BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (169 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 346 2e-94 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 108 6e-23 UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 79 6e-14 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 65 9e-10 UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 63 4e-09 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 61 2e-08 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 60 2e-08 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 55 7e-07 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 55 1e-06 UniRef50_C5Q3Q3 Putative uncharacterized protein n=1 Tax=Staphyl... 48 1e-04 UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 43 0.004 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 41 0.014 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ Sbjct: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN Sbjct: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 Query: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP Sbjct: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 ++LE ++ D+ SF+ ++ ++ ++ LP++FV DE ++EYAV+PLL + GPL Sbjct: 6 ELLETVEECDDATSFLCASNKLINLKLKALLPNIFV-QDELVMEYAVEPLLKEDGPLVTT 64 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISN--VNSITRN 125 DV +L++A+GK+ YADI ++Q Y Q + F DDM +DFISN + S ++ Sbjct: 65 DVVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMIYDFISNQAILSTQQD 124 Query: 126 AMLYDALKAMKFADFSVWSEARFSGMVKTALTLAV 160 + +++ +KF+ F V+S+ R+ ++KT L L+ Sbjct: 125 SFYLESINQLKFSSFEVFSQMRYESLIKTVLKLSC 159 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 M T ED+VLE+L+ QD F TIL + + + F +E V+YA++PLL Q Sbjct: 1 MTTHQEDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAF-RQEEYAVKYAIEPLLNQ 59 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPL ++V L+LI+ALG + Y D+ + + +L + F+D D ++ ++ Sbjct: 60 SGPLGQLEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLH 119 Query: 121 SITRNAMLYDALKAMKFA-DFSVWSEARFSGMVKTALTLAVTTTLKEL 167 +++ M+ A + F R +V++AL LAV + EL Sbjct: 120 GVSQGGMMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTEL 167 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + S + A +L + + + +F D+ V+YAV+PLL SGPL Sbjct: 27 ENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVF-RKDDYAVKYAVEPLLDGSGPLG 85 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG + + Y D LN F DD ++ + Sbjct: 86 DLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFTDDEILGPFGELHCVV-- 143 Query: 126 AMLYDALKAMKFADFSV--WSEARFSGMVKTALTLAVTTTLKELT 168 L A A++ +D + + R+ +V++ + L++T L ++ Sbjct: 144 -ALPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRIS 187 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVF-RKDDYAVKYAVEPLLDGDGPLG 87 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG +++ Y D LN F DD ++ + Sbjct: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA-- 145 Query: 126 AMLYDALKAMKFADFSVWSE--ARFSGMVKTALTLAVTTTLKELT 168 + AD S+++ R+ V++ + L++T + +++ Sbjct: 146 --ALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKIS 188 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 ++T ED V E+L +N F +L + Q + F +E V+YA++PLL Sbjct: 6 VSTYQEDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAF-RQEEYAVKYAIEPLLNG 64 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 GPL D+ + L+LI+ALG + + DI F + +L F ++ D ++ ++ Sbjct: 65 KGPLADLHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLH 124 Query: 121 SITRNAMLYDALKAMKFAD--FSVWSEARFSGMVKTALTLAVTTTLKELT 168 S+ +N + + AD R ++++AL LAV+ L EL+ Sbjct: 125 SL-QNISMMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELS 173 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 4/168 (2%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 + E D+LE+L+ + F T +L + I + +F D V+ V+PLL +GP Sbjct: 22 INESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIF-RKDNFAVKSVVEPLLHDTGP 80 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+L++ LG + ++ DI H + + LN F D I +N + Sbjct: 81 LGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDPQILAPIKALNLVK 140 Query: 124 RNAMLY-DALKAMKFADFSVW--SEARFSGMVKTALTLAVTTTLKELT 168 + ML+ + ++ D S + R ++K+ L+LA+ L Sbjct: 141 KMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNALN 188 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 D++E L + + F + + + + ++F D+ V+YAV+PLL++ GPL + Sbjct: 12 DIVETLSEAETPYDFFTASFDLFEDAVDILIQNVF-RKDDYAVKYAVEPLLSRDGPLAHL 70 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAM 127 V ++L+Y LG + + Y DI F ++ + E+ F ++ I +N+I A Sbjct: 71 PVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEF---LSLALIERLNAIRAVAK 127 Query: 128 LYDALKAMKFADFSVWSEARF---------SGMVKTALTLAVTTTLKEL 167 + D + + + ++K++L LA+T +KEL Sbjct: 128 ILPP----NLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKEL 172 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 