63%), Gaps = 3/706 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 V + T+ ++ + + +++S DT V + K + G DFFPL++ Y+E Sbjct: 4 VIQTTVAGRTLKVDCEKVGMLSNCGMLISYGDTVVLINANASDKPREGIDFFPLSIEYEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R Y+ G+IPG F +REG+PSE L AR IDRP+RPLFP+G+ N+VQV+ TV+SV+ Sbjct: 64 RLYSVGKIPGGFIKREGKPSEKAILNARAIDRPLRPLFPKGYRNDVQVVCTVLSVDQDNL 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+IVAM GAS AL +S IPF P+G+ VG ++ +++NP ++ ++S L+L V T+ Sbjct: 124 PNIVAMNGASLALCISSIPFITPVGSVAVGLVDGNFIINPNLEDREKSTLNLTVCATKER 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 V+MVE+ A + ED M A++FG E+ + + E++K+ GK + + VNE L Sbjct: 184 VMMVEAGACEVPEDIMYDAIIFGFEECKKIALFQEEVMKKYGKKKDEPDLYKVNEDLEEE 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V A + DA I D+ ER + I + + +++++ ++++ ++K +V Sbjct: 244 VRGFAFDMIKDAMYIVDRDERNKVLKDIDEKLEEQFSEDY-ADNKSDIADVVYRVKKEIV 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 R +L R+DGRE D +R + G LPR HG+ LFTRG TQ + TLG+ D Q+L Sbjct: 303 RGMLLKEHRRVDGREFDEVRPISCEVGFLPRAHGTGLFTRGLTQVMTVVTLGSLGDVQIL 362 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 D + E + ++ HYNFP YS GE + P RREIGHG LA++ + ++P ++FPYT+ Sbjct: 363 DGVGLEDSKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPMEEQFPYTI 422 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--NYVVLSDILG 483 R+VSE+ SNGS+S AS+CG++LAL+DAGVPIK AGIAMGLV D +L+DI G Sbjct: 423 RLVSEVLSSNGSTSQASICGSTLALLDAGVPIKRPAAGIAMGLVTSEDLSQEEILTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED GDMDFKV G+ GI+A+Q D KI G++ + ++ L +A+ ARL+IL M+Q I Sbjct: 483 LEDFFGDMDFKVGGTEKGITAIQFDTKIHGLSNKCIKETLEKARTARLYILEKMKQCIPE 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 R ++S++AP+ + + I PDKI+DVIG GG VI + ETG I+I++DG + + + D E Sbjct: 543 HRAEVSKYAPKTYIMSIPPDKIRDVIGSGGKVINKIIAETGVKIDIKEDGKIFVMSEDSE 602 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 AK A++ I+++T EI VG +Y GKVT+I +FGAFV I GKEGLVHIS++ RV KV Sbjct: 603 GAKKALKIIDDLTREILVGEIYLGKVTKITNFGAFVEIHKGKEGLVHISKLDFTRVNKVE 662 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 D + +G E+ VKV+E+D QGRI LS K+A + S+ E ++ Sbjct: 663 DIVSVGDEILVKVIEIDNQGRINLSRKDAIKDSEKKEQNEKDVQKK 708 >UniRef50_D1Y1M0 Polyribonucleotide nucleotidyltransferase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y1M0_9BACT Length = 751 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 312/695 (44%), Positives = 435/695 (62%), Gaps = 4/695 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 G + +TG +A+QA AAV+ S +T + T K + G DFFPL V++ Sbjct: 2 EKTYTLNVGGQDLVFKTGKVAKQANAAVVASHGETTILTTACMSDKPRVGLDFFPLLVDF 61 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +ER YAAG+IPG + +REGRPS+ L AR++DR IR LF + N+V V+ATV++V+ + Sbjct: 62 EERYYAAGKIPGGYIKREGRPSQTAILSARVVDRSIRSLFDDSMRNDVHVVATVLAVDQK 121 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 +I+A+ AS AL++S IP++GP+GA R+G I+ + V+NPT+D + ES LDL VAG Sbjct: 122 NPANILAINAASMALTISDIPWSGPVGAVRMGCIDGELVVNPTEDRMAESTLDLTVAGHA 181 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 + MVE+ A+ + E+ ++ A+ ++ + ++ ++ E G+P+ E ++ Sbjct: 182 GGITMVEAGAREVPEELLVNALQTAQDEIKKIVAFQLQVRAEIGQPKAVLPAPLAIEEID 241 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 V + A I K+ER A + + +T A A+ E+ + + ++ K+ Sbjct: 242 RWVKDNLREETAKAVMIHGKKERGAAISALVEKTTAHF-ADLYADAESYIAGAVESLVKS 300 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT-ARDA 362 +R+ + R DGR D IR + VLP+ HGSALFTRGETQALV TLG D Sbjct: 301 TMRTITARDKIRADGRATDEIRPISCEVNVLPKVHGSALFTRGETQALVVTTLGMLGEDD 360 Query: 363 QVLDELM-GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Q++D L E FL HYNFPPYSVGE + P RREIGHG LA+R + ++P ++F Sbjct: 361 QIIDGLKLDEPNKRFLLHYNFPPYSVGEIKPMRGPGRREIGHGALAERALAPLVPGEEEF 420 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 PY VRVVS+I ESNGSSS AS+CG SL++M AGVP+K VAGIAMGL+KEGD+ V+L+DI Sbjct: 421 PYVVRVVSDILESNGSSSQASICGGSLSMMAAGVPMKKHVAGIAMGLIKEGDDMVILTDI 480 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 G EDH GDMDFKVAG+RDG++ALQMD K GIT+EI+ AL QA AR+ IL ME I Sbjct: 481 QGLEDHYGDMDFKVAGTRDGVTALQMDNKAGGITREILSRALMQAHQARMQILDAMETCI 540 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 P +S APRI T+ I+ DKI+DVIG GG VIR + +E+G I +EDDG+V I A Sbjct: 541 PEPAP-LSPNAPRIFTMNIDVDKIRDVIGPGGKVIRNIVQESGAKINVEDDGSVYICAVS 599 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 + + A + I +I E+E G + G VTR++ FGAFV + GKEGL+HIS+I+ K + K Sbjct: 600 PDSVEKARQMIHDIVREVEAGEAFYGTVTRLMAFGAFVEVLPGKEGLLHISEISTKHIGK 659 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQS 696 V D G V V+V E+D Q RI LS + Sbjct: 660 VEDVFAPGDHVIVEVKEIDDQNRINLSRRRLLADP 694 >UniRef50_C1TQM6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQM6_9BACT Length = 749 Score = 753 bits (1944), Expect = 0.0, Method: Composition-based stats. Identities = 321/698 (45%), Positives = 448/698 (64%), Gaps = 4/698 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + G+ + ETG +A+QA +V DT + T K + G DFFPL V+++E Sbjct: 4 IYRVRIGEEELVFETGKVAKQANGSVWARQGDTVILTTACMTDKPREGLDFFPLLVDFEE 63 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 R Y+AG+IPG F +REGRPS+ L AR+IDR IR LF ++V V++TV+SV+ Sbjct: 64 RFYSAGKIPGGFIKREGRPSQTAILSARVIDRSIRSLFESWMRHDVHVVSTVLSVDQHNP 123 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 P+I+A+ ASAAL++S IP+ GP+GA R+GYI+ V+NPT++ ++ S L+LVV+G Sbjct: 124 PNILAINAASAALTISDIPWGGPVGAVRIGYIDGSLVVNPTEEMMENSSLELVVSGHSDG 183 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 + MVE+ AQ + ED ++ A+ + + ++ + +E GK + P ++ Sbjct: 184 ITMVEAGAQEVPEDLLVDAMELAQGEIKRIVDLQLRMREEIGKDKIVIDPPVRVPEIDCW 243 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 V ++ +++A I DK++R A + ++ E + + K ++ Sbjct: 244 VETNLKSDIAEAVMIHDKKQRGAAIRALEDRAREHFAEEFPDKGGY-ISGAVEHWVKAMM 302 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT-ARDAQV 364 R + + R DGR+ D +R L VLP+ HGSA+FTRGETQ+L TATLG D Q+ Sbjct: 303 RKITVTEKRRADGRKTDELRSLSCEVDVLPKVHGSAVFTRGETQSLATATLGMLGEDDQL 362 Query: 365 LDELMGER-TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 +D L +FL HYNFPPYSVGE + P RREIGHG LA+R + ++PD +FPY Sbjct: 363 IDGLKHNEPNKSFLLHYNFPPYSVGEVRPMRGPGRREIGHGALAERALTPIIPDDTEFPY 422 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 VRVVS+I ESNGSSS AS+CG SLALM AGVPIK VAGIAMGL+KEGD+ VVL+DI G Sbjct: 423 VVRVVSDILESNGSSSQASICGGSLALMSAGVPIKRHVAGIAMGLIKEGDDVVVLTDIQG 482 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 EDH GDMDFKVAG+R+G++ALQMD K GIT+EI++ AL QAK AR+ IL VMEQAI+ Sbjct: 483 LEDHYGDMDFKVAGTREGVTALQMDNKAGGITREILKQALGQAKDARMAILDVMEQAISN 542 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 P GD+S APR++T+ IN DKI+DVIG GG VIR +T+ETG + I+DDG + IA E Sbjct: 543 P-GDLSPNAPRMYTMMINVDKIRDVIGPGGKVIRGITQETGAKVNIDDDGQILIAGASQE 601 Query: 604 KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 + AI+ I++I E++ G V+ GKVTR++ FGAFV + GKEGL+H+S+I+ RV KV Sbjct: 602 EVNAAIKMIDDIVREVQAGEVFQGKVTRLMAFGAFVEVLPGKEGLLHVSEISTHRVGKVE 661 Query: 664 DYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 D + G V V V E+D GRI L+ K+ Sbjct: 662 DVFKPGDPVLVMVREIDDMGRINLTRKKILADEAKVKE 699 >UniRef50_C0R0E0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Brachyspira RepID=PNP_BRAHW Length = 712 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 323/696 (46%), Positives = 455/696 (65%), Gaps = 3/696 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 + K + + LETG++A+QA +V + + +T + TVV K+ DFFPLTVNY Sbjct: 1 MVTVKSVFCGEELILETGLLAKQAHGSVTLRLGNTTILATVVAAKEPNLESDFFPLTVNY 60 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 E+ YA G+IPG FF+RE +P + E LI+R+IDRP+RPLFPEGF NEVQ+I TV+SV+ Sbjct: 61 NEKYYAGGKIPGGFFKREAKPRDKEILISRIIDRPLRPLFPEGFRNEVQIIPTVLSVDTD 120 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 + D +A+I +SAAL++S IPF GP+ A R+GY N +Y++NP EL S+LD++VAG++ Sbjct: 121 MPTDALALIASSAALTISWIPFGGPVAAVRIGYKNGEYIINPKNSELSTSELDIIVAGSK 180 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 A+LM+E EA+ +SE+ +GA+ H++ Q I NE+ G + + + + L Sbjct: 181 DAILMIEGEAKEVSEEVFIGAIELAHKEMQKYIDMQNEMASLCGTQKIEQELFEFDADLV 240 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE-NELGEILHAIEK 302 V ++ A DK +R +D +E + + E +++ I H+IE+ Sbjct: 241 KMVTEYGRDKIESANYNPDKTKRNESMDNAFNEIEEYIKTKVEDEKLISQVKGICHSIEE 300 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 +VR ++ R DGR D IR + T ++PR HGSALFTRG+TQ L TLG+ +DA Sbjct: 301 EIVREAIVEKCMRPDGRALDEIRPITTMTNLIPRVHGSALFTRGQTQCLSIVTLGSEKDA 360 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q++D++ G+ TF+ HYNFPP+SVGE G G+P RREIGHG LA+R AV+P DKFP Sbjct: 361 QLMDDIYGKENKTFMLHYNFPPFSVGEVGRYGAPGRREIGHGNLAERSFNAVLPPKDKFP 420 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVV+EI ESNGSSSMA++C ++++L+ AGVP+ A+VAGIAMGL D Y +L+DI Sbjct: 421 YTIRVVAEILESNGSSSMATICASTMSLLSAGVPLNASVAGIAMGLATYKDGYKILTDIQ 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDHLGDMDFKVAG+R GI+A Q+DIK+ GI+ +I++ AL QAK AR IL ++ I Sbjct: 481 GVEDHLGDMDFKVAGTRKGITAFQLDIKLTGISAQILKEALEQAKKARYFILDKIDATIA 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 G+IS+FAP+ T+ +NP+KI+ +IG GG I+A+ EETG+ +EI+D G V I A D Sbjct: 541 NA-GEISDFAPKYKTMDVNPEKIRVLIGPGGKNIKAIIEETGSDVEIQDSGVVNIFAPDT 599 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 I+ I + EVG VY G V I DFGAFV I G EGL HIS++A K V V Sbjct: 600 PTLDKTIKLINSYVKDPEVGEVYDGIVKDIKDFGAFVEILPGVEGLCHISELAYKHVMNV 659 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 + L++G EV VK+L+V + G+ LS K E+ Sbjct: 660 EEVLKIGDEVKVKILDV-KGGKYSLSRKALLEKPAD 694 >UniRef50_B0BXR0 Polyribonucleotide nucleotidyltransferase n=20 Tax=Alphaproteobacteria RepID=PNP_RICRO Length = 748 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 348/697 (49%), Positives = 474/697 (68%), Gaps = 3/697 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N I + + + L TG +ARQA AV V M ++ + T V KAK G F PLT Sbjct: 1 MFNEITKSVTWNGQVLELSTGKIARQADGAVTVKMGNSVLLCTAVVANKAKEGIGFLPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 +NY+E YAAG+IPG FF+ EG+PS+ E L++RLIDRPIRPLF FVNE V +V+S Sbjct: 61 INYREMAYAAGKIPGGFFKHEGKPSDREVLVSRLIDRPIRPLFHPAFVNETHVTCSVLSY 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 +P+ DI+A+IGASAALSLS P+ + A++VG IN ++VLNPT LK S+LDLVVA Sbjct: 121 DPETPVDILAIIGASAALSLSPAPYLEIVAASKVGLINGEFVLNPTLALLKTSQLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT +V+MVESEA LLSE+QML AV FG E Q VI+ I EL +EA KP+ + Q Sbjct: 181 GTSDSVMMVESEAHLLSEEQMLEAVKFGFESFQPVIKIIKELAEEAKKPKLEMQAL-YPA 239 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA--EDETLDENELGEILH 298 +L + L + A+ + KQER +D+I + ++ E++ ++ L Sbjct: 240 SLKKEIEKLFVKEIEQAFAMKSKQERSTNLDLITEKVFTHFVSDIENKKYSHYQIESALK 299 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 AIE ++R+ +L RIDGR IR + G+LP HGSALFTRGETQ+LV+ T GT Sbjct: 300 AIESGILRNEILEKNRRIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVSTTFGT 359 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 + D Q++D L GE + F+ +Y FPPYSV E + +P RRE+GHG+LA R + ++P+ Sbjct: 360 SLDEQIVDSLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNK 419 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 +FPY++RVV+E TESNGSSSMA+VCG+SLALM AGVPIKA VAGIAMGLVKEG N+ VL Sbjct: 420 VQFPYSIRVVAETTESNGSSSMATVCGSSLALMYAGVPIKAPVAGIAMGLVKEGKNFAVL 479 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDILGDED+ GDMDFKVAG+ +GI+ALQMDIKI G+ +IM+VAL QA+ RLHIL M Sbjct: 480 SDILGDEDYFGDMDFKVAGTGEGITALQMDIKISGVDFKIMKVALEQARLGRLHILEQMN 539 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + I+ P ++S+ AP TIKI+ DKI+D+IG GG VI+ + E +G I+I DDGTV + Sbjct: 540 KVISKPNNELSKNAPSTTTIKIDKDKIRDIIGPGGKVIKEICETSGAKIDISDDGTVSVY 599 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 A+D +K K A+ +I+ I E E+G ++ G V +++D GAF+ G K+G VHIS+++ +R Sbjct: 600 ASDRDKLKVALDKIKAIVVEPEIGEIFNGTVVKVLDSGAFINYVGNKDGFVHISEVSGER 659 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 +E V+ L+ G V VK++ D +G+ +L+IK A + Sbjct: 660 IETVSSVLKQGDIVKVKLIGFDNKGKAKLTIKNADKD 696 >UniRef50_B3EH06 Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorobium limicola DSM 245 RepID=PNP_CHLL2 Length = 736 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 344/736 (46%), Positives = 472/736 (64%), Gaps = 27/736 (3%) Query: 1 MLNPIVRK-FQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK-AKPGQDFF 57 M++ I+ K G +++ETG MA+QA +V+V + DT V TVV KK P QD+F Sbjct: 1 MISMIINKAIDLGQGKIISIETGKMAKQADGSVVVRLGDTMVLATVVSSKKTPPPNQDYF 60 Query: 58 PLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATV 117 PL V Y+E+ AAG+ PG FF+RE RPSE E L ARLIDR +RPLFP+G++ E Q+I TV Sbjct: 61 PLQVEYREKYSAAGKFPGGFFKRESRPSEKEILSARLIDRALRPLFPDGYLFETQIIVTV 120 Query: 118 VSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 177 +S + + D++ + ASAA+ +S IPF+ + RVG IN ++++NP +EL S LD+ Sbjct: 121 ISSDQINDADVLGGLAASAAIMVSDIPFHNAMSEVRVGRINGKFIINPDVNELVNSDLDI 180 Query: 178 VVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEP 237 + GT + M+E E + +SE +ML A+ FGH+ + + NE+ E KP + P Sbjct: 181 CIGGTTDTICMLEGEMKEISEAEMLDAIKFGHDAIRRLCALQNEIAAEVAKPARPFAPAV 240 Query: 238 VNEALNARVAALAEARLSD-AYRITDKQERYAQVDVIKSETIATLLAEDETL-------- 288 + L V L E RL + AY K++R Q I E I + + + Sbjct: 241 IPSELTDLVRGLCETRLRELAYTPLRKEDRAEQTAAIYREIIQSTVEHFKAAISPEEIQA 300 Query: 289 --------DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGS 340 +E+ + E +HA+EK V+R +L R+DGR + +R + + G++PR HGS Sbjct: 301 DPSKALCLNEHIIDEQIHAVEKKVMRHMILDDAKRLDGRTLEEVRPISIELGIIPRAHGS 360 Query: 341 ALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRRE 400 ALFTRGETQALVT TLGT +DAQ +D L F+ HYNFPP+SVGETG +GS RRE Sbjct: 361 ALFTRGETQALVTITLGTKKDAQSVDNLTNNADKKFMLHYNFPPFSVGETGRIGSTGRRE 420 Query: 401 IGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAA 460 IGHG LA+R + V P +FPYTVR+VS+I ESNGSSSMASVCG +LALMD GVPI+ Sbjct: 421 IGHGNLAERAIKMVAPPEQEFPYTVRIVSDILESNGSSSMASVCGGTLALMDGGVPIRKP 480 Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 V+GIAMGL+KEG NY VLSDILG+EDHLGDMDFKV+G+RDGI+A QMDIKI+G+ I++ Sbjct: 481 VSGIAMGLIKEGSNYAVLSDILGNEDHLGDMDFKVSGTRDGITACQMDIKIDGLDYHILE 540 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL QA+ RLHIL ME+AI + R ++++FAPR+ TI++ D I +IGKGG IR++T Sbjct: 541 SALEQARRGRLHILDKMEEAIPSARVELAQFAPRLTTIQVPVDAIGLIIGKGGETIRSIT 600 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-FGAFV 639 EETG I IEDDGTV IA + E A+ I+ + A+ EVG +Y GKV + D GAFV Sbjct: 601 EETGAEINIEDDGTVTIACSSVEGTHAALATIKTLLAKPEVGTIYLGKVRDVRDELGAFV 660 Query: 640 AIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDR-----QGRIRLSIKEAT 693 +GLVHIS+I+ +RV KV+D+L++G + VK+++V + + R LS++ Sbjct: 661 EFLPKTDGLVHISEISATERVAKVSDHLKIGDRIKVKLVDVRKDPRTGKTRFALSMRAVE 720 Query: 694 EQSQPAAAPEAPAAEQ 709 + A E Q Sbjct: 721 TDAANGAPQENNQENQ 736 >UniRef50_A6DU91 Polynucleotide phosphorylase/polyadenylase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU91_9BACT Length = 696 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 320/699 (45%), Positives = 455/699 (65%), Gaps = 4/699 (0%) Query: 1 MLNPIVRKFQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL 59 M G +T+ETG MA A AAV V+ +T V VT + G DFFPL Sbjct: 1 MSKIGSVTVDLGDNRPITIETGKMALLANAAVTVTQGETVVLVTACSSA-PRAGIDFFPL 59 Query: 60 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 V Y+E+ AAG+ G F +RE RPSE E L +R+ DRP+RPLFP+GF +EVQ+ A V+S Sbjct: 60 MVAYREKYSAAGKFLGGFMKRENRPSEHEILTSRMTDRPLRPLFPKGFYHEVQIQAIVLS 119 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + +PD +AM+G+SAAL LS +PF GP+GA RVG ++ ++V NPT ++++ S L+L+ Sbjct: 120 YDKVNDPDTLAMLGSSAALMLSDLPFQGPLGALRVGQVDGEFVANPTTEQMEASALELIY 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 +GT +M+E + LSE+++ A+ + + +V+ + EL GK + D+ + + Sbjct: 180 SGTPGKTIMIEGDCDELSEERLFEALKYADSKVEVMAKAQLELQATFGKAKKDYATDKIE 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHA 299 E + A VA ++ +A + D+ ER A +D + + L A+ + EL E Sbjct: 240 EDVKAAVATAISGKIDEACLVIDRTERGAALDAVYATVEEALKAQFDEERHGELKEAYSH 299 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 + + +R ++ R DGR + +R L ++PRTHGSALF RGETQALVT TLG A Sbjct: 300 LIEMNIRRLIIEEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDA 359 Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 + AQ + + G TF HYNFP +SVGE G + REIGHG LA+R + +MP Sbjct: 360 KAAQSAETIRGRYDKTFYLHYNFPNFSVGECGRIMGAGNREIGHGNLAERALAKMMP--A 417 Query: 420 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 479 +PYTVRV+SE+ SNGS+SMAS+CG SLALMDAGVP+K AVAGI++GLV+E D YV+++ Sbjct: 418 DYPYTVRVISEVMGSNGSTSMASICGGSLALMDAGVPLKKAVAGISVGLVQEADKYVMIT 477 Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 DILG EDH GDMDFKVAG+RDGI+A Q+D+KI G++ ++M A+ + K AR+ IL VM+ Sbjct: 478 DILGSEDHYGDMDFKVAGTRDGITAFQLDLKIAGVSLDMMYEAMLRDKTARMDILDVMDG 537 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 +++ + +IS+ AP++H +KINP+KI +IG GG I+A+ EETG I +EDDGTVK+ Sbjct: 538 CLSSAQEEISDHAPQVHAMKINPEKIGALIGPGGKHIKAICEETGAEINVEDDGTVKVFT 597 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D K AI ++E E E G++Y G V + +FGAFV I GG +GL+HIS++AD RV Sbjct: 598 ADKTALKAAIEQVESYCFEPEAGKIYRGVVVSVKEFGAFVEIAGGHQGLLHISELADYRV 657 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQP 698 EKVTD + G +V VK+LE+D +GR+RLS K A E+ + Sbjct: 658 EKVTDVVNEGDKVSVKILEIDDRGRMRLSRKAALEEMED 696 >UniRef50_D1INE0 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1INE0_VITVI Length = 905 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 301/709 (42%), Positives = 441/709 (62%), Gaps = 12/709 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G ++T ETG +AR A AV++SMD+T V TV K +DF PLT Sbjct: 3 VLETFKEEFEIGSRSITFETGKIARFANGAVVMSMDETKVLSTV-ASSKGDAARDFLPLT 61 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ +A G IP +F RREG P E E L RLIDRPIRPLFP GF +EVQV+A+V+S Sbjct: 62 VDYQEKHFAQGVIPTTFMRREGAPRERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSS 121 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PD++A SAAL LS IP+ GPIG R+G I Q+++NP+ DEL S L+LV A Sbjct: 122 DGKQDPDVMAANATSAALMLSDIPWGGPIGVIRIGRICGQFIVNPSMDELSLSDLNLVYA 181 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T LM++ +A+ +SE + A+ H + ++ L AGK + ++ V++ Sbjct: 182 CTRDKTLMIDVQAREISEKDLEAALRLAHPEAVRYLEPQIRLAARAGKSKKEYTLSMVSD 241 Query: 241 ALNARVAALAEARLSDAYRIT--DKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 +V LAEA + + K ER +D+I + L E + L +++ Sbjct: 242 ITFEKVRNLAEAPIEAVFTDHTYGKFERGEALDLITQDVKRALEEECDEESLKVLPKVVD 301 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K VVR R++A R+DGR + +R L +G LP HGS+LF+RG+TQ L T TLG Sbjct: 302 TVRKEVVRRRIIAEGLRVDGRHLNEVRPLYCESGNLPILHGSSLFSRGDTQVLCTVTLGA 361 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 DAQ LD L+G T F+ HY+FPP+S+ E G RRE+GHG LA++ +LAV+P Sbjct: 362 PGDAQRLDSLVGPPTKRFMLHYSFPPFSINEVGKRVGLNRREVGHGTLAEKALLAVLPPE 421 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 ++FPYTVR+ SE+ S+GS+SMA+VCG S+ALMDAG+P++ VAGI++GLV E D Sbjct: 422 EEFPYTVRINSEVMASDGSTSMATVCGGSMALMDAGIPLREHVAGISVGLVTEVDPSTNT 481 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +L+DILG EDHLGDMDFK+AG+R GI+A+Q+DIK GI +I+ L A RL Sbjct: 482 IKDYRILTDILGLEDHLGDMDFKIAGTRKGITAIQLDIKPAGIPLDIICECLEPALRGRL 541 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL MEQ INAPR +PR+ T+K + D ++ ++G G++ R + EETG I + D Sbjct: 542 QILDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISVSD 601 Query: 592 DGTVKIAATDGEKAKHAIRRIEEIT-AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 GT+ + A + +++ I EIE+G +Y G VT + ++GAFV GG++GL+H Sbjct: 602 -GTLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGLLH 660 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 699 IS+++ + V +V+D + +GQ++ + + D +G I+LS+K + Sbjct: 661 ISELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLPRPGSD 709 >UniRef50_C7N5E6 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=2 Tax=Coriobacteriaceae RepID=C7N5E6_SLAHD Length = 743 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 323/713 (45%), Positives = 439/713 (61%), Gaps = 6/713 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + + F+ ETG +A+QAT AV+V +T V VT V + K DFFPLTV Sbjct: 1 MEKVSLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEK-DYDFFPLTV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++ E+ YA GRIPG + +REG+ S+ TL AR+IDRPIRP F +GF EV V+AT +++ Sbjct: 60 DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAID 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVV 179 Q PD + + GASAAL + PF+GP R+ + ++++NPT +E + S L+L + Sbjct: 120 GQNPPDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTI 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT + MVE+ A ++E+ ML A+ FG E + E + +W + Sbjct: 180 AGTRDYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPD 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIA-TLLAEDETLDENELGEILH 298 ++ RV +S A + DKQ R A+V+ +K+ A E++ +++ L Sbjct: 240 ASIAERV-DAHFDEMSAALKDADKQSRIAKVEELKAAIKANDFSEEEQAAWGSDIAAALK 298 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 ++EK+ +R V+ R DGR D IR L +R G LPR HGS LF RG+TQAL TLG Sbjct: 299 SLEKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGL 358 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +AQ LD + ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P Sbjct: 359 LNEAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSE 418 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D+FPY +RVVSEI ESNGSSSMAS CG+ LALMDAGVPIKA V+GIAMGL+KE D V+L Sbjct: 419 DEFPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVIL 478 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI G ED LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M Sbjct: 479 SDIQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHILNAML 538 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 I PR ++ + APRI TI I DKI++VIGKGG IR + + TG +IEI++DGTV IA Sbjct: 539 AEIPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGTVHIA 598 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 + D E + A +E I E EVG VY G V I FGAFV + K+GL+HIS++A+ R Sbjct: 599 SVDQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRMANGR 658 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 V KV D L MG V V+V+E+D + G++ L E + + + E+G Sbjct: 659 VSKVEDVLNMGDTVKVQVIEIDPKSGKVSLDRLEKPDAPEGSEPAHNGREERG 711 >UniRef50_B5E2A0 Polyribonucleotide nucleotidyltransferase n=202 Tax=Bacteria RepID=PNP_STRP4 Length = 737 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 335/715 (46%), Positives = 453/715 (63%), Gaps = 8/715 (1%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + V + + + +ETG +A+QA +V+V ++ V V KK G DFFPL V Sbjct: 1 MAKQVFQTTFAGRELIVETGQVAKQANGSVVVRYGESTVLTAAVMSKKMATG-DFFPLQV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 NY+E+ YAAG+ PG F +REGRPS TL ARLIDRPIRP+F EGF NEVQVI TV+S + Sbjct: 60 NYEEKMYAAGKFPGGFMKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + + AM G+S ALS+S IPF+GPI +VGY++ Q ++NP+Q++ ++S L+L VAG Sbjct: 120 ENASAPMAAMFGSSLALSISDIPFDGPIAGVQVGYVDGQIIINPSQEQAEQSLLELTVAG 179 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T+ A+ MVES A+ LSE+ ML A++ GHE + +I E+V GK + + + V+ Sbjct: 180 TKHAINMVESGAKELSEEIMLEALLKGHEAVKELIAFQEEIVAAVGKEKAEVELLHVDAE 239 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSET---IATLLAEDETLDE--NELGEI 296 L A + A + L A ++ +K R A V+K + A+ E D ++ EI Sbjct: 240 LQAEIIAAYNSDLQKAVQVEEKLAREAATQVVKDQVTAVYEEKYADHEEFDRIMRDVAEI 299 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 L +E VR + + R DGR+ D IR LD LPR HGS LFTRG+TQAL TL Sbjct: 300 LEQMEHAEVRRLITEDKVRPDGRKVDEIRPLDAVVDFLPRVHGSGLFTRGQTQALSVLTL 359 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416 + Q++D L E F+ HYNFP YSVGETG G+P RREIGHG L +R + V+P Sbjct: 360 APMGETQIIDGLDPEYKKRFMHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLP 419 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 +++FPY +R+V+E+ ESNGSSS AS+C +LALM GVPIKA VAGIAMGL+ +G+NY Sbjct: 420 SLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGNNYT 479 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 VL+DI G EDH GDMDFKVAG+RDGI+ALQMDIKI+GIT EI+ AL QAK AR IL V Sbjct: 480 VLTDIQGLEDHFGDMDFKVAGTRDGITALQMDIKIQGITAEILTEALAQAKKARFEILDV 539 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 +E I R +++ AP+I TIKI+ DKIK VIGKGG I + ETG I+I+++G V Sbjct: 540 IEATIPEVRLELAPTAPKIDTIKIDVDKIKIVIGKGGETIDKIIAETGVKIDIDEEGNVS 599 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 I ++D + A I + E +V VY KV RI FGAFV + + LVHIS++A Sbjct: 600 IYSSDQDAINRAKEIIAGLVREAKVDEVYRAKVVRIEKFGAFVNLFDKTDALVHISEMAW 659 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 R +V D +++G EV VKV+++D +GRI S+K + E E+ E Sbjct: 660 TRTNRVEDLVEIGDEVDVKVIKIDEKGRIDASMKALLPRPPKPEHDE--KGEKSE 712 >UniRef50_B5S2C1 Polyribonucleotide nucleotidyltransferase protein n=5 Tax=Proteobacteria RepID=B5S2C1_RALSO Length = 752 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 420/730 (57%), Positives = 526/730 (72%), Gaps = 32/730 (4%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M N IV++FQ+G H V +ETG +ARQA+ AV++ MDDT V TVVG K KPGQDFFPLT Sbjct: 1 MFNKIVKEFQWGNHKVRMETGEIARQASGAVLLDMDDTVVLATVVGAKNPKPGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y E+TYAAG+IPG FF+REGRPSE ETL +RLIDRP+RPLFPEGF NEVQV+ V+S+ Sbjct: 61 VDYIEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPLRPLFPEGFYNEVQVVVHVLSI 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 NP+V DI A++ ASAAL++SG+PFNGP+GAARVGY + QY+LNP + +L S LDLVVA Sbjct: 121 NPEVPADIPALVAASAALAVSGLPFNGPVGAARVGYKDGQYLLNPNRAQLAHSDLDLVVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AVLMVESEAQ LSE+ MLGAVV+GHEQ Q+ I I++LV+E GKP WDWQ P NE Sbjct: 181 GTERAVLMVESEAQQLSEEVMLGAVVYGHEQMQIAINAIHDLVREGGKPEWDWQAAPKNE 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 AL A+V+ L A L AY++ K R ++ + + A L D E+ IL + Sbjct: 241 ALVAKVSELGLADLQAAYQLRQKSARSQKLKEVYASVAAKLAEAGVEADGVEVDNILFEL 300 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +VR ++L GEPRIDGR+ +R +++R+ VLPR HGSALFTRGETQALV ATLGT Sbjct: 301 ESKIVRGQILNGEPRIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKS 360 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 D Q++D L GE D F+ HYN PP++ GETG VGSPKRREIGHGRLAKR ++ V+P D+ Sbjct: 361 DEQIIDALQGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDE 420 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV----------- 469 F YT+R+VSEITESNGSSSMASVCG LALMDAGVP+KA VAG+AMGL+ Sbjct: 421 FAYTIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILXXXXXXXXXX 480 Query: 470 ---------------------KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 GDMDFKVAG+ + I+ALQMD Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDMDFKVAGTDNCITALQMD 540 Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 IK++GITKEIMQVAL QAK RLHILG M+ A+ R ++S APR+ T+KINP+KI+DV Sbjct: 541 IKVQGITKEIMQVALAQAKEGRLHILGKMQSAMGHARTELSAHAPRMITVKINPEKIRDV 600 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 IGKGGS I+ALT+ETG TI+I++DGT+ IA+T E A RRIE ITAE EVG++Y+G Sbjct: 601 IGKGGSTIQALTKETGCTIDIQEDGTITIASTSSEGMAEAKRRIEGITAEAEVGKIYSGT 660 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLS 688 V +++DFGA V I GK+GL+HIS+IA++RV +V+DY++ GQ V VK+L D +GR+RLS Sbjct: 661 VLKLLDFGAIVNILPGKDGLLHISEIANERVNQVSDYVKEGQLVRVKLLSTDEKGRMRLS 720 Query: 689 IKEATEQSQP 698 IK A + Sbjct: 721 IKAAKAEEGD 730 >UniRef50_B2S4C3 Polyribonucleotide nucleotidyltransferase n=2 Tax=Treponema pallidum RepID=PNP_TREPS Length = 702 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 319/692 (46%), Positives = 442/692 (63%), Gaps = 2/692 (0%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 G H + LE+G +ARQA +V + + TA+ TV + + G D+ PLTV++ Sbjct: 2 KHSITGTIGDHPLLLESGYLARQANGSVYLQCEGTAILATVCSSAQRQEGLDYVPLTVDF 61 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 E+ YA G++PG F +REGRP + E LI+RLIDRP+RPLF + F ++ V+ T +S + Sbjct: 62 NEKYYAVGKMPGGFIKREGRPKDREILISRLIDRPMRPLFEKEFGRDIHVVPTCISSDMV 121 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 D++A++ +SAA++LS IPF+GP+ A RV Y+N YV+NPT ++ + +++VVAGT Sbjct: 122 HPHDVLAIVASSAAVTLSDIPFHGPVAAVRVAYLNGSYVINPTFSQIDAASMEVVVAGTR 181 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 + MVE A+ +SED MLGA+ E + + L GK + P Sbjct: 182 QGITMVEGGAREVSEDLMLGALEQAQEHIKALCDMQERLRGLCGKEKQTVIPSSAQLVGR 241 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEI-LHAIEK 302 R+ LA RL+ A K ER + D +K + A+ E + L + H +E Sbjct: 242 DRIYELAYPRLAQALYAQGKGERRSACDAVKRDVAQQYAAQLENDVQRRLFDALFHEMEY 301 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 ++R +L RIDGR D IR + GVLPR HGSA+FTRGETQ+L TLG D Sbjct: 302 EILRLNILDRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDG 361 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 QV D++ G+R + F+ HYNFPP+SVGE G +G RREIGHG LA R + AV+PD ++FP Sbjct: 362 QVYDDIEGDRRENFILHYNFPPFSVGEIGRMG-VGRREIGHGCLAHRSLSAVIPDPEQFP 420 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YTVRVVSEI ESNGSSSMA+VC +L+L+ AGVPIK VAGIAMGL+ +G Y +LSDIL Sbjct: 421 YTVRVVSEILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDIL 480 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G+EDHLGDMDFKVAG+ DGI+ QMD+K+E ++ +M+ AL QA+ RLHIL VM Q I+ Sbjct: 481 GEEDHLGDMDFKVAGTCDGITGFQMDVKVEAVSASLMKEALQQARVGRLHILSVMNQTIS 540 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 AP IS +AP I + KI +KI +IG GG +++L+++ TI + DGTV ++ D Sbjct: 541 APSVHISRYAPHIESFKIAVEKIGALIGPGGKTVKSLSDQYRVTINTDSDGTVTVSGRDA 600 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 + A + +T + VGRVY G V RIV+FGAFV I GKEGL H+S+++ RV KV Sbjct: 601 QSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEIFPGKEGLCHVSKLSRSRVSKV 660 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 +D LQ GQ + VK++++DR GR+ LS +A E Sbjct: 661 SDVLQEGQRICVKLIDIDRMGRLNLSYIDALE 692 >UniRef50_C0QTM3 Polyribonucleotide nucleotidyltransferase n=6 Tax=Aquificales RepID=PNP_PERMH Length = 709 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 317/695 (45%), Positives = 475/695 (68%), Gaps = 3/695 (0%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQE 65 + + + +++ETG A+Q+ AV+V +TAVFV V ++A+ DF PLTV+Y+E Sbjct: 11 KVETKIQETPISIETGYFAKQSNGAVIVRQGETAVFVAAVISEEAQADIDFLPLTVDYRE 70 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 +TYA G+IPG F +REG+P+ E L++RLIDRPIRP+FP+GF N+V + A +S + + + Sbjct: 71 KTYAYGKIPGGFVKREGKPTVREILVSRLIDRPIRPMFPKGFFNDVIITAMTLSADDKYD 130 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA 185 PD++A++GASAAL ++ PF GP+ RV ++ ++++NPT ++ S +D+VVAGT+ A Sbjct: 131 PDVLAIVGASAALHITEAPFEGPVAGVRVCRLDGEFIVNPTYEQRNRSDIDIVVAGTKDA 190 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNAR 245 ++MVE ++ +SE+ +L A++F HE+ + + EL + GK + + + +E + A Sbjct: 191 IVMVEGGSEEVSEEVILDAILFAHEEIKKLCDLQEELRSKVGKEKITVEIDEEDERIKAE 250 Query: 246 VAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVV 305 + ++ + +A+ I DK+ER ++ I E I + E E + I I N++ Sbjct: 251 LESIVRESVKEAFNILDKKERNKRIKEIYEEAIQKI--EIPEEKEKKAEVIYKEIVSNIM 308 Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA-RDAQV 364 R +VL + RIDGR D IR + +RTG+ PR HGSA+FTRG+TQA V TLG + Sbjct: 309 REKVLKEKVRIDGRRPDEIRPIWIRTGLFPRIHGSAIFTRGQTQAFVATTLGAPGEEQIE 368 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 GE F+ HYNFPP+S GE +P RREIGHG LA+R + ++PD ++FPY Sbjct: 369 ESIEEGEEKKRFMLHYNFPPFSTGEARPPRAPSRREIGHGNLAERAIEPLIPDEEEFPYV 428 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 +RVVSEI ESNGS+SMA+VCGASL+L DAGVP+K VAGIAMGL+KE D+YV+L+DILGD Sbjct: 429 IRVVSEILESNGSTSMATVCGASLSLFDAGVPMKKHVAGIAMGLLKEDDDYVILTDILGD 488 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 EDHLGDMDFKVAG+RDG++++QMDIKI+G++KEI+Q AL QAK AR+HIL +M +A+ P Sbjct: 489 EDHLGDMDFKVAGTRDGVTSIQMDIKIKGLSKEILQEALEQAKKARMHILDLMYKAMPQP 548 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 R ++S AP++ T+++ P+KI +IG G I+ + +ETG I+++ +G V+I A DGE Sbjct: 549 RPELSPHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQEGLVRIYAVDGES 608 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 A A IE + +IE+G VY GKVTR+ D+GAFV + GK L+H+SQI+ +R+ + Sbjct: 609 ADKAKEMIERLIMDIELGEVYMGKVTRVEDYGAFVELMPGKLSLLHVSQISPERIRSAKE 668 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 699 +++G + VKV+++D GR ++S+KE E +P Sbjct: 669 KIKVGDILTVKVIDIDEMGRAKVSLKEVREGEEPK 703 >UniRef50_B7ATJ6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B7ATJ6_9BACE Length = 742 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 293/692 (42%), Positives = 421/692 (60%), Gaps = 7/692 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + T+T++ G + QA A ++ DT V T K+ + G DFFPL+V Y+ Sbjct: 49 KSYSMEIAGRTLTVDVGRVCAQANGAALMHYGDTVVLSTATASKEPREGIDFFPLSVEYE 108 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YA G+IPG F +REG+ SE L +R+IDRP+RPLFP+ + N+V + V+SV+P+ Sbjct: 109 EKLYAVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTLNNMVMSVDPEC 168 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 P++VAM+GAS A +S IPF+GP ++G I+ ++V+NP+Q++ K L L VA T Sbjct: 169 RPELVAMLGASIATCISDIPFDGPCAMTQLGMIDGEFVVNPSQEQWKNGDLRLTVASTSQ 228 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 V+M+E A + E +M+ A+ HE Q +I+ IN++V E GKP+ ++ + + + Sbjct: 229 KVIMIECGANEVPEARMIEAIYKCHEVNQTIIEFINKIVAEVGKPKHSYESCAIPQEMFD 288 Query: 245 RVAALAE-ARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 + A+ + A DKQ R A +D I + +E LGE ++ +K Sbjct: 289 AMKAIVTPEEMEVAVFTDDKQTREANIDAITEKFKEAFADNEE--WLAILGEAVYQYQKK 346 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 VR +L R DGR IR L ++PR HGSA+FTRG+TQ TL +AQ Sbjct: 347 TVRKMILKDHKRPDGRAITQIRPLAAEIDLIPRVHGSAMFTRGQTQICDVVTLAPLSEAQ 406 Query: 364 VLDEL-MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 +D L ++ HYNFP YSVGET P RREIGHG LA+R ++ V+P ++FP Sbjct: 407 KVDGLDENVTAKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALIPVLPSEEEFP 466 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GDNYVVLSD 480 Y +R VSE ESNGS+SMAS C + ++LM AGVPIK VAGI+ GLV D+Y+VL+D Sbjct: 467 YAIRAVSETFESNGSTSMASTCASCMSLMAAGVPIKRMVAGISCGLVTGDTDDDYIVLTD 526 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG-VMEQ 539 I G ED GDMDFKV G+ +GI+A+QMDIKI G+T+ I++ A+ + + ARL I+ M+ Sbjct: 527 IQGLEDFFGDMDFKVTGTTEGITAIQMDIKIHGLTRPIVEEAIARTREARLFIMDTCMKP 586 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 AI PR ++ ++AP+I KI+P KI DV+G+ G I A+ EETG I+I DDG V I Sbjct: 587 AIAEPRKEVGKYAPKIIQTKIDPAKIGDVVGQRGKTINAIIEETGVKIDINDDGFVSICG 646 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 + E + A++ I I + E G+++ GKV I +FGAF+ GKEG+VHIS+IA +R+ Sbjct: 647 VESEGMQKALKYINTIVTDFEEGQIFEGKVVSIKEFGAFIEFAPGKEGMVHISKIAKERI 706 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 V D L +G V L D+ GRI SIK+ Sbjct: 707 NHVEDVLTLGDTVRCICLGKDKMGRISFSIKD 738 >UniRef50_Q7UR95 Polyribonucleotide nucleotidyltransferase n=5 Tax=Planctomycetaceae RepID=PNP_RHOBA Length = 753 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 304/702 (43%), Positives = 455/702 (64%), Gaps = 7/702 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + + + + G ++ ETG +A+QA +V+V +T V V +PG DFFPL Sbjct: 3 VQKVRVERKIGDSVLSFETGHIAKQAAGSVLVQYGETVVLVAA-ASGTPRPGIDFFPLMC 61 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+ER AAG+ PG F +REGRPS E L +RL+DRPIRPL+P G+ +EVQV A V++ + Sbjct: 62 DYRERLAAAGKFPGGFLKREGRPSTKEILSSRLMDRPIRPLWPAGYKDEVQVQACVIASD 121 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 Q + D++AMIG + AL +S +PF GP+G+ RVG ++ + V PT D+L++S+LD++V+G Sbjct: 122 LQNDGDVLAMIGGATALHISPLPFKGPLGSVRVGKVDGKLVAFPTADQLEQSELDMIVSG 181 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 + V M+E A + ED+M+ A+ F H+ + VI E K+ + +Q ++ Sbjct: 182 SRDMVAMIEGFANEMPEDEMMEAIGFAHDAIREVIDLQEEFYKKVNPEKTPYQSPE-DDG 240 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE---NELGEILH 298 L R+ + A + + KQ R V ++ +A ++ + D N + H Sbjct: 241 LLQRLTDAYYSDFKTAQQTSGKQARAEAVRAVRDRAMADVIPDPNAADAVCVNRFKSVWH 300 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 +E+ VVR +LA R DGR+ + +R + T +LPR HGSALF RGETQAL+T LGT Sbjct: 301 DLEEKVVRDLILA-GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGT 359 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +RD Q +D L E + F+ YNFP YSVGE + P RREIGHG LA+R V V+P Sbjct: 360 SRDEQRVDGLQDEYSKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSA 419 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG-DNYVV 477 D FPYT+RV+S+ITESNGSSSMASVCGA+L LM +GVPI VAGI++GLV++G DN+ + Sbjct: 420 DDFPYTIRVISDITESNGSSSMASVCGATLGLMASGVPISNPVAGISVGLVQDGPDNWCL 479 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 ++DILG EDH GDMDFK+AG+++GI+ +Q+D+K+ G+T +I++ L Q++ AR+ IL M Sbjct: 480 ITDILGTEDHFGDMDFKIAGTQNGITGIQLDLKVTGVTNDIIRATLKQSREARIEILKKM 539 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I PR +IS APR+ KI+PDKI +IG GG IR + E TG IE++D+GTV + Sbjct: 540 LTTIPRPRREISPTAPRLLRTKISPDKIGALIGPGGKNIRGIQETTGAVIEVDDEGTVLV 599 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 A+++ E A+ A+R++E TA +++G++Y G V+ I +FGAFV I G++GLVHIS+++ Sbjct: 600 ASSNKESAQEAMRQVEACTATVQIGKIYDGTVSSIKEFGAFVEILPGRDGLVHISEMSGG 659 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 699 + + + +G + V V++VD R++LS ++A E+ Sbjct: 660 YISSLDQVIAVGDAMKVLVIDVDEHDRVKLSRRKALEELGEE 701 >UniRef50_D1AX54 Polyribonucleotide nucleotidyltransferase n=2 Tax=Fusobacteriaceae RepID=D1AX54_STRM9 Length = 732 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 331/734 (45%), Positives = 459/734 (62%), Gaps = 28/734 (3%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + V +ETG +ARQA +V+V+ T V VT K+ K GQDFFPLT Sbjct: 1 MFDKKTYILDVAGKEVKIETGEIARQAGGSVLVTSGGTTVLVTTTRSKEVKEGQDFFPLT 60 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y E+ YA G+ PG F +RE +PS E LI+RLIDRPIRPLFPEGF N V V+ VVS Sbjct: 61 VDYIEKFYATGKFPGGFIKRESKPSTEEVLISRLIDRPIRPLFPEGFFNAVHVVINVVSF 120 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + P+ +A IG S AL LS IPF+GP+ VGY+N +Y++NP +++ + L VA Sbjct: 121 DGINMPEDIATIGVSFALGLSDIPFSGPVAGVTVGYVNGEYIINPDKEQRANMDIYLSVA 180 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT++A+ MVE+ A +SE++ML A++ GHE+ + + + ++ + +++ +E Sbjct: 181 GTKSAITMVEAGASEVSEEEMLNAIMLGHEEIKKICEQQETILNSLNITKMEFKGINYDE 240 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL------------------ 282 + + + L +A + K E+Y +D + ++T Sbjct: 241 RVTTFLNK-YQGELKNAILVPGKLEKYEAIDNLCESLLSTFKLEIAKEILSKEKTEEEKL 299 Query: 283 --------AEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL 334 + E + H +EK +VR ++ + R DGR+ D IR L+ + VL Sbjct: 300 LELIGENKEKSVDELVKEFKKYYHDLEKKIVRELIIFDKYRADGRKIDEIRPLNAQIDVL 359 Query: 335 PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVG 394 HGSALFTRGETQALVTATLG+ D Q++D + GE F HYNFPP+SVGE G + Sbjct: 360 KMPHGSALFTRGETQALVTATLGSKEDEQIIDGMEGEYNKKFFLHYNFPPFSVGEAGFMR 419 Query: 395 SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAG 454 +P RRE+GHG LA+R + AVMP +D FPYTVRVVSEITESNGSSS AS+CG SLALM AG Sbjct: 420 APGRRELGHGNLAERALKAVMPLIDDFPYTVRVVSEITESNGSSSQASICGGSLALMAAG 479 Query: 455 VPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 514 VPIK VAGIAMGL+KE +N+ VL+DI G EDHLGDMDFKVAG++ GI+A+QMDIKIEGI Sbjct: 480 VPIKGTVAGIAMGLIKEAENFTVLTDIQGLEDHLGDMDFKVAGTKKGITAIQMDIKIEGI 539 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 KEIM++AL QA R+HI+ VME I R ++ E AP+I +KI+P KI +IG G Sbjct: 540 NKEIMEIALTQAHKGRMHIIEVMEATIPESRPNLPENAPKIINLKIDPSKIAGLIGPAGK 599 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 +I+++ EETG I++EDDG V I D EK A + + T +E+ +VY G+VT++ Sbjct: 600 IIKSIIEETGVKIDVEDDGRVSIFGVDQEKMNRAFELVTQYTLTVELDKVYKGRVTKLAK 659 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 FGAFV + G EGL+HIS+I+ KR+++V D L++ V VKV+ ++ + LS+K E Sbjct: 660 FGAFVELVPGTEGLLHISEISHKRIKQVEDVLKVDDIVDVKVIALEDNNKFSLSMKALIE 719 Query: 695 QSQPAAAPEAPAAE 708 + + A + E Sbjct: 720 K-EEAKEENSNEGE 732 >UniRef50_Q1J1D0 Polyribonucleotide nucleotidyltransferase n=6 Tax=Deinococci RepID=PNP_DEIGD Length = 721 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 336/713 (47%), Positives = 452/713 (63%), Gaps = 12/713 (1%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 G +++ETG +A+ A+ +V + DT + VT ++ + DF PLTV + Sbjct: 3 AKTYTTMLGGRELSIETGKLAKLASGSVTLRYGDTLLLVTA-QAREERSTLDFLPLTVEF 61 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +ER YA GRIPGSF RREGRP E L AR+ DR IRPLFP+G+ E QVI TV+S + Q Sbjct: 62 EERHYAVGRIPGSFHRREGRPGEHAILSARITDRQIRPLFPKGYRQETQVIITVLSADQQ 121 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 PD++ IGASAALSLS IP+NGP RVG I+ +YV+NPT D+L S LDLVVAGT Sbjct: 122 NAPDVLGAIGASAALSLSDIPWNGPTACVRVGMIDGEYVINPTSDQLTRSSLDLVVAGTR 181 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE-PVNEAL 242 AV MVE+ AQ +SE+ ++GA+ F H + Q V+ I + E G+ ++++ + ++ L Sbjct: 182 DAVNMVEAGAQGVSEETLVGAIEFAHRELQGVLDLIETMRAEVGREKFNFLVDSDLSTDL 241 Query: 243 NARVAALAEAR-LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENE----LGEIL 297 ++ A A L DA T KQER A + ++ IA + + E E L Sbjct: 242 VPELSEAARAAGLRDALLTTKKQERSANLKALRDRLIAERVPDPEAAGAAEQIEALKAAF 301 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 +EK +R +L + R DGR +R + + LPR HGSA+FTRGETQ L TLG Sbjct: 302 AKVEKQELRRLILQEDLRADGRNSKTVRPIWIEARPLPRAHGSAIFTRGETQVLGVTTLG 361 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 T RD ++D L GE D FL HYNFPPYS GE VG RRE+GHG LAKR + AV+P Sbjct: 362 TERDELLVDNLTGETNDRFLLHYNFPPYSTGEVKRVGGQSRREVGHGNLAKRAIRAVLPA 421 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 D FPY +RVV E+ ESNGSSSMA+VC +L+LMDAGVPI+A VAG+AMGLV EG+ Y + Sbjct: 422 FDDFPYVIRVVGEVLESNGSSSMATVCAGTLSLMDAGVPIQAPVAGVAMGLVMEGEQYRI 481 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILG ED LGDMDFKV G+ +G++ALQMDIK+ G+T IM+ AL QA+ ARLHILG M Sbjct: 482 LTDILGLEDALGDMDFKVCGTAEGVTALQMDIKVSGVTPAIMREALAQAREARLHILGKM 541 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + + APR ++S APRI T+KINP+ I VIG GG +R L E G + IE+DG ++I Sbjct: 542 AEVLPAPRPELSPTAPRILTLKINPELIGKVIGPGGKQVREL-EAMGAQVTIEEDGNIRI 600 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 + DG A+ ++IE +T E +VG Y G V + FGAFV + G++G++HISQ+++ Sbjct: 601 FSADGAAAEAVRQKIEGLTREAKVGEEYEGTVVKTAPFGAFVNLFPGQDGMLHISQMSEN 660 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 RV V D L +G + VK+ +D +G+I L + + AP P A + Sbjct: 661 RVNAVEDVLNVGDRLRVKIANIDDRGKIDL----IRPELEGKIAPREPRAARA 709 >UniRef50_B7IE23 Polyribonucleotide nucleotidyltransferase n=3 Tax=Bacteria RepID=PNP_THEAB Length = 697 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 306/687 (44%), Positives = 440/687 (64%), Gaps = 9/687 (1%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYA 69 + + ++ G +A+Q+ +V V D+ V T + G DF PLTV YQE+ YA Sbjct: 9 ELFGRKMIVQHGKVAKQSAGSVWVQFGDSVVLATANISDRTIEGVDFVPLTVEYQEKFYA 68 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIV 129 AG+IPG F +REG+PSE L ARLIDRPIRPLFP+ N+VQ+I TV+SV+ PD+ Sbjct: 69 AGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSVDGNTPPDVT 128 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMV 189 +I AS AL++S IPF G + R+GY++ ++V+ PT+++L++S+LD+VVAG++ A+ MV Sbjct: 129 GIIAASLALNISKIPFEGIVAGVRLGYVDGKFVVFPTEEQLEKSRLDIVVAGSKDAITMV 188 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAAL 249 E EA+ ++E++M+ A++ H+ + +I+ E++ + + + + NE L + + Sbjct: 189 EGEAKEVTEEEMVNALMVAHDAIKQIIEFEEEILSQFDVQKMEIEEPKPNETLIGKFEEM 248 Query: 250 A-EARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLD------ENELGEILHAIEK 302 E L D I +K ER A++ + + + + + E D E+ L E K Sbjct: 249 ISEEELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKILQESLLKEYFDERTK 308 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 ++R ++ R DGR+ D IR + GVLPRTHGSALFTRGETQ+L TLG + Sbjct: 309 KLMRKIIIEEGIRADGRKVDEIRPITCEVGVLPRTHGSALFTRGETQSLGIVTLGAPMEE 368 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q++D +M E T F+ HYNFPP+SVGE + P RREIGHG LA+R + AV+P ++FP Sbjct: 369 QIVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKAVVPSEEEFP 428 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 Y VRVVSEI ESNGSSSMA+VC SLALMDAGVPI+ VAG+AMGL+ E VVL+DI Sbjct: 429 YVVRVVSEILESNGSSSMATVCSGSLALMDAGVPIRTHVAGVAMGLIIEDGQEVVLTDIQ 488 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDH GDMDFKVAG+R+GI+A QMD K+ G+ +E+++ AL QAK AR+ IL +M I Sbjct: 489 GLEDHWGDMDFKVAGTRNGITAFQMDCKVAGVGEELLKRALQQAKEARMKILDIMFNTIE 548 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATD 601 PR +S +AP I TI+I+P K+ ++IG GG VI+++ +E I I+D G V I D Sbjct: 549 KPRESLSPYAPLIVTIEIDPMKVGELIGPGGKVIKSIIKEYDVEISIDDTTGKVSIYGKD 608 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEK 661 +K AI I+ IT +IEVG V+ GK+TRI +G FV + GK GL H S++ + + Sbjct: 609 QKKVNEAIEYIKTITKDIEVGDVFEGKITRIEPYGIFVELMPGKIGLAHSSKLGED-SKN 667 Query: 662 VTDYLQMGQEVPVKVLEVDRQGRIRLS 688 + ++G + V V+ +D GRI+L Sbjct: 668 FKEKYKIGDTIKVIVVNIDENGRIQLG 694 >UniRef50_Q9S7G6 Polynucleotide phosphorylase n=36 Tax=cellular organisms RepID=Q9S7G6_ARATH Length = 991 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 297/711 (41%), Positives = 446/711 (62%), Gaps = 12/711 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L +F+ G V+ ETG +AR A +V++ MD+T V TV K P +DF PLT Sbjct: 49 ILESFKEEFEVGSRVVSFETGKIARFANGSVVLGMDETKVLSTVTCAKTDSP-RDFLPLT 107 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+YQE+ YA G IP ++ RREG P E E L RLIDRPIRPLFP GF +EVQ++A+V+S Sbjct: 108 VDYQEKQYAQGLIPNTYMRREGAPKERELLCGRLIDRPIRPLFPTGFYHEVQIMASVLSS 167 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 + + +PDI+A +SAAL LS +P+ GPIG R+G I Q+V+NPT DEL S L+L+ A Sbjct: 168 DGKQDPDILAANASSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYA 227 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 T +M++ +++ +SE + A+ H + + L ++AGK + +++ +++ Sbjct: 228 CTRDKTMMIDVQSREISEKDLAAALRLAHPEAVKYLDPQIRLAEKAGKQKKEYKLSMLSD 287 Query: 241 ALNARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 +VA LA R+ + K ER +D I + E + + L + + Sbjct: 288 KTLEKVADLAATRIESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVD 347 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K VVRSR+++ R+DGR D +R + + LP HGSALF+RG+TQ L T TLG Sbjct: 348 TVRKKVVRSRMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGA 407 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 +AQ LD L+G F+ HY+FPPY E G G RRE+GHG LA++ +LAV+P Sbjct: 408 PAEAQSLDSLVGPPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPE 467 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 + FPYT+R+ SE+ S+GS+SMASVCG S+ALMDAG+P++A VAG+++GL+ + D Sbjct: 468 EAFPYTIRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGE 527 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +++DILG EDHLGDMDFK+AG+RDG++A+Q+DIK GI +I+ +L A+ ARL Sbjct: 528 IKDYRIVTDILGLEDHLGDMDFKIAGTRDGVTAIQLDIKPAGIPLDIVCESLENAREARL 587 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL ME+ IN+PRG ++PR+ T+K + D ++ +IG G + R + ETG + I D Sbjct: 588 QILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLSI-D 646 Query: 592 DGTVKIAATDGEKAKHAIRRIEEIT-AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 +GT+ I A + + + A +++ I E+ VG VY G V+ I ++GAFV GG++GL+H Sbjct: 647 NGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQGLLH 706 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 +S+++ + V KV+D L +GQ + +E D +G I+LS K + + A Sbjct: 707 MSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLPKPKRKPA 757 >UniRef50_A9NGE2 Polyribonucleotide nucleotidyltransferase n=5 Tax=Acholeplasmataceae RepID=PNP_ACHLI Length = 715 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 340/716 (47%), Positives = 454/716 (63%), Gaps = 25/716 (3%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 ++ V + + +E G +A+QA A M+ DT V T V + K DFFPL V Sbjct: 1 MSKQVFETTLAGKPLRVEVGEIAKQANGAAMIYYGDTVVLSTAVAKAKV-GQTDFFPLMV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 Y E+ YAAG+IPG FFRREGRPSE ETL +RLIDRP+RPLF +G+ NEVQV+ TV+S + Sbjct: 60 IYAEKQYAAGKIPGGFFRREGRPSEVETLTSRLIDRPLRPLFDDGYRNEVQVVNTVLSSD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 P+ + + AM+G+S AL +S IPF GPI A VG I+ Q+VLNP+ ++L S +DL+VAG Sbjct: 120 PEASSQMAAMLGSSIALEISNIPFMGPIAGAHVGRIDGQFVLNPSSEQLNVSDIDLIVAG 179 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T+ A+ MVE+ A+ +SE+ ML A++FGHE + + + K G + + + +N+A Sbjct: 180 TKDAINMVEAGAKQVSEEVMLEAILFGHEAIKELCAFQETIKKAFGVEKVEPELLSLNQA 239 Query: 242 LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLL---------------AEDE 286 + V A L A + DKQERY +D IK E +A A+ + Sbjct: 240 IFDEVFAYKGKELVKAVSLVDKQERYDVIDAIKDEVVAHFEQRNFWMTVDGKEVLDADQK 299 Query: 287 TLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG 346 N++ L I VR + + R DGR D IR L +LPRTHGSALFTRG Sbjct: 300 KELMNQVKVSLDRIVTKEVRRLITEDKVRPDGRGLDEIRPLASSVDLLPRTHGSALFTRG 359 Query: 347 ETQALVTATLGTARDAQVLDELMGER-TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGR 405 +TQAL TLG+ + Q++D L E T F+ HYNFPP+SVGETG G+P RREIGHG Sbjct: 360 QTQALGIVTLGSLNENQIIDGLEQETVTKRFMLHYNFPPFSVGETGRYGAPGRREIGHGA 419 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 L +R +L V+P D+FPY +RVVSEITESNGSSS A++C S+ALM AGVPIKA VAGIA Sbjct: 420 LGERALLQVLPSEDEFPYAIRVVSEITESNGSSSQATICVGSMALMAAGVPIKAPVAGIA 479 Query: 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 MGL+ +G++Y +LSDI G EDH GDMDFKVAG++DGI+ALQMDIKI+GIT EIM+ AL Q Sbjct: 480 MGLIMDGEHYSILSDIQGMEDHEGDMDFKVAGTKDGITALQMDIKIQGITTEIMKEALEQ 539 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTE-ETG 584 A+ RLHIL M I+ R ++S FAP++ I+INPDKI+DVIG GG +I + E Sbjct: 540 ARKGRLHILSHMNTVISETRTELSAFAPKVKMIRINPDKIRDVIGAGGKIITQIIEDHNN 599 Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD-------FGA 637 I+IE DG V I TD IE + E +VG +Y KVTR++ G Sbjct: 600 VKIDIEQDGRVFIMHTDSAWLNKTAAYIESLVREAKVGELYEAKVTRLLMDKDGKKIQGV 659 Query: 638 FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 F I G EGLVHIS+ +R E + +++G ++ VKV+++D +GR+ LS K+A Sbjct: 660 FAEIFPGTEGLVHISKWEKERTESLDGKVKVGDQILVKVVKIDERGRVDLSRKDAL 715 >UniRef50_B1ZS98 Polyribonucleotide nucleotidyltransferase n=7 Tax=Chlamydiae/Verrucomicrobia group RepID=PNP_OPITP Length = 730 Score = 727 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 321/714 (44%), Positives = 447/714 (62%), Gaps = 23/714 (3%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + +T TG +A+ A AV V + +T VFVT + KPGQD+FPLTV+Y+ Sbjct: 3 QKYSVTVPELGITFSTGSIAQLANGAVNVQVGETNVFVTACVAQTTKPGQDWFPLTVDYR 62 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ AAGR PG +F+REGRPSE E L +RL DRP RPLFPEGF+NEVQ+I + S + Sbjct: 63 EKYAAAGRFPGGYFKREGRPSEKEILTSRLCDRPCRPLFPEGFLNEVQIIGQLFSADLVN 122 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 DI + GASAAL++S IP+NGPI A RV I ++V NPT D++ S LDL+ G E Sbjct: 123 ESDISMVNGASAALAISDIPWNGPIAAVRVAEIEGKFVANPTIDQMFASSLDLIYVGNEK 182 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNA 244 +LM+E A + E++ + A+ FGHE Q +++ I ELV + GKP+ + Sbjct: 183 DMLMIEGSADQIPEERFIEALAFGHESIQPILKAIKELVAQCGKPKGTFPLVGATPEART 242 Query: 245 RVAALA-EARLSDAYRITDKQERYAQVDVIKSETIATLLAE--DETLDENELGEILHAIE 301 + + RL +A +K R V ++K E A L AE + + +L + ++ Sbjct: 243 IIERVVPTERLIEAIFGKEKAVRANAVKLLKEEAKAALTAELGEGKFTDVDLNVVFEDLQ 302 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 R VL R DGR + IR L + GVLPR HGSA+F RG+TQ + TLG +D Sbjct: 303 YKAYRKTVLERGVRADGRGQKDIRPLQAQVGVLPRVHGSAMFQRGDTQNIALTTLGPTKD 362 Query: 362 AQVLDEL-MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 AQ LD L G ++ +FL HYNFPP+SVGETG P RREIGHG LA+R ++ V+P D Sbjct: 363 AQDLDALTGGVKSKSFLLHYNFPPFSVGETGRFTGPGRREIGHGALAERSLVPVLPPEDV 422 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------DN 474 FPY++RVVSEI SNGS+SMAS+CG L+LMDAGVPI A VAGI+ GL+ + + Sbjct: 423 FPYSIRVVSEIMASNGSTSMASICGGCLSLMDAGVPIIAPVAGISCGLMTQNASDGSIEK 482 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 +V ++DILG+EDH GDMDFK+AG+ GI+ Q+D+KI G+ EI + A+ QA+ AR+ IL Sbjct: 483 WVTITDILGEEDHFGDMDFKLAGTSKGITGFQLDLKINGLPFEIAKTAIMQARDARMEIL 542 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI--EDD 592 VM ++ APR D+S++APRI TI+I+P+KI +IG GG IR +TE TG I+I +D Sbjct: 543 KVMLGSLPAPRADLSKYAPRIQTIQIDPEKIGLLIGPGGKTIRRITETTGAQIDIAEDDS 602 Query: 593 GTVKIAATDGEKAKHAIRRIEEITAE----------IEVGRVYTGKVTRIVDFGAFVAIG 642 G V + + + E AI+ I+ + IEVG++YTG+VT + +FG FV Sbjct: 603 GKVFVYSNNAEAMNRAIQEIDSLCGGGGPGGSKGPAIEVGKIYTGRVTGVKEFGCFVECT 662 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 G EGL H+S++AD RV + D ++MG + VK + +D + G++RLS K A ++ Sbjct: 663 PGNEGLCHVSELADFRVRRTEDVVKMGDSITVKCIGIDERSGKVRLSRKAAMKE 716 >UniRef50_B5Y8I4 Polyribonucleotide nucleotidyltransferase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=PNP_COPPD Length = 697 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 302/693 (43%), Positives = 426/693 (61%), Gaps = 2/693 (0%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 I V ++G +A QA AV+ DT TV+ + K DFFPLTV+ Sbjct: 5 KKIEVTGTVAGKKVIFQSGFLALQANGAVLARFGDTVALSTVLMSSEPKLDIDFFPLTVD 64 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+E++YA G+IPG FF++EGRP++ E L ARLIDR IRP+FP+G NEVQV+ +++ + Sbjct: 65 YEEKSYAVGKIPGGFFKKEGRPTDMEILKARLIDRSIRPMFPDGMRNEVQVLNMILAADM 124 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + PDIVA+ G +AAL++S IP I RVGYI+ +YVLNPT E+ ES+LDLVVAGT Sbjct: 125 ENPPDIVALNGTAAALAVSDIPIPELIAGVRVGYIDGEYVLNPTFAEMSESQLDLVVAGT 184 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 +++M+E+ A + + ++G + F E + +I I EL ++ G+P+ + + Sbjct: 185 RDSIVMIEAGAAEVDKSILIGGLKFAQEGIRQIIDLIAELKEKVGRPKAEITVVSFPQEQ 244 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 302 + E R A KQER V +K +L LDE + +EK Sbjct: 245 LDFMR-NHEDRFRAALITPIKQERERAVSELKKALFQEMLEVFPDLDEAMFNLMFGEVEK 303 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 VVR+ + + R+DGR D IR L + VLP+ HGS LF RG+TQ L T TLG+ D Sbjct: 304 EVVRAYMKSTRKRVDGRAFDEIRPLYAESSVLPKVHGSGLFIRGQTQVLSTVTLGSFSDV 363 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 Q +D + E F+ Y+FPP+S GE P RREIGHG L +R + ++P + FP Sbjct: 364 QFIDAIGLEEFKRFMHQYDFPPFSTGEVKPRRGPSRREIGHGALVERALSYLIPSEEVFP 423 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 YT+RVVSE+ ESNGS+SMAS C +S+ALM AGVP+ V GIAMGL++ D VVL+DI Sbjct: 424 YTIRVVSEVLESNGSTSMASTCASSIALMSAGVPMARHVGGIAMGLIEYNDENVVLTDIQ 483 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G EDHLGDMDFKVAG+R+GI+ALQ+D+K++GI+ E + A++QA+ AR IL V+ AI Sbjct: 484 GLEDHLGDMDFKVAGTREGITALQLDVKVKGISVETLDKAIDQAEVARSKILDVLYDAIP 543 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 +PR +SE APRI I+I DKI +VIG GG ++ +T+ETG TI+I +DG + Sbjct: 544 SPRP-LSETAPRIVKIEIPVDKIGEVIGPGGRNVKRITQETGATIDIREDGVAFVKGLTD 602 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 E A +++E I + EVG T +V R+ A V I GK GL+H+S++++ R+ + Sbjct: 603 ESVNMAKQQVEMIVKDPEVGEELTARVVRVTPSYAIVEIAPGKTGLLHVSEVSETRIRSL 662 Query: 663 TDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 695 D L +GQ + V V E D +GR+R S KE + Sbjct: 663 EDVLSVGQTIKVWVKEKDGEGRLRFSAKEKKSE 695 >UniRef50_Q2GJV5 Polyribonucleotide nucleotidyltransferase n=138 Tax=cellular organisms RepID=PNP_ANAPZ Length = 838 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 332/719 (46%), Positives = 480/719 (66%), Gaps = 13/719 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 M + + ++G ++T+E+G +ARQA AV+V T+V TVV +K+K DF PLT Sbjct: 1 MFDITRKCVEWGDRSLTIESGKIARQAGGAVVVDYGGTSVLATVV-SQKSKEAVDFLPLT 59 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V + ++YA G+IPG FF+REG+PS+ ETLI+R+IDR IRPLFP GF +EV V+ ++S Sbjct: 60 VQFLAKSYAVGKIPGGFFKREGKPSDRETLISRIIDRSIRPLFPSGFSDEVAVVCNLLSY 119 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLV 178 + P+ VA+IGASAAL++SGIPF+ P+ AR+GYI + Y+LNP+ DEL S LD+ Sbjct: 120 DASSPPETVALIGASAALAISGIPFHCPVAGARIGYIRGEGRYILNPSADELSVSALDMF 179 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK-PRWDWQPEP 237 A T+ ++LMVESEA L+E +MLGA+ FGHE + +I+ I E +EA K ++ P Sbjct: 180 YARTDTSILMVESEAHELTEAEMLGALQFGHEHCEEIIKVIGEFAEEARKCAPAEFVPCD 239 Query: 238 VNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDE------- 290 ++ + + + + R AY +K+ R A++D +++ L + + E Sbjct: 240 LST-IIDSIGSDYKERFLVAYSEKEKKARVAKLDAVRASLTEDLRVKFLSESEGGSKYIA 298 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 ++ + E+++VR RVL + RIDGR D IR +++ ++ + HGSALFTRG+TQA Sbjct: 299 QDIVYAMKTFERSLVRERVLESKSRIDGRAYDQIRNIEIEVDLISKAHGSALFTRGDTQA 358 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 LV LGT +D Q++D G++ + FL HYNFPPY+VGE + P RREIGHG+LA R Sbjct: 359 LVITALGTPQDEQIVDGFDGDKRERFLLHYNFPPYAVGEASALRPPGRREIGHGKLAWRA 418 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 + V+P FPYT+RVVSEITES+GSSSMA+VCGASLALMD GVP+K++VAGIAMGL+K Sbjct: 419 IHPVLPSKADFPYTIRVVSEITESDGSSSMATVCGASLALMDTGVPLKSSVAGIAMGLIK 478 Query: 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 EGD Y +LSDILGDED+LGDMDFKVAG+R+GI+ALQMD+K++GI ++ AL+QAK R Sbjct: 479 EGDRYAILSDILGDEDYLGDMDFKVAGTREGITALQMDMKVKGIDFAVLGTALDQAKEGR 538 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 I+ M++ I RG + E PR+ ++ I+ KIK+VIG GG +R + E+TG IEI Sbjct: 539 FFIIEKMDRVIKESRGAVREHVPRMESMLIDKGKIKNVIGAGGKNVREICEKTGAKIEIS 598 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 DGTV I A E + A I I +E EVG++Y+G+V + +GAFV G ++GLVH Sbjct: 599 QDGTVMIYAVGREAIESAKDMITGIVSEPEVGKIYSGEVCELAKYGAFVTFLGARKGLVH 658 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 IS+I ++ + V D L +G +V V V+++D+ I+LS++ +++ E A ++ Sbjct: 659 ISEIRNEHINAVADVLAVGDKVKVLVIDMDKD-HIQLSMRRIDQETGDQVDCELYAPQR 716 >UniRef50_Q72ER6 Polyribonucleotide nucleotidyltransferase n=17 Tax=Deltaproteobacteria RepID=PNP_DESVH Length = 760 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 333/718 (46%), Positives = 468/718 (65%), Gaps = 12/718 (1%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 + N + G + ETG +A QA AV + T V VT Q + FFPLT Sbjct: 4 IFNAMRVTATVGGKEIVFETGRLANQADGAVWIQCGGTVVLVTACSQATDR-DLGFFPLT 62 Query: 61 VNYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 V Y E+ YAAGRIPGSFFRRE GRPSE ETL++RLIDRPIRPLFP+G +EVQV+A V+S Sbjct: 63 VEYSEKMYAAGRIPGSFFRREIGRPSERETLVSRLIDRPIRPLFPKGLKDEVQVLANVIS 122 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + + D++A+ GAS AL LS IPF+GP+ AR+G I+ Q+V+NPT E++ S L++V+ Sbjct: 123 SDQNNDSDVLAVTGASTALGLSSIPFDGPVAGARIGRIDGQFVINPTIKEMERSDLNIVL 182 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 A + AV+MVE EA + E ++ A+ +GH++ Q +I +L + AGK + ++ + Sbjct: 183 AASRDAVVMVEGEASFVPEAVIVEALEWGHKEIQPLIDAQLKLREMAGKAKREFTAPVED 242 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE----DETLDENELGE 295 L ARVAALA A L A RI +K R +K + + L+A+ ++T +G+ Sbjct: 243 ADLAARVAALATADLDVALRIPEKMARKDARKAVKEKVMEALVADPAYAEDTTPLRAVGD 302 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 IL A+EK +VR R++ RIDGR+ +R + + G+LPR HGSALF RGET++LV AT Sbjct: 303 ILSALEKRIVRERIVREGRRIDGRDTTTVRPILIEAGILPRAHGSALFARGETKSLVVAT 362 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LG++ D Q +D L G+ T F+ HYNF PY VGE V RREIGHG LA++ + ++ Sbjct: 363 LGSSTDEQRMDSLTGDVTKRFMLHYNFAPYCVGEVKPVR-VSRREIGHGALAEKALRPIL 421 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 P + FP+T+RVV+E ESNGSSSMA+VCG L+LMDAGVPI A VAG+AMGL+KEGD Y Sbjct: 422 PLGEDFPFTLRVVAETMESNGSSSMAAVCGGCLSLMDAGVPITAPVAGVAMGLIKEGDQY 481 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 VVL+DILGDED LGDMDFK+AG+ +GI+A+QMDIK++G+ ++M A+ QA+ ARLHILG Sbjct: 482 VVLTDILGDEDALGDMDFKIAGTSEGITAVQMDIKVKGLPTDVMARAMQQARDARLHILG 541 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 M + + APR ++S +AP+ + +NPD I+ +IG GG I+A+T TG +I+IED G V Sbjct: 542 EMGKVLEAPRAELSAYAPQHAEVFVNPDIIRIIIGPGGKNIKAITATTGASIDIEDSGRV 601 Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 I A E + A ++ ++G+ YTGKV ++++ GA V I E LVHISQ+ Sbjct: 602 SIFAPTLEAMEMAREMVQYYDQRADIGKNYTGKVRKVLEIGAIVEILPNLEALVHISQLD 661 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ----SQPAAAPEAPAAEQ 709 RVE+ +D ++G+++ VKV+E++ RIR S K + P+ + Sbjct: 662 TNRVEQASDVARLGEDMVVKVIEINGD-RIRASRKAVLLEEQGIEWKPEDTARPSGPR 718 >UniRef50_Q8GZQ3 Polynucleotide phosphorylase n=19 Tax=cellular organisms RepID=Q8GZQ3_ARATH Length = 922 Score = 717 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 301/766 (39%), Positives = 433/766 (56%), Gaps = 60/766 (7%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N + K +G + +ETG+M RQA++AV V+ +T V+ +V DF PL V+ Sbjct: 86 NHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVH 145 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G FF+REGR + E LI RLIDRP+RP P+GF NE Q+++ V+S + Sbjct: 146 YQERFSAVGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDG 205 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 PD +A+ A A++LS +P I RVG I ++++NPT E++ES+LDL +AGT Sbjct: 206 LHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLIGGEFIVNPTVKEMEESQLDLFLAGT 265 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + A+L +E + L E+ +L AV G + Q I L K+ GKP+ L Sbjct: 266 DTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRLPPPEL 325 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN----------- 291 V LA L+ A +I K R + ++ + + L + +DE Sbjct: 326 YKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDL 385 Query: 292 --------------------------------------ELGEILHAIEKNVVRSRVLAGE 313 ++ + + ++R R++ G Sbjct: 386 LEDEDEDEEVVPEGEVDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGG 445 Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR D IR ++ R G+LPR HGS LFTRGETQAL TLG + AQ +D L G Sbjct: 446 KRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDE 505 Query: 374 -DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 F Y FPP SVGE G +G+P RREIGHG LA+R + ++P D FPYT+RV S + Sbjct: 506 YKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVI 565 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY------VVLSDILGDED 486 ESNGSSSMASVCG LAL DAGVP+K +VAGIAMG+V + + + ++LSDI G ED Sbjct: 566 ESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAED 625 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 GDMDFKVAG+ DG++A QMDIK+ GIT EIM+ AL QAK R HIL M + P Sbjct: 626 ASGDMDFKVAGNEDGVTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTL 685 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT-IEIEDDGTVKIAATDGEKA 605 +S++AP I +K++P K+ +IG GG ++++ EE+G I+++DDGTVKI A D Sbjct: 686 SLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMAIDVASL 745 Query: 606 KHAIRRIEEITAEIEVGRVYT-GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + A I +T VG +Y ++ + +GAFV I G+EGL HIS+++ + + K D Sbjct: 746 ERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPED 805 Query: 665 YLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ--PAAAPEAPAAE 708 ++G + VK++EV+ +G++RLS++ +S+ + + PA + Sbjct: 806 AYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPAGD 851 >UniRef50_Q0SM46 Polyribonucleotide nucleotidyltransferase n=24 Tax=Spirochaetaceae RepID=PNP_BORAP Length = 722 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 297/715 (41%), Positives = 433/715 (60%), Gaps = 31/715 (4%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + K + G+ + ETG MA+QA +V+ + ++V TV + DF PL+V Y Sbjct: 3 KILKLKIGRDELVFETGFMAKQANGSVLATYGGSSVLATVCCSNNVREDLDFVPLSVEYN 62 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAG+IPG F +REG+P + E L++RLIDRP+RPLF + F E+QVI T ++ + Sbjct: 63 EKYYAAGKIPGGFIKREGKPKDKEILVSRLIDRPMRPLFDKRFGREIQVIPTTLATDQLN 122 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 PDIV M A A+ LS IPFNGPI A R+ Y+N ++++NP+ +E+ +S LD+VVAG+ Sbjct: 123 PPDIVGMNAAFTAVFLSDIPFNGPIAAVRMVYLNGKFIVNPSFEEIHDSDLDIVVAGSLN 182 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG-KPRWDWQPEPVNEALN 243 + MVE A +SED +L A+ HE + + E + G K + E Sbjct: 183 GITMVEGGANEVSEDILLSAIDSAHEYIKQICNAQKEFLDIVGEKEKLPLAFEEKIFEFK 242 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL--LAEDETLDENELGEILHAIE 301 + A L +A + K R + ++++++ L + + +E+ + E Sbjct: 243 EELRDFIYADLKEACFVKGKLNRDKAITLLRNKSYEHFSSLEKLDDSNESLFYKAFDDFE 302 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K +VR+ +L + R DGR + IR + +L RTHGS+LFTRGETQAL TLGT+ D Sbjct: 303 KEIVRNSILNDKIRTDGRTPNEIRDILAEVDILSRTHGSSLFTRGETQALAVTTLGTSID 362 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 Q++D++ G++ F+ HYNFPP+SVGETG + RREIGHG LA+R + +++P + F Sbjct: 363 EQIMDDIDGDKRLNFMLHYNFPPFSVGETGRL-MTGRREIGHGHLAQRALESMIPGKNDF 421 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 PYT+RVVSEI ESNGSSSMA+VC S++LM AGVP+K VAGIAMGL+ EGD YVVLSDI Sbjct: 422 PYTIRVVSEILESNGSSSMATVCAGSMSLMSAGVPVKRQVAGIAMGLISEGDKYVVLSDI 481 Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 LG+EDHLGDMDFKVAG+ +GI+ QMDIKIE +TK++M+ AL QA+ R+HIL +M I Sbjct: 482 LGEEDHLGDMDFKVAGTENGITGFQMDIKIENVTKQLMRDALEQARVGRIHILSIMNSVI 541 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD 601 + R IS++AP+I ++I+ DKI VIG G ++A+T+E ++IE +G + + D Sbjct: 542 