Phyre 2 alignment of P0AEH1 with c2kl1A_

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Job Description | P0AEH1
Confidence | 99.30% | Date | Thu Jan 5 11:23:20 GMT 2012
Rank | 17 | Aligned Residues | 85
% Identity | 28% | Template | c2kl1A_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:ylbl protein; | PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . |  | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | P | Q | I | E | P | V | L | E | N | V | Q | P | N | S | A | A | S | K | A | G | L | Q | A | G | D | R | I | V | K | V | D | G | Q | P | L | T | Q | W | V | T | F | V | M | L | V | R | D | . | N | P | G | K | S | L | A | L | E | I | E | R | Q | G | S | P | L | S | L | T | L | I | P | E | S | K | P | G | N | G | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | E | A | K | G | V | Y | V | M | S | V | L | P | N | M | P | A | A | . | G | R | L | E | A | G | D | R | I | A | A | I | D | G | Q | P | I | N | T | S | E | Q | I | V | S | Y | V | R | E | K | Q | A | G | D | R | V | R | V | T | F | I | R | D | R | K | Q | H | E | A | E | L | V | L | K | P | F | P | H | H | P | N
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T | B | . | T | T | B |  | T | T |  |  |  |  |  |  | T | T | B |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  | T | T |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | B |  | S | S |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . |  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80
|  | 298 | . | 300 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |
Query Sequence |  | A | I | G | F | V | G | I | E
Query Conservation |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  | . |  |  |  |
Template Conservation |  |  |  |  | . |  |  |  |
Template Sequence |  | Q | I | G | . | L | G | V | T
Template Known Secondary structure |  |  | B |  | . |  | S |  |
Template Predicted Secondary structure |  |  |  |  | . |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |
|  | 81 | . | . |  | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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