L+ED + E+L+ ++ FM I + + + +F D +V+ + L GP Sbjct: 2 LSEDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTDF-VVQSVIDSLFTNDGP 60 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+++ LG + L++D+ F QF LN+ ++ F D++ F+ + + Sbjct: 61 LGDLSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTFDDEIVLTFLQKLTLLM 120 Query: 124 -RNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKEL 167 ++A+ ++ L K + R ++++ L L + ++L Sbjct: 121 DKSALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQL 165 >UniRef50_C5Q3Q3 Putative uncharacterized protein n=1 Tax=Staphylococcus aureus subsp. aureus TCH130 RepID=C5Q3Q3_STAAU Length = 44 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/26 (88%), Positives = 23/26 (88%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTA 26 MATLT DDVLEQLDAQDNLFSFMK Sbjct: 1 MATLTVDDVLEQLDAQDNLFSFMKNC 26 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 11/169 (6%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E ++LE L + + A+ + + + S+F D+ V+Y V PLL GPL Sbjct: 26 ETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIF-HKDDYAVKYVVDPLLTNDGPLG 84 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFAD-DMTWDF-----ISNV 119 DI V +L+ LG + K ++ DI F + Q+ F + D+ ++ I + Sbjct: 85 DILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQKM 144 Query: 120 NSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELT 168 I + + D L + F R VK+ + LA+T ++ L Sbjct: 145 MPIEYDESMTDGLDVVMLEMFL----ERHYQRVKSTIILAITELVETLC 189 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 7/167 (4%) Query: 7 DDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDD 66 D+ +EQL +L F + Q I + + +F D + + V L GPL + Sbjct: 5 DNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTDFAL-KSVVDSLFEHQGPLAE 63 Query: 67 IDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNA 126 + V L+L+ LG + ++ DI+ F + L+++ E F+ F +++ I + Sbjct: 64 LTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHIDLSP 123 Query: 127 MLYDALK---AMKFADFSVW--SEARFSGMVKTALTLAVTTTLKELT 168 + D LK +++ D ++ + R +++++L LA+T ++L Sbjct: 124 V-ADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLN 169 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 202 4e-51 UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 196 3e-49 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 184 1e-45 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 184 1e-45 UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 181 9e-45 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 179 3e-44 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 166 2e-40 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 153 2e-36 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 152 5e-36 Sequences not found previously or not previously below threshold: UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 113 2e-24 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 110 2e-23 UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkh... 49 7e-05 UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodo... 48 1e-04 UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Siderox... 47 2e-04 UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comam... 47 3e-04 UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaero... 45 7e-04 UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escheri... 41 0.012 UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limno... 41 0.019 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 202 bits (513), Expect = 4e-51, Method: Composition-based stats. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ Sbjct: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN Sbjct: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 Query: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP Sbjct: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 196 bits (498), Expect = 3e-49, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 M T ED+VLE+L+ QD F TIL + + + F +E V+YA++PLL Q Sbjct: 1 MTTHQEDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAF-RQEEYAVKYAIEPLLNQ 59 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPL ++V L+LI+ALG + Y D+ + + +L + F+D D ++ ++ Sbjct: 60 SGPLGQLEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLH 119 Query: 121 SITRNAMLYDALKAMKFA-DFSVWSEARFSGMVKTALTLAVTTTLKEL 167 +++ M+ A + F R +V++AL LAV + EL Sbjct: 120 GVSQGGMMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTEL 167 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + S + A +L + + + +F D+ V+YAV+PLL SGPL Sbjct: 27 ENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVF-RKDDYAVKYAVEPLLDGSGPLG 85 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG + + Y D LN F DD ++ + Sbjct: 86 DLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFTDDEILGPFGELHCVVA- 144 Query: 126 AMLYDALKAMKFADFS--VWSEARFSGMVKTALTLAVTTTLKELT 