BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (55 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P37771 Uncharacterized protein yhfG n=77 Tax=Enterobact... 92 7e-18 UniRef50_C9Y255 Uncharacterized protein yhfG n=6 Tax=Enterobacte... 89 4e-17 UniRef50_UPI00017F3104 cell filamentation protein Fic n=1 Tax=Es... 49 3e-05 UniRef50_C8QE17 Putative uncharacterized protein n=1 Tax=Pantoea... 43 0.004 >UniRef50_P37771 Uncharacterized protein yhfG n=77 Tax=Enterobacteriaceae RepID=YHFG_SALTY Length = 55 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 44/55 (80%), Positives = 48/55 (87%) Query: 1 MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER 55 MKKLTDKQKSR WE +RN NFQ SRRLEG+E+PLVTLTA EAL RL+ELR HYER Sbjct: 1 MKKLTDKQKSRFWEQRRNVNFQQSRRLEGIEIPLVTLTADEALVRLDELRRHYER 55 >UniRef50_C9Y255 Uncharacterized protein yhfG n=6 Tax=Enterobacteriaceae RepID=C9Y255_CROTZ Length = 56 Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 41/54 (75%), Positives = 49/54 (90%) Query: 2 KKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER 55 +KLTDKQKSRLW+ Q+N+NFQAS RLEG+E+PLVTL+ EALAR+EELR HYER Sbjct: 3 RKLTDKQKSRLWDAQKNQNFQASNRLEGIEVPLVTLSREEALARIEELRGHYER 56 >UniRef50_UPI00017F3104 cell filamentation protein Fic n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F3104 Length = 112 Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/33 (75%), Positives = 26/33 (78%) Query: 1 MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMP 33 MKKLTDKQKSRLWE QRN NFQAS LE + P Sbjct: 1 MKKLTDKQKSRLWEQQRNVNFQASCLLEKGKGP 33 >UniRef50_C8QE17 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QE17_9ENTR Length = 56 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 3 KLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHY 53 KLTDKQK+ LW+ +R ++QAS RL G + +T +A RL LR Y Sbjct: 4 KLTDKQKATLWQQRRAASYQASCRLAGYTLSEPAITLEQADERLTSLRRQY 54 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37771 Uncharacterized protein yhfG n=77 Tax=Enterobact... 73 3e-12 UniRef50_C9Y255 Uncharacterized protein yhfG n=6 Tax=Enterobacte... 72 4e-12 UniRef50_UPI00017F3104 cell filamentation protein Fic n=1 Tax=Es... 61 1e-08 Sequences not found previously or not previously below threshold: UniRef50_C8QE17 Putative uncharacterized protein n=1 Tax=Pantoea... 42 0.004 CONVERGED! >UniRef50_P37771 Uncharacterized protein yhfG n=77 Tax=Enterobacteriaceae RepID=YHFG_SALTY Length = 55 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 44/55 (80%), Positives = 48/55 (87%) Query: 1 MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER 55 MKKLTDKQKSR WE +RN NFQ SRRLEG+E+PLVTLTA EAL RL+ELR HYER Sbjct: 1 MKKLTDKQKSRFWEQRRNVNFQQSRRLEGIEIPLVTLTADEALVRLDELRRHYER 55 >UniRef50_C9Y255 Uncharacterized protein yhfG n=6 Tax=Enterobacteriaceae RepID=C9Y255_CROTZ Length = 56 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 41/54 (75%), Positives = 49/54 (90%) Query: 2 KKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHYER 55 +KLTDKQKSRLW+ Q+N+NFQAS RLEG+E+PLVTL+ EALAR+EELR HYER Sbjct: 3 RKLTDKQKSRLWDAQKNQNFQASNRLEGIEVPLVTLSREEALARIEELRGHYER 56 >UniRef50_UPI00017F3104 cell filamentation protein Fic n=1 Tax=Escherichia coli O157:H7 str. EC4024 RepID=UPI00017F3104 Length = 112 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 25/33 (75%), Positives = 26/33 (78%) Query: 1 MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMP 33 MKKLTDKQKSRLWE QRN NFQAS LE + P Sbjct: 1 MKKLTDKQKSRLWEQQRNVNFQASCLLEKGKGP 33 >UniRef50_C8QE17 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QE17_9ENTR Length = 56 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 3 KLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALARLEELRSHY 53 KLTDKQK+ LW+ +R ++QAS RL G + +T +A RL LR Y Sbjct: 4 KLTDKQKATLWQQRRAASYQASCRLAGYTLSEPAITLEQADERLTSLRRQY 54 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.133 0.376 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 185,553,625 Number of Sequences: 3077464 Number of extensions: 4371511 Number of successful extensions: 14881 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14873 Number of HSP's gapped (non-prelim): 8 length of query: 55 length of database: 1,040,396,356 effective HSP length: 28 effective length of query: 27 effective length of database: 954,227,364 effective search space: 25764138828 effective search space used: 25764138828 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 87 (38.2 bits)