16/01/2012 18:51:32 : INFO  : Run start: Mon Jan 16 18:51:30 GMT 2012
16/01/2012 18:51:42 : INFO  : Initialised job
16/01/2012 18:51:45 : INFO  : Renaming log file 'phyre2_20120116_185129.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c8ab4f0a13e27bfd/phyre_20120116_185129.log'
16/01/2012 18:51:47 : INFO  : Initialised job:
Sequence
>batch____
MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEERVITWIGNGADVLMER
ALTWARQERATQRKTMGKPPVDDDIPAEEQVRILRKLFDRYYGEVAEEGTFLFPHVADTL
GALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGGDDVQNKKPHPDPLLLVAERM
GIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGEAIDLSQPDVIYQSINDLLPALG
LPHSENQESKND

16/01/2012 18:51:49 : INFO  : Checked sequence
16/01/2012 18:51:55 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 18:51:57 : INFO  : PSI-BLAST 3 iterations
16/01/2012 18:54:11 : INFO  : PSI-BLAST 5 iterations
16/01/2012 18:57:27 : INFO  : Finished PSI-BLAST
16/01/2012 18:57:31 : INFO  : Running Buildali to generate a3m file
16/01/2012 19:57:14 : INFO  : Converting to HMM
16/01/2012 19:57:24 : INFO  : Calibrating HMM
16/01/2012 19:57:40 : INFO  : Searching HMM database
16/01/2012 20:03:25 : INFO  : Finished buildali
16/01/2012 20:03:28 : INFO  : Predicting secondary structure
16/01/2012 20:03:41 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 20:03:43 : INFO  : Predicting Disordered regions
16/01/2012 20:03:51 : INFO  : Predicted Disorder (Disopred)
16/01/2012 20:03:54 : INFO  : Running memsat_svm check
16/01/2012 20:08:06 : INFO  : Running memsat_svm full
16/01/2012 20:10:35 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c8ab4f0a13e27bfd'
16/01/2012 20:10:37 : INFO  : Initialising fold library search
16/01/2012 20:10:43 : INFO  : Initialised search input
16/01/2012 20:10:46 : INFO  : Building Ensemble models
16/01/2012 20:10:51 : INFO  : Building hh.d2hsza1.model.1.pdb
16/01/2012 20:11:10 : INFO  : Building c3iruA_.1.pdb
16/01/2012 20:11:29 : INFO  : Building d2hsza1.2.pdb
16/01/2012 20:11:49 : INFO  : Building d1swva_.3.pdb
16/01/2012 20:12:09 : INFO  : Building c3mc1A_.4.pdb
16/01/2012 20:12:29 : INFO  : Building c3d6jA_.5.pdb
16/01/2012 20:12:50 : INFO  : Building c2hi0B_.6.pdb
16/01/2012 20:13:14 : INFO  : Building d2ah5a1.7.pdb
16/01/2012 20:13:37 : INFO  : Building c3dv9A_.8.pdb
16/01/2012 20:14:02 : INFO  : Building d2fdra1.9.pdb
16/01/2012 20:14:22 : INFO  : Building c3s6jC_.10.pdb
16/01/2012 20:14:42 : INFO  : Building d1te2a_.11.pdb
16/01/2012 20:15:03 : INFO  : Building c2yy6B_.12.pdb
16/01/2012 20:15:24 : INFO  : Building c3sd7A_.13.pdb
16/01/2012 20:15:43 : INFO  : Building d2gfha1.14.pdb
16/01/2012 20:16:01 : INFO  : Building c2pibA_.15.pdb
16/01/2012 20:16:22 : INFO  : Building c2no5B_.16.pdb
16/01/2012 20:16:42 : INFO  : Building c3e58A_.17.pdb
16/01/2012 20:17:04 : INFO  : Building d2go7a1.18.pdb
16/01/2012 20:17:26 : INFO  : Building c3qnmA_.19.pdb
16/01/2012 20:17:50 : INFO  : Building c3nuqA_.20.pdb
16/01/2012 20:18:28 : INFO  : Finished HH model building
16/01/2012 20:18:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 20:19:34 : INFO  : html domain output complete ID 'c8ab4f0a13e27bfd'
16/01/2012 21:11:51 : INFO  : Run end  : Mon Jan 16 21:11:50 GMT 2012