168 L A A++ +D + R+ +V++ + L++T L ++ Sbjct: 145 --LPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRIS 187 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 184 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 ++T ED V E+L +N F +L + Q + F +E V+YA++PLL Sbjct: 6 VSTYQEDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAF-RQEEYAVKYAIEPLLNG 64 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 GPL D+ + L+LI+ALG + + DI F + +L F ++ D ++ ++ Sbjct: 65 KGPLADLHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLH 124 Query: 121 SITRNAMLYDALKAMKFAD--FSVWSEARFSGMVKTALTLAVTTTLKELT 168 S+ +N + + AD R ++++AL LAV+ L EL+ Sbjct: 125 SL-QNISMMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELS 173 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 181 bits (459), Expect = 9e-45, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVF-RKDDYAVKYAVEPLLDGDGPLG 87 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG +++ Y D LN F DD ++ + Sbjct: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAA- 146 Query: 126 AMLYDALKAMKFADFSV--WSEARFSGMVKTALTLAVTTTLKELT 168 + AD S+ R+ V++ + L++T + +++ Sbjct: 147 ---LPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKIS 188 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 179 bits (454), Expect = 3e-44, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 4/168 (2%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 + E D+LE+L+ + F T +L + I + +F D V+ V+PLL +GP Sbjct: 22 INESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIF-RKDNFAVKSVVEPLLHDTGP 80 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+L++ LG + ++ DI H + + LN F D I +N + Sbjct: 81 LGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDPQILAPIKALNLVK 140 Query: 124 RNAMLY-DALKAMKFADFSVW--SEARFSGMVKTALTLAVTTTLKELT 168 + ML+ + ++ D S + R ++K+ L+LA+ L Sbjct: 141 KMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNALN 188 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 L+ED + E+L+ ++ FM I + + + +F D +V+ + L GP Sbjct: 2 LSEDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTD-FVVQSVIDSLFTNDGP 60 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+++ LG + L++D+ F QF LN+ ++ F D++ F+ + + Sbjct: 61 LGDLSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTFDDEIVLTFLQKLTLLM 120 Query: 124 -RNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKEL 167 ++A+ ++ L K + R ++++ L L + ++L Sbjct: 121 DKSALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQL 165 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 9/165 (5%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 D++E L + + F + + + + ++F D+ V+YAV+PLL++ GPL + Sbjct: 12 DIVETLSEAETPYDFFTASFDLFEDAVDILIQNVF-RKDDYAVKYAVEPLLSRDGPLAHL 70 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAM 127 V ++L+Y LG + + Y DI F ++ + E+ F ++ I +N+I A Sbjct: 71 PVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEF---LSLALIERLNAIRAVAK 127 Query: 128 LYDA---LKAMKFADFS--VWSEARFSGMVKTALTLAVTTTLKEL 167 + ++ + + ++K++L LA+T +KEL Sbjct: 128 ILPPNLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKEL 172 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 152 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 ++LE ++ D+ SF+ ++ ++ ++ LP++FV DE ++EYAV+PLL + GPL Sbjct: 6 ELLETVEECDDATSFLCASNKLINLKLKALLPNIFV-QDELVMEYAVEPLLKEDGPLVTT 64 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISN--VNSITRN 125 DV +L++A+GK+ YADI ++Q Y Q + F DDM +DFISN + S ++ Sbjct: 65 DVVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMIYDFISNQAILSTQQD 124 Query: 126 AMLYDALKAMKFADFSVWSEARFSGMVKTALTLAV 160 + +++ +KF+ F V+S+ R+ ++KT L L+ Sbjct: 125 SFYLESINQLKFSSFEVFSQMRYESLIKTVLKLSC 159 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 5 TEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPL 64 E ++LE L + + A+ + + + S+F D+ V+Y V PLL GPL Sbjct: 25 NETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIF-HKDDYAVKYVVDPLLTNDGPL 83 Query: 65 DDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITR 124 DI V +L+ LG + K ++ DI F + Q+ F + ++ +++I + Sbjct: 84 GDILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQK 143 Query: 125 NAMLYDALKAMKFADFSVWSEA---RFSGMVKTALTLAVTTTLKEL 167 M + ++M V E R VK+ + LA+T ++ L Sbjct: 144 M-MPIEYDESMTDGLDVVMLEMFLERHYQRVKSTIILAITELVETL 188 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 7 DDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDD 66 D+ +EQL +L F + Q I + + +F D ++ V L GPL + Sbjct: 5 DNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTD-FALKSVVDSLFEHQGPLAE 63 Query: 67 IDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSI---- 122 + V L+L+ LG + ++ DI+ F + L+++ E F+ F +++ I Sbjct: 64 LTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHIDLSP 123 Query: 123 TRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELT 168 + + + + K + + R +++++L LA+T ++L Sbjct: 124 VADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLN 169 >UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAV0_9BURK Length = 180 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%) Query: 53 AVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMT 112 + L GPL + + YA G +DK LY +I + +Y F D Sbjct: 73 VAEKLFGAMGPLATFSQRIAVAYAFGFIDKELYRNIELIRKIRNYFAHHPFEGSFESDEV 132 Query: 113 WD 114 Sbjct: 133 KG 134 >UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodopirellula baltica RepID=Q7UIL1_RHOBA Length = 316 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 5/104 (4%) Query: 16 QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIY 75 + + L + + L ++FVD+ + V L + SG L + Y Sbjct: 147 SETDRGCALMVASFLDHKLGKLLEAMFVDDSK-----VVSELFSHSGTLGTFSSRIDTAY 201 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 ALG + DI + + T F DD + Sbjct: 202 ALGLIGPNTRRDINLIRKIRNEFGHSHYTLKFTDDRIRSRCKEL 245 >UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3A3_9PROT Length = 183 Score = 47.3 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 30 LLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADIT 89 L + L V D A LL ++ PL +++ ++L + ++ D+ Sbjct: 38 LDHCLEILLLRALVKCD------ATDNLLGETNPLGTFSAKIKIAFSLNLIPLVIFQDLE 91 Query: 90 HFSQFWHYLNEQDETPGFADDMTWDFISNV 119 + + Q F+ D + Sbjct: 92 VIRKIRNAFAHQLNGLSFSCDPIKSLARGL 121 >UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY67_COMTE Length = 166 Score = 46.9 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 15 AQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLI 74 + +L + + L S +D E +++ L S PL ++ Sbjct: 17 QAETDRGAALVGAALLDKQLHDLLRSHLLDKKE-----SLELLEGGSAPLGTFSARIKAS 71 Query: 75 YALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAML--YDAL 132 Y LG + + ++ + + Q F ++ N+ +A + Sbjct: 72 YCLGLITDLEHRELQLIRKVRNEFAHQTHGLTFQNEKIASLCGNLLDRMPDAKENGIERP 131 Query: 133 KAMKFADFSVWSEA 146 KF D +++ Sbjct: 132 IRAKFIDSVLFTSL 145 >UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8J6_SPHTD Length = 247 Score = 45.4 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Query: 17 DNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYA 76 ++ A L + + L FVD+ + A K +L +G L + L Y Sbjct: 71 ESDRGCALMAAAYLDTALMELLQRFFVDD-----QKASKHILDGTGVLSSFAARIELAYL 125 Query: 77 LGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 +G + L D+ + + F D +++ Sbjct: 126 IGLISPKLREDLNRIRRIRNEFAHTSSEVRFDDPEIAKLCNDL 168 >UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escherichia coli O26:H11 str. 11368 RepID=C8TP86_ECO26 Length = 279 Score = 41.2 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 34/102 (33%), Gaps = 5/102 (4%) Query: 18 NLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYAL 77 + + + + + L + + D + + ++ + PL ++ ++L Sbjct: 21 DERGLILSLAAFSEDALGKMLLTFML--DNKASKELIEGF---NAPLGTFSSRIKACFSL 75 Query: 78 GKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 G + + Y D+ + + + E D I + Sbjct: 76 GLITEGQYKDLELLRKIRNKFSHSWENISIEDQDISQQIKAL 117 >UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limnobacter sp. MED105 RepID=A6GLI2_9BURK Length = 181 Score = 40.8 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 19/60 (31%) Query: 53 AVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMT 112 + L GPL + L A G + K Y D+T + ++ F Sbjct: 67 VAEELFQSMGPLSSFSQRITLARAFGFISKQDYEDLTLIRKIRNHFAHHPLDTTFGIQEV 126 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 188 6e-47 UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 187 1e-46 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 177 1e-43 UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 174 9e-43 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 174 1e-42 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 172 4e-42 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 159 3e-38 UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 155 5e-37 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 150 1e-35 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 149 2e-35 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 142 5e-33 UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comam... 123 3e-27 UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodo... 113 3e-24 UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaero... 107 2e-22 UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Siderox... 105 8e-22 UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkh... 98 1e-19 Sequences not found previously or not previously below threshold: UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clost... 84 3e-15 UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alter... 80 4e-14 UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limno... 77 2e-13 UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereu... 74 1e-12 UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsie... 68 1e-10 UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escheri... 