 |
| Job Description | P00892 | | Confidence | 84.11% | Date | Thu Jan 5 10:57:00 GMT 2012 |
| Rank | 138 | Aligned Residues | 68 |
| % Identity | 15% | Template | c2iy3A_ |
| PDB info |
PDB header:rna-binding | Chain: A: PDB Molecule:signal recognition particle protein ffh; |
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
|
| Resolution | 16.00 Å |
|
 |
|   |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | |
|
|
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
| Query Sequence |   |
E | V | E | Q | A | R | Q | M | L | A | K | A | Q | K | P | M | L | Y | V | G | G | G | V | G | M | A | Q | A | V | P | A | L | R | E | F | L | A | A | T | K | M | P | A | T | C | T | L | K | G | L | G | A | V | E | A | D | Y | P | Y | Y | L | G | M | L | G | M | H | G | T | K | A | A | N | F | A | V | Q | . |
. |
. |
| Query Conservation |   |
  |
|   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|   |
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   | . | . | . |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . |
| Template Conservation |   |
|   |
|
|
|
|   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|
|
|   |
|   |
|
|   |
|
|
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |
|   |   |
|   |
| Template Sequence |   |
T | A | A | K | L | A | L | Y | Y | K | G | K | G | R | R | P | L | L | V | A | A | D | T | Q | R | P | A | A | R | E | Q | L | R | L | L | G | E | K | V | G | V | P | V | L | E | V | M | D | G | E | S | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | S | I | R | R | R | V | E | E | K | A | R |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
| T | T |
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
114 | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 170 | . | . | . | . | . | . | . |
|   |
|   |   |
|
|
262 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
. | . |
|
|
|  |  |  |  |
| Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
| Query Sequence |   |
. |
. |
E | C | D | L | L | I | A |
| Query Conservation |   |
. | . |   |
|
|   |
|
|   |
| Alig confidence |   |
. | . |
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|
|
|
|
|
| Template Sequence |   |
L | E | A | R | D | L | I | L | V |
| Template Known Secondary structure |   |
 |  | T |
| S |  |  |  |  |
| Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|   |   |
178 | . | 180 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|