SNSRVGISKYAPKIIQLQIDIDKISLVIGSTGKTVKAITDEFEVKVQIEQNGKIILFGDD 601 Query: 602 GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI------SQIA 655 K + A +IE I E +VG +Y G V +I FGAF+ + KEG + S+ Sbjct: 602 DFKMQKAKEKIESIVREPKVGEIYEGTVKKINSFGAFIELTPTKEGFLSTRLKSRDSKYG 661 Query: 656 DKRVEKVTDY---------------------LQMGQEVPVKVLEVDRQGRIRLSI 689 R Y L+ GQ + V+++++D+ G+I L I Sbjct: 662 SGRFGHGNRYSRFGSGGDNIRGNAGLVRPPKLEEGQRIKVRIVDIDKFGKIDLEI 716 >UniRef50_Q7V606 Polyribonucleotide nucleotidyltransferase n=50 Tax=cellular organisms RepID=PNP_PROMM Length = 723 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 326/717 (45%), Positives = 463/717 (64%), Gaps = 14/717 (1%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + + + + L TG A QA +VM+ DTAV VT + + G DF PL Sbjct: 1 MQGQTQSISFDGREIRLTTGRYAPQAGGSVMMECGDTAVLVTAT-RSTGREGIDFLPLIC 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+ER YAAGRIPGSF RREGRP E TLIARLIDRP+RPLFP +++Q++AT +S++ Sbjct: 60 DYEERLYAAGRIPGSFMRREGRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCLSLD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 +V D++A+ GAS A L+ IPF GP+ A RVG + D +VLNP+ E++ LDLVVAG Sbjct: 120 ERVPADVLAVTGASMATLLASIPFQGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAG 179 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEA 241 T V+MVE+ A L + ++ A+ FG+E +I+ ++K+AG + +P ++ Sbjct: 180 TPDGVVMVEAGANQLPQGDVIEAIDFGYEAVCELIKAQQTILKDAGIKQVQPEPPTQDQD 239 Query: 242 --LNARVAALAEARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDET--------LD 289 L+ + + + + + K ER +++D IK++T + + E + Sbjct: 240 TKLSTYLEKNCSKSIGEVLKQFEQTKAERDSKLDAIKAKTAEAIDSLKEDDAVRKSVNAN 299 Query: 290 ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGET 348 L A+ K ++R +++ R+DGR+ D +R + GVLP R HGS LF RG T Sbjct: 300 SKVLSNNFKALTKKLMREQIIKQGKRVDGRKLDEVRPISSAAGVLPKRVHGSGLFQRGLT 359 Query: 349 QALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK 408 Q L TATLGT DAQ +D+L T+L HYNFPPYSVGET + SP RRE+GHG LA+ Sbjct: 360 QVLSTATLGTPSDAQEMDDLNPGPEKTYLHHYNFPPYSVGETRPMRSPGRREVGHGSLAE 419 Query: 409 RGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 R ++ V+P D FPY +RVVSE+ SNGS+SM SVCG++LALMDAGVP+KA V+G AMGL Sbjct: 420 RAIIPVLPPKDSFPYVLRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGL 479 Query: 469 VKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKG 528 +KE +L+DI G ED LGDMDFKVAG++DGI+ALQMD+KI G+ + + A+NQA+ Sbjct: 480 IKEDAEIRILTDIQGIEDFLGDMDFKVAGTKDGITALQMDMKITGLPVKTIAEAVNQARP 539 Query: 529 ARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIE 588 AR+HIL M +AI+APR +S APR+ + +I+P+ I VIG GG I+ +TE T T I+ Sbjct: 540 ARIHILEKMLEAIDAPRTTLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKID 599 Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 IED G V IA+ DG A+ A R IE +T ++ G V+TG +TRI+ GAFV I GKEG+ Sbjct: 600 IEDGGIVTIASHDGAAAEAAQRIIEGLTRKVNEGEVFTGTITRIIPIGAFVEILPGKEGM 659 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAP 705 +HISQ+++ RVEKV D +++G +V V++ E+D +GRI L+++ + + + AP Sbjct: 660 IHISQLSEARVEKVDDVVKVGDQVTVRIREIDNRGRINLTLRGVPQNGEETQSEPAP 716 >UniRef50_C7MNH4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) n=7 Tax=Coriobacteriaceae RepID=C7MNH4_CRYCD Length = 742 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 333/713 (46%), Positives = 448/713 (62%), Gaps = 5/713 (0%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + +V +F+ + LETG +A+QAT AV+V+ +T VT V K+ K DFFPLTV Sbjct: 1 MKKVVEEFELYGKSYRLETGELAKQATGAVLVTQGETTCLVTAVVSKEEK-DYDFFPLTV 59 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 ++ E+ YA GRIPG + +REG+ S+ TL AR+IDRPIRP FP+GF EV ++AT + Sbjct: 60 DFMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFPDGFKQEVHIVATTFVAD 119 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI--NDQYVLNPTQDELKESKLDLVV 179 Q PD + + GASAAL G PF+GP R+ ++++NPT E +ES L+L + Sbjct: 120 GQNPPDCICVGGASAALLAGGAPFDGPAACVRIARNVETGEFIVNPTYAEQEESDLELTI 179 Query: 180 AGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVN 239 AGT + MVE+ A +SE+ ML A+ FG E + + ++ + Sbjct: 180 AGTADYISMVEAGANEVSEEDMLAAMNFGQEAIAAFCDAQQRFLDQLDCTPLEYAIHTAD 239 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIA-TLLAEDETLDENELGEILH 298 + RV A EA ++ A R DK R A+V+ +K+ E+ +++ L Sbjct: 240 PRIAERVNA-HEAEMAAALRDADKLSRIAKVEALKAAVRESDFSDEERAAWASDIAAALK 298 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 A+EK +R ++ R+DGR D IR L +R G LPR HGS LF RG+TQAL TLGT Sbjct: 299 ALEKRAMRVMIIETGERVDGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGT 358 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 R+ Q LD + ++ YNFPPY GE G +G+PKRREIGHG LA+R ++ V+P Sbjct: 359 LREGQRLDTIDPSEGKRYMHQYNFPPYCTGEVGRIGAPKRREIGHGALAERALIPVLPSE 418 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D FPY +RVVSEI ESNGSSSMAS CG++LALMDAGVPI A V+GIAMGL+KEGD V+L Sbjct: 419 DDFPYAIRVVSEILESNGSSSMASTCGSTLALMDAGVPITAPVSGIAMGLIKEGDETVIL 478 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 SDI G ED LGDMDFKV G+ GI+ALQMD K G++ EI+ AL QAK R IL M Sbjct: 479 SDIQGLEDFLGDMDFKVTGTARGITALQMDNKARGLSTEILGRALAQAKEGRAFILSAML 538 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIA 598 + I+ PR ++SEFAPRI TIKI +KI+DVIG GG VIR L +ETG TIE+E+DGTV IA Sbjct: 539 EQISEPRAELSEFAPRIETIKIPVEKIRDVIGTGGKVIRGLQDETGATIEVEEDGTVHIA 598 Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 A +G + A + I +I E EVG +Y G+V I DFGAFV + GK+GL+HIS++A+ R Sbjct: 599 AVEGPAGEAAKQAILDIIKEPEVGEIYDGEVVGIKDFGAFVKLTAGKDGLLHISRMANGR 658 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V +V D L +G V V+V+EV G+I L + + Q ++ P + + Sbjct: 659 VGQVEDVLNLGDAVKVEVIEVGDNGKISLDRIDKPDAPQGSSRPRRDIDSRSD 711 >UniRef50_C9RL26 Polyribonucleotide nucleotidyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RL26_FIBSS Length = 744 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 334/710 (47%), Positives = 451/710 (63%), Gaps = 24/710 (3%) Query: 1 MLNPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL 59 ML+P +T ETG +A+QA + + M D V TV ++ DFFPL Sbjct: 13 MLDPKEVSVNLPDGRVITFETGRIAKQARGSAVAKMGDAFVLSTVCYGEE--KDGDFFPL 70 Query: 60 TVNYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 TV Y+E++YAAGR+PG + +RE GRPS+ E L AR+IDRPIRP+FPE F EVQVI V+ Sbjct: 71 TVEYREKSYAAGRLPGGYSKREPGRPSDEEILSARIIDRPIRPMFPENFTREVQVIVQVL 130 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 S + + PD++ + AS ++ LS +PF + A RV ++ Q ++ PT D++ + LDLV Sbjct: 131 SSDKKFAPDVLGVSAASLSIGLSELPFEQQVAAVRVAVVDGQNIVMPTYDQVAVADLDLV 190 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 VAGTE +V MVE A +SED M+GA++ GHE + + + ELV KP+ + +P+ V Sbjct: 191 VAGTEDSVCMVEGGAYEVSEDTMIGAILAGHEVIKQMCKAQQELVDRCAKPKMELKPKFV 250 Query: 239 NEA---LNARVAALAEARL-SDAYRITDKQERYAQVDVIKSETIA-----TLLAEDETLD 289 E L A V + L D + K + Y + + + + ++ E E + Sbjct: 251 GEEHDKLVATVKDVVWDELNKDVHSNMVKTDFYPAMADLCARMLEDPRILAIIGEGEAQN 310 Query: 290 ---ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRG 346 + I +E+ +R +L R+DGR +R +++ GVLPR HGSA+F RG Sbjct: 311 AQLAADAKGIFSDLERTAMREMILNEGVRLDGRTTTEVRPIEIEMGVLPRAHGSAIFQRG 370 Query: 347 ETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 ETQ LV TLGT D Q + L GE +++ HYNFPP+SVGE +G RREIGHG L Sbjct: 371 ETQGLVICTLGTKADEQRFESLQGEGAKSYMLHYNFPPFSVGECKKLG-LSRREIGHGHL 429 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 A+R + AV+P + FPYT+RVVSEI ESNGSSSMASVCG L+LMDAGVPIKA VAGIAM Sbjct: 430 AERSLAAVLPLPEDFPYTIRVVSEIMESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAM 489 Query: 467 GLV------KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 GL+ KEG +LSDI G EDHLGDMDFKV G+ +GI+A QMDIKI GIT E+M+ Sbjct: 490 GLISEKGSVKEGGKIKILSDITGTEDHLGDMDFKVTGTAEGITAFQMDIKIRGITPELMR 549 Query: 521 VALNQAKGARLHILGVMEQ-AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL 579 AL QA+ R+HILG M + + APR +SE AP + ++I KI+DVIG GGSVI+ + Sbjct: 550 EALEQARQGRIHILGRMAELGLPAPRPHVSEKAPTMLKMRIPTTKIRDVIGSGGSVIKGM 609 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +TG TI I+D+G + IAA G+ + R IEE+TAE E GR Y GKV I FGAFV Sbjct: 610 QAQTGCTINIDDNGNIDIAAPTGKAGEVCRRMIEELTAEPEPGRKYKGKVKTIQPFGAFV 669 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 I G++GLVHIS++AD+RV+KV D + +G EV V L VD +G+++LS+ Sbjct: 670 EILPGRDGLVHISELADRRVDKVEDVVHVGDEVEVLCLGVDPKGKVKLSM 719 >UniRef50_A8F725 Polyribonucleotide nucleotidyltransferase n=21 Tax=Bacteria RepID=PNP_THELT Length = 710 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 312/690 (45%), Positives = 429/690 (62%), Gaps = 11/690 (1%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNY 63 K + +E G +A+QA AV+ + DT V T V A G DF PLTV + Sbjct: 1 MKTWKREILGREFIVEHGKVAKQANGAVVARIGDTTVLATAVMSDSAVEGIDFVPLTVEF 60 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 QER YAAG+IPG F +REG+PSE L AR IDRPIRPLFP+ NEVQV+ TV+S + Sbjct: 61 QERFYAAGKIPGGFIKREGKPSEMAILSARTIDRPIRPLFPKHLRNEVQVVVTVISTDSV 120 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 PDIV + AS AL++S IPFNG + A RVG ++ + VL PT+D+L++S LD+VVAGTE Sbjct: 121 NTPDIVGVFAASLALNISDIPFNGIVAAVRVGLVDGKIVLFPTEDQLQKSLLDIVVAGTE 180 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 + MVE EA+ +SE QML A++ H+ + +I E++ + + + E + Sbjct: 181 DTITMVEGEAKEVSESQMLQALLKAHDAIKQIIDFEKEILSYFNIEKAQIAEKTLPEEIE 240 Query: 244 ARVAALA-EARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 302 + L L + I K+ R + + L A T EL +L + Sbjct: 241 KEFSQLLDGNELRERLLIQGKKARSNALSEYFKKIYEILEARYGTEKIEELSVLLKDKYE 300 Query: 303 NV----VRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 +R ++ R+D R+ IR + TG+LPR HGSALFTRGETQ+L TLG Sbjct: 301 EALKYKMRRIIVEEGTRLDMRKPKDIRPITCETGLLPRVHGSALFTRGETQSLGIVTLGA 360 Query: 359 ARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 D Q++D L+ E T F+ HYNFPP+S GE + P RREIGHG LA+R + V+PD Sbjct: 361 PMDEQIIDSLLEEGTKRFMLHYNFPPFSTGEVKPLRGPSRREIGHGHLAERALKFVLPDE 420 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 D+FPYT+R+VSEI ESNGSSSMA+VC SLALMDAGVPI VAG+AMGL+ E D+ +VL Sbjct: 421 DRFPYTIRIVSEILESNGSSSMATVCSGSLALMDAGVPISKHVAGVAMGLILEKDSQIVL 480 Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 +DILG EDH GDMDFKVAG+RDGI+A QMD K+ G++ ++++ ALNQAK ARL++L + Sbjct: 481 TDILGAEDHWGDMDFKVAGTRDGITAFQMDCKVSGVSADLLERALNQAKEARLYVLEKLY 540 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-DGTVKI 597 + I+ PR +S++AP I I I+P K+ ++IG GG +I+AL ++ I ++D G V + Sbjct: 541 ETISKPRDTLSKYAPVIKVISIDPSKVAEIIGPGGKIIKALIKDYDVKISVDDLTGKVSV 600 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 + EK AI +I I EI VG V++GKVTRI FG FV I GK GL+H S++ Sbjct: 601 IGGNEEKVDAAIEQINSILKEISVGDVFSGKVTRIEPFGVFVEISPGKVGLLHQSKL--- 657 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 + + ++G+ + VKV +D GR++L Sbjct: 658 -ITDLKTV-KIGETMRVKVSNIDNLGRLQL 685 >UniRef50_Q2S1P1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Salinibacter ruber DSM 13855 RepID=PNP_SALRD Length = 712 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 314/710 (44%), Positives = 458/710 (64%), Gaps = 11/710 (1%) Query: 3 NPIVRKFQY-GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 + ++ +++LETG +A+QA +V+ + DT V T +FFPLTV Sbjct: 4 EAHIEDIEFVPDRSLSLETGRIAKQADGSVVARLGDTMVLSTATLSDSVNES-NFFPLTV 62 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+E+ A G++PG F +REGRP++ ETL +RLIDR IRPLFP+GF ++V V+ V+S Sbjct: 63 DYREKFAAGGKVPGGFIKREGRPTDKETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAG 122 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 + D++A +G+SAAL LSG PF GP RVG ++ Y++NPT + +ES +DLVVAG Sbjct: 123 QDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTMQQTEESDIDLVVAG 182 Query: 182 TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP-RWDWQPEPVNE 240 E A++MVE EA+ +SE+ M+ A+ H + + + + LV++AG+P ++W+ + V E Sbjct: 183 KEDALVMVEGEAEEISEESMIEALDVAHRSIRRLCEGQHRLVEQAGEPDPFEWEADRVPE 242 Query: 241 ALNARVAALAEARLSDAYRIT-DKQERYAQVDVIKSETIATLLAE----DETLDENELGE 295 L R+ +++D K+ + + +K + + +L + E +++ + Sbjct: 243 QLVQRMREEYGPKVADHIHGPYSKETFHGGIGDLKDQAVDDVLGDASETPEGYTASDIRD 302 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 + +EK +R+ ++ RIDGR++ +R L + G LPR HGSA+FTRGETQ L + T Sbjct: 303 AIGEVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSIT 362 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LGT+ D Q +DE+ + +F HY FPP+SVGE + PKRREIGH LA+R + V+ Sbjct: 363 LGTSDDVQPVDEVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVI 422 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNY 475 P+ D+FPYT+R+ +++ ESNGSSSMASVC SLALMDAGVPI+ VAGIAMGLV+E D Sbjct: 423 PEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPIEKPVAGIAMGLVQEDDET 482 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 VL+DILG EDHLGDMDFK+ G+RDGI+A QMD+KIEG+++++M AL Q++ AR HIL Sbjct: 483 TVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDARHHILD 542 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD--- 592 ME+ I PR ++S APR+ + I+PD+I VIG GG V++++ EET T I +E++ Sbjct: 543 RMEETIAEPRAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEEGV 602 Query: 593 GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 G V IAAT+ A+ AI RI++I A E G Y G V I DFGAFV I K GL+H+S Sbjct: 603 GIVTIAATNQRDAEAAIERIKQIVAVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLHVS 662 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAP 702 +I VE V DYL++G +V V +LEV G++RL+ K + Sbjct: 663 EIDYDYVENVEDYLEVGDKVKVHLLEVHDDGKMRLTRKPFVSEENGEQNE 712 >UniRef50_D0WEI7 Polyribonucleotide nucleotidyltransferase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEI7_9ACTN Length = 769 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 317/700 (45%), Positives = 445/700 (63%), Gaps = 6/700 (0%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 +L + +F+ + ETG +A+QAT AV+V +T V VT V K+ K DFFPLT Sbjct: 30 ILEKVSLEFELYGKSYAFETGELAKQATGAVLVRQGETTVLVTSVISKEEK-DYDFFPLT 88 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V++ E+ YA GRIPG + +REGR S+ TL AR++DRPIRP F EGF EV V+AT ++ Sbjct: 89 VDFMEKMYAVGRIPGGYLKREGRASDKGTLTARMVDRPIRPGFAEGFKQEVHVVATTFAI 148 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLV 178 + + PD + + GASAAL ++ PF+GP+ R+ + ++++NPT E + S L+L Sbjct: 149 DGENAPDCMCVGGASAALLIASAPFDGPVACVRIARNAETREFIVNPTYAEQETSDLELT 208 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 +AGT+ + MVE+ A + E+ ML A+ FG E + E + + +W Sbjct: 209 IAGTKDYISMVEAGADQVGEEDMLAAMNFGQEAIAAFCEKQAEFLSMVDIQKREWPIHVP 268 Query: 239 NEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIA-TLLAEDETLDENELGEIL 297 + ++ RV A +S A + DKQ R A+V+ +K+ E+ +++ Sbjct: 269 DASIAERVNA-HYDAMSAALKDADKQSRIAKVEELKASIKENDFSDEERAAWASDIAAAC 327 Query: 298 HAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 A+EK+ +R ++ R DGR + IR L +R G LPR HGS LF RG+TQ + ATLG Sbjct: 328 KALEKHAMRRMIIETGERADGRAPEEIRPLYIRPGYLPRVHGSGLFQRGQTQVMSVATLG 387 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 +AQ LD + + T ++ YNFPPY GE G +G+PKRRE+GHG LA+R +L V+P+ Sbjct: 388 LLNEAQRLDTIDPQTTRRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPN 447 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 D+FPY++RVVSE+ ESNGSSSMAS CG+ LALMDAGVPIKA V+G+AMGL+KE D V+ Sbjct: 448 EDEFPYSIRVVSEVLESNGSSSMASTCGSCLALMDAGVPIKAPVSGVAMGLIKEDDGVVI 507 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G ED LGDMDFKV G+ +GI+ALQMD K G++ EI+ AL QAK R HIL M Sbjct: 508 LSDIQGLEDFLGDMDFKVTGTPEGITALQMDNKARGLSTEILGRALAQAKEGRAHILSAM 567 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 I APR ++ + APRI TIKI +KI++VIGKGG IR + + TG +IEI++DGTV I Sbjct: 568 LDEIAAPRAELRDTAPRIETIKIPVEKIREVIGKGGETIRGIQDATGASIEIQEDGTVHI 627 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 AA D A++ +++I E EVG VY G V I FGAFV + K+GL+HIS++A+ Sbjct: 628 AAVDQAAGAAAMQAVKDIVKEPEVGEVYEGTVVGIQSFGAFVKLTPNKDGLLHISRMANG 687 Query: 658 RVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQS 696 RV +V D L +G V V+V+E+D + G++ L E + Sbjct: 688 RVGQVEDVLNLGDTVKVEVIEIDSKTGKVSLDRLEKPDAP 727 >UniRef50_A0LYC0 Polyribonucleotide nucleotidyltransferase n=86 Tax=cellular organisms RepID=PNP_GRAFK Length = 750 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 301/726 (41%), Positives = 437/726 (60%), Gaps = 19/726 (2%) Query: 1 MLNPIVRK-FQYG-QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58 M+ ++ G +++ETG +A+QA +V+V + TVV + K F P Sbjct: 1 MIPKTFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYEQK-DLPFLP 59 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 LTV+Y+E+ AAGR PG FF+RE RPS+GE L RL+DR +RPLFP+ + E QV+ ++ Sbjct: 60 LTVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYSAETQVMIQLM 119 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 S + +V P+ +A + ASAA+ LS PF I ARVG +N ++++NPT+ +L ES ++++ Sbjct: 120 SHDDEVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLAESDIEMM 179 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG-KPRWDWQPEP 237 + + +V+MVE E +SE+ M+ A+ F HE +V I+ + L G K +++ P Sbjct: 180 IGASADSVMMVEGEMDEISEEDMVEAIKFAHEAIKVQIEAQHRLADAFGRKEVREYEDAP 239 Query: 238 VNEALNARVAALAEARLSDAYR-ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEI 296 NE L +V +A ++ + + K+ER IK E A+ E+ + + + Sbjct: 240 ENEDLVKKVHDMAYDKVYAVAKAGSSKKERTDAFASIKEEVKASFSEEELEEYGDLVSDY 299 Query: 297 LHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 EK VR L R+DGR+ D +R + LP HGS++FTRGETQAL T TL Sbjct: 300 YRKAEKAAVRDLTLNEGIRLDGRKTDEVRDIWCEVDYLPSVHGSSIFTRGETQALATVTL 359 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMP 416 GT+RDA +D E + F HYNFPP+ GE + RRE+GHG LA+R + ++P Sbjct: 360 GTSRDANQIDMPSHEGEERFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRALKGMIP 419 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--N 474 ++ PYTVRVVSE+ ESNGSSSMA+VC ++ALMDAGV +K V+GIAMGL+ +GD Sbjct: 420 --EECPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVQMKKPVSGIAMGLISDGDSGK 477 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 Y VLSDILGDEDHLGDMDFKV G+ DGI+A QMDIK++G++ EI+ AL QA+ RLHIL Sbjct: 478 YAVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQARDGRLHIL 537 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-- 592 + I P D+ +AP++ T +I + I +IG GG VI+ L +ETGTTI I +D Sbjct: 538 EKLTDTIAQPNADVKAYAPKMITRRIPNEFIGALIGPGGKVIQELQKETGTTIVINEDPV 597 Query: 593 ---GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI--GGGKEG 647 G ++I T+ E I +IE IT + E G VY KV +++DFGA V G E Sbjct: 598 TEEGIIEILGTEQEGIDKVIAKIESITFKPEKGSVYEVKVIKVLDFGAVVEYMDAPGNEV 657 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQ--PAAAPEA 704 L+HIS++A +R V D L++G + VK +D + + ++S K E+ + AP Sbjct: 658 LLHISELAWERTNDVNDVLKLGDVLDVKYFGLDPKTRKDKVSRKALMEKPEGYKERAPRD 717 Query: 705 PAAEQG 710 ++G Sbjct: 718 RDDKRG 723 >UniRef50_B7G0I4 Predicted protein n=2 Tax=Bacillariophyta RepID=B7G0I4_PHATR Length = 830 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 288/703 (40%), Positives = 412/703 (58%), Gaps = 22/703 (3%) Query: 15 TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIP 74 + +ETG + RQA AV ++ D+ ++ T K K DF PL+V+YQER +AG Sbjct: 89 PICIETGKIGRQAAGAVTLTRGDSVLYATTSHDKDPKEEIDFCPLSVDYQERFSSAGLTS 148 Query: 75 GSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 G + +R+GRP+E E L RLIDRP+RPL G+ +E Q+++ V+S + + + D +A+I + Sbjct: 149 GGYNKRDGRPAEHEILTCRLIDRPLRPLIQSGWRHETQLLSWVLSYDGERSCDPLAIIAS 208 Query: 135 SAALSLSGIPFNGPIGAARVGYIN-DQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEA 193 +++L +S +P + P+ A +VG + V+NPT +++ SKL+L+VAGTE AVLM+E A Sbjct: 209 ASSLFISDVPLHKPVAAVQVGMKDDGTLVVNPTNLQMETSKLNLMVAGTEEAVLMIEGAA 268 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR 253 L E M+ AV GHE QV+ Q + L K AGK + + E L RV L R Sbjct: 269 DFLPESTMIQAVKTGHEAIQVLCQGLTALGKVAGKEKKLDTIKATPENLQIRVDELFSDR 328 Query: 254 LSDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAG 312 + D + K+ + + + + + L+ + + + + R Sbjct: 329 IDDMWSSGLGKEAQGKIMTDLYTAVVGELIEDYPGET-VAIKGAFKDLLCRRMFFRAREE 387 Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R DGR IR L + TG+LPR HGSALFTRGETQ + T TLG + Q +++L G Sbjct: 388 GLRCDGRGPTDIRQLTMETGLLPRVHGSALFTRGETQCVATTTLGGSGMRQKIEKLDGTD 447 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 F Y FPP VGETG VG+P RRE+GHG LA+R ++ +P + FPYT+RV S IT Sbjct: 448 EKRFYLQYTFPPSCVGETGRVGAPGRREVGHGNLAERALIPTIPALADFPYTIRVESLIT 507 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE------GDNYVVLSDILGDED 486 ES+GSSSMASVCG SLALMDAGVPIKA VAGIAMG++ +N V+LSDILG ED Sbjct: 508 ESHGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGMLLGDKGGVSDENAVILSDILGTED 567 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 LG MDFKVAG R GIS Q+DIK EG+T E M+ AL QA+ RLH+L ME+ I +PR Sbjct: 568 ALGTMDFKVAGDRVGISTFQLDIKCEGLTLETMESALEQARTGRLHLLSEMEKVIASPRE 627 Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEKA 605 ++ P++ + I + I +IG GG IRA+ E+ +++ ++G V++++ D K Sbjct: 628 ELPATVPKMMSFSIPVEAIGKIIGPGGKQIRAIIEDFELVNMDVGEEGGVQLSSFDTAKM 687 Query: 606 KHAIRRIEEITAE-IEVGRVYTGKVTRIVDFGAFVAIG--------GGKEGLVHISQIAD 656 A I + G YTGK+T I FG F+ I G EGLVH+S++A Sbjct: 688 GEAQTFITTLVRPEPVEGETYTGKITGIHPFGVFLEILPGAEDGSYPGLEGLVHVSELAH 747 Query: 657 KRVEKVTDYLQMG--QEVPVKVLEVDRQGRIRLSIKEATEQSQ 697 +RV +++ +E+ VK L D+ G+++LS K E+ Sbjct: 748 ERVRNCEGFMKSMNVEELTVKYLGKDK-GKLQLSRKALLEEQG 789 >UniRef50_Q8TCS8 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=56 Tax=cellular organisms RepID=PNPT1_HUMAN Length = 783 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 278/710 (39%), Positives = 401/710 (56%), Gaps = 26/710 (3%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 AAGRIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ P Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT-EAA 185 D++A+ GAS ALSLS IP+NGP+GA R+G I+ +YV+NPT+ E+ S L+LVVAG ++ Sbjct: 166 DVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQ 225 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNA 244 ++M+E+ A+ + + A+ G + Q +IQ I +LVKE G + + + + Sbjct: 226 IVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVK 285 Query: 245 RVAALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEK 302 LA RL + DK R V+ I+ +T L + D E+ E + + K Sbjct: 286 YTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAK 345 Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 V RS VL R DGR+ +R + + HGSALF RG+TQ L T T + Sbjct: 346 EVFRSIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESG 405 Query: 363 ----QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDM 418 QV+ + G + F+ HY FPPY+ E G V RRE+GHG LA++ + V+P Sbjct: 406 IKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPR- 464 Query: 419 DKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD----- 473 FP+T+RV SE+ ESNGSSSMAS CG SLALMD+GVPI +AVAG+A+GLV + D Sbjct: 465 -DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGE 523 Query: 474 --NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 +Y +L+DILG ED+ GDMDFK+AG+ GI+ALQ DIK+ GI +I+ A+ QA A+ Sbjct: 524 IEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKK 583 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 IL +M + I+ PR E P + T+++ K +G GG ++ L ETG TI D Sbjct: 584 EILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD 643 Query: 592 DGTVKIAATDGEKAKHAIRRIEEI-----TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 + T + A A I EI ++E G VYT +T I D G V + Sbjct: 644 EETFSVFAPTPSAMHEARDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMT 703 Query: 647 G-LVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 L+H +Q+ ++++ T L++GQE+ VK D GR+RLS K Sbjct: 704 AVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQ 753 >UniRef50_Q4JV61 Polyribonucleotide nucleotidyltransferase n=37 Tax=Actinobacteria (class) RepID=PNP_CORJK Length = 764 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 312/739 (42%), Positives = 431/739 (58%), Gaps = 55/739 (7%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLT 60 + + +G ++ ETG++ARQA AV +D DT + T ++ + G DFFPLT Sbjct: 22 VEATIDNGDFGTRSIRFETGLLARQADGAVTAYLDEDTMLLSTTAASRQPREGIDFFPLT 81 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +ER Y+ GRIPGSFFRREGRP L ARLIDRP+RP F G NEVQVI TV+S+ Sbjct: 82 VDVEERMYSVGRIPGSFFRREGRPGTDAILAARLIDRPLRPTFVRGLRNEVQVIVTVLSM 141 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI------NDQYVLNPTQDELKESK 174 +P+ D++A+ GASA+ LSG+P +GP+G R+ + Q+V PT+++ +++ Sbjct: 142 DPKDRYDVLAINGASASTQLSGLPVSGPVGGVRMALVVDSDHPEGQWVAFPTREQEEKAI 201 Query: 175 LDLVVAGT------------------------EAAVLMVESEAQL------------LSE 198 +LVVAG AV+MVE+ A +E Sbjct: 202 FELVVAGRVTEPVKPARGRGRGRGKGAGSSEPNVAVMMVEAGATDNVVERIAEGAPAPTE 261 Query: 199 DQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVNEALNARVAALAEARLSDA 257 + + + + + N L K +++ P E + A V A A L D Sbjct: 262 EVVAQGIEAAKPFIATLCEAQNALAKAVDAETREFELFPPYGEDVFASVQAEALDALEDI 321 Query: 258 YRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRID 317 I DKQER + + LL E E E+ + + K VVR R+L RID Sbjct: 322 MAIADKQERDEALAANMQANVDELLPEFP-EREAEIRAAHNEVTKAVVRRRILEDGFRID 380 Query: 318 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFL 377 GR+ IR L + ++PR HGSALF RGETQ L TL + Q +D L E + ++ Sbjct: 381 GRDSTTIRDLGIVVQLIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLGPETSKRYI 440 Query: 378 FHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGS 437 HYNFPPYS GETG VGSPKRREIGHG LA+R + V+P D FPYT+R VSE SNGS Sbjct: 441 HHYNFPPYSTGETGRVGSPKRREIGHGALAERALTPVIPSRDDFPYTIRQVSEALSSNGS 500 Query: 438 SSMASVCGASLALMDAGVPIKAAVAGIAMGLVK------EGDNYVVLSDILGDEDHLGDM 491 +SM SVC ++L+L +AGVP+KA VAGIAMGLV D YV L+DILG ED GDM Sbjct: 501 TSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVTGKVGKAGKDKYVTLTDILGAEDAFGDM 560 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF 551 DFKVAG+ D ++ALQ+D K++GI +++ AL QA+ ARL IL +ME+AI D+S+ Sbjct: 561 DFKVAGTPDFVTALQLDTKLDGIPSDVLAEALQQARTARLEILQLMEEAI-DSPDDMSDL 619 Query: 552 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 AP I +I I +KI +VIG G I +TEETG I IEDDGTV I+A GE A+ A + Sbjct: 620 APHITSINIPQNKIGEVIGPKGKTINQITEETGANITIEDDGTVFISAVGGESAREAEEK 679 Query: 612 IEEIT--AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQM 668 I I + +VG + G V + FGAFV++ G++GL+HIS + D+R+E+V D + + Sbjct: 680 INAIANPQQPKVGDRFLGTVVKTTAFGAFVSLLPGRDGLIHISNLGGDRRIERVEDEVSV 739 Query: 669 GQEVPVKVLEVDRQGRIRL 687 G ++ V++ ++D +G+I L Sbjct: 740 GDKLEVEIADIDNRGKISL 758 >UniRef50_A0LV20 Polyribonucleotide nucleotidyltransferase n=63 Tax=Actinobacteria (class) RepID=PNP_ACIC1 Length = 782 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 310/713 (43%), Positives = 432/713 (60%), Gaps = 30/713 (4%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 ++ +G TV ETG +ARQA + + + DT V K+ + DFFPLTV+ Sbjct: 10 EAVIDNGSFGVRTVRFETGRLARQAGGSAVAYLGDTMVLSATTASKEPREQFDFFPLTVD 69 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 +ER YAAGRIPGSFFRREGRPSE L RLIDRP+RP F +G NEVQV+ TV++V+P Sbjct: 70 VEERLYAAGRIPGSFFRREGRPSEEAILTCRLIDRPLRPSFVKGLRNEVQVVVTVLAVDP 129 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + D+VA+ AS + L+G+PF+GPIG R+ +I+ +V PT EL+ + D+VVAG Sbjct: 130 EHLYDVVAINAASMSTLLAGLPFSGPIGGVRMAHIDGTWVAFPTYSELERATFDMVVAGR 189 Query: 183 -----EAAVLMVESEAQL------------LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + A++MVE+EA +E+ + G + + + +EL Sbjct: 190 VLPDGDVAIMMVEAEATEETIPLIREGAPAPTEEVVAGGLEAAKPFIRTLCAAQSELAAR 249 Query: 226 AGKPRWDWQPE-PVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAE 284 A KP ++ + + VAA ++ A I KQER A +D + + + L Sbjct: 250 AAKPVTEFPLFRDYEDDVYDAVAATVRDDVARALTIAGKQEREAALDEVANTALGRLGER 309 Query: 285 DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFT 344 E E+ L A+ K +VR R++ + RIDGR IR L G++PR HGSALF Sbjct: 310 F-AGREKEILAALRALTKKLVRERIIREKVRIDGRGLTDIRPLTAEVGIVPRVHGSALFE 368 Query: 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHG 404 RGETQ L TL R Q LD + ++ HYNFPPYS GE G VGSPKRREIGHG Sbjct: 369 RGETQILGVTTLNMLRMEQQLDTVSPRTKKRYMHHYNFPPYSTGEVGRVGSPKRREIGHG 428 Query: 405 RLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 LA+R ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L++AGVP++A VAGI Sbjct: 429 ALAERALIPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGI 488 Query: 465 AMGLVKEGDN----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 AMGL+ + + YV L+DILG ED GDMDFKVAG+RD ++ALQ+D K++GI ++ Sbjct: 489 AMGLISDTVDGETHYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPASVLA 548 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL QA+ ARL IL VM +AI+ P +S +APRI TIKI D+I VIG G +I + Sbjct: 549 AALPQAREARLTILDVMAKAISEPAP-MSPYAPRIITIKIPVDQIGAVIGPKGKIINQIQ 607 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTRIVDFGAF 638 ++TG I IEDDGT+ I AT+G A+ A I I EVG Y G V + FG F Sbjct: 608 DDTGAEITIEDDGTIYIGATEGTAAEAARAAISAIANPQLPEVGERYLGTVVKATPFGVF 667 Query: 639 VAIGGGKEGLVHISQIAD----KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 V++ GK+GL+HIS++ +RVE V D L++G ++ V++ ++D +G++ L Sbjct: 668 VSLLPGKDGLLHISELRKMAGGRRVENVEDVLKVGDKIQVEIRDIDARGKLSL 720 >UniRef50_B7GNH2 Polyribonucleotide nucleotidyltransferase n=30 Tax=Actinobacteridae RepID=PNP_BIFLI Length = 914 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 303/722 (41%), Positives = 424/722 (58%), Gaps = 35/722 (4%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD-TAVFVTVVGQKKAKPGQDFFPLT 60 + ++ +G+ T+ ETG +A+QA AV +DD + + T K DFFPLT Sbjct: 9 VEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKENYDFFPLT 68 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +E+ YAAG+IPGSFFRREGRPS L R+IDRP+RPLFP NEVQV+ TV++V Sbjct: 69 VDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQVVETVLAV 128 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 180 NP D++A+ ASA+ +SG+PF GP+ R+ I+ Q+V P E + + ++VVA Sbjct: 129 NPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERERAVFEIVVA 188 Query: 181 GT-----EAAVLMVESEA-------------QLLSEDQMLGAVVFGHEQQQVVIQNINEL 222 G + A+ M+E+ A E+ + G + +V+ + +EL Sbjct: 189 GRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKVICEAQDEL 248 Query: 223 VKEAGKPRWDWQP-EPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATL 281 K A K ++Q + L AR+ +A L +A I +K R ++ IK L Sbjct: 249 KKIAAKETKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEIKEHVREVL 308 Query: 282 LAED----ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT 337 E + + ELG +++ +VR R+L + RIDGR IR L ++PR Sbjct: 309 ADEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSAEVDIVPRV 368 Query: 338 HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK 397 HGSALF RGETQ L TL + Q +D L G ++ ++ +Y PPYS GETG VGSPK Sbjct: 369 HGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGETGRVGSPK 428 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RREIGHG LA++ ++ V+P ++FPY +R VSE SNGS+SM SVC ++L+L+ AGVP+ Sbjct: 429 RREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLSLLAAGVPL 488 Query: 458 KAAVAGIAMGLVKEGDN----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 KA VAGIAMGLV + + L+DILG ED GDMDFKVAG+ + I+ALQ+D K++G Sbjct: 489 KAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITALQLDTKLDG 548 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 I +I+ AL QAK AR IL V+ + I ++SEFAPRI T + +KI +VIG G Sbjct: 549 IPADILAAALQQAKEARATILEVINECI-DGPAEMSEFAPRIITTSVPVEKIGEVIGPKG 607 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE--IEVGRVYTGKVTR 631 +I + E+TG I IEDDGTV I++ GE AK A I+ I E G Y GKV + Sbjct: 608 KMINQIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGETYNGKVVK 667 Query: 632 IVDFGAFVAIGGGKEGLVHISQIAD----KRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 FGAFV + G +GL+HISQI + +R++ V D L+ G V V V VD +G+I L Sbjct: 668 TTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLREGDTVEVIVQGVDDRGKISL 727 Query: 688 SI 689 +I Sbjct: 728 AI 729 >UniRef50_C4LJ74 Polyribonucleotide nucleotidyltransferase n=28 Tax=Corynebacterineae RepID=PNP_CORK4 Length = 775 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 317/740 (42%), Positives = 433/740 (58%), Gaps = 56/740 (7%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMD-DTAVFVTVVGQKKAKPGQDFFPLT 60 + + +G T+ LETG +ARQA +V+ +D DT + T K + G DFFPLT Sbjct: 33 VEATIDNGDFGSRTIRLETGQLARQANGSVVAYLDEDTMMLSTTTASSKPREGFDFFPLT 92 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+ +ER YAAGRIPGSFFRREGRP L RLIDRP+RP F +G NEVQVI TV+S+ Sbjct: 93 VDVEERMYAAGRIPGSFFRREGRPGTDAILACRLIDRPLRPTFVKGLRNEVQVIVTVMSL 152 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI------NDQYVLNPTQDELKESK 174 +P+ D+VA+ ASA+ LSG+P +GP+G R+ I + Q+V PT+++ + + Sbjct: 153 DPKDMYDVVAINAASASTQLSGLPVSGPVGGVRMALIVDDDHEDGQWVAFPTREQHESAL 212 Query: 175 LDLVVAGT---------------------------EAAVLMVESEAQLL----------- 196 ++VVAG A++MVE+ A Sbjct: 213 FEMVVAGRLTDEQVPEKPRKGRRRGRKSSPRKKTDNVAIMMVEAGATETVVERVNDGAPA 272 Query: 197 -SEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVNEALNARVAALAEARL 254 +E + + + L + ++ P + A V + A+ R+ Sbjct: 273 PTESVVAEGIEAAKPFIAELCGAQQALRQAVDPETEEFPLFPPYGADVLAAVDSEAKGRI 332 Query: 255 SDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEP 314 SD I DKQER + +T+ LL E E E+ +A+ K VVRSR+LA Sbjct: 333 SDIMSIADKQERDEALSSDMDDTVEALLEEFP-EREAEIRAAHNAVTKEVVRSRILADGF 391 Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 RIDGR + IR LDV ++PR HGS+LF RGETQ L TL T + Q +D L Sbjct: 392 RIDGRGVEDIRDLDVEVDLVPRAHGSSLFQRGETQILGVTTLDTLKMEQQVDSLGPVDHR 451 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 ++ HYNFPPYS GETG VGSPKRREIGHG LA+R + ++P D FPYT+R VSE S Sbjct: 452 RYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALKPMIPSRDDFPYTIRQVSEALGS 511 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL----VKEGDNYVVLSDILGDEDHLGD 490 NGS+SM SVC ++L+L +AGVP+KA VAGIAMGL VK YV L+DILG ED GD Sbjct: 512 NGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEVKGKMTYVTLTDILGAEDAFGD 571 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 MDFKVAG+ D I+ALQ+D K++GI +++ AL QA+ ARL IL M + I+ P +S+ Sbjct: 572 MDFKVAGTEDFITALQLDTKLDGIPSDVLAGALKQAREARLEILNTMAEVIDEP-DPMSD 630 Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR 610 +APRI TI + KI +VIG G I +TE+TG + IEDDGTV I+AT G A+ A+ Sbjct: 631 YAPRITTISVPVSKIGEVIGPKGKNINQITEDTGARVSIEDDGTVFISATSGGSAEAAVD 690 Query: 611 RIEEITAE--IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI-ADKRVEKVTDYLQ 667 RI EI +VG + G V + FGAFV+I ++GLVHIS++ KR+EKV D + Sbjct: 691 RINEIANPQLPKVGERFLGTVVKTTAFGAFVSILPNRDGLVHISKLGGKKRIEKVEDVVN 750 Query: 668 MGQEVPVKVLEVDRQGRIRL 687 +G ++ V++ ++D +G+I L Sbjct: 751 VGDKLEVEIADIDNRGKISL 770 >UniRef50_Q1G2Y1 Chloroplast polyribonucleotide phosphorylase n=5 Tax=cellular organisms RepID=Q1G2Y1_CHLRE Length = 854 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 302/728 (41%), Positives = 420/728 (57%), Gaps = 37/728 (5%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + LETG + RQA A+M + +T ++ T F PLTVNY ER AAG Sbjct: 93 GGKEIKLETGEIGRQANGAIMATAGETMLYATACCSASPTGDGSFTPLTVNYAERFSAAG 152 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 R G F +R+GRP + E L++RL+DRPIRP+F +G+ N+ Q++ V+S + +P+ +A+ Sbjct: 153 RTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAI 212 Query: 132 IGASAALSLSGIPFNGPIGAARVGY-INDQYVLNPTQDELKESKLDLVVAGTEAAVLMVE 190 A+AAL +S IP + RVG + +++NPT +E++ S+LDL+VAGT AVLM+E Sbjct: 213 TAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGTRDAVLMIE 272 Query: 191 SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALA 250 L+E+QM+ A+ G E + + K+ GKP+ V E L +R+ L Sbjct: 273 GFCDFLTEEQMIEALGKGSEAIASLCDQMEAWAKKVGKPKRTDAVVTVPEELESRLMELV 332 Query: 251 EARLSDAYRIT-DKQERYAQVDVIKSETIATLLAEDETLDENE----------------- 292 L+ AY+ + K+ R A V ++ + L AE +E Sbjct: 333 GDSLTAAYKTSLSKEVRGAAVAEAQARALEALAAESGAASGSETVGGNGNGGGGRSYTPL 392 Query: 293 -LGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 351 + L A+E V+R VL + R DGR IR + R G+LPRTHGSALFTRGETQ++ Sbjct: 393 QISMALEAVESRVMRGLVLDEQVRADGRGVADIRPVTCRAGLLPRTHGSALFTRGETQSI 452 Query: 352 VTATLGTARDAQVLDEL-----MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRL 406 ATLG+A DA D + + F Y+FPP SVGETG G+P RRE+GHG L Sbjct: 453 CVATLGSANDALRSDTMRKPDGEDPESGRFYLQYHFPPSSVGETGRTGAPGRRELGHGEL 512 Query: 407 AKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM 466 A+R + ++PD +FPYTVRV S ITESNGSSSMASVCG LA+MDAGVPI VAGIAM Sbjct: 513 AQRALAPILPDPAQFPYTVRVESTITESNGSSSMASVCGGCLAMMDAGVPIARPVAGIAM 572 Query: 467 GLVKEGDN-YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQ 525 GL+ E + VLSDILG ED LGDMDFKVAG D I+A QMDIK+EGIT +IM AL Q Sbjct: 573 GLILESNGRNAVLSDILGSEDALGDMDFKVAGDHDAITAFQMDIKVEGITLDIMAKALQQ 632 Query: 526 AKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT 585 AK R HIL M + P +S APR+ ++I+PDK VIG GG VI+ + + +G Sbjct: 633 AKAGRRHILDQMAKCAPPPANTLSAHAPRMMRLQIDPDKKGAVIGSGGRVIKQIRDVSGA 692 Query: 586 T-IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK-VTRIVDFGAFVAIGG 643 T I+I++ G V + A + A AI ++ + ++ E G ++ K V + FG FV + Sbjct: 693 TAIDIDESGMVDVMAPSQDAAAKAIEFVKLLASDPEPGTIFRNKAVAGLAAFGCFVELCP 752 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 G++GLVH+S++ D V +++G + V V+ V G++ LS K Sbjct: 753 GRQGLVHVSELDDPAPTDVAAVVKVGDLMDVMVMGVADGGKLSLSRKAVQ---------R 803 Query: 704 APAAEQGE 711 E+ E Sbjct: 804 HDRGEEVE 811 >UniRef50_C1E1G7 Predicted protein n=2 Tax=Micromonas RepID=C1E1G7_9CHLO Length = 838 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 309/760 (40%), Positives = 440/760 (57%), Gaps = 53/760 (6%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 P + G+ VT+ETG + RQA AVMV+ +T ++ T+ + F PLTVN Sbjct: 50 TPKTLTLRIGESEVTVETGRIGRQANGAVMVTEGETVIYATICAGRDVTADGGFVPLTVN 109 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQER A GR G + +R+G E ETLI RL+DRP+RP+ P+G+ + Q++ V+S + Sbjct: 110 YQERYSAVGRTAGGYRKRDGGVRENETLIGRLVDRPLRPMIPKGWAYDTQILEWVLSYDG 169 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLVVA 180 + D +A+ AS A ++S +P PI RVG + + ++NPT ++++ S+LDLV+A Sbjct: 170 ARSTDALAITAASCAAAISDVPLKKPIAGVRVGLLPGETEPLINPTCEQMERSRLDLVLA 229 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GTE AV+M+E L+ +ML A+ GHE ++I+ K+ G+ + + E Sbjct: 230 GTEDAVMMIEGFGDFLTTQEMLYAIEKGHEAVANACRDIDAWAKDVGRVKNEAAVLVAPE 289 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAED--------------- 285 ++ V AL A L++A I+ KQ R A V+ I++ I +L D Sbjct: 290 GVDDAVRALVGAELAEAMAISVKQTRGAAVEGIRARAIESLAGGDDAKFTVSAVRRPAQS 349 Query: 286 -----------------------------ETLDENELGEILHAIEKNVVRSRVLAGEPRI 316 EN++ E N +RS + A R Sbjct: 350 LRFAFCALLLFSLFPPGPRAFSRPFVRLPPPALENDVRLACGRCESNALRSMIRANGVRQ 409 Query: 317 DGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTF 376 DGR+ +R + G+LPRTHGS+LFTRGETQA+ ATLG A DAQ +D L ++ F Sbjct: 410 DGRDTKTVRPITCSGGLLPRTHGSSLFTRGETQAIAAATLGGATDAQKVDGLGNDKDRRF 469 Query: 377 LFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 436 HY FPP SVGETG VG+ RRE+GHG LA+R ++ V+P D FP+TVR+ S ITESNG Sbjct: 470 YLHYFFPPSSVGETGRVGAASRREVGHGNLAERALMPVIPPYDDFPFTVRLESTITESNG 529 Query: 437 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE----GDNYVVLSDILGDEDHLGDMD 492 SSSMA+VC SLAL DAGVPI VAGIAMGL+ G+ V+L+DILG ED LGDMD Sbjct: 530 SSSMATVCAGSLALQDAGVPITRKVAGIAMGLILGDESAGEAPVILTDILGSEDALGDMD 589 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 FKVAG DGISA QMDIK+EGIT +++ AL A+ +HILG M++A AP G +S +A Sbjct: 590 FKVAGDGDGISAFQMDIKVEGITLAVLREALESARVGLVHILGEMDKADPAPAGRMSAYA 649 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEKAKHAIRR 611 P++ +++ I VIGKGG I+A+ E+T TI+I ++G V + + G A+ Sbjct: 650 PQVEVVEVPTKYIGKVIGKGGEQIKAICEQTKIDTIDINEEGVVTLTGSFGCDMPKAVEI 709 Query: 612 IEEITAEIEVGRVYT-GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 I +T E EVG+ Y +VT+++DFGAFV I G EGL H+S++ RV V D ++ GQ Sbjct: 710 IRSLTVEPEVGKTYRNARVTKVLDFGAFVEILPGVEGLCHVSELDVTRVANVRDVVEEGQ 769 Query: 671 EVPVKVLEVDRQGRIRLSIKE-ATEQSQPAAAPEAPAAEQ 709 + VK+LE + +G+ +LS + ++ E A+ Sbjct: 770 TIDVKLLETNERGQFKLSRRAVLLDEGGEKVRRELAEAKV 809 >UniRef50_C3Z2F7 Putative uncharacterized protein (Fragment) n=4 Tax=Coelomata RepID=C3Z2F7_BRAFL Length = 723 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 267/703 (37%), Positives = 392/703 (55%), Gaps = 27/703 (3%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + + TG AR A +V + DT+ VT V + + F PLTV+Y+++ AAGRI Sbjct: 12 RVMRISTGKFARFADGCAVVEIGDTSAMVTAVSRTRPS-SAGFLPLTVDYRQKAAAAGRI 70 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 P + RRE ++ E L++RLIDR IRPLFP G++ E QVI+ +++V+ +PDI ++ G Sbjct: 71 PTTHLRRELAQTDREILVSRLIDRSIRPLFPAGYMYETQVISNLLAVDGVNDPDIASING 130 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE-AAVLMVESE 192 AS AL+LS P+NGPIGA RVG ++D+YV+NPT+ +L SKL+LVV G E V+M+E Sbjct: 131 ASTALALSDCPWNGPIGAVRVGIVDDEYVINPTRRQLSRSKLNLVVTGAERNLVVMLEGS 190 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNARVAALAE 251 A+ + A+ G ++ Q +I+ I L KE GK + + E + + LA Sbjct: 191 AENVLLPDFQRAIKTGIKETQKIIRGIQTLQKEIGKEKRTPPKLFTPPEEILEQARQLAT 250 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 RL + K R V I++E L + + E + I K V R+ + Sbjct: 251 ERLQVVFTDATHHKFSRDNAVQEIRAEVEQKLKELFPEAEPFMINESISVITKQVFRNLI 310 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE-- 367 L R DGR+ +R + + HGSALF RG+TQ L T T + + + +D Sbjct: 311 LDTYQRCDGRDMTSLRDISCDVDLYKPLHGSALFQRGQTQVLSTVTFDSKQASLKMDPIA 370 Query: 368 --LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 L G + F+ HY FPPY+ ETG V S RRE+GHG LA+ + V+P FP+T+ Sbjct: 371 EILGGVKQKDFMLHYVFPPYATNETGRVSSNSRRELGHGALAENALKPVVPS--DFPFTI 428 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD--------NYVV 477 R+ +E+ ESNGSSSMAS C SLALMDAGVPI + VAG+A+GLV D +Y + Sbjct: 429 RLTAEVLESNGSSSMASACSGSLALMDAGVPISSPVAGVAIGLVTRTDPNNPTEIQDYKL 488 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L+DILG ED++GDMDFK+AG++ G++ALQ DIK+ G+ +I+ A QA A+ I+ +M Sbjct: 489 LTDILGIEDYMGDMDFKMAGTKKGVTALQADIKLPGLPLKIIMEATQQATMAKSDIINIM 548 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 +A+ PR E+ P +K+ K +G GG IR +T ETG TI D+ T + Sbjct: 549 NRALAKPRNTRKEYGPVSEQLKVPMAKRAQFVGPGGYNIRKITAETGVTITQVDEETFSV 608 Query: 598 AATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GLVHI 651 A + A I+++ +++ G +YT +T I + G V + + L+H Sbjct: 609 FAPNTAAMNEAREEIDQLLKDKREPQLDFGAIYTATITEIRESGVMVKLFPTMQPTLLHN 668 Query: 652 SQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEA 692 SQ+ +RV + +GQE+ VK D G +RLS K Sbjct: 669 SQLDHRRVSHPSALGFDVGQEMSVKYFGRDPATGMMRLSRKVL 711 >UniRef50_A4RTW2 Predicted protein n=4 Tax=cellular organisms RepID=A4RTW2_OSTLU Length = 823 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 299/712 (41%), Positives = 416/712 (58%), Gaps = 16/712 (2%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 + + G+ V LETG + QA AV S +T ++ T ++ F PLTVN Sbjct: 67 DARELVLRIGESEVRLETGKIGLQANGAVFASEGETVLYNTACASRECTGDGSFVPLTVN 126 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y ER AAGR G + +R+G E ETL ARL+DRPIRP+ +G+ E QV+ ++S + Sbjct: 127 YAERFSAAGRTSGGYKKRDGGLRENETLKARLVDRPIRPMMYKGWGYETQVLQWLMSFDA 186 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVA 180 + + D +A+ ASAAL++S IP P+ RVG + + V+NPT +++K+S+LDLV+A Sbjct: 187 ERSTDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPVVNPTSEQMKQSRLDLVLA 246 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 GT+ AVLM+E L+ D+ML A+ G E + I+ + + E Sbjct: 247 GTDEAVLMIEGFCDFLTTDEMLRAIEKGQEAVAKACKEIDAWAATVAPQKMMQKLIVQPE 306 Query: 241 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAI 300 ++ VAAL E L A + KQER A + + + L E + + + I Sbjct: 307 GVDEAVAALVEDELKQAIVVPIKQERGAMIGAARERAVEALQDEFQA---SAVINACGKI 363 Query: 301 EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR 360 E +R + R DGR MIR + G+LPRTHGS+LFTRGETQA+ ATLG ++ Sbjct: 364 ESRALRDVIRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQ 423 Query: 361 DAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 DAQ D++ F+ HY FPP SVGETG G RREIGHG LA+R ++ ++P + Sbjct: 424 DAQRQDDVEAGEDKRFMLHYFFPPSSVGETGRTGGASRREIGHGNLAERALMPILPSEED 483 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------- 473 FP+ ++ S ITESNGSSSMA+VC +LAL+DAGVPIK VAGIAMGL+ + Sbjct: 484 FPFVCKLESTITESNGSSSMATVCAGTLALLDAGVPIKRKVAGIAMGLILGSEAAGGGDE 543 Query: 474 -NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 +VL+DILG ED LGDMDFKVAG +DGI+A QMDIK+EGIT ++M+ AL +A+ +H Sbjct: 544 LEPIVLTDILGSEDALGDMDFKVAGDKDGITAFQMDIKVEGITIDVMKTALEEAQKGLVH 603 Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTT-IEIED 591 ILG ME+ AP G S++APRI +I + VIGKGG IR++ E+TG I++ Sbjct: 604 ILGEMEKCDPAPAGATSKYAPRIASIAVPEKYFGKVIGKGGETIRSIMEKTGAENIDVNK 663 Query: 592 DGT-VKIAATDGEKAKHAIRRIEEITAEIEVGRVYTG-KVTRIVDFGAFVAIGGGKEGLV 649 + V + AIR IE + E EVG++Y G V ++V+FG FV G EGLV Sbjct: 664 EKEMVFVTGGADADLDAAIRMIEGMIVEPEVGKIYRGCVVKKVVEFGCFVEYLPGLEGLV 723 Query: 650 HISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 HIS++ RV V+D G + VK++ VD +G+ LS KE + P A Sbjct: 724 HISELDVSRVPNVSDVTSEGAVMDVKIIAVDNRGKTSLSRKEVLLEENPELA 775 >UniRef50_B3QZG1 Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Phytoplasma mali AT RepID=PNP_PHYMT Length = 728 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 286/719 (39%), Positives = 432/719 (60%), Gaps = 30/719 (4%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 N V + + + + +E G ++RQA +VM+ DT + V K K +F PLTVN Sbjct: 9 NKKVFEIIFENNVLRIEIGEISRQANGSVMLFYKDTVILSVAVCGDK-KNSLNFLPLTVN 67 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 YQE+ YAAG+IPG F RREG+PS+ E L +RLIDR IRPLF + F NEVQ+I V+S +P Sbjct: 68 YQEKLYAAGKIPGGFLRREGKPSDQEILCSRLIDRTIRPLFSKNFKNEVQLINMVLSSDP 127 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 N + +A++G+S AL +S IPF P+ + VG I D ++NPT + + S L++AGT Sbjct: 128 DGNNENIALLGSSLALLISDIPFFEPVSSVCVGKIGDNLIINPTLSQRENSSFFLILAGT 187 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + ++ MVE ++ +SE+ L ++ FGHE + + E+ + GK + VN L Sbjct: 188 KDSLNMVEMSSKEISENNFLESIKFGHEIIKKLCLFQTEIANQIGKTKIKIPLHNVNNLL 247 Query: 243 NARVAALAEARLSDAYRITD-----------KQERYAQVDVIKSETIAT-------LLAE 284 + + + + K+ + ++ K + + L E Sbjct: 248 EVEIKDKYFSEIEMILKNKCNVNNVKKSDILKKLKENVLENYKEKFLNNKKDNFNLLDLE 307 Query: 285 DETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFT 344 ++ L NE+ I + + ++R +L R DGR IR + R +LPRTHGSALFT Sbjct: 308 NQKLYLNEVEIIFDFLVRTIIRETILKENIRPDGRNSSEIRSITSRIDILPRTHGSALFT 367 Query: 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHG 404 RG TQ+L TLGT R+++++D+L E F+ HYNFP ++VG G +P RREIGHG Sbjct: 368 RGGTQSLAIVTLGTLRESKIIDDLSDEVDKRFMLHYNFPAFAVGSVGRYLAPSRREIGHG 427 Query: 405 RLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 LA++ + V+P + FPY++RVVSEI +SNGSSS A++C +S+ALM AGVP+K+ VAG+ Sbjct: 428 MLAEKALECVLPSENDFPYSIRVVSEILDSNGSSSQATICASSMALMSAGVPLKSLVAGV 487 Query: 465 AMGLVKEG----DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 AMGL+ + ++Y +LSDI G ED+ GD+DFK+AG++ GI+ALQ+DIKI+GIT EI + Sbjct: 488 AMGLIVDDIDKINHYTILSDIEGLEDYQGDIDFKIAGTKVGITALQLDIKIKGITLEIFE 547 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 L QAK R+ IL ME+ IN R ++S++AP++ I I P+KI+D+IG GG +I + Sbjct: 548 KVLEQAKKDRIKILNEMEKVINKSRNEVSKYAPKVKMILIKPEKIRDIIGSGGKIINQII 607 Query: 581 EE-TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD----- 634 E+ I+I DG + I + E + I+ +I+V VY K+ R V Sbjct: 608 EKHDNVKIDIMQDGKIYIMHQNMEIVDLTVTYIQNFLKKIKVENVYEVKILRFVKDKMDK 667 Query: 635 -FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 FGA I G EG +HIS++ + +V+KV D L++GQ + VK ++++ +G+I LS K+ Sbjct: 668 TFGAIAEIFPGIEGFIHISKLENYKVDKVEDVLKIGQIILVKCIKINERGQIDLSKKDV 726 >UniRef50_A7RP27 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RP27_NEMVE Length = 710 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 248/712 (34%), Positives = 392/712 (55%), Gaps = 33/712 (4%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGR 72 + TG +A A + + +DT+V VT + KK F PL V+Y+E+ AA Sbjct: 1 SRQLKFSTGKLALLADGSTVTQYEDTSVLVTAISSKKPSEN-SFLPLVVDYKEKASAACL 59 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 IP +F RR+ +E E L+ R IDR +R LF +G+ + Q+I+ +++ + NPD+VA+ Sbjct: 60 IPTTFLRRDLLANEREILVCRRIDRSVRSLFMKGYTYDTQIISHLLAADRFNNPDVVAVN 119 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE 192 GASA+L+LS IP+ GP+GA R+G ++ Q V+NP + +L+ S+LDLVV +E+ ++MVE Sbjct: 120 GASASLALSSIPWRGPVGAVRIGDVDGQLVVNPLRQQLEHSQLDLVVTSSESKIVMVEGF 179 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEA 252 A+ + ++++ A+ + Q +IQ I EL AGK + + ++ L+ V Sbjct: 180 AKEVPDERLCEAIKLAFSEAQPIIQAIKELRSYAGKEKKHFDIISPSQQLSDAVEEWVSY 239 Query: 253 R---LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 + + +R ++ ++ E + + + + +A+ K+V R+ + Sbjct: 240 NRFTFKTSNVSFFQLQRDDRIFGLRDECVEIFQDQFPDSGPGLIEQAFNAVNKSVFRANI 299 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL- 368 L R DGR+ D +R +D + HGS+LF RGETQ TAT G+ A +D + Sbjct: 300 LEKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTIS 359 Query: 369 ---MGERTDTFLFHYNFPPYSVGETG-MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 G + F+ HY FPP+S E GS RREIGHG LA+R ++ V+P D+ P+T Sbjct: 360 EAVGGSKEKQFMLHYEFPPFSTNEVKQRRGSFDRREIGHGALAERALVPVLP--DELPFT 417 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK----------EGDN 474 +R+ +E+ SNGSSS+AS C SLA+MDAGVPIK+ VAG A GLV + DN Sbjct: 418 LRLTAEVLGSNGSSSLASACAGSLAMMDAGVPIKSHVAGSACGLVTSSDAEDASKRDIDN 477 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 Y +L+DILG ED+LGDMDFK+AG+R GI+ALQ D K+ G+ I++ A+ + R +L Sbjct: 478 YQLLTDILGIEDYLGDMDFKIAGTRQGITALQADFKVPGLPVAIVEEAIRRCSVDRAKVL 537 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 VME+ I R + P ++++ K +IG GG VIRAL +E G +I+ ++ Sbjct: 538 DVMEEVIPIAREFKKDNIPVSGSVRVPLSKRGRLIGTGGMVIRALQQELGVSIDQVEEEE 597 Query: 595 VKIAATDGEKAKHAIRRI----------EEITAEIEVGRVYTGKVTRIVDFGAFVAI-GG 643 + A D AI +I EE+T+ + G +Y GK+ + +G + + Sbjct: 598 FLVFAPDQTTYDEAISKINELLVDTNIFEELTSRLTEGAIYEGKIVEMRAYGLMLELFAD 657 Query: 644 GKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDRQGRIRLSIKEATE 694 L+H+ ++ RV + ++G V VK L +D +GR+ +S K Sbjct: 658 CPTVLLHVRELDHARVHRPEMLGFKVGDSVSVKYLGIDNKGRLNISRKALLP 709 >UniRef50_A7I002 Polyribonucleotide nucleotidyltransferase n=2 Tax=Campylobacter RepID=PNP_CAMHC Length = 711 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 278/722 (38%), Positives = 412/722 (57%), Gaps = 50/722 (6%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + + + E +A+QA A ++ + +T V TV ++ + +DF PLTV Y Sbjct: 1 MKYAVEVNNNVEIFEINKVAKQAAGACLMKVKNTVVLATV-ARENTQVEEDFLPLTVQYI 59 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E+ YAAGRIPG + +RE +P + ETL +R+IDR +RPLFP+G+ Q++ V+S +P++ Sbjct: 60 EKQYAAGRIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQIVVFVLSADPEI 119 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 + +V + AS AL LS IP P+ RVGYIND +V+NPT EL+ S LDL VAG + Sbjct: 120 DLQVVGLNAASVALYLSDIPMKAPVCGVRVGYINDSFVINPTNSELQNSALDLYVAGVKD 179 Query: 185 AVLMVESE-----------AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--W 231 +LM+E SED+M+ A+ F + KP Sbjct: 180 EMLMIEMRSLPNMNGENQNMNEFSEDKMVEAIDFASKAILAGSTAYENTFSALKKPDAAL 239 Query: 232 DWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN 291 +++PE +E + + + + A K ER ++D I ++ + + A +N Sbjct: 240 EYKPEVEDENIANFIEQNFTSDVQAAINQMAKSERATELDKIVNKIMQSETAIQNEWQKN 299 Query: 292 ELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQAL 351 + I+ ++ ++RS+++ R DGR D IR + + T +LP HGS LFTRG+TQAL Sbjct: 300 VVSNIIGKFKRKIIRSQIINERRRADGRALDEIRPISIETNILPNAHGSCLFTRGQTQAL 359 Query: 352 VTATLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKR 409 V TLG DAQV D L ++ F+F YNFP + VGE + SP RRE+GHG LAKR Sbjct: 360 VVTTLGGETDAQVSDSLTSNTPISERFMFQYNFPGFCVGEASPLKSPGRRELGHGNLAKR 419 Query: 410 GVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 + +P + P +R VSEI ESNGSSSMASVCG SL+L AGV VAG+AMGL+ Sbjct: 420 ALTPSVPLNN--PQVIRTVSEILESNGSSSMASVCGGSLSLRAAGVSTLKLVAGVAMGLI 477 Query: 470 KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 E D + +L+DI+G EDH GDMDFKVAG+R+GI+ALQMDIK+ GI+ EI++ ALNQAK Sbjct: 478 FEDDKHAILTDIMGLEDHDGDMDFKVAGTREGITALQMDIKLGGISLEILREALNQAKDG 537 Query: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589 R +IL +ME A + + E P+I ++P+K+ D+IG+GG I+ L ++ +I++ Sbjct: 538 RNYILNLMEVANDDIIIN-EEILPKIEIFGVDPNKMVDIIGQGGKTIKELIDKYEVSIDL 596 Query: 590 E-DDGTVKIAATDGEKAKHAIRRIEEI---------------------TAEIEVGRVYTG 627 E D G VKI + ++A I I T+ +VG + G Sbjct: 597 ERDSGEVKIQGANKINVENAKSDILNIVKKSNDFKKGSKFGHHHERKETSNFQVGEEFDG 656 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRL 687 V +I+DFGAF+++ G +GL+H+S+I + L G + VKV E+ ++G+I L Sbjct: 657 VVKKIMDFGAFISLKDGIDGLLHVSKIKTQ--------LSEGDTLRVKVEEI-KRGKISL 707 Query: 688 SI 689 + Sbjct: 708 EL 709 >UniRef50_A7GX79 Polyribonucleotide nucleotidyltransferase n=17 Tax=Epsilonproteobacteria RepID=PNP_CAMC5 Length = 735 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 285/744 (38%), Positives = 412/744 (55%), Gaps = 74/744 (9%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 + + +A+QA AVM+ + +T V TV + + +DF PLTV Y E+ Sbjct: 3 YSIEVNNQVEIFDLNKVAKQAAGAVMLRVKNTVVLATV-ARDDVQVEEDFLPLTVQYIEK 61 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 YAAGRIPG + +RE +P + ETL AR+IDR +RPLFP+G+ Q++ V+S +P+V+ Sbjct: 62 AYAAGRIPGGYVKRETKPGDFETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPEVDL 121 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 +V + AS AL LS IP N P+ RVGYI+D++V+NP+ ELK S LDL VAGT+ + Sbjct: 122 QVVGLNAASVALYLSDIPVNRPVCGVRVGYIDDKFVINPSNSELKSSALDLYVAGTKDEL 181 Query: 187 LMVES--------------------------------EAQLLSEDQMLGAVVFGHEQQQV 214 LM+E + SED+++ A+ F + Sbjct: 182 LMIEMRSIAQQSSQIIPIIAIDPMMDPSLNDSITQKQDMNEFSEDRIVEAIDFAGKAILR 241 Query: 215 VIQNINELVKEAGKPR--WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDV 272 E KE K + +PE NE + + + + +A K ER +++ Sbjct: 242 ASNAYEEAFKEHKKEDAILELKPEIENENIAIYIDKFYKNDVKNAINQMAKSERASELGK 301 Query: 273 IKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTG 332 I + + +A+ E +E + +L +K +VR +++ R DGR D +R + + T Sbjct: 302 IAKQIASDEVAQKEGWEEGVISNVLGKYKKKIVREQIINEGVRADGRALDEVRPISIETN 361 Query: 333 VLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT--DTFLFHYNFPPYSVGET 390 VLP HGS LFTRG+TQALV ATLGT DAQ+ D L + + F+F+YNFP +SVGE Sbjct: 362 VLPNAHGSCLFTRGQTQALVVATLGTDGDAQMYDILTEKTALIEKFMFNYNFPGFSVGEA 421 Query: 391 GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 + +P RRE+GHG LAKR + + PYT+R+VSEI ESNGSSSMASVCG +LAL Sbjct: 422 SPLKAPGRRELGHGNLAKRALAPSIDINS--PYTIRLVSEILESNGSSSMASVCGGALAL 479 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 AGV + VAG+AMGL+ EGD + VL+DI+G EDH GDMDFKVAGS DGI+ALQMDIK Sbjct: 480 RAAGVDTQKLVAGVAMGLIFEGDKHAVLTDIMGLEDHDGDMDFKVAGSSDGITALQMDIK 539 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 + GI+ E+++ AL QAK R HIL +M QA + + + P++ ++P KI D+IG Sbjct: 540 LGGISLEVLKEALYQAKRGREHILNLMHQADSKIEVN-EDVLPKLELFSVDPSKIVDIIG 598 Query: 571 KGGSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAE----------- 618 + G I+ + E +I+++ + G VKIA + A I IT++ Sbjct: 599 QAGKTIKEIIERFEVSIDLDREKGEVKIAGGAKKNVDAAKDYIISITSKENSRGFGKKPH 658 Query: 619 -------------IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY 665 +G + G V +VDFGAF+ + G +GL+HIS+I Sbjct: 659 GHDRRDKDRQKPTFNIGDEFDGVVKSVVDFGAFIELKDGVDGLLHISKIKTP-------- 710 Query: 666 LQMGQEVPVKVLEVDRQGRIRLSI 689 L +G + V V E + +I LS+ Sbjct: 711 LNVGDRLKVCVSE-QKGNKISLSL 733 >UniRef50_A8Z660 Polyribonucleotide nucleotidyltransferase n=4 Tax=Flavobacteriales RepID=PNP_SULMW Length = 728 Score = 633 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 258/721 (35%), Positives = 416/721 (57%), Gaps = 37/721 (5%) Query: 1 MLNPIVRKFQY--GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58 M+ ++++ + +++ETG +AR+A + +V M +T++ TVV K++K F P Sbjct: 1 MIPELIKENLFLEDGRALSIETGELARKANGSAVVRMGNTSLLATVVISKESKEDFKFIP 60 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 LT++Y+E+ A G+IPG + +REGRP + E L RL+DR +RPLF + + NE+Q++ +++ Sbjct: 61 LTIDYREKYSAGGKIPGGYIKREGRPYDEEILTMRLVDRLLRPLFKDNYYNEIQIMISLL 120 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD-- 176 S + V PD +A + AS A+S+S I F GP+ R+ IND +++NP +E+K+S Sbjct: 121 SYDINVLPDGLAGLVASTAVSISEISFQGPVSTVRIIRINDAFIINPGIEEIKKSDFYLD 180 Query: 177 ------LVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK------ 224 L+V GT +++VE E + +SE +M+ A+V H+ Q+ I+ L+ Sbjct: 181 LDLDLDLIVGGTNNYIILVEGEMREISEIEMMEAIVKAHKYIQLQIEAQISLITKNKKFI 240 Query: 225 ---EAGKPRWDWQPEPVNEAL-----NARVAALAEARLSDAYRI-TDKQERYAQVDVIKS 275 +++ + +N L ++ ++ + Y+ KQ+R ++ I Sbjct: 241 KKKLYKIELYNYYYKYINFNLNVFYIKEKIKFISYEEIDYIYKSCLFKQKRSNKIYNILK 300 Query: 276 ETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLP 335 + E ++ E+ I I+K ++++ + R+DGR D IR + + LP Sbjct: 301 KIKFHFYNESIVINNLEIDIIFDEIKKEIIKNILFKENIRLDGRSLDDIRNICSQVDCLP 360 Query: 336 RTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGS 395 HGSA+FTRGETQAL T TLG++ D +D + F HYNFPP+S GE ++ Sbjct: 361 GVHGSAIFTRGETQALSTVTLGSSLDVNKIDNAIMRAKQRFYLHYNFPPFSTGEIKLLKG 420 Query: 396 PKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGV 455 RREIGHG LA+R + ++P YT+RVVS++ ESNGSSSMA+VC ++LALMD+G+ Sbjct: 421 VSRREIGHGNLAQRALKNIIPTT----YTIRVVSDVLESNGSSSMATVCASTLALMDSGI 476 Query: 456 PIKAAVAGIAMGLVKE--GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 +K V+GI+MGL+ ++LSD+LGDED++GDMDFK+ G+ G++A QMDIKI G Sbjct: 477 IVKRPVSGISMGLIMNYLTGEAIILSDLLGDEDYIGDMDFKITGTEYGMTACQMDIKISG 536 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 IT +++ + +AK L I+ M ++ PR ++ A +I+T I I VIG GG Sbjct: 537 ITYDVLSYTIFKAKKGLLFIIKKMLTTLSCPRKSLNITATKIYTFYIPKKLIGAVIGSGG 596 Query: 574 SVIRALTEETGTTIEIEDD---GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 630 I+ + T T I+I++ G ++I + K K AI +I+ IT +VG +Y KV Sbjct: 597 KRIQEIQVSTETNIKIKEKNYLGVIEILGKNETKLKIAILKIKNITFVPKVGTIYKAKVK 656 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSI 689 I FG FV I EGL+HI +I+ + KV +++ G + VK L + + +I+LS Sbjct: 657 NIKKFGVFVKISKYLEGLLHIYEISW--LTKVESFIRKGDIISVKYLGKNNKFRKIKLSH 714 Query: 690 K 690 K Sbjct: 715 K 715 >UniRef50_C1EGG8 Predicted protein n=2 Tax=Micromonas RepID=C1EGG8_9CHLO Length = 791 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 262/725 (36%), Positives = 395/725 (54%), Gaps = 31/725 (4%) Query: 3 NPIVRKFQYGQHTVT--LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 60 + + + V ETG +AR A++ SM D+ V V + P FFPL Sbjct: 36 ESVAVELGTERTPVRVGFETGRVARLTDGAIVASMGDSRVICAAVCSRDENPDAGFFPLQ 95 Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 120 V+Y+ER A G+IP +F RREG P + E L R++DR IRPLFP+ F + V A V++ Sbjct: 96 VDYRERHSAFGKIPPTFTRREGAPKDREVLAMRVVDRAIRPLFPKSFSRDTSVQAIVLAT 155 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLV 178 + +P ++A+ GASAALS+S IP+NGP+GA RV + D + +LNP+ +++ SKL L Sbjct: 156 DQSQDPAVLAVNGASAALSVSSIPWNGPVGAVRVSVLGDGNEIILNPSDKDVEASKLTLF 215 Query: 179 VAGTEAAVLMVESEAQL-----LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-D 232 AG E LM+E++A + E + A+ HE +V+I+ L + GK + Sbjct: 216 YAGNENRTLMIEAQAGTADEGGVPESVVASALRAAHEAAKVLIEPQRRLQRAIGKEKLDP 275 Query: 233 WQPEPVNEALNARVAALAEARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDE 290 Q P L V + +L Y+ I K R ++ +K E + ++ E + Sbjct: 276 VQQTPEQAKLRHDVFDRSSEKLRALYKEEIQCKHTRGKRMAELKDEIVNSMTEEGMSFTN 335 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 N++ + + V+R + + R+DGR +R L + VLP HGS++F RG TQA Sbjct: 336 NDVEQAFFWVSSRVMRDMIFEDKKRVDGRGIRELRQLGAESNVLPVVHGSSIFERGNTQA 395 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 L T T+G DAQ LD +G + HY+FP +S+ ET G RREIGHG LA++ Sbjct: 396 LATVTIGKLIDAQKLDAPVGPDNRRMMLHYSFPSFSINETPRRGGLSRREIGHGALAEKS 455 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 + ++P ++P+ VR+ +E ESNGSSSMA+VC SLALMDAGVPIK V I++GLV Sbjct: 456 LAGIIPAAKEWPFAVRINAETMESNGSSSMAAVCSGSLALMDAGVPIKEHVGAISVGLVM 515 Query: 471 EGDN-------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 + D Y +LSDI+G ED LGDMDFK+AG+R GI+ +Q+D K GI +I+ A+ Sbjct: 516 DEDEQTGKVTRYELLSDIMGLEDVLGDMDFKIAGTRGGITGIQLDCKPAGIPLDILIEAM 575 Query: 524 NQAKGARLHILGVMEQAINAPRG-DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 582 + A AR ++ M++AI+ PR D SE + T++++ I +IG G IR L Sbjct: 576 DVASIARSAVIDEMDRAISKPRSRDDSEDGAQFTTVRMDRSLIGRLIGPKGDTIRELERT 635 Query: 583 TGTTIEI--------EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 TG + I +D T+ I A A+ +I+ I + G V KV + Sbjct: 636 TGAKVSIHEEDDAGVDDQCTLGIFAGTRPGLDAALEKIQLIAWVPKEGDVVKAKVVNQLA 695 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKV--TDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 692 +G F+ + ++GL+H S+ R + Q+G+EV VK+ +V GR+ LS+K Sbjct: 696 YGWFLRLPNEQDGLLHASEYLHTRKVDPMKDNIFQIGEEVLVKIKDV-SDGRVGLSVKAL 754 Query: 693 TEQSQ 697 + + Sbjct: 755 SPAPE 759 >UniRef50_B9XS52 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=bacterium Ellin514 RepID=B9XS52_9BACT Length = 664 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 274/604 (45%), Positives = 384/604 (63%), Gaps = 10/604 (1%) Query: 101 PLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ 160 PLFP+G+ NEVQV V+S + + +PDI+++IGASA+L +S IP+ GP+GA R+ +N + Sbjct: 1 PLFPKGWYNEVQVQTVVLSADGENDPDILSIIGASASLMVSDIPWAGPLGALRIARVNGK 60 Query: 161 YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 ++ PT E+ ES LDL+ G E ++M E + +SE+ A+ FG + + +I Sbjct: 61 FIAIPTHAEMAESDLDLIYVGNENDIVMFEGAGEEISEEDFKAALKFGQDCCKPLIAAQK 120 Query: 221 ELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIAT 280 EL +AGK + + + V E + ALA R+ A K R A V+ I E Sbjct: 121 ELAAKAGKKKREVKLNIVPEEILKEAKALAGDRIVPALLTPSKLAREAAVNAIFEEVGKK 180 Query: 281 LLAED--ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTH 338 L+ + E + E L + + I+K VR ++ R+DGR D IR + G+LPR H Sbjct: 181 LVEKFGAEKVTEFVLKDASYYIQKEAVRGLIMKEGKRMDGRPLDGIRAIHSEAGILPRAH 240 Query: 339 GSALFTRGETQALVTATLGTARDAQVLDE-LMGERTDTFLFHYNFPPYSVGETGMVGSPK 397 GSALF+RGETQ + ATLGT DAQ D G F+ HYNFP YSVGETG + P Sbjct: 241 GSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHYNFPNYSVGETGRISGPG 300 Query: 398 RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI 457 RREIGHG LA+R + ++P +DK+PY +RV SEI ESNGS+SMASVCG +LALMDAGVP+ Sbjct: 301 RREIGHGALAERSIEPMIP-LDKYPYAIRVTSEIMESNGSTSMASVCGGTLALMDAGVPM 359 Query: 458 KAAVAGIAMGLVKEGD------NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI 511 VAGI++G+ E D Y +LSDI+G ED GDMD K+AG+ GI+ Q+D+K+ Sbjct: 360 IRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGFGDMDCKIAGTEKGITGFQLDLKL 419 Query: 512 EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK 571 GI ++M L +A+ ARL ILG M + + APR ++S++APRI T++INP+KI +IG Sbjct: 420 RGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEMSKYAPRIETVRINPEKIGALIGP 479 Query: 572 GGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 631 GG I+ L EE+G I IEDDGTV I + E K A I +TAE E+G++Y GKV Sbjct: 480 GGKNIKRLVEESGCEINIEDDGTVNIYSVSSEGMKIARDAIVGMTAEAEIGKIYRGKVVT 539 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKE 691 + +FGAFV GK+GLVHIS++A+ RV++ D +++G E+ VK L VD +GR++LS + Sbjct: 540 VKEFGAFVEFLPGKDGLVHISELANFRVKQTEDIVKIGDEIWVKCLGVDEKGRVKLSRRA 599 Query: 692 ATEQ 695 A + Sbjct: 600 AMAE 603 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 94/263 (35%), Gaps = 30/263 (11%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDT--AVFVTVVGQKKAKPGQDFF------PLTVNY 63 G + E G++ R A + + S +T T+ + A+ + ++Y Sbjct: 225 GIRAIHSEAGILPR-AHGSALFSRGETQTVALATLGTGEDAQEFDSYTGGSNEKKFILHY 283 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFV-NEVQVIATVVSVNP 122 Y+ G R P E L +R I P+ P ++V + ++ N Sbjct: 284 NFPNYSVGET-----GRISGPGRREIGHGALAERSIEPMIPLDKYPYAIRVTSEIMESNG 338 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGY------IND----QYVLNPTQDELKE 172 + + ++ G + AL +G+P P+ +G ++ + + + E Sbjct: 339 STS--MASVCGGTLALMDAGVPMIRPVAGISIGMCTEHDAVDKISAYKLLSDIIGAEDGF 396 Query: 173 SKLDLVVAGTEAAVL--MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 +D +AGTE + ++ + + + D M + + ++ + + + Sbjct: 397 GDMDCKIAGTEKGITGFQLDLKLRGIPHDMMAETLEKARVARLFILGEMAKTLAAPRTEM 456 Query: 231 WDWQPEPVNEALN-ARVAALAEA 252 + P +N ++ AL Sbjct: 457 SKYAPRIETVRINPEKIGALIGP 479 >UniRef50_B0WG77 Polyribonucleotide nucleotidyltransferase 1, mitochondrial n=2 Tax=Diptera RepID=B0WG77_CULQU Length = 759 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 256/674 (37%), Positives = 398/674 (59%), Gaps = 26/674 (3%) Query: 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQD--FFPLTVNYQERTYAA 70 V + +G AR A +V++ DTAV VT V ++K G + F PL V+Y+++ AA Sbjct: 51 GRVVRISSGKYARFADGCSVVTVGDTAVMVTAVARQKPAGGSNASFLPLVVDYRQKAAAA 110 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 GRIP +F RRE PSE E L ARL+DR +RPLFP F + Q++ +++++ PD+ A Sbjct: 111 GRIPTNFLRREMGPSEKEILAARLVDRSMRPLFPAEFRCDTQLVCNMLAIDSSNLPDVQA 170 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMV 189 + ASAALSLS IP+NGP+GA RVG ++++ ++NPT+ EL+ S LDLVV+ T+ V+M+ Sbjct: 171 INAASAALSLSDIPWNGPVGAVRVGLVDNEIIINPTRKELQLSALDLVVSATKQNLVVML 230 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP-EPVNEALNARVAA 248 E +++E+++ A+ G ++ Q++I I +L K GKP+ +P +E + A V Sbjct: 231 EGRGNIVNENELRMAIKKGTQEAQLIINGIEKLQKSHGKPKRALEPLPQADEEIEAAVRT 290 Query: 249 LAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVR 306 ++E RL + +R DK R V +++TI + + ++D +GE + K+V R Sbjct: 291 MSEMRLREIFRDFSHDKFSRDQAVSKTRTDTIDKVWSSYPSVDPALIGECFNKFTKSVFR 350 Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V R DGR D +R + + HGSALF RG+TQ T L + A LD Sbjct: 351 EMVFEENRRCDGRYLDDLRKISSSVNMHKPLHGSALFQRGQTQVFATVALDSQESALKLD 410 Query: 367 ELM----GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 + G ++ F HY FPPY+ GETG +G RREIGHG LA++G+L ++P+ + P Sbjct: 411 PITSLDMGVKSKNFFLHYEFPPYATGETGKIGPVGRREIGHGALAEKGLLPIIPNDN--P 468 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-------- 474 +T+R+ +E+ ESNGSSSMA+VC S+ALMDAG+P++ A AG+A+GL+ + +N Sbjct: 469 FTIRLTAEVLESNGSSSMATVCAGSMALMDAGIPVQEAAAGVAIGLMTKYENNDTKHLQD 528 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 Y +L+D+LG ED+LGDMD KVAG+R G++A+Q DIK+ GI +++ +L +A AR IL Sbjct: 529 YRILTDLLGIEDYLGDMDMKVAGTRRGMTAIQADIKVPGIPLKVVMESLQKAMEARFKIL 588 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 594 +M ++I+ R + P ++I P + ++G GG IR L ETG + ED+ Sbjct: 589 DLMNESISTVRTLKKDCWPVTDKLQIEPHQRSKLLGPGGINIRRLYLETGVQLSQEDENQ 648 Query: 595 VKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GL 648 +I A A +E + ++E G +YT K+ + D G V + L Sbjct: 649 FRIFAPSEAAMHEAKEYLETLMKTEKVPDLEFGAIYTAKIVEMKDTGVMVTLYPSMSPAL 708 Query: 649 VHISQIADKRVEKV 662 +H SQ+ ++V ++ Sbjct: 709 LHNSQLDQRKVSEI 722 >UniRef50_Q30TH2 Polyribonucleotide nucleotidyltransferase n=19 Tax=Epsilonproteobacteria RepID=PNP_SULDN Length = 721 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 276/725 (38%), Positives = 403/725 (55%), Gaps = 51/725 (7%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 K G +A+QA A + +T + TVV + DF PLTV Y E+ Sbjct: 5 IKIDLKNKNEEYSFGEVAKQANGAAWLKSGNTVILATVVIDETEIVKDDFLPLTVQYIEK 64 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 YAAG+IPG FF+RE + S+ ETL +R++DR +RPLFP+GF + Q+ V SV+ + + Sbjct: 65 AYAAGKIPGGFFKRETKASDFETLTSRIVDRSLRPLFPKGFGHPTQITIMVFSVDKESDL 124 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 ++A+ ASAAL +S I N + A RV I+ + +LNPT EL +S LDL ++GT+ + Sbjct: 125 QVLALNAASAALYVSDIDINKSVSAIRVAKIDGELILNPTLSELDKSTLDLYLSGTKEDL 184 Query: 187 LMVESE------------------------------AQLLSEDQMLGAVVFGHEQQQVVI 216 LM+E + + ED+++ + E Sbjct: 185 LMIEMRSKGGIKVDTNLMIDPLMDPTLSSAIIATHVSNAVPEDELITILAKAEELLFETN 244 Query: 217 QNINELVKEAGKP--RWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIK 274 E+ KE K + + +NE + V + + + A K ER + ++ Sbjct: 245 AMYEEMFKEFKKETSPLECKAHALNEEMLKYVRSNHYSDIKSAMNQMAKSERSTALRQLR 304 Query: 275 SETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL 334 + I T E DE EL +++ +++K VR ++L R DGR + IR + + T VL Sbjct: 305 KKIIIT----KEEWDEVELKDVIESVKKEQVRGQILNDRVRADGRALNEIRPISISTNVL 360 Query: 335 PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT--DTFLFHYNFPPYSVGETGM 392 P H S LFTRG+TQALV T+G +DAQ+ + L E T + F+ HYNFP +SVGE Sbjct: 361 PSAHASCLFTRGQTQALVVLTMGGPKDAQMFENLTDEGTQNENFMVHYNFPGFSVGEASP 420 Query: 393 VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMD 452 + KRRE+GHG LAKR + ++ TVR+VSEI ESNGSSSMA+VCG +AL Sbjct: 421 IMGTKRRELGHGNLAKRALEPIVNLEG---QTVRLVSEILESNGSSSMATVCGGYMALRA 477 Query: 453 AGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIE 512 A + +AGIAMG+V EGD Y +LSDI+G EDH GD+DFKV GS+DGI+A+QMDIK+ Sbjct: 478 ADIETSDTIAGIAMGMVSEGDKYAILSDIMGLEDHDGDLDFKVTGSKDGITAMQMDIKLG 537 Query: 513 GITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKG 572 GI+ I++ AL QAK R HI+ +M++A + INP I D+IG+ Sbjct: 538 GISLNILKEALYQAKEGRAHIINIMQEAEKNISFNDGVLPS-TDFFHINPSFIGDIIGQA 596 Query: 573 GSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAEI-------EVGRV 624 G IR + E+ I+I+ DG VK+ + A IE I + +VG + Sbjct: 597 GKTIREIIEKFEVAIDIDKKDGKVKVTGKSKSGVQAAREHIEGIVSTPKMPKIEYKVGDI 656 Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 684 + G V +IV+FGAF+ + G +GL+HIS+I+D+RVEKV+D L+ G+E+ V++LE + + Sbjct: 657 HKGIVKKIVEFGAFIELPDGVDGLLHISKISDQRVEKVSDILKEGEEINVEILEF-KGNK 715 Query: 685 IRLSI 689 I L I Sbjct: 716 ISLGI 720 >UniRef50_Q2GEY8 Polyribonucleotide nucleotidyltransferase n=2 Tax=Neorickettsia RepID=PNP_NEOSM Length = 757 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 302/707 (42%), Positives = 427/707 (60%), Gaps = 24/707 (3%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA-----KPGQD 55 M ++ ++ ++TG +ARQA A VS T V V QK Sbjct: 1 MFEIKESSMEWEGKSLHIKTGEVARQAAGAACVSYGGTVVLAVVTLQKDTAASKKTSDLS 60 Query: 56 FFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA 115 L N+ ++YA GRIP FF+REG+ SE E L +R++DR +RPL E VNEV ++ Sbjct: 61 GLALVTNFLAKSYALGRIPNGFFKREGKLSEREVLASRVVDRAVRPLIEENLVNEVNIVC 120 Query: 116 TVVSV-NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 174 +++ N +V P+I A+I ASAAL LSGIPF+GP+ V + T +E++E++ Sbjct: 121 KLLAHGNRKVLPEIPALIAASAALQLSGIPFSGPVIGVDVDMRGSEV----TCNEIRETE 176 Query: 175 --LDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWD 232 L+L VA TE +V+MVE+EA SE++++ A+ + + V INE VK + Sbjct: 177 GGLELFVACTEESVVMVEAEASEASEEEVVNALSEALKSAKPVFSFINEFVKSVTTVK-P 235 Query: 233 WQPEPVNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETLDE 290 N+ L +V A +L Y RI+ K++R+ ++ I ++T A L + E Sbjct: 236 IGVLYDNKELCEKVRAACSGQLESVYNERISSKEKRHNKLGQIYTDTFAQLSDDGYA--E 293 Query: 291 NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA 350 +E+ + +EK +VR VL R DGR IR + + LP THGSALFTRG TQ+ Sbjct: 294 SEVLFFIKKLEKEIVRKNVLEEGIRPDGRSLTEIRPISIALDYLPGTHGSALFTRGGTQS 353 Query: 351 LVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 LV ATLG+ +D QV+D++ GER ++ L HYNF PY+VGE G + +P RREIGHGRLA + Sbjct: 354 LVVATLGSYQDEQVMDDIDGERRESVLLHYNFLPYAVGEVGALRAPGRREIGHGRLALKA 413 Query: 411 VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 V AV+P + FPYT+R+VSEITES+GSSSMA+VCG+SLALMD GVPI VAGIAMGL+ Sbjct: 414 VKAVLPGKEVFPYTLRLVSEITESDGSSSMATVCGSSLALMDTGVPITKHVAGIAMGLIT 473 Query: 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 +G VLSDI GDED LGDMDFKVAG+R+GI ALQMD+K+ GI+ ++ ALNQA R Sbjct: 474 DGVRSAVLSDISGDEDMLGDMDFKVAGTRNGIVALQMDMKVRGISIATIRDALNQALAGR 533 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 LHIL ME I PR + + AP+I KI+ D + VIG GG IR ++ +T I+I+ Sbjct: 534 LHILEKMEHVIAKPRESLKDSAPKILCYKIDKDVVHKVIGSGGKTIRGISSDTSAKIDID 593 Query: 591 DDGTVKIAATDGEKAKHAIRRI-------EEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 + V I A E A R+ + ++++G +Y GK+ +VDFG FV + Sbjct: 594 QNNYVYIMADTEEALMEAKTRVDMASGASDSNVPQLKIGELYDGKIVSVVDFGLFVVLPN 653 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIK 690 +EGLVHIS+I+ RV + GQ V V++ ++ G+I+L+++ Sbjct: 654 KQEGLVHISEISKNRVNDIRADYTEGQAVTVRIKDIGSDGKIKLTMR 700 >UniRef50_A8PS54 3' exoribonuclease family, domain 2 containing protein n=1 Tax=Brugia malayi RepID=A8PS54_BRUMA Length = 752 Score = 608 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 234/706 (33%), Positives = 372/706 (52%), Gaps = 28/706 (3%) Query: 11 YGQH-TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-DFFPLTVNYQERTY 68 G+ + ETG +AR A AV+VS +T+V TVVG+ + DF PLTV++Q+ Sbjct: 39 VGERDVIRFETGHIARLADGAVVVSQGETSVLATVVGRHSSASDTADFMPLTVDFQQSAS 98 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDI 128 A GRIP ++ RRE + ++ + L +R+IDR IRPLFP+ + E Q+I ++V+ +P + Sbjct: 99 AVGRIPMNYLRRELQRNDADILASRMIDRSIRPLFPKDYSGETQIICKPLAVDDDGDPVM 158 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA--V 186 + + ASAAL+LS IP+ GP+GA RV IN++ V+NP++ +K S +DLV+AG + + Sbjct: 159 LGLNAASAALTLSDIPWEGPLGAVRVALINNEVVVNPSRKNMKSSSVDLVIAGCDNGKRI 218 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARV 246 LM++ + + + + G + +IQ IN++ G+P+ E ++ L A Sbjct: 219 LMIDMDGCEIEMENFSECIRIGLQAISHLIQAINKVKDSCGRPKRQNGNEEIDIDLIALT 278 Query: 247 AALA---EARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIE 301 + +L DK R V + + ++L + Sbjct: 279 EEMHVLCGDQLYQILTNAKHDKLSRDQAVSELGDRLLEKFKER---SSPHKLRHTFRNLL 335 Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K +R + E R DGR+ + +R +++R V HGSALF RG+TQ T T Sbjct: 336 KRSLREALFKSEKRCDGRKFNELRPVNIRMDVHKNLHGSALFQRGQTQVFSTVTFDAPSA 395 Query: 362 AQVLDE----LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 A D L ++ F+ HY FP ++ RRE+GHG LA++ + ++P Sbjct: 396 AFQPDALSQLLGAQQKKMFMLHYQFPSFATTAISSSARTSRRELGHGALAEKALKRLIP- 454 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV--KEGDNY 475 D FPY +R+ ++ ESNGSSSMASVC LAL+DAGV IKA AGIAMGL+ +E ++Y Sbjct: 455 -DDFPYCLRLACDVLESNGSSSMASVCAGCLALLDAGVQIKAPAAGIAMGLIINEERNDY 513 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 +L+DI G ED GDMDFK+AG+ G +A+Q+D+K+ GIT +++ +L QA+ H+L Sbjct: 514 RILTDINGLEDFAGDMDFKIAGTVRGYTAMQLDLKVPGITPKLVTESLKQARNGLEHLLQ 573 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 +M++A R P TI + K + GG + + ETG I IEDD + Sbjct: 574 LMKKAQPVSRDQFKTTVPVHETIPVEIYKRHIIFRSGGYNAKLIESETGAKISIEDDTNI 633 Query: 596 KIAATDGEKAKHAIRRIEEITAE-----IEVGRVYTGKVTRIVDFGAFVAIGGGKE-GLV 649 I A + K + A + ++ + G +Y ++T ++D G V + G + L+ Sbjct: 634 SIFAPNKVKLEEAKVMLNKMFENENEIDLVFGAMYKAEITDLLDHGVLVTLHKGMKPILL 693 Query: 650 HISQIADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 S + + V ++GQ++ ++ L D G R+S K Sbjct: 694 KNSNLDVRNVAHAKVLGFKVGQKIIIQYLGRDPYTGYHRISRKTLQ 739 >UniRef50_C7LKG2 Putative polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKG2_SULMS Length = 691 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 247/699 (35%), Positives = 408/699 (58%), Gaps = 24/699 (3%) Query: 1 MLNPIVRKFQY--GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP 58 M+ + ++ + +++ETG +A QA +V M T++ T+V KK K G +F P Sbjct: 1 MIPELRKENIFLEDGQIISIETGKLACQANGTAVVRMGKTSLIATIVISKKEKEGINFLP 60 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVV 118 L ++Y+E A G+IPG F +RE RPS+ E L RLIDR +RPLFP+ F+ E+Q+I ++ Sbjct: 61 LIIDYKENYSAGGKIPGGFIKRERRPSDEEVLTMRLIDRLLRPLFPQNFLKEIQIIIYLL 120 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 S + V PD +A + ASAA+S+SGIPF GP+ A R+ + +++NP +K+S ++L+ Sbjct: 121 SYDRNVLPDGLAGLVASAAVSISGIPFKGPVSAVRIIRFKNSFLINPGIKSVKKSDINLI 180 Query: 179 VAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPV 238 + GT+ ++LM+E E + +SE++++ + H ++ I L+K K + + P Sbjct: 181 IGGTKNSILMIEGEMKEISENEIIYFIKIAHFFIKLQITAQINLIKNL-KIKRNNLPVFN 239 Query: 239 NEA---LNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGE 295 N L ++ + ++ Y+ R+ Q++++ + L ++ L+E+E Sbjct: 240 NLNFIYLKNKIKYIFYEKIYCLYKQASSIIRFQQMEILLLKINNYFLYDNIILNEDEQNY 299 Query: 296 ILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTAT 355 I ++K ++R +L R+DGR D +R + +T LP HGSA+F+RGETQAL T T Sbjct: 300 IFEILKKEILREIILKENHRLDGRSLDDLRKIWSQTNFLPSVHGSAIFSRGETQALSTVT 359 Query: 356 LGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVM 415 LG++ D +D ++ + F HYNFPP+S GE ++ RREIGHG LA+R + ++ Sbjct: 360 LGSSLDVNKIDNVILQDQQKFYLHYNFPPFSTGEIKLLKGISRREIGHGNLAQRALKNII 419 Query: 416 PDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE--GD 473 P PYT+RVVS+I ESNGSSSMA+VC ++LALMDAG+PIK V+GI+MGL+ D Sbjct: 420 PFKT--PYTIRVVSDILESNGSSSMATVCASTLALMDAGIPIKRPVSGISMGLIINFLTD 477 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 ++LSDILGDED++GDMDFK+ G++ GI+A QMDI G E++ ++ +AK L + Sbjct: 478 EAIILSDILGDEDNIGDMDFKMTGTKFGITACQMDINFPGSNYEMLLNSIFKAKNCLLFL 537 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD- 592 + + I PR E +P+I +I I VIG GG +I+ + T T ++IE++ Sbjct: 538 IKKILNTIQYPRFSFKENSPKIFYFEIKKKLIGTVIGSGGKIIQEIKTSTNTNLKIEEEE 597 Query: 593 --GTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 G ++I ++ K+AI +I+ + + ++Y K+ I + + + G+ Sbjct: 598 NLGIIEIYGKTDKQIKNAILKIKNLIFFPKKEKLYKVKIKSIKNSELIIILPSGQT---- 653 Query: 651 ISQIADKRVEKVT--DYLQMGQEVPVKVLEVDRQGRIRL 687 + K+ E + +L+ G +K+ V++ G+I Sbjct: 654 ---MDLKKSENLNLYSFLRKGD--WIKIKSVNQNGKINF 687 >UniRef50_A4RT74 Predicted protein n=2 Tax=Ostreococcus RepID=A4RT74_OSTLU Length = 679 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 265/663 (39%), Positives = 381/663 (57%), Gaps = 21/663 (3%) Query: 60 TVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVS 119 V+Y+ER+YA G+IP +F RREG P E E L R+IDR RPLF + F EV + V++ Sbjct: 1 MVDYRERSYAKGKIPSTFTRREGAPKEREILAMRVIDRATRPLFEKNFAKEVMLQCVVMA 60 Query: 120 VNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 + +P ++A+ GASAAL+ S IP+NGPIGA RV +N +++P+ + ++ S L Sbjct: 61 SDGVEDPAVLAVNGASAALTASSIPWNGPIGAVRVAVVNKAIIVSPSDEVVESSDFTLFY 120 Query: 180 AGTEAAVLMVESEAQL---LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE 236 AG EA LM+E+++ L E + A+ HE + +I L E GKP+ + Sbjct: 121 AGNEARALMIEAQSNKSGGLEETLVADALRKAHEAVRELIPPQIALANEIGKPKQELAAA 180 Query: 237 PVNEALNARVAALAEARLSDAY--RITDKQERYAQVDVIKSETIATLLAEDETL------ 288 PV + +A+ARL Y I DK ER ++ ++SE + L+ Sbjct: 181 PVTAEMKRACYDVAKARLVALYEEHIQDKHERGRKMAELQSEVVRELMDSHPEWMESGEV 240 Query: 289 DENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGET 348 E LG A+ V+R RVL R+DGR +R LD TG +P HGSALF RG T Sbjct: 241 SEAMLGSAYFAVCGRVLRERVLDEGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNT 300 Query: 349 QALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAK 408 QAL T TLG+ D+Q LD L G + + HY+FP +SV ETG G RRE+GHG LA+ Sbjct: 301 QALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGARG-LSRREVGHGALAE 359 Query: 409 RGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 + +L V PD D FP+ VRV +E ESNGSSSMA+VC S+ALMDAGVP+ V I++GL Sbjct: 360 KSLLGVFPDEDAFPFAVRVNTETLESNGSSSMAAVCSGSMALMDAGVPLTEHVGAISIGL 419 Query: 469 VKEGDN-------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQV 521 V + D Y ++ DI+G ED LGDMDFK+AG+R G++ +Q+D K GI +I+ Sbjct: 420 VMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVTGIQLDCKPAGIPLDILIE 479 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTE 581 AL++A AR ++ VME+A++ P+ + + APR + P I +IG GS I+AL + Sbjct: 480 ALDRASAARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEK 539 Query: 582 ETGTTIE-IEDDGTVKIAATDGEKAKHAIRRIEEITAEI-EVGRVYTGKVTRIVDFGAFV 639 ETG + + DDG + + + AI IE + I EVG+ Y V ++ FG + Sbjct: 540 ETGAKVSVVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVL 599 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPA 699 G +GL+H+S+IA + E V+D +G +V VK ++ D +G I+ S K + +P Sbjct: 600 TTASGDDGLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLPRPRPP 659 Query: 700 AAP 702 Sbjct: 660 GRE 662 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 30/220 (13%) Query: 28 TAAVMVSMDDTAVFVTVV-GQKKAKPGQDFF------PLTVNYQERTYAAGRIPGSFFRR 80 + + +T TV G + D L ++Y +++ Sbjct: 290 HGSALFERGNTQALATVTLGSLEDSQRLDNLTGPTSKRLMLHYSFPSFSVNETGA----- 344 Query: 81 EGRPSEGETLIARLIDRPIRPLFPEG--FVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 138 S E L ++ + +FP+ F V+V + N + + A+ S AL Sbjct: 345 -RGLSRREVGHGALAEKSLLGVFPDEDAFPFAVRVNTETLESNGSSS--MAAVCSGSMAL 401 Query: 139 SLSGIPFNGPIGAARVGYINDQ---------YVLNPTQDELKE--SKLDLVVAGTEAAVL 187 +G+P +GA +G + D+ Y L L++ +D +AGT + V Sbjct: 402 MDAGVPLTEHVGAISIGLVMDEDEETGEVKRYALMDDIMGLEDVLGDMDFKIAGTRSGVT 461 Query: 188 MVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 ++ + + + D ++ A+ +Q VI + V E Sbjct: 462 GIQLDCKPAGIPLDILIEALDRASAARQKVIDVMERAVSE 501 >UniRef50_D1B019 Polyribonucleotide nucleotidyltransferase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B019_SULD5 Length = 746 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 281/749 (37%), Positives = 417/749 (55%), Gaps = 69/749 (9%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + K + G +A+QA A ++ + +T + TV + + ++F PLTV Y Sbjct: 1 MEYKIYVNNQEEIYDIGKVAKQAAGAALLKIKNTVILATV-ARDDTQVSENFVPLTVQYV 59 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 E++YA G+IPG + +RE +P + ETL +R+IDR +RPLFP+G+ Q+ V+S + +V Sbjct: 60 EKSYAVGKIPGGYIKRETKPGDFETLTSRIIDRSLRPLFPKGYAYPTQITVFVLSCDAEV 119 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 + + A+ A AAL LS IP N + R+GY++ YV+NP+ LK+S LDL VAGT+ Sbjct: 120 DLQVAALNAAGAALYLSDIPVNKAVAGVRIGYVDGAYVVNPSNSLLKKSTLDLYVAGTKE 179 Query: 185 AVLMVESEA--------------------------------QLLSEDQMLGAVVFGHEQQ 212 +LM+E + ED +L A+ Sbjct: 180 ELLMIEMRSIASMESVSLPVMAIDPMLDPTLAENMMAKQVINEFPEDAILAAIDTAQNAI 239 Query: 213 QVVIQNINELVKEAGKPR--WDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQV 270 K D++ + ++A+ A + + + DA K ER +++ Sbjct: 240 TEATTAYENTFVSLKKEDAILDYKQDLTSDAIFAYIDEFYKEAVYDAINQMAKSERASEL 299 Query: 271 DVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVR 330 I + +A E D+ + +L +K +VR ++ R DGR+ IR + + Sbjct: 300 SKIVDAILKDNIATLEGWDKALVDSVLQTYKKKIVREMIVEKRVRADGRKLTEIRPISIE 359 Query: 331 TGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVG 388 T +LP HGS LFTRG+TQALV ATLG +DAQ+ D L + +DTF+ +YNFP +SVG Sbjct: 360 TNLLPLAHGSCLFTRGQTQALVIATLGNDKDAQMYDLLTEKSSVSDTFMVNYNFPGFSVG 419 Query: 389 ETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASL 448 E + +P RRE+GHG LA+R + V+ T+R+VSEI ESNGSSSMA++CG +L Sbjct: 420 EASPLRAPGRRELGHGNLARRALEPVVDINRL--QTIRLVSEILESNGSSSMATICGGAL 477 Query: 449 ALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 AL AGV I+ VAGIAMGLV EGD + VLSDI+G EDH GDMDFKVAG++DGI+ALQMD Sbjct: 478 ALKAAGVEIEKLVAGIAMGLVFEGDKHAVLSDIMGLEDHDGDMDFKVAGTKDGITALQMD 537 Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 IK+ GI++++++ AL QA+ R HIL +ME+A + + P++ ++P KI D+ Sbjct: 538 IKLGGISRDVLKEALYQAREGREHILAIMEKASEEIVIN-NAVLPKLELFNVDPSKIVDI 596 Query: 569 IGKGGSVIRALTEETGTTIEIE-DDGTVKIAATDGEKAKHAIRRIEEITAE--------- 618 IG+ G IR + E+ +I+++ + G VKIA + EK A I +IT + Sbjct: 597 IGQAGKTIREIIEKFEVSIDLDREKGEVKIAGENKEKVDAAKEHIIQITNKASFGGRGGH 656 Query: 619 ------------------IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 V G V RIVDFGAFV + GG +GL+H+S+IAD RV+ Sbjct: 657 GRDRDNKYPTKESKPVPTFIQDEVVDGTVKRIVDFGAFVELPGGIDGLLHVSKIADHRVD 716 Query: 661 KVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 KV+DYL + Q+V VK+L+ +I L + Sbjct: 717 KVSDYLALEQKVRVKILK-QAGNKIELEL 744 >UniRef50_D0MYG3 Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG3_PHYIN Length = 893 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 256/768 (33%), Positives = 389/768 (50%), Gaps = 84/768 (10%) Query: 3 NPIVRKFQYGQ-HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK--------AKPG 53 ++ G + + G +A+ A AV+ S T + TVV Sbjct: 69 PKKEKELVVGSLDATSYKVGKLAKLADGAVLASCGRTVLLTTVVSGDHHGNPSVNGGSTQ 128 Query: 54 QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQV 113 +DF PLTV+++ +++A G IP + RRE S+ E L +R++DR IRPLFP + QV Sbjct: 129 RDFLPLTVDFRVKSHAVGLIPDNQKRREFTGSDEEVLQSRVVDRAIRPLFPRDYCENTQV 188 Query: 114 IATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKES 173 +ATV S +P +P +VA+ ASA LS+S IP++GP+G RV ++ Q V+NPT + + + Sbjct: 189 LATVQSYDPNNDPLVVAVNSASAVLSMSDIPWDGPVGCVRVVEVDGQLVVNPTAPQREAA 248 Query: 174 KLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDW 233 +D++ AGT +MVE+ ++E ++ A+ H I+ +L E GK + ++ Sbjct: 249 TMDVLYAGTAEHAIMVEASGDEVTEARLDEALDLAHTNAVSAIEEQKKLAAEHGKTKREY 308 Query: 234 QPEPVNEALNARVAALAEARLSDAYRI--TDKQERYAQVDVIKSETI----ATLLAEDET 287 P + + A+ L A +K R + ++ + + Sbjct: 309 SPLFIAPEVWAKAEELGRADAEALIASGRVNKLARQEGEREVYNKMLTGMRQHFATANPP 368 Query: 288 LDENELGEILHAIEKNVVRSRVL--------AGEPRIDGREKDMIRGLDVRTGVLPRTHG 339 +D+ + H + V+R R+L R+DGR ++R L+++ VLP HG Sbjct: 369 VDDAAIQRAAHDTFQRVLRERILTIAKETKKNKPVRLDGRPVRIVRPLEMKAAVLPMAHG 428 Query: 340 SALFTRGETQALVTATLGTARDAQVLDELMGERT-----------DTFLFHYNFPPYSVG 388 S+LF RGETQ L + TLG L + E + HY FPP+ V Sbjct: 429 SSLFARGETQTLCSVTLGPLERGIRLRGALHEAREQAERDAPAPFKHAMLHYEFPPFCVN 488 Query: 389 ETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASL 448 ETG VG RR IGHG LA++ VL ++P + +FPYTVR+ SE+ S+GSSSMA+VCG SL Sbjct: 489 ETGRVGGTNRRMIGHGALAEKAVLPILPSITEFPYTVRMTSEVVGSDGSSSMATVCGVSL 548 Query: 449 ALMDAGVPIKAAVAGIAMGLVKEGD------------NYVVLSDILGDEDHLGDMDFKVA 496 ALMDAGVP++ AVAGIA+GLV GD NY +++DILG EDH GDMDFKVA Sbjct: 549 ALMDAGVPVRRAVAGIAIGLVTAGDPFACQEKRIEEGNYQLVTDILGSEDHYGDMDFKVA 608 Query: 497 GSRDGISALQMDIKI-EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRI 555 G+ G++ALQ+D+K+ G+ +++ L +AK ARLHIL M ++ PR + + Sbjct: 609 GTTSGVTALQLDVKLPGGVPLFVLKEGLREAKHARLHILRRMSNELSEPRTTLKSSGSAL 668 Query: 556 HTIKIN----PDKIKDVIGKGGSVIRALTEETGTTIEIEDD----GTVKIAATDGEKAKH 607 + I + I +IG GGS IR L ++ I D V AA D EKA+ Sbjct: 669 PNVSIECVIATNLIGALIGVGGSNIRDLESRFNVSVSIVDRREGIVRVVGAAGDAEKARD 728 Query: 608 AIRR-----------------------------IEEITAEIEVGRVYTGKVTRIVDFGAF 638 I+ ++ T G YT V +++DFGA Sbjct: 729 WIQTELAGFASSGPRGSNGNDSNSSRDNDSQGSNKDRTFFFRKGERYTMHVKQVMDFGAI 788 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIR 686 + G+ G VHIS+++ +V + D + GQE+ + L+ G++ Sbjct: 789 LEASSGQRGFVHISELSRDKVSNIHDVVSEGQEMEFECLQDGASGKMS 836 >UniRef50_Q7VIL0 Polyribonucleotide nucleotidyltransferase n=2 Tax=Helicobacter RepID=PNP_HELHP Length = 709 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 251/713 (35%), Positives = 398/713 (55%), Gaps = 39/713 (5%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 K ++ + +A+ A ++ + + +V Q+ K +F PL+V Y E+ Sbjct: 4 IKLEFENLSEQYSFNYVAQAANGGILYQNGGSVLLASVCTQENEKYDDEFLPLSVQYIEK 63 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 TYA + P F +REG+PSE E L +RLIDR +RPLFP+G+ ++ V+S + + + Sbjct: 64 TYANNKFPSGFIKREGKPSEFEILTSRLIDRTLRPLFPKGYTYITSIVVMVLSYDGKSDL 123 Query: 127 DIVAMIGASAALSLSGIPF----NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGT 182 + A+ A+ AL +S +P + + R+G + +++NPT ++L ES+L+L V+G Sbjct: 124 QLNALNAAACALYVSDLPLESLQDKAVSGVRIGRKDGHFIINPTMEQLSESELNLFVSGR 183 Query: 183 EAAVLMVES-------EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--WDW 233 + +LM+E A LSE+ L A+ + Q ++ K ++ Sbjct: 184 DDELLMIEMKSIRTAQGANELSEENFLEALECAKNYIKNATQTYHQQFAPYKKSPFAFES 243 Query: 234 QPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENEL 293 + ++E L + +++A + K ER+ Q+ + + + E E DE ++ Sbjct: 244 ANDELDEQLLNIIQTHYHTPITEAIKHMAKSERHTQLKALIKQVVR----ECEIEDEKKV 299 Query: 294 GEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353 E + A ++ +VR +L R DGR +R + ++T +LP HGS LFTRG+TQALV+ Sbjct: 300 QEHIMAYKRKLVREMILQSHIRADGRGLKDVRPISIQTNILPFAHGSVLFTRGQTQALVS 359 Query: 354 ATLGTARDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGV 411 AT+G DAQ + L + FLFHYNFP +SVGE M+GS RRE+GHG LAKR + Sbjct: 360 ATIGGDNDAQNYEMLGSKNALKKRFLFHYNFPSFSVGEASMIGSVGRRELGHGNLAKRAL 419 Query: 412 LAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE 471 + + + D T+R+VSEI ESNGSSSMASVCG SLAL G+ +++ +AG+AMGLV + Sbjct: 420 HSSVQEQD---KTIRLVSEILESNGSSSMASVCGGSLALCACGIKVESLIAGVAMGLVTQ 476 Query: 472 GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 + +L+DI G EDH GDMDFKVAG GISA+QMDIK+ GIT+EI+ AL QAK AR Sbjct: 477 DEQCAILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILCQALFQAKEARE 536 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-E 590 IL +ME+A + P+ + I P KI +VIG GG VI+ + E +I++ Sbjct: 537 QILAIMEEARAKIVLND-VILPKSESFMIPPHKIVEVIGAGGRVIKDIIERFEVSIDLAR 595 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEI--------------TAEIEVGRVYTGKVTRIVDFG 636 + G V ++A++ E + A I ++ VG + GK+ +IVDFG Sbjct: 596 ESGMVSVSASNVENLQKAKTFILQLVSSAGTKKEYEKVDWESYAVGERFVGKIKKIVDFG 655 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 FV + G +GL+HIS+I + +++++ E+ ++L ++ ++ L + Sbjct: 656 IFVELPRGGDGLIHISKITKDKTQQLSEIFHNVSELECEILSQNK-NKVELGL 707 >UniRef50_C3XH48 Polyribonucleotide nucleotidyltransferase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XH48_9HELI Length = 734 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 239/706 (33%), Positives = 384/706 (54%), Gaps = 47/706 (6%) Query: 22 MMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRRE 81 A A +VM+ + + + +V + +DF PL+V Y E+ YA G+IP F ++E Sbjct: 47 KYATLADRSVMLKVGGSVLLCSVCVDYENPSSEDFLPLSVQYVEKMYAIGKIPQGFLKKE 106 Query: 82 GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS 141 G+PS+ E LI+RLIDR +RPLFP+ + VQ+ V+S + +++ AM AS L LS Sbjct: 107 GKPSDNEILISRLIDRSLRPLFPKDYPYPVQITILVMSYDNKIDICQKAMNLASICLYLS 166 Query: 142 GIPF--NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESE------- 192 IP G + RV +D++ L ++L ESKLDL V+G V M+E + Sbjct: 167 SIPLTQKGILNGIRVMRRDDEFSLCDDLNDLLESKLDLFVSGINNNVSMIEMQSLKTTTQ 226 Query: 193 --------AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPE-PVNEALN 243 A +S++ +L A+ + + + + + + +++ ++ AL Sbjct: 227 NKDSIIENANEISKNDLLEAINLAKKHIETMSMLYMKHFEPFILEKREYEGSNKLDLALK 286 Query: 244 ARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303 + + + K ER+ Q+ + E ++ L+ + + + AI+K Sbjct: 287 ESLEKEHTDSIKECLCGMSKTERHTQLIALIKEI-----SQTHNLEREIVAKHVFAIKKE 341 Query: 304 VVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 ++RS +L R DGR IR + + + +LP+THGSA FTRG+TQALVT TLG+ DAQ Sbjct: 342 IMRSMILNEGKRADGRALREIREISIESNLLPKTHGSACFTRGQTQALVTCTLGSQNDAQ 401 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 + ++ + +FHYNFPP+SVGE +G+ RRE+GHG LA + + + + + P+ Sbjct: 402 TQEGILTQGKSKIIFHYNFPPFSVGEAYPIGASSRRELGHGNLALKAIESNVANT---PH 458 Query: 424 TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN-YVVLSDIL 482 T+R+VSEI +SNGSSSMASVCGASLAL+ A + + VAGIAMGL+ E + + +LSDI+ Sbjct: 459 TIRLVSEILQSNGSSSMASVCGASLALLGADIKMHNMVAGIAMGLIYESEERFAILSDIM 518 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 G ED GDMDFK+AG+ G SALQ+DIKI G+++ I+ +L QA+ LHIL +M Sbjct: 519 GLEDFDGDMDFKIAGNEKGFSALQLDIKIHGLSESILNQSLEQAREGILHILSLMRNVEI 578 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-DDGTVKIAATD 601 P ++ P+ + + I ++IG+GG IR + +I I+ D+G V I+A + Sbjct: 579 KPNYEL---LPQKESFCVPHTSIGEIIGQGGRTIRDIISRFQVSINIDKDEGIVHISANN 635 Query: 602 GEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 + ++A R+ E+ +VG G V++ V+ G V + G G++ Sbjct: 636 KDSMQNAKNFILDLLRKKEKKELPYKVGECVEGVVSKQVESGFLVDLAQGGNGIL----- 690 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAA 700 R + + LQ+GQ + V++L G+ L I + E++ Sbjct: 691 ---RTISMQEELQIGQALSVRILSCSY-GKTELEIIDKKEENAENL 732 >UniRef50_B3S0I5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S0I5_TRIAD Length = 741 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 236/713 (33%), Positives = 361/713 (50%), Gaps = 66/713 (9%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 G + G +A A +V+V TAV VT V + F PL V+Y+E+ A G Sbjct: 50 GNSEIKFSCGKLATIADGSVLVETGSTAVLVTAVMSRATTSYAGFAPLRVDYREKASATG 109 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 +IP +FF+RE PSE E L +R IDR IR F G EVQ++ +++S + + + + A+ Sbjct: 110 KIPVNFFKRELGPSEREILASRSIDRSIRSSFQRGMPQEVQIVCSLMSADAERDTIVPAI 169 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVES 191 G GA RVGYIND+ ++NPT+ EL +SKLDLV+ + ++M+E Sbjct: 170 NG----------------GAVRVGYINDEVIINPTRVELYQSKLDLVIVASAKGLVMLEG 213 Query: 192 EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAE 251 A L + +L A+ +G E+ Q V++ + + GK + + ++E++ L Sbjct: 214 TASELPDAGVLKAITYGLEEAQNVVKAVEDFGHRYGKDKTNLTFYRLDESIKEGAYNLIG 273 Query: 252 ARLSDAYRITD--KQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 +++D K R + E TL D +L + ++ K + V Sbjct: 274 DQINDIMLDFSHKKLSRDRAARKVVDENFKTLQEMFPNADNFQLSDSFSSVTKRCITQNV 333 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 + R DGR + +R +D + P HGS+LF RGE+Q Sbjct: 334 MTKSIRCDGRGLNDLRPIDAEINIFPALHGSSLFKRGESQ-------------------- 373 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 FPPY+ E G V RREIGHG LAK + +V+ D FP+TVR+ Sbjct: 374 ------------FPPYANNEIGRVMENSRREIGHGTLAKNALRSVV--SDDFPFTVRLTG 419 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGD------NYVVLSDILG 483 ++ SNGS+SMAS CG SLALMDAGVPI +AG+AMGLV NY +L+DI G Sbjct: 420 QVLMSNGSTSMASACGGSLALMDAGVPISRHIAGVAMGLVANPSDDGSKFNYKILTDIAG 479 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED+ G+MDFK+AGSR+GI++LQ D K+ G++ E+++ A+ ++ AR +L +M I+ Sbjct: 480 IEDYFGEMDFKIAGSREGITSLQADFKVTGVSMELIEEAIKKSAVARGKVLDIMYGVIDK 539 Query: 544 PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGE 603 PR D+ AP + + K ++G GG I+ L EE G I D+ V I A + Sbjct: 540 PRLDVKSSAPVFDIVDVPAGKRFSIVGLGGVTIKGLQEEYGCDINFVDEDKVSIYAPSAK 599 Query: 604 KAKHAIRRIEEITAEIEV-----GRVYTGKVTRIVDFGAFVAIGGGKE-GLVHISQIADK 657 + +RIEE+ A+++ ++YTGK+ I +FG + + + L+H+SQ+ + Sbjct: 600 ALANVKQRIEELMADLKEPDLKFSQIYTGKIVDIKNFGVMLEMEPNTQPILLHVSQLDHR 659 Query: 658 RVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAE 708 RV + +G E+ VK D R RLS K + P + + Sbjct: 660 RVSRPELLGYSIGHEMTVKCFGRDPITNRYRLSRKALLPALSSSIFPPNSSTD 712 >UniRef50_Q9ZK11 Polyribonucleotide nucleotidyltransferase n=13 Tax=Helicobacter RepID=PNP_HELPJ Length = 688 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 232/699 (33%), Positives = 370/699 (52%), Gaps = 31/699 (4%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 G T +A+QAT+++M + T + +V +++ +DF PL V + E+ Sbjct: 4 ITINSGNRTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREP-VSEDFLPLVVQFLEK 62 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 +YAAG+IPG F +REGR + E L +RLIDR +RPLFP+ + Q+ V++ + + + Sbjct: 63 SYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLNHDIENDL 122 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 + A+ ASA L L+ I + A R+ +++++++NP+ L +S LDL V+GT+ ++ Sbjct: 123 QVSALNAASATLFLAHIAPIKSVSACRIARVDNEFIINPSASLLNQSSLDLFVSGTKESL 182 Query: 187 LMVESEA-----QLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR--WDWQPEPVN 239 M+E + L E ML A+ + + E + + +N Sbjct: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLKETCALYEEAFTPYQNELLFKEGEGIVLN 242 Query: 240 EALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHA 299 E L + + + ER + + E + E+ L Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALSER----ENVFKEVAKKISEAHSEFSLEEIELSLEK 298 Query: 300 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 359 ++K +R ++ + R D R + +R + + + +LP H S LFTRG+TQ+LV LG Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMD 358 Query: 360 RDAQVLDELMGER--TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 DAQ + L + + F+FHYNFPP+ VGE +G+ RRE+GHG LAKR + + + Sbjct: 359 NDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418 Query: 418 MDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVV 477 + +R+VSEI ESNGSSSMASVC SLAL +GV I VAG+AMG+V E ++ + Sbjct: 419 KE---QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAI 475 Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 LSDI G ED GDMDFK+AG+ +GI+A+QMD K+ GI E++ AL QAK AR HIL +M Sbjct: 476 LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILKIM 535 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-GTVK 596 +A + S P+ + PDKI ++IG+GG VI+ + E+ I++ G VK Sbjct: 536 HEAKEKIVINFS-HLPQTEIFNVAPDKIIEIIGQGGRVIKEIVEKFEVKIDLNTPSGEVK 594 Query: 597 IAATDGEKAK------HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 I K + + +++ + + V +V RIVDFGAF+++ G EGL+ Sbjct: 595 IMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLR 654 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 689 + +V L+ G + +V+ ++ G+I L + Sbjct: 655 KQNMDKCQV-----ILKEGDSIRCRVISFNK-GKIALDL 687 >UniRef50_A8XLU8 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XLU8_CAEBR Length = 802 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 211/654 (32%), Positives = 339/654 (51%), Gaps = 35/654 (5%) Query: 3 NPIVRKFQYGQH-TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV 61 N + ++ L+TG MAR A+AAV+ S D +V TVV +K+ + + PL V Sbjct: 24 NERSVSVDFNGKNSLELKTGHMARFASAAVVASSGDNSVMATVVQRKQKQGDGNGVPLQV 83 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 Y+ A GRIP +F RRE S+ E LI+R IDR IRPL P E QVI ++++ Sbjct: 84 EYRPSASAVGRIPTNFLRRELSQSDNEILISRAIDRSIRPLMPAN-SYETQVICKPLALD 142 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARV-----GYINDQYVLNPTQDELKESKLD 176 + ++ + AS+AL +S PFNGP+ A RV G I + +NP Q+ELK S ++ Sbjct: 143 ENADQIMLGINAASSALHISSAPFNGPLAAIRVSMDPRGKI---FHVNPGQEELKASSMN 199 Query: 177 LVVAGTEA-AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQP 235 ++VA +M+E + + +Q+ A+ + + + ++EL G + + Sbjct: 200 MIVAMRRNQKTVMIELDGEETRGEQLEEALDVAFQNVERLHVAMDELG---GIEKDELPE 256 Query: 236 EPVNEALNARVAALAEARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENEL 293 + + + ALA R+ DK R ++ I + I + ++ Sbjct: 257 KTTTMEILEILEALARERIYYVMTDSTHDKISRDEEIKAIMEDVIG--TEALQPFPPADI 314 Query: 294 GEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVT 353 + + K V+R L+ R DGR R + ++ + + HG ++F RG+TQ + T Sbjct: 315 YQCWSFLVKKVLRETTLSTGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMST 374 Query: 354 ATLGTARDAQVLDE----LMGERTDTFLFHYNFPPYSVGETG--MVGSPKRREIGHGRLA 407 T + A D L +R +F+ HY FP ++ + G S RREIGHG LA Sbjct: 375 VTFDSPTAAFHPDSVAQLLGSQRKKSFMLHYEFPSFATNDIGVSASRSLNRREIGHGALA 434 Query: 408 KRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMG 467 ++ + + P FPY VR+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+G Sbjct: 435 EKALKPLFPTG--FPYAVRLACQVLESNGSSSMASVCGGSLALYDAGVPMKNAAAGVAIG 492 Query: 468 LVKEGD----NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 L+ + NY VL+DILG ED+ GDMDFK+AG+++G +A Q+D+K +G+T++ ++ +L Sbjct: 493 LISDEKEPETNYKVLTDILGIEDYAGDMDFKIAGTKNGFTAAQLDVKNDGLTRQQLRESL 552 Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 583 + A+ H+LG M + PR P I +++I P K + G + + ET Sbjct: 553 DAARAGIDHVLGKMAIIRDRPREQPKSTVPIIESMRIEPHKRVTLFRNNGYNCKLIEAET 612 Query: 584 GTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRI 632 G I +ED+ + + A EK + A+ + + + G + ++ + Sbjct: 613 GVKISVEDESNISLLAPSQEKLQKALSMMNGVLESNTTLDFAFGSIIQAEIVEL 666 >UniRef50_Q965N3 Putative uncharacterized protein n=2 Tax=Caenorhabditis elegans RepID=Q965N3_CAEEL Length = 745 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 211/649 (32%), Positives = 330/649 (50%), Gaps = 27/649 (4%) Query: 4 PIVRKFQYGQHT-VTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVN 62 + + + L+ G +AR A++ V+ S D AV TVV +K + PL V Sbjct: 25 EQSVAVDFDGKSGIELKAGHLARFASSTVVASFGDNAVMATVVQRKSKQGDGSGVPLQVE 84 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 Y+ A GRIP +F RRE S+ E LI+R IDR IRPL P G E Q+I ++++ Sbjct: 85 YRPSASAIGRIPTNFLRRELSQSDNEILISRAIDRSIRPLLP-GNSYETQIICKPLALDE 143 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIN-DQYVLNPTQDELKESKLDLVVAG 181 + ++ + AS AL +S +NGP+ A RV + +NPTQ+EL+E+ L+L+VA Sbjct: 144 NADQIMLGINAASTALQISSAAYNGPLAALRVARTARGDFHVNPTQEELREASLNLIVAM 203 Query: 182 TE-AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 240 + +M+E + + S + + A+ + + + +L E P+ + E + Sbjct: 204 RKHEKTVMIELDGRESSAEHLEHALDVAFRHVAKLHEAMEQLTAE---PKDELASEDFS- 259 Query: 241 ALNARVAALAEARLSDAYRI--TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILH 298 L + A R+ DK R ++ I E A +T +++ + Sbjct: 260 GLERLLEETARERIYYVITDAGHDKISRDMEIKAIFEEICAE--KAFQTCEKDAIYRTYS 317 Query: 299 AIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT 358 + K V+R L R DGR D R + + + + HG ++F RG+TQ + T T + Sbjct: 318 TLVKKVLRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDS 377 Query: 359 ARDAQVLDE----LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV 414 A D L +R +F+ HY FP +++ E G S RREIGHG LA++ + + Sbjct: 378 PAAAFHPDSVAQLLGSQRKKSFMLHYEFPGFAINEFGTTRSLNRREIGHGALAEKSLKNL 437 Query: 415 MPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN 474 P FPY R+ ++ ESNGSSSMASVCG SLAL DAGVP+K A AG+A+GL+ + Sbjct: 438 FP--ADFPYATRLACQVLESNGSSSMASVCGGSLALFDAGVPMKNAAAGVAIGLISDEAE 495 Query: 475 ----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR 530 Y VL+DILG ED+ GDMDFKVAG+RDG +A Q+D+K G+T+ + +L A+ Sbjct: 496 PETKYRVLTDILGIEDYAGDMDFKVAGTRDGFTAAQLDVKNGGLTRRQLTESLQAARAGI 555 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 H+L M + PR P I +++I P K + G + + ETG I E Sbjct: 556 DHVLQKMSVMRDRPREQFKPTVPIIQSMRIEPHKRVTLFRNNGYNCKLIEAETGVKISAE 615 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITA-----EIEVGRVYTGKVTRIVD 634 D+ + + A D EK + A+ + ++ + G + ++ +V+ Sbjct: 616 DEAHISLLAQDKEKLQKAMDMMNDVLESNSTLDFAFGSIVQAEIVEVVN 664 >UniRef50_Q01D77 Putative polynucleotide phosphorylase (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01D77_OSTTA Length = 615 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 191/504 (37%), Positives = 273/504 (54%), Gaps = 47/504 (9%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQ 64 + + + G V LETG + QA AVM S DT ++ T ++ F PLTVNY Sbjct: 71 MSIELEIGASRVRLETGRVGAQANGAVMASEGDTVIYATACASRELTGDGSFVPLTVNYS 130 Query: 65 ERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQV 124 ER AAGR G F +R+G SE ETL ARL+DRPIRP+ P+G+ + QV+ ++S + + Sbjct: 131 ERFSAAGRTAGGFRKRDGAVSERETLKARLVDRPIRPMIPKGWGYDTQVLQWLMSFDGER 190 Query: 125 NPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESKLDLVVAGT 182 + D +A+ ASAAL++S IP P+ RVG + + ++NP+Q+++KES+LDLV+AGT Sbjct: 191 STDALAITAASAALAVSDIPLKKPVVGVRVGLMPGSDEPIVNPSQEQMKESRLDLVLAGT 250 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEAL 242 + AVLM+E L+ D+ML A+ GHE + I+ + P+ + + E + Sbjct: 251 DEAVLMIEGFCDFLTTDEMLRAIAKGHEAVSKACKEIDAWAQTVAPPKMNEKLIVPPEGV 310 Query: 243 NARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDEN----------- 291 + V AL A L++A I KQ R A + + + L + E Sbjct: 311 DEAVEALVGAELAEAIVIPIKQVRGATIGAARERAVEALKDQYEVRLRRLAPSRELDCAL 370 Query: 292 ----------------------------------ELGEILHAIEKNVVRSRVLAGEPRID 317 + +E +R + R D Sbjct: 371 PIRRNRFSREFVGCGSTASAYKNVNALNGRPAHLAVINACGKVESRALRDTIRTKGRRQD 430 Query: 318 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFL 377 GR M+R + G+LPRTHGSALFTRGETQA+ ATLG +DAQ +D++ F+ Sbjct: 431 GRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQDAQRVDDIEKTEDKRFM 490 Query: 378 FHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGS 437 HY FPP SVGETG +G RRE+GHG LA+R + ++P ++FP+ R+ S ITESNGS Sbjct: 491 LHYFFPPSSVGETGRIGGASRREVGHGNLAERALTPIIPSQEEFPFVCRMESTITESNGS 550 Query: 438 SSMASVCGASLALMDAGVPIKAAV 461 SSMA+VC +LAL+DAGVP+K V Sbjct: 551 SSMATVCAGTLALLDAGVPLKRYV 574 >UniRef50_Q4SQL7 Chromosome 17 SCAF14532, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SQL7_TETNG Length = 556 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 152/431 (35%), Positives = 245/431 (56%), Gaps = 11/431 (2%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + + +G +AR A + +V + +T+V VT V + K P Q F PL V+Y+++ AAGRI Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQ-FMPLVVDYRQKAAAAGRI 59 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 P ++ RRE ++ E L +RLIDR +RPLFP G+ + QV+ +++V+ +PD++A+ Sbjct: 60 PTNYLRRELGTTDNEILTSRLIDRSVRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINA 119 Query: 134 ASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVESE 192 ASAAL+LS IP+NGPIGA RVG ++ + ++NPT+ E+ S L+LVV+G ++ V+M+E+ Sbjct: 120 ASAALALSDIPWNGPIGAVRVGLVDGELLINPTRAEMSSSTLNLVVSGGPSSQVVMIEAS 179 Query: 193 AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW-DWQPEPVNEALNARVAALAE 251 A+ + + AV G + Q +I I +L +E + + + V +A Sbjct: 180 AENVLQQDFCHAVKVGIKHTQQIIHAIQQLAREQKVTKRTPVKVFSAPADVVEYVRQVAS 239 Query: 252 ARLSDAYR--ITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRV 309 + + DK R ++ ++ ET T+ + E+ E + + K++ R+ V Sbjct: 240 ESIYAVFTDYTHDKISRDEAINKVRLETEETIKDRFPQAEPFEVIESFNTVCKDIFRNLV 299 Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD--- 366 L R DGRE +R + + HGSALF RG+TQ L + T + + D Sbjct: 300 LNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSVTFDSLESSVKADIIT 359 Query: 367 -ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 L G + F+ HY FPPY+ ETG V RRE+GHG LA++ + +V+P +FP+T+ Sbjct: 360 TALSGIKDKNFMLHYEFPPYATNETGKVAGLNRRELGHGALAEKALRSVIP--KEFPFTI 417 Query: 426 RVVSEITESNG 436 RV +E+ ESNG Sbjct: 418 RVTAEVLESNG 428 Score = 53.8 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 99/294 (33%), Gaps = 32/294 (10%) Query: 325 RGLDVRTGVLPR-THGSALFTRGETQALVT-ATLGTARDAQVLDELMGERTDTFLFHYNF 382 R L++ +G L R GSA+ GET +VT + +Q + + Y Sbjct: 1 RKLEISSGRLARFADGSAVVQLGETSVMVTAVSKTKPSPSQFMP---------LVVDYRQ 51 Query: 383 PPYSVGE------TGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG 436 + G +G+ EI RL R V + P Y +V+ + +G Sbjct: 52 KAAAAGRIPTNYLRRELGTTDN-EILTSRLIDRSVRPLFPAGYF--YDTQVLCNLLAVDG 108 Query: 437 SSSM--ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 494 + ++ AS AL + +P + + +GLV + +L + E ++ Sbjct: 109 VNDPDVLAINAASAALALSDIPWNGPIGAVRVGLV----DGELLINPTRAEMSSSTLNLV 164 Query: 495 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 554 V+G + + E + ++ A+ K H ++ R Sbjct: 165 VSGGPSSQVVMI-EASAENVLQQDFCHAV---KVGIKHTQQIIHAIQQLAREQKVTKRTP 220 Query: 555 IHTIKINPDKIKDVIGKGGSVI-RALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + D ++ V I T+ T I D+ K+ E K Sbjct: 221 VKVFSAPADVVEYVRQVASESIYAVFTDYTHDKIS-RDEAINKVRLETEETIKD 273 Score = 51.9 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 16/107 (14%) Query: 28 TAAVMVSMDDTAVFVTVV---GQKKAKPGQDFFPLT--------VNYQERTYAAGRIPGS 76 + + T V +V + K L+ ++Y+ YA Sbjct: 328 HGSALFQRGQTQVLSSVTFDSLESSVKADIITTALSGIKDKNFMLHYEFPPYATNET--- 384 Query: 77 FFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 + + E L ++ +R + P+ F ++V A V+ N + Sbjct: 385 --GKVAGLNRRELGHGALAEKALRSVIPKEFPFTIRVTAEVLESNGE 429 >UniRef50_B8C7U5 Putative uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C7U5_THAPS Length = 659 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 222/674 (32%), Positives = 350/674 (51%), Gaps = 59/674 (8%) Query: 58 PLTVNYQERTYAAGRIPGSFFRR---EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI 114 PL V+Y+ER +AAG+IP RR G ++ E L +R+IDR IRP G + + I Sbjct: 1 PLQVDYRERYHAAGKIPVHNRRRRDNSGPLTDREVLASRVIDRTIRPWLMMGLASSDKAI 60 Query: 115 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI----NDQYVLNPTQDEL 170 + + N VN ++ + S A S++G F P+ AA + + V +P+ +E Sbjct: 61 S--LPGNIVVNCEVQSY--DSRASSINGKKFPVPLKAAACVKLAIQRDGSVVYDPSPNES 116 Query: 171 KESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 +++K +L+ AGT+ VLM+E E +SE + A++ E +I+ +L + Sbjct: 117 EDAKFELLYAGTKDRVLMLEFEDPGVSETTVANALMLAQEAILPIIEQQEQLRQNYRYNA 176 Query: 231 WDWQPEPVNEA----------LNARVAALAEARLSDAYRIT-DKQERYAQVDVIKSETIA 279 D E + L E D ++ D E + I + Sbjct: 177 SDSTGEELMTDGEVAQLLGLNSFEETTTLDEVHCEDGAKLFGDNGEESPTIQNIPAHIHD 236 Query: 280 ------TLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGV 333 + E + ++E+ +L N R DGR + +R + T + Sbjct: 237 GTLLSKQVRGRREYIVKSEITRLLKCAMIN----------LRADGRGTNAVRPISATTPI 286 Query: 334 LPRT-HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM 392 P HGS+ F+RGETQ + TA++G D + + HY+FP +S G Sbjct: 287 FPDCVHGSSQFSRGETQVICTASIGAPSDG--VPHASPYSDSSAFLHYDFPDFSTGTVKS 344 Query: 393 VG--SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL 450 G S RR IGHG LA++ VL V+P++ FPY VR+ E+T SNGSSSMA+ CG++LAL Sbjct: 345 KGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSSMAAACGSTLAL 404 Query: 451 MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 +DAGVP+ + VAG+++GL D+ +L DI G EDH GDMDFKV G+ G+ ++Q+D+K Sbjct: 405 LDAGVPLVSPVAGVSVGLTP--DSKTLLLDITGTEDHYGDMDFKVCGTSGGVLSMQLDVK 462 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAIN--APRGDISEFAPRIHTIKINPDKIKDV 568 +T +++ AL+ AK R IL M + + PR + APRI +K +P++ +D+ Sbjct: 463 NP-VTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDL 521 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 IG GGSV+R L + ++++ DG + A + A R I ++ A++E G VY G Sbjct: 522 IGPGGSVLRQLEDRFNVSLDLSQDGLIFGAL---QAVSGAKRVIMDLVADVEEGGVYEGT 578 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT-------DYLQMGQEVPVKVLEVDR 681 V I DFGA V + KEGL+H+S++ADK + D+L++G ++ V ++D Sbjct: 579 VIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDH 638 Query: 682 -QGRIRLSIKEATE 694 QG I+LS K+ + Sbjct: 639 VQGSIKLSRKKLLQ 652 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 18/224 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT-----VNYQERTY 68 ++ T + + S +T V T + P + ++Y + Sbjct: 278 RPISATTPIFPDCVHGSSQFSRGETQVICTASIGAPSDGVPHASPYSDSSAFLHYDFPDF 337 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPE--GFVNEVQVIATVVSVNPQVNP 126 + G + + E + L ++ + P+ P F V++ V S N + Sbjct: 338 STGTVKS---KGESSANRRAIGHGNLAEKAVLPVLPNIHDFPYAVRLTCEVTSSNGSSS- 393 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLVVAGTEA 184 + A G++ AL +G+P P+ VG D +L+ T E +D V GT Sbjct: 394 -MAAACGSTLALLDAGVPLVSPVAGVSVGLTPDSKTLLLDITGTEDHYGDMDFKVCGTSG 452 Query: 185 AVLMVESE-AQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 VL ++ + ++ + A+ + + ++ + KE G Sbjct: 453 GVLSMQLDVKNPVTMKVIASALSLAKDGRNAILAAM---GKEVG 493 >UniRef50_A9VAY8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAY8_MONBE Length = 629 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 186/590 (31%), Positives = 294/590 (49%), Gaps = 37/590 (6%) Query: 5 IVRKFQYGQH-TVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL--TV 61 I + G H T G +A QA AV + + P PL V Sbjct: 39 ITSEAATGSHEPATFTCGALAYQADGAVTLDQ---------ACPLHSTPSPFLTPLLQQV 89 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 +Y+ER A IP SF RREG + ETL+ARL+DR +RPL P Q+ +++ Sbjct: 90 DYRERGTAVNLIPKSFHRREGGERDRETLVARLVDRSLRPLVPSDVAASTQMTVKLLASQ 149 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-------NDQY---VLNPTQDELK 171 ++ P + ++ ASAAL +S I ++GP+ A RVG +D+ ++NP E Sbjct: 150 ARMEPTVQSIEAASAALMVSDISWHGPVAAVRVGVRKALEVASDDEPYELLINPDHKETA 209 Query: 172 ESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRW 231 E L+ +G +A +M++ E L + A+ H+ Q ++ EL + AG+ + Sbjct: 210 ECVGVLLYSGVQAGAVMIDFEGAELPLPALKRALRAAHQHIQPSLEAQRELGERAGRTKK 269 Query: 232 DWQPEPVNEALNARVAALAEARLSDAYRIT--DKQERYAQVDVIKSETIATLLAEDETLD 289 EP+ + A + + R+ K++R +++ I + A LL + Sbjct: 270 PLLREPLALGIMAAAITQGLESVLEVLRMHMLSKRDRIERLNSITDQLEADLLQQFPMAG 329 Query: 290 ENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQ 349 + + L + K +R VL+ + RIDGR+ D ++ + + P HG++LF RGETQ Sbjct: 330 LRLVDDALEEVLKEALRQLVLSEDTRIDGRDFDEVQAVQAAINLYPELHGNSLFQRGETQ 389 Query: 350 ALVTATLGTARDAQVLDELM-----GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHG 404 TATLG + LDE+ +F F Y FP Y++ + + RRE GHG Sbjct: 390 VFCTATLGDRDAVKRLDEIEVAVAGLSPQKSFFFDYEFPAYAINKIRVRRGQMRRETGHG 449 Query: 405 RLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGI 464 LA+R + ++ + TVRV S++T S GSSSMASVCG SLA+MDAGVP++A VAG+ Sbjct: 450 SLAERALGRMID--PGYENTVRVTSQVTSSFGSSSMASVCGGSLAMMDAGVPLRAPVAGL 507 Query: 465 AMGLVKEGDN------YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEI 518 + GLV D Y +L+D+ G ED G MD K+A ++ G++A+Q D ++ GI+ ++ Sbjct: 508 SCGLVGYTDEEGQLTKYQLLTDLKGFEDIYGAMDLKMASTQSGVNAIQFDTELRGISLDV 567 Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 ++ A+ + + +L M A+ A R D P PD + + Sbjct: 568 LEEAMQRTFDGKQVVLKEMNAAMPATRTDPKACHPMTCESSSAPDAFQPL 617 >UniRef50_C0JZU1 Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=uncultured bacterium URE12 RepID=C0JZU1_9BACT Length = 316 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 159/307 (51%), Gaps = 4/307 (1%) Query: 5 IVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK-PGQDFFPLTVNY 63 + Q G T+ ETG +A+QA AV + + +T VF K K +F PL+ +Y Sbjct: 8 TRLETQVGDKTLYFETGELAKQAGGAVTLRLGETIVFSACCQASKPKDTPPEFTPLSCDY 67 Query: 64 QERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQ 123 +E+TYAAG+IPG FF+REG+ + E L +RL DR +RPLFP+ F E QV + V+S + + Sbjct: 68 REKTYAAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFPDYFNTETQVNSLVISADGK 127 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTE 183 D++++ +SAAL +S IPFNGP+GA R+G N +++ P +E +++LV++GT Sbjct: 128 NEADVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFPQHEERPGLEMELVISGTR 187 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALN 243 +LMVE + + ++ A+ H + + E+ K GK + +N L Sbjct: 188 QGILMVEGGGKQIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINPELK 247 Query: 244 ARVAALAEARLSDAYRI-TDKQERYAQVDVIKSETIATLLAEDETLD--ENELGEILHAI 300 A V ++ L KQ A + IK + ++A+ + I+ I Sbjct: 248 AAVEEMSREPLKKLLASRPVKQVLEAGMSEIKDKASDAMVAKYPDDSTASYQAKTIVEDI 307 Query: 301 EKNVVRS 307 RS Sbjct: 308 IYEESRS 314 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 100/308 (32%), Gaps = 32/308 (10%) Query: 327 LDVRTGVL-PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPY 385 L TG L + G+ GET + ++ D Y Y Sbjct: 19 LYFETGELAKQAGGAVTLRLGETIVFSAC----CQASKPKD--TPPEFTPLSCDYREKTY 72 Query: 386 SVGET-----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSM 440 + G+ G + +EI RL R V + P D F +V S + ++G + Sbjct: 73 AAGKIPGGFFKREGKARDKEILASRLTDRSVRPLFP--DYFNTETQVNSLVISADGKNEA 130 Query: 441 --ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGS 498 S+ +S ALM + +P V + +G + +E +M+ ++G+ Sbjct: 131 DVLSINASSAALMISDIPFNGPVGAVRIGKKNGKFIFFP----QHEERPGLEMELVISGT 186 Query: 499 RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM--------EQAINAPRGDISE 550 R GI ++ K I + A+ A + I + +Q +I+ Sbjct: 187 RQGILMVEGGGK--QIPNSDLISAMETAHPEIVKICDLQIEMQKLVGKQKTPVATPEINP 244 Query: 551 FAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR 610 K + + V + L + D V D + A Sbjct: 245 ELKAAVEEMSREPLKKLLASR--PVKQVLEAGMSEIKDKASDAMVAKYPDDSTASYQAKT 302 Query: 611 RIEEITAE 618 +E+I E Sbjct: 303 IVEDIIYE 310 >UniRef50_B7FVX4 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVX4_PHATR Length = 956 Score = 304 bits (779), Expect = 7e-81, Method: Composition-based stats. Identities = 166/566 (29%), Positives = 260/566 (45%), Gaps = 96/566 (16%) Query: 233 WQPEPVNEALNARVAALAEARLSDAYR---ITDKQERYAQVDVIKSET----IATLLAED 285 + + N + + + + A + K R + ++++E + + A Sbjct: 392 LPADTETDRNNEKNRTVVDQSMGAAIHRGDLPSKTVRGRREQIVQTEIARLVESYVTAAG 451 Query: 286 ETLDENELGEILHAIEKNVVR----SRVLAGEPRIDGRE-----KDMIRGLDVRTGVLPR 336 + + EL + K++++ L G R DGR IR L V+ LP Sbjct: 452 DAFEPRELQWLSEQTTKHLLQKGFVQSALQGGARADGRGLPGHGWKTIRPLKVQMPALPD 511 Query: 337 -THGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFH----------YNFPP- 384 HGSALF RG+TQ L TATLG D Q + + + Y+ P Sbjct: 512 TVHGSALFARGDTQVLCTATLGPPGDGQPMKDPYLATDNPRRVKSGAETTAAGYYSELPV 571 Query: 385 ----Y--------SVGETGMVGSPKRREIGHGRLAK------------------------ 408 + S + V + K R G LA+ Sbjct: 572 GSLRFLRTQESLVSDMNSRKVKADKERTGDSGSLAEVKRAFLQYDFPPYATGTVPIGSQA 631 Query: 409 -------------RGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGV 455 + +L V+PD FPY +R+ SE+T+SNGSSSMASVCG +LAL+DAGV Sbjct: 632 HNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEVTDSNGSSSMASVCGGTLALLDAGV 691 Query: 456 PIKAAVAGIAMGLVKEGDN-----YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK 510 PI+ VAG+++GL ++ D + +L DI G ED+ G MDFK+AG+R GI+A Q+D+K Sbjct: 692 PIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTEDYYGGMDFKIAGTRKGITAFQLDVK 751 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINA---PRGDISEFAPRIHTIKINPDKIKD 567 + + EI+ AL A R IL M+ + R + APR+ ++ NP + +D Sbjct: 752 -QLLPLEIVTEALQLACRGRNVILNEMQDQCSDGLKARPSPKDSAPRVEVVRFNPQRKRD 810 Query: 568 VIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTG 627 ++G GG ++R L + G +++ +G + D E A + ++ A++ G VY G Sbjct: 811 LVGPGGIILRQLEDRYGVALDLTQEGRCLLFGADQELVDQAKLTVMDLVADVVPGEVYEG 870 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRV--EKV-------TDYLQMGQEVPVKVLE 678 + I DFGA V + KEGL+H+S++ +++ + YL+ GQ+V V + Sbjct: 871 TIIEIKDFGAIVELLRNKEGLLHVSELTNEQEAGDHPGGIAGFVRQYLKEGQKVEVLCTD 930 Query: 679 VDR-QGRIRLSIKEATEQSQPAAAPE 703 VD QG IRLS K + Q A Sbjct: 931 VDPVQGSIRLSRKAILVKEQKKAMRR 956 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 40/255 (15%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF-----FP 58 P + TG +AR ++V+ T V TV Q P D Sbjct: 51 PATFSRLIEGPPIQFGTGKLARLTHSSVVGQGGSTVVLATVAHQPPDTPNGDQNNAASTF 110 Query: 59 LTVNYQERTYAAGRIPGSFFRREGR-PSEGETLIARLIDRPIRPLF--PEGFVNEVQVIA 115 LTV+Y++R + G+IP + RR+ S E L +R IDR +RPL + + V Sbjct: 111 LTVDYRQRYHGVGKIPSNGGRRDNAVLSTPEVLASRAIDRALRPLIRTEDAIDGRLHVTC 170 Query: 116 TVVSV-----------NPQVN-PDIVAMIGASAALSLSGIPFNGPIGAARVGYI------ 157 +V S + ++ D A + + ++ + G++ Sbjct: 171 SVQSYEVFASEVDLRQDGLLDEKDNDATNASHSTHPVAMALNTAAAALLQQGHLTQPVAA 230 Query: 158 ---------NDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVESE----AQLLSEDQMLG 203 + +P ++L +S +L+ AGT V+M+E A LSE M Sbjct: 231 TVLAVAAHGDGVVWQDPVPEQLADSYGELLYAGTADGHVVMLEWTSHRLATGLSESHMTQ 290 Query: 204 AVVFGHEQQQVVIQN 218 + + V+ Sbjct: 291 LLELAQTSIRPVLDL 305 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 61 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPE--GFVNEVQVIATVV 118 + Y YA G +P + L ++ + P+ P+ F +++ + V Sbjct: 613 LQYDFPPYATGTVPIG----SQAHNRRAIGHGALAEKALLPVLPDAHDFPYAIRISSEV- 667 Query: 119 SVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYIND---------QYVLNPTQDE 169 + + + ++ G + AL +G+P P+ VG D + +L+ T E Sbjct: 668 -TDSNGSSSMASVCGGTLALLDAGVPIQMPVAGVSVGLARDVDAGEAGVHRLLLDITGTE 726 Query: 170 LKESKLDLVVAGTEAAVLMVESEAQL-LSEDQMLGAVVFGHEQQQVVIQNINE 221 +D +AGT + + + + L + + A+ + V++ + + Sbjct: 727 DYYGGMDFKIAGTRKGITAFQLDVKQLLPLEIVTEALQLACRGRNVILNEMQD 779 >UniRef50_D2VEP3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VEP3_NAEGR Length = 248 Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 14/243 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR IR + + + R GSA + +G T+ L R+ + Sbjct: 6 EYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVY--GPREVKNKS 63 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 ++ Y+ +S GE RR + ++ +V+ +P T + Sbjct: 64 QMKN-DRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVI-LTHLYPRTQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A + A+LAL+DAG+P+K V A G ++ L+D+ E Sbjct: 122 DIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGS----PLTDLNYIE 177 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D G D +A D ++ LQMD K+ + + + L A I V+++ + Sbjct: 178 DCAGGPDVPIALLPKHDKVTLLQMDSKL---SLDQFEKVLEHAIEGCKQIHKVIDEQLKK 234 Query: 544 PRG 546 Sbjct: 235 HTY 237 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 9/219 (4%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 + + + +R A + +T V V G ++ K A Sbjct: 22 EIRNIKFKLNLFSR-ADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMAT 80 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA--TVVSVNPQVNPDIV 129 +R+ + T I+ +I + + Q+ V+ + Sbjct: 81 -FSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRC--A 137 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKES--KLDLVVAGTEAAVL 187 + A+ AL +GIP + + G+I + + E + + + V Sbjct: 138 CINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVT 197 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 +++ +++ LS DQ + E + + + I+E +K+ Sbjct: 198 LLQMDSK-LSLDQFEKVLEHAIEGCKQIHKVIDEQLKKH 235 >UniRef50_Q6PBZ8 Exosc4 protein n=10 Tax=Metazoa RepID=Q6PBZ8_DANRE Length = 245 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 10/248 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR+ +R + R V + GSA +G T+AL + + Sbjct: 5 ELLSDQGYRLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVY--GPHEIRGSR 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 Y+ +S E R+ K+ A + + +P + + Sbjct: 63 SKSLHDRAIINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAV-LTELYPRSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + +I +++G + A V A+LAL+DAG+P++ V + G V++ L+D+ E Sbjct: 122 DIYVKILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFVED----TPLADLCHAE 177 Query: 486 DHLGD--MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + G + + I+ LQMD ++ + + A A +L + + Sbjct: 178 ESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTACKEFSKVLDSVVRQHLE 237 Query: 544 PRGDISEF 551 D++ Sbjct: 238 EVSDLTRD 245 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 67/206 (32%), Gaps = 9/206 (4%) Query: 26 QATAAVMVSMDDTAVFVTVVGQKKAKPGQDF-FPLTVNYQERTYAAGRIPGSFFRREGRP 84 QA + + +T V G + + + + A + +R Sbjct: 34 QADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAIINCQYSMAT-FSTAERKRRPHG 92 Query: 85 SEGETLIARLIDRPIRPLFPEGFVNEVQVIATV--VSVNPQVNPDIVAMIGASAALSLSG 142 + ++ + + Q+ V + + + A+ AL +G Sbjct: 93 DRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADGGN--YSACVNAATLALVDAG 150 Query: 143 IPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQ 200 IP + A G++ D + + E L +A + +++ +A+ L +D Sbjct: 151 IPMRDYVCACSAGFVEDTPLADLCHAEESGGGTALALALLPRSGNIALLQMDAR-LHQDH 209 Query: 201 MLGAVVFGHEQQQVVIQNINELVKEA 226 + + + + ++ +V++ Sbjct: 210 LDTLMEAAMTACKEFSKVLDSVVRQH 235 >UniRef50_Q9SP08 Exonuclease RRP41 n=15 Tax=Magnoliophyta RepID=Q9SP08_ARATH Length = 241 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 14/248 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V R+DGR + +R + GV+ + GSA+F G T+ + R+ Q Sbjct: 2 EYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVY--GPREIQNKS 59 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + L Y+ +S G+ RR + ++ + A + + P++ + Sbjct: 60 QQKKNDHAVVLCEYSMAQFSTGDR-RRQKFDRRSTELSLVIRQTMEACI-LTELMPHSQI 117 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A + A+LAL DAG+P++ + G + N L D+ E Sbjct: 118 DIFLQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYL----NSTPLLDLNYVE 173 Query: 486 DHL--GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D D+ + D +S LQMD K+ E + A I + + + Sbjct: 174 DSAGGADVTVGILPKLDKVSLLQMDAKL---PMETFETVFALASEGCKAIAERIREVLQE 230 Query: 544 PRGDISEF 551 + Sbjct: 231 NTKQLEYR 238 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 19/225 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK-----PGQDFFPLTVNYQERTY 68 + E G++++ A + + M +T V V G ++ + D + Y + Sbjct: 20 RQIVAEVGVVSK-ADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVVLCEYSMAQF 78 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNP 126 + G RR + T ++ +I + + +++ + V+ + Sbjct: 79 STG------DRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGGTRS 132 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEA 184 + A+ AL+ +GIP + GY+N +L+ E D+ V Sbjct: 133 --ACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPKLD 190 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 V +++ +A+ L + E + + + I E+++E K Sbjct: 191 KVSLLQMDAK-LPMETFETVFALASEGCKAIAERIREVLQENTKQ 234 >UniRef50_UPI00006A4B1C PREDICTED: similar to LOC495942 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A4B1C Length = 247 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 94/253 (37%), Gaps = 12/253 (4%) Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 + R DGR+ +R + GV + GSA +G T+ L G + + Sbjct: 4 FELISDEGYRFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIY-GPHEASNNM 62 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT- 424 + ++ +S E R+ K+ A + +P + Sbjct: 63 RSRVCLDKCFINCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAV-RTQLYPRSQ 121 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + + ++ S+GS A V A+LAL+DAG+ +K V + L KE L DI Sbjct: 122 IDIYLQVLHSDGSLYCACVNAATLALIDAGIAMKDYVCACSASLTKETS----LIDINHV 177 Query: 485 EDHLGDMDF--KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 E+ G +F + D I +++ +I + A+ I V+++ + Sbjct: 178 EELAGCAEFSAAIMPKLDQIIYSELNGRIHQDELGQLVDAV---TNGCKDIFAVIDRFVR 234 Query: 543 APRGDISEFAPRI 555 + + + + Sbjct: 235 SRLEETASYFTHS 247 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 68/222 (30%), Gaps = 19/222 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG------QDFFPLTVNYQERT 67 V G+ QA + + +T V + G +A D + + + Sbjct: 23 RRVRCNMGVFT-QADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCFINCEFSQA- 80 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIAT--VVSVNPQVN 125 + ++ R ++ I + Q+ V+ + + Sbjct: 81 ----MFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSDG--S 134 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ-DELKE-SKLDLVVAGTE 183 + A+ AL +GI + A + +++ +EL ++ + Sbjct: 135 LYCACVNAATLALIDAGIAMKDYVCACSASLTKETSLIDINHVEELAGCAEFSAAIMPKL 194 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 ++ E + + +D++ V + + I+ V+ Sbjct: 195 DQIIYSELNGR-IHQDELGQLVDAVTNGCKDIFAVIDRFVRS 235 >UniRef50_Q9NPD3 Exosome complex exonuclease RRP41 n=11 Tax=Coelomata RepID=EXOS4_HUMAN Length = 245 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 99/246 (40%), Gaps = 13/246 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR +R + R GV + GSA +G T+AL + + Sbjct: 5 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVY--GPHEIRGSR 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 Y+ +S GE R+ G ++ A + P + + Sbjct: 63 ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAI-LTQLHPRSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A V A+LA++DAG+P++ V + G V L+D+ E Sbjct: 122 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTA----LADLSHVE 177 Query: 486 DHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + G +A + I+ L+MD ++ + ++ L A A + ++++ + Sbjct: 178 EAAGGPQLALALLPASGQIALLEMDARLHE---DHLERVLEAAAQAARDVHTLLDRVVRQ 234 Query: 544 PRGDIS 549 + S Sbjct: 235 HVREAS 240 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 76/221 (34%), Gaps = 10/221 (4%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-DFFPLTVNYQERTYAAGR 72 + G+ A QA + + +T V G + + + P + +A Sbjct: 23 RKIQARMGVFA-QADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSAT- 80 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVA 130 +R + + + +++ + V+ + Sbjct: 81 FSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGT--YAAC 138 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKES--KLDLVVAGTEAAVLM 188 + A+ A+ +GIP + A G+++ + + + E +L L + + + Sbjct: 139 VNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIAL 198 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 +E +A+ L ED + + + + V ++ +V++ + Sbjct: 199 LEMDAR-LHEDHLERVLEAAAQAARDVHTLLDRVVRQHVRE 238 >UniRef50_B6YSI2 Probable exosome complex exonuclease 1 n=33 Tax=Archaea RepID=ECX1_THEON Length = 249 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 15/242 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + RIDGR+K +R + + GVL GSA G+ + L + Sbjct: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKH-- 66 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 L YN P+SV E G P RR + ++ + + + ++ FP T + Sbjct: 67 -LQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSVEISKVIRGALEPALI-LEMFPRTAI 123 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ +++ + +A + ASLAL DAG+P++ VA A G ++ ++ D+ +E Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEE 179 Query: 486 DHL--GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D+ D+ + ++ I+ LQMD + T++ A+ A + +A+ Sbjct: 180 DNYGEADVPVAIMPLKNDITLLQMDGYL---TRDEFIEAVRLAIKGAKAVYQKQREALKE 236 Query: 544 PR 545 Sbjct: 237 KY 238 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 18/220 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP----GQDFFPLTVNYQERTYA 69 + +E G++ + A + V + V G ++ P D L V Y ++ Sbjct: 27 RPIKMEVGVL-KNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFS 85 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPD 127 R++ P I+++I + P + + + V+ + Sbjct: 86 VEE------RKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTR-- 137 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAA 185 + + AS AL+ +GIP + A G I + VL+ ++E + D+ VA + Sbjct: 138 VAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKND 197 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + +++ + L+ D+ + AV + + V Q E +KE Sbjct: 198 ITLLQMDGY-LTRDEFIEAVRLAIKGAKAVYQKQREALKE 236 >UniRef50_A9TY02 Predicted protein n=3 Tax=Viridiplantae RepID=A9TY02_PHYPA Length = 246 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 14/241 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V R+DGR +R L GV+P GSALF G TQ + + Sbjct: 4 EFVSPEGLRLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNK--- 60 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 Y+ +S GE G RR + + + A + P + + Sbjct: 61 AHQLHDKALVRCEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAI-MTHLLPRSQI 119 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + ++ +++G + A + AS+AL DAG+P++ V A G + N L D+ E Sbjct: 120 DIYVQVLQADGGTRAACINAASMALADAGIPMRDLVVSCAAGYL----NSTPLLDLNYQE 175 Query: 486 DH--LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 D D+ + +S LQMD K+ + E + L A + + + Sbjct: 176 DSGGGPDLVVGYFPKLEKLSLLQMDSKV---SIETFEKVLELATEGAKAVATFTREKLLE 232 Query: 544 P 544 Sbjct: 233 N 233 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 16/207 (7%) Query: 23 MARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYAAGRIPGSFF 78 + A + + M +T V V G + D + Y ++ G Sbjct: 30 VVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALVRCEYSMAAFSTGERRRRGK 89 Query: 79 RREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATV--VSVNPQVNPDIVAMIGASA 136 T ++ +I + + + Q+ V + + + AS Sbjct: 90 -----TDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQADGGTRA--ACINAASM 142 Query: 137 ALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQ 194 AL+ +GIP + + GY+N +L+ E DLVV + +++ +++ Sbjct: 143 ALADAGIPMRDLVVSCAAGYLNSTPLLDLNYQEDSGGGPDLVVGYFPKLEKLSLLQMDSK 