67 3e-10 UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID... 63 4e-09 UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewane... 60 3e-08 UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Plancto... 59 8e-08 UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Ocean... 58 1e-07 UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkhol... 56 4e-07 UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryan... 52 7e-06 UniRef50_Q89U28 Bll1591 protein n=1 Tax=Bradyrhizobium japonicum... 51 1e-05 UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polarom... 50 4e-05 UniRef50_Q31PC2 Putative uncharacterized protein n=2 Tax=Synecho... 47 2e-04 UniRef50_C6E2D1 Putative uncharacterized protein n=1 Tax=Geobact... 43 0.005 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 188 bits (478), Expect = 6e-47, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 2/168 (1%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 M T ED+VLE+L+ QD F TIL + + + F +E V+YA++PLL Q Sbjct: 1 MTTHQEDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAF-RQEEYAVKYAIEPLLNQ 59 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPL ++V L+LI+ALG + Y D+ + + +L + F+D D ++ ++ Sbjct: 60 SGPLGQLEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLH 119 Query: 121 SITRNAMLYDALKAMKFA-DFSVWSEARFSGMVKTALTLAVTTTLKEL 167 +++ M+ A + F R +V++AL LAV + EL Sbjct: 120 GVSQGGMMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTEL 167 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 187 bits (475), Expect = 1e-46, Method: Composition-based stats. Identities = 169/169 (100%), Positives = 169/169 (100%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ Sbjct: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN Sbjct: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 Query: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP Sbjct: 121 SITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 177 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + S + A +L + + + +F D+ V+YAV+PLL SGPL Sbjct: 27 ENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVF-RKDDYAVKYAVEPLLDGSGPLG 85 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG + + Y D LN F DD ++ + Sbjct: 86 DLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFTDDEILGPFGELHCVVA- 144 Query: 126 AMLYDALKAMKFADFS--VWSEARFSGMVKTALTLAVTTTLKELT 168 L A A++ +D + R+ +V++ + L++T L ++ Sbjct: 145 --LPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRIS 187 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVF-RKDDYAVKYAVEPLLDGDGPLG 87 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 D+ V L+LIY LG +++ Y D LN F DD ++ + Sbjct: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA-- 145 Query: 126 AMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELT 168 A+ + R+ V++ + L++T + +++ Sbjct: 146 ALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKIS 188 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 + E D+LE+L+ + F T +L + I + +F D V+ V+PLL +GP Sbjct: 22 INESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIF-RKDNFAVKSVVEPLLHDTGP 80 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+L++ LG + ++ DI H + + LN F D I +N + Sbjct: 81 LGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDPQILAPIKALNLVK 140 Query: 124 RNAML-YDALKAMKFAD--FSVWSEARFSGMVKTALTLAVTTTLKELT 168 + ML + ++ D F R ++K+ L+LA+ L Sbjct: 141 KMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNALN 188 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 172 bits (436), Expect = 4e-42, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ 60 ++T ED V E+L +N F +L + Q + F +E V+YA++PLL Sbjct: 6 VSTYQEDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAF-RQEEYAVKYAIEPLLNG 64 Query: 61 SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 GPL D+ + L+LI+ALG + + DI F + +L F ++ D ++ ++ Sbjct: 65 KGPLADLHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLH 124 Query: 121 SITRNAMLYDALKAMKFAD--FSVWSEARFSGMVKTALTLAVTTTLKELT 168 S+ +N + + AD R ++++AL LAV+ L EL+ Sbjct: 125 SL-QNISMMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELS 173 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 2/165 (1%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 L+ED + E+L+ ++ FM I + + + +F D +V+ + L GP Sbjct: 2 LSEDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTD-FVVQSVIDSLFTNDGP 60 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSIT 123 L D+ V L+++ LG + L++D+ F QF LN+ ++ F D++ F+ + + Sbjct: 61 LGDLSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTFDDEIVLTFLQKLTLLM 120 Query: 124 -RNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKEL 167 ++A+ ++ L K + R ++++ L L + ++L Sbjct: 121 DKSALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQL 165 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 