Phyre 2 Results for P33011

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Email | l.a.kelley@imperial.ac.uk
Description | P33011
Date | Thu Jan 5 11:50:46 GMT 2012
Unique Job ID | c9f8ca49a98b7c75

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1rwta_
Top template information
Fold:Chlorophyll a-b binding protein Superfamily:Chlorophyll a-b binding protein Family:Chlorophyll a-b binding protein
Confidence and coverage
Confidence: | 19.6% | Coverage: | 11%
37 residues ( 11% of your sequence) have been modelled with 19.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | A | D | K | S | L | S | P | F | E | I | R | V | Y | R | H | Y | R | I | V | H | G | T | R | V | A | L | A | F | L | L | T | F | L | I | I | R | L | F | T | I | P | E | S | T | W | P | L | V | T | M | V | V | I | M | G | P | I | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | W | G | N | V | V | P | R | A | F | E | R | I | G | G | T | V | L | G | S | I | L | G | L | I | A | L | Q | L | E | L | I | S | L | P | L | M | L | V | W | C | A | A | A | M | F | L | C | G | W | L | A | L | G | K | K | P | Y | Q | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | L | I | G | V | T | L | A | I | V | V | G | S | P | T | G | E | I | D | T | A | L | W | R | S | G | D | V | I | L | G | S | L | L | A | M | L | F | T | G | I | W | P | Q | R | A | F | I | H | W | R | I | Q | L | A | K | S | L | T | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Y | N | R | V | Y | Q | S | A | F | S | P | N | L | L | E | R | P | R | L | E | S | H | L | Q | K | L | L | T | D | A | V | K | M | R | G | L | I | A | P | A | S | K | E | T | R | I | P | K | S | I | Y | E | G | I | Q | T | I | N | R | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | L | V | C | M | L | E | L | Q | I | N | A | Y | W | A | T | R | P | S | H | F | V | L | L | N | A | Q | K | L | R | D | T | Q | H | M | M | Q | Q | I | L | L | S | L | V | H | A | L | Y | E | G | N | P | Q | P | V | F | A | N | T | E | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | .
Sequence |  | L | N | D | A | V | E | E | L | R | Q | L | L | N | N | H | H | D | L | K | V | V | E | T | P | I | Y | G | Y | V | W | L | N | M | E | T | A | H | Q | L | E | L | L | S | N | L | I | C | R | A | L | R | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1rwta_ |

### PDB 1rwt chain A

Region: 6 - 43
Aligned: 37
Modelled: 38
Confidence: 19.6%
Identity: 22%
Fold: Chlorophyll a-b binding protein
Superfamily: Chlorophyll a-b binding protein
Family: Chlorophyll a-b binding protein

Phyre2
2 |
| c1oy8A_ |

### PDB 1oy8 chain A

Region: 73 - 163
Aligned: 91
Modelled: 91
Confidence: 16.2%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2
3 |
| d3cx5h1 |

### PDB 3cx5 chain H domain 1

Region: 6 - 39
Aligned: 33
Modelled: 34
Confidence: 13.1%
Identity: 12%
Fold: Single transmembrane helix
Superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2
4 |
| d2b0ha1 |

### PDB 2b0h chain A domain 1

Region: 163 - 289
Aligned: 126
Modelled: 127
Confidence: 12.7%
Identity: 13%
Fold: Four-helical up-and-down bundle
Superfamily: alpha-catenin/vinculin-like
Family: VBS domain

Phyre2
5 |
| c3cwbT_ |

### PDB 3cwb chain T

Region: 6 - 39
Aligned: 33
Modelled: 34
Confidence: 9.2%
Identity: 42%
PDB header:oxidoreductase
Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone-
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d

Phyre2
6 |
| c3k07A_ |

### PDB 3k07 chain A

Region: 18 - 163
Aligned: 141
Modelled: 146
Confidence: 9.0%
Identity: 8%
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa

Phyre2
7 |
| d2r6gf1 |

### PDB 2r6g chain F domain 1

Region: 70 - 142
Aligned: 73
Modelled: 73
Confidence: 8.6%
Identity: 8%
Fold: MalF N-terminal region-like
Superfamily: MalF N-terminal region-like
Family: MalF N-terminal region-like

Phyre2
8 |
| d1fx8a_ |

### PDB 1fx8 chain A

Region: 66 - 169
Aligned: 103
Modelled: 104
Confidence: 8.2%
Identity: 15%
Fold: Aquaporin-like
Superfamily: Aquaporin-like
Family: Aquaporin-like

Phyre2
9 |
| c1ldaA_ |

### PDB 1lda chain A

Region: 66 - 169
Aligned: 103
Modelled: 104
Confidence: 8.2%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol

Phyre2
10 |
| c2yzwA_ |

### PDB 2yzw chain A

Region: 66 - 88
Aligned: 23
Modelled: 23
Confidence: 8.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribosylglycohydrolase;
PDBTitle: adp-ribosylglycohydrolase-related protein complex

Phyre2
11 |
| d1iwga8 |

### PDB 1iwg chain A domain 8

Region: 73 - 164
Aligned: 92
Modelled: 92
Confidence: 7.9%
Identity: 17%
Fold: Multidrug efflux transporter AcrB transmembrane domain
Superfamily: Multidrug efflux transporter AcrB transmembrane domain
Family: Multidrug efflux transporter AcrB transmembrane domain

Phyre2
12 |
| c2kvpA_ |

### PDB 2kvp chain A

Region: 163 - 289
Aligned: 126
Modelled: 127
Confidence: 7.7%
Identity: 13%
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin vbs3 domain, 1815-1973