202 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINE 221 +S + + E + V E Sbjct: 203 -VSIETFEKVLELATEGAKAVATFTRE 228 >UniRef50_B6K3J3 Exosome complex exonuclease RRP41 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K3J3_SCHJY Length = 243 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 13/237 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + A R DGR + +R D R GV HGS+ G T+ L + + Sbjct: 6 EVISAEGLRQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPS---EPYIK 62 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + NF P+S+ + +R +R + ++ +P + + Sbjct: 63 GKSKQEKAFINVELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAI-QVELYPKSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL-GD 484 + + E +G + + A+LAL+DAG+ + V G+ VL D+ + Sbjct: 122 SISLNVLEDDGGAIATCINAATLALIDAGIAMVDYVCCATAGIY----ETQVLLDLNTNE 177 Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 E + M V G++ ++ L+ + K+ + ++ + AL A HI M++ + Sbjct: 178 ESDISWMTVGVLGTKGKVTYLKQETKL---SLDLFEPALTTAIAGCDHIALQMQKVV 231 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 13/213 (6%) Query: 23 MARQATAAVMVSMDDTAVFVTVVGQKKA----KPGQDFFPLTVNYQERTYAAGRIPGSFF 78 + + A + + +T V V G + K Q+ + V ++ I Sbjct: 32 VEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFINVELNFAPFS--LIDRKKR 89 Query: 79 RR-EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 R + R E I R ++ I+ +++ + V+ + + A+ A Sbjct: 90 HRSDKRIQEQCVAIQRTFEQAIQ--VELYPKSQISISLNVLEDDGG--AIATCINAATLA 145 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKE-SKLDLVVAGTEAAVLMVESEAQLL 196 L +GI + A G Q +L+ +E + S + + V GT+ V ++ E L Sbjct: 146 LIDAGIAMVDYVCCATAGIYETQVLLDLNTNEESDISWMTVGVLGTKGKVTYLKQE-TKL 204 Query: 197 SEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 S D A+ + + ++V+++ K Sbjct: 205 SLDLFEPALTTAIAGCDHIALQMQKVVRQSAKT 237 >UniRef50_Q4SLK0 Chromosome 15 SCAF14556, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4SLK0_TETNG Length = 291 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 90/282 (31%), Gaps = 52/282 (18%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA------- 359 + RIDGR+ +R + R GV + GSA +G T+AL Sbjct: 5 ELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCVCVCV 64 Query: 360 ------RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLA 413 + Y+ +S E R+ K+ A Sbjct: 65 CVCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEA 124 Query: 414 VMPDMDKFPYT-VRVVS-------------------------------EITESNGSSSMA 441 + FP + + + +I +S+G + Sbjct: 125 AV-MTQLFPRSQIDIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGNYSV 183 Query: 442 SVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL--GDMDFKVAGSR 499 V A+LA++DAG+P++ V +G V E L+D+ E+ + + Sbjct: 184 CVNAATLAVIDAGIPMRDYVCACTVGFVDE----TPLADLCYAEESGGVSSLGLALLPRG 239 Query: 500 DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 I+ +QMD ++ + + A A +L + + Sbjct: 240 GQIALVQMDARLHQDNLDALMEAAMTACKGVSKVLDEVVRQH 281 Score = 81.5 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 81/268 (30%), Gaps = 64/268 (23%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK--------------------AKPG 53 + G+ A QA + + +T V G + ++ Sbjct: 23 RKIQARMGVFA-QADGSAYLEQGNTKALAVVYGPHEVCVCVCVCVCVCVCQMRGSRSRAR 81 Query: 54 QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQV 113 D + Y T++ + +R T ++ + + Q+ Sbjct: 82 HDRAVINCQYSMATFS-----TAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQI 136 Query: 114 IATV---------------------------------VSVNPQVNPDIVAMIGASAALSL 140 V + + V + A+ A+ Sbjct: 137 DIYVKVGLVLMFSLLESRLSQAFYLSVMDKDPPCLQILQSDGGN--YSVCVNAATLAVID 194 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELK--ESKLDLVVAGTEAAVLMVESEAQLLSE 198 +GIP + A VG++++ + + E S L L + + +V+ +A+ L + Sbjct: 195 AGIPMRDYVCACTVGFVDETPLADLCYAEESGGVSSLGLALLPRGGQIALVQMDAR-LHQ 253 Query: 199 DQMLGAVVFGHEQQQVVIQNINELVKEA 226 D + + + V + ++E+V++ Sbjct: 254 DNLDALMEAAMTACKGVSKVLDEVVRQH 281 >UniRef50_A9A5C9 Probable exosome complex exonuclease 1 n=3 Tax=Archaea RepID=ECX1_NITMS Length = 244 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 11/244 (4%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 + R DGR D R + ++ G L GS+ G+ + LV RD + Sbjct: 11 MDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVF--GPRDV-HPKHM 67 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRV 427 T Y+ P+SVGE +P RREI ++ K + + ++KFP T V V Sbjct: 68 SDTDTGILRVRYHMEPFSVGERKNP-APSRREIEISKVIKEALEPAV-MLEKFPRTAVDV 125 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 E+ +++G + A++ AS+AL DAG+P++ VA IA G V D ++ + D+ Sbjct: 126 FIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVA--DTVILDVNNEEDQAG 183 Query: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 DM + + I+ LQ+D +T E + + + + ++A+N Sbjct: 184 QADMPIGYMPNLEKITLLQLDG---VLTPEEYKKCIQVGVDGCKLVYELQKKALNDKYFG 240 Query: 548 ISEF 551 Sbjct: 241 NKGD 244 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 18/220 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP----GQDFFPLTVNYQERTYA 69 + ++ G + + A + + D + V V G + P D L V Y ++ Sbjct: 27 RRIMIKAGGL-KNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHMEPFS 85 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPD 127 G R+ PS E I+++I + P + + V V V+ + Sbjct: 86 VGE------RKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRC- 138 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK--ESKLDLVVAGTEAA 185 A+ AS AL+ +GIP + A G + D +L+ +E + ++ + + Sbjct: 139 -AALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPNLEK 197 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + +++ + L E+ + G + ++V + + + + Sbjct: 198 ITLLQLDGVLTPEE-YKKCIQVGVDGCKLVYELQKKALND 236 >UniRef50_Q8SYC8 RE67757p n=23 Tax=Coelomata RepID=Q8SYC8_DROME Length = 246 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 92/247 (37%), Gaps = 17/247 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR +R + + GV + GSA +G T+ L Sbjct: 6 DLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPH-------Q 58 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + Y+ +S E R+ + ++ + A + + +P + + Sbjct: 59 AKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKS-ELYPRSQI 117 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ + +G++ ++ A+LAL+DAG+ + + L K + L+DI E Sbjct: 118 DIYVEVLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSN---IPLTDISQFE 174 Query: 486 DHLGD--MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 + G + + + I+ L+M + + + + A I ++E A+ Sbjct: 175 EVSGGPKLTVAALPTAEKIAFLEMSERFH---IDHLGTVIETAMAGCREIRDILEAAVKE 231 Query: 544 PRGDISE 550 + Sbjct: 232 HLLHMGS 238 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 16/219 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + + G+ Q + + +T V V G +AK Q + Y + T++ Sbjct: 24 RRIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYSQATFS---- 78 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVAM 131 + + R + + + +++ + V+ + VA+ Sbjct: 79 -TAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGAN--YAVAL 135 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKL--DLVVAG--TEAAVL 187 A+ AL +GI N I A L + +E L VA T + Sbjct: 136 NAATLALIDAGICLNEFIVACTASLSKSNIPLT-DISQFEEVSGGPKLTVAALPTAEKIA 194 Query: 188 MVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 +E ++ D + + + + + VKE Sbjct: 195 FLEM-SERFHIDHLGTVIETAMAGCREIRDILEAAVKEH 232 >UniRef50_Q2JKT3 Ribonuclease PH n=22 Tax=Bacteria RepID=RNPH_SYNJB Length = 244 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 30/233 (12%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 V+ E R A +V+V T V T ++ P LT Y+ A Sbjct: 15 RPVSFER-HFTRYAPGSVLVKFGHTHVLCTASVAEEVPPFLQNTGQGWLTAEYRMLPGAT 73 Query: 71 G-RIPGSFFRREGRPSEGETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSVNPQVNPD 127 R P + GR +E I RLI R +R F + + V A V+ + Sbjct: 74 QQRQPREMLKLSGRTAE----IQRLIGRSLRAALDFRKLGSRTITVDADVLQADGGTRT- 128 Query: 128 IVAMIGASAALSLS--------------GIPFNGPIGAARVGYINDQYVLNPTQDELKES 173 A+ G AL + G P + A VG + + +++ +E ++ Sbjct: 129 -AAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGEVLVDLCYEEDSQA 187 Query: 174 KLDLVVAGTEAA-VLMVES--EAQLLSEDQMLGAVVFGHEQQQVVIQNINELV 223 ++D+ + E + ++ EA S Q+L + Q ++Q + + Sbjct: 188 EVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQAQRQAL 240 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 25/246 (10%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R D R +R + GS L G T L TA++ +V L Sbjct: 4 QRPDNRTAAQLRPVSFERHFTRYAPGSVLVKFGHTHVLCTASV----AEEVPPFLQNTGQ 59 Query: 374 DTFLFHYNFPPYSVGETGMVG--SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 Y P + + R RL R + A + T+ V +++ Sbjct: 60 GWLTAEYRMLPGATQQRQPREMLKLSGRTAEIQRLIGRSLRAALDFRKLGSRTITVDADV 119 Query: 432 TESNGSSSMASVCGASLALMDA--------------GVPIKAAVAGIAMGLVKEGDNYVV 477 +++G + A++ G +AL DA G P++ VA +++G+V+ V Sbjct: 120 LQADGGTRTAAITGGYVALHDAITWLYKQGALDPAQGSPLRQQVAALSVGIVQGE----V 175 Query: 478 LSDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 L D+ +ED ++D + + +Q + ++ + L A+ +L Sbjct: 176 LVDLCYEEDSQAEVDMNIVMNEQGSFIEIQGTAEAACFSRPQLLQMLEMAQAGIQELLQA 235 Query: 537 MEQAIN 542 QA+N Sbjct: 236 QRQALN 241 >UniRef50_A2BKC0 Probable exosome complex exonuclease 1 n=32 Tax=Archaea RepID=ECX1_HYPBU Length = 255 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 15/241 (6%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR + +R + + GVL GSAL G T+ + + + Sbjct: 24 IRHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHV---ALPDR 80 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEIT 432 Y+ P+S E +P RRE+ ++ + + AV+ + +P T + V E+ Sbjct: 81 AIIRCRYHMAPFSTAERKTP-APTRREVELSKVIREALEAVVIS-ELYPRTAIDVYMEVL 138 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL--GD 490 +S+G + A++ ASLAL DAG+ ++ VAG+A+G V + V++ DI ED+ D Sbjct: 139 QSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGKV----DGVLVLDIDEIEDNYAEAD 194 Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 M +A S D + LQ++ +T + AL A+ I + ++A+ ++S Sbjct: 195 MPVAMAPSLDKVLLLQLNG---VLTHDEFVKALELARKGIQVIYNLQKEALRKKYVEVSV 251 Query: 551 F 551 Sbjct: 252 E 252 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 89/217 (41%), Gaps = 12/217 (5%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + +E G+++ A + +V T V V G ++A P P + R + A Sbjct: 35 RPIRMEVGVLS-NADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIRCRYHMA--- 90 Query: 74 PGSFFRREG-RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIA--TVVSVNPQVNPDIVA 130 P S R+ P+ E ++++I + + + V+ + A Sbjct: 91 PFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRT--AA 148 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDEL--KESKLDLVVAGTEAAVLM 188 + AS AL+ +GI + VG ++ VL+ + E E+ + + +A + VL+ Sbjct: 149 ITAASLALADAGIAMRDLVAGVAVGKVDGVLVLDIDEIEDNYAEADMPVAMAPSLDKVLL 208 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 ++ L+ D+ + A+ + QV+ E +++ Sbjct: 209 LQLNGV-LTHDEFVKALELARKGIQVIYNLQKEALRK 244 >UniRef50_Q17533 Putative exosome complex exonuclease RRP41 n=4 Tax=root RepID=EXOS4_CAEEL Length = 240 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 11/232 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + + RIDGR IR ++ R G+ GS G T+ L + + Sbjct: 2 NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVY--GPYEGKSSK 59 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + E + Y+ +S E R+ RL ++ +V+ + FP + + Sbjct: 60 RI--EDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVI-LTEAFPRSQL 116 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ + +GS+ A V SLAL DAG+P+K + G+V +V + Sbjct: 117 DIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKP--IVDLTSREET 174 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D L + RD + +++ ++ + + ++ AK + + Sbjct: 175 DLLPRVTLATICGRDEVILVELQNRLH---IDHLSTVMDAAKATCADVYECL 223 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 24/216 (11%) Query: 23 MARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFR 79 + R A + + +T V V G + K +D + Y +A + G + Sbjct: 28 LNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQY-----SATKFSGLERK 82 Query: 80 REGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA 137 R T I+RL+++ + +++ + V+ + + S A Sbjct: 83 NRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLA--ACVNATSLA 140 Query: 138 LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKL----DLVVAGTEAAVLMVESEA 193 L+ +GIP G AA G ++ + +++ T +E+ L L V++VE + Sbjct: 141 LADAGIPMKGIASAATCGVVDGKPIVDLTS--REETDLLPRVTLATICGRDEVILVELQ- 197 Query: 194 QLLSEDQMLGAVVFGHEQQQVVIQ-----NINELVK 224 L D + + V + L Sbjct: 198 NRLHIDHLSTVMDAAKATCADVYECLAVVAQQHLKA 233 >UniRef50_A7RQ94 Predicted protein n=3 Tax=Eumetazoa RepID=A7RQ94_NEMVE Length = 268 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 8/239 (3%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 + R DGR D +R + +R GV+ + GSA T+ + G + + Sbjct: 30 IRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIY-GPREAPRRQEFS 88 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVV 428 M + F P+S E + L + + + V + Sbjct: 89 M---KGRLTCEFKFAPFSCIYRRK-HIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIY 144 Query: 429 SEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL 488 + E++GS+ A + AS+AL AG+ + V+ M + Sbjct: 145 ITVLENDGSALSAGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSAS 204 Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 G + S + +S L + ++ T++ AL+ IL +M+QA+ Sbjct: 205 GHTMVAILPSLNVVSGLVQEGEL---TQDAATKALSSCIEGCARILPIMQQALVKNIKT 260 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 18/225 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF---FPLTVNYQERTYAA 70 + L G+++ QA + + M +T V + G ++A Q+F LT ++ ++ Sbjct: 46 RPMFLRAGVVS-QAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTCEFKFAPFSC 104 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDI 128 +RR+ E + L+ + + P + +V + TV+ + Sbjct: 105 ------IYRRKHIQDAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDGSALS-- 156 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD-LVVAGTEAAVL 187 +I AS AL+++GI + A + ++ +++P + E+ S + ++ Sbjct: 157 AGIICASVALAMAGIEMLDLVSACTMVQSDNHILMDPCEKEIHSSSASGHTMVAILPSLN 216 Query: 188 MVES--EAQLLSEDQMLGAVVFGHEQQQVVIQ-NINELVKEAGKP 229 +V + L++D A+ E ++ LVK Sbjct: 217 VVSGLVQEGELTQDAATKALSSCIEGCARILPIMQQALVKNIKTQ 261 >UniRef50_Q6L223 Ribonuclease PH n=1 Tax=Picrophilus torridus RepID=Q6L223_PICTO Length = 239 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 18/243 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT--ARDAQV 364 + R+DGR + +R + + TGV+ GSA G + +V + + AQ Sbjct: 5 KLINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQN 64 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D YN +SV E G P RR + +L + + + Sbjct: 65 ID------KAIVKARYNMAGFSVEERKRPG-PDRRTMEISKLISEALESAIMVERLPRAE 117 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + V E+ E++ + +AS+ AS+A+ DAG+P+K G N V+ D+ D Sbjct: 118 IDVYIEVLEADAGTRIASLTAASVAVADAGIPMKDLPVGCTA----GKANGKVVLDLSKD 173 Query: 485 EDHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 ED+ GD D +A I LQ+D ++++ ++ A+ GA +I + +A+ Sbjct: 174 EDNYGDADIPMAILPKSGKIILLQLDG---DVSEQELEEAMEMMLGAMKNISRIQREALM 230 Query: 543 APR 545 Sbjct: 231 NRY 233 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 80/217 (36%), Gaps = 17/217 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQK---KAKPGQDFFPLTVNYQERTYAA 70 + + TG++ A + + + V V ++ K D + Y ++ Sbjct: 23 RPIRITTGVV-DNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKARYNMAGFSV 81 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDI 128 R+ P I++LI + + E+ V V+ + I Sbjct: 82 EE------RKRPGPDRRTMEISKLISEALESAIMVERLPRAEIDVYIEVLEADAGTR--I 133 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAV 186 ++ AS A++ +GIP G N + VL+ ++DE D+ +A + Sbjct: 134 ASLTAASVAVADAGIPMKDLPVGCTAGKANGKVVLDLSKDEDNYGDADIPMAILPKSGKI 193 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELV 223 ++++ + +SE ++ A+ + + + E + Sbjct: 194 ILLQLDGD-VSEQELEEAMEMMLGAMKNISRIQREAL 229 >UniRef50_D0NT61 Exosome complex exonuclease RRP41-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NT61_PHYIN Length = 777 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 100/282 (35%), Gaps = 27/282 (9%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR + +R + R G+ R GS+ + +G T+ + Sbjct: 18 EFISVAGLRVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAG 77 Query: 367 ELMG----------------ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG 410 + + T + ++ E S R+++ K+ Sbjct: 78 SVNSGAAAVGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQI 137 Query: 411 VLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLV 469 A + +P + + + ++ ++G AS+ +LAL+DAG+ + V + G + Sbjct: 138 FEACI-QTQLYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVASSAGYL 196 Query: 470 KEGDNYVVLSDILGDED--HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 ++ +L D+ E+ M + ++ LQM+ K++ E+ + + A Sbjct: 197 QQ----TMLCDLNYAEEVARAPQMIIALNPRTQKLNLLQMECKLQ---LELFESLMEVAT 249 Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI 569 I +++ A R + P + + Sbjct: 250 EGCNQIYDLLQNATMDRRSVSTTRGPLALGSSDAQENQEPFD 291 Score = 65.4 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 44/240 (18%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG-------------------- 53 + G+ +R + +T V V G ++ + Sbjct: 36 RRIRTRFGLFSRV-DGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAAAVGTGSGNAA 94 Query: 54 ---QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPE----- 105 Q + + + +A R+ R + + L L ++ +F Sbjct: 95 SNTQPRATVNCEFTQAAFATSE------RKPQRSGDRKKLEMSL---AVKQIFEACIQTQ 145 Query: 106 -GFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLN 164 +++ + V+ + P ++ + AL +GI N + A+ GY+ + + Sbjct: 146 LYPRSQIDIFVQVLHADGGELP--ASINAITLALIDAGIALNDFVVASSAGYLQQTMLCD 203 Query: 165 PTQDELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINEL 222 E +++A + +++ E + L + + E + + Sbjct: 204 LNYAEEVARAPQMIIALNPRTQKLNLLQMECK-LQLELFESLMEVATEGCNQIYDLLQNA 262 >UniRef50_O42872 Exosome complex component ski6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP41_SCHPO Length = 242 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 13/238 (5%) Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 + R DGR D +R R G+ P +GSA G T+ L + V+ Sbjct: 4 FEILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIV--DGPSEP-VI 60 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT- 424 N +S + RR I LA + + + +P + Sbjct: 61 KSKARADRTFVNVEINIASFSTIDVKKRFKSDRR-IQLQCLALQNTFEEIIQTELYPRSQ 119 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG- 483 + V + + +G+ + + +LAL+DAG+P+K V G+V +L D+ Sbjct: 120 ISVYLHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIV----ESDMLLDLNSL 175 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 +E L + V G+ + +Q++ + + ++ +N A HI M+ A+ Sbjct: 176 EESALSWLTVAVLGNIKKVVYMQLETSMH---LDYLESVMNMAIAGSEHIYNTMQSAV 230 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 21/212 (9%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKA----KPGQDFFPLTVNYQERTYAAGRIPGSFFRREGR 83 + + + +T V V G + K D + V +++ ++ + Sbjct: 36 NGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVNVEINIASFS-----TIDVKKRFK 90 Query: 84 PSEGETLIARLIDRPIRPLFPEGFVNEVQVIAT--VVSVNPQVNPDIVAMIGASAALSLS 141 L + + Q+ V+ + V + + AL + Sbjct: 91 SDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGAVMAS--CINATTLALIDA 148 Query: 142 GIPFNGPIGAARVGYINDQYVLNP-TQDELKESKLDLVVAGTEAAVLMVESEAQ---LLS 197 GIP + + G + +L+ + +E S L + V G V+ ++ E Sbjct: 149 GIPVKDFVCCSTAGIVESDMLLDLNSLEESALSWLTVAVLGNIKKVVYMQLETSMHLDYL 208 Query: 198 EDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 E M A+ + + + V+++ KP Sbjct: 209 ESVMNMAIA----GSEHIYNTMQSAVRQSAKP 236 >UniRef50_Q54EU6 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54EU6_DICDI Length = 247 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 99/253 (39%), Gaps = 16/253 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 S + RIDGR + +R ++V G+ R GSA + +G T+ + R+ + Sbjct: 5 SYISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVY--GPREI-SVS 61 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGM--VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 ++ +S E R L K+ + + +P + Sbjct: 62 GKGVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTI-HTHLYPRS 120 Query: 425 -VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 + + ++ +S+G A++ ++LAL+DAG+ +K + + + + + + D+ Sbjct: 121 QINIYLQVLQSDGGLKAAAINASTLALIDAGISMKDFICACSTSCI----DGIAVLDLNN 176 Query: 484 DEDHLGDMDF--KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 E+ G D + G+ +L MD K+ +++ + L + I ++ + Sbjct: 177 IEERSGGPDCLLSIQPQIGGVISLNMDSKV---PQDLFESVLELGEKGCKKIFSILSDYV 233 Query: 542 NAPRGDISEFAPR 554 ++ + Sbjct: 234 KKYCSNLISNQIK 246 Score = 82.3 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 9/218 (4%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + +E G+ R A + +T + V G ++ + ++ Sbjct: 23 RRINVEMGIFKR-ADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVVKCEFSSSSFS 81 Query: 74 PGSFF-RREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIAT--VVSVNPQVNPDIVA 130 +++ + T IA L+ + Q+ V+ + A Sbjct: 82 TTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQSDGG--LKAAA 139 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD--LVVAGTEAAVLM 188 + ++ AL +GI I A I+ VL+ E + D L + V+ Sbjct: 140 INASTLALIDAGISMKDFICACSTSCIDGIAVLDLNNIEERSGGPDCLLSIQPQIGGVIS 199 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 + +++ + +D + G + + + +++ VK+ Sbjct: 200 LNMDSK-VPQDLFESVLELGEKGCKKIFSILSDYVKKY 236 >UniRef50_A8NCK3 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8NCK3_COPC7 Length = 274 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 11/236 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R DGR + +R L + GSAL + G TQ LV+ R+A+ + Sbjct: 20 EILNDAGFRSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSV--HGPREAK-MR 76 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 +S GE +R + K V+ +P + + Sbjct: 77 SHTFHDRANINVEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVV-RTSLYPRSQI 135 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + +I + +G + + G +LAL++AG+P+ V I+ G+ L+ + +E Sbjct: 136 DIYIQILQQDGGTLQTCINGTTLALINAGIPMSDFVCAISGGVHSTSPMLD-LTTL--EE 192 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 + + + V + + M+ ++ E + L A+ A + M++A+ Sbjct: 193 NDVPHVTVAVMPKSKKVVLVTMETRLH---VERFEEVLCLARDAAAVLHKEMKEAV 245 Score = 79.2 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 7/200 (3%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSE 86 A + ++S T V V+V G ++AK F N A R+ + + Sbjct: 50 ADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANINVEVTVAS-FSTGERRKRLKGDK 108 Query: 87 GETLIARLIDRPIRPLFPEGFVNEVQVIATV--VSVNPQVNPDIVAMIGASAALSLSGIP 144 A I P+ Q+ + + + + G + AL +GIP Sbjct: 109 RILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDGGTLQT--CINGTTLALINAGIP 166 Query: 145 FNGPIGAARVGYINDQYVLNP-TQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLG 203 + + A G + +L+ T +E + + V V++V E + L ++ Sbjct: 167 MSDFVCAISGGVHSTSPMLDLTTLEENDVPHVTVAVMPKSKKVVLVTMETR-LHVERFEE 225 Query: 204 AVVFGHEQQQVVIQNINELV 223 + + V+ + + E V Sbjct: 226 VLCLARDAAAVLHKEMKEAV 245 >UniRef50_Q6CA11 YALI0D06776p n=12 Tax=Saccharomycetales RepID=Q6CA11_YARLI Length = 287 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 14/246 (5%) Query: 306 RSRV-LAGEPRIDGREKDMIRGLDVRTGVLP-RTHGSALFTRGETQALVTATLGTARDAQ 363 R + R DGR + IR D + P GS+ G T+ + T R+ Sbjct: 49 RHEIYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTV--DGPREPD 106 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 + N +S +R L ++ + + P Sbjct: 107 NRQNTT--DRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAV-LTKLNPR 163 Query: 424 T-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 T + V + +G A + A LA++DAGVP+ V+ + G+ + + Sbjct: 164 TQIAVNITVIAQDGGLLPACINAACLAMIDAGVPLTDYVSACSSGVYSNNALIDLNTL-- 221 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 +E + + V G D IS L ++ ++ ++ L + I +M+ A+ Sbjct: 222 -EEQDVPFLTIGVIGKSDKISMLTLETQL---PMASLEPVLATSLSGAHAIQDIMDAAVR 277 Query: 543 APRGDI 548 Sbjct: 278 KHGKHR 283 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 12/211 (5%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKA---KPGQDFFPLTVNYQERTYAA-GRIPGSFFRREG 82 A + V T V TV G ++ + D ++VN +++ RI R + Sbjct: 82 ADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVISVNVNVASFSTETRIKR--QRNDK 139 Query: 83 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 142 R +E LI +L++ + L ++ V TV++ + + P + A A+ +G Sbjct: 140 RLAEMNILIRQLLEEAV--LTKLNPRTQIAVNITVIAQDGGLLP--ACINAACLAMIDAG 195 Query: 143 IPFNGPIGAARVGYINDQYVLNP-TQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQM 201 +P + A G ++ +++ T +E L + V G + M+ E L + Sbjct: 196 VPLTDYVSACSSGVYSNNALIDLNTLEEQDVPFLTIGVIGKSDKISMLTLE-TQLPMASL 254 Query: 202 LGAVVFGHEQQQVVIQNINELVKEAGKPRWD 232 + + ++ V++ GK R + Sbjct: 255 EPVLATSLSGAHAIQDIMDAAVRKHGKHRLE 285 >UniRef50_B3T6G7 Putative 3' exoribonuclease family, domain 1 n=1 Tax=uncultured marine microorganism HF4000_APKG2H5 RepID=B3T6G7_9ZZZZ Length = 238 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 15/239 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR+ +R + + GV+P GSA G + + + Sbjct: 8 QMIDENGRRMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKIS 67 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-V 425 + YN P+S + G RR ++ + +V+ ++ +P + + Sbjct: 68 R---QDRAVLDVRYNMAPFSTTDRIRPG-FNRRSREISKVTSDALESVV-LLEMYPRSKI 122 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 RV EI + + + AS+AL AG+P+ V +A G + N VV+ D+ +E Sbjct: 123 RVEIEILCAEAGTRCVGLTAASVALAHAGIPMTDMVVSVASGKI----NGVVICDLNKEE 178 Query: 486 DHL--GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 D+ D+ + + + LQMD ++ + Q A + A L + +M QA+ Sbjct: 179 DNYGEADLPMGMLPNSGDLVFLQMDG---DLSPDEFQQAWDYNMEAGLAVHEIMVQALK 234 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 20/220 (9%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG----QDFFPLTVNYQERTYA 69 +++E G++ A + V V V G +A P QD L V Y ++ Sbjct: 26 RPISIEVGVV-PVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLDVRYNMAPFS 84 Query: 70 AG-RIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNP 126 RI F RR E +++ + L ++++V ++ Sbjct: 85 TTDRIRPGFNRRS-----REI--SKVTSDALESVVLLEMYPRSKIRVEIEILCAEAGTRC 137 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK--ESKLDLVVAGTEA 184 V + AS AL+ +GIP + + G IN + + ++E E+ L + + Sbjct: 138 --VGLTAASVALAHAGIPMTDMVVSVASGKINGVVICDLNKEEDNYGEADLPMGMLPNSG 195 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK 224 ++ ++ + LS D+ A + E V + + + +K Sbjct: 196 DLVFLQMDGD-LSPDEFQQAWDYNMEAGLAVHEIMVQALK 234 >UniRef50_UPI0001698C2E polynucleotide phosphorylase/polyadenylase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698C2E Length = 205 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 98/193 (50%), Positives = 124/193 (64%), Gaps = 5/193 (2%) Query: 149 IGAARVGYINDQYVLNPTQDELK-ESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVF 207 +GA RVGY + +Y+LN L +S LDL+VAGTE AVLMVESEA LSE+ MLGAV+F Sbjct: 9 VGACRVGYKDGEYILNAASTGLSADSDLDLIVAGTEEAVLMVESEANELSEEVMLGAVLF 68 Query: 208 GHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERY 267 GHEQ Q+VI IN L E GK +++ V+EAL A VA AE + DAY I DK ERY Sbjct: 69 GHEQSQIVIDTINALAAEVGKAAGEFESPTVDEALTAAVAEAAEVGMGDAYSIADKLERY 128 Query: 268 AQVDVIKSETIATL----LAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDM 323 A D +K T+ L E+ +E+ L ++K +VR R+L GEPRIDGR+ Sbjct: 129 AAADAVKEATLEKLCSAAEGEEPRWSTDEVKGALEKLKKRIVRGRILDGEPRIDGRDTRT 188 Query: 324 IRGLDVRTGVLPR 336 +R + VRTGVLPR Sbjct: 189 VRPISVRTGVLPR 201 >UniRef50_C2D8L5 tRNA nucleotidyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8L5_9ACTN Length = 272 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 84/233 (36%), Gaps = 27/233 (11%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF---FPLTVNYQE- 65 + TLE + + A + +++ DT V + + + ++ Y Sbjct: 44 AFEARPCTLER-QVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLGWVSAEYAML 102 Query: 66 RTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSVNPQ 123 A R P + R+GR E E RLI R +R + F + + + + V+ + Sbjct: 103 PASAKRRTPREYKGRKGRSMEIE----RLIGRSLRSVVDFSKLGEHTITIDCDVLQADGG 158 Query: 124 VNPDIVAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQYVLNPTQDELKE 172 +++GA AL ++ P G + A +G ++ + +++ E Sbjct: 159 TRT--ASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGELLVDLDYPEDSN 216 Query: 173 SKLDLVVAGTEA-AVLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINEL 222 + +DL V + ++ ++ + LS + + + + Sbjct: 217 ADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQKSV 269 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 22/238 (9%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R GR R + V+ GS L T G+T+ L +AT+ +G Sbjct: 38 RSYGRSAFEARPCTLERQVMKYADGSCLITCGDTRVLCSATVEDTLPTWRKLSHLG---- 93 Query: 375 TFLFHYNFPPYSVGETGMVGSPKR--REIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 Y P S R R + RL R + +V+ +T+ + ++ Sbjct: 94 WVSAEYAMLPASAKRRTPREYKGRKGRSMEIERLIGRSLRSVVDFSKLGEHTITIDCDVL 153 Query: 433 ESNGSSSMASVCGASLALMDAG-----------VPIKAAVAGIAMGLVKEGDNYVVLSDI 481 +++G + AS+ GA +AL DA P+ VA I+MG+V +L D+ Sbjct: 154 QADGGTRTASIVGAWVALHDACRKMVEADKIARCPLTGQVAAISMGIVHGE----LLVDL 209 Query: 482 LGDEDHLGDMDFKVAGSRD-GISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 ED D+D V D G+ +Q + +++ + L+ ++ A + + + Sbjct: 210 DYPEDSNADVDLNVVMRDDGGLVEIQGTGERATLSRHDLNALLDASEPALTKLFALQK 267 >UniRef50_D0DA55 Ribonuclease PH n=2 Tax=Rhodobacteraceae RepID=D0DA55_9RHOB Length = 296 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 29/233 (12%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 TV++ETG + + A + ++ + DT V T +++ P G +T Y + Sbjct: 71 RTVSIETG-ITKHAEGSCLIKVGDTQVICTASLEERVPPFIKGSGLGWVTAEYGMLPRST 129 Query: 71 GRIPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQ--VIATVVSVNPQVN 125 G S RRE G+ I RLI R +R + E Q + V+ + Sbjct: 130 G----SRMRREATSGKQGGRTVEIQRLIGRSLRAGVDRVALGERQITIDCDVIQADGGTR 185 Query: 126 PDIVAMIGASAALSLS-----------GIPFNGPIGAARVGYINDQYVLNPTQDELKES- 173 ++ G AL L+ P P+ A G Q +L+ E E+ Sbjct: 186 C--ASITGGWVALRLAVNKLMKAGDVKTDPLVSPVAAVSCGIYAGQPILDLDYPEDSEAG 243 Query: 174 -KLDLVVAGTEAAV-LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK 224 + ++ G + + + +E S QM + + +++ V Sbjct: 244 VDGNFILRGDGQLIEVQMSAEGATFSRAQMSELMDLAEKGVAQLVEAQKAAVA 296 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 98/262 (37%), Gaps = 30/262 (11%) Query: 303 NVVRSRVLAGE------PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATL 356 +R ++ R GR +R + + TG+ GS L G+TQ + TA+L Sbjct: 43 RGLRGTIIPDATEKGAPMRPSGRHLSEMRTVSIETGITKHAEGSCLIKVGDTQVICTASL 102 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVL 412 + +V + G Y P S G G R + RL R + Sbjct: 103 ----EERVPPFIKGSGLGWVTAEYGMLPRSTGSRMRREATSGKQGGRTVEIQRLIGRSLR 158 Query: 413 AVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLA-------LMDAG----VPIKAAV 461 A + + + + ++ +++G + AS+ G +A LM AG P+ + V Sbjct: 159 AGVDRVALGERQITIDCDVIQADGGTRCASITGGWVALRLAVNKLMKAGDVKTDPLVSPV 218 Query: 462 AGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK-VAGSRDGISALQMDIKIEGITKEIMQ 520 A ++ G+ + D+ ED +D + + +QM + ++ M Sbjct: 219 AAVSCGIYAG----QPILDLDYPEDSEAGVDGNFILRGDGQLIEVQMSAEGATFSRAQMS 274 Query: 521 VALNQAKGARLHILGVMEQAIN 542 ++ A+ ++ + A+ Sbjct: 275 ELMDLAEKGVAQLVEAQKAAVA 296 >UniRef50_C1DI48 Ribonuclease PH n=157 Tax=Bacteria RepID=RNPH_AZOVD Length = 239 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 23/231 (9%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 + + T R A +V+V DT V TV + GQ LT Y A Sbjct: 13 RPIRI-TRNYTRHAEGSVLVEFGDTRVICTVSAEAGVPRFLKGQGKGWLTAEYGMLPRAT 71 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFP--EGFVNEVQVIATVVSVNPQVNPDI 128 G R GR I RLI R +R + N + V V+ + Sbjct: 72 GERMAREASR-GRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDCDVIQADGGTRT-- 128 Query: 129 VAMIGASAAL-----------SLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 177 ++ GA AL +L G P + A VG + +L+ E +++ DL Sbjct: 129 ASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGEPILDLDYPEDSDAETDL 188 Query: 178 VVAGTEA-AVLMVES--EAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 V T+A + V+ E + +++ + + + + + ++ + Sbjct: 189 NVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQRAVLAD 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 24/246 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R GR +R + + GS L G+T+ + T + +A V L G+ Sbjct: 2 KRPSGRAPHQLRPIRITRNYTRHAEGSVLVEFGDTRVICTVS----AEAGVPRFLKGQGK 57 Query: 374 DTFLFHYNFPPYSVGET----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P + GE G R + RL R + A + T+ V Sbjct: 58 GWLTAEYGMLPRATGERMAREASRGRQGGRTLEIQRLIGRSLRAALDMSKLGENTLYVDC 117 Query: 430 EITESNGSSSMASVCGASLALMDA-----------GVPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ GA +AL+DA G P+K VA +++G+ + + Sbjct: 118 DVIQADGGTRTASITGAMVALVDALAVLKKRGALKGDPLKQMVAAVSVGIYQGE----PI 173 Query: 479 SDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED + D V + G +Q + E E + L A + + Sbjct: 174 LDLDYPEDSDAETDLNVVMTDAGGFIEVQGTAEGEPFQPEELNAMLALATQGIRELFELQ 233 Query: 538 EQAINA 543 + Sbjct: 234 RAVLAD 239 >UniRef50_C9J2E0 Putative uncharacterized protein PNPT1 n=5 Tax=Amniota RepID=C9J2E0_HUMAN Length = 179 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 7 RKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQER 66 G + + +G +AR A + +V DTAV VT V + K P Q F PL V+Y+++ Sbjct: 47 VAVDLGNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQ-FMPLVVDYRQK 105 Query: 67 TYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 AAGRIP ++ RRE S+ E L +R+IDR IRPLFP G+ + QV+ +++V+ P Sbjct: 106 AAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEP 165 Query: 127 DIVAMIGA 134 D++A+ G Sbjct: 166 DVLAINGG 173 Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 20/131 (15%) Query: 325 RGLDVRTGVLPR-THGSALFTRGETQALVT-ATLGTARDAQVLDELMGERTDTFLFHYNF 382 R L++ +G L R GSA+ G+T +VT + +Q + + Y Sbjct: 54 RKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMP---------LVVDYRQ 104 Query: 383 PPYSVGET-----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGS 437 + G +EI R+ R + + P Y +V+ + +G Sbjct: 105 KAAAAGRIPTNYLRREIGTSDKEILTSRIIDRSIRPLFPAGYF--YDTQVLCNLLAVDGV 162 Query: 438 SSM--ASVCGA 446 + ++ G Sbjct: 163 NEPDVLAINGG 173 >UniRef50_C4R4E4 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome n=1 Tax=Pichia pastoris GS115 RepID=C4R4E4_PICPG Length = 246 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 87/247 (35%), Gaps = 15/247 (6%) Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPR-THGSALFTRGETQALVTATLGTARDAQVLDEL 368 R+DGR + +R R P GSA G T+ + L + Sbjct: 5 SPEGLRVDGRRWNELRRFYCRINTHPIVADGSAYVEAGNTKIVCL--LNGPHEPTRSQMN 62 Query: 369 MGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV-RV 427 + + H + P+S E V RR + K V+ + +P T+ V Sbjct: 63 TQKGSLDIKLHVS--PFSTTERRKVTRNDRRIQELSTILKNTFEQVVI-LKNYPRTIIEV 119 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG-DED 486 + +G A +LAL+DAG+ + ++ ++ G+ + +L D+ +E Sbjct: 120 NVRVLAQDGGLLAACCNAITLALVDAGIALYDYISAVSAGVF----DNQILLDLNRLEEQ 175 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 L + V G +S + + ++ ++ + A + M+ + Sbjct: 176 DLSSVTIGVVGKTKKLSLVLSETRL---PQDRLAKVFEVAVNGCHQLKDQMDAQVAKKGR 232 Query: 547 DISEFAP 553 + + Sbjct: 233 EKAITEE 239 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 72/210 (34%), Gaps = 14/210 (6%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKAKPGQ---DFFPLTVNYQERTYAAGRIPGSFFRREGR 83 A + V +T + + G + Q L + ++ + R+ R Sbjct: 33 ADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSLDIKLHVSPFS-----TTERRKVTR 87 Query: 84 PSEGETLIARLIDRPIRPLFPE--GFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLS 141 ++ ++ + ++V V++ + + AL + Sbjct: 88 NDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLAQDGG--LLAACCNAITLALVDA 145 Query: 142 GIPFNGPIGAARVGYINDQYVLNPTQ-DELKESKLDLVVAGTEAAVLMVESEAQLLSEDQ 200 GI I A G ++Q +L+ + +E S + + V G + +V SE + L +D+ Sbjct: 146 GIALYDYISAVSAGVFDNQILLDLNRLEEQDLSSVTIGVVGKTKKLSLVLSETR-LPQDR 204 Query: 201 MLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 + + ++ V + G+ + Sbjct: 205 LAKVFEVAVNGCHQLKDQMDAQVAKKGREK 234 >UniRef50_D2EG59 3' exoribonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG59_9EURY Length = 235 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 16/241 (6%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R D R+ D +R ++ TG++P GSA F G T+A+ + ++++ Sbjct: 5 RFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKV---NKG 61 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 + Y+ P+SV + G RR+I ++ + + + V V IT++ Sbjct: 62 IIVCKYDMLPFSVPDRARPGM-DRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQA 120 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL-----G 489 + + AS+ AS+A DAG+P++ VA +A G + + + D+ +E+ Sbjct: 121 DAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDS----ICLDLTKEEEDFHEGGAT 176 Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 D+ + S++ I LQ+D K+ T+E ++ + K + I + + A+ + S Sbjct: 177 DVPIALLPSKNEIVLLQLDGKV---TREELKKVIEMGKKGAMEIYELEKAALKRRFLNES 233 Query: 550 E 550 + Sbjct: 234 K 234 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 22/237 (9%) Query: 1 MLNPIVRKFQYGQ-HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ----D 55 M K ++ + + ETG++ A + + +T V G ++ KP + Sbjct: 1 MYEERFDKRKFDELRPMEAETGII-PNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVN 59 Query: 56 FFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPI-RPL-FPEGFVNEVQV 113 + Y ++ R + I+++I + R + E V V Sbjct: 60 KGIIVCKYDMLPFSV------PDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNV 113 Query: 114 IATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK-- 171 + + ++ AS A + +G+P + A G I D L+ T++E Sbjct: 114 RIYITQADAGTRC--ASLTAASMACADAGLPMRDLVAAVAAGKIGDSICLDLTKEEEDFH 171 Query: 172 ---ESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + + + + ++ +++++ + + ++ +++ + G + + + +K Sbjct: 172 EGGATDVPIALLPSKNEIVLLQLDGK-VTREELKKVIEMGKKGAMEIYELEKAALKR 227 >UniRef50_UPI000038E13A exosome complex exonuclease Rrp41 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E13A Length = 240 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 18/244 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGT--ARDAQV 364 + R+DGR + +R + ++TGV+ R GSA G + +V + + AQ Sbjct: 6 KLMREDGLRLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQN 65 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +D YN YSV E G P RR + ++ + + + Sbjct: 66 ID------RAIVKARYNMSGYSVEERKRPG-PDRRTMEISKVVSEALSSAIVLEKLPRAE 118 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 + V ++ E++ + +AS+ +S+A+ DAGVP++ V G + ++ D+ D Sbjct: 119 IDVFIQVLEADAGTRIASLTASSVAVADAGVPMRDLVVGCTA----GKADGKIVLDLSKD 174 Query: 485 EDHL--GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 ED+ D+ + + LQ+D +T+E A + A I + A+ Sbjct: 175 EDNFGQADIPMAILPRTGKVVLLQLDG---DVTEEEFNEATSMMMDAMPRISELQRNALM 231 Query: 543 APRG 546 + Sbjct: 232 SKYS 235 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 83/217 (38%), Gaps = 17/217 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQK---KAKPGQDFFPLTVNYQERTYAA 70 + ++TG++ R A + + + V V ++ K D + Y Y+ Sbjct: 24 RPIKIQTGVVER-ADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVKARYNMSGYSV 82 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDI 128 R+ P I++++ + + + E+ V V+ + I Sbjct: 83 EE------RKRPGPDRRTMEISKVVSEALSSAIVLEKLPRAEIDVFIQVLEADAGTR--I 134 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELK--ESKLDLVVAGTEAAV 186 ++ +S A++ +G+P + G + + VL+ ++DE ++ + + + V Sbjct: 135 ASLTASSVAVADAGVPMRDLVVGCTAGKADGKIVLDLSKDEDNFGQADIPMAILPRTGKV 194 Query: 187 LMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELV 223 ++++ + ++E++ A + + + + Sbjct: 195 VLLQLDGD-VTEEEFNEATSMMMDAMPRISELQRNAL 230 >UniRef50_B2UNC2 Ribonuclease PH n=3 Tax=Verrucomicrobia RepID=B2UNC2_AKKM8 Length = 270 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 31/240 (12%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ-----DFFPLTVNYQERTY 68 ++ ETG +A ATA+V+V+ T V V ++ + LT Y Y Sbjct: 22 RPISFETG-IAPNATASVLVTFGRTKVICAVTIEEDVPRWMKVQRVEGGWLTAEYSMLPY 80 Query: 69 AAGRIPGSFFRRE---GRPSEGETLIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQ 123 + RR+ G+ + I RLI R +R G + V V+ + Sbjct: 81 ST----LDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCDVLQADGG 136 Query: 124 VNPDIVAMIGASAALSL-----------SGIPFNGPIGAARVGYINDQYVLNPTQDELKE 172 ++ GAS AL++ + P + A VG + + +L+ E K+ Sbjct: 137 TRT--ASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEALLDLCYVEDKD 194 Query: 173 SKLDLVVAGTEAA-VLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 +++D+ + T+ + V+ + + DQM + G + + + + +++ E +P Sbjct: 195 AEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQRQVIAEEDRP 254 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 22/247 (8%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R D R D +R + TG+ P S L T G T+ + T+ D ++ Sbjct: 12 RQDKRLVDQLRPISFETGIAPNATASVLVTFGRTKVICAVTI--EEDVPRWMKVQRVEGG 69 Query: 375 TFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 Y+ PYS + G R RL R + A + T+ V + Sbjct: 70 WLTAEYSMLPYSTLDRKRRDITAGKLDGRSSEIQRLIGRSLRAAVDLGKIGQRTIWVDCD 129 Query: 431 ITESNGSSSMASVCGASLALMD-----------AGVPIKAAVAGIAMGLVKEGDNYVVLS 479 + +++G + AS+ GAS+AL A P+K V+ +++G+++ L Sbjct: 130 VLQADGGTRTASITGASVALAIAVNKLVAEGKLAESPMKRLVSAVSVGILEGEA----LL 185 Query: 480 DILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 D+ ED ++D + + +Q + T + M L + I + Sbjct: 186 DLCYVEDKDAEVDMNLVMTDQGEFVEVQGSGEEAVFTADQMNRMLELGRKGLEEIAELQR 245 Query: 539 QAINAPR 545 Q I Sbjct: 246 QVIAEED 252 >UniRef50_UPI0001925525 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925525 Length = 258 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 11/232 (4%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR ++ IR + ++ G + + +GS+ +T+ + G + + Sbjct: 34 QRQDGRGENEIRPMYLKAGTIHQANGSSYVETCDTKLICAVY-GPRDNPKRH---QFSSK 89 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 F P+S E V + + + + + + + I E Sbjct: 90 GNIFCEVTFAPFSWHER--VSNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILE 147 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD--M 491 +G+ + AS+AL DAG+ + V E V D G+E L + Sbjct: 148 YSGNCLSYAFIAASIALADAGIEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRV 207 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 S + IS L M + + L I M++ I Sbjct: 208 VIAYMPSLNKISYLSMQGEETIDDSMQN---VITCIEGCLRIYKYMKECIMN 256 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 16/218 (7%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 + L+ G + QA + V DT + V G + F + E T+A Sbjct: 43 EIRPMYLKAGTI-HQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFA-- 99 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDIV 129 P S+ R + I + ++ + ++ + Sbjct: 100 --PFSWHERVSNQDSLSKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGN--CLSY 155 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYV----LNPTQDELKESKLDLVVA--GTE 183 A I AS AL+ +GI + + + N+ + ++P+ +E+ K +V+A + Sbjct: 156 AFIAASIALADAGIEMLDLVTSCESAFSNETSIQRVCVDPSGEEVSLCKGRVVIAYMPSL 215 Query: 184 AAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINE 221 + + + + +D M + E + + + E Sbjct: 216 NKISYLSMQGEETIDDSMQNVI-TCIEGCLRIYKYMKE 252 >UniRef50_Q2P6N2 Ribonuclease PH n=933 Tax=cellular organisms RepID=RNPH_XANOM Length = 241 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 37/237 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 V +E R A +V+VS DT V T + + G+ +T Y Sbjct: 15 RPVRIER-AFTRHAEGSVLVSFGDTHVLCTASVENRVPNFLRGKGEGWVTAEY------- 66 Query: 71 GRIPGSFFRRE------GRPSEGETLIARLIDRPIRPLFPEGFVNEVQV--IATVVSVNP 122 G +P S R G+ I RLI R +R + E + V+ + Sbjct: 67 GMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCDVLQADG 126 Query: 123 QVNPDIVAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQYVLNPTQDELK 171 A+ GA AL+ + P G + A VG + VL+ E Sbjct: 127 GTRT--AAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGEPVLDLDYPEDS 184 Query: 172 ESKLDLVVAGTEAAVLMVE----SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK 224 + D+ V + +E +E D++ + + + + Sbjct: 185 DCDTDMNVVMNDGGGF-IELQGTAEGHAFRRDELNALLALAEKGMGDLFALQRAALA 240 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 24/244 (9%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R GR D +R + + GS L + G+T L TA++ + +V + L G+ Sbjct: 5 RPSGRTADQLRPVRIERAFTRHAEGSVLVSFGDTHVLCTASV----ENRVPNFLRGKGEG 60 Query: 375 TFLFHYNFPPYSVGETG----MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 Y P S G R + RL R + A + T+ + + Sbjct: 61 WVTAEYGMLPRSTHTRSDREAARGKQGGRTLEIQRLIGRALRACVDRNALGERTITLDCD 120 Query: 431 ITESNGSSSMASVCGASLALMDA-----------GVPIKAAVAGIAMGLVKEGDNYVVLS 479 + +++G + A++ GA +AL DA P+ AVA +++G+ + + Sbjct: 121 VLQADGGTRTAAITGAYVALADAVNLLLKRGEIKKHPLIGAVAAVSVGIYRGE----PVL 176 Query: 480 DILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 D+ ED D D V + G LQ + ++ + L A+ + + Sbjct: 177 DLDYPEDSDCDTDMNVVMNDGGGFIELQGTAEGHAFRRDELNALLALAEKGMGDLFALQR 236 Query: 539 QAIN 542 A+ Sbjct: 237 AALA 240 >UniRef50_A9VBQ1 Predicted protein n=2 Tax=Fungi/Metazoa group RepID=A9VBQ1_MONBE Length = 1336 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 81/212 (38%), Gaps = 7/212 (3%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 VL R++G D +R + + GV + GSA +G T+ L DA+ Sbjct: 25 RLVLLPARRVEG--DDELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDAR--- 79 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 T + + +S + R+ G R + +V+ T+ Sbjct: 80 GPNASGHLTVSCEFIYASFSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTIN 139 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + ++ +++G ++ ASLA+MDAGVP+K + G+++ V+ ++ Sbjct: 140 LNVQVLQADGGVLATAINAASLAMMDAGVPMKDFLCACNAGVLEGVA--VLDTNHSEALA 197 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEI 518 D+ V + I Q + + + Sbjct: 198 RGPDLTVAVMPRTNTIVLNQDEKRQTNFELTM 229 Score = 86.9 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 70/213 (32%), Gaps = 13/213 (6%) Query: 1 MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ--KKAKPGQDFFP 58 +L + +V + G+ QA + V +T V + G A+ Sbjct: 28 LLPARRVEGDDELRSVKAKLGVF-EQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGH 86 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGF--VNEVQVIAT 116 LTV+ + + R R I R + + + + + Sbjct: 87 LTVSCEFIYAS---FSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQ 143 Query: 117 VVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKE--SK 174 V+ + V A+ AS A+ +G+P + A G + VL+ E Sbjct: 144 VLQADGGVLAT--AINAASLAMMDAGVPMKDFLCACNAGVLEGVAVLDTNHSEALARGPD 201 Query: 175 LDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVF 207 L + V +++ + E + + ++ A+ Sbjct: 202 LTVAVMPRTNTIVLNQDEKRQ-TNFELTMALKL 233 >UniRef50_B7KB81 Ribonuclease PH n=7 Tax=Bacteria RepID=RNPH_CYAP7 Length = 242 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 33/235 (14%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 + ET +R +V+ +T V T Q LT Y+ Sbjct: 15 RPILFETN-YSRFRVGSVLAHCGETRVLCTATIQPNVPKFLLNSGKGWLTAEYRM----- 68 Query: 71 GRIPGSFFRREGRP----SEGETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSVNPQV 124 +PG+ R+ R S I RLI R +R F + + V+ + Sbjct: 69 --LPGATPERQSRELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDVLQADAGT 126 Query: 125 NPDIVAMIGASAALSLS-----------GIPFNGPIGAARVGYINDQYVLNPTQDELKES 173 A+ G AL L+ P P+ A VG I + L+ E + Sbjct: 127 RT--TAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGEPFLDLNYAEDTAA 184 Query: 174 KLDLVVAGTEA-AVLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 ++D V T ++ V+ A+ S Q+ + Q ++ + Sbjct: 185 EVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQNAINS 239 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 22/247 (8%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R D R+ D +R + T GS L GET+ L TAT+ V L+ Sbjct: 4 TRPDSRQPDQLRPILFETNYSRFRVGSVLAHCGETRVLCTATIQP----NVPKFLLNSGK 59 Query: 374 DTFLFHYNFPPYSVGETGMV--GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 Y P + E R RL R + A + T+ + +++ Sbjct: 60 GWLTAEYRMLPGATPERQSRELMQLSGRTQEIQRLIGRSLRACLDFERLGERTIIIDTDV 119 Query: 432 TESNGSSSMASVCGASLALMDAG-----------VPIKAAVAGIAMGLVKEGDNYVVLSD 480 +++ + ++ G +AL A P+K VA +++GL++ D Sbjct: 120 LQADAGTRTTAITGGYIALGLAIKKLLEVGELQESPLKLPVAAVSVGLIEGE----PFLD 175 Query: 481 ILGDEDHLGDMDFKVAGSRD-GISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 + ED ++DF V + + + +Q + ++ + L+ A+ +L + Sbjct: 176 LNYAEDTAAEVDFNVVMTGNLDLIEVQGTAESGSFSRLQLNQLLDLAQTGIQELLVAQQN 235 Query: 540 AINAPRG 546 AIN+ Sbjct: 236 AINSTYQ 242 >UniRef50_Q83HF6 Ribonuclease PH n=17 Tax=Bacteria RepID=RNPH_TROW8 Length = 247 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 24/250 (9%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 ++ R + R D IR + + G GSAL G T+ L AT V L Sbjct: 6 IICSVLRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATF----QRGVPPFL 61 Query: 369 MGERTDTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 G+R+ Y P S E G R RL R + A++ T Sbjct: 62 RGQRSGWITAEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENT 121 Query: 425 VRVVSEITESNGSSSMASVCGASLALMDAGV-----------PIKAAVAGIAMGLVKEGD 473 + + ++ +++G + A++ G+ +AL DA V P+ +V+ +++GLV + Sbjct: 122 IILDCDVLQADGGTRTAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGD-- 179 Query: 474 NYVVLSDILGDEDHLGDMDFKVAGS-RDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 + D+ ED D + + + +Q + + + + AK Sbjct: 180 --QIFLDLDYSEDSNAQADINLVFTGSGKLVEIQGTAEKSPFSYGQFEQMMELAKTGCQA 237 Query: 533 ILGVMEQAIN 542 + + +++ Sbjct: 238 LKEIQAASLD 247 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 37/234 (15%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTY 68 V + G A + +++ +T V Q+ P GQ +T Y Sbjct: 20 EIRPVKIIRGW-NIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWITAEYAM--- 75 Query: 69 AAGRIPGSFFRR------EGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSV 120 +P S R +G+ S I+RLI R +R + + E +I V+ Sbjct: 76 ----LPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQA 131 Query: 121 NPQVNPDIVAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQYVLNPTQDE 169 + A+ G+ AL LS P + A VG + DQ L+ E Sbjct: 132 DGGTRT--AAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSE 189 Query: 170 LK--ESKLDLVVAGTEAAVLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNI 219 ++ ++LV G+ ++ ++ A+ S Q + Q + + Sbjct: 190 DSNAQADINLVFTGSG-KLVEIQGTAEKSPFSYGQFEQMMELAKTGCQALKEIQ 242 >UniRef50_B9MQJ8 Ribonuclease PH n=58 Tax=Bacteria RepID=RNPH_ANATD Length = 258 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 24/247 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R D R + IR + + + GS L G T+ +VTAT+ D +V G Sbjct: 1 MRQDQRAYNEIRPIKITRNFIKYAEGSCLIEMGNTKVIVTATI----DDKVPPFKKGSGE 56 Query: 374 DTFLFHYNFPPYSVGETGMVG----SPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y+ P + + + R RL R + A + + + Sbjct: 57 GWITAEYSMLPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDC 116 Query: 430 EITESNGSSSMASVCGASLALMDAG-----------VPIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + AS+ G +A+ DA P+ VA +++G+ + + Sbjct: 117 DVIQADGGTRTASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVE----M 172 Query: 479 SDILGDEDHLGDMDFK-VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ +ED +D V + +Q + + E Q L K I+ V Sbjct: 173 LDLCFEEDSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQ 232 Query: 538 EQAINAP 544 ++ + Sbjct: 233 KEVLGQD 239 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 82/237 (34%), Gaps = 35/237 (14%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTY 68 + + + + A + ++ M +T V VT K P G +T Y Sbjct: 10 EIRPIKITRNFI-KYAEGSCLIEMGNTKVIVTATIDDKVPPFKKGSGEGWITAEYSM--- 65 Query: 69 AAGRIPGSFFRR------EGRPSEGETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSV 120 +P + +R + R S I RLI R +R F + + V+ Sbjct: 66 ----LPRATQQRNVRDINKLRLSGRSHEIQRLIGRALRAGINFKALGERVIIIDCDVIQA 121 Query: 121 NPQVNPDIVAMIGASAALSLS-----------GIPFNGPIGAARVGYINDQYVLNPTQDE 169 + ++ G A+ + P + A VG + +L+ +E Sbjct: 122 DGGTRT--ASITGGFIAMFDACKKLYDEKIIENFPVTDFVAAVSVGICDGVEMLDLCFEE 179 Query: 170 LKESKLDLVVAGTEAA-VLMVES--EAQLLSEDQMLGAVVFGHEQQQVVIQNINELV 223 ++ +D+ + + + ++ E S +Q + G + Q +I+ E++ Sbjct: 180 DSKAAVDMNLVMNDKGEFIEIQGTAEGAPFSWEQFQKLLELGKQGIQKIIEVQKEVL 236 >UniRef50_UPI00015B5B6C PREDICTED: similar to ENSANGP00000009222 n=2 Tax=Apocrita RepID=UPI00015B5B6C Length = 270 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 2/161 (1%) Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 G R DGR +R + +R GV + GSA +G+T+ L T + + Sbjct: 8 SQGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANAL 67 Query: 370 GERTDTFLFHYNFPPYS--VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV 427 Y+ +S GE R+ + + + A++ + + Sbjct: 68 KAVKGIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDI 127 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 E+ + +GS +V A+LAL+DAG+PIK G ++ + Sbjct: 128 FVEVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTV 168 Score = 78.4 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 15/154 (9%) Query: 10 QYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTV-------N 62 + L G+ QA + + T + TV G + + + L Sbjct: 19 PLELRRIRLRMGVFG-QADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVKGIVNCQ 77 Query: 63 YQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSV 120 Y ++ G +++ R ++ + + + +++ + V+ V Sbjct: 78 YSTAVFSFG---AGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDIFVEVLQV 134 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARV 154 + VA+ A+ AL +GIP V Sbjct: 135 DGSDFC--VAVNAATLALIDAGIPIKDYAIGCSV 166 >UniRef50_B6AK41 3' exoribonuclease family protein, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK41_9CRYT Length = 250 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 93/251 (37%), Gaps = 11/251 (4%) Query: 305 VRSRVLAGEPRIDGREKDMIRGLDVRT--GVLPRTHGSALFTRGETQALVTATLGTARDA 362 + + RIDGR + IR + + G + S + +G+T+ + + Sbjct: 7 FNEILNSEGFRIDGRRFNEIRRISCKISNGTSNLSDSSVYYEQGQTKLITSICGPIP--- 63 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 L + ++ P+ + G R + + R + + ++ Sbjct: 64 --LLNSSSQSGIQLHCNFRMSPFCTPDRRKRGKNDRFCTENSLIITRTFESAISEIYV-K 120 Query: 423 YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 + + + E++G A++ SLAL +AG+ +K V +GL Y ++ Sbjct: 121 SQIIININVLEADGGVRSAAINATSLALANAGIGMKDLVISSTIGLYGRIPLYDIVQA-- 178 Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 + M F + + + I+ + M++ + + ++I+ + L + A HI ++ + Sbjct: 179 EFDVLKTIMSFAIYSTDENIAPITMELNTK-VDEDILNLLLEHSAAACKHISKILRNILR 237 Query: 543 APRGDISEFAP 553 Sbjct: 238 QHAIRRYYTFS 248 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 75/210 (35%), Gaps = 13/210 (6%) Query: 24 ARQATAAVMVSMDDTAVFVTVVGQKKA--KPGQDFFPLTVNYQERTYAAGRIPGSFFRRE 81 + + ++V T + ++ G Q L N++ + P R+ Sbjct: 38 SNLSDSSVYYEQGQTKLITSICGPIPLLNSSSQSGIQLHCNFRMSPFC---TPD--RRKR 92 Query: 82 GRPSEGETLIARLIDRPIRPLFPEGF-VNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 G+ T + +I R E + +++ + V+ + V A+ S AL+ Sbjct: 93 GKNDRFCTENSLIITRTFESAISEIYVKSQIIININVLEADGGVRS--AAINATSLALAN 150 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQ-LLS 197 +GI + ++ +G + + Q E K + A T+ + + E + Sbjct: 151 AGIGMKDLVISSTIGLYGRIPLYDIVQAEFDVLKTIMSFAIYSTDENIAPITMELNTKVD 210 Query: 198 EDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 ED + + + + + + ++++ Sbjct: 211 EDILNLLLEHSAAACKHISKILRNILRQHA 240 >UniRef50_A1KID0 Ribonuclease PH n=18 Tax=Bacteria RepID=RNPH_MYCBP Length = 259 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 26/232 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQ---DFFPLTVNYQERTYAA 70 V + G A +V++ T V T + + LT Y A Sbjct: 14 RPVIITRGFTENPA-GSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSAT 72 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNE--VQVIATVVSVNPQVNPDI 128 R GR S I+RLI R +R + E + + V+ + Sbjct: 73 HSRSDRESVR-GRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRT-- 129 Query: 129 VAMIGASAALS-----------LSG-IPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 A+ GA AL+ LS P + I A VG ++ + ++ +E +++D Sbjct: 130 AAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVD 189 Query: 177 LVVAGTEAAVLMVE----SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVK 224 + V T+ +VE E + + + + + + Sbjct: 190 MNVVATDTG-TLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALA 240 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 25/257 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR +R + + G GS L G T+ L TA++ Sbjct: 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRK----ATGL 58 Query: 374 DTFLFHYNFPPYSVGETG----MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P + + G R RL R + A + T+ + Sbjct: 59 GWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDC 118 Query: 430 EITESNGSSSMASVCGASLALMDA------------GVPIKAAVAGIAMGLVKEGDNYVV 477 ++ +++G + A++ GA +AL DA P+ A+A +++G+V + + Sbjct: 119 DVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVV----DGRI 174 Query: 478 LSDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 D+ +ED ++D V + + +Q + + + L+ A GA + Sbjct: 175 RVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAA 234 Query: 537 MEQAINAPRGDISEFAP 553 A+ P + P Sbjct: 235 QRDALALPYPGVLPQGP 251 >UniRef50_B5XC68 Exosome complex exonuclease MTR3 n=2 Tax=Euteleostei RepID=B5XC68_SALSA Length = 277 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 22/256 (8%) Query: 300 IEKNVVRSRVLAGEPRIDGR--EKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLG 357 + K + + + R+DGR + +R + VR G++ + GSA G T+ + Sbjct: 21 LCKTAAKKSTASNDARVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVY-- 78 Query: 358 TARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPD 417 R+ + DE ++ + F P+S E G E + + + Sbjct: 79 GPRETERKDE-TDMKSGRLITDMRFAPFSCRERGS-WIQGSDEKDLSLMLLESLRPGV-C 135 Query: 418 MDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 + K+P + + V + E++G+ +V AS+AL DAG+ + V G ++ +EG Y+ Sbjct: 136 LQKYPRSQIEVNVMVLENDGAVLAHAVTCASMALADAGIEMYDLVLGCSIR--QEGATYL 193 Query: 477 VLSDI---------LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 + G ++LG + S + IS LQ D ++ T + + Sbjct: 194 IDPTFLEENGCNLASGSRENLGSLTVAFLPSLNQISGLQSDGEMGEDT---LTGGVRTCI 250 Query: 528 GARLHILGVMEQAINA 543 + V++QA++ Sbjct: 251 EGCFKLYPVIQQALSK 266 Score = 80.0 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 91/248 (36%), Gaps = 33/248 (13%) Query: 6 VRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTV 61 ++ Q +V + G+++ QA + + +T + V G ++ + L Sbjct: 40 RQRGQVDVRSVFVRCGLIS-QAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGRLIT 98 Query: 62 NYQERTYAAGRIPGSFFRREGR---PSEGETLIARLIDRPIRP--LFPEGFVNEVQVIAT 116 + + ++ RE E ++ ++ +RP + ++++V Sbjct: 99 DMRFAPFSC---------RERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVM 149 Query: 117 VVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKL- 175 V+ + V A+ AS AL+ +GI + + Y+++PT E L Sbjct: 150 VLENDGAVLAH--AVTCASMALADAGIEMYDLVLGCSIRQEGATYLIDPTFLEENGCNLA 207 Query: 176 --------DLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 L VA + + ++S+ + ED + G V E + I + + + Sbjct: 208 SGSRENLGSLTVAFLPSLNQISGLQSDG-EMGEDTLTGGVRTCIEGCFKLYPVIQQALSK 266 Query: 226 AGKPRWDW 233 A + + Sbjct: 267 AVRRKAPP 274 >UniRef50_B9MZ65 Predicted protein n=6 Tax=Magnoliophyta RepID=B9MZ65_POPTR Length = 263 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 13/237 (5%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR R RTG + GSA G T+ +V+ R+++ +M Sbjct: 40 TRSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVF--GPRESK--KAMMYSDK 95 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 + ++ ++ V + + + + TV V + + E Sbjct: 96 GKLNCNVSYTTFATT----VHGQGSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLE 151 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 S GS + ASLAL DAG+ + VAG+++ + G N ++ + + G + Sbjct: 152 SGGSDLPVVISCASLALADAGIMMYDLVAGVSVSCL--GRNLIIDPTLEEESFQDGSLMI 209 Query: 494 KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 S I+ L + + + + A+ A + ++ + + Sbjct: 210 TCMPSHYEITQLTITGE---WSTANLNEAMQLCLDACSKLAKILRSCLKEAASASKD 263 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 16/219 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAA 70 + TG + A + +T V V+V G +++K D L N T+A Sbjct: 51 RSAFFRTGAV-NSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNCNVSYTTFAT 109 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 +E + L + + V V A V+ P + Sbjct: 110 TVHGQGSDNKEFSTMLHKALEGAV-------MLETFPKTTVDVFALVLESGGSDLPVV-- 160 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG--TEAAVLM 188 + AS AL+ +GI + V + +++PT +E L++ + + Sbjct: 161 ISCASLALADAGIMMYDLVAGVSVSCLGRNLIIDPTLEEESFQDGSLMITCMPSHYEITQ 220 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 + S + A+ + + + + +KEA Sbjct: 221 LTITG-EWSTANLNEAMQLCLDACSKLAKILRSCLKEAA 258 >UniRef50_D1CFI4 Ribonuclease PH n=3 Tax=Bacteria RepID=D1CFI4_THET1 Length = 245 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 94/248 (37%), Gaps = 21/248 (8%) Query: 309 VLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDEL 368 +L R+DGR+ + +R + L GSA+ G T+ L A++ V L Sbjct: 1 MLQDVIRVDGRKPNELRPHSIEIYPLAFPPGSAIIQCGVTKVLCAASI----QEGVPKFL 56 Query: 369 MGERTDTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 G Y+ P S G + R RL R + A + T Sbjct: 57 EGTGQGWLTAEYSMLPASTQTRTPRESHTGRLQGRTQEIQRLIGRSLRAAVKLDQIGEIT 116 Query: 425 VRVVSEITESNGSSSMASVCGAS----LALM----DAGVPIKAAVAGIAMGLVKEGDNYV 476 + V ++ +++G + AS+ G LAL D + + VA +++G+V N Sbjct: 117 IIVDCDVLQADGGTRTASITGGYVATVLALRKIFPDTYRDLVSPVAAVSVGIV----NGT 172 Query: 477 VLSDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 + D+ ED D D V + +Q + ++E + L+ A ++ Sbjct: 173 PMLDLNYAEDSTADTDLNVVKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELME 232 Query: 536 VMEQAINA 543 + +++ Sbjct: 233 SQSKVLSS 240 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 22/233 (9%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 ++E +A + ++ T V Q+ G LT Y + Sbjct: 17 RPHSIEIYPLA-FPPGSAIIQCGVTKVLCAASIQEGVPKFLEGTGQGWLTAEYSMLPAST 75 Query: 71 G-RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSVNPQVNPD 127 R P GR I RLI R +R + E+ +I V+ + Sbjct: 76 QTRTPRESHT--GRLQGRTQEIQRLIGRSLRAAVKLDQIGEITIIVDCDVLQADGGTRT- 132 Query: 128 IVAMIGASAA--LSLSGI-P-----FNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV 179 ++ G A L+L I P P+ A VG +N +L+ E + DL V Sbjct: 133 -ASITGGYVATVLALRKIFPDTYRDLVSPVAAVSVGIVNGTPMLDLNYAEDSTADTDLNV 191 Query: 180 AGTE-AAVLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 + +++ A+ S +++ + + ++++ ++++ P Sbjct: 192 VKNHLGDYIEIQATAERVSFSREELDAMLSLADKGIAELMESQSKVLSSLDLP 244 >UniRef50_A2RVK7 At4g27490 n=9 Tax=Magnoliophyta RepID=A2RVK7_ARATH Length = 256 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR R ++TG + GSA G T+ +V+ R+++ ++ Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVF--GPRESK--KAMVYSDVG 89 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 + ++ ++ + + + + V+ TV V + + ES Sbjct: 90 RLNCNVSYTNFAS----PTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLES 145 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 494 GS + ASLAL DAG+ + + +++ + + +++ G ED G Sbjct: 146 GGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCED--GSFMMT 203 Query: 495 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 SR I+ L + + T + A+ A + +M + Sbjct: 204 CMPSRYEITQLTITGE---WTTPNINEAMQLCLDASSKLGEIMRDCLKQS 250 Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 16/217 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAA 70 L+TG ++ A+ + +T V V+V G +++K D L N +A+ Sbjct: 44 RPALLQTGAVSS-ASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFAS 102 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 + +E + L +I + V V A V+ + ++ Sbjct: 103 PTLGQGTDHKEYSSMLHKALEG-VI------MMETFPKTTVDVFALVLES-GGSDLSVL- 153 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDEL--KESKLDLVVAGTEAAVLM 188 + AS AL+ +GI I A V I +++P +E ++ + + + Sbjct: 154 ISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQ 213 Query: 189 VESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 + + + A+ + + + + + +K+ Sbjct: 214 LTITG-EWTTPNINEAMQLCLDASSKLGEIMRDCLKQ 249 >UniRef50_B7GAV6 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GAV6_PHATR Length = 274 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 22/261 (8%) Query: 300 IEKNVVRSRVLA-GEPRIDGREKDMIRGLDVRTGVLP--RTHGSALFTRGETQALVTATL 356 + ++ R+ +LA R DGR+ IR + V+ L GSAL G T L T Sbjct: 1 MSSSIRRTDLLALSNLRNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVR- 59 Query: 357 GTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSP--KRREIGHGRLAKRGVLAV 414 G + DE P+S V +P RR I + KR + A Sbjct: 60 GPVDCLRRADE--NPDQAVLDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAA 117 Query: 415 MPDMDKFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL----V 469 + + +P + + +V + +G A++ A+LALMDAG+P+K V + GL Sbjct: 118 I-LLHLYPKSRIELVVSVLADDGGRLCAAINAATLALMDAGIPMKDFVCACSAGLPGTSA 176 Query: 470 KEGDNYVVLSDILGDEDHLGD------MDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 + + L D+ E+ M + R+ + Q + ++ + + ++ L Sbjct: 177 TPDSHALTLVDLNRQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNL--DTLERVL 234 Query: 524 NQAKGARLHILGVMEQAINAP 544 + A + +++ A+ Sbjct: 235 DAATEGCRAVFDILQAAVREH 255 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 89/247 (36%), Gaps = 35/247 (14%) Query: 3 NPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ----KKAKPGQDFFP 58 +R+ + +++ T + + +V M T V TV G ++A D Sbjct: 23 PHEIRRMRVQMSPLSVST------ISGSALVEMGLTVVLATVRGPVDCLRRADENPDQAV 76 Query: 59 LTVNYQERTYAAGRIPGSFFRR--EGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVI 114 L V Q ++ S RR + + ++ R + L + ++++ Sbjct: 77 LDVTVQSAPFS-----SSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELV 131 Query: 115 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--------YVLNPT 166 +V++ + A+ A+ AL +GIP + A G +++ Sbjct: 132 VSVLADDGGRLC--AAINAATLALMDAGIPMKDFVCACSAGLPGTSATPDSHALTLVDLN 189 Query: 167 QDELK----ESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 + E ++ + VA +++ + EA+L + D + + E + V + Sbjct: 190 RQEESSTGGQAATHMPVALLPQRNTLVLAQCEARLPNLDTLERVLDAATEGCRAVFDILQ 249 Query: 221 ELVKEAG 227 V+E Sbjct: 250 AAVREHA 256 >UniRef50_C4Q0C5 Ribonuclease pH related n=1 Tax=Schistosoma mansoni RepID=C4Q0C5_SCHMA Length = 258 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%) Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 + R+DGR + IR +D + G + G +G T+ + + A + Sbjct: 3 EIFYNGRRVDGRRPNEIRRVDCQFGS-GYSDGIVFLHQGNTKVIASVVGP---HAPRVKG 58 Query: 368 LMGERTDTFLFHYNFPPYSV--GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 T + PP++ GE + S R + V+ + Sbjct: 59 DGTPDGATITCQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQI 118 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ +S+GS +V +LAL DAG+ + V+ +GL V +D+ E Sbjct: 119 DIFLEVIQSDGSEFACAVNATTLALTDAGIEMDCLVSAATVGLWGSH----VFADLCRFE 174 Query: 486 DH--LGDMDFKVAGSRDGISALQMDIKIEGI 514 ++ + + + +S + + +I Sbjct: 175 ENPRISQLTVVCLPNVHLLSGVNTEEQIGQW 205 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 19/154 (12%) Query: 26 QATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP----LTVNYQERTYAAGRIPGSFFRRE 81 + V + +T V +VVG + D P +T + + +A S RR+ Sbjct: 30 YSDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATITCQFTKPPFA----STSGERRK 85 Query: 82 GRPSEGETLIARLIDRPIRPLF------PEGFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 + A I +F + ++++ + V+ + A+ + Sbjct: 86 LSSKDRS---ANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQSDGSE--FACAVNATT 140 Query: 136 AALSLSGIPFNGPIGAARVGYINDQYVLNPTQDE 169 AL+ +GI + + AA VG + + E Sbjct: 141 LALTDAGIEMDCLVSAATVGLWGSHVFADLCRFE 174 >UniRef50_A8EY33 Ribonuclease PH n=14 Tax=Rickettsieae RepID=RNPH_RICCK Length = 239 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 89/236 (37%), Gaps = 37/236 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 ++LE + A + ++ + T V + + P GQ+ +T Y Sbjct: 12 RPISLELSPLV-NAEGSCLIKIGKTHVICSATCETTVPPFLRGQNQGWVTAEY------- 63 Query: 71 GRIPGSF---FRRE---GRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSVNP 122 G +P S +RE G+ I RLI R +R + + E Q+I V++ + Sbjct: 64 GMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDCDVINADG 123 Query: 123 QVNPDIVAMIGASAALSLS-------GI----PFNGPIGAARVGYINDQYVLNPTQDELK 171 A+ G+ AL L+ I P I A G + +L+ E Sbjct: 124 GTRT--AAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGETILDLDYLEDS 181 Query: 172 ES--KLDLVVAGTEAAVLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELV 223 ++ ++ V AG + V+ A+ SE+Q L + + + N+++ Sbjct: 182 DAEVDINFVFAGNGNLI-EVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQNQVL 236 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 24/244 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R GR+ + +R + + L GS L G+T + +AT + V L G+ Sbjct: 1 MRQSGRKSNQLRPISLELSPLVNAEGSCLIKIGKTHVICSATC----ETTVPPFLRGQNQ 56 Query: 374 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P S + G R RL R + V+ + + Sbjct: 57 GWVTAEYGMLPSSTSQRIKREAVLGKQGGRTQEIQRLIGRAMRCVIDLKKLGERQIIIDC 116 Query: 430 EITESNGSSSMASVCGASLALMDAGV-----------PIKAAVAGIAMGLVKEGDNYVVL 478 ++ ++G + A++ G+ +AL A P+ + +A I+ G+ K + Sbjct: 117 DVINADGGTRTAAITGSYIALHLAIRLLMKKSILKVNPLISQIAAISCGIYKGE----TI 172 Query: 479 SDILGDEDHLGDMDFKVAGSRD-GISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED ++D + + + +Q + + ++E L AK + + Sbjct: 173 LDLDYLEDSDAEVDINFVFAGNGNLIEVQGTAEKKPFSEEQFLAMLKLAKVGAAELFKLQ 232 Query: 538 EQAI 541 Q + Sbjct: 233 NQVL 236 >UniRef50_Q6P0I8 Exosome complex exonuclease MTR3 n=5 Tax=Euteleostomi RepID=EXOS6_DANRE Length = 271 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 23/247 (9%) Query: 319 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLF 378 R +R + R G++ + GSA G T+ + + ++ + DE +T + Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVY--GPKETERRDE-TDMKTGRLVC 93 Query: 379 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGS 437 + P+S + G E + + + ++P + + V + E++GS Sbjct: 94 DFRLAPFSCVKRGAWIQGSE-ERDLSATLMESLRPGV-CLHRYPRSQIDVNVMVLENDGS 151 Query: 438 SSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD------- 490 +V AS+AL DAG+ + V G + L D E+ Sbjct: 152 VLAHAVTCASMALADAGIEMYDIVLGCTL----RQSGNACLVDPSYAEECGSWQEGYGDN 207 Query: 491 ---MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 + + + + +S L D ++ T + A+ + V++QA+ Sbjct: 208 QGCVTLALLPNLNQVSGLNADGEMREDT---LTEAMRTCMDGCHKLYPVVQQALTRAVKK 264 Query: 548 ISEFAPR 554 + + Sbjct: 265 KAPPPEK 271 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 82/238 (34%), Gaps = 28/238 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYA 69 V G+++ QA + + +T + +V G K+ + L +++ Sbjct: 43 RPVFARCGLVS-QAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR----- 96 Query: 70 AGRIPGSFFRREG-RPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNP 126 P S +R E ++ + +RP +++ V V+ + V Sbjct: 97 --LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLA 154 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDE----------LKESKLD 176 A+ AS AL+ +GI + + + +++P+ E + + Sbjct: 155 H--AVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVT 212 Query: 177 LVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ 234 L + V + ++ + ED + A+ + + + + + A K + Sbjct: 213 LALLPNLNQVSGLNADG-EMREDTLTEAMRTCMDGCHKLYPVVQQALTRAVKKKAPPP 269 >UniRef50_C7DI01 3' exoribonuclease n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI01_9EURY Length = 246 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 8/243 (3%) Query: 308 RVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDE 367 +++ R+DGR+ + +R L + G+L +GSA G + L + Sbjct: 9 QLIVDGKRLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRH--- 65 Query: 368 LMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV 427 L Y+ P+S P RR I ++ K V+ + + + Sbjct: 66 LADTNKAIIKCRYSMAPFSSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEI 125 Query: 428 VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 EI +S+G + A + A++AL +AG+ +K V ++ G + E + V+ +++ D Sbjct: 126 FIEILQSDGGTRAAGITAAAVALANAGIHVKDMVYAVSAGRIDE--HVVIDVNMIEDNYS 183 Query: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 DM ++ + + LQMD G TKE A+ + I V A+ + Sbjct: 184 DADMPVSISPKDNSVLLLQMDG---GFTKEQFGEAMKMILESGKVISKVQRDALKRLYEN 240 Query: 548 ISE 550 + Sbjct: 241 AEK 243 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 84/221 (38%), Gaps = 17/221 (7%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP----GQDFFPLTVNYQERTYA 69 + +E G++A A + + + V V G K+A P + + Y ++ Sbjct: 26 RPLKIEAGILA-NANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIKCRYSMAPFS 84 Query: 70 AGRIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPD 127 R G P+ I+++ + E +E+++ ++ + Sbjct: 85 ----SMGDHGRSG-PNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQSDGGTRAA 139 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVV--AGTEAA 185 + + + +GI + A G I++ V++ E S D+ V + + + Sbjct: 140 GITAAAVAL--ANAGIHVKDMVYAVSAGRIDEHVVIDVNMIEDNYSDADMPVSISPKDNS 197 Query: 186 VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 VL+++ + +++Q A+ E +V+ + + +K Sbjct: 198 VLLLQMDGG-FTKEQFGEAMKMILESGKVISKVQRDALKRL 237 >UniRef50_B1I4W9 Ribonuclease PH n=67 Tax=Bacteria RepID=RNPH_DESAP Length = 261 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 24/254 (9%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R+DGR +R + + GSAL G+T+ + TA++ D +V L G Sbjct: 2 IRVDGRAPAQMRPVYITRHYNKYAEGSALIEVGDTRVICTASI----DNRVPTFLKGAGK 57 Query: 374 DTFLFHYNFPPYSVGETGMV----GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 + P + G G+ G P R + RL R + AV+ TV + Sbjct: 58 GWVTAEFGMLPRATGVRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDC 117 Query: 430 EITESNGSSSMASVCGASLALMDA-------GV----PIKAAVAGIAMGLVKEGDNYVVL 478 ++ +++G + A++ G +AL+DA GV P+ VA ++GL + + Sbjct: 118 DVIQADGGTRTAAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEA----V 173 Query: 479 SDILGDEDHLGDMDFKVAGS-RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED ++DF V + +Q + + + L+ A ++ Sbjct: 174 LDLCFAEDSAAEVDFNVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQ 233 Query: 538 EQAINAPRGDISEF 551 + + +I + Sbjct: 234 RAVLGSLAEEIGKR 247 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 27/238 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 V + T + A + ++ + DT V T + G +T + A Sbjct: 13 RPVYI-TRHYNKYAEGSALIEVGDTRVICTASIDNRVPTFLKGAGKGWVTAEFGMLPRAT 71 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVI--ATVVSVNPQVNPDI 128 G + G +G P I RLI R +R + + E VI V+ + Sbjct: 72 G-VRGIRESVKGHPGGRSLEIQRLIGRSLRAVVDLPALGERTVILDCDVIQADGGTRT-- 128 Query: 129 VAMIGASAALSLS-----------GIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL 177 A+ G AL + +P + A VG + VL+ E +++D Sbjct: 129 AAITGGFVALVDAMQTLVTEGVTPRLPVLDYVAATSVGLFEGEAVLDLCFAEDSAAEVDF 188 Query: 178 VVAGTEAA-VLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINE----LVKEAGK 228 V T + V+ E + + + +++ L +E GK Sbjct: 189 NVVMTGTGRFVEVQGTGEGTTFERADVDRLLDLAVVGIRSLVEQQRAVLGSLAEEIGK 246 >UniRef50_C9KNG5 tRNA nucleotidyltransferase n=2 Tax=Firmicutes RepID=C9KNG5_9FIRM Length = 248 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 93/241 (38%), Gaps = 21/241 (8%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R D R D +R ++ GS L G T+ + A++ + +V L G Sbjct: 3 RPDRRTADALRPYEMHRHFQKYPAGSVLIEMGNTKVICAASI----EDRVPFFLRGTGEG 58 Query: 375 TFLFHYNFPPYSVGET----GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 Y+ P + + G R RL R + +V+ T+ + + Sbjct: 59 WIAAEYSLLPSATETRTQREAVRGKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCD 118 Query: 431 ITESNGSSSMASVCGASLALMDAG---------VPIKAAVAGIAMGLVKEGDNYVVLSDI 481 + +++G + AS+ GA +AL++A P+K ++ I++G+ EG V + D+ Sbjct: 119 VIQADGGTRTASITGAFVALVEACASFYEKGKIFPVKDFLSAISVGVSHEG---VPILDL 175 Query: 482 LGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 +ED +D V + +Q + T E + L + ++ + Sbjct: 176 CYEEDSRAIVDMNVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDV 235 Query: 541 I 541 + Sbjct: 236 L 236 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 77/229 (33%), Gaps = 24/229 (10%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 + + +V++ M +T V + + G + Y A Sbjct: 13 RPYEMHR-HFQKYPAGSVLIEMGNTKVICAASIEDRVPFFLRGTGEGWIAAEYSLLPSAT 71 Query: 71 -GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNE--VQVIATVVSVNPQVNPD 127 R R G+ S I RLI R +R + + E + + V+ + Sbjct: 72 ETRTQREAVR--GKQSGRTQEIERLIGRSLRSVVDTKALGERTIMIDCDVIQADGGTRT- 128 Query: 128 IVAMIGASAALSLSGI---------PFNGPIGAARVGYI-NDQYVLNPTQDELKESKLDL 177 ++ GA AL + P + A VG +L+ +E + +D+ Sbjct: 129 -ASITGAFVALVEACASFYEKGKIFPVKDFLSAISVGVSHEGVPILDLCYEEDSRAIVDM 187 Query: 178 VVAGTEAA-VLMVE--SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELV 223 V T + V+ E + + +++ + G + + +I +++ Sbjct: 188 NVVMTGVGRFVEVQGTGEGRPFTHEELGELLALGEKGCRELISYEKDVL 236 >UniRef50_Q5BZN7 SJCHGC06185 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BZN7_SCHJA Length = 251 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 12/200 (6%) Query: 313 EPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R+DGR + +R + + G + G +G T+ + + A Sbjct: 1 GRRVDGRRPNELRRVHCQFGS-GNSDGIVFLHQGNTKVIASVVGP---HAPRTKGDGNPD 56 Query: 373 TDTFLFHYNFPPYSV--GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 T + + PP++ GE V S R + V+ + + E Sbjct: 57 GATIICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLE 116 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH--L 488 + +S+GS +V +LAL DAG+ + V+ +GL V +D+ E++ L Sbjct: 117 VIQSDGSEFACAVNATTLALTDAGIEMHYLVSAATVGLWG----SRVFADLCRFEENPRL 172 Query: 489 GDMDFKVAGSRDGISALQMD 508 + +S + Sbjct: 173 SQLTVVCLPDIHQLSEFSTE 192 Score = 62.7 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 13/166 (7%) Query: 26 QATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP----LTVNYQERTYAAGRIPGSFFRRE 81 + V + +T V +VVG + D P + + + +A S RR+ Sbjct: 23 NSDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATIICQFTKPPFA----STSGERRK 78 Query: 82 GRPSEGET-LIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 138 ++ + I+ + + ++++ + V+ + A+ + AL Sbjct: 79 VASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSDGSE--FACAVNATTLAL 136 Query: 139 SLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA 184 + +GI + + AA VG + + + E L V Sbjct: 137 TDAGIEMHYLVSAATVGLWGSRVFADLCRFEENPRLSQLTVVCLPD 182 >UniRef50_D0NP71 Exosome complex exonuclease MTR3-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NP71_PHYIN Length = 252 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 10/225 (4%) Query: 315 RIDGREK--DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGER 372 R+D D +R ++ G + GSA G T+ L G D + E + Sbjct: 26 RLDKSRTSSDEMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVY-GPRTDTRARREF--SK 82 Query: 373 TDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEIT 432 + + P++ T E+ + + + + + V I Sbjct: 83 DGQLVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTIL 142 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMD 492 E +G A++ ASLAL DA V + V + G+V V+ ++ G + Sbjct: 143 EDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGS--VVLDPSREEEQRGDGKLA 200 Query: 493 FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 S ++ + KI +Q A++ A ++ + Sbjct: 201 LAYMPSMGRVTYMLQAGKIH---HTQLQEAVDLCTDACTGVIRSL 242 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 18/199 (9%) Query: 27 ATAAVMVSMDDTAVFVTVVGQK-KAKPGQDFFP---LTVNYQERTYAAGRIPGSFFRREG 82 A + V + T V V G + + ++F L + + +A RRE Sbjct: 50 AAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLT-----RRER 104 Query: 83 RPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 E ++ +++ + P + + + V T++ + V A+ AS AL+ Sbjct: 105 GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLA--AALNCASLALAD 162 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELKESK--LDLVVAGTEAAVL-MVESEAQLLS 197 + + + A+ G +N VL+P+++E + L L + V M+++ + Sbjct: 163 AAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAG--KIH 220 Query: 198 EDQMLGAVVFGHEQQQVVI 216 Q+ AV + VI Sbjct: 221 HTQLQEAVDLCTDACTGVI 239 >UniRef50_B0ERA1 Exosome complex exonuclease RRP41, putative n=2 Tax=Entamoeba RepID=B0ERA1_ENTDI Length = 238 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 91/250 (36%), Gaps = 17/250 (6%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 + R+DGR +R ++ L + GSA G T G + Sbjct: 2 EYISPEGYRLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVV-FGPLEGRRR-- 58 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 + Y+ ++ + R I L K+ V+ + Sbjct: 59 ---NREGAELMVSYSQATFATRKR-REQMHDRTMIETAELLKQMYEQVIITKLLPETMID 114 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + +I + +GS + A + +LAL+DAG+P+ V+ G + + ++ D+ DE+ Sbjct: 115 LRVQIMQDDGSVTAAVINACTLALIDAGIPMIDIVSAAEGGYI----DGKMVVDMNKDEE 170 Query: 487 HLGD---MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ++G + + ++ LQ + K+ + + L+ + I M++ I Sbjct: 171 NVGTVFNVHTAIMQKSGAVALLQTEGKM---PLQRLGDLLSIVEEGAKTIGIEMKKRIRE 227 Query: 544 PRGDISEFAP 553 ++ + Sbjct: 228 YGIEVLSYQT 237 Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 12/225 (5%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQ-KKAKPGQDFFPLTVNYQERTYAAGR 72 +E + + + V M +T V V G + + ++ L V+Y + T+A + Sbjct: 20 RKCEMEINFLNT-SDGSARVRMGNTIVEAVVFGPLEGRRRNREGAELMVSYSQATFATRK 78 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 RRE A L+ + + + E + V + + + Sbjct: 79 ------RREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDGSVTAAVIN 132 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK---LDLVVAGTEAAVLMV 189 + AL +GIP + AA GYI+ + V++ +DE + + AV ++ Sbjct: 133 ACTLALIDAGIPMIDIVSAAEGGYIDGKMVVDMNKDEENVGTVFNVHTAIMQKSGAVALL 192 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQ 234 ++E + + ++ + E + + + + ++E G +Q Sbjct: 193 QTEGK-MPLQRLGDLLSIVEEGAKTIGIEMKKRIREYGIEVLSYQ 236 >UniRef50_C1CZJ0 Putative tRNA nucleotidyltransferase (Phosphate-dependent exonuclease, Ribonuclease PH, RNase PH) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CZJ0_DEIDV Length = 249 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 90/247 (36%), Gaps = 32/247 (12%) Query: 2 LNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFP 58 P + V+++ G + A + + M T + TV + K P G+ Sbjct: 9 FPPREGRGLLEPRPVSVKRG-VNPHAPGSAHLIMGRTEILATVTLEDKPAPHMRGKKEGW 67 Query: 59 LTVNYQERTYAAGRIPGSFFRREGRPSE----GETLIARLIDRPIRPLFP-EGFVNEV-Q 112 LT Y +P + R+ R I RL+ R +R + F N+ Sbjct: 68 LTAEYSM-------LPRATNDRQARERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIY 120 Query: 113 VIATVVSVNPQVNPDIVAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQY 161 V V+ + + +++ AAL LS P +GA VG + ++ Sbjct: 121 VDCDVLVADGGTR--VASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEEV 178 Query: 162 VLNPTQDELKESKLDLVVAGTEAA-VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 ++ E K ++ DL V T+ V+ V+ A+ + H Q + ++ Sbjct: 179 RVDLDYAEDKVARADLNVVATDTGLVIEVQGGAEEGP-ISLAEYSQLLHTGVQAIHGVMD 237 Query: 221 ELVKEAG 227 EL +E Sbjct: 238 ELGRELA 244 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 22/243 (9%) Query: 318 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFL 377 GR R + V+ GV P GSA G T+ L T TL + + + G++ Sbjct: 14 GRGLLEPRPVSVKRGVNPHAPGSAHLIMGRTEILATVTL----EDKPAPHMRGKKEGWLT 69 Query: 378 FHYNFPPYSVGET--GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 435 Y+ P + + R RL R + A + T+ V ++ ++ Sbjct: 70 AEYSMLPRATNDRQARERNLQNGRRHEIQRLLGRALRASVDLKYFRNQTIYVDCDVLVAD 129 Query: 436 GSSSMASVCGASLALMD-------AGV----PIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 G + +AS+ AL D +G P+ V I++GLV E V D+ Sbjct: 130 GGTRVASILAGHAALHDFCDRLINSGQLSEWPLTHKVGAISVGLVGEE----VRVDLDYA 185 Query: 485 EDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED + D V + + +Q + I+ L+ A ++ + + + Sbjct: 186 EDKVARADLNVVATDTGLVIEVQGGAEEGPISLAEYSQLLHTGVQAIHGVMDELGRELAV 245 Query: 544 PRG 546 +G Sbjct: 246 IQG 248 >UniRef50_Q74NF6 NEQ248 n=1 Tax=Nanoarchaeum equitans RepID=Q74NF6_NANEQ Length = 233 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 30/247 (12%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR+ + IR +++ GV+ + GSA G T A+ L R+ L Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQSNLK------- 53 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 Y P++ E +G RREI + + + + + T+ EI + Sbjct: 54 ----VSYRMLPFAGEERKGLGLT-RREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIK 108 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG------------DNYVVLSDI 481 ++ + +A++ SLAL AG+P+KA V IA+G V E D+ ++ ++ Sbjct: 109 ADAGTRVAAINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKEL 168 Query: 482 LGDEDHLGD---MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 ++ G+ +D +A ++ I+ LQ+D I ++ + A+ K ++ + + Sbjct: 169 PQYYEYYGEGKAVDIPMAMYKNKITLLQLDG---SIDRKSLLEAIKLGKDGIKRMIDLQK 225 Query: 539 QAINAPR 545 AI Sbjct: 226 IAIEDYY 232 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 95/236 (40%), Gaps = 35/236 (14%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAG 71 ++ G++++ A + +T V KPG++ L V+Y+ +A Sbjct: 10 EIRDTEMKIGVISK-ADGSAYCRTGNTIAIAAVYL----KPGREQSNLKVSYRMLPFA-- 62 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQVNPDIV 129 R+ + E ++ +I + + P +F E ++ ++ + + Sbjct: 63 ----GEERKGLGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAGTR--VA 116 Query: 130 AMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT-QDELKESKL------------- 175 A+ S AL+ +GIP +GA VG + ++ VL+ Q+E +S++ Sbjct: 117 AINALSLALAHAGIPMKALVGAIAVGKVGEKIVLDLNKQEEDYDSEIIKKELPQYYEYYG 176 Query: 176 -----DLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 D+ +A + + +++ + + +L A+ G + + +I +++ Sbjct: 177 EGKAVDIPMAMYKNKITLLQLDGS-IDRKSLLEAIKLGKDGIKRMIDLQKIAIEDY 231 >UniRef50_UPI0001C36465 polynucleotide phosphorylase/polyadenylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36465 Length = 192 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 74/153 (48%), Positives = 100/153 (65%) Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 ++AP+I I I+P KI DV+GK G VI + EETG I+I DDG+V + TD + A Sbjct: 1 GKYAPKIEQITIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCGTDKDMIARA 60 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 I I+ I +IE G V GKV RI++FGAFV + K+G+VHIS+++DKRVEKV D + + Sbjct: 61 IEIIKSIVTDIEPGAVMKGKVVRIMNFGAFVELAPNKDGMVHISKLSDKRVEKVEDAVNI 120 Query: 669 GQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAA 701 G EV V+VLEVD+ GRI LS+K + Sbjct: 121 GDEVTVRVLEVDKMGRINLSMKPGDMDPNVDVS 153 >UniRef50_UPI000180CDA2 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Ciona intestinalis RepID=UPI000180CDA2 Length = 276 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 107/279 (38%), Gaps = 21/279 (7%) Query: 286 ETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTR 345 D + ++ IEK + + E R DGR R + ++ GV+ + GSA F Sbjct: 9 PAPDISYNAKLFTEIEKLSL---LDDEEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEM 65 Query: 346 GETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGR 405 +T+ + + +D ++ +E + PYS + G P ++ Sbjct: 66 NKTKVICSVY--GPKDIEMREEFQIN-KGKLKCELKYAPYSSPKHG-DHIPGASDVEKSD 121 Query: 406 LAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 + + + + + V + E +GS A++ AS+AL+DAG+ + + + Sbjct: 122 ILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMPAAITAASVALVDAGIEMYDVITASS 181 Query: 466 MGLVKEGDNYVVLS---------DILGDEDHLGDMDF-KVAGSRDGISALQMDIKIEGIT 515 + + D +++ ++ D M + S + +S++ +E Sbjct: 182 I-RIAGQDTFIIDPTSSEEFSPLNLEKSNDLNQGMVMVALLPSINQVSSVVSSGHLE--- 237 Query: 516 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 554 ++Q A+ + + ++ ++ + + ++ Sbjct: 238 CNVLQEAIRSCRYSAQNLHSIVRKCLVNSLKKSNQNNSH 276 Score = 76.9 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 31/220 (14%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF----FPLTVNYQERTYA 69 V L+ G++ QA + M+ T V +V G K + ++F L + Y+ Sbjct: 45 RDVFLQCGVIT-QAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKGKLKCELKYAPYS 103 Query: 70 AGR----IPGSFFRREGRPSEGETLIARLIDRPIRP--LFPEGFVNEVQVIATVVSVNPQ 123 + + IPG+ + + ++ I +++ V V+ + Sbjct: 104 SPKHGDHIPGA----------SDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLEDDGS 153 Query: 124 VNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ--YVLNPTQDELKESKLDLVVAG 181 V P A+ AS AL +GI I A+ + I Q ++++PT E + S L+L + Sbjct: 154 VMP--AAITAASVALVDAGIEMYDVITASSI-RIAGQDTFIIDPTSSE-EFSPLNLEKSN 209 Query: 182 T-EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNIN 220 ++MV A L S +Q+ V GH + V+ + I Sbjct: 210 DLNQGMVMV---ALLPSINQVSSVVSSGHLECNVLQEAIR 246 >UniRef50_C1RJ73 RNAse PH n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RJ73_9CELL Length = 328 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR D +R + + L GS L G T+ L A+ G Sbjct: 72 VRKDGRRADELRPVTITRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRK----GSGE 127 Query: 374 DTFLFHYNFPPYSVGETG----MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P + + G R RL R + AV+ T+ + Sbjct: 128 GWVTAEYAMLPRATNSRSDRESVRGKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDC 187 Query: 430 EITESNGSSSMASVCGASLALMDA-------------GVPIKAAVAGIAMGLVKEGDNYV 476 ++ +++G + A++ GA +AL DA ++ +VA I++G+V + V Sbjct: 188 DVLQADGGTRTAAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVV----DGV 243 Query: 477 VLSDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGA 529 + D+ +ED + D V + +Q + + + L+ A Sbjct: 244 PVLDLPYEEDVRAETDMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLAVAG 297 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 25/216 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA---KPGQDFFPLTVNYQERTYAA 70 VT+ T +V+V T V + + G +T Y A Sbjct: 83 RPVTI-TRRFLDAGEGSVLVEFGGTKVLCVASFTEGVPRWRKGSGEGWVTAEYAMLPRAT 141 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQV--IATVVSVNPQVNPDI 128 R G+ I+RL+ R +R + + E + V+ + Sbjct: 142 NSRSDRESVR-GKVGGRTHEISRLVGRSLRAVVDVAALGENTIVLDCDVLQADGGTRT-- 198 Query: 129 VAMIGASAALSLSGI---------P----FNGPIGAARVGYINDQYVLNPTQDELKESKL 175 A+ GA AL+ + P + A VG ++ VL+ +E ++ Sbjct: 199 AAITGAYVALADAVAWATTKRLVKPGRTVLRDSVAAISVGVVDGVPVLDLPYEEDVRAET 258 Query: 176 DLVVAGTEAAV-LMVESEAQ--LLSEDQMLGAVVFG 208 D+ V T A + V+ A+ ++ + Sbjct: 259 DMNVVTTGAGAFVEVQGTAEHAPFDRAELDALLDLA 294 >UniRef50_D2UZQ3 3'-5' exoribonuclease/RNA-binding protein-like protein n=1 Tax=Naegleria gruberi RepID=D2UZQ3_NAEGR Length = 300 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 85/247 (34%), Gaps = 18/247 (7%) Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGE-TQALVTATLGTARDAQVLDEL 368 + R D R D R + ++ GV+ + GSA T+ + + Q+ Sbjct: 60 IETGKRQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGP----RQISARN 115 Query: 369 MGERTDTFLFHYNFPPY--------SVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDK 420 Y + S + +R + + + + + Sbjct: 116 EFSDIGAIQCEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKY 175 Query: 421 FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 + V I + +GS+ A++ ASLAL +AG+ + V+ ++ + +V Sbjct: 176 PKSVIDVYCFILQDDGSALSAAISCASLALANAGIEMYDMVSACTTSELEG--HIIVDPT 233 Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 L + G M + + ++ L ++ ++ + + A++ + +M+Q Sbjct: 234 NLEYKYASGGMVCAYMSNLNQVTQLS---QVGDMSYQKIGEAMDLCIDGCSKLNQLMQQC 290 Query: 541 INAPRGD 547 + Sbjct: 291 LLNNSST 297 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 19/221 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDD-TAVFVTVVGQKKAKPGQDF---FPLTVNYQERTYA 69 V ++ G++ +QA + + + T V +V G ++ +F + Y+ +A Sbjct: 75 RNVFMQVGVI-KQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQCEYRVANFA 133 Query: 70 AGR-------IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNP 122 + S E + ++ IR + + + V ++ + Sbjct: 134 YQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIR--LDKYPKSVIDVYCFILQDDG 191 Query: 123 QVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV--VA 180 A+ AS AL+ +GI + A + +++PT E K + +V Sbjct: 192 SALS--AAISCASLALANAGIEMYDMVSACTTSELEGHIIVDPTNLEYKYASGGMVCAYM 249 Query: 181 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINE 221 V + S+ +S ++ A+ + + Q + + Sbjct: 250 SNLNQVTQL-SQVGDMSYQKIGEAMDLCIDGCSKLNQLMQQ 289 >UniRef50_Q7U9I1 Ribonuclease PH n=14 Tax=Cyanobacteria RepID=RNPH_SYNPX Length = 249 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 32/225 (14%) Query: 26 QATAAVMVSMDDTAVFVTVVGQKKA---KPGQDFFPLTVNYQERTYAAGRIPGSFFRREG 82 A ++++V TAV +V ++ + G L+ Y+ +PGS +R+ Sbjct: 29 FALSSLIVRTGRTAVLCSVSLEEDVPRWRRGNGCGWLSAEYR-------LLPGSTPQRQS 81 Query: 83 RP----SEGETLIARLIDRPIRPLFPEGFVNEVQ--VIATVVSVNPQVNPDIVAMIGASA 136 R S I RLI R +R + + E + V+ + ++ GA Sbjct: 82 RELMKLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDVIQADAGTRT--ASITGAWI 139 Query: 137 AL-----------SLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDL-VVAGTEA 184 AL L+ P + A VG I+ +L+ E + +DL VV + Sbjct: 140 ALRRACDLLRSQGVLTQDPIRQQLAAVSVGLIDGTPLLDLDYSEDSRADVDLNVVTAGDG 199 Query: 185 AVLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 +L ++ A+ S ++ + Q ++Q + A Sbjct: 200 RLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRHALATAA 244 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 22/248 (8%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR +R V + S + G T L + +L + V G Sbjct: 7 KRADGRGATELRPFSVDWDPMSFALSSLIVRTGRTAVLCSVSL----EEDVPRWRRGNGC 62 Query: 374 DTFLFHYNFPPYSVGETGMV--GSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 Y P S + R RL R + AV+ T+ + ++ Sbjct: 63 GWLSAEYRLLPGSTPQRQSRELMKLSGRTQEIQRLIGRSLRAVLDMDALGERTLLIDCDV 122 Query: 432 TESNGSSSMASVCGASLALMDA-------GV----PIKAAVAGIAMGLVKEGDNYVVLSD 480 +++ + AS+ GA +AL A GV PI+ +A +++GL+ + L D Sbjct: 123 IQADAGTRTASITGAWIALRRACDLLRSQGVLTQDPIRQQLAAVSVGLI----DGTPLLD 178 Query: 481 ILGDEDHLGDMDFKVAG-SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 + ED D+D V + LQ + ++ + LN A+ ++ Sbjct: 179 LDYSEDSRADVDLNVVTAGDGRLLELQGTAEQAPFSRSELDAMLNLAESGLQELMQGQRH 238 Query: 540 AINAPRGD 547 A+ G Sbjct: 239 ALATAAGS 246 >UniRef50_Q5TMQ4 AGAP011906-PA n=4 Tax=Culicidae RepID=Q5TMQ4_ANOGA Length = 308 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 17/231 (7%) Query: 303 NVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDA 362 ++ + R DGR R + GV+ GSA G T+ +V+ Sbjct: 31 ERLQEALGKDGKRKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVF----DPR 86 Query: 363 QVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFP 422 ++ + F P++ RE + + FP Sbjct: 87 EIPKQNKFCELGELFCDLKFSPFA-PAVRKTHQTDARERSMTAALTSALNPSV-CRHLFP 144 Query: 423 Y-TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKE------GDNY 475 + V + + E +GS+ ++ A LAL DA VP+ V G++ + Sbjct: 145 NLQIDVFANVLEDDGSALAVAITAAGLALGDACVPMFDIVTAATAGVLGDRVVMDPTAEE 204 Query: 476 VVLSDILGDEDHLGDMDFKVAGSRDGISAL----QMDIKIEGITKEIMQVA 522 L E++ G + + D + + +D+++ T + + A Sbjct: 205 EALCLAGHTEENHGLVMLAKLPTLDQVPEIWQYGFVDVELLWDTCKQLNAA 255 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 27/225 (12%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPL---TVNYQERTY 68 + G+++ A + V + +T V V+V ++ F L + + + Sbjct: 51 ESRKYYAKIGVVST-AKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFCDLKFSPF 109 Query: 69 AAGRIPGSFFRREGRPSEGET---LIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVN 125 A P + E L + L R LFP ++ V A V+ + + Sbjct: 110 A----PAVRKTHQTDARERSMTAALTSALNPSVCRHLFPNL---QIDVFANVLEDDG--S 160 Query: 126 PDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEA- 184 VA+ A AL + +P + AA G + D+ V++PT +E L +AG Sbjct: 161 ALAVAITAAGLALGDACVPMFDIVTAATAGVLGDRVVMDPTAEEEA-----LCLAGHTEE 215 Query: 185 --AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 ++M+ A+L + DQ+ +G +++ +L G Sbjct: 216 NHGLVML---AKLPTLDQVPEIWQYGFVDVELLWDTCKQLNAACG 257 >UniRef50_UPI0000D569CA PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit Rrp41-like protein n=3 Tax=Endopterygota RepID=UPI0000D569CA Length = 282 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 93/252 (36%), Gaps = 17/252 (6%) Query: 302 KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARD 361 K V R DGR R + ++TGV+ + GSA +T+ +V+ Sbjct: 29 KTQFSEIVQPNGTRADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSV-FDPREI 87 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 D + F P+S + + E + K+ + + + + Sbjct: 88 PNKTD---YSSKGEIYCEFKFAPFSCHKR-RLHQQDAEEQQFSAIMKQALESAVFRHEFP 143 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL---------VKEG 472 + V + + + ++G++ A++ A +AL AG+P+ + + + + E Sbjct: 144 NFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEE 203 Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLH 532 + + +E++ G + V + + IS + ++ + + A Sbjct: 204 ERLCQVPLFKEEENNHGIVVLSVLATHEQISQF---YQSGYLSYACLSSGIEMLTNAAKD 260 Query: 533 ILGVMEQAINAP 544 I+ ++++ + Sbjct: 261 IVTLVKKCLVKH 272 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 10/168 (5%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + L+TG+++ QA + + +D T V V+V ++ D+ Y E +A Sbjct: 52 RKIFLKTGVVS-QAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYCEFKFA---- 106 Query: 74 PGSFFRREGRPSE-GETLIARLIDRPIR-PLFPEGFVN-EVQVIATVVSVNPQVNPDIVA 130 P S +R + E + ++ + + +F F N +V + A V+ + + Sbjct: 107 PFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAALSAAIT 166 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLV 178 AL+ +GIP I + + + +++PT +E + ++ L Sbjct: 167 AA--GVALAHAGIPMYDLITSVTLAVQGNHLLVDPTLEEERLCQVPLF 212 >UniRef50_C1EDA5 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDA5_9CHLO Length = 261 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 12/257 (4%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLD 366 V R+DGR R + LP + GSA+F G T+ L + + Sbjct: 2 EYVSLEGLRLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAV--HGPHECRRPS 59 Query: 367 ELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVR 426 E + E + +S GE RR +R + + + Sbjct: 60 ERL-EDRLLVKCEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLD 118 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 V ++ +++G A+V A LA++DAG+P++ +A + G + + L D+ E+ Sbjct: 119 VSIQVLQADGGVRAAAVNAAVLAIVDAGIPMQDTMACCSAGYLDD----TPLLDLNYMEE 174 Query: 487 --HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 ++ D + A+ + K + ++ + A A +M + + Sbjct: 175 GGGGPEVHVAYMPQMDRVVAIVTENKA---SVDVFERAHELALDGCRVASKLMRERMIEH 231 Query: 545 RGDISEFAPRIHTIKIN 561 + +K + Sbjct: 232 AKHLWAMRQVTLRVKDD 248 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 66/205 (32%), Gaps = 8/205 (3%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEG 87 + + + +T V V G + + + + + A RR + Sbjct: 33 DGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLVKCEVSMAA-FSTGERRRRTKGDRR 91 Query: 88 ETLIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPF 145 ++ + R I +++ V V+ + V V + +GIP Sbjct: 92 TNELSTFVRRCIETCVSAELLARSQLDVSIQVLQADGGVRAAAVNAAVLAI--VDAGIPM 149 Query: 146 NGPIGAARVGYINDQYVLNPTQDELKES--KLDLVVAGTEAAVLMVESEAQLLSEDQMLG 203 + GY++D +L+ E ++ + V+ + +E S D Sbjct: 150 QDTMACCSAGYLDDTPLLDLNYMEEGGGGPEVHVAYMPQMDRVVAIVTE-NKASVDVFER 208 Query: 204 AVVFGHEQQQVVIQNINELVKEAGK 228 A + +V + + E + E K Sbjct: 209 AHELALDGCRVASKLMRERMIEHAK 233 >UniRef50_UPI00006CFE64 3'''' exoribonuclease family, domain 1 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFE64 Length = 240 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 85/239 (35%), Gaps = 10/239 (4%) Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 + ++ E R DGR+K+ +R +D G GS +G T+ + + + Sbjct: 3 QDFLVLQEFREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNKSTRR- 61 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 E YN P+S + + + + +V+ + Sbjct: 62 -----ESEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEI 116 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 ++ + +++GS+ + SLALMDAG+P+K + + ++ + + Sbjct: 117 DIIVSVIQADGSAKSSIFNAISLALMDAGIPMKDFTVSSTV--ISLNSEILLDATYQEQK 174 Query: 486 DHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 ++ D + ++M K I+++ + A + ++ + Sbjct: 175 KASAELIISYLPRSDQVDFMEM--KSSKISQQDTKEMCKIAVDGCKQMYQILRTFVLES 231 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 24/209 (11%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKA---KPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRP 84 + + T + + G + + F L V Y ++ RR+ Sbjct: 35 EGSCKLIQGLTEIVCLIKGPHNKSTRRESEGF--LNVQYNVAPFS------GTDRRKISK 86 Query: 85 SEGE----TLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAAL 138 + + T R+ + + E+ +I +V+ + I S AL Sbjct: 87 FDKDWNEFTENLRV---SFESVILTEQLGSGEIDIIVSVIQADGSAKSSI--FNAISLAL 141 Query: 139 SLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQLL 196 +GIP ++ V +N + +L+ T E K++ +L+++ V +E ++ + Sbjct: 142 MDAGIPMKDFTVSSTVISLNSEILLDATYQEQKKASAELIISYLPRSDQVDFMEMKSSKI 201 Query: 197 SEDQMLGAVVFGHEQQQVVIQNINELVKE 225 S+ + + + Q + V E Sbjct: 202 SQQDTKEMCKIAVDGCKQMYQILRTFVLE 230 >UniRef50_P46948 Exosome complex component SKI6 n=12 Tax=Saccharomycetaceae RepID=RRP41_YEAST Length = 246 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 13/248 (5%) Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRT-HGSALFTRGETQALVTATLGTARDAQVLDEL 368 R+DGR + +R + P GS+ +G + + L Sbjct: 8 SPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGP---KEPRLKSQ 64 Query: 369 MGERTDTFLFHYNFPPYSVGET-GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VR 426 M N +S E +RR + R + ++ +P T + Sbjct: 65 MDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNV-MLNIYPRTVID 123 Query: 427 VVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDED 486 + + E +G + + G +LAL+DAG+ + ++GI++GL D +L +E+ Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY---DTTPLLDTNSLEEN 180 Query: 487 HLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 + + V G + +S L ++ K I + ++ L + +M++ + Sbjct: 181 AMSTVTLGVVGKSEKLSLLLVEDK---IPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQ 237 Query: 547 DISEFAPR 554 A Sbjct: 238 KRVSNASA 245 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 14/208 (6%) Query: 27 ATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRREG 82 A + + + + V G K+ + L V+ ++ S + E Sbjct: 36 ADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNER 95 Query: 83 RPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSG 142 R E +T + R+ ++ + + + + V+ + + + + G + AL +G Sbjct: 96 RVLEIQTSLVRMFEKNV--MLNIYPRTVIDIEIHVLEQDGGIMGSL--INGITLALIDAG 151 Query: 143 IPFNGPIGAARVGYINDQYVLN-PTQDELKESKLDLVVAGTEAA--VLMVESEAQLLSED 199 I I VG + +L+ + +E S + L V G +L+VE + D Sbjct: 152 ISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVE---DKIPLD 208 Query: 200 QMLGAVVFGHEQQQVVIQNINELVKEAG 227 ++ + G V ++E +++ Sbjct: 209 RLENVLAIGIAGAHRVRDLMDEELRKHA 236 >UniRef50_A2DCK7 3' exoribonuclease family, domain 1 containing protein n=1 Tax=Trichomonas vaginalis RepID=A2DCK7_TRIVA Length = 241 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 12/240 (5%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 RIDGR + +R ++ + G +P GS+ F G+T+ + D G+ Sbjct: 8 TGLRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGP-------RDNRSGD 60 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSE 430 + + ++ S RR + KR + + FP++ + + Sbjct: 61 NAAEIRVTFEYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAI-KRELFPHSKILIAIT 119 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGD 490 + + +GS A++ A+LAL+DAG+P+ V + + L D + + Sbjct: 120 VIQDDGSCQSAAINAATLALIDAGIPMFDFVVSMTVALY--DDKCFLDAGRAESNARFPV 177 Query: 491 MDFKVAGSRDGISALQMDIKIEG-ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 ++ + S I ++ + +IE +K +M A++ K + V+ A Sbjct: 178 LEVSIFPSTSEILSMNLTARIEPQASKNLMAAAIDGCKELHAIMQDVVRVASMERYAQSK 237 Score = 71.9 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 30/212 (14%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIP---GSFFRREGRP 84 T + + T V + G + + G + + V ++ +A ++P + R GR Sbjct: 34 TGSSHFKIGQTEVIAQIFGPRDNRSGDNAAEIRVTFEYADFA--KVPHASDTSMTRRGRE 91 Query: 85 SEGETLIARLIDRPI-RPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGI 143 S E ++ R + I R LFP +++ + TV+ + + A+ A+ AL +GI Sbjct: 92 S--EVIMKRTFEEAIKRELFPH---SKILIAITVIQDDG--SCQSAAINAATLALIDAGI 144 Query: 144 PFNGPIGAARVGYINDQYVLNPTQDELKESKLDL----VVAGTEAAVLM-----VESEAQ 194 P + + V +D+ L+ + E ++ + + T + M +E +A Sbjct: 145 PMFDFVVSMTVALYDDKCFLDAGRAE-SNARFPVLEVSIFPSTSEILSMNLTARIEPQA- 202 Query: 195 LLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 S++ M A+ + + + ++V+ A Sbjct: 203 --SKNLMAAAID----GCKELHAIMQDVVRVA 228 >UniRef50_B2AAV3 Predicted CDS Pa_1_5280 n=11 Tax=Leotiomyceta RepID=B2AAV3_PODAN Length = 277 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 85/251 (33%), Gaps = 20/251 (7%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG--- 370 R+DGR + +R + + GS+ G T+ + T + + G Sbjct: 13 LRVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASG 72 Query: 371 -------ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 + + + +S + G +R + + A FP+ Sbjct: 73 GAGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTL-AATLHTHLFPH 131 Query: 424 T-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAM----GLVKEGDNYVVL 478 + + + + +GS A + A+LA +DAG+P+ V + L Sbjct: 132 SQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYAANDEGADPL 191 Query: 479 SDIL-GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ +E L + G D + AL + +++ ++ L + ++ Sbjct: 192 LDLNHQEEQELPGLTVATLGESDKVVALVCESRVQ---ISRLEGMLAVGVDGCKQVREIL 248 Query: 538 EQAINAPRGDI 548 +Q I A + Sbjct: 249 DQVIKAQGRKM 259 Score = 43.0 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 19/138 (13%) Query: 102 LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI---- 157 LFP +++ + V+S + + + A+ A +GIP + A G Sbjct: 128 LFPH---SQINISLHVLSQDG--SLLAALINAATLACVDAGIPMTDYVTACTAGSTSTYA 182 Query: 158 -NDQ---YVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQ-LLSEDQMLGAVVFGHE 210 ND+ +L+ E +E L VA G V+ + E++ +S + G + G + Sbjct: 183 ANDEGADPLLDLNHQEEQELPG-LTVATLGESDKVVALVCESRVQISR--LEGMLAVGVD 239 Query: 211 QQQVVIQNINELVKEAGK 228 + V + +++++K G+ Sbjct: 240 GCKQVREILDQVIKAQGR 257 >UniRef50_Q4P9I6 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P9I6_USTMA Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 97/244 (39%), Gaps = 13/244 (5%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTG--VLPRTHGSALFTRGETQALVTATLGTARDAQV 364 + AG RIDGR++ +R + ++ G G A T+G T +V+AT+ R+A+ Sbjct: 5 ELLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLT--IVSATVFGPREARS 62 Query: 365 LDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT 424 +M + + P+ E RR + K V+ +P + Sbjct: 63 GANVMH-DRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVI-HTHLYPRS 120 Query: 425 -VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILG 483 + + ++ + +G A++ ++LAL+DAG+ ++ VA ++ G+ + Sbjct: 121 QIDIFVQVHQQDGGVLPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLS---NT 177 Query: 484 DEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 +E L + V I+ ++ ++ E + A A + ME A+ Sbjct: 178 EEQDLPHVTVAVLPRTKQITLASLETRLH---VERFEQIFTLAIQAVAVLHNEMELAVRD 234 Query: 544 PRGD 547 Sbjct: 235 RTKT 238 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 10/225 (4%) Query: 10 QYGQHTVTLETGMMA-RQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTY 68 Q+ ++ ++ G A ++ T V TV G ++A+ G + + Sbjct: 19 QFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRASVNVEVS 78 Query: 69 AAGRIPGSFFRREGRPSEGETLI--ARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNP 126 A P R R L+ A I P+ Q+ V Sbjct: 79 VA---PWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQQDGGV 135 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAV 186 A+ ++ AL +GI + + G + +L+ + E E L V Sbjct: 136 LPAAINASTLALLDAGIAMQDFVASVSCGIHSTSAMLDLSNTE--EQDLPHVTVAVLPRT 193 Query: 187 LMVESEAQLLSE--DQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 + + ++ + V+ + V++ K Sbjct: 194 KQITLASLETRLHVERFEQIFTLAIQAVAVLHNEMELAVRDRTKT 238 >UniRef50_B6HC09 Pc18g05170 protein n=25 Tax=Leotiomyceta RepID=B6HC09_PENCW Length = 265 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 2/156 (1%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R+DGR + +R L + P + GS+ + G T + + G A + G Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSV-HGPAEGRRGDGGSAGSGH 72 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEIT 432 N ++ + R+ R +P+ T+ + + Sbjct: 73 AVVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVL 132 Query: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGL 468 ++GS A++ +LAL+DAG+P+ + G G+ Sbjct: 133 SADGSLLAAALNACTLALVDAGIPMPGLLCGCTSGM 168 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 22/141 (15%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP------LTVNYQERTYAAGRIPGSFFRRE 81 + + +SM +T++ +V G + + G + V+ +A G +R Sbjct: 38 SGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHAVVEVDVNVAGFA-----GVDRKRR 92 Query: 82 GRPSEGETLIARLIDRPIRPLFPE------GFVNEVQVIATVVSVNPQVNPDIVAMIGAS 135 S+ + +R I +R F + + + +V+S + + A+ + Sbjct: 93 AGGSDRQ--SSR-IATTLRSAFQSHLHTYLYPHSTISIHVSVLSADG--SLLAAALNACT 147 Query: 136 AALSLSGIPFNGPIGAARVGY 156 AL +GIP G + G Sbjct: 148 LALVDAGIPMPGLLCGCTSGM 168 >UniRef50_A9FGR1 Ribonuclease PH n=2 Tax=Bacteria RepID=A9FGR1_SORC5 Length = 257 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 25/256 (9%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR D+ R +++ G GS L+ G T L TA++ A ++ G+ Sbjct: 3 RPDGRALDVHRPVEMILGFHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMM----GKGAG 58 Query: 375 TFLFHYNFPPYSVGETG-----MVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 Y P S +P R RL R + A + T+ + Sbjct: 59 WLTAEYQMHPRSSPARREPRDGRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDC 118 Query: 430 EITESNGSSSMASVCGASLALM-------DAGV---P-IKAAVAGIAMGLVKEGDNYVVL 478 ++ E++G + AS+ +AL AG P ++ VA I++G + G + Sbjct: 119 DVLEADGGTRTASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGG----LA 174 Query: 479 SDILGDEDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D++ ED +D V + I +Q + E I + + + A + Sbjct: 175 LDLVYTEDSSARVDMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQ 234 Query: 538 EQAINAPRGDISEFAP 553 +A+++ D+S Sbjct: 235 HRALSSAGVDLSALFQ 250 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 26/235 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQE--RTY 68 V + G R A +V+ T V T + G+ LT YQ R+ Sbjct: 13 RPVEMILG-FHRNAEGSVLYRAGRTVVLCTASVEPTVPAWMMGKGAGWLTAEYQMHPRSS 71 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNE--VQVIATVVSVNPQVNP 126 A R P R PS I RLI R +R + E + + V+ + Sbjct: 72 PARREPRD--GRGKAPSGRTQEIQRLIGRALRAAIDLKHLGEQTIAIDCDVLEADGGTRT 129 Query: 127 DIVAMIGASAALSLS----------GIP-FNGPIGAARVGYINDQYVLNPTQDELKESKL 175 ++ AL+L+ P + A VG++ L+ E +++ Sbjct: 130 --ASITAGFVALALALDRMRAAGSLEAPVLRDQVAAISVGHLPGGLALDLVYTEDSSARV 187 Query: 176 DLVVAGTEAA-VLMVESEAQL--LSEDQMLGAVVFGHEQQQVVIQNINELVKEAG 227 D+ V T ++ V++ A+ + ++ + + + AG Sbjct: 188 DMNVVATAVGSIVEVQATAEDEAIPRAELDRMTDLALAGVASLASAQHRALSSAG 242 >UniRef50_Q2S1M7 Ribosomal protein S1, putative n=2 Tax=Rhodothermaceae RepID=Q2S1M7_SALRD Length = 871 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 18/262 (6%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISAL--QMDIKIEGITKEIMQV 521 I +++ +++ G E L V RD S L +M+ KI + + Sbjct: 279 IEGTIIRRIKGGMIVELFDGMEAFLPGSQIDVRPVRDFESYLETRMEFKIVKLN-PENEN 337 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVI 576 + + H L Q I + I I D+ G G + Sbjct: 338 IVVSHRELIEHELEEQRQEILEQLEVGQVLEGTVKNIVDFGVFI-DLGGVDGLLHITDLS 396 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKV 629 +E++ + V + + E+ + ++ ++I + + G V GKV Sbjct: 397 WGRVSHPSEVVELDQELEVVVLDYEEERQRISLGLKQLRDHPWDQIGNKYDEGDVVEGKV 456 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 I ++GAFV I G EGLVHIS+++ R +E + + +GQ V VK+L +D + +I L Sbjct: 457 VSITNYGAFVEIEKGIEGLVHISEMSWTRHIEHPSQMVSLGQVVDVKILNIDQEERKISL 516 Query: 688 SIKEATEQSQPAAAPEAPAAEQ 709 +K+ + PA Sbjct: 517 GMKQLEPDPWEGISDRYPAGTV 538 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 +++ + + + + +EI ++EVG+V G V IVDFG F+ +G G Sbjct: 327 KIVKLNPENENIVVSHRELIEHELEEQRQEILEQLEVGQVLEGTVKNIVDFGVFIDLG-G 385 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPE 703 +GL+HI+ ++ RV ++ +++ QE+ V VL+ + + RI L +K+ + + Sbjct: 386 VDGLLHITDLSWGRVSHPSEVVELDQELEVVVLDYEEERQRISLGLKQLRDHPWDQIGNK 445 Query: 704 APAAEQGE 711 + E Sbjct: 446 YDEGDVVE 453 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 16/263 (6%) Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 V + G VK ++ V D+ G + L D +++D ++E + + + Sbjct: 363 VGQVLEGTVKNIVDFGVFIDLGGVDGLLHITDLSWGRVSHPSEVVELDQELEVVVLD-YE 421 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV-IRAL 579 + + I + ++ +I ++ G G V I + Sbjct: 422 EERQRISLGLKQLRDHPWDQIGNKYDEGDVVEGKVVSITNYGAFVEIEKGIEGLVHISEM 481 Query: 580 -----TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTG 627 E + + VKI D E+ K ++ E I+ G V TG Sbjct: 482 SWTRHIEHPSQMVSLGQVVDVKILNIDQEERKISLGMKQLEPDPWEGISDRYPAGTVLTG 541 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRI 685 V I +FG FV I G +GLVH+S ++ K++ D + QE+ V +L +D + RI Sbjct: 542 TVRNITNFGVFVEIEPGIDGLVHVSDLSWTKKIRHPGDMVDEEQELDVVILNIDEERRRI 601 Query: 686 RLSIKEATEQSQPAAAPEAPAAE 708 L K+ A Sbjct: 602 SLGHKQVKTNPWDQFADAYEEGN 624 Score = 65.4 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 22/193 (11%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV-----IGK 571 +++ V + I M+Q P IS+ P + I + I Sbjct: 498 QVVDVKILNIDQEERKISLGMKQLEPDPWEGISDRYPAGTVLTGTVRNITNFGVFVEIEP 557 Query: 572 GGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEIT 616 G + +++ G ++ E + V I D E+ + ++ ++ Sbjct: 558 GIDGLVHVSDLSWTKKIRHPGDMVDEEQELDVVILNIDEERRRISLGHKQVKTNPWDQFA 617 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E G TG+V R+ D G V + E V S++ + + ++ G E+ ++V Sbjct: 618 DAYEEGNDTTGEVVRVEDKGLVVQLPLDVEAFVPGSELKNG-PKAFKNHYHEGDELELQV 676 Query: 677 LEVDRQGR-IRLS 688 + D+ + I LS Sbjct: 677 IRFDKDQKDIVLS 689 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 16/218 (7%) Query: 508 DIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEF-APRIHTIKINPDKIK 566 + G T + ++ + A + ++ D+ E +++N D + Sbjct: 153 TGETYGETVSLDELETEEQAPADTSVYDQFRDVVDETSIDVREQDIVEGRVLRVNEDYVV 212 Query: 567 DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI--------RRIEEITAE 618 IG I + E I D V + + + + RR + + Sbjct: 213 IDIGYKSDGIVSRDEFGEEEIHPGDTVEVYLERKEDRDGQLVLSKEQADKVRRWQRVEEI 272 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 E V G + R + G V + G E + SQI + V YL+ + K+++ Sbjct: 273 YENEEVIEGTIIRRIKGGMIVELFDGMEAFLPGSQIDVRPVRDFESYLET--RMEFKIVK 330 Query: 679 VDRQGR-IRLSIKEA----TEQSQPAAAPEAPAAEQGE 711 ++ + I +S +E E+ + + + E Sbjct: 331 LNPENENIVVSHRELIEHELEEQRQEILEQLEVGQVLE 368 >UniRef50_C4XQS6 30S ribosomal protein S1 n=3 Tax=Desulfovibrio RepID=C4XQS6_DESMR Length = 576 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 102/267 (38%), Gaps = 18/267 (6%) Query: 459 AAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEI 518 ++G + +K G Y V + +D + D + + + ++ I + Sbjct: 122 DVISGKIVRRIKGG--YTVDLGGVEAFLPGSHVDLRPVPDMDALVGQEFEFRVLKINRRR 179 Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG----- 573 + + M + + + R+ I D+ G G Sbjct: 180 -SNVIVSRRVLLEERRDSMRKDLLKTLEEGQTVTGRVKNITEY-GVFVDLGGLDGLMHIT 237 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYT 626 + + + + D+ +K+ + D +K K ++ E I + + Sbjct: 238 DMSWKRIKHPKELVHLGDELELKVLSFDQDKQKVSLGMKQLIADPWENIAGKYPEDTRMS 297 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGR 684 GKVT +VD+GAFV + G EGLVHIS+++ R + + + +G EV V VL VD + R Sbjct: 298 GKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKR 357 Query: 685 IRLSIKEATEQSQPAAAPEAPAAEQGE 711 I L +K+ A + P E Sbjct: 358 ISLGMKQVRPNPWDIVAEKYPEGTILE 384 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 83/213 (38%), Gaps = 22/213 (10%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----K 571 + +++ + + + M+Q I P +I+ P + + D Sbjct: 255 DELELKVLSFDQDKQKVSLGMKQLIADPWENIAGKYPEDTRMSGKVTNLVDYGAFVELEP 314 Query: 572 GGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEIT 616 G + ++E + + D+ V + + D +K + ++ + + Sbjct: 315 GVEGLVHISEMSWTRKLRHPSQMVHVGDEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVA 374 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVK 675 + G + G V I +FG F+ I G +GL+H+S I+ K+V + + G V K Sbjct: 375 EKYPEGTILEGSVKNITEFGIFIGIEDGIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAK 434 Query: 676 VLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAA 707 VL VD++ + L IK+ +E P Sbjct: 435 VLTVDKENEKFTLGIKQLSEDPWTRVPDTYPVG 467 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 21/197 (10%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--S 574 + ++V + + I M+Q P ++E P ++ + I + G Sbjct: 342 DEVEVVVLSVDPDKKRISLGMKQVRPNPWDIVAEKYPEGTILEGSVKNITEFGIFIGIED 401 Query: 575 VIRALT-----------EETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEIT 616 I L G + D K+ D E K + + Sbjct: 402 GIDGLIHVSDISWTKKVRHPGEMFKSGDIVMAKVLTVDKENEKFTLGIKQLSEDPWTRVP 461 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 VG + G VT I DFG FV + G EGLVH+S+I+ K+V+ + + G E+ KV Sbjct: 462 DTYPVGAMVKGTVTNITDFGLFVEVEEGIEGLVHVSEISRKKVKTPAEIYKEGDEIEAKV 521 Query: 677 LEVD-RQGRIRLSIKEA 692 + V + R+ LSIK Sbjct: 522 IHVSADERRLGLSIKSI 538 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 72/203 (35%), Gaps = 13/203 (6%) Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 ++ + ++ + + + + K + + Sbjct: 1 MDKTQEMQNNSNMDMEVNFEDALENYLNEDFGDLEEGSITPGVVVRIGKEHVLVDVNFKS 60 Query: 571 KGGSVIRALTEETGT-TIEIEDDGTVKIAATDG--------EKAKHAIRRIEEITAEIEV 621 +G + + G +++ D V + + + + ++ +++ E Sbjct: 61 EGQIPVSEFMDALGELEVKVGDQIDVYVVSKNESEGTIIMSRERAKRMQLFDKLEEIQEK 120 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 V +GK+ R + G V +G G E + S + + V + +GQE +VL+++R Sbjct: 121 DDVISGKIVRRIKGGYTVDLG-GVEAFLPGSHVDLRPVPDMDAL--VGQEFEFRVLKINR 177 Query: 682 QG-RIRLSIKEATEQSQPAAAPE 703 + + +S + E+ + + + Sbjct: 178 RRSNVIVSRRVLLEERRDSMRKD 200 >UniRef50_C1XM20 Ribonuclease PH n=2 Tax=Meiothermus RepID=C1XM20_MEIRU Length = 238 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 83/247 (33%), Gaps = 27/247 (10%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR +R L +R G + GSAL G T+ LV +L V R Sbjct: 2 KRKDGRAAQELRPLTLRMGYVHYAEGSALVELGHTKVLVNVSLTDGVPRHVSG-----RE 56 Query: 374 DTFLFHYNFPPYSVGET--GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 + YN P S E R R R A + TV + +++ Sbjct: 57 GWLMAEYNLLPRSTKERKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADV 116 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAV-------------AGIAMGLVKEGDNYVVL 478 +++G + +AS+ G AL A + V A +++G + + +L Sbjct: 117 IQADGGTRVASLLGGYAALHMA---MDRLVNQGKLDEWPLTEFAAVSVGWMSDDS---LL 170 Query: 479 SDILGDEDHLGDMD-FKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 D+ ED D VA I L + + + Q L ++ + Sbjct: 171 LDLTQIEDENAWADLTVVATQSGDIIELHGAGEGRPVPRSTYQAMLEMGLAHIPELVRRV 230 Query: 538 EQAINAP 544 + Sbjct: 231 HAQLKNR 237 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 36/227 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF--FPLTVNYQERTYAAG 71 +TL G + A + +V + T V V V L Y Sbjct: 13 RPLTLRMGYV-HYAEGSALVELGHTKVLVNVSLTDGVPRHVSGREGWLMAEYN------- 64 Query: 72 RIPGSFFRREGRP----SEGETLIARLIDRPIRPLFPEGFV--NEVQVIATVVSVNPQVN 125 +P S R+ R S I R + R R + V + A V+ + Sbjct: 65 LLPRSTKERKERERQKISGRTAEIQRFLGRAFRAALDLSLLPNKTVVIDADVIQADGGTR 124 Query: 126 PDIVAMIGASAALSLS-----------GIPFNGPIGAARVG-YINDQYVLNPTQDELKES 173 + +++G AAL ++ P A VG +D +L+ TQ E + + Sbjct: 125 --VASLLGGYAALHMAMDRLVNQGKLDEWPLTE-FAAVSVGWMSDDSLLLDLTQIEDENA 181 Query: 174 KLDLVVAGTEAAVLMVE----SEAQLLSEDQMLGAVVFGHEQQQVVI 216 DL V T++ + +E E + + + G ++ Sbjct: 182 WADLTVVATQSGDI-IELHGAGEGRPVPRSTYQAMLEMGLAHIPELV 227 >UniRef50_Q8ILI7 Exosome complex exonuclease rrp41, putative n=6 Tax=Plasmodium RepID=Q8ILI7_PLAF7 Length = 246 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 21/244 (8%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGV---LPRTHGSALFTRGETQALVTATLGTARDAQ 363 + RIDGR+ D R + + G L G + F G T+ + + + Sbjct: 5 QYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFA--YIQGPNEYR 62 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 DE + P+++ E S R + + +D + Sbjct: 63 RPDEKCL-----VKCNVFLSPFNILEKKRKKSKDNVTREISSYI-RNICNHIILLDLYKN 116 Query: 424 T-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 + + + I E +G A+V LAL+DAG+ IK ++ ++ ++ ++ D Sbjct: 117 SEINIFLYIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNN----IIVDGN 172 Query: 483 GDEDH--LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 E + ++ + S + I L+ D ++ +I Q L A +H+ +M+ + Sbjct: 173 QFEVNSGSPELTLAIDMSSNNIVLLEFDAEV---PIDIFQSMLKTCAQACIHVGNIMKLS 229 Query: 541 INAP 544 I Sbjct: 230 IKEN 233 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 5/113 (4%) Query: 102 LFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQY 161 L +E+ + ++ + A+ AL +GI I A+ V Y+ + Sbjct: 110 LLDLYKNSEINIFLYIIERDGG--LKAAAVNTCILALIDAGIAIKYFISASSVLYLQNNI 167 Query: 162 VLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQ 212 +++ Q E+ +L +A + ++++E +A + D + + Sbjct: 168 IVDGNQFEVNSGSPELTLAIDMSSNNIVLLEFDA-EVPIDIFQSMLKTCAQAC 219 >UniRef50_B8CWY2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWY2_HALOH Length = 678 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 14/255 (5%) Query: 463 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGIT---KEIM 519 G+ + + + + + L ++ + + D I D + + + Sbjct: 320 GVYVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIVLTLEDEEGNMVLSKKRADF 379 Query: 520 QVALNQAKGARLHILGVMEQAINAPRGDISEFAPR---IHTIKINPDKIKDVIGKGGSVI 576 + A + A + + + +G + +H + ++D+ G + Sbjct: 380 EKAWERILKAYENDEIIEAEVTREVKGGLVVDIGLRGFVHASHVAIGYVEDLSDYVGKTL 439 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 R IE+E D + + + ++ E+ E++ G+V GKVT+IVDFG Sbjct: 440 RL------KVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEELQEGQVVKGKVTKIVDFG 493 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQ 695 AFV +G G EGL+HIS+++ R+E ++ L+ GQE+ VKVL V+ + RI L +K+ Sbjct: 494 AFVDLG-GIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEERISLGLKQLLPD 552 Query: 696 SQPAAAPEAPAAEQG 710 A + E Sbjct: 553 PWEEFAKKHYEGEVV 567 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 15/237 (6%) Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 H + + +K+ + ++ V L+ K E+ + Sbjct: 417 FVHASHVAIGYVEDLSDYVGKTLRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKTLEEL 476 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDGTVKIAA 599 + + D+ G G + E +E + VK+ A Sbjct: 477 QEGQVVKGKVTKIVDF--GAFVDLGGIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLA 534 Query: 600 TDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 + E+ + ++ EE + G V +G +T+IVDFGAF+ I G EGL+HIS Sbjct: 535 VNKEEERISLGLKQLLPDPWEEFAKKHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHIS 594 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 Q++ + V+ + + +G+E+ +++ +D + R+ LSIK EQ + EAP E Sbjct: 595 QLSHRHVKTPDEVVSVGEEIKAEIINIDPEQKRVGLSIKALEEQPETPKKVEAPKKE 651 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 2/141 (1%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 L EE + ++ + + + + A+++ G+ GKV I Sbjct: 257 EKRDAELQEEIQEGVNTDNTPETPNGEENPIENEEEFNYDDNNPADLKKGQQVKGKVVEI 316 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKE 691 D G +V +G EGL+ + +++ + E + ++ G+E+ V VL + D +G + LS K Sbjct: 317 GDNGVYVDVGYKTEGLIPLRELSHRDFEDPHEIVEEGEEIDVIVLTLEDEEGNMVLSKKR 376 Query: 692 AT-EQSQPAAAPEAPAAEQGE 711 A E++ E E Sbjct: 377 ADFEKAWERILKAYENDEIIE 397 >UniRef50_B1I3Y7 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridiales RepID=B1I3Y7_DESAP Length = 677 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 8/189 (4%) Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 582 L++A + GV+ + + + ++ ++D+ G I A Sbjct: 401 LDKAFHGGETVRGVVREVVKGGLLVDLGVRSFLPASQVERGYVEDLSQYVGREISARI-- 458 Query: 583 TGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 IE+ I + + R+ +E + G V G V R+ FGAFV IG Sbjct: 459 ----IELNKARKKVILSRKVLLEEEYSRKRKETLETTQEGDVVKGVVRRLTQFGAFVDIG 514 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAA 701 G +GL+HIS+I+ R+ ++ L++G E+ V+VL +DR+ ++ LS+K+ Sbjct: 515 -GLDGLLHISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVV 573 Query: 702 PEAPAAEQG 710 P Sbjct: 574 ENYPVGSVV 582 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 22/210 (10%) Query: 518 IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG---- 573 + A + +R +L + ++ + + + + GG Sbjct: 460 ELNKARKKVILSRKVLLEEEYSRKRKETLETTQEGDVVKGVVRRLTQFGAFVDIGGLDGL 519 Query: 574 ----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVG 622 + +++ D+ V++ D E K ++ E++ VG Sbjct: 520 LHISEISWHRINHPSEVLKVGDELEVQVLRIDRENEKVSLSLKQVLPNPWEQVVENYPVG 579 Query: 623 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DR 681 V + +V R+V FGAFV + G EGLVHIS +AD V K D + GQ++ VKVL V D Sbjct: 580 SVVSARVVRLVPFGAFVELEPGVEGLVHISHLADWHVAKPEDVIAEGQQINVKVLSVDDE 639 Query: 682 QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RIRLS++E + + + E Sbjct: 640 NKRIRLSLREVVKD------KDYHNDQGSE 663 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 15/168 (8%) Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 ++ + P + +V+ G +E + +D + Sbjct: 333 QDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVG--------DEIDVWVVKAEDNEGR 384 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 I + G A++ + + G G V +V G V + G + SQ+ Sbjct: 385 IILSKGRA--DAVKAWDTLDKAFHGGETVRGVVREVVKGGLLVDL--GVRSFLPASQVER 440 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPE 703 VE ++ Y +G+E+ +++E+++ + ++ LS K E+ E Sbjct: 441 GYVEDLSQY--VGREISARIIELNKARKKVILSRKVLLEEEYSRKRKE 486 Score = 61.9 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 675 + G + G + ++ V +G EG+V + +++ V + +Q+G E+ V Sbjct: 315 VRSLRSGDIVRGVIVQVGQDEVLVDVGAKSEGVVPLRELSCYDVSSPDEVVQVGDEIDVW 374 Query: 676 VLEV-DRQGRIRLSI-KEATEQSQPAAAPEAPAAEQG 710 V++ D +GRI LS + ++ E Sbjct: 375 VVKAEDNEGRIILSKGRADAVKAWDTLDKAFHGGETV 411 >UniRef50_UPI000186F240 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186F240 Length = 278 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 11/257 (4%) Query: 284 EDETLDENELGEILHAIE--KNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSA 341 + T E+ +L ++ ++ +R + + R DGR + R + ++TGV+ + GSA Sbjct: 9 QVPTDSESYQHFVLKDVKDYESTLREILDNNKIRKDGRTFEDQRKIYMKTGVVTQAKGSA 68 Query: 342 LFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREI 401 T+ LV+ R+ L E + F P+ E E Sbjct: 69 YLELNNTKVLVSVF--EPREIPRLSEFTPN--GEIYCEFKFAPFYGLERKG-HIMDLEEK 123 Query: 402 GHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAV 461 + KR + + + + V V + + +++GS A++ A LAL DAG+P+ + Sbjct: 124 DLSIILKRSLEPAVCRHEFPNFQVDVYALLLDNDGSCLSAAITAAGLALADAGIPMYDIL 183 Query: 462 AGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQV 521 + +G+ + ++ D +E+ FK S GI +L ++ +T+ Sbjct: 184 TSVTLGIHND----MIFIDPNFEEEKFCKSFFKNKTSEIGIISLSYMPEMAQVTEITQSG 239 Query: 522 ALNQAKGARLHILGVME 538 ++ + L + + Sbjct: 240 TVSINTILKSMDLLISK 256 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 6/162 (3%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 + ++TG++ QA + + +++T V V+V ++ +F P Y E +A Sbjct: 52 RKIYMKTGVVT-QAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIYCEFKFA---- 106 Query: 74 PGSFFRREGRPSE-GETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMI 132 P R+G + E ++ ++ R + P QV + ++ + A+ Sbjct: 107 PFYGLERKGHIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLDNDGSCLSAAIT 166 Query: 133 GASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESK 174 A AL+ +GIP + + +G ND ++P +E K K Sbjct: 167 AAGLALADAGIPMYDILTSVTLGIHNDMIFIDPNFEEEKFCK 208 >UniRef50_Q30ZT8 SSU ribosomal protein S1P n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30ZT8_DESDG Length = 482 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 12/285 (4%) Query: 438 SSMASVCGASLALMDA---GVPIKAAVAG-IAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 S A G+++AL +A GVP++ V G E + + + Sbjct: 93 SRSAGSAGSAMALTEAFENGVPVEGKVTAQCKGGFNVEVMQRRAFCPVSQIDSRFVENPE 152 Query: 494 KVAGSRDG--ISALQMDIKIEGITKEIMQVAL-NQAKGARLHILGV--MEQAINAPRGDI 548 + G I+ + + + +++ ++ A +++ + L + + Sbjct: 153 EYLGQTFQFMITRCENNGRNVVVSRRVLLEAQQEESRKEYMKTLNEGDVVDVCITRLTNF 212 Query: 549 SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-EDDGTVKIAATDGEKAKH 607 FA ++ + + S A+T+ ++ + + T K + Sbjct: 213 GAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVLKIESTAKGLRIALSAKQV 272 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYL 666 + + G V GKV R FGAFV + G EGLVHIS+++ +R+ K D + Sbjct: 273 MEDPWNTVADRLAAGTVVEGKVVRCTPFGAFVEVLPGIEGLVHISEMSWTRRILKAEDVV 332 Query: 667 QMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 G V VK+ ++D + RI LS++EA AA + + Sbjct: 333 IPGDTVSVKIKDIDSAKRRISLSLREAEGDPWDGAAEKFAPGTEV 377 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 25/277 (9%) Query: 452 DAGVPI------KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISAL 505 +AG P+ K +V + V V I +E + G+ Sbjct: 23 EAGSPLRVGEKVKGSVVAMDESSVFIATGSKVDGVIDAEELKDKE------GNVTCAVGD 76 Query: 506 QMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKI 565 ++D+ + IT+ ++ L+++ G+ + + E N + A + + Sbjct: 77 ELDLYVVAITQGEVR--LSRSAGSAGSAMALTEAFENGVPVEGKVTAQCKGGFNVEVMQR 134 Query: 566 