5 TEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPL 64 E ++LE L + + A+ + + + S+F D+ V+Y V PLL GPL Sbjct: 25 NETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIF-HKDDYAVKYVVDPLLTNDGPL 83 Query: 65 DDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITR 124 DI V +L+ LG + K ++ DI F + Q+ F + ++ +++I + Sbjct: 84 GDILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQK 143 Query: 125 NAMLYDALKAMKFADFSVWSEA---RFSGMVKTALTLAVTTTLKEL 167 M + ++M V E R VK+ + LA+T ++ L Sbjct: 144 M-MPIEYDESMTDGLDVVMLEMFLERHYQRVKSTIILAITELVETL 188 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 5/166 (3%) Query: 7 DDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDD 66 D+ +EQL +L F + Q I + + +F D ++ V L GPL + Sbjct: 5 DNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTD-FALKSVVDSLFEHQGPLAE 63 Query: 67 IDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSI---- 122 + V L+L+ LG + ++ DI+ F + L+++ E F+ F +++ I Sbjct: 64 LTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHIDLSP 123 Query: 123 TRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAVTTTLKELT 168 + + + + K + + R +++++L LA+T ++L Sbjct: 124 VADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLN 169 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 9/165 (5%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 D++E L + + F + + + + ++F D+ V+YAV+PLL++ GPL + Sbjct: 12 DIVETLSEAETPYDFFTASFDLFEDAVDILIQNVF-RKDDYAVKYAVEPLLSRDGPLAHL 70 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAM 127 V ++L+Y LG + + Y DI F ++ + E+ F ++ I +N+I A Sbjct: 71 PVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEF---LSLALIERLNAIRAVAK 127 Query: 128 LYDA---LKAMKFADFS--VWSEARFSGMVKTALTLAVTTTLKEL 167 + ++ + + ++K++L LA+T +KEL Sbjct: 128 ILPPNLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKEL 172 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 3/155 (1%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDI 67 ++LE ++ D+ SF+ ++ ++ ++ LP++FV DE ++EYAV+PLL + GPL Sbjct: 6 ELLETVEECDDATSFLCASNKLINLKLKALLPNIFV-QDELVMEYAVEPLLKEDGPLVTT 64 Query: 68 DVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISN--VNSITRN 125 DV +L++A+GK+ YADI ++Q Y Q + F DDM +DFISN + S ++ Sbjct: 65 DVVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMIYDFISNQAILSTQQD 124 Query: 126 AMLYDALKAMKFADFSVWSEARFSGMVKTALTLAV 160 + +++ +KF+ F V+S+ R+ ++KT L L+ Sbjct: 125 SFYLESINQLKFSSFEVFSQMRYESLIKTVLKLSC 159 >UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY67_COMTE Length = 166 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 15 AQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLI 74 + +L + + L S +D E +++ L S PL ++ Sbjct: 17 QAETDRGAALVGAALLDKQLHDLLRSHLLDKKE-----SLELLEGGSAPLGTFSARIKAS 71 Query: 75 YALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAML--YDAL 132 Y LG + + ++ + + Q F ++ N+ +A + Sbjct: 72 YCLGLITDLEHRELQLIRKVRNEFAHQTHGLTFQNEKIASLCGNLLDRMPDAKENGIERP 131 Query: 133 KAMKFADFSVWSEA 146 KF D +++ Sbjct: 132 IRAKFIDSVLFTSL 145 >UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodopirellula baltica RepID=Q7UIL1_RHOBA Length = 316 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 5/106 (4%) Query: 16 QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIY 75 + + L + + L ++FVD+ + V L + SG L + Y Sbjct: 147 SETDRGCALMVASFLDHKLGKLLEAMFVDDSK-----VVSELFSHSGTLGTFSSRIDTAY 201 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNS 121 ALG + DI + + T F DD + Sbjct: 202 ALGLIGPNTRRDINLIRKIRNEFGHSHYTLKFTDDRIRSRCKELFH 247 >UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8J6_SPHTD Length = 247 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 6/122 (4%) Query: 17 DNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYA 76 ++ A L + + L FVD+ + A K +L +G L + L Y Sbjct: 71 ESDRGCALMAAAYLDTALMELLQRFFVDD-----QKASKHILDGTGVLSSFAARIELAYL 125 Query: 77 LGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAMK 136 +G + L D+ + + F D +++ K Sbjct: 126 IGLISPKLREDLNRIRRIRNEFAHTSSEVRFDDPEIAKLCNDLYH-DPLVNQLPRSPRAK 184 Query: 137 FA 138 F Sbjct: 185 FI 186 >UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3A3_9PROT Length = 183 Score = 105 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 6/102 (5%) Query: 18 NLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYAL 77 + S L + L V D A LL ++ PL +++ ++L Sbjct: 26 DDRSCALLGAAYLDHCLEILLLRALVKCD------ATDNLLGETNPLGTFSAKIKIAFSL 79 Query: 78 GKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 + ++ D+ + + Q F+ D + Sbjct: 80 NLIPLVIFQDLEVIRKIRNAFAHQLNGLSFSCDPIKSLARGL 121 >UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAV0_9BURK Length = 180 Score = 98.2 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 4 LTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP 63 +D++ + ++ A + L + +L S VD + L GP Sbjct: 31 HQINDLIGAFNK-ESDRGAAILAGSFLEHYLGVYLQSKTVD------AKVAEKLFGAMGP 