Phyre2
13 |
| c2xq2A_ |

### PDB 2xq2 chain A

Region: 59 - 169
Aligned: 111
Modelled: 111
Confidence: 7.5%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt

Phyre2
14 |
| c2wse4_ |

### PDB 2wse chain 4

Region: 6 - 46
Aligned: 40
Modelled: 41
Confidence: 7.1%
Identity: 23%
PDB header:photosynthesis
Chain: 4: PDB Molecule:chlorophyll a-b binding protein p4,
PDBTitle: improved model of plant photosystem i

Phyre2
15 |
| c2wocA_ |

### PDB 2woc chain A

Region: 71 - 88
Aligned: 18
Modelled: 18
Confidence: 6.8%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribosyl-[dinitrogen reductase] glycohydrolase;
PDBTitle: crystal structure of the dinitrogenase reductase-activating2 glycohydrolase (drag) from rhodospirillum rubrum

Phyre2
16 |
| c3hfwA_ |

### PDB 3hfw chain A

Region: 71 - 88
Aligned: 18
Modelled: 18
Confidence: 6.8%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase;
PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1)

Phyre2
17 |
| c3g9dB_ |

### PDB 3g9d chain B

Region: 71 - 88
Aligned: 18
Modelled: 18
Confidence: 6.7%
Identity: 28%
PDB header:hydrolase
Chain: B: PDB Molecule:dinitrogenase reductase activacting
PDBTitle: crystal structure glycohydrolase

Phyre2
18 |
| c2ht2B_ |

### PDB 2ht2 chain B

Region: 73 - 176
Aligned: 92
Modelled: 104
Confidence: 6.7%
Identity: 21%
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex

Phyre2
19 |
| d1j4na_ |

### PDB 1j4n chain A

Region: 66 - 167
Aligned: 101
Modelled: 102
Confidence: 6.7%
Identity: 9%
Fold: Aquaporin-like
Superfamily: Aquaporin-like
Family: Aquaporin-like

Phyre2
20 |
| c3oq3A_ |

### PDB 3oq3 chain A

Region: 232 - 352
Aligned: 114
Modelled: 121
Confidence: 6.2%
Identity: 15%
PDB header:cytokine/viral protein
Chain: A: PDB Molecule:interferon alpha-5;
PDBTitle: structural basis of type-i interferon sequestration by a poxvirus2 decoy receptor

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1rwta_ |
|  | 19.6 | 22 | Fold:Chlorophyll a-b binding protein Superfamily:Chlorophyll a-b binding protein Family:Chlorophyll a-b binding protein
2 | c1oy8A_ |
|  | 16.2 | 18 | PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
3 | d3cx5h1 |
|  | 13.1 | 12 | Fold:Single transmembrane helix Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
4 | d2b0ha1 |
|  | 12.7 | 13 | Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:VBS domain
5 | c3cwbT_ |
|  | 9.2 | 42 | PDB header:oxidoreductase Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone- PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
6 | c3k07A_ |
|  | 9.0 | 8 | PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa
7 | d2r6gf1 |
|  | 8.6 | 8 | Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like
8 | d1fx8a_ |
|  | 8.2 | 15 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
9 | c1ldaA_ |
|  | 8.2 | 15 | PDB header:transport protein Chain: A: PDB Molecule:glycerol uptake facilitator protein; PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
10 | c2yzwA_ |
|  | 8.0 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosylglycohydrolase; PDBTitle: adp-ribosylglycohydrolase-related protein complex
11 | d1iwga8 |
|  | 7.9 | 17 | Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain
12 | c2kvpA_ |
|  | 7.7 | 13 | PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin vbs3 domain, 1815-1973
13 | c2xq2A_ |
|  | 7.5 | 13 | PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt
14 | c2wse4_ |
|  | 7.1 | 23 | PDB header:photosynthesis Chain: 4: PDB Molecule:chlorophyll a-b binding protein p4, PDBTitle: improved model of plant photosystem i
15 | c2wocA_ |
|  | 6.8 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:adp-ribosyl-[dinitrogen reductase] glycohydrolase; PDBTitle: crystal structure of the dinitrogenase reductase-activating2 glycohydrolase (drag) from rhodospirillum rubrum
16 | c3hfwA_ |
|  | 6.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase; PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1)
17 | c3g9dB_ |
|  | 6.7 | 28 | PDB header:hydrolase Chain: B: PDB Molecule:dinitrogenase reductase activacting PDBTitle: crystal structure glycohydrolase
18 | c2ht2B_ |
|  | 6.7 | 21 | PDB header:membrane protein Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca; PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
19 | d1j4na_ |
|  | 6.7 | 9 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like
20 | c3oq3A_ |
|  | 6.2 | 15 | PDB header:cytokine/viral protein Chain: A: PDB Molecule:interferon alpha-5; PDBTitle: structural basis of type-i interferon sequestration by a poxvirus2 decoy receptor
21 | d1otsa_ |
| not modelled | 6.1 | 16 | Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel
22 | d2nwwa1 |
| not modelled | 5.6 | 13 | Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein
23 | c3kyiA_ |
| not modelled | 5.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:putative histidine protein kinase; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
24 | c1rkcA_ |
| not modelled | 5.4 | 11 | PDB header:cell adhesion, structural protein Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head (1-258) in complex with talin's2 vinculin binding site 3 (residues 1944-1969)
25 | c1iijA_ |
| not modelled | 5.3 | 37 | PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
26 | d1st6a3 |
| not modelled | 5.3 | 9 | Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0