KDVIGKGGSVIRALT---EETGTTIEI-----EDDGTVKIAATDGEKAKHAIRRIEEITA 617 + R + E G T + E++G + + +E Sbjct: 135 RAFCPVSQIDSRFVENPEEYLGQTFQFMITRCENNGRNVVVSRRVLLEAQQEESRKEYMK 194 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 + G V +TR+ +FGAF + G EGL+HIS++ RV+ + + G + KVL Sbjct: 195 TLNEGDVVDVCITRLTNFGAFAELAPGVEGLIHISELGWARVQSADEAVTQGDTLRAKVL 254 Query: 678 EVD---RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +++ + RI LS K+ E A A E Sbjct: 255 KIESTAKGLRIALSAKQVMEDPWNTVADRLAAGTVVE 291 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 9/141 (6%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVT 630 + + D +VKI D K + ++ + + G TG V Sbjct: 323 RRILKAEDVVIPGDTVSVKIKDIDSAKRRISLSLREAEGDPWDGAAEKFAPGTEVTGTVE 382 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSI 689 + FG FV I G GL+ S+I+ + + G V + V+E++ + ++ L+ Sbjct: 383 KCAKFGMFVNIAPGITGLLPQSRISAAPKSGLAGC-KPGDTVTLAVMEINPAERKVTLTT 441 Query: 690 KEATEQSQPAAAPEAPAAEQG 710 K+A Q + Sbjct: 442 KDAARQEDAEIPASYRVQPKS 462 >UniRef50_B3QSU3 Ribosomal protein S1 n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSU3_CHLT3 Length = 616 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 24/250 (9%) Query: 479 SDILGDEDHLGDMDFKVAGSRDG--ISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 + G E L V RD + MD ++ I + ++ IL Sbjct: 150 VSLSGVEAFLPGSQIDVKPVRDFDALVGQTMDFRVVKINPLTQNIVVSH-----KVILEE 204 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGTTIE 588 +A + + N + GG + + Sbjct: 205 EYEARRKEMLANIKVGMVLEGTVKNITDFGIFVDLGGLDGLVHITDITWGRISHPSEAVN 264 Query: 589 IEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI 641 ++D V + D +K + ++ E I + G TGKV I D+GAFV I Sbjct: 265 LDDPIKVVVIGYDADKQRVSLGMKQLTPHPWENIEEKYPAGTRVTGKVVSITDYGAFVEI 324 Query: 642 GGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPA 699 G EGLVHIS+++ + ++ ++ MGQEV +L +D++ ++ LS+K+ E Sbjct: 325 EKGIEGLVHISEMSWTQHIKHPNQFVTMGQEVECVILNIDKEHTKLSLSMKQTEEDPWIV 384 Query: 700 AAPEAPAAEQ 709 A + P + Sbjct: 385 LAEKYPVDSE 394 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 78/203 (38%), Gaps = 8/203 (3%) Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 K + I + + + + ++ + +S + +I+ ++D Sbjct: 113 SKRKADVMRIWEKIYDSLEKGTIISGKIIARVKGGMTVSLSGVEAFLPGSQIDVKPVRDF 172 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 G + ++I + + + R +E+ A I+VG V G Sbjct: 173 DALVGQTMDFRV------VKINPLTQNIVVSHKVILEEEYEARRKEMLANIKVGMVLEGT 226 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRL 687 V I DFG FV +G G +GLVHI+ I R+ ++ + + + V V+ D R+ L Sbjct: 227 VKNITDFGIFVDLG-GLDGLVHITDITWGRISHPSEAVNLDDPIKVVVIGYDADKQRVSL 285 Query: 688 SIKEATEQSQPAAAPEAPAAEQG 710 +K+ T + PA + Sbjct: 286 GMKQLTPHPWENIEEKYPAGTRV 308 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 22/202 (10%) Query: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGGSVIRALTE--- 581 + + M+Q P +I E P + I D KG + ++E Sbjct: 280 KQRVSLGMKQLTPHPWENIEEKYPAGTRVTGKVVSITDYGAFVEIEKGIEGLVHISEMSW 339 Query: 582 -----ETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKV 629 + + + I D E K ++ + + V + G V Sbjct: 340 TQHIKHPNQFVTMGQEVECVILNIDKEHTKLSLSMKQTEEDPWIVLAEKYPVDSEHKGIV 399 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 I DFG FV + G +GLVHIS ++ K++ ++ ++ QE+ VKVL+ D + RI L Sbjct: 400 RNITDFGVFVELESGVDGLVHISDLSWTKKIRHPSEIVKKNQELDVKVLKFDVKARRIAL 459 Query: 688 SIKEATEQSQPAAAPEAPAAEQ 709 K+ + + Sbjct: 460 GHKQIEPDPWSDFENDYAVGTE 481 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 12/142 (8%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 ++ + VK+ D + + A+ + + VG GK+ +I Sbjct: 430 IRHPSEIVKKNQELDVKVLKFDVKARRIALGHKQIEPDPWSDFENDYAVGTETKGKIAQI 489 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS--- 688 ++ G V + G +G V S + V + ++G E+P+KV+E D RI LS Sbjct: 490 IEKGVIVELPSGVDGFVPASHLLQGGVRDINASFKVGDELPLKVIEFDRENKRIILSALE 549 Query: 689 -IKEATEQSQPAAAPEAPAAEQ 709 K +++ + P +Q Sbjct: 550 YFKGKSKEEIEEYMKQHPKEKQ 571 >UniRef50_A4J3N5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Clostridia RepID=A4J3N5_DESRM Length = 672 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 16/233 (6%) Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI--TKEIMQVALNQAKGARLHILGVM 537 ++ +++ V + D + + + + ++ A+ Q + + V+ Sbjct: 337 NLQEIVKVGDEIECVVIKAEDNEGKIILSKERADAEKAWDGLEEAMEQGTIIKGVVREVV 396 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGT-TIEIEDDGTVK 596 + + G + + G + + L +E IE+ Sbjct: 397 KGGMLVDVGVRAFLPASLVE-----------RGYVEDLSKYLNQEFEVRVIEMNKQRKKV 445 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 + + + R+ EE+ A ++ G++ G V RI +FGAFV +G G +GL+HIS+++ Sbjct: 446 VVSRKAVLEEQNARKREELLASLQEGQIVKGIVRRITNFGAFVDLG-GLDGLLHISEMSW 504 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAE 708 R+ + +++G E+ V VL+VD + +I L +K+ + P Sbjct: 505 HRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPNPWDNVEEKYPVGN 557 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 16/210 (7%) Query: 518 IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG---- 573 M + +R +L + + I + GG Sbjct: 437 EMNKQRKKVVVSRKAVLEEQNARKREELLASLQEGQIVKGIVRRITNFGAFVDLGGLDGL 496 Query: 574 ----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVG 622 + +++ D+ V + D + K ++ + + + VG Sbjct: 497 LHISEMSWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPNPWDNVEEKYPVG 556 Query: 623 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR- 681 ++ KV R+ FGAFV + G EGLVHIS +AD+ VEK D ++ G+EV VKVL +D Sbjct: 557 NIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMDPS 616 Query: 682 QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + R+RLSI+E + + A E+ + Sbjct: 617 EKRVRLSIREVNGERRSAREARPRKQEEVQ 646 Score = 61.5 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 2/140 (1%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G I LT T I ++ ++ D + G + G V ++ Sbjct: 249 GHEIVGLTAGASTPDAIIEEVKKRMNEMDQMTNGEEGMSEAMEVKSPQAGELVKGIVVQV 308 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSI-K 690 V I EG++ ++A V+ + + +++G E+ V++ D +G+I LS + Sbjct: 309 GMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVIKAEDNEGKIILSKER 368 Query: 691 EATEQSQPAAAPEAPAAEQG 710 E++ Sbjct: 369 ADAEKAWDGLEEAMEQGTII 388 >UniRef50_C6XS49 RNA binding S1 domain protein n=62 Tax=Bacteroidetes RepID=C6XS49_PEDHD Length = 644 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 103/259 (39%), Gaps = 18/259 (6%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGD--MDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 524 G VK ++ DI+G E L +D K D M+ K+ I + + Sbjct: 174 GFVKSRTKGGLIVDIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEFKVVKINH-EFKNVVV 232 Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRAL 579 K L + I + + I I D+ G G + Sbjct: 233 SHKILIEDDLESQKVEIVSKLEKGQVLEGTVKNITDFGVFI-DLGGVDGLLHITDISWGR 291 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 E + +++ V + D EK + A+ E + A++ +G GK+ + Sbjct: 292 IEHPKEVLSLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLNADLAIGSKVKGKIVTV 351 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 D+GAF+ I G EGL+H+S+++ + + ++L++G E+ +VL +D ++ L IK Sbjct: 352 ADYGAFLEIIPGVEGLIHVSEMSWSQNLRSPQEFLKVGDEIEAEVLTLDREDRKMSLGIK 411 Query: 691 EATEQSQPAAAPEAPAAEQ 709 + T+ A P + Sbjct: 412 QLTQDPWQNVAERYPIGSK 430 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 8/165 (4%) Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 DI + +I+ I+D G + ++I + + + Sbjct: 187 DIMGVEAFLPGSQIDIKPIRDYDVYVGKTMEF------KVVKINHEFKNVVVSHKILIED 240 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 + EI +++E G+V G V I DFG F+ +G G +GL+HI+ I+ R+E + L Sbjct: 241 DLESQKVEIVSKLEKGQVLEGTVKNITDFGVFIDLG-GVDGLLHITDISWGRIEHPKEVL 299 Query: 667 QMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + +++ V VL+ D + RI L +K+ T + + + Sbjct: 300 SLDEKINVVVLDFDDEKKRIALGLKQLTPHPWESLNADLAIGSKV 344 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 587 IEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +++ D+ ++ D E K ++ + + +G +T V + +FG FV Sbjct: 386 LKVGDEIEAEVLTLDREDRKMSLGIKQLTQDPWQNVAERYPIGSKHTAVVKNMTNFGVFV 445 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 I G +GL+HIS ++ K+V ++ ++G + V VLE+D ++ L K+ E Sbjct: 446 EIEEGIDGLIHISDLSWSKKVNHPNEFTKVGDTLAVVVLELDVDNRKLSLGHKQLEENPW 505 Query: 698 PAAA 701 Sbjct: 506 DTFE 509 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 18/139 (12%) Query: 587 IEIEDDGTVKIAATDGE--------KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 +++ D V + A + K R E I ++ R+ G V G Sbjct: 126 LKVGDKVDVFVEAPEDANGQLILSRKRAKTQRSWESINEALDNDRIINGFVKSRTKGGLI 185 Query: 639 VAIGGGKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ- 695 V I G E + SQI ++ + DY + +G+ + KV++++ + + +S K E Sbjct: 186 VDIM-GVEAFLPGSQID---IKPIRDYDVYVGKTMEFKVVKINHEFKNVVVSHKILIEDD 241 Query: 696 ---SQPAAAPEAPAAEQGE 711 + + + E Sbjct: 242 LESQKVEIVSKLEKGQVLE 260 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 12/117 (10%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 ++ D V + D + K + + + ++ G V ++ Sbjct: 466 VNHPNEFTKVGDTLAVVVLELDVDNRKLSLGHKQLEENPWDTFETIFTLDSIHQGTVVKV 525 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLS 688 D GA +A+ G EG V +A + ++ + K++E ++ RI +S Sbjct: 526 TDKGAVIALPYGVEGFVPTKHMAKED----GSVIKAEETNDFKIIEFNKDAKRIVVS 578 Score = 46.5 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 K + +I G + +G V I + + +G +GLV S+ D Sbjct: 71 RKKFEDMYTDTFNQITQGEIISGTVVSINNKDVVLNVGFKSDGLVSTSEFRDTP------ 124 Query: 665 YLQMGQEVPVKVLE-VDRQGRIRLSIK-EATEQSQPAAAP 702 L++G +V V V D G++ LS K T++S + Sbjct: 125 DLKVGDKVDVFVEAPEDANGQLILSRKRAKTQRSWESINE 164 >UniRef50_C7H149 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H149_9FIRM Length = 703 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 14/230 (6%) Query: 483 GDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAIN 542 GDE + +S +M+ + ++ ALN + ++ ++ ++ + Sbjct: 369 GDEIQAKVLKTDDGDGSILLSRRKMEASVH---WAELEDALNNDETVKVDVVRAVKSGVI 425 Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 A ++S F P + + + +G+ I ++ I + Sbjct: 426 ANYKEVSGFIPLSQLSERFIEDASEFVGQTME---------AKVIRVDQKLGKAIFSPKQ 476 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 + + +R++E+ ++ VG GKV R ++GAFV IG G +GL+HIS+I+ +++ Sbjct: 477 LQKEEKNKRLQELWKKLNVGDDIEGKVMRFTEYGAFVDIG-GVDGLLHISEISWGKLKHP 535 Query: 663 TDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 ++ L +G + VK+L ++ +G+I L K+ + + A + E Sbjct: 536 SEVLTVGDTINVKILSLNPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVE 585 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 96/248 (38%), Gaps = 12/248 (4%) Query: 459 AAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEI 518 V + G++ + + + + G +++D K+ K I Sbjct: 415 DVVRAVKSGVIANYKEVSGFIPLSQLSERFIEDASEFVGQTMEAKVIRVDQKLG---KAI 471 Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRA 578 Q + + + ++ + + ++ + ++ + Sbjct: 472 FSPKQLQKEEKNKRLQELWKKLNVGDDIEGKVMRFTEYGAFVDIGGVDGLLHIS-EISWG 530 Query: 579 LTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTR 631 + + + D VKI + + EK K ++ I + + G G + + Sbjct: 531 KLKHPSEVLTVGDTINVKILSLNPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVEGDIVQ 590 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIK 690 I ++GAF+ + G +GL+HIS+I+ RVE + L +G V K+LE+D+ + RI LSIK Sbjct: 591 IKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIGDNVEAKILEIDKDRRRISLSIK 650 Query: 691 EATEQSQP 698 + + Sbjct: 651 ALIDPPEQ 658 Score = 65.7 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGE----KAKHAIRRIEEITAEIEVGRVYTGKVT 630 + +I + V + E + + IE+ + G + G + Sbjct: 271 TTIGVVASASAPGQIIREVMVIMNENQNETTGNEMLELMDEIEKSMKSPKTGEIVEGVID 330 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSI 689 I D V +G K+G++ S++A + + + D +G E+ KVL+ D G I LS Sbjct: 331 AINDKEIVVNLGCKKDGIIPNSEVALEEGQTIRDLFSVGDEIQAKVLKTDDGDGSILLSR 390 Query: 690 KEAT 693 ++ Sbjct: 391 RKME 394 >UniRef50_Q55BB0 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q55BB0_DICDI Length = 217 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 82/217 (37%), Gaps = 10/217 (4%) Query: 329 VRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVG 388 ++ GV+ + GS+ T+ L T+ R Q + T + +S Sbjct: 1 MKIGVVSQGSGSSYVEMENTKVLC--TIHGPRATQKTELF---ETAKLNCELKYTTFSST 55 Query: 389 ETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNGSSSMASVCGAS 447 + +E L + ++ + ++K+P T + + + +G+ +AS+ A+ Sbjct: 56 TEKIDYVENSKEKDLSLLISQSIIGSI-RLEKYPKTAIDIYILVLNDDGNVLVASITAAT 114 Query: 448 LALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQM 507 +AL DAGV + V+ ++ K+ + + + + S + I+ + Sbjct: 115 MALADAGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQIIQ 174 Query: 508 DIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 +++ + ++ I +M+Q + Sbjct: 175 TGELQ---YTNVLECVDLCIDGCDKIYSIMKQNLIDS 208 Score = 73.4 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 17/212 (8%) Query: 18 LETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF--FPLTVN--YQERTYAAGRI 73 ++ G+++ Q + + V M++T V T+ G + + + F L Y + +I Sbjct: 1 MKIGVVS-QGSGSSYVEMENTKVLCTIHGPRATQKTELFETAKLNCELKYTTFSSTTEKI 59 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIG 133 +E + LI++ I IR + + + V++ + V + ++ Sbjct: 60 DYVENSKE---KDLSLLISQSIIGSIR--LEKYPKTAIDIYILVLNDDGNVL--VASITA 112 Query: 134 ASAALSLSGIPFNGPIGAARVGY-INDQYVLNP-TQDELKESKLDLVVA--GTEAAVLMV 189 A+ AL+ +G+ + + V +++ +++P T +E S ++VA + + + Sbjct: 113 ATMALADAGVEMFDMVSSCSVSCTKDNRTLIDPTTLEETIPSSSTVLVAKMPSLNEITQI 172 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINE 221 + L +L V + + + + Sbjct: 173 -IQTGELQYTNVLECVDLCIDGCDKIYSIMKQ 203 >UniRef50_B3S9X0 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S9X0_TRIAD Length = 240 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 19/233 (8%) Query: 326 GLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPY 385 L RTG + + GSA T+ + +V + T F + Sbjct: 13 RLVCRTGAVSQAVGSAYIELRNTKIICAVYGP----REVAKKQEFNIQATVACELKFATF 68 Query: 386 SVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCG 445 S +E + ++ + + V+ + + + +++GS ++ Sbjct: 69 SCR-RRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGGAITA 127 Query: 446 ASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHL-----------GDMDFK 494 AS+AL D+G+ I I L + GD ++ L +E L ++ Sbjct: 128 ASVALADSGIEIFD--VAIGCCLRQIGDLSLIDPTYLEEEGRLNNEEEDEIVTNANVTIA 185 Query: 495 VAGSRDGISALQMDIKIE-GITKEIMQVALNQAKGARLHILGVMEQAINAPRG 546 + S + +SAL M+ +++ T+ I++ L + + +++ Sbjct: 186 LLPSLNQVSALIMNGELDVDSTQRIIKDCLEGCIRIYPVVRECLTKSLEEKMS 238 Score = 74.2 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 15/162 (9%) Query: 20 TGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF---FPLTVNYQERTYAAGRIPGS 76 TG ++ QA + + + +T + V G ++ Q+F + + T++ R Sbjct: 18 TGAVS-QAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVACELKFATFSCRR---- 72 Query: 77 FFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNPDIVAMIGA 134 RR E +++I + ++P+ + +++ + TV+ + V A+ A Sbjct: 73 --RRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVLGG--AITAA 128 Query: 135 SAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLD 176 S AL+ SGI + I D +++PT E +E +L+ Sbjct: 129 SVALADSGIEIFDVAIGCCLRQIGDLSLIDPTYLE-EEGRLN 169 >UniRef50_C6PXA3 RNA binding S1 domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXA3_9CLOT Length = 388 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 11/197 (5%) Query: 516 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV 575 + ++ A + + V++ + I F P + +K IGK Sbjct: 105 WDELKKAFEEKSDVETTVKEVVKGGVVTYINGIRAFIPASQLSLSYVEDLKSFIGK---- 160 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 T IE + D + + + A + + + I+ G +G V+R+ F Sbjct: 161 -----TLTVKVIEFDKDKEKVVLSRKVIEKAEAEEKKQHLLNSIKPGEKRSGVVSRLAKF 215 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATE 694 GAFV +G G +GL+H+S+++ KRV D + +G +V V +L VD++ +I L++K+ E Sbjct: 216 GAFVDLG-GVDGLIHVSELSWKRVNNPADVVSVGDKVEVYILSVDKENNKIALALKDVNE 274 Query: 695 QSQPAAAPEAPAAEQGE 711 + + + E Sbjct: 275 NPWESVGNKFKIGDVVE 291 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 + + +K+ K+ +V L++ + + +N+ Sbjct: 140 FIPASQLSLSYVEDLKSFIGKTLTVKVIEFDKDKEKVVLSRKVIEKAEAEEKKQHLLNSI 199 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDGTVKIAA 599 + K D+ G G + + + D V I + Sbjct: 200 KPGEKRSGVVSRLAKF--GAFVDLGGVDGLIHVSELSWKRVNNPADVVSVGDKVEVYILS 257 Query: 600 TDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 D E K A E + + ++G V G+V ++ FGAFV I G EGLVHIS Sbjct: 258 VDKENNKIALALKDVNENPWESVGNKFKIGDVVEGEVLKLASFGAFVEIQPGVEGLVHIS 317 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAP 702 +I+++R+ K +D L +G +V VK+L++D ++ RI LSIK+A E+ + Sbjct: 318 EISEERIAKPSDVLNLGDKVRVKILDIDNKENRISLSIKDAVEKPKEDLDK 368 Score = 64.6 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 D K + IE I G V GK+ + + A V IG +G++ S++ + Sbjct: 6 KDTNSMKEFMEDIESSMKSIRRGEVVKGKIISVTENHAIVNIGYMSDGILSKSEVVENEE 65 Query: 660 EKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATE-QSQPAAAPEAPAAEQGE 711 + ++D L+ +E+ V VL++ D +G + LS K A + ++ E Sbjct: 66 DNLSDILKENEEIYVYVLDMNDGEGNVLLSKKAADKIKAWDELKKAFEEKSDVE 119 Score = 42.6 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 9/200 (4%) Query: 505 LQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDK 564 + +IK KE M+ + K R + + I I + Sbjct: 1 MTEEIKDTNSMKEFMEDIESSMKSIRRGEVVKGKIISVTENHAIVNIGYMSDGILSKSEV 60 Query: 565 IKDVIGKGGSVIRALTEETGTTIEIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGR 623 +++ +++ E +++ D +G V ++ +K K +E+ E Sbjct: 61 VENEEDNLSDILKENEEIYVYVLDMNDGEGNVLLSKKAADKIKA----WDELKKAFEEKS 116 Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG 683 V +V G I G + SQ++ VE + + +G+ + VKV+E D+ Sbjct: 117 DVETTVKEVVKGGVVTYI-NGIRAFIPASQLSLSYVEDLKSF--IGKTLTVKVIEFDKDK 173 Query: 684 -RIRLSIKEATEQSQPAAAP 702 ++ LS K + Sbjct: 174 EKVVLSRKVIEKAEAEEKKQ 193 >UniRef50_A6TRF8 RNA binding S1 domain protein n=2 Tax=Alkaliphilus RepID=A6TRF8_ALKMQ Length = 383 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 13/220 (5%) Query: 495 VAGSRDGISALQMDIKIEGIT--KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFA 552 + + DG + + K T E ++ + ++ ++ + A I F Sbjct: 76 IIKTDDGEGNVLLSTKRVEHTKGWEDLEKIHDTESLVESKVVESVKGGVIAIARGIRCFI 135 Query: 553 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRI 612 P D +K +GK IEI+ + + + + Sbjct: 136 PASQLSDRYVDDLKTFVGKS---------FNAKVIEIDRQKNKAVLSRKEVLQQENKEKK 186 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 ++ A++E G G+V R+ +FGAFV IG G +GLVHIS+++ RV+ ++ + + +V Sbjct: 187 ADVFAKLEKGMQIRGEVKRLTNFGAFVDIG-GIDGLVHISELSWGRVKNPSEVVSVEDQV 245 Query: 673 PVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 VKV++ D G++ LSIK+ + A + A + E Sbjct: 246 EVKVIDFDETTGKVSLSIKQTQPEPWTLIADKFKAGDILE 285 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 15/228 (6%) Query: 495 VAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR 554 + K+ I ++ + L++ + + + Sbjct: 144 YVDDLKTFVGKSFNAKVIEIDRQKNKAVLSRKEVLQQENKEKKADVFAKLEKGMQIRGEV 203 Query: 555 IHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI 609 D+ G G + + + +ED VK+ D K ++ Sbjct: 204 KRLTNF--GAFVDIGGIDGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGKVSL 261 Query: 610 -------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 I + + G + GKV R+VDFGAFV + G +GLVHISQI++ + K Sbjct: 262 SIKQTQPEPWTLIADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHIAKP 321 Query: 663 TDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 ++ L +GQ V VKVL+++ RI LS+ A E S E + Sbjct: 322 SEELHVGQNVNVKVLDINIDGKRISLSMTAAQEDSTENEPTEYTDEDN 369 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + IE+ + G V TGKV ++ D G V IG +G+V +I++ D Sbjct: 5 MEELMEEIEKSLIRPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDEISNDPTITPQD 64 Query: 665 YLQMGQEVPVKVLEVDR-QGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 + E+ V +++ D +G + LS K + E Sbjct: 65 VAKADDEISVYIIKTDDGEGNVLLSTKRVEHTKGWEDLEKIHDTESLVE 113 >UniRef50_Q5CPV0 Archeo-eukaryotic exosomal RNAse n=2 Tax=Cryptosporidium RepID=Q5CPV0_CRYPV Length = 351 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 7/201 (3%) Query: 305 VRSRVLAGEPRIDGREKDMIRGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD 361 + V R DGR+ IR + G+ F +G+ + +V+ +G Sbjct: 89 MNEIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSI-VGPVPI 147 Query: 362 AQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 + ++ ++ P+S + G R I G + R +V+ Sbjct: 148 SGNINYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVI-CDQYS 206 Query: 422 PYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDI 481 + + I E +GS A++ S+AL +G+ +K + GL + Y Sbjct: 207 KSQIIINIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQVLY--DLTQ 264 Query: 482 LGDEDHLGDMDFKVAGSRDGI 502 E G + + + + I Sbjct: 265 SEMESLKGTLLMAIHSTDNDI 285 Score = 69.2 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 63/168 (37%), Gaps = 16/168 (9%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP------LTVNYQERTYAAGRIPGSFFRRE 81 V + V++VG ++ + N++ +++ R+ Sbjct: 125 DGNVYFEQGQNKLIVSIVGPVPISGNINYTNNNSGVQINCNFRVSPFSSQD-----RRKR 179 Query: 82 GRPSEGETLIARLIDRPIRPLF-PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSL 140 G+ +I R + + +++ + ++ + V A+ S AL++ Sbjct: 180 GKNDRFCIESGLIISRTFSSVICDQYSKSQIIINIIILEGDGSVRS--AAINATSIALAI 237 Query: 141 SGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAV 186 SGI I +A G Q + + TQ E++ K L++A T+ + Sbjct: 238 SGISMKDLIVSATCGLYGKQVLYDLTQSEMESLKGTLLMAIHSTDNDI 285 >UniRef50_Q67NT8 30S ribosomal protein S1 n=1 Tax=Symbiobacterium thermophilum RepID=Q67NT8_SYMTH Length = 441 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 99/258 (38%), Gaps = 16/258 (6%) Query: 463 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 522 I + + + + + L+++ G + L +D K EG + + A Sbjct: 70 SIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVLSVDTKGEGGLRISKRRA 129 Query: 523 --------LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 + + A I + +A+ + +++ + D+ G Sbjct: 130 DEQLAWAEVERKFEAGEVIEAEVTEAVKGGLVVDLGLRAFLPASQVDRGYVADLSKFVGQ 189 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 IR IE++ I + E + ++ G V G V I D Sbjct: 190 KIRV------KIIELDPYKGRVILSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITD 243 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 FGAF+ +G G +GL+HIS+++ R++ + + G+ + VKVL +D +G++ L +K+ Sbjct: 244 FGAFIDLG-GVDGLLHISEMSYGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLKQVL 302 Query: 694 EQSQPAAAPEAPAAEQGE 711 + + P E Sbjct: 303 PDPWDSVEEKYPEGAIVE 320 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 16/182 (8%) Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SVI 576 + +R +L A + + + I GG + Sbjct: 204 RVILSRKQVLEAERTAARERFWSTVQEGDVLEGTVKSITDFGAFIDLGGVDGLLHISEMS 263 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKV 629 + + + VK+ D EK K ++ + + + G + G V Sbjct: 264 YGRIKHPSQVVSEGERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEGTV 323 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 R+ FGAFV + G +GL+HISQ+AD+R+ + + +G V VKV+ VD + RI LS Sbjct: 324 ARLTTFGAFVELEPGVDGLIHISQMADRRINNPGEVVSIGDVVKVKVINVDAQNRRISLS 383 Query: 689 IK 690 ++ Sbjct: 384 LR 385 Score = 70.0 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDY-LQMGQEVPVKVL 677 + G + G+V R+ D V +G EG++ +++++ + + D L++G EV V VL Sbjct: 53 PKPGDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVL 112 Query: 678 EVDRQG----RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 VD +G RI + + + + A E E Sbjct: 113 SVDTKGEGGLRIS-KRRADEQLAWAEVERKFEAGEVIE 149 >UniRef50_A8ZTA2 Ribosomal protein S1 n=22 Tax=Deltaproteobacteria RepID=A8ZTA2_DESOH Length = 604 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 99/268 (36%), Gaps = 25/268 (9%) Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 V+G+ + VK G + V L D + + D + D K+ + Sbjct: 127 VSGVIINRVKGGFSVDV---GLQAFLPGSQADLRPIRNFDEMVGQTYDFKVLKYNRRRNN 183 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG------- 573 + L+ R +L A + + I N + + GG Sbjct: 184 IVLS-----RRVLLEETLATKRAELMETLADGQVVEGIVKNITEYGVFVDLGGIDGLLHI 238 Query: 574 -SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVY 625 + + D+ T+K+ + D +K K ++ E + VG Sbjct: 239 TDISWGRVRHPSELFTVGDNVTLKVLSFDLDKKKISLGMKQLTPDPWESAAEKYPVGVKT 298 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QG 683 TGKV I ++G FV + G EGL+H+S+I+ R + + + +G+EV VL++ Sbjct: 299 TGKVVSITNYGIFVELEEGVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNR 358 Query: 684 RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RI L +K+ + + P E Sbjct: 359 RISLGMKQVEPNPWEVISEKYPVGTVIE 386 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 21/215 (9%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS-- 574 E + + + I M+Q P ISE P I+ I D G Sbjct: 344 EEVDAVVLDIQPGNRRISLGMKQVEPNPWEVISEKYPVGTVIEGRIKNITDFGLFIGIDD 403 Query: 575 ------VIRAL-----TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEIT 616 I + + + D + D + ++ E + Sbjct: 404 DIDGLVHISDISWTKRIKHPSEIYKKGDLVRAVVLEIDKANERFSMGIKQLESDPWESVR 463 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 +G +G VT + DFG FV + G EGLVH+S+++ +R++ ++G E+ +V Sbjct: 464 DRYPIGTKVSGVVTNVTDFGIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARV 523 Query: 677 LEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + V+ + +I LSIK + + +G Sbjct: 524 MNVNADERKIGLSIKRLDVEDDKTLLKDYVDNSRG 558 >UniRef50_D2R4L6 Ribosomal protein S1 n=7 Tax=Planctomycetales RepID=D2R4L6_9PLAN Length = 600 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 26/282 (9%) Query: 451 MDAGVPIKAAV--AGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 +DA + + + G V +L DI G L + D D Sbjct: 119 LDAWKEMMDRIKEGQVVTGTVSRKIKGGLLVDIEGVNVFLPASQVDIRRPAD-----IGD 173 Query: 509 IKIEGITKEIMQ--VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK 566 + E+++ A +R ++ + E + N + Sbjct: 174 YIGRTVQCEVLKIDEARRNIVVSRRSLIERQREEDREALLKELEIGQVRKGVVKNIAEFG 233 Query: 567 DVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RR 611 + GG + + I+ + V + D EK K A+ Sbjct: 234 AFVDLGGIDGLLHITDMSWERIGHPSEMVAIDQEIEVMVLHIDREKKKIALGLKQKEGNP 293 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQ 670 ++ + VG V G V ++ +GAFV + G EGLVHIS+++ +RV ++ + +G Sbjct: 294 WADVDTKYPVGTVVKGSVVNVMSYGAFVKLEPGIEGLVHISEMSWTRRVNHPSELVNIGD 353 Query: 671 EVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 E+ V +L VD+ G ++ L +K+ E A + P E Sbjct: 354 EISVVILGVDKDGQQLSLGMKQTQENPWTRVAEKYPVDTIVE 395 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 23/217 (10%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----K 571 + ++V + + I ++Q P D+ P +K + + Sbjct: 266 QEIEVMVLHIDREKKKIALGLKQKEGNPWADVDTKYPVGTVVKGSVVNVMSYGAFVKLEP 325 Query: 572 GGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEIT 616 G + ++E + I D+ +V I D + + + + Sbjct: 326 GIEGLVHISEMSWTRRVNHPSELVNIGDEISVVILGVDKDGQQLSLGMKQTQENPWTRVA 385 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVK 675 + V + GKV + ++GAFV + G +GL+H+S ++ R + ++ L+ GQ V K Sbjct: 386 EKYPVDTIVEGKVRNLTNYGAFVELEEGIDGLLHVSDMSWTRKISHPSEMLEKGQPVRCK 445 Query: 676 VLEVD-RQGRIRLSIKEATEQSQ-PAAAPEAPAAEQG 710 +L VD + RI L +K+ E + + Sbjct: 446 ILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVV 482 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIE--------EITAEIEVGRVYTGKVTR 631 +E KI + D E+ + A+ + +I + + G+V +G VT+ Sbjct: 429 ISHPSEMLEKGQPVRCKILSVDQERRRIALGLKQLDEDPWARDIPGKYQPGQVVSGAVTK 488 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 I +FG FV + G EGL+HIS++AD +VE D +++G ++ VK+L VD + +I LS K Sbjct: 489 ITNFGVFVGLEDGLEGLLHISELADHKVENPEDVVKVGDKIDVKILRVDIDERKIGLSRK 548 Query: 691 EAT 693 Sbjct: 549 RVE 551 Score = 69.2 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 7/138 (5%) Query: 566 KDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVY 625 + + G ++R L E+ +DG + + K + +E+ I+ G+V Sbjct: 79 GEEPPQVGQLVRVLIEDLEDETAAPEDGGMVRISKRKAKK---LDAWKEMMDRIKEGQVV 135 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR- 684 TG V+R + G V I G + SQ+ +R + DY +G+ V +VL++D R Sbjct: 136 TGTVSRKIKGGLLVDIE-GVNVFLPASQVDIRRPADIGDY--IGRTVQCEVLKIDEARRN 192 Query: 685 IRLSIKEATEQSQPAAAP 702 I +S + E+ + Sbjct: 193 IVVSRRSLIERQREEDRE 210 >UniRef50_C8WX93 RNA binding S1 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WX93_ALIAD Length = 385 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 12/194 (6%) Query: 516 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV 575 E MQ L + + I V++ + A G I ++ ++++ G Sbjct: 94 WERMQQLLESGEPIEVEIRDVVKGGLVADVGVR----AFIPASLVDRHFVENLEQFKGQK 149 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 +RA IE++ I + + + R ++ E++ G V G V R+ DF Sbjct: 150 LRA------KVIEVDPQKNKLILSRRAVLEEESEARARKLFEELKPGDVIEGTVQRLTDF 203 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATE 694 GAFV +G G +GLVHIS+++ V ++ ++ G V V+VL VD + GRI LSIK A Sbjct: 204 GAFVDVG-GADGLVHISELSFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALP 262 Query: 695 QSQPAAAPEAPAAE 708 + A E + Sbjct: 263 EPWETYAHEFQPGD 276 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-SVIRALTE- 581 N+ +R +L +A + + I + GG + ++E Sbjct: 162 NKLILSRRAVLEEESEARARKLFEELKPGDVIEGTVQRLTDFGAFVDVGGADGLVHISEL 221 Query: 582 ------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGK 628 + D V++ D E + ++ E E + G V G Sbjct: 222 SFSHVNHPSEVVREGDRVKVRVLRVDPEAGRISLSIKAALPEPWETYAHEFQPGDVVQGV 281 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 V R+VDFGAFV + G EGLVH+SQI+++ V+K +D LQ GQEV V+VL VD + RI L Sbjct: 282 VRRVVDFGAFVELRPGLEGLVHVSQISNEHVDKPSDVLQPGQEVTVRVLSVDPERKRISL 341 Query: 688 SIKEATE 694 S++++++ Sbjct: 342 SMRDSSQ 348 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 616 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS--QIADKRVEKVTDYLQMGQEVP 673 A + G V TG+VT + D G VA+ G EG HIS +++ +D + +G V Sbjct: 11 DAAVREGDVVTGEVTAVDDHGVTVALPHGYEG--HISPQELSAVPGTHPSDVVSVGSTVT 68 Query: 674 VKVLEVD-RQGRIRLS-IKEATEQSQPAAAPEAPAAEQGE 711 +VL+VD G + LS + + + E E Sbjct: 69 AQVLKVDMESGHVTLSKRRAEQASAWERMQQLLESGEPIE 108 >UniRef50_C5KIM5 Exosome complex exonuclease RRP41, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIM5_9ALVE Length = 248 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 15/251 (5%) Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 + + R+DGR + +R L ++ G P GSA +G T+ + A + Sbjct: 5 QEFLTYEGFRLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASV 64 Query: 366 DELMG----ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKF 421 G + Y ++ + + R +R + + + F Sbjct: 65 GRAAGTMARQGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAV-LTEMF 123 Query: 422 PYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 P + + V I + +GS+ A V A+ AL+DAG+PIK + +GLV +N + D Sbjct: 124 PKSCIDVHLTILQEDGSALAACVNAAAAALVDAGIPIKDMFSACTVGLV---NNQKPIVD 180 Query: 481 ILGDEDHLGD---MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 + E + V R ++ L ++ KI + + A + A + + M Sbjct: 181 LNHAESEGCGGAVVTVAVYQRRKELNYLCLEGKINIES---FESAADLAIEGAVTAVRAM 237 Query: 538 EQAINAPRGDI 548 I + Sbjct: 238 RTFIQEDGLEK 248 Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 30/236 (12%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP-----------GQDFFPLTVN 62 +TL+ G A A + + T V V G + + Q + V Sbjct: 24 RHLTLKIGD-APSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMARQGEAIVNVV 82 Query: 63 YQERTYAA-GRIPGSFFRREGRPSEGETLIARLI-DRPIRPLFPEGFVNEVQVIATVVSV 120 Y+ ++A R + R +E + + R+I D + +FP+ + V T++ Sbjct: 83 YRTSSFATIDRKRRTTGDRNS--TERQLWLQRIIQDAVLTEMFPKSC---IDVHLTILQE 137 Query: 121 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ-YVLNPTQDELKESKLDLVV 179 + V A+ +GIP A VG +N+Q +++ E + +V Sbjct: 138 DGSALAACVNAAAAAL--VDAGIPIKDMFSACTVGLVNNQKPIVDLNHAESEGCGGAVVT 195 Query: 180 AGTEA-----AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPR 230 L +E ++ + A E ++ + ++E G + Sbjct: 196 VAVYQRRKELNYLCLEG---KINIESFESAADLAIEGAVTAVRAMRTFIQEDGLEK 248 >UniRef50_B0VI92 30S ribosomal subunit protein S1 (Modular protein) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI92_9BACT Length = 932 Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 18/258 (6%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGD--MDFKVAGSRDGISALQMDIKIEGITKEIMQVALN 524 G+++ ++ D+LG E L M K + D ++ K+ I +E + L+ Sbjct: 202 GIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGKELYFKVVNIDEEHHNIILS 261 Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRAL 579 + + Q + +E + I I D+ G G + Sbjct: 262 R-RQVLEEEAEQKRQELLRKIQIDAELDGEVKNITQYGAFI-DLGGIDGLLHLTDMSWGK 319 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 ++I D VK+ D E + ++ E I + G TGKV + Sbjct: 320 LNHPSEMLQIGDKVKVKVINFDPETNRISLGMKQLVPHPWENIEIKYPEGSRVTGKVVNL 379 Query: 633 VDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 FGAFV + G EGLVHIS+++ K++ +L++G+ + VL++D++ RI L +K Sbjct: 380 KPFGAFVELEPGVEGLVHISEMSWTKKITDAHKFLKIGETINAIVLDIDKENKRISLGMK 439 Query: 691 EATEQSQPAAAPEAPAAE 708 + P Sbjct: 440 QMEPNPWLTIEDRYPIGT 457 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 11/198 (5%) Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 I E ++ A I ++ + I F P + IGK Sbjct: 185 INIERIKQAFADKSSLSGIIRRRVKGGMIVDVLGIEAFLPGSQMSLKPIPNLDQFIGK-- 242 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 E + I+++ I + + A ++ +E+ +I++ G+V I Sbjct: 243 -------ELYFKVVNIDEEHHNIILSRRQVLEEEAEQKRQELLRKIQIDAELDGEVKNIT 295 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEA 692 +GAF+ +G G +GL+H++ ++ ++ ++ LQ+G +V VKV+ D + RI L +K+ Sbjct: 296 QYGAFIDLG-GIDGLLHLTDMSWGKLNHPSEMLQIGDKVKVKVINFDPETNRISLGMKQL 354 Query: 693 TEQSQPAAAPEAPAAEQG 710 + P + Sbjct: 355 VPHPWENIEIKYPEGSRV 372 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 22/196 (11%) Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGGSVIRALTE--------ET 583 M+Q + P +I P + +K G + ++E + Sbjct: 351 MKQLVPHPWENIEIKYPEGSRVTGKVVNLKPFGAFVELEPGVEGLVHISEMSWTKKITDA 410 Query: 584 GTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFG 636 ++I + + D E + ++ I +G + T K+ + FG Sbjct: 411 HKFLKIGETINAIVLDIDKENKRISLGMKQMEPNPWLTIEDRYPIGTILTRKIKSLTAFG 470 Query: 637 AFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 694 AFV I G +GL+HIS I+ KR+ + + QEV VL +DR Q R+ L +K+ Sbjct: 471 AFVEIEEGIDGLIHISDISWTKRIYHPREVYKKNQEVEAVVLSIDRAQHRVALGVKQLVP 530 Query: 695 QSQPAAAPEAPAAEQG 710 P + Sbjct: 531 DPWETLDQSLPINTEV 546 Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 11/138 (7%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 + + + + D + + A+ E + + + GK+ Sbjct: 492 KRIYHPREVYKKNQEVEAVVLSIDRAQHRVALGVKQLVPDPWETLDQSLPINTEVKGKIG 551 Query: 631 RIVDFGAFVAIGGG---KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIR 686 +++ G V I EG V +S +A ++E D +G+E+P+KV+E+D R+ Sbjct: 552 KLIPKGVLVDIPVNNDVVEGFVPVSHLAIPKLEHSEDAFYIGEEIPLKVIELDMENRRLI 611 Query: 687 LSIKEATEQSQPAAAPEA 704 LS+K P E Sbjct: 612 LSVKAFFFSRDPKLQEEY 629 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 7/99 (7%) Query: 596 KIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 K + ++ + + EE + + G + G V I D V IG EG++ IS+ A Sbjct: 90 KELTQEEKEHQEMLSMYEESFSSFKKGEIIEGTVVDITDKDVRVDIGFKSEGIIPISEFA 149 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 + ++ + V + E++ +G++ LS K+A Sbjct: 150 YTGIPELNSV------IKVYINEIENGEGKLLLSKKKAD 182 >UniRef50_B3WE79 30S Ribosomal protein S1 n=52 Tax=Firmicutes RepID=B3WE79_LACCB Length = 439 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + + ++D+ G E IEIE I + +E Sbjct: 142 VPASMVEDHFVEDLSQYKGK------ELEFKIIEIEPSENRLILSHRAIVEASKAEARKE 195 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I A+I+ G GKV R+ +FGAFV +G G +GLVH+S+I+ V+K +D L++GQE+ V Sbjct: 196 IFAKIQPGDTVEGKVARLTNFGAFVDLG-GVDGLVHVSEISFDHVDKPSDVLKVGQEIKV 254 Query: 675 KVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 KVL VD + RI LSIK Q +APA Sbjct: 255 KVLNVDPDRNRISLSIKATLPQPWDDIEEKAPAGSV 290 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 102/273 (37%), Gaps = 22/273 (8%) Query: 449 ALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 A +AG I A V + G + EDH + + G +++ Sbjct: 112 AKYEAGETITAPVTSVVKGGLVVNAGVRGFVPASMVEDHFVEDLSQYKGK-------ELE 164 Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 KI I ++ L+ ++ + + D+ Sbjct: 165 FKIIEIEPSENRLILSHRAIVEASKAEARKEIFAKIQPGDTVEGKVARLTNF--GAFVDL 222 Query: 569 IGKGG-----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEIT 616 G G + ++ +++ + VK+ D ++ + ++ ++I Sbjct: 223 GGVDGLVHVSEISFDHVDKPSDVLKVGQEIKVKVLNVDPDRNRISLSIKATLPQPWDDIE 282 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 + G V TG V R+ FGAFV + G EGLVHISQI+ + V D L+ GQEV VKV Sbjct: 283 EKAPAGSVLTGTVKRLTTFGAFVEVFPGVEGLVHISQISHEHVATPADVLKEGQEVQVKV 342 Query: 677 LEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 L VD R+ LSIK E+ + Sbjct: 343 LSVDPDAHRLALSIKALQERPAGSEEESHEGGN 375 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 16/186 (8%) Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 + + + + + P D I DV G + + G + Sbjct: 33 VLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVVLSTVGKD---K 89 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 ++G ++ E K +EI A+ E G T VT +V G V G G V Sbjct: 90 ENGQFLLSKRRLEAQKV----WKEIQAKYEAGETITAPVTSVVKGGLVVN--AGVRGFVP 143 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAP----EAP 705 S + D VE ++ Y G+E+ K++E++ + R+ LS + E S+ A + Sbjct: 144 ASMVEDHFVEDLSQY--KGKELEFKIIEIEPSENRLILSHRAIVEASKAEARKEIFAKIQ 201 Query: 706 AAEQGE 711 + E Sbjct: 202 PGDTVE 207 Score = 56.9 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 +++G V + D V I G G EG+V I +++ + ++ + D ++G ++ + V Sbjct: 22 TVKIGDTVKADVLAVEDKQLIVGIEGTGVEGVVPIKELSTQPIDDIHDVAKVGDKLDLVV 81 Query: 677 LEVD----RQGRIRLSIKEAT-EQSQPAAAPEAPAAEQG 710 L G+ LS + ++ + A E Sbjct: 82 LSTVGKDKENGQFLLSKRRLEAQKVWKEIQAKYEAGETI 120 >UniRef50_B6KQ03 3' exoribonuclease, putative n=3 Tax=Toxoplasma gondii RepID=B6KQ03_TOXGO Length = 303 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 20/246 (8%) Query: 311 AGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMG 370 R DGR + +R + ++T L GSA + G+T+ + Sbjct: 43 NKRERHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNM-----KHAS 97 Query: 371 ERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSE 430 + + + F P++ TG +R L + + AV+ T+ V Sbjct: 98 QDRGSINLEFRFAPFAT--TGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVL 155 Query: 431 ITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEG-----DNYVVLSDILGDE 485 + E +G A++ LAL DAG+ + V G + + G VL D +E Sbjct: 156 VLEDDGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEE 215 Query: 486 DHL------GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 +D + + + + + E + L + A + + Sbjct: 216 RRAFADKNCTFVDLGYCPALASVCFIHASGTL--LATESGEQMLRLCEAACYAVADEVRS 273 Query: 540 AINAPR 545 + Sbjct: 274 CLRRSF 279 Score = 58.8 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 29/250 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK--AKPGQDFFPLTVNYQERTYAAG 71 + ++T +A A + VS+ T + V G + QD + + ++ +A Sbjct: 57 RAMCMQTHSLA-AAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGSINLEFRFAPFA-- 113 Query: 72 RIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAM 131 + + + L L+ + + + + + +V+ + A+ Sbjct: 114 ----TTGKDACSERDTAHLTT-LLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAAL 168 Query: 132 IGASAALSLSGIPFNGPIGAA-----RVGYINDQY----VLNPTQDE-----LKESKL-D 176 AL+ +GI + A VG+ + +L+P +E K D Sbjct: 169 TCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADKNCTFVD 228 Query: 177 LVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAG----KPRWD 232 L A+V + + LL+ + + V + ++ + + + D Sbjct: 229 LGYCPALASVCFIHASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCLRQEEKRD 288 Query: 233 WQPEPVNEAL 242 + L Sbjct: 289 RETPQAPVNL 298 >UniRef50_A3DDC0 Hydroxymethylbutenyl pyrophosphate reductase n=7 Tax=Clostridiales RepID=A3DDC0_CLOTH Length = 694 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 11/197 (5%) Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 + + + A +++ V++ + A + F P + + Sbjct: 386 SWDDIVKAYENKTPVNAYVVEVVKGGVIASYKGVRIFVPASQVSDRYVKDLNEF------ 439 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 + R++T +E+ + + + + +EVG+V+ G V + D Sbjct: 440 LKRSITVRI---LELNEKRRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTD 496 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 FGAFV IG G +GL+HIS+++ RV+ ++ L++G EV V VLE D + ++ L ++ Sbjct: 497 FGAFVDIG-GVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKKKVSLGYRKME 555 Query: 694 EQSQPAAAPEAPAAEQG 710 + + + Sbjct: 556 DNPWYKIEEKYKVGDVV 572 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 547 DISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDGTVKIAATD 601 ++ + + D+ G G + + +++ D+ V + D Sbjct: 482 EVGKVFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFD 541 Query: 602 GEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 EK K ++ +I + +VG V V R FGAFV + G +GLVHISQI Sbjct: 542 KEKKKVSLGYRKMEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQI 601 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + KR+ KV D L++G +V K++EVD +I LSIKE P++ E+ A + E Sbjct: 602 SSKRLAKVEDALEIGMKVDAKIIEVDGENKKISLSIKEVMPIDPPSSKSESKAKDGSE 659 >UniRef50_C0GDV0 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDV0_9FIRM Length = 678 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 13/245 (5%) Query: 468 LVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 ++ EGD + G E ++ K ++G L ++ A + Sbjct: 338 VILEGDQMLADVMENGQE---VEVAVKKVDDQEGRIILSRKAIERKQKWAELEKAFEEGT 394 Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTI 587 + + + G + + ++ I D G E + I Sbjct: 395 ILSGKVKEAVPAGLVVELGGGYD--AFMPGSLVDVRYIPDFNEFQGQ------EISFKII 446 Query: 588 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 E+ + I + + A + +++ AE+E G++ G V R+ +FGAFV +G G +G Sbjct: 447 EMRPEKEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVG-GIDG 505 Query: 648 LVHISQIADKRVEKVTDYLQMGQEVPVKVLE-VDRQGRIRLSIKEATEQSQPAAAPEAPA 706 LVHIS+I+ R++ + L +G E+ VKV+E + + RI LS+++A + A Sbjct: 506 LVHISEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFSA 565 Query: 707 AEQGE 711 + E Sbjct: 566 GDVVE 570 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 24/259 (9%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGD---MDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 I G VKE ++ ++ G D +D + + ++ KI M+ Sbjct: 395 ILSGKVKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEFQGQEISFKI-----IEMR 449 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG------- 573 + +R +L E I + GG Sbjct: 450 PEKEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVGGIDGLVHI 509 Query: 574 -SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVY 625 + + G + + D+ VK+ E+ + + E+ + G V Sbjct: 510 SEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFSAGDVV 569 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-R 684 GKVTRIVDFGAFV + G EGLVHISQ+A+ V++ ++ +Q G V VK+L+++ G R Sbjct: 570 EGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKVKILDINTDGKR 629 Query: 685 IRLSIKEATEQSQPAAAPE 703 + LS+++A + + + Sbjct: 630 VSLSMRDAAPRPKKEQTRQ 648 Score = 71.9 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 13/197 (6%) Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEET 583 Q + + +++ + + ++ + + VI + Sbjct: 287 EQTATEEVSLDQEIKEFSAGDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVILEGDQML 346 Query: 584 GTTIEIEDDGTVKIAATDGEKAK--------HAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 +E + V + D ++ + ++ E+ E G + +GKV V Sbjct: 347 ADVMENGQEVEVAVKKVDDQEGRIILSRKAIERKQKWAELEKAFEEGTILSGKVKEAVPA 406 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATE 694 G V +GGG + + S + + + ++ GQE+ K++E+ + ++ LS K+ E Sbjct: 407 GLVVELGGGYDAFMPGSLVDVRYIPDFNEF--QGQEISFKIIEMRPEKEKLILSRKQVLE 464 Query: 695 QSQPAAAPEAPAAEQGE 711 + AA + + E Sbjct: 465 E--EAAVQKDKVLAELE 479 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 I K E+ +++ E G V TG V ++ D V IG EG+ Sbjct: 273 IGKMENEKNTELQEEQTATEEVSLDQEIKEFSAGDVVTGTVVQVSDDEVLVDIGYKSEGV 332 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQS-QPAAAPEAPA 706 + ++ + + + D ++ GQEV V V +V D++GRI LS K + Sbjct: 333 LPRQEVILEGDQMLADVMENGQEVEVAVKKVDDQEGRIILSRKAIERKQKWAELEKAFEE 392 Query: 707 AE 708 Sbjct: 393 GT 394 >UniRef50_Q9RU11 Ribonuclease PH n=2 Tax=Deinococcus RepID=RNPH_DEIRA Length = 246 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 36/232 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAA 70 V+++ G + A + + M T + TV K P G+ LT Y Sbjct: 18 RPVSVQRG-VNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEYSM----- 71 Query: 71 GRIPGSFFRREGRPSE----GETLIARLIDRPIRPLFP-EGFVNEV-QVIATVVSVNPQV 124 +P S R+ R I RL+ R +R F N+ V V+ + Sbjct: 72 --LPRSTTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGGT 129 Query: 125 NPDIVAMIGASAALS-----------LSGIPFNGPIGAARVGYINDQYVLNPTQDELKES 173 + +++ AAL LS P +GA VG I D+ ++ +E K + Sbjct: 130 R--VASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVA 187 Query: 174 KLDLVVAGTEAA-VLMVESEAQ--LLSEDQMLGAVVFGHEQQQVVIQNINEL 222 + DL V T+ ++ V+ A+ ++ D+ + G Q + EL Sbjct: 188 RADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQ---DVMREL 236 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 22/243 (9%) Query: 318 GREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFL 377 GR+ R + V+ GV P GSA G T+ L T TL D + + G++ Sbjct: 11 GRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTL----DDKPAPHMRGKKEGWLT 66 Query: 378 FHYNFPPYSVGET--GMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESN 435 Y+ P S + R RL R + + M T+ V ++ ++ Sbjct: 67 AEYSMLPRSTTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVAD 126 Query: 436 GSSSMASVCGASLALMD-------AGV----PIKAAVAGIAMGLVKEGDNYVVLSDILGD 484 G + +ASV AL D +G PI V I++GL+ + + D+ + Sbjct: 127 GGTRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDE----LRVDLDYE 182 Query: 485 EDHLGDMDFKVAGSR-DGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 ED + D V + + +Q ++ IT + L+ + ++ + + Sbjct: 183 EDKVARADLNVIATDTGLLVEVQGGAELGPITVDEYTRLLSCGVASVQDVMRELTPQLAV 242 Query: 544 PRG 546 +G Sbjct: 243 IQG 245 >UniRef50_Q1IY12 RNA binding S1 n=9 Tax=Deinococci RepID=Q1IY12_DEIGD Length = 587 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 97/256 (37%), Gaps = 18/256 (7%) Query: 469 VKEGDNYVVLSDILGDEDHLG--DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 V E +++ + G L +D + D + +K+ + ++ +V ++ Sbjct: 168 VLEKVRGGLVAQVEGIRAFLPASQVDTRRVNDLDPYVGKPLMVKLIELNRKRNRVIISHR 227 Query: 527 KGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRA-----LTE 581 EQ I + ++ G G V R+ Sbjct: 228 AILEAQKAKAREQTIGKLVPGAQFEGEVVEITDFGV--FVNLGGIDGLVHRSELTYGRFN 285 Query: 582 ETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTRIVD 634 +++ D V++ D + + E + +G+ GKVT + + Sbjct: 286 HPRDVVKVGDKVQVQVIDVDEGRERINLSMKSLTQDPWEGAVEKYHIGQRVRGKVTNLTN 345 Query: 635 FGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEA 692 FGAFV + G EGLVH+S+++ KRV + L+ G EV +L +D ++ RI L I++ Sbjct: 346 FGAFVELEPGLEGLVHVSEMSWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISLGIRQT 405 Query: 693 TEQSQPAAAPEAPAAE 708 T+ A P Sbjct: 406 TDDPWSALPDRYPPGT 421 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 11/196 (5%) Query: 516 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV 575 +++ Q + + +L + + A I F P +++ ++ D+ G Sbjct: 151 WRVLERMQEQDEAFEVEVLEKVRGGLVAQVEGIRAFLPA---SQVDTRRVNDLDPYVGKP 207 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 + IE+ I + + E+ ++ G + G+V I DF Sbjct: 208 LMV------KLIELNRKRNRVIISHRAILEAQKAKAREQTIGKLVPGAQFEGEVVEITDF 261 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 694 G FV +G G +GLVH S++ R D +++G +V V+V++VD + RI LS+K T+ Sbjct: 262 GVFVNLG-GIDGLVHRSELTYGRFNHPRDVVKVGDKVQVQVIDVDEGRERINLSMKSLTQ 320 Query: 695 QSQPAAAPEAPAAEQG 710 A + ++ Sbjct: 321 DPWEGAVEKYHIGQRV 336 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 21/187 (11%) Query: 528 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGGSVIRALTE- 581 R I M+ P E ++ + + G + ++E Sbjct: 306 EGRERINLSMKSLTQDPWEGAVEKYHIGQRVRGKVTNLTNFGAFVELEPGLEGLVHVSEM 365 Query: 582 -------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTG 627 ++ D+ I D ++ + ++ + G G Sbjct: 366 SWTKRVRHPNEVLKEGDEVEAVILRIDPKERRISLGIRQTTDDPWSALPDRYPPGTPVKG 425 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIR 686 K+T + DFG F+ I G EGL+HIS++ +RV D + G E+ +L +D + R Sbjct: 426 KITGMTDFGVFMEIEEGIEGLIHISELDTQRVNNPADLFKKGDEIEAVILNIDPVEQRAS 485 Query: 687 LSIKEAT 693 LS + A Sbjct: 486 LSRRRAL 492 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV--EKVTDYLQMGQEVPVKVLEV 679 G + G V I G V +G EG++ ++QI D+ V E+ + G ++ V+ V Sbjct: 72 GDIVDGTVVFIGQEGIAVDVGAKVEGIIPLNQIGDEPVTLEQAQQMYKPGDQIEAYVVRV 131 Query: 680 D-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 D +I LS K A + ++ Sbjct: 132 DLANNQIVLSKKRADQDKGWRVLERMQEQDEA 163 >UniRef50_Q9LX74 AT3G46210 protein n=8 Tax=Embryophyta RepID=Q9LX74_ARATH Length = 239 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 15/201 (7%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR + +R L +L R HGSA +++G+T+ L E + Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGP------KAGTKKNENAE 58 Query: 375 TFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITES 434 F + P S G+ G V E + + KR + ++ T V+ ++ Sbjct: 59 KACFEVIWKPKS-GQIGKV------EKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHD 111 Query: 435 NGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFK 494 +GS ++ A AL+DAG+P+K I L + G Y+VL +E + + Sbjct: 112 DGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENG--YLVLDPNKLEEKKMTAFAYL 169 Query: 495 VAGSRDGISALQMDIKIEGIT 515 V + + EG Sbjct: 170 VFPNTTLSVLPEGSSVAEGEP 190 Score = 62.3 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 19/163 (11%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQK---KAKPGQDFFPLTVNYQERTYAA 70 + ++ R + S DT V V G K K + V ++ ++ Sbjct: 15 RPLACSRNILHRP-HGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQI 73 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 G++ E E ++ R I + I + VI VV + + P A Sbjct: 74 GKV----------EKEYEMILKRTI-QSI-CVLTVNPNTTTSVIIQVVHDDGSLLPC--A 119 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNPTQDELKE 172 + A AAL +GIP A N VL+P + E K+ Sbjct: 120 INAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKK 162 >UniRef50_B8J034 RNA binding S1 domain protein n=2 Tax=Desulfovibrio RepID=B8J034_DESDA Length = 489 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 29/287 (10%) Query: 446 ASLAL---MDAGVPIKAAVAG-IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG 501 AL DA +P+ +AG G E + + G Sbjct: 104 GVAALEEARDAALPVDGRIAGSCKGGYTVEVLGKTAFCPGSQIGLASAEDAETLTGRTLQ 163 Query: 502 ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAP-------- 553 ++++ + I + L++ + +L L + G IS FAP Sbjct: 164 FLVIRVENRGRNIVVSR-RALLDRERQEQLEALLEKLGVGDTVEGKISRFAPFGAFMELD 222 Query: 554 -----RIHTIKINPDKIK--DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAK 606 IH +++ ++ D G +RA +I D G V+IA + + Sbjct: 223 TAVEGMIHLSELSWSRVGAPDEAVSLGDTVRAKV----LSISKSDKGQVRIALSRKQAEG 278 Query: 607 HAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDY 665 +++T +E G V GKV R+ FGAFV I G EGLVHIS+++ KRV K + Sbjct: 279 ---DPWQDVTQRLENGAVVQGKVVRLAPFGAFVEILPGIEGLVHISELSWTKRVNKPEEI 335 Query: 666 LQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 LQ+G V VK+ E++ RI LS+++A AA + + Sbjct: 336 LQVGDIVAVKIKEINADSRRISLSLRDAEGDPWQDAAQQFAPGSIVQ 382 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 91/271 (33%), Gaps = 21/271 (7%) Query: 453 AGVPIKAAVAGIAM--------GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISA 504 AG + V I V + D G E + Sbjct: 34 AGQKVTGTVIAITGDSVFVDVGIKVDGIMERKDILDADGKETTAPGEPVEAWVIGVSAQE 93 Query: 505 LQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDK 564 +++ + G ++ A + A I G + + F P + + Sbjct: 94 IRLSRSMSGSGVAALEEARDAALPVDGRIAGSCKGGYTVEVLGKTAFCPGSQIGLASAED 153 Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV 624 + + G+ + I +E+ G + + + ++E + ++ VG Sbjct: 154 AETLTGRTLQFL---------VIRVENRGRNIVVSRRALLDRERQEQLEALLEKLGVGDT 204 Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG- 683 GK++R FGAF+ + EG++H+S+++ RV + + +G V KVL + + Sbjct: 205 VEGKISRFAPFGAFMELDTAVEGMIHLSELSWSRVGAPDEAVSLGDTVRAKVLSISKSDK 264 Query: 684 ---RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RI LS K+A + Sbjct: 265 GQVRIALSRKQAEGDPWQDVTQRLENGAVVQ 295 Score = 58.4 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 8/118 (6%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVT 630 + +++ D VKI + + + ++ ++ + G + G V Sbjct: 327 KRVNKPEEILQVGDIVAVKIKEINADSRRISLSLRDAEGDPWQDAAQQFAPGSIVQGIVE 386 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 +G F+ + G GL+ I + + L G V + V +D RI L Sbjct: 387 GRSTYGLFITLAPGITGLLPAGIIKNAKNAGQYSKLDKGDSVTLVVQNLDTAARRISL 444 >UniRef50_B0KVD5 30S ribosomal protein S1 n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD5_9BACT Length = 414 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI 632 G +R IEI+ + + + A ++ ++ +EI++G G VT I Sbjct: 176 GKTLRV------KVIEIDKEKNRFVLSEKDALATYSEESRKKRLSEIKIGSTVEGIVTGI 229 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 + FG FV + G EGLVHIS+IA ++V ++Y ++GQ++ V VL VD + ++ LS+K+ Sbjct: 230 MPFGVFVDLD-GVEGLVHISEIAWEKVSHPSNYFKVGQKIKVMVLGVDEESNKLALSVKK 288 Query: 692 ATEQSQPAAAPEAPAAEQG 710 + P + Sbjct: 289 LIPNPWETVEEKYPVGTKV 307 Score = 94.2 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 103/307 (33%), Gaps = 45/307 (14%) Query: 416 PDMDKFPYTVRVVSEITESN-GSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDN 474 + F + + + + E N G SL L +P+ + + Sbjct: 108 DAEEAFEKGLIIDATVIEYNKGGLLC-----DSLGLR-GFIPLSHL---DRVHFANDVAK 158 Query: 475 YVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 + G E L + ++G + +++D + ++ +R L Sbjct: 159 FAA-----GSEAELKESLKILSGKTLRVKVIEIDKEKNRFVLSEKDALATYSEESRKKRL 213 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEI 589 ++ I I T + D+ G G + ++ Sbjct: 214 SEIK---------IGSTVEGIVTGIMPFGVFVDLDGVEGLVHISEIAWEKVSHPSNYFKV 264 Query: 590 EDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG 642 V + D E K A+ E + + VG TG V++IV FGAFV + Sbjct: 265 GQKIKVMVLGVDEESNKLALSVKKLIPNPWETVEEKYPVGTKVTGVVSKIVPFGAFVTLE 324 Query: 643 GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAA 701 G +GL+HIS+ L+ G+ V V++VD ++ LS +E ++ Sbjct: 325 KGLDGLIHISE--------AEAPLKEGETVSAVVIQVDGENQKLALSTREHNFDNEKDKV 376 Query: 702 PEAPAAE 708 E + Sbjct: 377 KEKSKDK 383 Score = 48.8 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 34/205 (16%) Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 M+Q + I ++ + G + + +++ I++ + T Sbjct: 24 QMKQFRLGDMVEGVVVNVSHEEILVDIGAKSE--GIITRLELSEADKSYKNIQVGEKITA 81 Query: 596 KIAATDGE--------KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEG 647 K+ T+ K ++ ++ E G + V G G G Sbjct: 82 KVVQTENAQGYVVLSLKKAEKDKKWQDAEEAFEKGLIIDATVIEYNKGGLLCD-SLGLRG 140 Query: 648 LVHISQIADKRVEKVTDYLQ----------------MGQEVPVKVLEVD-RQGRIRLSIK 690 + +S + RV D + G+ + VKV+E+D + R LS K Sbjct: 141 FIPLSHLD--RVHFANDVAKFAAGSEAELKESLKILSGKTLRVKVIEIDKEKNRFVLSEK 198 Query: 691 EAT----EQSQPAAAPEAPAAEQGE 711 +A E+S+ E E Sbjct: 199 DALATYSEESRKKRLSEIKIGSTVE 223 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 594 TVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 653 + + + + +G + G V + V IG EG++ + Sbjct: 3 KARKIQKKESAMSKYLTDKDLQMKQFRLGDMVEGVVVNVSHEEILVDIGAKSEGIITRLE 62 Query: 654 IADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIKEATEQ-SQPAAAPEAPAA 707 +++ +K +Q+G+++ KV++ + QG + LS+K+A + A Sbjct: 63 LSEA--DKSYKNIQVGEKITAKVVQTENAQGYVVLSLKKAEKDKKWQDAEEAFEKG 116 >UniRef50_C6BYI5 RNA binding S1 domain protein n=4 Tax=Desulfovibrionales RepID=C6BYI5_DESAD Length = 503 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 99/262 (37%), Gaps = 21/262 (8%) Query: 458 KAAVAGIAMGLVKEGDNYVVLSDILGD----EDHLGDMDFKVAGSRDGISALQMDIKIEG 513 K +V V + L+D G+ + ++ + + + + M Sbjct: 44 KDSVFVDTGSKVDGVVDRDELTDEEGELTVKDGDTVELYVISMNNNEIVLSKAMSGAGG- 102 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 +++ A + + F P +I+ ++D G Sbjct: 103 --LNMLREAYENKVPVEGKVAETCKGGFRVKMMHRKVFCPV---SQIDTSFVEDAEAFVG 157 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 S I+ E++G + + + + E +++ V GKVT+++ Sbjct: 158 ST------HNFQVIKFEENGRNIVVSRRVLLEQEQEKAREAFMQDVQPDAVMEGKVTKLM 211 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-----RIRLS 688 FGAFV + G EG+VHIS+++ R K D +Q G EV V++L ++ + +I LS Sbjct: 212 PFGAFVELTPGVEGMVHISELSWSRSAKPEDVVQPGDEVSVRILSMEPRKDGKGLKIGLS 271 Query: 689 IKEATEQSQPAAAPEAPAAEQG 710 +K+ + A ++ Sbjct: 272 LKQLQADPWDEIGDKFKAGDKV 293 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 104/274 (37%), Gaps = 23/274 (8%) Query: 455 VPIKAAVA-GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 VP++ VA G + + V + + + GS ++ + Sbjct: 114 VPVEGKVAETCKGGFRVKMMHRKVFCPVSQIDTSFVEDAEAFVGSTHNFQVIKFEENGRN 173 Query: 514 IT---KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 I + +++ +A+ A M+ + + + + Sbjct: 174 IVVSRRVLLEQEQEKAREA------FMQDVQPDAVMEGKVTKLMPFGAFVELTPGVEGMV 227 Query: 571 KGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK-----------AKHAIRRIEEITAEI 619 + + + + ++ D+ +V+I + + K + +EI + Sbjct: 228 HISELSWSRSAKPEDVVQPGDEVSVRILSMEPRKDGKGLKIGLSLKQLQADPWDEIGDKF 287 Query: 620 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLE 678 + G TG V R DFGAFV I G EGLVH+S+++ KRV K D + GQEV V V + Sbjct: 288 KAGDKVTGTVVRCADFGAFVEIAPGIEGLVHVSEMSYTKRVHKPEDEVSPGQEVAVMVKD 347 Query: 679 VDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +D + RI LS+K+A ++ E Sbjct: 348 IDPVKRRIGLSMKDAAGDPWMDMEDTFKVGQEVE 381 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Query: 582 ETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTRIVD 634 + + + V + D K + A ++ +VG+ G V + Sbjct: 330 KPEDEVSPGQEVAVMVKDIDPVKRRIGLSMKDAAGDPWMDMEDTFKVGQEVEGTVENRAE 389 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 FG F+ + G GL+ +S+I + + L+ G +V + + E++ ++ L+ EA Sbjct: 390 FGIFINLAPGITGLLPMSRITRSGKQAELEALKPGDKVKISIEEINTTDRKVTLTAGEAQ 449 Query: 694 EQSQPAAAPEA 704 + E Sbjct: 450 KADGDNDWKEY 460 Score = 42.6 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 ++VG G V I FV G +G+V ++ D E+ ++ G V + V+ Sbjct: 28 NLQVGDQIKGTVISITKDSVFVDTGSKVDGVVDRDELTD---EEGELTVKDGDTVELYVI 84 Query: 678 EVDRQGRIRLS 688 ++ I LS Sbjct: 85 SMN-NNEIVLS 94 >UniRef50_Q0PQN6 30S ribosomal subunit protein S1 (Fragment) n=2 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN6_9GAMM Length = 283 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 I+++ + + + E++ ++ G+ G V + D+GAFV +G G Sbjct: 79 KVIKLDRRRNNVVVSRRAVVEQEYSAEREKLLENLQEGQELKGVVKNLTDYGAFVDLG-G 137 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 +GL+HI+ +A KRV+ +D +Q+G E+ VKVL+ D + R+ L +K+ + A A Sbjct: 138 IDGLLHITDMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARR 197 Query: 704 APAAEQ 709 P + + Sbjct: 198 YPESTR 203 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYT 626 + + ++I D+ TVK+ D E+ + ++ + Sbjct: 146 DMAWKRVKHPSDVVQIGDEITVKVLKFDRERNRVSLGLKQMGDDPWVALARRYPESTRLF 205 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT 663 GKVT I D+G FV I G EGLVH+S++ + E + Sbjct: 206 GKVTNIADYGCFVEIEEGVEGLVHVSEMDLDQQEHPS 242 >UniRef50_UPI00005A29C6 PREDICTED: similar to Exosome complex exonuclease RRP41 (Ribosomal RNA processing protein 41) (Exosome component 4) (p12A) isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A29C6 Length = 226 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 11/193 (5%) Query: 360 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 419 + Y+ +S GE R+ G ++ A + Sbjct: 37 PQIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAI-LTQ 95 Query: 420 KFPYT-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478 P + + + ++ +++G + A V A+LA++DAG+P++ V + G V + L Sbjct: 96 LHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV----DNTAL 151 Query: 479 SDILGDEDHLGDMDFKVA--GSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 +D+ E+ G +A + I+ L+MD ++ + ++ L A A + V Sbjct: 152 ADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHE---DHLEQVLEAAARAARDVHTV 208 Query: 537 MEQAINAPRGDIS 549 +++ + + S Sbjct: 209 LDRVVRQHVREAS 221 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 21/177 (11%), Positives = 61/177 (34%), Gaps = 8/177 (4%) Query: 57 FPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVI 114 P + +A +R + + + +++ + Sbjct: 47 LPDRALVNCQYSSAT-FSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIY 105 Query: 115 ATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKES- 173 V+ + + A+ A+ +GIP + A G++++ + + + E Sbjct: 106 VQVLQADGGT--YAACVNAATLAVLDAGIPMRDFVCACSAGFVDNTALADLSHVEEAAGG 163 Query: 174 -KLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKP 229 +L L + + ++E +A+ L ED + + + V ++ +V++ + Sbjct: 164 PQLALALLPASGQIALLEMDAR-LHEDHLEQVLEAAARAARDVHTVLDRVVRQHVRE 219 >UniRef50_A4SGB6 SSU ribosomal protein S1P n=12 Tax=Chlorobiaceae RepID=A4SGB6_PROVI Length = 602 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG--ISALQMDIKIEGITKEIMQV 521 I G + + + G E L V RD + MD ++ I Sbjct: 143 IISGKIINRVKGGMTVSLSGVEAFLPGSQIDVKPVRDFDALVGQTMDFRVVKI-----NP 197 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-------- 573 + IL A D + + N + GG Sbjct: 198 VTQNIVVSHKVILEEEYAARREEMLDSIKVGMVLEGTVKNITDFGIFVDLGGLDGLVHIT 257 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYT 626 + ++++ V + D + ++ E I + VG Sbjct: 258 DITWGRINHPSEVVDLDQPIKVVVVGFDENTKRVSLGMKQLEAHPWENIELKYPVGSKAQ 317 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-R 684 G+V I D+GAFV I G EGLVHIS+++ + ++ ++ +GQEV +L +D+ + Sbjct: 318 GRVVSITDYGAFVEIEKGIEGLVHISEMSWTQHIKHPGQFVTLGQEVECVILNIDKDHTK 377 Query: 685 IRLSIKEATEQSQPAAAPEAPAAEQ 709 + LS+K E A + + + Sbjct: 378 LSLSMKRVNEDPWIALSEKYVENTR 402 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 9/214 (4%) Query: 499 RDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 558 D + L + K + + I + + + ++ + +S + Sbjct: 112 EDKMGQLILSKKKADVLR-IWDKIYDSIENDTIISGKIINRVKGGMTVSLSGVEAFLPGS 170 Query: 559 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE 618 +I+ ++D G + ++I + + + R EE+ Sbjct: 171 QIDVKPVRDFDALVGQTMDFRV------VKINPVTQNIVVSHKVILEEEYAARREEMLDS 224 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 I+VG V G V I DFG FV +G G +GLVHI+ I R+ ++ + + Q + V V+ Sbjct: 225 IKVGMVLEGTVKNITDFGIFVDLG-GLDGLVHITDITWGRINHPSEVVDLDQPIKVVVVG 283 Query: 679 VDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 D R+ L +K+ + P + + Sbjct: 284 FDENTKRVSLGMKQLEAHPWENIELKYPVGSKAQ 317 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 22/202 (10%) Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGGSVIRALTE---- 581 + M+Q P +I P + I D KG + ++E Sbjct: 289 KRVSLGMKQLEAHPWENIELKYPVGSKAQGRVVSITDYGAFVEIEKGIEGLVHISEMSWT 348 Query: 582 ----ETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVT 630 G + + + I D + K ++ ++ + + G V+ Sbjct: 349 QHIKHPGQFVTLGQEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYVENTRHKGTVS 408 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 I DFG FV + G +GLVHIS ++ K++ ++ ++ QE+ VKVL+ D RI L Sbjct: 409 NITDFGVFVELEPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIALG 468 Query: 689 IKEATEQSQPAAAPEAPAAEQG 710 K+ + + Sbjct: 469 HKQMNPDPWGGFEQQYAVGAES 490 Score = 64.6 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 95/280 (33%), Gaps = 31/280 (11%) Query: 455 VPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 514 + +K V A G V +Y +I E + + S G Sbjct: 306 IELKYPVGSKAQGRVVSITDYGAFVEI---EKGIEGLVHISEMSWTQHIKHPGQFVTLG- 361 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI----- 569 + ++ + + M++ P +SE K I D Sbjct: 362 --QEVECVILNIDKDHTKLSLSMKRVNEDPWIALSEKYVENTRHKGTVSNITDFGVFVEL 419 Query: 570 GKGGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEE 614 G + +++ ++ + VK+ D + A+ Sbjct: 420 EPGVDGLVHISDLSWTKKIRHPSELVKKNQELEVKVLKFDVHARRIALGHKQMNPDPWGG 479 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + VG + ++++I++ G V + G +G V + + V+ + ++G +P+ Sbjct: 480 FEQQYAVGAESSAEISQIIEKGVIVILPGDVDGFVPATHLLQGGVKDIHSSFKIGDALPL 539 Query: 675 KVLEVDRQ-GRIRLS----IKEATEQSQPAAAPEAPAAEQ 709 +V+E D++ RI LS K+ +++ + P ++ Sbjct: 540 RVIEFDKENKRIILSALEYFKDKSKEEIESYLQAHPNEKK 579 >UniRef50_D1N749 Ribosomal protein S1 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N749_9BACT Length = 607 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 22/252 (8%) Query: 477 VLSDILGDEDHLGDMDFKVAG--SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHIL 534 ++ D+ G L V + D + D+KI I + + +++ R + Sbjct: 161 IMVDVEGFPAFLPGSQLDVGPVHNMDDYIGKEFDVKIIKINLDRRNIVVSR----RELLE 216 Query: 535 