83 Query: 64 LDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 L + + YA G +DK LY +I + +Y F D + +++ Sbjct: 84 LATFSQRIAVAYAFGFIDKELYRNIELIRKIRNYFAHHPFEGSFESDEVKGKVLSLS 140 >UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clostridium botulinum B1 str. Okra RepID=B1IMR2_CLOBK Length = 231 Score = 83.6 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 17 DNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYA 76 + + + L + + + + S V++ V + + +G L + + Y Sbjct: 57 ETDRGCALISASFLDKQLEELIKSYLVNDTN-----IVNNIFSSNGALGTFSSRIDMAYL 111 Query: 77 LGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 LG + K D+ + + E F + + Sbjct: 112 LGLIGKKARRDLHIIRKIRNEFGHNPEPISFDTQSIQNRCVEL 154 >UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3I7_9GAMM Length = 172 Score = 79.7 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 6/137 (4%) Query: 3 TLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSG 62 T+ + L + + ++ A +L + L F DN + + Sbjct: 7 TMELSEFLSEFNK-ESDRGAALNAAAVLDDWLGNILGEFFADN-----RSGKDLISGFNA 60 Query: 63 PLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSI 122 PL + +ALG + + +IT + + F D ++ + Sbjct: 61 PLGTFAAKVTAAHALGLIQDNEFREITLIRKIRNEFGHSWRGVSFESDKVAHLVNQLPWC 120 Query: 123 TRNAMLYDALKAMKFAD 139 + +F Sbjct: 121 GPPEFEAKSTPRARFNS 137 >UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limnobacter sp. MED105 RepID=A6GLI2_9BURK Length = 181 Score = 77.4 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 6/106 (5%) Query: 16 QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIY 75 + A + + +L SL VD+ + L GPL + L Sbjct: 36 GETDRGAAVIAAGFVDNYLGLYLRSLAVDSK------VAEELFQSMGPLSSFSQRITLAR 89 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNS 121 A G + K Y D+T + ++ F ++ Sbjct: 90 AFGFISKQDYEDLTLIRKIRNHFAHHPLDTTFGIQEVSKLSIKLSD 135 >UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereus group RepID=C2ML91_BACCE Length = 318 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 5/129 (3%) Query: 10 LEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDV 69 E+ + + +I+ + + L S + +D K L +G L D Sbjct: 28 FEKELENSSDRGMVLVCGSIIDRLLHDLLKSFLIKSDN-----VEKDLFKSNGVLATFDA 82 Query: 70 ALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLY 129 +++ Y LG + K +IT+ + + Q F + + N + + Sbjct: 83 KIKMAYYLGLISKKEQQNITYLQRIRNKFAHQFLGISFESNDIANICGNFEIPKNSFVPP 142 Query: 130 DALKAMKFA 138 K Sbjct: 143 LIPFPDKET 151 >UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsiella variicola At-22 RepID=D0YDH1_KLEVA Length = 181 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Query: 16 QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ-SGPLDDIDVALRLI 74 ++ + A +++ +G+ + + S + + L + PL ++ + + Sbjct: 24 PESDRGCVLVASSMIEEGLLELISSFLLPPTN-----SKDELFHGPAAPLSSLESRIAMA 78 Query: 75 YALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKA 134 Y LG + K + + F + + + ET F + ++ + + Y Sbjct: 79 YRLGLITKSVAKSLGVFRKLRNEFAHRIETVNFDSPSALNRLNEIYRLFPELSDYLDDIG 138 Query: 135 MKFADFSVWSEARFSGMVKTALTLAVTTTLKELTP 169 + + + + +F M ++ A+ E+ P Sbjct: 139 KRTDNHPLPTRLKFI-MFFSSNIAAIKAVKTEVVP 172 >UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escherichia coli O26:H11 str. 11368 RepID=C8TP86_ECO26 Length = 279 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 18 NLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYAL 77 + + + + + L + +DN + + + + + PL ++ ++L Sbjct: 21 DERGLILSLAAFSEDALGKMLLTFMLDN-----KASKELIEGFNAPLGTFSSRIKACFSL 75 Query: 78 GKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVN 120 G + + Y D+ + + + E D I ++ Sbjct: 76 GLITEGQYKDLELLRKIRNKFSHSWENISIEDQDISQQIKALS 118 >UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VKY8_ALCBS Length = 190 Score = 63.1 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 43/121 (35%), Gaps = 7/121 (5%) Query: 7 DDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQS-GPLD 65 D E + ++ + A +IL + + + L + + + LL + PL Sbjct: 14 SDYYELISE-ESDRGAVIVAASILDESLGEILKTFLLRPSTKK-----DNLLEGAYAPLG 67 Query: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRN 125 + L + LG + K + + F + + + D+ ++ + + T + Sbjct: 68 SFSAKIELSFRLGIIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEILNTTPD 127 Query: 126 A 126 Sbjct: 128 I 128 >UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewanella baltica OS195 RepID=A9L6C3_SHEB9 Length = 189 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 13/109 (11%), Positives = 37/109 (33%), Gaps = 6/109 (5%) Query: 17 DNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLA-QSGPLDDIDVALRLIY 75 ++ + A +++ + L + + + ++ L P + L Y Sbjct: 19 ESDRGSVLVAVSMIEDVLGCLLKARLLPSLDKN-----DELFDIGYAPFGTFSAKIDLAY 73 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITR 124 +G +++ + + GF+ T D I ++ S+ + Sbjct: 74 RVGCINQHTRQSCHILRKIRNDFAHATNIKGFSHSCTQDRIKDLFSLNK 122 >UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG94_9PLAN