GVMEQAINAPRGDISEFAPRIHTIKI--NPDKIKDVIGKGG-----SVIRALTEETGTTI 587 ++ + G++ R +K + D+ G G + + Sbjct: 217 ETLKDQRSKLLGEMKVDELRKGVVKNITDFGAFIDLGGVDGLLHITDISWGRISHPSEVL 276 Query: 588 EIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 ++ ++ V I D EK + + +++ ++ G GKV I+ +GAFV Sbjct: 277 KVGEEIEVVIIGIDKEKERVSLGLKQKTRNPWDDVVSKYPKGSKINGKVVNIMPYGAFVE 336 Query: 641 IGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQP 698 I G EGL+H+S+++ KRV K +D L +G+EV VL++DR +I L +++ Sbjct: 337 IETGVEGLIHVSEMSWTKRVSKASDVLSIGEEVEAVVLDIDRDSRKISLGLRQKERNPWE 396 Query: 699 AAAPEAPAAEQG 710 A + P + Sbjct: 397 VLAEKYPVGRRI 408 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA 637 ++ EE + D + KI+ +K + E + + VGR TGKV + +GA Sbjct: 364 SIGEEVEAVVLDIDRDSRKISLGLRQKER---NPWEVLAEKYPVGRRITGKVRNMTSYGA 420 Query: 638 FVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQ 695 FV I +G++H+S ++ R + + L+ GQEV +L+++ + RI L +K+A Sbjct: 421 FVEIENDIDGMIHVSDMSWTRKINNPNEVLKPGQEVEAIILDINPEQQRISLGLKQAETD 480 Query: 696 SQPAAAPEAPAAEQG 710 + Sbjct: 481 PWANINDLYKVGDVV 495 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 8/124 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 ++ + I + E+ + ++ I +VG V GKVT+I Sbjct: 443 INNPNEVLKPGQEVEAIILDINPEQQRISLGLKQAETDPWANINDLYKVGDVVKGKVTKI 502 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 FGAFV + +GL+HISQ++ RVEKV D L +G EV +V++VD + RI LSIK Sbjct: 503 AAFGAFVELTNKIDGLIHISQLSRDRVEKVKDVLNVGDEVEARVIKVDTDERRIGLSIKA 562 Query: 692 ATEQ 695 E Sbjct: 563 VGEN 566 Score = 56.9 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 8/185 (4%) Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEE 582 + + L + A R ++ + ++ Sbjct: 45 IPSSMDELLQSSESTNAFTKGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKFDEAN 104 Query: 583 TGTTIEI---EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 G I++ E + + EKA ++I+ IT E G V G + V G V Sbjct: 105 IGDKIDVYLEEIENRNNMPEISLEKA-YSIKAWNRITTEYGEGHVVKGFMRHRVKGGIMV 163 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQP 698 + G + SQ+ V + DY +G+E VK+++++ R I +S +E E++ Sbjct: 164 DVE-GFPAFLPGSQLDVGPVHNMDDY--IGKEFDVKIIKINLDRRNIVVSRRELLEETLK 220 Query: 699 AAAPE 703 + Sbjct: 221 DQRSK 225 Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%) Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 ++ + + + E T G++ GK+ GA V IG EG V S+ Sbjct: 43 SNIPSSMDELLQSSESTNAFTKGKIVEGKIVAKRPDGALVDIGYKAEGFVPASEFLKF-- 100 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQG---RIRLSIKEATEQSQPAAAPEAPAAEQG 710 D +G ++ V + E++ + I L K + ++ E Sbjct: 101 ----DEANIGDKIDVYLEEIENRNNMPEISLE-KAYSIKAWNRITTEYGEGHVV 149 >UniRef50_B8G2Q3 Hydroxymethylbutenyl pyrophosphate reductase n=2 Tax=Desulfitobacterium hafniense RepID=B8G2Q3_DESHD Length = 661 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 8/155 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + +I P ++D+ G +R IE + + + + + E Sbjct: 410 VPASQIQPGYVEDLNQFKGQTLRLRV------IEFDPAKRRVVLSQKEILQEEQAAKKEH 463 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + A ++ G V +G V R+ FGAFV IG G +GL+H+S IA R++ ++Y+ +G EV V Sbjct: 464 LLATLQEGDVVSGVVKRLAQFGAFVDIG-GVDGLLHVSDIAYTRIKHPSEYVNVGDEVEV 522 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 ++L+VD++ G+I L +K+ +A + Sbjct: 523 QILKVDKEQGKISLGLKQLKPSPWESAPEKYALGS 557 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 + + + D+ V+I D E+ K ++ E + +G + TGKV RI Sbjct: 507 IKHPSEYVNVGDEVEVQILKVDKEQGKISLGLKQLKPSPWESAPEKYALGSLVTGKVVRI 566 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIK 690 FGAFV + G + L+HISQ+++KRV KV D +++G V KV+E + RI LSI+ Sbjct: 567 APFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQAKVIECKPEEKRISLSIR 625 Score = 59.6 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 79/221 (35%), Gaps = 20/221 (9%) Query: 498 SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHT 557 + L E + ++ + H + ME + Sbjct: 246 TGVVTVGLTAGASTPDWIIEEVYRKMSTMENKETHEMMNMEDWAEGMQNLHRGALVTGTV 305 Query: 558 IKINPDKIKDVIGKGGSVIRALTE-------ETGTTIEIEDDGTVKIAATDGE------K 604 +KIN D++ +G + AL E +T + I D + + + E Sbjct: 306 VKINHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAIGDQISAVVLRVENEEGNPVLS 365 Query: 605 AKHAIRR--IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 + A ++++ E GKV +V G V + G G V SQI VE + Sbjct: 366 KRRADEMAAVDKLKELAESKEEIQGKVADVVKGGLIVDV--GMRGFVPASQIQPGYVEDL 423 Query: 663 TDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAP 702 + GQ + ++V+E D + R+ LS KE ++ Q A Sbjct: 424 NQF--KGQTLRLRVIEFDPAKRRVVLSQKEILQEEQAAKKE 462 Score = 49.2 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 1/102 (0%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 + E + G + TG V +I FV +G EG++ + ++ + +D + + Sbjct: 285 MEDWAEGMQNLHRGALVTGTVVKINHDEVFVDLGWKSEGVIALKELTVASDLQTSDIVAI 344 Query: 669 GQEVPVKVLEV-DRQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 G ++ VL V + +G LS + A E + E +++ Sbjct: 345 GDQISAVVLRVENEEGNPVLSKRRADEMAAVDKLKELAESKE 386 >UniRef50_O06000 30S ribosomal protein S1 homolog n=76 Tax=Bacillaceae RepID=RS1H_BACC1 Length = 382 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 8/158 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 I + ++D G + +E++ + I + + +E Sbjct: 128 IPASLVEVHYVEDFTDYKGKTLAV------KIVELDREKNRVILSHKAVVELELDSKKKE 181 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + ++ G V G V R+ DFGAFV +G G +GLVHISQI+ +RVE+ ++ L+ GQ+V V Sbjct: 182 AISSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISHERVEQPSEVLEQGQKVKV 240 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KVL VD RI LSIK A A E A + E Sbjct: 241 KVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIRE 278 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 18/206 (8%) Query: 508 DIKIEGITKEIMQVALNQAKGARLH--ILGVMEQAINAPRGDISEFAPRIHTIKINPDKI 565 D K + + +I+++ + + H ++ + + + + Sbjct: 143 DYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDF 202 Query: 566 KDVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR------- 610 + GG + E+ +E VK+ + D + + ++ Sbjct: 203 GAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPG 262 Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQ 670 E I E++ G + G V R+V FGAFV I G EGLVH+SQIA++ V+ + L+MGQ Sbjct: 263 PWENIAGEVKAGDIREGIVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQ 322 Query: 671 EVPVKVLEVD-RQGRIRLSIKEATEQ 695 EV VKVLEV + RI LSIKEA E+ Sbjct: 323 EVKVKVLEVHVAEKRISLSIKEAFEE 348 Score = 61.9 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E++VG V TG VT++ + V +G +G++ IS++A+ +EK +D +++ Q + +K+ Sbjct: 13 KELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQILELKI 72 Query: 677 LEVDRQGRIRLSIKEAT-EQSQPAAAPEAPAA 707 +++ + + LS + E++ + + Sbjct: 73 IKL-EENDLVLSKRAVDAEKAWIELQEKFTSG 103 Score = 59.6 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 22/197 (11%) Query: 533 ILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL-------TEETGT 585 ++ M + + + K+ ++ +G + + E+ Sbjct: 1 MVEKMNEEVMDSKELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60 Query: 586 TIEIEDDGTVKIAATDG------EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 +E++ +KI + ++A A + E+ + G V+ V IV+ G V Sbjct: 61 VVELDQILELKIIKLEENDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVV 120 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 + G G + S + VE TDY G+ + VK++E+D + R+ LS K E Sbjct: 121 DL--GVRGFIPASLVEVHYVEDFTDY--KGKTLAVKIVELDREKNRVILSHKAVVELELD 176 Query: 699 AAAPEA----PAAEQGE 711 + EA + E Sbjct: 177 SKKKEAISSLKEGDVVE 193 >UniRef50_C1FAB9 Ribosomal protein S1 n=2 Tax=Bacteria RepID=C1FAB9_ACIC5 Length = 637 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 92/271 (33%), Gaps = 25/271 (9%) Query: 458 KAAVAGIAMGLVKEGDNYVV----LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 K V GI G VK G + E G + ++++ K Sbjct: 189 KTPVTGIVAGRVKGGLTVDIGIKAFLPGSQLEIRPVRNLDAYIGQPIEVRVIKLNKKRGN 248 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAI----NAPRGDISEFAPRIHTIKINPDKIKDVI 569 + ++ + R L +E+ + I Sbjct: 249 VVVSRKEILEEEQTAKRSETLEHLEEGSILTGTVKNLTDYGAFVDMGGIDGLLHITDMSW 308 Query: 570 GKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVG 622 G+ + + D+ VK+ D +K + ++ + T VG Sbjct: 309 GR--------LTHPRDLVNVGDEIQVKVLKFDRDKQRVSLGFKQLTPDPWLDATERYPVG 360 Query: 623 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR 681 G+V + D+G+FV + G EGLVH+S++ KR++ + L+ G EV VL V+ Sbjct: 361 ARVRGRVLSVTDYGSFVELEQGIEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNP 420 Query: 682 -QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RI L +K+ + + P E Sbjct: 421 TDRRISLGMKQLQDNPWETLGDKYPTGATVE 451 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 9/155 (5%) Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITA 617 I+ ++ + ++ D+ + + + + ++ E + Sbjct: 383 IEGLVHVSEMTWSKRMKHPSKMLKPGDEVETVVLSVNPTDRRISLGMKQLQDNPWETLGD 442 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKV 676 + G G+V + DFGAF+ I G +GLVH+S ++ KRV+ ++ L+ G++V V Sbjct: 443 KYPTGATVEGRVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGEKVRAVV 502 Query: 677 LEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQG 710 L V+ + R+ L IK+ + + Sbjct: 503 LGVEPENRRLSLGIKQLQPDVWETFFEQHRTGDVV 537 Score = 92.3 bits (228), Expect = 6e-17, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 10/137 (7%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 + ++ + + + E + ++ E + G V GKV Sbjct: 483 KRVKHPSEVLKKGEKVRAVVLGVEPENRRLSLGIKQLQPDVWETFFEQHRTGDVVHGKVL 542 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSI 689 R FGAF+ I G EGL H+S+ D+ V L+ GQE K+++++ + ++ LS+ Sbjct: 543 RTAQFGAFIEIAEGVEGLCHVSEATDQHGAPVN--LEQGQEYDFKIIKMNPDEKKVGLSL 600 Query: 690 KEATEQSQPAAAPEAPA 706 + E++ A A Sbjct: 601 RAVGEEASRADVEAYKA 617 >UniRef50_A5N6D1 30S ribosomal protein S1 n=2 Tax=Clostridium kluyveri RepID=A5N6D1_CLOK5 Length = 314 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 93/215 (43%), Gaps = 12/215 (5%) Query: 498 SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHT 557 + + + + +E + ++ + I +++ + A + F P H Sbjct: 6 QTNSVDGIINETDMESV-WSKLENEFKNEDIFEVVIKELVKGGLIADLHGLRAFIPASHI 64 Query: 558 IKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITA 617 D +K+ IGK V I+++ + + + +++ + Sbjct: 65 SVKYTDDLKEFIGKTLKV---------KLIQLDKSKNKIVLSGKEVEKLELEEMSKKLWS 115 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 I G G+V+RI +FG FV +G G EGLVHIS+++ K+++ ++ + +G ++ V VL Sbjct: 116 TISKGDKIEGRVSRITNFGVFVDLG-GVEGLVHISELSWKKIKDPSEVVSVGDKLKVYVL 174 Query: 678 EVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +++ + RI LSIK + + + + Sbjct: 175 NLNQDRNRISLSIKRTLNSPWENIGKKYKSNDIVD 209 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 105/251 (41%), Gaps = 17/251 (6%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRD--GISALQMDIKIEGITKEIMQVALN 524 ++KE +++D+ G + V + D + +K+ + K ++ L+ Sbjct: 38 VVIKELVKGGLIADLHGLRAFIPASHISVKYTDDLKEFIGKTLKVKLIQLDKSKNKIVLS 97 Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRAL 579 + +L + + ++ + D+ G G + Sbjct: 98 GKEVEKLELEEMSKKLWSTISKGDKIEGRVSRITNFGV--FVDLGGVEGLVHISELSWKK 155 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 ++ + + D V + + ++ + ++ E I + + + G V+++ Sbjct: 156 IKDPSEVVSVGDKLKVYVLNLNQDRNRISLSIKRTLNSPWENIGKKYKSNDIVDGIVSKV 215 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 ++ GAF+ I G EGLVHIS+I+ + + + L++G +V VK+L +D + RI LSIKE Sbjct: 216 INIGAFIEIEPGIEGLVHISEISQEHITTPEEVLRVGDKVKVKILNIDEKASRISLSIKE 275 Query: 692 ATEQSQPAAAP 702 A ++ P Sbjct: 276 AQDKFSPNFKE 286 >UniRef50_A0D7C7 Chromosome undetermined scaffold_4, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D7C7_PARTE Length = 227 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 14/228 (6%) Query: 314 PRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERT 373 R DGR +R ++ + + GS L+ +G T+ + G Q + Sbjct: 4 KRQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQ-GPRAKTQ---------S 53 Query: 374 DTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 + L Y+ P+S E+ + K ++ + + + + + Sbjct: 54 ELLLIEYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQ 113 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 ++GSS A +LAL+DAGV +K + + +GL + N +V + G++ Sbjct: 114 NDGSSKSAVFNAITLALLDAGVSMKDFLVSVTVGL--DQGNLIVDLTQEESKTAQGELTI 171 Query: 494 KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 + I ++ K + ++ M A I M++ I Sbjct: 172 SYQSRKQKIDFYEL--KTLKLQQQEMDQLSKLAVSKADEIYQWMKEEI 217 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 68/198 (34%), Gaps = 14/198 (7%) Query: 28 TAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEG 87 + + T V V G + + L + Y ++ +R + + Sbjct: 28 DGSCLYKQGLTEVICLVQGPRAKTQSE---LLLIEYSVSPFS-----NIESKRSSKFDKD 79 Query: 88 ETLIARLIDRPIRPL--FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPF 145 ++ A + L E +E+ + V+ + + + AL +G+ Sbjct: 80 YSMFAENLKESFENLIILDENGKSEISISVCVIQNDGSSKSAV--FNAITLALLDAGVSM 137 Query: 146 NGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMVESEAQLLSEDQMLG 203 + + VG +++ TQ+E K ++ +L ++ + + E + L + +M Sbjct: 138 KDFLVSVTVGLDQGNLIVDLTQEESKTAQGELTISYQSRKQKIDFYELKTLKLQQQEMDQ 197 Query: 204 AVVFGHEQQQVVIQNINE 221 + + Q + E Sbjct: 198 LSKLAVSKADEIYQWMKE 215 >UniRef50_A2ID48 RpsA n=1 Tax=Pasteuria ramosa RepID=A2ID48_9BACL Length = 392 Score = 138 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + + ++D VI T EI+ D I + + A + E Sbjct: 126 VPASLVECHYVEDFSDYKDRVI------TMKIAEIDQDSNKLILSCRAVHEEAAQHQREA 179 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 IE+G V G V R+ DFGAFV +G +GLVHISQI+ +RV +D L +G EV Sbjct: 180 TFNNIEIGSVVDGIVRRLTDFGAFVDVGA-VDGLVHISQISWQRVNHPSDVLNIGDEVKC 238 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 KVL+ DR+ GRI LSI++ + + Sbjct: 239 KVLKFDRESGRISLSIRDTQPGPWSGVEDQLVENDIV 275 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYT 626 + + I D+ K+ D E + ++ + ++ + Sbjct: 217 QISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQPGPWSGVEDQLVENDIVK 276 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRI 685 G V R+V FGAFV I G EGL+HIS+I+ + + ++ L+ GQE+ VK+L VD R+ Sbjct: 277 GVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEILVKILNVDSNARRV 336 Query: 686 RLSIKEATEQSQPAAA 701 L++ + + + + Sbjct: 337 SLTMCDVEQNTSQKSE 352 Score = 62.3 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 677 E+G + TG VT+I A + I E ++ IS+++ R+ +V D L++ E+ ++VL Sbjct: 10 PFEIGSLVTGSVTKIDKNQALIKIAEDIEAILPISELSCLRINEVGDMLKLDDELELEVL 69 Query: 678 EVD-RQGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 +D + + LS + +++ P + E E Sbjct: 70 RLDEEENKFILSKRAVDAKKAWPFLQHKYENNENIE 105 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 13/132 (9%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAK--------HAIRRIEEITAEIEVGRVYTGKVTR 631 E G ++++D+ +++ D E+ K A + + + E KV+ Sbjct: 51 INEVGDMLKLDDELELEVLRLDEEENKFILSKRAVDAKKAWPFLQHKYENNENIEAKVSD 110 Query: 632 IVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIK 690 +V G + + G G V S + VE +DY + + +K+ E+D+ ++ LS + Sbjct: 111 VVKGGLVIDL--GVRGFVPASLVECHYVEDFSDY--KDRVITMKIAEIDQDSNKLILSCR 166 Query: 691 EATEQSQPAAAP 702 E++ Sbjct: 167 AVHEEAAQHQRE 178 >UniRef50_C7RHT6 Hydroxymethylbutenyl pyrophosphate reductase n=8 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7RHT6_ANAPD Length = 686 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYT 626 + + E + + D+ VKI + EK + + + E + EVG V T Sbjct: 496 DIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVT 555 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRI 685 GKV ++DFGAFV + G EGLVH+S+I+ + VEK +D L +G E+ VK++ +D + ++ Sbjct: 556 GKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEVKIISIDTDEEKV 615 Query: 686 RLSIKEATEQSQPAAA 701 LSIK E + Sbjct: 616 GLSIKALKEAPERPER 631 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 9/241 (3%) Query: 473 DNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIK--IEGITKEIMQVALNQAKGAR 530 D + L ++ +E F V D D + + T+ + + + + + Sbjct: 320 DGIIKLDEMTEEEAKDPKNSFNVGDEIDVFVIKLDDGEGNVSLSTRRVEGMKVWKDLAEK 379 Query: 531 LHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE 590 ++ ++ + +I K + + EE I Sbjct: 380 AENDELVHGVVSGFNKGGLTVNVEGINGFVPASQIATYFVKNFK--KFVGEEWDLKIISI 437 Query: 591 DDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVH 650 D+ ++ + E + ++ + E+E G+V TGKV R+ DFGAFV + G +GL+H Sbjct: 438 DERKNRLVLSRKEVVE---DELDGLWEELEEGQVVTGKVARLTDFGAFVEV-NGLDGLLH 493 Query: 651 ISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 +S IA RVE +D L +G E+ VK+L+++ + RI L K+ E+ A + + Sbjct: 494 VSDIAWSRVEHPSDVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDV 553 Query: 710 G 710 Sbjct: 554 V 554 Score = 68.8 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 75/202 (37%), Gaps = 7/202 (3%) Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 + + + A + A + ++ I A + S + + + Sbjct: 183 VIENTICKATENRQEAAKSLAKEVDCMIVAGGFNSSNTNKLYQVANLYCKNVFRIETVKD 242 Query: 574 SVIRALTEETGTTI-----EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 ++ L++ I ++ +++ D + + +E+ +I + G Sbjct: 243 LPLQKLSKFKKVGIIAGASTPDEIIEEVVSSMDEFTKEEFMNSLEDSLKKIYPKEIVKGT 302 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRL 687 V + D FV I +G++ + ++ ++ + + +G E+ V V+++D +G + L Sbjct: 303 VIDVKDDEVFVDIQFRADGIIKLDEMTEEEAKDPKNSFNVGDEIDVFVIKLDDGEGNVSL 362 Query: 688 SIKEATE-QSQPAAAPEAPAAE 708 S + + A +A E Sbjct: 363 STRRVEGMKVWKDLAEKAENDE 384 >UniRef50_A9B766 RNA binding S1 domain protein n=6 Tax=Chloroflexi (class) RepID=A9B766_HERA2 Length = 397 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 7/246 (2%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI--TKEIMQVALN 524 G++ D + +++ + + V L + + + + + Q L Sbjct: 54 GVIPNQDLRRLPPELVSGIKNGDTLQVYVMEPESKEGELVLSLNMVQVERDWQEAQTMLE 113 Query: 525 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETG 584 + ++G + + G + F P + N G+ ++ + + + Sbjct: 114 NGQIIEAGVVGYNKGGLLVQVGRVRGFVPASQVV--NLHSRTGTEGQQSAMTKMVGQNIP 171 Query: 585 -TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 IE++ D + + + + E + +E G V TG+V ++ FGAF+ +G Sbjct: 172 LKVIEVDRDRNRLVLSERAAMQRWRQSQKERLLETLEPGAVVTGRVNQLTPFGAFIDLG- 230 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAP 702 G +GL HIS+++ +RV + LQ GQEV V VLEVDR RI LS++ Sbjct: 231 GADGLAHISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQPDPWATIDQ 290 Query: 703 EAPAAE 708 + Sbjct: 291 RYDLGQ 296 Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 10/128 (7%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYT 626 + ++ + V + D ++ + + I ++G++ Sbjct: 240 ELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQPDPWATIDQRYDLGQLIV 299 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRI 685 G+VT I FG FV + G EGL+H S++ + + D LQ GQ+V VKV+ +D ++ R+ Sbjct: 300 GEVTNIAPFGVFVRVEEGVEGLIHASELTEN--GQSPDSLQQGQQVQVKVISLDRQRQRL 357 Query: 686 RLSIKEAT 693 LS++ Sbjct: 358 GLSLRRVD 365 >UniRef50_A1HTW2 Hydroxymethylbutenyl pyrophosphate reductase n=4 Tax=Veillonellaceae RepID=A1HTW2_9FIRM Length = 655 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 103/270 (38%), Gaps = 26/270 (9%) Query: 454 GVPIKAAVAGIAM--GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKI 511 GV +K V G+ V G + + + + V D I + + Sbjct: 289 GVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYPVPENASDVVSEGDEIDVYVLAPEG 348 Query: 512 EG-------------ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTI 558 + + E +Q A + + V++ + + F P Sbjct: 349 DDGPVKLSKVKADNIVAWEKLQAAAQANETVTGKVTAVVKGGLAVSLYGVRGFVPA---S 405 Query: 559 KINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAE 618 ++ + D+ G + L IEI+ + + + RR EE+ + Sbjct: 406 QVAVQHVADLTPYVGQTLELL------PIEIDQAKQKIVLSRRKVLEQEQQRRAEELFSR 459 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 + G++ TG V+RI DFG FV +G G +GL+HIS ++ RV+ T+ + +G EV V V + Sbjct: 460 LAEGQIVTGTVSRIADFGVFVDLG-GVDGLIHISDLSWHRVKNPTEVVNIGDEVQVFVQK 518 Query: 679 VDRQ-GRIRLSIKEATEQSQPAAAPEAPAA 707 VD + RI LS+K Sbjct: 519 VDPKAKRISLSLKRVQRDPWYDVVEGLREG 548 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 16/203 (7%) Query: 518 IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG---- 573 + A + +R +L +Q + + GG Sbjct: 429 EIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLGGVDGL 488 Query: 574 ----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVG 622 + + + I D+ V + D + + + ++ + G Sbjct: 489 IHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPWYDVVEGLREG 548 Query: 623 RVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ 682 GKVT++ FGAFV + G EGLVH+S++AD+RV + +++GQ V VK+L +D++ Sbjct: 549 MTVAGKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTVKILGIDKE 608 Query: 683 -GRIRLSIKEATEQSQPAAAPEA 704 RI LSI +A + ++ A Sbjct: 609 NKRISLSIAQAQQDAERADYQRF 631 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 I K + + +++ +E G + G+V + FV IG EG++ ++++A Sbjct: 264 IIEEVYSKMQEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAY 323 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS-IKEATEQSQPAAAPEAPAAEQG 710 E +D + G E+ V VL + G ++LS +K + A A E Sbjct: 324 PVPENASDVVSEGDEIDVYVLAPEGDDGPVKLSKVKADNIVAWEKLQAAAQANETV 379 >UniRef50_D2L2R4 RNA binding S1 domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2R4_9DELT Length = 507 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 100/273 (36%), Gaps = 20/273 (7%) Query: 454 GVPIKAAVAGIA-MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG--ISALQMDIK 510 GVP++ V G E + + + D G I+ + D K Sbjct: 116 GVPVEGKVTASRKGGFDVEILHRRAFCPVSQIDLAFTDNPEVHVGQTYTFLITTFERDGK 175 Query: 511 IEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG 570 +++ +Q R I A + F + + Sbjct: 176 NIVVSRRKLQEQERAESELRFLESVNPGDVIPAVVTRFAAFGAFVEVAPGLEGLVHLS-- 233 Query: 571 KGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKA----------KHAIRRIEEITAEIE 620 + + E+ +++ TVK+ + D +K + + + + Sbjct: 234 ---ELSWSRAEKAEDAVDLGQAVTVKVLSFDRDKKGRPRISLSIKQAGPDPWDTVGEKFA 290 Query: 621 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEV 679 G GKVTR+ DFGAFV I G EGL+H+S+++ +R+ K +D + G+ V V V +V Sbjct: 291 AGDRVEGKVTRLADFGAFVEIAPGIEGLIHVSEMSHVRRIAKPSDVVSPGETVTVAVKDV 350 Query: 680 D-RQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 D + RI LS+KE A + E Sbjct: 351 DLSKRRISLSLKEVAGDPWAAVSDTFAIGSTVE 383 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 105/284 (36%), Gaps = 18/284 (6%) Query: 441 ASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRD 500 A++ ASLA + + + G + + + + G D +D A + Sbjct: 18 AALMEASLAERGGEISVGDRITGPVIAVTDTTVVVDTGTKLDGVADKSEFLDENGALTIS 77 Query: 501 GISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKI 560 A+ + + ++ +VAL++A + ++ + A R + Sbjct: 78 EGEAVTLYV----VSVRGDEVALSKALTGQGGAEALLAAFEAGVPVEGKVTASRKGGFDV 133 Query: 561 NPDKIKDVIGKGGSVIRALTEETGTTI---------EIEDDGTVKIAATDGEKAKHAIRR 611 + + A T+ + E DG + + + + Sbjct: 134 EILHRRAFC-PVSQIDLAFTDNPEVHVGQTYTFLITTFERDGKNIVVSRRKLQEQERAES 192 Query: 612 IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 + G V VTR FGAFV + G EGLVH+S+++ R EK D + +GQ Sbjct: 193 ELRFLESVNPGDVIPAVVTRFAAFGAFVEVAPGLEGLVHLSELSWSRAEKAEDAVDLGQA 252 Query: 672 VPVKVLEVDRQG----RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 V VKVL DR RI LSIK+A + A ++ E Sbjct: 253 VTVKVLSFDRDKKGRPRISLSIKQAGPDPWDTVGEKFAAGDRVE 296 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 20/183 (10%) Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV-----IGKGGSVI 576 + ++ K R I ++QA P + E ++ ++ D I G + Sbjct: 259 SFDRDKKGRPRISLSIKQAGPDPWDTVGEKFAAGDRVEGKVTRLADFGAFVEIAPGIEGL 318 Query: 577 RALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEV 621 ++E + + + TV + D K + ++ ++ + Sbjct: 319 IHVSEMSHVRRIAKPSDVVSPGETVTVAVKDVDLSKRRISLSLKEVAGDPWAAVSDTFAI 378 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR 681 G G V +G F+ + G GL+ S++ D + + G V V V E+D Sbjct: 379 GSTVEGTVENRQQYGLFINLAPGVTGLLPASKLRDALEPAPYEKVSSGDTVSVVVSEIDT 438 Query: 682 QGR 684 + R Sbjct: 439 EKR 441 >UniRef50_C5ES10 RNA binding S1 domain-containing protein n=2 Tax=Clostridiales RepID=C5ES10_9FIRM Length = 258 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 + ED +++ L + EG + ++ I ++ Sbjct: 22 PVETMEDFAAELEASYQTLNKRHIELAEEESGEGAKWAQFAQMMEDKTVVKVKISEAVKG 81 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 + ++ F P +K++D GK E T++ E V Sbjct: 82 GVVTSLEEVRAFIPASQLSTEYVEKLEDWQGK-------YVECVIITVDPEKKRLVLSGR 134 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 K A ++ A+ + G V G V I +GAF+ + G +GL+HISQI+ +R+ Sbjct: 135 EVERGKKEAEKQ--ARMAQFKAGDVVEGTVDSIKPYGAFIKLDEGVDGLLHISQISTQRI 192 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 + L GQ V VK+L D G++ LS++ EQ+ A E Sbjct: 193 KHPGAVLTEGQTVKVKILSTD-NGKLSLSMRALAEQTADQEAHE 235 >UniRef50_C1A406 30S ribosomal protein S1 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A406_GEMAT Length = 585 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 106/265 (40%), Gaps = 18/265 (6%) Query: 460 AVAGIAMGLVKEG---DNYVVLSDILGDEDHLGDMDF--KVAGSRDGISALQMDIKIEGI 514 V G + +K G D V + + G + L + ++ G + ++++ + I Sbjct: 146 PVEGTLVKKIKGGVVVDLMGVDAFLPGSQIALRRVPNIDELLGQKYEFKIIKLNKRRRNI 205 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 +V L + + L M++ I+ + ++ Sbjct: 206 VVSR-RVILETERAGKREKL--MKELAKDQVRKGVVKNITDFGAFIDLGGVDGLLHIT-D 261 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTG 627 + ++I + +K+ D E+ + ++ +++ A+ VG +G Sbjct: 262 MSWGRISHPSEMVQIGMELEIKVLDIDWERERISLGLKQLQSYPWKDVAAKYPVGTRVSG 321 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRI 685 KV I ++GAF+ + G EGLVHIS+++ R V + + +G+ + VL+VD + +I Sbjct: 322 KVVSITNYGAFIELEPGIEGLVHISEMSWTRNVRHPSKIVSIGEAIEAVVLKVDETEEKI 381 Query: 686 RLSIKEATEQSQPAAAPEAPAAEQG 710 L +K+ + + P + Sbjct: 382 SLGMKQTEQDPWVILPLKYPVGTRI 406 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 5/136 (3%) Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 I ++ E + D+ KI+ + + + + VG GKV + F Sbjct: 360 IVSIGEAIEAVVLKVDETEEKISLGMKQTEQ---DPWVILPLKYPVGTRINGKVRNLTSF 416 Query: 636 GAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEAT 693 GAFV I G +GL+HIS ++ KRV+ ++ ++ G V V +L +D RI L +K+A Sbjct: 417 GAFVEIEPGIDGLIHISDMSWTKRVQHPSEVVKKGDAVDVVILNIDSENKRISLGLKQAE 476 Query: 694 EQSQPAAAPEAPAAEQ 709 E P + Sbjct: 477 EDPWLRIGETYPVGTE 492 Score = 64.6 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 68/210 (32%), Gaps = 22/210 (10%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGG 573 ++ + + I M+Q P + P I + G Sbjct: 367 IEAVVLKVDETEEKISLGMKQTEQDPWVILPLKYPVGTRINGKVRNLTSFGAFVEIEPGI 426 Query: 574 SVIRAL--------TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAE 618 + + + ++ D V I D E + + I Sbjct: 427 DGLIHISDMSWTKRVQHPSEVVKKGDAVDVVILNIDSENKRISLGLKQAEEDPWLRIGET 486 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVL 677 VG GKV R++D G V +G EG V +SQ+ + V D+ ++VL Sbjct: 487 YPVGTELPGKVVRLMDKGVVVDLGNDIEGFVPVSQLNPEGTVTNPADFTYEAMNFVMRVL 546 Query: 678 EVDR-QGRIRLSIKEATEQSQPAAAPEAPA 706 EVD RI L++ E+ P A + Sbjct: 547 EVDPIHRRIVLAVTSIPEEQPPKPAEPSKV 576 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 13/151 (8%) Query: 554 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIE 613 + + K G + L E + +G+V ++ + + E Sbjct: 85 KSEGTIPLEEFKDMPDLKAGDEVEVLLEHLE-----DQEGSVVLSKKKADFMRV----WE 135 Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 I E + G + + + G V + G + + SQIA +RV + + L GQ+ Sbjct: 136 RIRVAYESDQPVEGTLVKKIKGGVVVDLM-GVDAFLPGSQIALRRVPNIDELL--GQKYE 192 Query: 674 VKVLEVDRQGR-IRLSIKEATEQSQPAAAPE 703 K+++++++ R I +S + E + + Sbjct: 193 FKIIKLNKRRRNIVVSRRVILETERAGKREK 223 >UniRef50_B2A4N7 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4N7_NATTJ Length = 705 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 17/275 (6%) Query: 450 LMDAGVPIKAAVAG-IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD 508 LM+ IKA V + GLV + + H K G + +++D Sbjct: 409 LMENDEEIKAQVTEEVKGGLVVDLGQLQGFIPASHVDIHYVPDLSKYVGEELRLKPIELD 468 Query: 509 IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV 568 I + L Q + + + ME D + I+ I + Sbjct: 469 RSRNKIVLSQ-KNILEQEQEEKKN--KTMETITEGDIVDGTVKRLTDFGAFIDIGGIDGL 525 Query: 569 IGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEV 621 + + + + +E ++ VK+ + D E + ++ E + + Sbjct: 526 CHIS-QISHSRIDHPESELETGENVKVKVLSLDPENERISLSIKEAQPDPFETFMKQYKS 584 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-D 680 G + GKV R V+FGAF+ I G EGL HISQ++D V K D + G +V VK+L + D Sbjct: 585 GDIVQGKVVRTVNFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTVKILSIDD 644 Query: 681 RQGRIRLSIKEATEQSQPAAAP----EAPAAEQGE 711 +Q ++ LSIKEA +S+ + +++ E Sbjct: 645 QQKKVSLSIKEAQGKSKKEQEQEEFAKYQDSQEEE 679 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 8/196 (4%) Query: 510 KIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI 569 + +++ + A + V + + + + +++ Sbjct: 303 ESTQESQDELMKATEDSADKLDRGQVVKGKVVKVTEDEAMIDVGYKFEGSVPVNEMPIKE 362 Query: 570 GKGGSVIRALTEETGTTI-EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 G+ + + +E + +++D+ I + + E++ +E + Sbjct: 363 GESLEDLLSEGDEIDVKVVKVDDEEGQLILSKKWADKDK---QWEQLEQLMENDEEIKAQ 419 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRL 687 VT V G V +G +G + S + V ++ Y +G+E+ +K +E+DR + +I L Sbjct: 420 VTEEVKGGLVVDLGQ-LQGFIPASHVDIHYVPDLSKY--VGEELRLKPIELDRSRNKIVL 476 Query: 688 SIKEATEQSQPAAAPE 703 S K EQ Q + Sbjct: 477 SQKNILEQEQEEKKNK 492 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 2/138 (1%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 I+ + + E ++ + E ++ E+ +++ G+V GKV ++ + Sbjct: 279 TIKEVVGKMREFEEQNENLNTNSDESTQESQDELMKATEDSADKLDRGQVVKGKVVKVTE 338 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DRQGRIRLSIK-EA 692 A + +G EG V ++++ K E + D L G E+ VKV++V D +G++ LS K Sbjct: 339 DEAMIDVGYKFEGSVPVNEMPIKEGESLEDLLSEGDEIDVKVVKVDDEEGQLILSKKWAD 398 Query: 693 TEQSQPAAAPEAPAAEQG 710 ++ E+ Sbjct: 399 KDKQWEQLEQLMENDEEI 416 >UniRef50_Q1MQB8 Ribosomal protein S1 n=2 Tax=Desulfovibrionaceae RepID=Q1MQB8_LAWIP Length = 574 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 90/255 (35%), Gaps = 22/255 (8%) Query: 474 NYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHI 533 Y + + +D + D + + + ++ I + + +R + Sbjct: 134 GYTIDLRGVEAFLPGSHVDLRPVPDMDMLVNQEYEFRVLKINRRR-----SNVIVSRRVL 188 Query: 534 LGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGT 585 L + + N + + GG + Sbjct: 189 LEEERDSKRQDLLQTISEGQVVVGKVKNVTEYGVFVDLGGLDGLLHITDMSWKRIRHPRE 248 Query: 586 TIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAF 638 + + + +K+ + D E K ++ ++IT + GKVT +VD+G F Sbjct: 249 MVNLGQELELKVLSFDKENQKVSLGLKQLVPDPWQDITERFPETSHHVGKVTNLVDYGVF 308 Query: 639 VAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQS 696 V + G EGLVHIS+++ R + + + G EV V +L +D+ + RI L +K+ Sbjct: 309 VELESGVEGLVHISEMSWTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNP 368 Query: 697 QPAAAPEAPAAEQGE 711 + P E Sbjct: 369 WELVGEKYPEGTILE 383 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 20/261 (7%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 + +G VK Y V D+ G + L D R + + ++E + Sbjct: 209 VVVGKVKNVTEYGVFVDLGGLDGLLHITDMSWKRIRHPREMVNLGQELE-LKVLSFDKEN 267 Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTE-- 581 + ++ Q I + S ++ + ++ G G V ++E Sbjct: 268 QKVSLGLKQLVPDPWQDITERFPETSHHVGKVTNLVDYGVFVELESGVEGLV--HISEMS 325 Query: 582 ------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGK 628 + D+ V I D +K + ++ E + + G + G Sbjct: 326 WTRKLRHPSQMVHQGDEVEVVILGIDQDKKRISLGMKQVKPNPWELVGEKYPEGTILEGV 385 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIR 686 V I +FG F+ I G +GL+H+S I+ K+V + ++G V KVL VD++ + Sbjct: 386 VKNITEFGMFIGIEDGIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQENEKFT 445 Query: 687 LSIKEATEQSQPAAAPEAPAA 707 L IK+ TE A P Sbjct: 446 LGIKQLTEDPWSNAPSVYPVG 466 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 21/211 (9%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--S 574 + ++V + + I M+Q P + E P ++ I + G Sbjct: 341 DEVEVVILGIDQDKKRISLGMKQVKPNPWELVGEKYPEGTILEGVVKNITEFGMFIGIED 400 Query: 575 VIRALT-----------EETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEIT 616 I L ++ D K+ D E K Sbjct: 401 GIDGLIHVSDISWTKKVRHPNELFKVGDTVQAKVLTVDQENEKFTLGIKQLTEDPWSNAP 460 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 + VG + G +T I DFG FV + G EGLVH+S+++ K+++ ++ + G+E+ K+ Sbjct: 461 SVYPVGGIVKGIITNITDFGLFVEVEEGIEGLVHVSELSSKKIKSPSEIYKDGEEIQAKI 520 Query: 677 LEVD-RQGRIRLSIKEATEQSQPAAAPEAPA 706 + V + R+ LSIK+ E + + E Sbjct: 521 IHVSAEERRLGLSIKQLKEDEEHRKSREYSR 551 >UniRef50_Q84T68 Os03g0854200 protein n=9 Tax=Magnoliophyta RepID=Q84T68_ORYSJ Length = 238 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 15/233 (6%) Query: 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGE 371 E R DGR + +R L R HGSA + +G+T L + GE Sbjct: 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRK------GE 55 Query: 372 RTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEI 431 + + P G+ G E + KR + ++ T V+ ++ Sbjct: 56 NPEKASIEVVWKPM-TGQIGKQ------EKEYEMTLKRTLQSICLLTVHPNTTTSVILQV 108 Query: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491 ++GS ++ AL+ AG+P+K I G++++G+ V+L +E L Sbjct: 109 VGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGE--VILDTNKAEEQQLKSF 166 Query: 492 DFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 V + ++ + + E ++ + ++ + +E+ + A Sbjct: 167 AHLVFPNSRKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAAS 219 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 36/233 (15%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK---PGQDFFPLTVNYQERTYAA 70 + + R A + + DT V V G K + + V ++ T Sbjct: 15 RPFSCTRNPLDR-AHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQI 73 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVA 130 G+ + E E + R + + I L VI VV + + P A Sbjct: 74 GK----------QEKEYEMTLKRTL-QSI-CLLTVHPNTTTSVILQVVGNDGSLLPC--A 119 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYI-NDQYVL--NPTQDELKESKLDLVVAGTEAAVL 187 + AAL +GIP A G + + + +L N +++ +S LV + + Sbjct: 120 INACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSAS 179 Query: 188 MVESEAQL---------------LSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 E + +SE+ + G + + +++ Sbjct: 180 SKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQK 232 >UniRef50_C9RMY1 Ribosomal protein S1 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMY1_FIBSS Length = 590 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 112/309 (36%), Gaps = 32/309 (10%) Query: 425 VRVVSEITES-NGSSSMASVCGASLALMD---AGVPIKAAVAGIAMGLVKEGDNYVVLSD 480 + V E E +G ++ + + D A V G +K G V+ D Sbjct: 88 IEVFVEKLEDEDGRLILSKQKADFVRVWDRIHAAFENNEVVRGTLTKRIKGG----VVVD 143 Query: 481 ILGDEDHLGD--MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 + G + L +D + + + + D+K+ + A +R +L Sbjct: 144 LFGIDAFLPGSQIDLRQIPDINALIGQEFDLKV-----IKVNKARRNIVVSRRVVLEEER 198 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGTTIEIE 590 + E I N I GG + +++ Sbjct: 199 NKQRGDVLETLEKNQVRKGIVKNITDFGAFIDLGGVDGLLHITDMSYKRINHPSEMLQLG 258 Query: 591 DDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 + V + + +K + ++ ++I G + GKV I D+GAFV + Sbjct: 259 QEVEVMVLDFNDKKERISLGMKQLKPHPWKDIAERYPEGAIVKGKVVSITDYGAFVELDS 318 Query: 644 GKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAA 701 G EGL+H+S+++ + V+ + L +GQEV VL+V+ RI L +K+ + Sbjct: 319 GVEGLIHVSEMSWTQHVKHPSKILTVGQEVEAVVLKVEEDAERISLGMKQLESDPWDSIE 378 Query: 702 PEAPAAEQG 710 E P + Sbjct: 379 TELPPGARV 387 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 30/269 (11%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 + G+VK ++ D+ G + L D LQ+ ++ +V + Sbjct: 214 VRKGIVKNITDFGAFIDLGGVDGLLHITDMSYKRINHPSEMLQLGQEV--------EVMV 265 Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI-----GKGGSVIRA 578 + I M+Q P DI+E P +K I D G + Sbjct: 266 LDFNDKKERISLGMKQLKPHPWKDIAERYPEGAIVKGKVVSITDYGAFVELDSGVEGLIH 325 Query: 579 LTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGR 623 ++E + + + + + + + ++ + I E+ G Sbjct: 326 VSEMSWTQHVKHPSKILTVGQEVEAVVLKVEEDAERISLGMKQLESDPWDSIETELPPGA 385 Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ 682 G++ I FGAFV I G +GL+H+S ++ K++ + ++ G +V VL VD++ Sbjct: 386 RVVGEIRNIASFGAFVEIKEGVDGLIHVSDMSWTKKITHPNEMVKKGDKVECVVLAVDKE 445 Query: 683 G-RIRLSIKEATEQSQPAAAPEAPAAEQG 710 RI LS+K TE + P + Sbjct: 446 KRRISLSMKHLTEDPWDSIDSTYPVDSEV 474 Score = 87.7 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 12/143 (8%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRI 632 ++ D + A D EK + ++ + I + V GK+ R+ Sbjct: 422 ITHPNEMVKKGDKVECVVLAVDKEKRRISLSMKHLTEDPWDSIDSTYPVDSEVKGKIVRM 481 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSI-- 689 +D G V + G EG + +S++ + ++ D ++G EVP V E+D+ R I LS+ Sbjct: 482 LDRGVVVELADGIEGFIPVSKLTAEYIKVPADAFKVGDEVPAVVTEIDQNNRKIYLSVVD 541 Query: 690 --KEATEQSQPAAAPEAPAAEQG 710 K A E G Sbjct: 542 YFKNRESAELKAWMDSHKPGENG 564 >UniRef50_A8ZTZ3 RNA binding S1 domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTZ3_DESOH Length = 492 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 90/233 (38%), Gaps = 16/233 (6%) Query: 489 GDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548 G++ KV D D +I ++ A + + V + I +G Sbjct: 77 GELPHKVGDRLDLYVVDTRDGEIRLSKAMGAGSGVDMLYEAHQNRIPVEGKVIETCKGGF 136 Query: 549 SEF----APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 +++ ++ G+V L E G + Sbjct: 137 RIQVMGQTAFCPVSQMDVHYVEKPEEFVGAVFPFLIERIEA------RGKNLVVNRRRLL 190 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + E+ A+ G + G+V RI+ +GAF+ + G EG+VHIS+++ RV ++ Sbjct: 191 EQEQAEQREKFLAQARPGDIVDGRVVRIMPYGAFMELQPGVEGMVHISELSWSRVGDPSE 250 Query: 665 YLQMGQEVPVKVLEVDRQG------RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 +G+ +PV++L +DR G +I LS K+A + ++ E Sbjct: 251 VTAVGEVLPVRILAIDRTGSKTGGLKISLSAKQAAVDPWKTVGEKYKEGDKIE 303 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 18/271 (6%) Query: 455 VPIKAAVA-GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 +P++ V G + + + H + + G+ +++ + + Sbjct: 122 IPVEGKVIETCKGGFRIQVMGQTAFCPVSQMDVHYVEKPEEFVGAVFPFLIERIEARGKN 181 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 + + L Q + + + + G + P +++ P V Sbjct: 182 LVVNR-RRLLEQEQAEQREKFLAQARPGDIVDGRVVRIMPYGAFMELQPGVEGMV--HIS 238 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGE------------KAKHAIRRIEEITAEIEV 621 + + + + + V+I A D + A+ + + + + Sbjct: 239 ELSWSRVGDPSEVTAVGEVLPVRILAIDRTGSKTGGLKISLSAKQAAVDPWKTVGEKYKE 298 Query: 622 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD 680 G GKVTR DFGAFV + G EGLVHIS+++ +RV K D + G V V V VD Sbjct: 299 GDKIEGKVTRCADFGAFVEVEPGIEGLVHISEMSHTRRVVKAEDVARPGDRVAVMVTSVD 358 Query: 681 R-QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 R+ LSIK A A + Sbjct: 359 PVNRRLSLSIKAAEGDPWLTVANRMAVGQTV 389 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 25/197 (12%) Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG--- 570 + I+ + +K L I +QA P + E I+ + D Sbjct: 258 LPVRILAIDRTGSKTGGLKISLSAKQAAVDPWKTVGEKYKEGDKIEGKVTRCADFGAFVE 317 Query: 571 --KGGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIE 613 G + ++E + D V + + D + ++ Sbjct: 318 VEPGIEGLVHISEMSHTRRVVKAEDVARPGDRVAVMVTSVDPVNRRLSLSIKAAEGDPWL 377 Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT--DYLQMGQE 671 + + VG+ +G V R++DFG F+++ G GL+ S + +R + L+ Sbjct: 378 TVANRMAVGQTVSGTVERVLDFGCFISLAPGVTGLMPRS--SMERAADPKAMEKLKADDP 435 Query: 672 VPVKVLEVD-RQGRIRL 687 V VK+ ++ +I L Sbjct: 436 VTVKIETINLADKKISL 452 >UniRef50_A3ZTD7 30S ribosomal protein S1 n=2 Tax=Bacteria RepID=A3ZTD7_9PLAN Length = 536 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 I +I P + ++ G ++ L E + + + K +E Sbjct: 268 IPASQIAPHHVTNMEDYLGQKLQCLVTEANP------ERRNLVLSARAVAEKAKEDSRKE 321 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 ++VG++ G VTR+ DFGAFV IG G +GLVH+SQI+ RV+ +D L GQ V V Sbjct: 322 TMVTLQVGQMRDGTVTRLQDFGAFVDIG-GVDGLVHVSQISWDRVKHPSDALSEGQAVRV 380 Query: 675 KVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 KV ++D + G+I LSI++ E A E Sbjct: 381 KVTKIDPETGKIGLSIRDTLENPWQKVAEEFSVGAII 417 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 8/143 (5%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYT 626 + + + VK+ D E K + +++ E VG + Sbjct: 359 QISWDRVKHPSDALSEGQAVRVKVTKIDPETGKIGLSIRDTLENPWQKVAEEFSVGAIIN 418 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RI 685 GKVT+I+DFGAFV I G EGLVH+S+++ RV ++ L+ G++V VKV+ +D++ RI Sbjct: 419 GKVTKIMDFGAFVEIAPGIEGLVHVSEVSHTRVSRIESVLKAGEKVEVKVVNIDKEKRRI 478 Query: 686 RLSIKEATEQSQPAAAPEAPAAE 708 LSIK + + + E Sbjct: 479 GLSIKALSPAPASKSGGKKKDEE 501 Score = 43.8 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 15/241 (6%) Query: 470 KEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 ++ D + D+ E +M+ S ++ K++ I +E+ + AL Sbjct: 89 QDEDPTAIPDDLSSLETE-SEMERLPVSSDGRVAVPNRRQKLDDIEREV-EAALGGLSLD 146 Query: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI 589 + Q I+ ++ + D+ G+ + + EI Sbjct: 147 EMITSESAMQGISGKTLEVDSRLNATVARVHREEVFIDLPGQNQGFVSLRS--FVAPPEI 204 Query: 590 EDDGTVKIAATDGEK-AKHAIRRIEEI----TAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 V I D E+ A+ + ++ G + V + G G Sbjct: 205 GAKLEVVIIKYDREQGLYEALVPGSSVSVVDWGDLTEGILVDAVVDGVNKGGL--ECAVG 262 Query: 645 K-EGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAP 702 + G + SQIA V + DYL GQ++ V E + + R + LS + E+++ + Sbjct: 263 QARGFIPASQIAPHHVTNMEDYL--GQKLQCLVTEANPERRNLVLSARAVAEKAKEDSRK 320 Query: 703 E 703 E Sbjct: 321 E 321 >UniRef50_Q49XT0 30S ribosomal protein S1 n=6 Tax=Staphylococcaceae RepID=RS1_STAS1 Length = 393 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 111/253 (43%), Gaps = 15/253 (5%) Query: 460 AVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIM 519 ++ ++ + + V + D +G + D + +S Q++ + + E + Sbjct: 45 PISQLSTHHIDNPSDAVKVGDEIGAYVTKVEYDEENETGAYILSKRQLETEK---SYEFL 101 Query: 520 QVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL 579 Q L+ + + V++ + G + I+ D I+D G V++ Sbjct: 102 QEQLDNNQTIEAKVTEVVKGGLVVDVGQRG----FVPASLISTDFIEDFSDFEGQVLKLK 157 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 EE + V ++ E ++A + +E+ + G V GKV R+ +FGAFV Sbjct: 158 VEELDPA-----NNRVILSRKAVEALENA-EKKDELLESLNEGDVIEGKVARLTNFGAFV 211 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQP 698 IG G +GLVH+S+++ + V+ D + +G+ V VK+ VD+ RI LSIK+ Sbjct: 212 DIG-GVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFE 270 Query: 699 AAAPEAPAAEQGE 711 + E + E Sbjct: 271 SIKGEFNEGDVIE 283 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 16/222 (7%) Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 + + + + ++ + E + A N+ +R + + + Sbjct: 133 VPASLISTDFIEDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLN 192 Query: 551 FAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATDG 602 I + GG + + + I + VKI + D Sbjct: 193 EGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252 Query: 603 EKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 + + ++ E I E G V G V R+ +FGAFV I G +GLVHIS+I+ Sbjct: 253 DSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEIKPGVQGLVHISEIS 312 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQS 696 + ++ L+ GQ V VKVL VD RI LSIK Sbjct: 313 HSHIGSPSEALEPGQVVSVKVLGVDVENERISLSIKATLPNE 354 Score = 59.2 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVTDYLQ 667 E + +I+ G TG+V I + VA+ G K G++ ISQ++ ++ +D ++ Sbjct: 3 EEFNESMINDIKEGDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVK 62 Query: 668 MGQEVPVKVLEV--DRQGRIR---LSIKEAT-EQSQPAAAPEAPAAEQGE 711 +G E+ V +V D + LS ++ E+S + + E Sbjct: 63 VGDEIGAYVTKVEYDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIE 112 >UniRef50_Q027A8 SSU ribosomal protein S1P n=2 Tax=Acidobacteria RepID=Q027A8_SOLUE Length = 572 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%) Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALT 580 AL +A + ILG + + + + ++ G IR Sbjct: 119 SALEKAFAEKAAILGTITAVVKGGVSVDVGVRAFMPASRSGARDAAEMEKLVGQEIRCRI 178 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 +++ D+ V E+ + A + E+ ++++ G + G + + D+GAFV Sbjct: 179 ----IKLDVADEDLVVDRRAVLEEEERASK--EQRYSQVKEGEIVHGTIRSLTDYGAFVD 232 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPA 699 IG G + L+H++ I+ RV K D L +G +V K+L+VD + RI L +K+ Sbjct: 233 IG-GVDALLHVADISWGRVNKPADVLNVGDKVEAKILKVDPAKKRISLGLKQLQPHPWDL 291 Query: 700 AAPEAPAAEQG 710 A + E+ Sbjct: 292 VADKYKVGERV 302 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 17/210 (8%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG----- 573 + VA R +L E+A R + +H + + GG Sbjct: 181 LDVADEDLVVDRRAVLEEEERASKEQRYSQVKEGEIVHGTIRSLTDYGAFVDIGGVDALL 240 Query: 574 ---SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGR 623 + + + + D KI D K + ++ + + + +VG Sbjct: 241 HVADISWGRVNKPADVLNVGDKVEAKILKVDPAKKRISLGLKQLQPHPWDLVADKYKVGE 300 Query: 624 VYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-R 681 TG VTR+ DFGAFV + G EGLVH+S+++ K++ + D ++ G +V V VL V+ Sbjct: 301 RVTGSVTRVTDFGAFVELEKGIEGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVLGVNAA 360 Query: 682 QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RI L +K+A AA + E Sbjct: 361 DRRISLGLKQALGDPWADAAQKLAVGTVIE 390 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 22/214 (10%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGG 573 ++ + + A+ I ++Q P +++ + + ++ D KG Sbjct: 263 VEAKILKVDPAKKRISLGLKQLQPHPWDLVADKYKVGERVTGSVTRVTDFGAFVELEKGI 322 Query: 574 SVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAE 618 + L+E ++ D V + + + ++ + + Sbjct: 323 EGLVHLSEMSWSKKIRRPADMVKPGDQVEVVVLGVNAADRRISLGLKQALGDPWADAAQK 382 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVL 677 + VG V G VT I FGAFV + G EG+VH+ I+ +KR+ D +++GQ V +VL Sbjct: 383 LAVGTVIEGPVTSIQKFGAFVQVAEGVEGMVHVGDISAEKRINHPQDVVKVGQVVKAQVL 442 Query: 678 EVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 E+D + R+RL +K+ S E + Sbjct: 443 ELDVEKRRLRLGMKQLIPTSLDEYIAEHKEGDVV 476 Score = 44.5 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 620 EVGRV-YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 E G+ G V I A + IG EG++ ++ + D +++G ++PV + Sbjct: 44 EPGKKGLEGTVVAITAEAALLDIGFKTEGIIPLTDF-----QSTGDTVKVGDKLPVSIKG 98 Query: 679 VDRQGRIRLS-IKEATEQSQPAAAPEAPA 706 D +G LS +K + A Sbjct: 99 RDPEGYYELSRLKVERPKDWSALEKAFAE 127 >UniRef50_Q4EP69 Ribosomal protein S1, putative (Fragment) n=1 Tax=Listeria monocytogenes str. 1/2a F6854 RepID=Q4EP69_LISMO Length = 355 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + + ++D G+ + T +E E + I + + + Sbjct: 189 VPASLVEDHFVEDFADYKGTTL------TFKVVEFEPENNRVILSHRAVVETEKASQKQA 242 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +EI+ G V G V R+ +FGAFV IG G +GLVHISQI+ K + + L+ GQ+V V Sbjct: 243 LLSEIKEGDVIEGTVQRLANFGAFVDIG-GVDGLVHISQISYKHIATPQEVLEEGQKVTV 301 Query: 675 KVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KV+ +D + RI LSIK +A E Sbjct: 302 KVIGIDPENERISLSIKATLPGPWDGITEKAQVGSVLE 339 Score = 66.1 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 3/137 (2%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 R ++ ++++ + + + + E G TG VT + D Sbjct: 33 RKTSQADEASVKVASELEIPKIRLTNGGLHMSEDLFDVEVRNFEEGDKVTGTVTSVEDKQ 92 Query: 637 AFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT-E 694 +V I G +G+V IS++++ VE +D + +G + + V +V + LS ++ E Sbjct: 93 VYVGIPGSKLDGVVPISELSNIHVETASDVVSVGDTLDLIVTKV-EDDILVLSKRKVDAE 151 Query: 695 QSQPAAAPEAPAAEQGE 711 ++ + + E E Sbjct: 152 KASDDIKAKFESGEVFE 168 Score = 56.1 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 23/212 (10%) Query: 505 LQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDK 564 L M + + + + + + + P + P I+ + Sbjct: 61 LHMSEDLFDVEVRNFEEG--DKVTGTVTSVEDKQVYVGIPGSKLDGVVPISELSNIHVET 118 Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV 624 DV+ G + + + I + V A + ++I A+ E G V Sbjct: 119 ASDVVSV-GDTLDLIVTKVEDDILVLSKRKV-----------DAEKASDDIKAKFESGEV 166 Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQG 683 + V+ +V G V + G V S + D VE DY G + KV+E + Sbjct: 167 FEAVVSDVVKGGLVVDL--GVRAFVPASLVEDHFVEDFADY--KGTTLTFKVVEFEPENN 222 Query: 684 RIRLSIKEATEQSQPAAAP----EAPAAEQGE 711 R+ LS + E + + E + E Sbjct: 223 RVILSHRAVVETEKASQKQALLSEIKEGDVIE 254 Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 15/139 (10%) Query: 518 IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG---- 573 + N+ + ++ + + + I + GG Sbjct: 216 EFEPENNRVILSHRAVVETEKASQKQALLSEIKEGDVIEGTVQRLANFGAFVDIGGVDGL 275 Query: 574 ----SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVG 622 + +E TVK+ D E + ++ + IT + +VG Sbjct: 276 VHISQISYKHIATPQEVLEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGITEKAQVG 335 Query: 623 RVYTGKVTRIVDFGAFVAI 641 V GKV R+V FGAFV I Sbjct: 336 SVLEGKVVRLVTFGAFVEI 354 >UniRef50_Q1IHI9 SSU ribosomal protein S1P n=6 Tax=Bacteria RepID=Q1IHI9_ACIBL Length = 609 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 92/247 (37%), Gaps = 14/247 (5%) Query: 479 SDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVME 538 DI+G L + R+ + ++++ I + + ++ L + Sbjct: 174 VDIMGARAFLPGSQVDLRPVRNLDALKGHELEVRIIKLNKKRGNIVVSRKQILEEEQNDK 233 Query: 539 QAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDG 593 ++ + + D+ G G + +++ D Sbjct: 234 KSKTLEHLNEDAVLTGTVKNLTDYGAFVDLGGIDGLLHITDMSWGRLTHPRDLVQVGDQI 293 Query: 594 TVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 VK+ D +K + ++ + + +G G+V + D+GAF+ + G E Sbjct: 294 QVKVLKFDRDKQRVSLGFKQLTPDPWLDASERYPIGARVHGRVISVTDYGAFIELEQGIE 353 Query: 647 GLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEA 704 GLVH+S++ KR++ + + +G +V VL V+ + RI L +K+ + + Sbjct: 354 GLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLKQLETNPWESLHEKF 413 Query: 705 PAAEQGE 711 P E Sbjct: 414 PVGGVVE 420 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 9/155 (5%) Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITA 617 I+ ++ + + + D + + ++ + ++ E + Sbjct: 352 IEGLVHVSEMTWSKRMKHPSKIVNVGDQVDAVVLNVNPQERRISLGLKQLETNPWESLHE 411 Query: 618 EIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKV 676 + VG V GKV + DFGAF+ I G +GLVH+S ++ KRV+ ++ L+ G +V V Sbjct: 412 KFPVGGVVEGKVRNLTDFGAFIEIEDGIDGLVHVSNLSWTKRVKHPSEVLKKGDKVKAVV 471 Query: 677 LEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQG 710 L ++ R+ L +K+ + Sbjct: 472 LAIEPDNRRLSLGVKQLQPDVWETFFETHRVGDII 506 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 10/137 (7%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 + ++ D + A + + + ++ E VG + GKV Sbjct: 452 KRVKHPSEVLKKGDKVKAVVLAIEPDNRRLSLGVKQLQPDVWETFFETHRVGDIIHGKVL 511 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSI 689 R+ FGAF+ I G EGL H S+ +D+ + L+ GQE K+++++ + ++ LS+ Sbjct: 512 RLASFGAFIEIADGVEGLCHNSEASDEHGAPLK--LEPGQEFDFKIIKMNPDEKKVGLSL 569 Query: 690 KEATEQSQPAAAPEAPA 706 + E++ A Sbjct: 570 RAVGEEASRVEIENYKA 586 >UniRef50_B5YEY5 Ribosomal protein S1, putative n=2 Tax=Dictyoglomus RepID=B5YEY5_DICT6 Length = 552 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 10/179 (5%) Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIG--KGGSVIRALTEETGTTIEIEDDGTVKIAA 599 A I K+ ++IG + ++ ++++ D K+ + Sbjct: 274 EKYPEGSIIKAEIIKISGGIVVKVDNLIGYVPMSEISWGRPQDVKNSLKVGDKVKAKVLS 333 Query: 600 TDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHIS 652 D K E I ++G + +GKVT I DFG F+ I G EGL+ Sbjct: 334 VDDLNQKIFLSIKQVEPNPWEVIDQNYKIGEIVSGKVTNITDFGIFIEIKPGLEGLIPRK 393 Query: 653 QIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 I+ +R+ ++D + G + K++E+D++ ++ LS ++ + + + Sbjct: 394 LISWERISNISDIFKPGDFIEAKIIEIDKENKKLTLSRRDLLKDPWEDIDEKYREGQNI 452 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 9/227 (3%) Query: 485 EDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAP 544 E + K +DG+ + +E E + A + + ++ + Sbjct: 64 EIDSIPVVIKHVNYKDGVITVSNKKAVENKIWEELLWAYENNQPIQGKVINYNGRGFILE 123 Query: 545 RGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEK 604 + E I + P K I E G I + I + Sbjct: 124 INNEVEGFIPAKEIDVPPIKPPKYY------INRRIE--GKIKRINPEKNQLIISARELL 175 Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + + +I+ ++ G++ ++ + V +G G G+V +I+ ++ + Sbjct: 176 EQKQEEERSNLWEKIKNSQIVRGRIIKVDEDKLTVDLGLGIIGIVEKDEISWFPIKNIRR 235 Query: 665 YLQMGQEVPVKVLEVDRQGRIR-LSIKEATEQSQPAAAPEAPAAEQG 710 Y G V +VL +D R LSIK+A + P Sbjct: 236 YYNTGDIVKARVLSLDENSRTAQLSIKQAQPNPWSLFKEKYPEGSII 282 Score = 82.3 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 13/163 (7%) Query: 543 APRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDG 602 + + PR I D+ G + I D K+ + Sbjct: 381 EIKPGLEGLIPRKLISWERISNISDIFKPG--------DFIEAKIIEIDKENKKLTLSRR 432 Query: 603 EKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKV 662 + K E+I + G+ G++ + G V + G EG + +QI ++ ++ Sbjct: 433 DLLK---DPWEDIDEKYREGQNIKGRIIEKLKDGYIVELEPGIEGFLPYTQINFEKENEI 489 Query: 663 TDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEA 704 + +EV K+++++ + RI LSIK ++ + Sbjct: 490 QG-FKENEEVEAKIVKINPRFRRITLSIKALIKEKLDQEMKKY 531 >UniRef50_A7G2Q4 Ribosomal protein S1 n=13 Tax=Clostridium RepID=A7G2Q4_CLOBH Length = 387 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 11/197 (5%) Query: 516 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV 575 ++ A + + + +++ I F I +I+ +KD+ G + Sbjct: 101 WSKLEKAFKNEEILEIKVEEIIKGGAIGHIQGIRVF---IPASQIDNKYVKDLNVFKGEM 157 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF 635 ++ G IE++ + ++ K + +R EE+ +E G+ G V R+ F Sbjct: 158 VK------GRLIELDKQKRKIVLSSRVVKEEEEAKRKEELLNSLEKGQKIEGVVRRLEKF 211 Query: 636 GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATE 694 GAFV IG G +GLVH SQ++ RV ++ + +G +V V VL+ D+ +I LS+K+ + Sbjct: 212 GAFVDIG-GMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFDKDTKKIALSLKDVKK 270 Query: 695 QSQPAAAPEAPAAEQGE 711 + E Sbjct: 271 DPWNTVKDKYAVGSVIE 287 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%) Query: 550 EFAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATD 601 E +I + +K + GG + + I D V + D Sbjct: 196 EKGQKIEGVVRRLEKFGAFVDIGGMDGLVHNSQLSWGRVNHPSEVVSIGDKVEVYVLDFD 255 Query: 602 GEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQI 654 + K A + + VG V G + ++++FGAFV + G EGLVHIS+I Sbjct: 256 KDTKKIALSLKDVKKDPWNTVKDKYAVGSVIEGTIVKLLNFGAFVEVENGIEGLVHISEI 315 Query: 655 ADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAP 702 D+ + K ++ L +G +V VKVLEV+ + R+ LSIKEATE+ + + Sbjct: 316 TDEHIAKPSEKLNIGDKVKVKVLEVNSDEKRMSLSIKEATEKPKEDFSK 364 Score = 54.2 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 K + I I G + GKV + D A + IG +G++ ++ D + D Sbjct: 7 MKDMMEEINSSMKRIHKGELLKGKVISVSDKEAVLNIGYISDGILPKKEVVDNEEVNLKD 66 Query: 665 YLQMGQEVPVKVLEV-DRQGRIRLSIKEAT-EQSQPAAAPEAPAAEQGE 711 + + V VLEV D +G + LS K+A ++ E E Sbjct: 67 IISKDDVISVCVLEVNDGEGNVLLSKKKAEIIEAWSKLEKAFKNEEILE 115 >UniRef50_Q48082 30S ribosomal protein S1 n=129 Tax=Proteobacteria RepID=RS1_HAEIN Length = 549 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 33/283 (11%) Query: 436 GSSSMASVCGA--SLALMDAG------VPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDH 487 GS +V L+DAG +P+ + ++ GD V D Sbjct: 21 GSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFLNAQGELEIQVGDTVNVALD------- 73 Query: 488 LGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGD 547 G + L + + + ++ A + I G ++ Sbjct: 74 -------AVEDGFGETKLSREKAVRHESWIELEKAYEEKATVIGLIXGKVKGGFTVELNG 126 Query: 548 ISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH 607 + F P + ++GK E I+++ + + Sbjct: 127 VRAFLPGSLVDTRPAREADHLLGK---------ELEFKVIKLDQKRNNVVVSRRAVIESE 177 Query: 608 AIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQ 667 + E++ + G G V + ++GAFV +G G +GL+HI+ +A KRV+ ++ + Sbjct: 178 NSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVN 236 Query: 668 MGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 +G EV VKVL+ D+ R+ L +K+ + A A P + Sbjct: 237 VGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSK 279 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 92/262 (35%), Gaps = 14/262 (5%) Query: 463 GIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVA 522 +GL+ ++ G L +R+ L +++ + I + + Sbjct: 106 ATVIGLIXGKVKGGFTVELNGVRAFLPGSLVDTRPAREADHLLGKELEFKVIKLDQKRNN 165 Query: 523 LNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVIR 577 + ++ A + E+ + D+ G G + Sbjct: 166 VVVSRRAVIESENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVDGLLHITDMAW 225 Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 + + + D+ TVK+ D ++ + ++ I V TGKVT Sbjct: 226 KRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSKLTGKVT 285 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 + D+G FV I G EGLVH+S++ + + +G V V VLE+D + RI L Sbjct: 286 NLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVSLGDTVEVMVLEIDEERRRISLG 345 Query: 689 IKEATEQSQPAAAPEAPAAEQG 710 +K+ A ++ Sbjct: 346 LKQCKANPWTQFADTHNKGDKV 367 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 11/139 (7%) Query: 582 ETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVD 634 + + D V + D E+ + ++ + G TGK+ I D Sbjct: 317 HPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITD 376 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDY--LQMGQEVPVKVLEVDR-QGRIRLSIKE 691 FG F+ + GG +GLVH+S I+ + + G EV VL VD + RI L IK+ Sbjct: 377 FGIFIGLEGGIDGLVHLSDISWS-ISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQ 435 Query: 692 ATEQSQPAAAPEAPAAEQG 710 E Sbjct: 436 LEEDPFNNFVAINKKGAVV 454 Score = 61.9 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 29/197 (14%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG----- 573 ++V + + R I ++Q P ++ + + I D G Sbjct: 328 VEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIKSITDFGIFIGLEGGI 387 Query: 574 -------SVIRALT-EETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAE 618 + +++ EE + D+ + + A D K + + A Sbjct: 388 DGLVHLSDISWSISGEEAVRQYKKGDEVSAVVLAVDAVKERISLGIKQLEEDPFNNFVAI 447 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 + G V + V GA V + GG EG + R +T + +G V K Sbjct: 448 NKKGAVVSATVVEADAKGAKVELAGGVEGYI--------RSADLTSEVAVGDVVEAKYTG 499 Query: 679 VDRQGRI-RLSIKEATE 694 VDR+ RI LS+K + Sbjct: 500 VDRKSRIVHLSVKAKDQ 516 >UniRef50_UPI00016B22D3 RNA binding S1 domain protein n=2 Tax=candidate division TM7 RepID=UPI00016B22D3 Length = 358 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 101/234 (43%), Gaps = 14/234 (5%) Query: 482 LGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 GDE +D ++ +G+S L + ++ E + L + + + Sbjct: 65 EGDEVSASVVDTEL---ENGMSLLSLRKAVKDRGWEEVSARLESGEVIDIQPYDANRGGL 121 Query: 542 NAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE----DDGTVKI 597 + F P + ++ +++ L G T+++ D + K+ Sbjct: 122 LVEYEGVRGFLPVSQLSAEHYPRVGSSD--KDEILQRLNNLIGKTMKVRILDADRKSNKL 179 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 ++ E K + E ++ VG G VT +VDFG FV + G EGLVHIS+I+ + Sbjct: 180 IFSEKEAVKDGLA---ERFEKLAVGDQVEGVVTGVVDFGVFVNVE-GIEGLVHISEISWE 235 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 RV +DY++ GQ + K++ +D+ R+ LS+K+ T+ ++ E Sbjct: 236 RVNNPSDYVKTGQTIKAKIIAIDKD-RLSLSMKQLTQDPWLTEVQNFSKGDKVE 288 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 76/202 (37%), Gaps = 7/202 (3%) Query: 494 KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAP 553 ++ + + M ++I ++ ++ ++ + + + E+ + + Sbjct: 152 EILQRLNNLIGKTMKVRILDADRKSNKLIFSEKEAVKDGLAERFEKLAVGDQVEGVVTGV 211 Query: 554 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR--- 610 + +N + I+ ++ + ++ KI A D ++ +++ Sbjct: 212 VDFGVFVNVEGIEGLVHIS-EISWERVNNPSDYVKTGQTIKAKIIAIDKDRLSLSMKQLT 270 Query: 611 --RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 G G VTRI FGAFV + E LVHIS++ D + Sbjct: 271 QDPWLTEVQNFSKGDKVEGTVTRITPFGAFVQVSPAIEALVHISELGDSNNVDPEKVFTL 330 Query: 669 GQEVPVKVLEVDRQGR-IRLSI 689 + +L++D++ R I LS+ Sbjct: 331 NERKEFVILDIDKENRKISLSL 352 Score = 53.8 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 22/151 (14%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDF- 635 R ++E + + D + + R EE++A +E +G+V I + Sbjct: 61 RNISEGDEVSASVVDTELENGMSLLSLRKAVKDRGWEEVSARLE-----SGEVIDIQPYD 115 Query: 636 ----GAFVAIGGGKEGLVHISQIADKRVEKV-----TDYLQ-----MGQEVPVKVLEVDR 681 G V G G + +SQ++ + +V + LQ +G+ + V++L+ DR Sbjct: 116 ANRGGLLVE-YEGVRGFLPVSQLSAEHYPRVGSSDKDEILQRLNNLIGKTMKVRILDADR 174 Query: 682 Q-GRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 + ++ S KEA + + +Q E Sbjct: 175 KSNKLIFSEKEAVKDGLAERFEKLAVGDQVE 205 Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 8/101 (7%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 + ++ G V TGKV + + +G G V ++ R + G EV Sbjct: 16 DTSAKQLVAGEVVTGKVLSLKKHEVLIDLGAQGVGFVPRREVGFSRN------ISEGDEV 69 Query: 673 PVKVLEVDRQGRIR-LSI-KEATEQSQPAAAPEAPAAEQGE 711 V++ + + + LS+ K ++ + + E + Sbjct: 70 SASVVDTELENGMSLLSLRKAVKDRGWEEVSARLESGEVID 110 >UniRef50_A8YV34 30S ribosomal protein S1 n=29 Tax=Lactobacillus RepID=A8YV34_LACH4 Length = 403 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 8/158 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + I+ + D+ G ++ EI+ + I + + ++ Sbjct: 137 LPASLISNRYVSDLKPYIGKTMKL------KITEIDPNKNRLILSHKDLIEEEREEAFDK 190 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +++ VG V GKV+R+ +FGAF+ +G G +GLVHIS+I+ K V+K +D L+ GQ+V V Sbjct: 191 VASQLVVGDVIEGKVSRLTNFGAFIDVG-GVDGLVHISEISYKHVDKPSDVLKAGQDVKV 249 Query: 675 KVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KV+ +D + RI LSIK+ A + + E Sbjct: 250 KVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFE 287 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 8/124 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 ++ ++ D VK+ D ++ + ++ E+ TA++ G V+ G+V + Sbjct: 234 VDKPSDVLKAGQDVKVKVIGIDDDRHRISLSIKQTEPSPFEQATADLNEGDVFEGEVKSL 293 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKE 691 +FGAFV + G +GLVH+S+I++K V+K +D L++ Q V VKVL +D RI LSIK Sbjct: 294 TNFGAFVEVADGIQGLVHVSEISNKHVDKPSDVLKVDQTVKVKVLNIDPSDRRISLSIKA 353 Query: 692 ATEQ 695 A Sbjct: 354 ADSN 357 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 66/177 (37%), Gaps = 16/177 (9%) Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 + + R ++D++ G + G + + + Sbjct: 37 NVGVVNAGVEGVITRREYTSDRNADLRDLVKPGDKFKALVLRRAGG----DKENGEFFFS 92 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 K + A ++++ + E G G VT V G V + G G + S I+++ V Sbjct: 93 VTRLKEREAYDKLQK---DFEEGNAIEGTVTSSVRGGLLVDV--GTRGFLPASLISNRYV 147 Query: 660 EKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAP----AAEQGE 711 + Y +G+ + +K+ E+D + R+ LS K+ E+ + A + + E Sbjct: 148 SDLKPY--IGKTMKLKITEIDPNKNRLILSHKDLIEEEREEAFDKVASQLVVGDVIE 202 >UniRef50_UPI0001793368 PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA transport regulator 3 homolog) (Exosome component 6) n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793368 Length = 279 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 88/218 (40%), Gaps = 10/218 (4%) Query: 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM 369 L + R DGR+ R L ++TG++ + GSA G T+ + + +V +++ Sbjct: 36 LMKDVRCDGRDISAHRNLCIKTGIVTQAKGSAYLECGSTKLICSVF----DPKEVPNKVE 91 Query: 370 GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVS 429 +T + F +S + E +R + + + + + + Sbjct: 92 YAKTGELQCEFKFATFSCRQRRTYTRDSE-ERQLCNELRRALEPAICRGEFANFEIHINV 150 Query: 430 EITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLG 489 + E++GS A++ A LALMD +P+ + ++G+ K +L D DE+ L Sbjct: 151 LVLENDGSVLAAAITAAGLALMDGCIPMYDVIVATSLGIYKNK----ILVDPTYDEETLC 206 Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAK 527 +R + M ++ IT+ +++ Sbjct: 207 SSTIDNGENRGTVMLAYM-KNLQQITEFAQNGSMDVNM 243 Score = 69.2 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 19/183 (10%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFP---LTVNYQERTYAA 70 + ++TG++ QA + + T + +V K+ ++ L ++ T++ Sbjct: 51 RNLCIKTGIVT-QAKGSAYLECGSTKLICSVFDPKEVPNKVEYAKTGELQCEFKFATFSC 109 Query: 71 GRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEG-FVN-EVQVIATVVSVNPQVNPDI 128 + RR E + + R + P G F N E+ + V+ + V Sbjct: 110 RQ------RRTYTRDSEERQLCNELRRALEPAICRGEFANFEIHINVLVLENDGSVLAAA 163 Query: 129 VAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDE--LKESKLDLVVAGTEAAV 186 + G + IP I A +G ++ +++PT DE L S +D G Sbjct: 164 ITAAGLAL--MDGCIPMYDVIVATSLGIYKNKILVDPTYDEETLCSSTID---NGENRGT 218 Query: 187 LMV 189 +M+ Sbjct: 219 VML 221 >UniRef50_C0GUF0 RNA binding S1 domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUF0_9DELT Length = 476 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 47/127 (37%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 646 IE +D G V+I + + E IT E G V G VTR+ FGAFV I G E Sbjct: 254 IEEKDKGQVRIGLSMKQAQ---ADPWESITENFEPGSVVEGVVTRVAPFGAFVEISPGLE 310 Query: 647 GLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEA 704 GLVH+S+++ KRV K + +Q GQ+V VKV +D + RI LS+++A + Sbjct: 311 GLVHVSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMRDAQGDPWEGVSTRY 370 Query: 705 PAAEQGE 711 E Sbjct: 371 EKGTLVE 377 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 12/199 (6%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVI 576 + + A+ Q + + + + +++ ++D G + Sbjct: 100 QQLMQAMEQEIPVQGKVKETCKGGFRVQV--MGNHLAFCPMSQMDNRMVEDSQSLVGESM 157 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 L +G + + K K + E + + G V G VTR+ +G Sbjct: 158 TFLVSRVEA------NGRNIVVSRRALKDKEQAESLHEFSRNYKPGDVLQGTVTRVEPYG 211 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG----RIRLSIKEA 692 FV + G EGLVHIS+++ R + + +G V V +L ++ + RI LS+K+A Sbjct: 212 VFVEVAPGLEGLVHISEMSWSRSLAPEEIVSVGDTVSVHLLGIEEKDKGQVRIGLSMKQA 271 Query: 693 TEQSQPAAAPEAPAAEQGE 711 + E Sbjct: 272 QADPWESITENFEPGSVVE 290 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 22/196 (11%) Query: 513 GITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV---- 568 G T + + + + ++ I M+QA P I+E ++ ++ Sbjct: 244 GDTVSVHLLGIEEKDKGQVRIGLSMKQAQADPWESITENFEPGSVVEGVVTRVAPFGAFV 303 Query: 569 -IGKGGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------I 612 I G + ++E + ++ VK+ D + + ++ Sbjct: 304 EISPGLEGLVHVSEMSYLKRVSKPEEEVQPGQKVRVKVKGIDSLERRISLSMRDAQGDPW 363 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 E ++ E G + GK+ + DFG VA+ G GLV S + + +T+ + G V Sbjct: 364 EGVSTRYEKGTLVEGKMEKQEDFGMLVALEPGVVGLVPRSILHQNQDSSLTNK-KPGDRV 422 Query: 673 PVKVLEVDR-QGRIRL 687 V V VD RI L Sbjct: 423 NVAVESVDEANRRISL 438 Score = 43.0 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 14/170 (8%) Query: 554 RIHTIKINPDKIKDVIGKGGSVIRA--LTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR 611 +I +I + + G R L E +E D + + + + + A Sbjct: 34 KIISIGKDHVYVDTGTKTDGVADREDLLDSEGNLALEEGDSVELFVVSRHQGEIRLASSF 93 Query: 612 -----IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL 666 ++++ +E GKV G V + G +SQ+ ++ VE Sbjct: 94 GAHGGVQQLMQAMEQEIPVQGKVKETCKGGFRVQVMGNHLAFCPMSQMDNRMVEDSQSL- 152 Query: 667 QMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPE----APAAEQGE 711 +G+ + V V+ GR I +S + ++ Q + E + + Sbjct: 153 -VGESMTFLVSRVEANGRNIVVSRRALKDKEQAESLHEFSRNYKPGDVLQ 201 >UniRef50_D0J9D1 30S ribosomal protein S1 n=25 Tax=Bacteria RepID=D0J9D1_BLASP Length = 606 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 99/261 (37%), Gaps = 16/261 (6%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRD--GISALQMDIKIEGITKEIMQV 521 + +G V ++ +I E L V RD M++K+ I ++ + Sbjct: 147 VILGYVAARTKGGLIIEIFDIECFLPGSHINVKPVRDYDTYVGKTMEVKVVKINQKT-KN 205 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK----DVIGKGGSVIR 577 + K + + + + +I I + D + + Sbjct: 206 VVVSHKILIERDIEEQRKEMISKLDKGQVLEGKIKNILPYGAFVDLGGVDALLHITDMSW 265 Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 +++E + + D +K + + + ++VG GKV+ Sbjct: 266 PHINHPTEVVQLEQELKFVVLGVDKDKNRVQLGLKQLQPHPWNSLDNNLKVGNKVKGKVS 325 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 + D+GAFV I G E L+HIS+++ + D++Q+G E+ +L +D ++ ++ LS Sbjct: 326 VLADYGAFVEIIPGVEALLHISEMSWSYDLSSTQDFVQIGDEIEAVILTIDRQERKMSLS 385 Query: 689 IKEATEQSQPAAAPEAPAAEQ 709 +K+ T + P + Sbjct: 386 VKQLTPDPWIDIQNKYPIGSK 406 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 31/231 (13%) Query: 496 AGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPR- 554 G + + ++MD K + I L+ K + + +A + A R Sbjct: 105 VGEKMEVMVVKMDYKGQCI--------LSYQKAKIMRNWERINEAHEKGEVILGYVAART 156 Query: 555 --------------IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 + IN ++D G + ++I + + Sbjct: 157 KGGLIIEIFDIECFLPGSHINVKPVRDYDTYVGKTMEV------KVVKINQKTKNVVVSH 210 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE 660 + + +E+ ++++ G+V GK+ I+ +GAFV +G G + L+HI+ ++ + Sbjct: 211 KILIERDIEEQRKEMISKLDKGQVLEGKIKNILPYGAFVDLG-GVDALLHITDMSWPHIN 269 Query: 661 KVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 T+ +Q+ QE+ VL VD+ + R++L +K+ + + Sbjct: 270 HPTEVVQLEQELKFVVLGVDKDKNRVQLGLKQLQPHPWNSLDNNLKVGNKV 320 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 78/214 (36%), Gaps = 22/214 (10%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----K 571 + ++ + + + ++Q P + + +K + D Sbjct: 279 QELKFVVLGVDKDKNRVQLGLKQLQPHPWNSLDNNLKVGNKVKGKVSVLADYGAFVEIIP 338 Query: 572 GGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEIT 616 G + ++E T ++I D+ I D ++ K ++ +I Sbjct: 339 GVEALLHISEMSWSYDLSSTQDFVQIGDEIEAVILTIDRQERKMSLSVKQLTPDPWIDIQ 398 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK-RVEKVTDYLQMGQEVPVK 675 + +G + G V + +FG + + G G+++ + ++ +++ +++ + ++ V Sbjct: 399 NKYPIGSKHVGIVRKFTNFGISLELEKGISGIIYANDLSWGKKIKHPSEFCNINDKLEVI 458 Query: 676 VLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 +L +D Q R+ L K+ TE Sbjct: 459 ILALDPQTRRLNLGHKQITENPWEKYEKIYYVGS 492 Score = 60.0 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 599 ATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 + E+ K + E +I+ +Y G +T I + V IG EG + IS+ + Sbjct: 42 SEQQEERKKFEKIYAETLPKIQELEIYQGTITHITEKNLIVDIGFKAEGAIPISEFRENF 101 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGRIRLSI-KEATEQSQPAAAPEAPAAEQG 710 ++G+++ V V+++D +G+ LS K ++ E Sbjct: 102 N------FKVGEKMEVMVVKMDYKGQCILSYQKAKIMRNWERINEAHEKGEVI 148 >UniRef50_B0CSI5 Predicted protein n=3 Tax=Agaricales RepID=B0CSI5_LACBS Length = 255 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%) Query: 319 REKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLF 378 R IR + ++ G++ + GSA T+ + + Sbjct: 38 RASVDIRPIFLQPGLINQATGSAYIETQNTKIACAVFGP-----RQAKNVAFNEKGRLNV 92 Query: 379 HYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNG-- 436 F P+S + + + + + + + + I ES+G Sbjct: 93 DVKFAPFSC-DRRRAPMRDAEDRSIAMAIHQAISSSVRLDVLPKSVIDIFITIVESDGIE 151 Query: 437 SSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVA 496 A V AS AL DAG+ I VA + V G++ + + ++ G + Sbjct: 152 GCVAAGVIVASTALTDAGIEIFGLVASCSAAAV--GEDIWLDPSLRESQESRGTLVLSCM 209 Query: 497 GSRDGISALQMDIKI-EGITKEIMQVALNQAKGARLHILGVMEQAI 541 + +S++ + G M ++ I V+ +I Sbjct: 210 PALSTVSSIWQTGNMNTGDVLACMDACNSRCTDIHSVIAQVLLDSI 255 Score = 75.4 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 4 PIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK--PGQDFFPLTV 61 P + + L+ G++ QAT + + +T + V G ++AK + L V Sbjct: 34 PRRNRASVDIRPIFLQPGLI-NQATGSAYIETQNTKIACAVFGPRQAKNVAFNEKGRLNV 92 Query: 62 NYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVN 121 + + ++ R R+ I + I +R + + + T+V + Sbjct: 93 DVKFAPFSCDR--RRAPMRDAEDRSIAMAIHQAISSSVR--LDVLPKSVIDIFITIVESD 148 Query: 122 PQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAG 181 +I AS AL+ +GI G + + + + L+P+ E +ES+ LV++ Sbjct: 149 GIEGCVAAGVIVASTALTDAGIEIFGLVASCSAAAVGEDIWLDPSLRESQESRGTLVLSC 208 >UniRef50_Q0AXA2 Hydroxymethylbutenyl pyrophosphate reductase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXA2_SYNWW Length = 687 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 120/306 (39%), Gaps = 46/306 (15%) Query: 450 LMDAGVPIKAAV-----AGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGS------ 498 L++ G I+ V G + K+ D ++L ++ + V GS Sbjct: 379 LVEVGDEIEVMVLKWDDDGTILLSKKKVDAKILLDELEESFKEGKVITGTVTGSVKGGLL 438 Query: 499 -RDGISALQMDIKIEGITKEIMQVALNQA------------KGARLHILGVMEQAINAPR 545 GI A +E + + +N+ + +L E Sbjct: 439 VDVGIVAFLPASHVEDGYVKNLDEYINRELSFKIIEFNRNKRRGSQVVLSRKELVAEEKA 498 Query: 546 GDISEFAPRIHTIKINPDKIKDVIGKG--------------GSVIRALTEETGTTIEIED 591 +F I ++ +IK ++ G + ++ ++ + Sbjct: 499 KQKKQFWEEIEEGQVRKGRIKRLVDYGAFIDLGGYEGLLHVSEIAHTRIDQPSDVLQEGE 558 Query: 592 DGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 + V I A D EK + + E + + + G + G V RI FGAFV I G Sbjct: 559 EIDVYILALDREKERVSLSRKKLLKSPWEIVMEKFQEGDIIEGTVVRIAPFGAFVEIEAG 618 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPE 703 +GLVHISQ+A+ RVEK D +Q+ +++ +K+L +D + RI LS+KEA + + + Sbjct: 619 VDGLVHISQLANHRVEKPEDVVQVNEKIKIKILSIDPEEKRIGLSLKEALNEMENQEVQD 678 Query: 704 APAAEQ 709 ++ Sbjct: 679 YMEKQE 684 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Query: 592 DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 G+ + + A+ ++ ++ EIE G+V G++ R+VD+GAF+ +G G EGL+H+ Sbjct: 481 RGSQVVLSRKELVAEEKAKQKKQFWEEIEEGQVRKGRIKRLVDYGAFIDLG-GYEGLLHV 539 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQG 710 S+IA R+++ +D LQ G+E+ V +L +DR+ R+ LS K+ + + + Sbjct: 540 SEIAHTRIDQPSDVLQEGEEIDVYILALDREKERVSLSRKKLLKSPWEIVMEKFQEGDII 599 Query: 711 E 711 E Sbjct: 600 E 600 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 65/146 (44%), Gaps = 2/146 (1%) Query: 566 KDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVY 625 + ++ + + ++ET T EI++ + + + E + + T G V Sbjct: 281 EKMLDENQETNQETSQETQETQEIQEPEVKEEVSANEESFAKLEAEMADFT-TPNKGDVI 339 Query: 626 TGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRI 685 GKV +++D V +GG EG++ + +++ + ++ + +++G E+ V VL+ D G I Sbjct: 340 KGKVIQVLDDEVMVDVGGKSEGIIPLREMSLQDIDSAKELVEVGDEIEVMVLKWDDDGTI 399 Query: 686 RLSIKEATEQS-QPAAAPEAPAAEQG 710 LS K+ + + Sbjct: 400 LLSKKKVDAKILLDELEESFKEGKVI 425 >UniRef50_A9BGS2 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS2_PETMO Length = 532 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 13/234 (5%) Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVM 537 L D M ++ + I D E I++ + + + Sbjct: 134 LLSPKDDLPQGEKMAKVISKNGKNIVVSIKDYAEEKISQTFNEYEEGMVIDGVVEDIKNF 193 Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + ++ P IKD + G V + I+++ + Sbjct: 194 GAFV-RLNDHLNGLIPASEVSWDEKISIKDYLKVGQKVKALI-------IKLDREKKRIS 245 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 + + + + + +G + G VT+I+ FG V I G EGLVH ++I Sbjct: 246 LSLK----RLKENPWKTVDEKYPIGSIVQGTVTKILPFGFTVKIDEGLEGLVHETEIFWG 301 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 R +++D + +G +V VK+L +D++ +I LS K+ + + Sbjct: 302 RKGRISDLVNVGDDVQVKILNIDKENKKINLSYKQVSGDPWENIEEKYYEGNIV 355 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 589 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGL 648 I +G + + +A +I + E E G V G V I +FGAFV + GL Sbjct: 151 ISKNGKNIVVSIK----DYAEEKISQTFNEYEEGMVIDGVVEDIKNFGAFVRLNDHLNGL 206 Query: 649 VHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAA 707 + S+++ + DYL++GQ+V ++++D + RI LS+K E + P Sbjct: 207 IPASEVSWDEKISIKDYLKVGQKVKALIIKLDREKKRISLSLKRLKENPWKTVDEKYPIG 266 Query: 708 EQGE 711 + Sbjct: 267 SIVQ 270 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 16/157 (10%) Query: 562 PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEE 614 + + G+ G + + + DD VKI D E K + E Sbjct: 293 VHETEIFWGRKGRI--------SDLVNVGDDVQVKILNIDKENKKINLSYKQVSGDPWEN 344 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM-GQEVP 673 I + G + TG V +++D GA + I G G +H+S+++ V+ ++ L + Sbjct: 345 IEEKYYEGNIVTGTVEKVLDNGAIIKIDEGITGFLHVSELSWDFVDDISTVLNEKQKIKV 404 Query: 674 VKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + R+RLS++E E A+ E + Sbjct: 405 KIIKIDKDNKRMRLSVRETKENPWKKASKEIKPGDTV 441 Score = 52.6 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 44/228 (19%) Query: 495 VAGSRDGISALQMDIKI-EGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAP 553 V G+ I +KI EG+ + + + + R+ L + + +I + Sbjct: 269 VQGTVTKILPFGFTVKIDEGLEGLVHETEIFWGRKGRISDLVNVGDDVQVKILNIDKENK 328 Query: 554 RIHTIK-----INPDKIKDVIGKG----GSVIRALTEETGTTIEIEDDGTVKIAA----- 599 +I+ + I++ +G G+V + L I+ G + ++ Sbjct: 329 KINLSYKQVSGDPWENIEEKYYEGNIVTGTVEKVLDNGAIIKIDEGITGFLHVSELSWDF 388 Query: 600 ----------------------TDGEKAKHAIR-----RIEEITAEIEVGRVYTGKVTRI 632 D ++ + ++R ++ + EI+ G GK+ R Sbjct: 389 VDDISTVLNEKQKIKVKIIKIDKDNKRMRLSVRETKENPWKKASKEIKPGDTVKGKIIRF 448 Query: 633 VDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV 679 +D GA V I G E + S+ + + + + +G ++ KVLE+ Sbjct: 449 LDKGAIVLIDGYEVEAYLPASKASTN-SKSLEETYSIGDQIEAKVLEI 495 >UniRef50_Q9Z8M3 30S ribosomal protein S1 n=18 Tax=Chlamydiae/Verrucomicrobia group RepID=RS1_CHLPN Length = 580 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 77/185 (41%), Gaps = 10/185 (5%) Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 ++EQ + ++ D I ++ + + +E+ Sbjct: 209 KKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIR-HPSEMVELNQ 267 Query: 592 DGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 + V I + D EK + A+ E+I + G+ GK+ +++ +GAF+ I G Sbjct: 268 ELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEG 327 Query: 645 KEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAP 702 EGL+HIS+++ K + ++ + G EV VL + + +G+I L +K+ Sbjct: 328 IEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEE 387 Query: 703 EAPAA 707 + P Sbjct: 388 KYPIG 392 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 8/157 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + +I+ KIK++ G V ++I + + + I + E Sbjct: 159 LPGSQIDNKKIKNLDDYVGKVCEF------KILKINVERRNIVVSRRELLEAERISKKAE 212 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 + +I +G G V I DFG F+ + G +GL+HI+ + KR+ ++ +++ QE+ V Sbjct: 213 LIEQISIGEYRKGVVKNITDFGVFLDLD-GIDGLLHITDMTWKRIRHPSEMVELNQELEV 271 Query: 675 KVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 +L VD +GR+ L +K+ + P ++ Sbjct: 272 IILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGKRV 308 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 99/265 (37%), Gaps = 28/265 (10%) Query: 467 GLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQA 526 G+VK ++ V D+ G + L D R ++++ ++E I + Sbjct: 225 GVVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV------DK 278 Query: 527 KGARLHILGVMEQ-----AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSV------ 575 + R+ + ++ I +I + I+ G G + Sbjct: 279 EKGRVALGLKQKEHNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEIEEGIEGLIHISEMS 338 Query: 576 -IRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTG 627 ++ + + + D+ + + ++ K + + I + +G Sbjct: 339 WVKNIVD-PSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHVNA 397 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRI 685 ++ + ++GAFV + G EGL+HIS ++ K+V ++ + G V +L VD++ +I Sbjct: 398 EIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKI 457 Query: 686 RLSIKEATEQSQPAAAPEAPAAEQG 710 L +K+ + PA Sbjct: 458 TLGVKQLSSNPWNEIEAMFPAGTVI 482 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKVTRI 632 + + I + D E K + EI A G V +G VT+I Sbjct: 430 VSHPSELFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKI 489 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKE 691 FGAFV + G EGL+H+S+++DK K+ D + +G+ V KV+++D ++ LS+KE Sbjct: 490 TAFGAFVELQNGIEGLIHVSELSDKPFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKE 549 Query: 692 ATEQ 695 Sbjct: 550 YLAD 553 Score = 43.8 bits (102), Expect = 0.023, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Query: 613 EEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQE 671 EE EI+ G + G V I DF V +G EG++ +S+ D ++ L +G E Sbjct: 43 EESDNEIQPGAILKGTVVDINKDF-VVVDVGLKSEGVIPMSEFIDS-----SEGLVLGAE 96 Query: 672 VPVKVLEV-DRQGRIRLSI-KEATEQSQPAAAPEAPAAEQG 710 V V + + D +G++ LS K ++ Sbjct: 97 VEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIV 137 >UniRef50_P50889 40S ribosomal protein S1 n=37 Tax=Bacilli RepID=RS1_LEULA Length = 429 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 8/134 (5%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYT 626 + + + D VKI A D EK + ++ +E +I G V Sbjct: 261 EISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLE 320 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRI 685 G V R+ DFGAFV I G EGLVH+SQI++KR+E ++ L+ G +V VKVL++ + RI Sbjct: 321 GTVKRVKDFGAFVEILPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERI 380 Query: 686 RLSIKEATEQSQPA 699 LS+K E+ + Sbjct: 381 SLSMKALEEKPERE 394 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 11/241 (4%) Query: 472 GDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARL 531 D + L+D L D + + S A + K K ++ + Sbjct: 90 DDRNINLADELKIGDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGDTVDA 149 Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED 591 ++ + + + F P + + K IEI+ Sbjct: 150 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIK---------AQVIEIDP 200 Query: 592 DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHI 651 I + A+ ++ E+ +++ VG V G V R+ DFGAFV +G G +GLVH+ Sbjct: 201 ANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLG-GVDGLVHV 259 Query: 652 SQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 S+I+ RV+ D L G +V VK+L +D +GRI LSIK AA + A Sbjct: 260 SEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVL 319 Query: 711 E 711 E Sbjct: 320 E 320 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRI-VDFGAFVAIGGGKEGLVHISQIAD 656 E + +E +I+VG V TG++ I D A V + G+EG+V + +D Sbjct: 31 LDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSD 90 Query: 657 KRVEKVTDYLQMGQEVPVKVLE---VDRQGRIR--LSIKEAT-EQSQPAAAPEAPAAEQG 710 R + D L++G + V+ D++G + LS K ++ + + Sbjct: 91 DRNINLADELKIGDTIEAVVISNVTSDKEG-VAYLLSKKRLDARKAWENLS--FAEGDTV 147 Query: 711 E 711 + Sbjct: 148 D 148 >UniRef50_Q7X2Y7 Putative 30S ribosomal protein S1 (Fragment) n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X2Y7_9BACT Length = 318 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 9/142 (6%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVT 630 + + D V++ + D + + ++ + + +VG G+V Sbjct: 4 KRVKHPSKLVNPGDTVEVEVLSVDPKARRISLGMKQIQDNPWQTLHERYQVGTRVHGRVR 63 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLS 688 + DFGAF+ I G +GLVH+S I+ +R++ ++ L+ GQE+ + +D R+ LS Sbjct: 64 NLTDFGAFIEIEDGVDGLVHVSDISWSRRIKHPSEVLKKGQEIDAVITSIDAENRRLSLS 123 Query: 689 IKEATEQSQPAAAPEAPAAEQG 710 IK+ + E + Sbjct: 124 IKDLEPNAWDRFLTEHKPGDVV 145 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVT 630 + ++ + I + D E + ++ + E + G V GK+ Sbjct: 91 RRIKHPSEVLKKGQEIDAVITSIDAENRRLSLSIKDLEPNAWDRFLTEHKPGDVVRGKIA 150 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSI 689 R +FGAFV + EGL HIS+++D+RVEK D +Q+GQE+ K+L +D +I LS Sbjct: 151 RFANFGAFVELDDNLEGLCHISELSDERVEKPEDVVQLGQEMEFKILRIDVESKKIGLSA 210 Query: 690 KEATEQSQPAAAPE 703 + + +P + Sbjct: 211 RSVGKDDEPIVDTK 224 >UniRef50_B8FI70 Ribosomal protein S1 n=14 Tax=Proteobacteria RepID=B8FI70_DESAA Length = 616 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 17/223 (7%) Query: 506 QMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKI 565 M K+ + +R IL + + + + N + Sbjct: 195 SMVGKVFTFKVLKYNRKRSNIVLSRRVILEKEREEQRSSTLQNIHEGKVVEGVVKNITEY 254 Query: 566 KDVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IR 610 + GG + + + TVK+ D E+ + + Sbjct: 255 GVFVDLGGIDGLLHITDISWGRVKHPSELFGVGQTITVKVLDLDLERERVSLGMKQLKED 314 Query: 611 RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMG 669 + VG +GKV + D+GAFV + G EGL+H+S+++ R + + + +G Sbjct: 315 PWTTASDRYPVGERVSGKVVSLTDYGAFVELEEGIEGLIHVSEMSWTRKIRHPSKVVSVG 374 Query: 670 QEVPVKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQGE 711 ++ VL++ R+ L +K+ + P E Sbjct: 375 DDLEAVVLDIKPSNRRVSLGMKQVAPNPWDVIGEKYPIGTTIE 417 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 22/203 (10%) Query: 530 RLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----KGGSVIRALTE--- 581 R + M+Q P S+ P + + D +G + ++E Sbjct: 301 RERVSLGMKQLKEDPWTTASDRYPVGERVSGKVVSLTDYGAFVELEEGIEGLIHVSEMSW 360 Query: 582 -----ETGTTIEIEDDGTVKIAATDGEKAKH-------AIRRIEEITAEIEVGRVYTGKV 629 + + DD + + A + I + +G G++ Sbjct: 361 TRKIRHPSKVVSVGDDLEAVVLDIKPSNRRVSLGMKQVAPNPWDVIGEKYPIGTTIEGRI 420 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRL 687 I DFG F+ I G +GLVHIS I+ KR+ D + G EV VL +DR+ R L Sbjct: 421 KNITDFGMFIGIDEGIDGLVHISDISWTKRINHPGDVYKKGDEVRAIVLHIDRENERFSL 480 Query: 688 SIKEATEQSQPAAAPEAPAAEQG 710 IK+ + + Sbjct: 481 GIKQLEPDPWETISERYQVGTKV 503 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 21/212 (9%) Query: 519 MQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV-----IGKGG 573 ++ + K + + M+Q P I E P TI+ I D I +G Sbjct: 377 LEAVVLDIKPSNRRVSLGMKQVAPNPWDVIGEKYPIGTTIEGRIKNITDFGMFIGIDEGI 436 Query: 574 SVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAE 618 + +++ G + D+ + D E + E I+ Sbjct: 437 DGLVHISDISWTKRINHPGDVYKKGDEVRAIVLHIDRENERFSLGIKQLEPDPWETISER 496 Query: 619 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 678 +VG G +T + DFG FV + G EGLVH+S++A ++V+ +G V V+ Sbjct: 497 YQVGTKVNGLITSVTDFGIFVELEEGIEGLVHVSEVAKEKVKTPVGQFNVGDTVETVVVN 556 Query: 679 VD-RQGRIRLSIKEATEQSQPAAAPEAPAAEQ 709 ++ ++ RI LSIK E Q E A+ + Sbjct: 557 INPKERRIGLSIKRLEEDEQEGYFNEYMASNK 588 Score = 55.0 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 21/193 (10%) Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGK---GGSVIRALTEETG-TTIEIED 591 M + + I+I+ D + IG G IR E G EI D Sbjct: 57 FMALYEESFKRFEEGEVVTGKIIQIDKDYVLVDIGYKSEGLIPIREFIEPDGTVAAEIGD 116 Query: 592 DGTVKIAATDGEKAKHAIRR--------IEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 + V + D E + + EEI E + G +T V G V I Sbjct: 117 EVEVMVERLDSEDEGVMVSKEKASKIKVWEEIKVAYEEEGIVEGTITHRVKGGFSVDI-- 174 Query: 644 GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAA- 701 G + SQ+ + V + +G+ KVL+ +R+ I LS + E+ + Sbjct: 175 GVPAFLPGSQVDLRPVRDLDSM--VGKVFTFKVLKYNRKRSNIVLSRRVILEKEREEQRS 232 Query: 702 ---PEAPAAEQGE 711 + E Sbjct: 233 STLQNIHEGKVVE 245 >UniRef50_UPI0001C3232B RNA binding S1 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3232B Length = 529 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 8/158 (5%) Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + ++ ++ + G I IE+ + + + E Sbjct: 153 LPASLVDIRRVPHLDEYLGQTIECRV------IELNRSRNNVVLSRRAVLEEQRREDRER 206 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 674 I ++ G + G ++ IVDFGAFV + G +GL+HIS+++ V ++ L +G V V Sbjct: 207 ILDRLQPGMIVEGTISNIVDFGAFVDLD-GIDGLIHISELSWSHVNHPSEILSIGDTVSV 265 Query: 675 KVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQGE 711 KVL++DR RI L +K+ E ++ E Sbjct: 266 KVLDIDRDRQRISLGLKQTQEDPWQRVVDTYNVGDELE 303 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGKVTRI 632 + I D +VK+ D ++ + + + + VG G+VT++ Sbjct: 250 VNHPSEILSIGDTVSVKVLDIDRDRQRISLGLKQTQEDPWQRVVDTYNVGDELEGRVTKV 309 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 V FGAFV I G EGLVHIS++A VE + +Q EV VK+LE+D + R+ LSIK Sbjct: 310 VTFGAFVEILDGVEGLVHISELAQHHVENPREIIQPNDEVKVKILEIDSERRRLSLSIKR 369 Query: 692 ATEQSQPAAAPEAPAAEQG 710 Q P + E +G Sbjct: 370 VEGQILPVRSLEGEDGAEG 388 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672 + E G V TG V RI V IG EG++ ++++ ++ D ++MG+EV Sbjct: 32 DATLTPFEEGDVVTGHVVRIDKDEVLVDIGYKSEGVIPSNELSIRKSVDPKDEVEMGEEV 91 Query: 673 PVKVLEV-DRQGRIRLSIKEAT-EQSQPAAAPEAPAAE 708 VL D+ GR+ LS K A E++ A + E Sbjct: 92 DALVLTKEDQDGRLILSKKRARFEKAWRRIEAAAESGE 129 Score = 59.6 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 8/115 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 E + ED I + + + A RRIE E G G V +V G + Sbjct: 89 EEVDALVLTKEDQDGRLILSKKRARFEKAWRRIEAAA---ESGEPVDGTVIEVVKGGLII 145 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 + G G + S + +RV + +YL GQ + +V+E++R + + LS + Sbjct: 146 DL--GVRGFLPASLVDIRRVPHLDEYL--GQTIECRVIELNRSRNNVVLSRRAVL 196 >UniRef50_Q5HFU7 30S ribosomal protein S1 n=61 Tax=Staphylococcus RepID=RS1_STAAC Length = 391 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 12/198 (6%) Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 + +Q L+ + + V++ + G + I+ D I+D G Sbjct: 97 SYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRG----FVPASLISTDFIEDFSVFDGQ 152 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 IR EE ++ + I + + + + +++ + G V GKV R+ Sbjct: 153 TIRIKVEE------LDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQ 206 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEAT 693 FGAF+ IG G +GLVH+S+++ + V+ + + +GQ+V VK+ +DR RI LSIK+ Sbjct: 207 FGAFIDIG-GVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTL 265 Query: 694 EQSQPAAAPEAPAAEQGE 711 + + E Sbjct: 266 PTPFENIKGQFHENDVIE 283 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 16/222 (7%) Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 + + + D + I E + N+ +R + A Sbjct: 133 VPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLN 192 Query: 551 FAPRIHTIKINPDKIKDVIGKGG--------SVIRALTEETGTTIEIEDDGTVKIAATDG 602 I + I GG + + + I D VKI + D Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDR 252 Query: 603 EKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIA 655 + + ++ E I + V G V R+ +FGAFV I G +GLVHIS+IA Sbjct: 253 DTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIA 312 Query: 656 DKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQS 696 K + + L+ GQ+V VK+L +D + R+ LSIK Sbjct: 313 HKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNE 354 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVTDYLQ 667 E + +I+ G TG+V ++ D V I GGK G++ ISQ++ ++ ++ ++ Sbjct: 3 EEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVK 62 Query: 668 MGQEVPVKVLEV--DRQGRIR---LSIKEAT-EQSQPAAAPEAPAAEQGE 711 G EV V +V D + LS ++ E+S + E E Sbjct: 63 EGDEVEAYVTKVEFDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIE 112 >UniRef50_Q8KTS5 Ribosomal protein S1 n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTS5_TREPR Length = 518 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 75/195 (38%), Gaps = 22/195 (11%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVI 576 IM + + KG ++ M + I+ +KD G + Sbjct: 107 TIMGTVVGRVKGGMTAVVNGMRAFLP--------------GSLIDTRPVKDAERYEGRRL 152 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFG 636 R I+++ + + + + A + G V G + I D+G Sbjct: 153 RFHV------IKLDRKRGNVVLSRRSVIERRQAENRNRLLASLGDGDVVQGVIKNITDYG 206 Query: 637 AFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRLSIKEATEQ 695 AF+ +G G +GL+HI+ I+ +R+ + L +G + VKVL+ DR R+ L +K+ Sbjct: 207 AFIDLG-GLDGLLHITDISWRRIRHPSQVLSVGDRITVKVLKFDRTKTRVSLGLKQLHPD 265 Query: 696 SQPAAAPEAPAAEQG 710 PA + Sbjct: 266 PWAGIIGRYPAGSRV 280 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYT 626 + + + D TVK+ D K + ++ I G Sbjct: 222 DISWRRIRHPSQVLSVGDRITVKVLKFDRTKTRVSLGLKQLHPDPWAGIIGRYPAGSRVR 281 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVT-DYLQMGQEVPVKVLEVDR-QGR 684 G+VT I D+G FV I G EGL+H+S++ K ++ + ++GQ V V VL+V + + R Sbjct: 282 GRVTNIADYGLFVEIERGIEGLLHVSEMHQKSKGTISLRHFRVGQYVNVTVLDVSKTRRR 341 Query: 685 IRLSIKEATEQSQPAAAPEAPAAEQ 709 I L +K T ++ Sbjct: 342 ISLGMKHGTLNPWLTFYKGFRKNDR 366 >UniRef50_D1B5G8 RNA binding S1 domain protein n=3 Tax=Synergistaceae RepID=D1B5G8_THEAS Length = 504 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 5/192 (2%) Query: 520 QVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL 579 +L + A +H ++E +++ ++ ++ G + Sbjct: 197 MASLREEFYANVHEGDILEGEVSSITSFGVFVNLGAMEGLVHITELSWQRGAKAKDLVQK 256 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++ + D +++ + + + +T+ VG+ G VT + DFGAFV Sbjct: 257 GDKVKVKVIGIDRENNRVSLSLKQAQE---DPWVGVTSRWTVGQRTKGVVTNLADFGAFV 313 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 I G EGL+HI ++ RV+ + L+ GQEV V +LEVD + RI L +K+ Sbjct: 314 EIEPGVEGLIHIGDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQLN-DPWA 372 Query: 699 AAAPEAPAAEQG 710 + + + Sbjct: 373 NVSEKYSKDQVV 384 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 3/142 (2%) Query: 570 GKGGSVIRALTEETGTT-IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGK 628 G+G + + + +E + + + + EE A + G + G+ Sbjct: 158 GRGINPANLVGKTFPVKLVEKDRRKRRLVLSRRSILDEEMASLREEFYANVHEGDILEGE 217 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRL 687 V+ I FG FV +G EGLVHI++++ +R K D +Q G +V VKV+ +D R+ L Sbjct: 218 VSSITSFGVFVNLGA-MEGLVHITELSWQRGAKAKDLVQKGDKVKVKVIGIDRENNRVSL 276 Query: 688 SIKEATEQSQPAAAPEAPAAEQ 709 S+K+A E ++ Sbjct: 277 SLKQAQEDPWVGVTSRWTVGQR 298 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 7/129 (5%) Query: 573 GSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI------RRIEEITAEIEVGRVYT 626 G + + + ++ + V I DG++ + + ++ + +V T Sbjct: 326 GDLSWSRVKHPKEVLKKGQEVEVVILEVDGDRRRIGLGLKQLNDPWANVSEKYSKDQVVT 385 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRI 685 KV R+ DFGAFV I G EGL+HISQ++ +RVEK +D L+ GQEV K+LEV+ + RI Sbjct: 386 VKVVRLADFGAFVEIEDGVEGLIHISQLSRQRVEKPSDVLREGQEVQAKILEVNPSEKRI 445 Query: 686 RLSIKEATE 694 RLS++ E Sbjct: 446 RLSLRALEE 454 Score = 55.3 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 ++ + E + + +I+ + I G V G V + G V +G EG + + + Sbjct: 12 VSEPEPETMESIMEQIDSV--NIHRGSVVEGTVVDAREDGWLVDVGYKCEGFLPRREWSH 69 Query: 657 KR-VEKVTDYLQMGQEVPVKVLEV--DRQGRIRLSI-KEATEQSQPAAAPEAPAAEQGE 711 + VEKV + Q+G + V+V V + ++ LS + ++ A + ++ E Sbjct: 70 RAIVEKVGEP-QVGDRIRVQVTNVGQGEEAQLNLSRWRCEFDERWNALEEKLAQSDVIE 127 Score = 50.3 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 19/150 (12%) Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAK---------HAIRRIEEITAEIEVGRVYTG 627 RA+ E+ G ++ D V++ + R + ++ V Sbjct: 70 RAIVEKVGEP-QVGDRIRVQVTNVGQGEEAQLNLSRWRCEFDERWNALEEKLAQSDVIEV 128 Query: 628 KVTRIVDFGAFVAIGGGKEGLVHISQIA-DKRVEKVTDYLQMGQEVPVKVLEVDRQG-RI 685 + R V G V G EG + IS +A + R + +G+ PVK++E DR+ R+ Sbjct: 129 EGIRKVKGGLIVDC-CGLEGFIPISHLAEEGRGINPANL--VGKTFPVKLVEKDRRKRRL 185 Query: 686 RLSIKEATEQSQPAAAPEA----PAAEQGE 711 LS + ++ + E + E Sbjct: 186 VLSRRSILDEEMASLREEFYANVHEGDILE 215 >UniRef50_D1BMA5 Hydroxymethylbutenyl pyrophosphate reductase n=3 Tax=Veillonella RepID=D1BMA5_VEIPT Length = 632 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 520 QVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL 579 Q + + + ++ + I + + +K + G Sbjct: 369 QYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRGFIPLSQGDVHFVKSLDNLVG------ 422 Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFV 639 TE +EI++ + + ++ E I VG Y G V +I+ +GAFV Sbjct: 423 TEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNINVGENYKGIVRKIMPYGAFV 482 Query: 640 AIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQP 698 IG G EGL+HIS I+ ++++KV D L +GQE+ VK+ D ++ LS+K ++ Sbjct: 483 DIG-GIEGLLHISDISWQKIKKVEDVLSVGQEIEVKLQSFDAESNKLSLSLKALSKSPWD 541 Query: 699 AAAPEAPAAEQG 710 A + Sbjct: 542 VAEETLHVGDVI 553 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 22/256 (8%) Query: 461 VAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQ 520 + I GLV + + + H + G+ L++D K + Sbjct: 386 IDAIPAGLVVTVKSLRGFIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEK---------K 436 Query: 521 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SV 575 L ++ A L + + A ++ E I + D+ G G + Sbjct: 437 NRLVLSRRAVLEVERQAKLAEALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDI 496 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEITAEIEVGRVYTGK 628 ++ + + + VK+ + D E K + + + VG V GK Sbjct: 497 SWQKIKKVEDVLSVGQEIEVKLQSFDAESNKLSLSLKALSKSPWDVAEETLHVGDVINGK 556 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRL 687 V R+V +GAFVA+ +GL+HISQI +R KV DYL GQEV VK++ +++ + ++ L Sbjct: 557 VVRLVAYGAFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEVKIISLNKDEKKLGL 616 Query: 688 SIKEATEQSQPAAAPE 703 ++ E E + A E Sbjct: 617 ALTELMESKETAEDAE 632 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 E + G V G V ++ D A+V+ G E +++ ++I+ E D L+ G E+ + Sbjct: 286 EEFKKGNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEIKAVI 345 Query: 677 LE-VDRQGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 + + I LS+ + EA ++ Sbjct: 346 MNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEA 380 >UniRef50_C0DB62 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DB62_9CLOT Length = 259 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 480 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 539 + ED+ +++ + D L + + I ++ Sbjct: 23 PVETMEDYAAELEASYKTLNKRNIEISEDESGVLEKWAHFTQMLEERTVFSVKIAEAVKA 82 Query: 540 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 599 + A D+ F P +K++D GK VI +T +T + ++ Sbjct: 83 GVVAYVDDVRAFIPASQLSTEYVEKLEDWQGKNIDVI-VITADTEKK-------RLVLSG 134 Query: 600 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 659 + EK + R E++ A+ + G V G V + ++GAF+ + G +GL+H+SQI+ +R+ Sbjct: 135 REVEKERKEAERKEKL-AQFKAGDVVEGTVDSLKNYGAFIKLADGVDGLLHVSQISTQRI 193 Query: 660 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPE 703 + L+ GQ V VK+L V G+I LS+K T + E Sbjct: 194 KHPGVVLKEGQSVKVKILSV-ADGKISLSMKALTAPVEDEEQHE 236 >UniRef50_Q4DZV2 Ribosomal RNA processing protein 41A, putative n=8 Tax=Trypanosomatidae RepID=Q4DZV2_TRYCR Length = 252 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 6/225 (2%) Query: 306 RSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVL 365 + + R+DGR R + + G + G G + G L Sbjct: 5 KEYINPAGLRLDGRRPQESRRMTLEFGKVLGCDGCCTVMSGLATVCASVY-GPREVTNRL 63 Query: 366 DELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTV 425 + E ++ + + +V+ + Sbjct: 64 ESKYNEC--IITCEVAIAAFAGEKRRAPQRRSKLSEEMSAAVLEVARSVVLLSQYPNSQI 121 Query: 426 RVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE 485 + E+ +GS A + A LAL+DA V ++ V +GL+ D VV Sbjct: 122 HICVEVLRQDGSDKAACINAACLALVDACVAMRDIVYAQTVGLIHAVD--VVDLTTEEMR 179 Query: 486 DHLGDMDFKVAG-SRDGISALQMDIKIEGITKEIMQVALNQAKGA 529 + V G I ++ + ++ + ++ Sbjct: 180 SQCPTICIAVKGHDPSSIVWMESNCRVTSEVVSRLVTVAQKSSEG 224 Score = 59.2 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 78/214 (36%), Gaps = 14/214 (6%) Query: 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERT 67 +TLE G + V V +V G ++ + +T Sbjct: 22 ESRRMTLEFGKV-LGCDGCCTVMSGLATVCASVYGPREVTNRLESKYNECIITCEVAIAA 80 Query: 68 YAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPD 127 +A + +R + SE + + R + L + +++ + V+ + Sbjct: 81 FAGEK--RRAPQRRSKLSEEMSAAVLEVARSV-VLLSQYPNSQIHICVEVLRQDGSDKA- 136 Query: 128 IVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKES--KLDLVVAGTE-A 184 + A AL + + + A VG I+ V++ T +E++ + + V G + + Sbjct: 137 -ACINAACLALVDACVAMRDIVYAQTVGLIHAVDVVDLTTEEMRSQCPTICIAVKGHDPS 195 Query: 185 AVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQN 218 +++ +ES + ++ + + V + + V Sbjct: 196 SIVWMESNCR-VTSEVVSRLVTVAQKSSEGVFAA 228 >UniRef50_A7AQY6 Exosome complex exonuclease rrp41, putative n=1 Tax=Babesia bovis RepID=A7AQY6_BABBO Length = 259 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 21/263 (7%) Query: 307 SRVLAGEPRIDGREKDMIRGLDVRTGV-----LPRTHGSALFTRGETQALVTATLGTARD 361 + RIDGR +R +D+ G + G A T+G T+ A + D Sbjct: 5 EYISLEGLRIDGRRPSEVRHIDILCGPECGVDIINYDGVAQVTQGLTKV--QAFINGPTD 62 Query: 362 AQVLDELMGERTD----TFLFHYNFPPYSVGETGMVGSPKRR-EIGHGRLAKRGVLAVMP 416 G T P E +G + R V+ Sbjct: 63 IGRSKTKEGFETADSPVEIRCEVCIPS----ERKSMGHRNNDATVEISRAVVGTFEPVII 118 Query: 417 DMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYV 476 T+ + + E++G + +AL+DAG+ +K + ++ E Sbjct: 119 SHLYKNSTIHIFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNE----T 174 Query: 477 VLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGV 536 +L D E + M+ +A S + +D++ + + + +A + Sbjct: 175 LLIDPNQLEINASIMELTLALSVSNEELIHIDLRSK-YPIKSYAEIIEKAIKGSERFAAL 233 Query: 537 MEQAINAPRGDISEFAPRIHTIK 559 + + + E +H K Sbjct: 234 AKAKLKGYAREHLEINNAVHGSK 256 Score = 65.7 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 16/224 (7%) Query: 19 ETGMMARQATAAVMVSMDDTAVFV-----TVVGQKKAKPGQDFFPLTVNYQERTYAAGRI 73 E G+ V+ T V T +G+ K K G + V + I Sbjct: 32 ECGVDIINYDGVAQVTQGLTKVQAFINGPTDIGRSKTKEGFETADSPVEIRCEVC----I 87 Query: 74 PGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFV--NEVQVIATVVSVNPQVNPDIVAM 131 P R ++ I+R + P+ + + + V+ + V + + Sbjct: 88 PSERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKNSTIHIFVNVLEADGGVKATV--I 145 Query: 132 IGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA--GTEAAVLMV 189 AL +GI I A +N+ +++P Q E+ S ++L +A + ++ + Sbjct: 146 NAVLIALIDAGIAMKDIIVACTAVMLNETLLIDPNQLEINASIMELTLALSVSNEELIHI 205 Query: 190 ESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDW 233 + ++ + + + +K + + Sbjct: 206 DLRSK-YPIKSYAEIIEKAIKGSERFAALAKAKLKGYAREHLEI 248 >UniRef50_Q5M0R3 30S ribosomal protein S1 n=88 Tax=Bacilli RepID=Q5M0R3_STRT1 Length = 417 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 491 MDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISE 550 +D + + + + D KI+ + + L++ + + ++ + Sbjct: 155 IDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEVGSVV 214 Query: 551 FAPRIHTIKINPDKIKDVIGKGG-----SVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 D+ G G + + + + D+ VK+ A D E Sbjct: 215 TGKVARLTSF--GAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAG 272 Query: 606 KHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 + ++ + + ++ G V GKV R+ DFG FV + G +GLVHISQI+ KR Sbjct: 273 RVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGGFVEVLPGIDGLVHISQISHKR 332 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAE 708 VE D L +GQ+V VKVLEV+ R+ LSIK E+ A + Sbjct: 333 VENPKDVLSVGQDVTVKVLEVNADAERVSLSIKALEERPANAEGENNEKRQ 383 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 3/139 (2%) Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAK-HAIRRIEEITAEIEVGRVYTGKVTRIV 633 + + +E I+ D + + E + AI +E+ +++EVG V TGKV R+ Sbjct: 163 TEQFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLT 222 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRLSIKEA 692 FGAF+ +G G +GLVH+++++ +R + +G E+ VKVL +D + GR+ LS+K Sbjct: 223 SFGAFIDLG-GVDGLVHVTELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKAT 281 Query: 693 TEQSQPAAAPEAPAAEQGE 711 T + A + E Sbjct: 282 TPGPWDGVEQKLAAGDVIE 300 >UniRef50_B5YH71 30S ribosomal protein S1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH71_THEYD Length = 534 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 16/198 (8%) Query: 529 ARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SVIRALT 580 +R L ++ + + + +I N + GG + Sbjct: 182 SRKAYLQEEKEKMKKEISEKIKEGLKIKGTVKNITNYGVFVDLGGLDGFLHISDISWGKV 241 Query: 581 EETGTTIEIEDDGTVKIAATDGEKAK-------HAIRRIEEITAEIEVGRVYTGKVTRIV 633 EI + + D E + E I + G GKVTR+ Sbjct: 242 RHPSQFFEIGSEYEFIVLKADTENERITLGYKQKKADPWENIDKKYHPGMKVRGKVTRVE 301 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEA 692 DFG FV + G EGLVH+S++ + T Y ++ + + VKVL++DR+ R I LS K+ Sbjct: 302 DFGLFVELEEGVEGLVHVSELDWIAPKHPTYYAEVDEWINVKVLDIDRENRKISLSFKQL 361 Query: 693 TEQSQPAAAPEAPAAEQG 710 + A + ++ Sbjct: 362 KPKPWEVVAKKYKVGDRI 379 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 17/223 (7%) Query: 496 AGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRI 555 GS L+ D + E IT Q + + M+ R + + Sbjct: 250 IGSEYEFIVLKADTENERITLGYKQKKADPWENIDKKYHPGMKVRGKVTRVEDFGLFVEL 309 Query: 556 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR----- 610 + ++ + E+++ VK+ D E K ++ Sbjct: 310 EEGVEGLVHVSELD-------WIAPKHPTYYAEVDEWINVKVLDIDRENRKISLSFKQLK 362 Query: 611 --RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQ 667 E + + +VG +GKV I DFG FV + G +GL+HIS I+ K ++ + + Sbjct: 363 PKPWEVVAKKYKVGDRISGKVKTITDFGIFVRLPEGVDGLIHISDISWTKHIDHPSQIFK 422 Query: 668 MGQEVPVKVLEVDRQG-RIRLSIKEATEQSQ-PAAAPEAPAAE 708 GQ+V +L ++ + ++ L IK+ +E + E Sbjct: 423 KGQKVDAVILSLEPEKEKLSLGIKQLSEDPWIKEIPEKFKIGE 465 Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 29/202 (14%) Query: 518 IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDV-------IG 570 I L+ + R L +Q P +++ I I D G Sbjct: 340 INVKVLDIDRENRKISLSF-KQLKPKPWEVVAKKYKVGDRISGKVKTITDFGIFVRLPEG 398 Query: 571 KGGSV-IRAL-----TEETGTTIEIEDDGTVKIAATDGEKAKHAIRR--------IEEIT 616 G + I + + + I + + EK K ++ I+EI Sbjct: 399 VDGLIHISDISWTKHIDHPSQIFKKGQKVDAVILSLEPEKEKLSLGIKQLSEDPWIKEIP 458 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 676 + ++G +Y KV + + G FV I G EGLV+ S+I R ++ G E+ V V Sbjct: 459 EKFKIGEIYNAKVIKKTEHGLFVDIEGIVEGLVYNSEIDKNRT------VKEGDEIKVIV 512 Query: 677 LEVDRQGR-IRLSIKEATEQSQ 697 ++VD++ R I LS+K+ E + Sbjct: 513 VKVDKEKRKIGLSMKKIDENEE 534 Score = 56.5 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 605 AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTD 664 + E + IE G + GK+ + + G V +G EG++ +++ +++ ++ + + Sbjct: 8 KQELESLYEGSLSHIERGEIIKGKIMGVRNDGVIVDVGYKFEGIIPLNEFSEEELKNIKE 67 Query: 665 YLQMGQEVPVKVLEVDR-QGRIRLSI-KEATEQSQPAAAPEAPAAEQGE 711 E+ V + ++D QG I LS + + A E Sbjct: 68 A----DEIEVFIEKIDDAQGIISLSRDRALKIKGWEILMDAYEKALPVE 112 >UniRef50_B0VFT2 Putative Ribosomal protein S1 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFT2_9BACT Length = 503 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 11/197 (5%) Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG 573 + K+ + A + + I + N F P + IGK Sbjct: 108 VDKQSILEAFEKKIPVQGKIYTPTKGGFNVDILGARAFCPVSQVSLHPVEDSSQFIGKTL 167 Query: 574 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIV 633 + IE ++ + + + R E A+++VG + GKV R+ Sbjct: 168 DFL---------VIECSENCRRIVVSHRQLEEMREQERKETALAKLKVGDIVKGKVLRMT 218 Query: 634 DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEAT 693 FGAF+ +G G EGL+H+S+I+ + + + D L+ GQE+ VK+L++ + +I LS K Sbjct: 219 TFGAFIDLG-GIEGLMHVSEISWQHIVRPQDELKKGQEIEVKILDI-KGEKIALSRKVLL 276 Query: 694 EQSQPAAAPEAPAAEQG 710 E A E + Sbjct: 277 EDPFEVAMKELHEGDII 293 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 21/212 (9%) Query: 502 ISALQMDIKIEGITKEIMQVALNQAKG----ARLHILGVMEQAINAPRGDISEFAPRIHT 557 + + + ++ ++ Q + A+L + +++ + + Sbjct: 171 VIECSENCRRIVVSHRQLEEMREQERKETALAKLKVGDIVKGKVLRMTTFGAFIDLGGIE 230 Query: 558 IKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-----RI 612 ++ +I ++R ++ + VKI GEK + + Sbjct: 231 GLMHVSEISW-----QHIVR-----PQDELKKGQEIEVKILDIKGEKIALSRKVLLEDPF 280 Query: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR-VEKVTDYLQMGQE 671 E E+ G + +V R+ +FGAF + G EGL+ IS+++ R + D ++ G Sbjct: 281 EVAMKELHEGDIINCRVLRLHNFGAFAELKPGVEGLIPISEMSRNRNISHPRDIVKEGDW 340 Query: 672 VPVKVLEVDRQ-GRIRLSIKEATEQSQPAAAP 702 V V++L +D +I LS+K Sbjct: 341 VQVQILRIDEDTHKISLSLKALEADPWDKIDE 372 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 14/116 (12%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 ++ D V+I D + K ++ ++I I++ + G V Sbjct: 328 ISHPRDIVKEGDWVQVQILRIDEDTHKISLSLKALEADPWDKIDEIIQLETPFEGIVESS 387 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQG-RIRL 687 +FG FV I G GL+ S RV K D Q G+ V + V +D++ RI L Sbjct: 388 TNFGVFVTISEGITGLLPKS-----RVRK-NDTFQTGEPVTLMVTAIDKENHRITL 437 >UniRef50_D1PP74 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=8 Tax=Bacteria RepID=D1PP74_9FIRM Length = 639 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 13/222 (5%) Query: 490 DMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDIS 549 ++D V + D + ++ ++ M+ A+ + VME ++ Sbjct: 352 ELDLVVVKTNDQEGVDTL-SRVRFEAQKGMKDVAEAAENGTVMEGDVMEANKGGVVVNVK 410 Query: 550 EFAPRIHTIKINPDKIKDVIGKGGSVIR-ALTEETGTTIEIEDDGTVKIAATDGEKAKHA 608 + + + +D G ++ +TE G I + + + A+ Sbjct: 411 GVRVFVPRSQATMRRDEDYTKLVGQHVKLVITECAGRKI---------VGSINKVTAEAN 461 Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQM 668 + EE A +EVG+ Y G V + +GAFV IG G +GL HIS+++ ++ ++ + + Sbjct: 462 KAKREEFWANVEVGKKYQGVVKSLTSYGAFVDIG-GVDGLCHISELSWSNIKHPSEVVNV 520 Query: 669 GQEVPVKVLEVDRQG-RIRLSIKEATEQSQPAAAPEAPAAEQ 709 G E+ V V D + ++ L K+ + E P + Sbjct: 521 GDEIEVYVKSYDPENQKVSLGYKKEEDNPWVKLENEVPVGTE 562 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 8/128 (6%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKVTRI 632 + + + D+ V + + D E K ++ ++ E+ VG +T V I Sbjct: 511 IKHPSEVVNVGDEIEVYVKSYDPENQKVSLGYKKEEDNPWVKLENEVPVGTEFTAPVVSI 570 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKE 691 FGAFV I G +GLVHIS+I+++RV KV+D L++G EV VK+ VD + RI LS+K Sbjct: 571 TKFGAFVRIMPGIDGLVHISEISNERVNKVSDVLKVGDEVRVKLTNVDFDRKRISLSMKA 630 Query: 692 ATEQSQPA 699 + + A Sbjct: 631 CLNEDESA 638 Score = 44.5 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 4/152 (2%) Query: 563 DKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVG 622 D++ G + +T T I ++ ++ + + G Sbjct: 244 DELDPAWLAGAETV-GVTAGASTPSSIIEEVLNSMSEEIRDDMSFEEMLAASEAKPLYAG 302 Query: 623 RVYTGKVTRIVDFGAFVAIGGGK-EGLVHISQIADKRVEKVTDYLQMGQEVP-VKVLEVD 680 ++ KV + V I G K G+V + +++ K+ D +++ E+ V V D Sbjct: 303 KIVKAKVISVSPTECVVGIDGSKHTGVVTLREMSHDPNAKMEDLVKVDDELDLVVVKTND 362 Query: 681 RQGRIRLSI-KEATEQSQPAAAPEAPAAEQGE 711 ++G LS + ++ A A E Sbjct: 363 QEGVDTLSRVRFEAQKGMKDVAEAAENGTVME 394 >UniRef50_B8DPH9 RNA binding S1 domain protein n=4 Tax=Desulfovibrio vulgaris RepID=B8DPH9_DESVM Length = 564 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 100/274 (36%), Gaps = 32/274 (11%) Query: 457 IKAAVAGIA--MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI 514 +KA V I V G L D ED G++ V + + Sbjct: 71 VKATVVAIGEDTVFVATGAKVDGLVDRKELEDAEGNLPVAVGDVLELYV----------V 120 Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 + ++ L++A G ++ + + + + P + K + Sbjct: 121 SANANEIKLSRAMGGQVGLAQMEDALNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQM 180 Query: 575 VIRALTEETG--------TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYT 626 +R E +E +G + + + + + ++ G V Sbjct: 181 DLRPGAEPDSFTGQTFQFLITRLEQNGRNIVVSRRMLLEREQAESLSALMENVKEGDVLE 240 Query: 627 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV------- 679 G V R+ FGAFV I G EG+VH+S+++ RV++ + + +G +V VKVL + Sbjct: 241 GTVARLAPFGAFVEIAPGLEGMVHVSELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEGK 300 Query: 680 ---DRQG--RIRLSIKEATEQSQPAAAPEAPAAE 708 D + RI LSI++ + A A + Sbjct: 301 GGKDSRKGPRISLSIRQVSGDPWQDVADRLDADQ 334 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 18/278 (6%) Query: 451 MDAGVPIKAAVAG-IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG--ISALQM 507 ++AG+PI+ V G G E + G G I+ L+ Sbjct: 146 LNAGIPIEGKVTGPCKGGFNVEVLKRRAFCPASQMDLRPGAEPDSFTGQTFQFLITRLEQ 205 Query: 508 DIKIEGITKEIM---------QVALNQAKGARLHILGVME----QAINAPRGDISEFAPR 554 + + +++ ++ + K + V A + Sbjct: 206 NGRNIVVSRRMLLEREQAESLSALMENVKEGDVLEGTVARLAPFGAFVEIAPGLEGMVHV 265 Query: 555 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEE 614 + + + G V + G + K + + ++ Sbjct: 266 SELSWSRVQQADEAVSVGDKVRVKVLGIAGAEEGKGGKDSRKGPRISLSIRQVSGDPWQD 325 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVP 673 + ++ ++ TGKVTR+ FGAF+ + G EGLVH+S+++ +R+ K + + G+ V Sbjct: 326 VADRLDADQILTGKVTRLAPFGAFIEVLPGVEGLVHLSEMSWTRRINKPEEAVTPGETVS 385 Query: 674 VKVLEVDR-QGRIRLSIKEATEQSQPAAAPEAPAAEQG 710 V++ E+D + R+ LS+++A PA Sbjct: 386 VRIKELDPARKRLSLSLRDAEGDPWSTVEERFPAGSTV 423 Score = 64.2 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 11/143 (7%) Query: 578 ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVT 630 + + + +V+I D + + ++ + G TG V Sbjct: 369 RRINKPEEAVTPGETVSVRIKELDPARKRLSLSLRDAEGDPWSTVEERFPAGSTVTGTVE 428 Query: 631 RIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSI 689 + FG FV + G GL+ + A K L G EV + V ++D + RI L+ Sbjct: 429 KRAPFGLFVNLAPGVTGLLPNAVAATSPQSKTYAGLNPGAEVSLVVRDLDVKARRISLAP 488 Query: 690 KEA---TEQSQPAAAPEAPAAEQ 709 +A + A + Sbjct: 489 ADATGEDDDEWRKLAQPQKREPR 511 >UniRef50_C1E4G7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4G7_9CHLO Length = 232 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 7/228 (3%) Query: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374 R DGR + +R + V+TGV+ + GSA +T+ + G + +D++ Sbjct: 5 REDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVY-GPRQGGPGIDKVEF-DRG 62 Query: 375 TFLFHYNFPPYSV-GETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITE 433 ++ G G V E + R + + TV V + + E Sbjct: 63 RLDVDVKLATFATSGPRGKVAQGDA-EREFSSIVHRALSGAVMTETFPKTTVDVFATVLE 121 Query: 434 SNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDF 493 +NGS A++ AS AL +AGV ++ V+ G + ++ + + Sbjct: 122 ANGSELCATIAAASAALCEAGVAMRDLVSACTGGGADGPNALLLDPARGEEAAAEAGVTL 181 Query: 494 KVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAI 541 S + +G + + A+ A + + +A+ Sbjct: 182 AYMCRLGEASQVVATGTWDGES---LDDAVQLAASGCARVDAALREAL 226 Score = 65.4 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 20/223 (8%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDF-----FPLTVNYQERTY 68 + ++TG+++ QA + V +D T V V G ++ PG D L V+ + T+ Sbjct: 15 RPIFVKTGVIS-QAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFDRGRLDVDVKLATF 73 Query: 69 AAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLF--PEGFVNEVQVIATVVSVNPQVNP 126 A S R + + E + ++ R + V V ATV+ N Sbjct: 74 A-----TSGPRGKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATVLEANGSELC 128 Query: 127 DIVAMIGASAALSLSGIPFNGPIGAARVGYIND--QYVLNPTQDELKESK--LDLVVAGT 182 +A ASAAL +G+ + A G + +L+P + E ++ + L Sbjct: 129 ATIA--AASAALCEAGVAMRDLVSACTGGGADGPNALLLDPARGEEAAAEAGVTLAYMCR 186 Query: 183 EAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 V + + + AV V + E ++ Sbjct: 187 LGEASQVVATG-TWDGESLDDAVQLAASGCARVDAALREALRS 228 >UniRef50_P38494 30S ribosomal protein S1 homolog n=22 Tax=Bacillales RepID=RS1H_BACSU Length = 382 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 8/140 (5%) Query: 580 TEETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRI 632 E+ +E + VK+ + D + + ++ +I +++ G V G V R+ Sbjct: 224 VEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVKPGDVLEGTVQRL 283 Query: 633 VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKE 691 V FGAFV I G EGLVHISQI++K + + L+ GQ V VKVL+V+ + RI LS++E Sbjct: 284 VSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRE 343 Query: 692 ATEQSQPAAAPEAPAAEQGE 711 E + + E Sbjct: 344 LEETPKADQEDYRQYQAKEE 363 Score = 66.1 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%) Query: 609 IRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQ 667 + EVG V G VT++ D V I + G++ IS+++ VEK +D ++ Sbjct: 3 EEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDVVK 62 Query: 668 MGQEVPVKVLEVDRQGRIRLSIKEATEQ-SQPAAAPEAPAAEQGE 711 + E+ +KV +V+ I LS + + + E E Sbjct: 63 VDDELDLKVTKVEDDALI-LSKRAVDADRAWEDLEKKFETKEVFE 106 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 16/183 (8%) Query: 532 HILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRAL----TEETGTTI 587 + ++ + + ++ ++ + I +V G I L E+ + Sbjct: 3 EEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEII-NVKQSGIIPISELSSLHVEKASDVV 61 Query: 588 EIEDDGTVKIAATDGEK------AKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAI 641 +++D+ +K+ + + A A R E++ + E V+ +V +V G V I Sbjct: 62 KVDDELDLKVTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI 121 Query: 642 GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAA 700 G G + S + VE TDY G+ + + V+E+DR + R+ LS + E Q Sbjct: 122 --GVRGFIPASLVEAHFVEDFTDY--KGKTLSLLVVELDRDKNRVILSHRAVVESEQANK 177 Query: 701 APE 703 E Sbjct: 178 KQE 180 >UniRef50_C7LJY0 Putative ribosomal protein S1 n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LJY0_SULMS Length = 648 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 99/262 (37%), Gaps = 19/262 (7%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG--ISALQMDIKIEGITKEIMQV 521 I + V ++ + G E L + +D M+ KI I + V Sbjct: 146 IIIFFVTARTKGGLIVVLFGIECFLPGSQIEKKPVKDFDYYVGQTMEGKIVKINNKTKNV 205 Query: 522 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG-----SVI 576 ++ L + ++ + + + + I G G + Sbjct: 206 VVS---HKILLEKDLEKKKLISQLEKGQILIGIVKNLTHYGSFIDVGGGIDGLCHITDIS 262 Query: 577 RALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGKV 629 + +E+ I + D K + + +++ G+V G V Sbjct: 263 WERIDHPSEKLEVGQIINFVILSIDQIKNRVQLGLKQLQTNPWIHFEKKLKKGKVLIGTV 322 Query: 630 TRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDRQ-GRIRL 687 + + D+GAFV + G EGLVH+S+++ ++++ +++++G++V + +L ++ ++ L Sbjct: 323 SVVTDYGAFVELFPGVEGLVHVSEMSWHQQLKSAKNFVKIGEKVKILILNLEHSAQKMSL 382 Query: 688 SIKEATEQSQPAAAPEAPAAEQ 709 S+K + + P + Sbjct: 383 SMKRLSPDPWENIENKYPLGTR 404 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 515 TKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGS 574 + E +Q + + + + + + I F P K +KD G Sbjct: 133 SWERIQNSWKKNEIIIFFVTARTKGGLIVVLFGIECFLPGSQIEKKP---VKDFDYYVGQ 189 Query: 575 VIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVD 634 + G ++I + + + K ++ ++ +++E G++ G V + Sbjct: 190 TME------GKIVKINNKTKNVVVSHKILLEKDLEKK--KLISQLEKGQILIGIVKNLTH 241 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEAT 693 +G+F+ +GGG +GL HI+ I+ +R++ ++ L++GQ + +L +D+ + R++L +K+ Sbjct: 242 YGSFIDVGGGIDGLCHITDISWERIDHPSEKLEVGQIINFVILSIDQIKNRVQLGLKQLQ 301 Query: 694 EQSQPAAAPEAPAAEQ 709 + + Sbjct: 302 TNPWIHFEKKLKKGKV 317 Score = 88.1 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 9/131 (6%) Query: 587 IEIEDDGTVKIAATDGEKAKHAIRR-------IEEITAEIEVGRVYTGKVTRIVDFGAFV 639 ++I + + I + K ++ E I + +G G V + G + Sbjct: 360 VKIGEKVKILILNLEHSAQKMSLSMKRLSPDPWENIENKYPLGTRNIGTVKSFTNCGVRL 419 Query: 640 AIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQ 697 + G EGL++ S I+ ++++ D + G V + VL +D ++ K+ T+ Sbjct: 420 ELEPGIEGLLYNSDISWTEKIKSGLDIYKKGDLVQLIVLGLDVMTRKLNFGCKQLTKNPW 479 Query: 698 PAAAPEAPAAE 708 P Sbjct: 480 ENLEQIFPIGS 490 Score = 48.8 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 614 EITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 E IE +Y GK+ +++D + IG EGL+ ++ + + ++ + Sbjct: 55 ENLQRIEEFYIYKGKIIQLIDRNVIIDIGFKAEGLIPFNEFREN-----KKFPKINDIIE 109 Query: 674 VKVLEVDRQGRIRLSI-KEATEQSQPAAAPEAPAAEQG 710 V V ++D +G++ +S K +S E Sbjct: 110 VIVEKLDYKGKLIISYNKAKKLKSWERIQNSWKKNEII 147 >UniRef50_Q6NDP1 30S ribosomal protein S1 n=165 Tax=Proteobacteria RepID=RS1_RHOPA Length = 565 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 88/265 (33%), Gaps = 29/265 (10%) Query: 464 IAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVAL 523 + G + D V + + + L+MD + I Sbjct: 125 VKGGFTVDLDGAVAFLPRSQVDIRPIRDVAPLMNNSQPFQILKMDRRRGNI--------- 175 Query: 524 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGG--------SV 575 +R +L E I + N + GG + Sbjct: 176 ---VVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDI 232 Query: 576 IRALTEETGTTIEIEDDGTVKIAATDGEKAKHAI-------RRIEEITAEIEVGRVYTGK 628 + I VKI + E + ++ + I A+ + +TG+ Sbjct: 233 AWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGR 292 Query: 629 VTRIVDFGAFVAIGGGKEGLVHISQIADKRVE-KVTDYLQMGQEVPVKVLEVDR-QGRIR 686 VT I D+GAFV + G EGL+H+S+++ + + QEV V+VLEVD + RI Sbjct: 293 VTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRIS 352 Query: 687 LSIKEATEQSQPAAAPEAPAAEQGE 711 L +K+ + P E Sbjct: 353 LGLKQTMRNPWEVFVEKHPVGSTVE 377 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 22/205 (10%) Query: 517 EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIG-----K 571 + ++V + + I M+Q ++ P I P I D Sbjct: 248 QTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEP 307 Query: 572 GGSVIRALTE--------ETGTTIEIEDDGTVKIAATDGEKAKHA-------IRRIEEIT 616 G + ++E G + + V++ D K + + E Sbjct: 308 GIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFV 367 Query: 617 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV-EKVTDYLQMGQEVPVK 675 + VG G+V +FG F+ + G +G+VH+S + K E+V D + G V Sbjct: 368 EKHPVGSTVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAV 427 Query: 676 VLEVD-RQGRIRLSIKEATEQSQPA 699 VL+VD + RI L +K+ Sbjct: 428 VLDVDVEKERISLGVKQLEGDPFAE 452 Score = 62.3 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 27/278 (9%) Query: 454 GVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEG 513 G+ K + G V +Y ++ + L + ++ KI Sbjct: 278 GIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHP-----GKIVS 332 Query: 514 ITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVI---G 570 ++E+ L R LG ++Q + P E P T++ + G Sbjct: 333 TSQEVEVQVLEVDSVKRRISLG-LKQTMRNPWEVFVEKHPVGSTVEGEVKNKTEFGLFLG 391 Query: 571 KGGSVI----------RALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIE------E 614 G V + E+ + D + D EK + ++ + Sbjct: 392 LDGDVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEGDPFA 451 Query: 615 ITAEIEVGRVYTGKVTRIVDFGAFVAI-GGGKEGLVHISQIADKRVEKVTDYLQMGQEVP 673 +++ G V T +V + + G V I G + S++A R ++ +D +G++V Sbjct: 452 EPGDVKKGAVVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVD 511 Query: 674 VKVLEVDRQ-GRIRLSIKEATEQSQPAAAPEAPAAEQG 710 +V++ D++ ++++SIK + A + +++ G Sbjct: 512 ARVIQFDKKARKVQVSIKALEVAEEKEAIAQYGSSDSG 549 Score = 43.0 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 52/140 (37%), Gaps = 6/140 (4%) Query: 565 IKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV 624 +++ G G + + ++ ++ + + + + ++ + Sbjct: 59 LREFAGPGRDNEIKVGDTVEVFLDRIENALGEAVLSRDKARRE--ESWGKLEKAFQNNEK 116 Query: 625 YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD-RQG 683 G + V G V + G + SQ+ + + V + Q ++L++D R+G Sbjct: 117 VFGVIFNQVKGGFTVDLDGAV-AFLPRSQVDIRPIRDVAPLMNNSQP--FQILKMDRRRG 173 Query: 684 RIRLSIKEATEQSQPAAAPE 703 I +S + E+++ E Sbjct: 174 NIVVSRRTVLEETRAEQRQE 193 >UniRef50_B7IE33 4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thermosipho africanus TCF52B RepID=B7IE33_THEAB Length = 811 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 581 EETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVA 640 + I+ D KI + E + +T + +VG + +GKV I+ +G +V Sbjct: 501 QSVKLYIKKIDKENRKILLSLKELM---PDPWQNVTKKYKVGDIVSGKVKNILSYGFYVN 557 Query: 641 IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPA 699 + G +GLVHI I R K++D + +G V V + E+D ++RLS KE Sbjct: 558 LEPGVDGLVHIDDIFWGRRGKISDIVSVGDIVKVMIKEIDPNNKKMRLSYKEVEGDPWEN 617 Query: 700 AAPEAPAAEQG 710 + P Sbjct: 618 IEEKYPVGNTI 628 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 22/233 (9%) Query: 500 DGISALQMDIKIEGITK--EIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHT 557 + + +K+E + + +++ + + IL +++ + P ++++ Sbjct: 482 NSEVSYDTSLKVEDVLSEGQSVKLYIKKIDKENRKILLSLKELMPDPWQNVTKKYKVGDI 541 Query: 558 IKINPDKIKDV-------IGKGG-----SVIRALTEETGTTIEIEDDGTVKIAATDGEKA 605 + I G G + + + + D V I D Sbjct: 542 VSGKVKNILSYGFYVNLEPGVDGLVHIDDIFWGRRGKISDIVSVGDIVKVMIKEIDPNNK 601 Query: 606 KHAIR-------RIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKR 658 K + E I + VG TG V+ I+D G V I G G IS+I+ Sbjct: 602 KMRLSYKEVEGDPWENIEEKYPVGNTITGTVSFILDKGVIVEIERGISGFCPISEISWNY 661 Query: 659 VEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPEAPAAEQG 710 + V D L GQ+V + E+D++ R +RLSIK E + Sbjct: 662 ISSVKDVLNEGQKVKAVITELDKENRKMRLSIKRVQENPWKKFKDNHKIGDIV 714 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 585 TTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGG 644 I+ E+ G + + E+ E + G + G V +I FGAFV I G Sbjct: 418 KIIKFEERGKRLNIILSRKAF--INEQKEKFFNERKEGDIIEGIVKKIEKFGAFVRIFEG 475 Query: 645 KEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR-IRLSIKEATEQSQPAAAPE 703 +GL+ S+++ KV D L GQ V + + ++D++ R I LS+KE + Sbjct: 476 IDGLLPNSEVSYDTSLKVEDVLSEGQSVKLYIKKIDKENRKILLSLKELMPDPWQNVTKK 535 Query: 704 APAAEQG 710 + Sbjct: 536 YKVGDIV 542 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 23/175 (13%) Query: 538 EQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597 + I IS F P +KDV+ +G V +TE ++ + Sbjct: 638 KGVIVEIERGISGFCPISEISWNYISSVKDVLNEGQKVKAVITE-------LDKENRKMR 690 Query: 598 AATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK 657 + + ++ ++G + KV + + G +V E + S Sbjct: 691 LSIK----RVQENPWKKFKDNHKIGDIVAVKVIKELKSG-YVGACENVEIYLPKS----- 740 Query: 658 RVEKVTDYLQMGQEVPVKVLEVDRQG---RIRLSIKEATEQSQPAAAPEAPAAEQ 709 V + +G E+ VK++++ G RI S KE + + E E+ Sbjct: 741 ---HVLKEITLGDELKVKIIQIKEDGEILRITASEKELENEKVIDSLKEEFENER 792 Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 81/237 (34%), Gaps = 29/237 (12%) Query: 481 ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA 540 I G ++ AG + LQM+ E + + + + + V+ + Sbjct: 244 ISGTSTPKEIVEEIAAGLKKLGGMLQMENNFEKLLDSYL---FDNVRKGEIVEAVVLRKG 300 Query: 541 INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT 600 + D + + T +KD K G + + +D+G ++ Sbjct: 301 ESEIFVDFGWKSEGVVTSDELVKDVKDY--KIGEKLSLILLRKN-----DDEGIAYLS-- 351 Query: 601 DGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ--IADKR 658 EK ++ + E + + E G GKV + G V I + + S+ I D Sbjct: 352 --EKIVYSKKLKEILKEKFEKGEKIIGKVNSEIKGGYKVLIENTIQAFLPKSESMIFDGN 409 Query: 659 V-EKVTDYLQMGQEVPVKVLEVDRQGR---IRLSIKEATEQSQPAAAPEAPAAEQGE 711 + + + K+++ + +G+ I LS K + + E + E Sbjct: 410 IPKSP---------LEFKIIKFEERGKRLNIILSRKAFINEQKEKFFNERKEGDIIE 457 >UniRef50_D2VA88 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VA88_NAEGR Length = 280 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 22/190 (11%) Query: 305 VRSRVLAGEPRIDGREK-DMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQ 363 + ++L R D R+ + +R + V GVL + GS F++G T + + Sbjct: 1 MNKQIL----RRDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGP------ 50 Query: 364 VLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY 423 + M E+ D + F P E + + ++ + V+ + +P Sbjct: 51 --ESSMKEKGDQAIIDVMFQP-------RDKKASEEEKEYELIIRQTLENVI-LTNIYPR 100 Query: 424 T-VRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDIL 482 T + + ++ + +G AS+ ASLAL+DAGV +K + + + GD + + I Sbjct: 101 TVITISIQVVQYDGCLLSASLNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIE 160 Query: 483 GDEDHLGDMD 492 D + D Sbjct: 161 QDFSSILHND 170 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 21/166 (12%) Query: 14 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA-KPGQDFFPLTVNYQERTYAAGR 72 + +E G++ + A +V S +T V +V G + + K D + V +Q Sbjct: 18 RDMQVELGVLGK-ADGSVKFSQGNTTVICSVCGPESSMKEKGDQAIIDVMFQP------- 69 Query: 73 IPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEV--QVIATVVSVNPQVNPDIVA 130 R+ + SE E +I + + + + VV + + + Sbjct: 70 -------RDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDGCLLS--AS 120 Query: 131 MIGASAALSLSGIPFNGPIGAARVGYIN-DQYVLNPTQDELKESKL 175 + AS AL +G+ + ++ Y+N +L+PT+ E S + Sbjct: 121 LNAASLALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDFSSI 166 >UniRef50_C0QM45 RpsA1 n=2 Tax=Desulfobacteraceae RepID=C0QM45_DESAH Length = 486 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 110/310 (35%), Gaps = 29/310 (9%) Query: 426 RVVSEITESNGS--SSMASVCGASLALM-----DAGVPIKAAVAG-IAMGLVKEGDNYVV 477 + + N S + S+ GA A M G P++ VAG I G Sbjct: 83 EISLYVVSMNESEITLSKSLSGAGTATMLEEASFTGTPVEGKVAGTIKGGFSVTIMGKRA 142 Query: 478 LSDILGDEDHLGDMDFKVAGSRDG--ISALQMDIKIEGITKEIMQVALNQAKGARLHILG 535 + + + GS I+ + + +++ + N+ + Sbjct: 143 FCPVSQMDIKYIEDTESYVGSTFNFIITRFEEGGRNIVVSRRDLLNLENKDRQDAFFKEA 202 Query: 536 VMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTV 595 + + + I + + + + + ++ ++ + V Sbjct: 203 KEGDILTGSVTKLMPYGAFIELVPG-----VEGMAHISELSWSRVDKAEEVVKQGETVKV 257 Query: 596 KIAATDGE------------KAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGG 643 K+ + + K + + I G TGKV R+ FGAFV I Sbjct: 258 KLLKIETKEGADMPKISLSIKQALSEDPWDSQAGTIAPGDQLTGKVVRLAPFGAFVEIAP 317 Query: 644 GKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD-RQGRIRLSIKEATEQSQPAAA 701 G +GLVH+S+++ +R+ K D + +G+ V V V ++D + RI LSIK+A A Sbjct: 318 GMDGLVHLSEMSHTRRIVKADDVVTLGEMVQVVVKDIDIEKRRISLSIKDALGDPWAGIA 377 Query: 702 PEAPAAEQGE 711 + E Sbjct: 378 EKYAPGTIVE 387 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 16/239 (6%) Query: 478 LSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGI-TKEIMQVALNQAKGARLHILGV 536 L D G+ H + + S + + + G T +++ A + G Sbjct: 69 LLDKNGEFHHAVGDEISLYVVSMNESEITLSKSLSGAGTATMLEEASFTGTPVEGKVAGT 128 Query: 537 MEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 596 ++ + F P +++ I+D GS + E+ G Sbjct: 129 IKGGFSVTIMGKRAFCPV---SQMDIKYIEDTESYVGSTFNFIITRF------EEGGRNI 179 Query: 597 IAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656 + + R + E + G + TG VT+++ +GAF+ + G EG+ HIS+++ Sbjct: 180 VVSRRDLLNLENKDRQDAFFKEAKEGDILTGSVTKLMPYGAFIELVPGVEGMAHISELSW 239 Query: 657 KRVEKVTDYLQMGQEVPVKVLEVDRQG-----RIRLSIKE-ATEQSQPAAAPEAPAAEQ 709 RV+K + ++ G+ V VK+L+++ + +I LSIK+ +E + A +Q Sbjct: 240 SRVDKAEEVVKQGETVKVKLLKIETKEGADMPKISLSIKQALSEDPWDSQAGTIAPGDQ 298 Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 15/142 (10%) Query: 582 ETGTTIEIEDDGTVKIAATDGEKAKHAIR-------RIEEITAEIEVGRVYTGKVTRIVD 634 + + + + V + D EK + ++ I + G + + + Sbjct: 336 KADDVVTLGEMVQVVVKDIDIEKRRISLSIKDALGDPWAGIAEKYAPGTIVETTMEKREQ 395 Query: 635 FGAFVAIGGGKEGLVHISQIADKRVEKVTDY--LQMGQEVPVKVLEVDRQG-RIRL---S 688 FG F+++ G GL+ S + + K +DY L+ G +V V V D + RI L Sbjct: 396 FGIFLSLEPGVTGLLPASVAS--KASKPSDYDSLKPGDKVTVMVESADEEKRRISLAPPE 453 Query: 689 IKEATEQSQPAAAPEAPAAEQG 710 +K++ + + A A +AP + G Sbjct: 454 MKDSDDWRKFAPAQKAPMGDMG 475 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.146 0.391 Lambda K H 0.267 0.0447 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,495,937,608 Number of Sequences: 3077464 Number of extensions: 232354171 Number of successful extensions: 653112 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2094 Number of HSP's successfully gapped in prelim test: 1331 Number of HSP's that attempted gapping in prelim test: 638744 Number of HSP's gapped (non-prelim): 8175 length of query: 711 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 575 effective length of database: 621,861,252 effective search space: 357570219900 effective search space used: 357570219900 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 97 (41.8 bits)