Length = 220 Score = 58.5 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 14/105 (13%) Query: 10 LEQLDAQ--------DNLFSFMKTAHTILLQGIRQFLPSLFV------DNDEEIVEYAVK 55 LE L+ + ++ + A + + + L +F +D+ + Sbjct: 16 LEDLNEEFRYEIVLNESDRGAVLVASAFVEEALEHLLRQVFTVKSCNTSDDKFASQLNRL 75 Query: 56 PLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNE 100 PL + L Y LG +D + + Sbjct: 76 TKSGIDAPLGSFSSRITLAYVLGIIDVDYLTALEALRNLRNSYAH 120 >UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DSJ7_9RHOB Length = 178 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 7/120 (5%) Query: 2 ATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQS 61 +E + + Q++ L + L + E + LL S Sbjct: 12 TLYSEKENFWKSTEQESDRGLALVCMAYLEGKLEDCLFEYMDRSPE------ARELLKPS 65 Query: 62 GPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNS 121 GPL + + + L + + + ++ + F D + ++ S Sbjct: 66 GPLGTMVARINMCICLKIIHRNTGRMLRVAAKIRNEFAHT-FQATFDDSPVKELSISLLS 124 >UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkholderia phage KS9 RepID=C7BGG4_9CAUD Length = 191 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 17 DNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYA 76 ++ S + + + + + + A L PL + L + Sbjct: 27 ESERSAVILGGALADEELLALMLKVMP-----SPNKAEDRLFEPERPLGSFSSRITLAHR 81 Query: 77 LGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 +G +D + ++ + E DD D ++N+ Sbjct: 82 IGLIDDDFARGLNWVRDLRNHFAHRVEHAKLTDDAYRDRVTNI 124 >UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMA4_9FIRM Length = 131 Score = 52.0 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 6/92 (6%), Positives = 26/92 (28%), Gaps = 4/92 (4%) Query: 15 AQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLI 74 + ++ S + L + + + ++ + + L + L Sbjct: 34 QEKSMRSTIIICAATLDTQLEKLIKNILLQEKNTDD----DIFEGGNATLSTFSAKITLA 89 Query: 75 YALGKMDKWLYADITHFSQFWHYLNEQDETPG 106 Y +G + + + + + + + Sbjct: 90 YYMGLISEHERKTLDCIRKIRNKAAHEIDILS 121 >UniRef50_Q89U28 Bll1591 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89U28_BRAJA Length = 199 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 9/115 (7%) Query: 8 DVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGP-LDD 66 +++ L ++ L + + L A L A S P L Sbjct: 20 ELIRTL-GVESERGMAVLVGAELDRALELVL------CAYLAPGKARTELFAGSSPPLGT 72 Query: 67 IDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNS 121 + L AL +++ + + + FA+ ++ + S Sbjct: 73 FSGKINLCRALHLINEDECTALHTIRKIRNEFAHDP-DASFANAQIRSWVDILRS 126 >UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTT5_POLNA Length = 265 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 7/98 (7%) Query: 6 EDDVLEQLDA---QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSG 62 E + EQ+ + A + + +F + V L++ G Sbjct: 68 EVTLFEQIAGLVVSEEARVIPVIAAAYADDRLEE----MFKREIPDGVPGGRSALMSGFG 123 Query: 63 PLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNE 100 PL + L++ +A G + K L + H + + L+ Sbjct: 124 PLARLSQRLQMAFAFGWLSKDLLIEFDHIRKIRNDLSH 161 >UniRef50_Q31PC2 Putative uncharacterized protein n=2 Tax=Synechococcus elongatus RepID=Q31PC2_SYNE7 Length = 182 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 5/152 (3%) Query: 16 QDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIY 75 + + L + + L S+ +E L L + L Sbjct: 23 AERGRGVVLVGAARLDLALERLLQSVMAPLGDEE-----DVLFTPDRSLGSFAAKITLAA 77 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSITRNAMLYDALKAM 135 LG +D + + + ++ ++ R L+ L+ + Sbjct: 78 RLGLLDPTVEKALHGIRAVRNDFAHSASDTNLSEARHQKRLAKSYQAARRNPLWLPLEQV 137 Query: 136 KFADFSVWSEARFSGMVKTALTLAVTTTLKEL 167 + ++ + A L Sbjct: 138 FDEHNVAIGTSDREFILLVTILAAFIDACTSL 169 >UniRef50_C6E2D1 Putative uncharacterized protein n=1 Tax=Geobacter sp. M21 RepID=C6E2D1_GEOSM Length = 199 Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 6/104 (5%) Query: 18 NLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSG--PLDDIDVALRLIY 75 A +L G+ Q L +D E E+ L G P ++L Sbjct: 27 TRRELAIVAAGVLDLGLAQLLSMRLAGSDREREEFLG---LNGDGRAPAGSFGARIQLGV 83 Query: 76 ALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNV 119 G + + + + F S + Sbjct: 84 LTGTITSDDADILRIIKNIRNCFAHRVR-VDFTSPDILPLTSKL 126 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.135 0.310 Lambda K H 0.267 0.0413 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 752,215,317 Number of Sequences: 3077464 Number of extensions: 25054059 Number of successful extensions: 71620 Number of sequences better than 1.0e-01: 35 Number of HSP's better than 0.1 without gapping: 61 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 71499 Number of HSP's gapped (non-prelim): 69 length of query: 169 length of database: 1,040,396,356 effective HSP length: 119 effective length of query: 50 effective length of database: 674,178,140 effective search space: 33708907000 effective search space used: 33708907000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.5 bits)