Phyre 2 Results for P0AEH1

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AEH1
Date | Thu Jan 5 11:23:20 GMT 2012
Unique Job ID | c74bb06c30929ed5

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3rleA_
Top template information
PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208)
Confidence and coverage
Confidence: | 99.9% | Coverage: | 42%
187 residues ( 42% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
324 residues ( 72%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | S | F | L | W | D | L | A | S | F | I | V | A | L | G | V | L | I | T | V | H | E | F | G | H | F | W | V | A | R | R | C | G | V | R | V | E | R | F | S | I | G | F | G | K | A | L | W | R | R | T | D | K | L | G | T | E | Y | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | A | L | I | P | L | G | G | Y | V | K | M | L | D | E | R | A | E | P | V | V | P | E | L | R | H | H | A | F | N | N | K | S | V | G | Q | R | A | A | I | I | A | A | G | P | V | A | N | F | I | F | A | I | F | A | Y | W | L | V | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | I | I | G | V | P | G | V | R | P | V | V | G | E | I | A | A | N | S | I | A | A | E | A | Q | I | A | P | G | T | E | L | K | A | V | D | G | I | E | T | P | D | W | D | A | V | R | L | Q | L | V | D | K | I | G | D | E | S | T | T | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | V | A | P | F | G | S | D | Q | R | R | D | V | K | L | D | L | R | H | W | A | F | E | P | D | K | E | D | P | V | S | S | L | G | I | R | P | R | G | P | Q | I | E | P | V | L | E | N | V | Q | P | N | S | A | A | S | K | A | G | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | Q | A | G | D | R | I | V | K | V | D | G | Q | P | L | T | Q | W | V | T | F | V | M | L | V | R | D | N | P | G | K | S | L | A | L | E | I | E | R | Q | G | S | P | L | S | L | T | L | I | P | E | S | K | P | G | N | G | K | A | I | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | F | V | G | I | E | P | K | V | I | P | L | P | D | E | Y | K | V | V | R | Q | Y | G | P | F | N | A | I | V | E | A | T | D | K | T | W | Q | L | M | K | L | T | V | S | M | L | G | K | L | I | T | G | D | V | K | L | N | N | L | S | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | P | I | S | I | A | K | G | A | G | M | T | A | E | L | G | V | V | Y | Y | L | P | F | L | A | L | I | S | V | N | L | G | I | I | N | L | F | P | L | P | V | L | D | G | G | H | L | L | F | L | A | I | E | K | I | K | G | G | P | V | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450
Sequence |  | E | R | V | Q | D | F | C | Y | R | I | G | S | I | L | L | V | L | L | M | G | L | A | L | F | N | D | F | S | R | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3rleA_ |

### PDB 3rle chain A

Region: 130 - 402
Aligned: 187
Modelled: 188
Confidence: 99.9%
Identity: 19%
PDB header:membrane protein
Chain: A: PDB Molecule:golgi reassembly-stacking protein 2;
PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208)

Phyre2
2 |
| c3pv5B_ |

### PDB 3pv5 chain B

Region: 120 - 287
Aligned: 167
Modelled: 168
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:degq;
PDBTitle: structure of legionella fallonii degq (n189g/p190g variant)

Phyre2
3 |
| c4a8aI_ |

### PDB 4a8a chain I

Region: 129 - 287
Aligned: 153
Modelled: 159
Confidence: 99.8%
Identity: 18%
PDB header:hydrolase/hydrolase
Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq;
PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme

Phyre2
4 |
| c1p1dA_ |

### PDB 1p1d chain A

Region: 125 - 281
Aligned: 156
Modelled: 157
Confidence: 99.8%
Identity: 17%
PDB header:protein binding
Chain: A: PDB Molecule:glutamate receptor interacting protein;
PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins

Phyre2
5 |
| c2ka9A_ |

### PDB 2ka9 chain A

Region: 123 - 281
Aligned: 157
Modelled: 157
Confidence: 99.7%
Identity: 14%
PDB header:cell adhesion
Chain: A: PDB Molecule:disks large homolog 4;
PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide

Phyre2
6 |
| c2qt5A_ |

### PDB 2qt5 chain A

Region: 125 - 279
Aligned: 153
Modelled: 155
Confidence: 99.7%
Identity: 22%
PDB header:peptide binding protein
Chain: A: PDB Molecule:glutamate receptor-interacting protein 1;
PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide

Phyre2
7 |
| c3b4rB_ |

### PDB 3b4r chain B

Region: 8 - 444
Aligned: 148
Modelled: 148
Confidence: 99.7%
Identity: 43%
PDB header:hydrolase
Chain: B: PDB Molecule:putative zinc metalloprotease mj0392;
PDBTitle: site-2 protease from methanocaldococcus jannaschii

Phyre2
8 |
| c3r0hA_ |

### PDB 3r0h chain A

Region: 123 - 278
Aligned: 148
Modelled: 156
Confidence: 99.7%
Identity: 14%
PDB header:peptide binding protein
Chain: A: PDB Molecule:inactivation-no-after-potential d protein;
PDBTitle: structure of inad pdz45 in complex with ng2 peptide

Phyre2
9 |
| c1w9qB_ |

### PDB 1w9q chain B

Region: 129 - 276
Aligned: 132
Modelled: 133
Confidence: 99.6%
Identity: 14%
PDB header:cell adhesion
Chain: B: PDB Molecule:syntenin 1;
PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide

Phyre2
10 |
| c1u3bA_ |

### PDB 1u3b chain A

Region: 123 - 278
Aligned: 142
Modelled: 143
Confidence: 99.6%
Identity: 13%
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding,
PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains

Phyre2
11 |
| c2xkxB_ |

### PDB 2xkx chain B

Region: 127 - 281
Aligned: 153
Modelled: 155
Confidence: 99.5%
Identity: 14%
PDB header:structural protein
Chain: B: PDB Molecule:disks large homolog 4;
PDBTitle: single particle analysis of psd-95 in negative stain

Phyre2
12 |
| c2p3wB_ |

### PDB 2p3w chain B

Region: 219 - 300
Aligned: 80
Modelled: 82
Confidence: 99.4%
Identity: 31%
PDB header:protein binding
Chain: B: PDB Molecule:probable serine protease htra3;
PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)

Phyre2
13 |
| d1lcya1 |

### PDB 1lcy chain A domain 1

Region: 219 - 293
Aligned: 73
Modelled: 75
Confidence: 99.3%
Identity: 29%
Fold: PDZ domain-like
Superfamily: PDZ domain-like
Family: HtrA-like serine proteases

Phyre2
14 |
| c3i18A_ |

### PDB 3i18 chain A

Region: 220 - 304
Aligned: 84
Modelled: 85
Confidence: 99.3%
Identity: 14%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2051 protein;
PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b

Phyre2
15 |
| c1lcyA_ |

### PDB 1lcy chain A

Region: 219 - 293
Aligned: 73
Modelled: 75
Confidence: 99.3%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:htra2 serine protease;
PDBTitle: crystal structure of the mitochondrial serine protease htra2

Phyre2
16 |
| d2z9ia1 |

### PDB 2z9i chain A domain 1

Region: 212 - 292
Aligned: 81
Modelled: 81
Confidence: 99.3%
Identity: 26%
Fold: PDZ domain-like
Superfamily: PDZ domain-like
Family: HtrA-like serine proteases

Phyre2
17 |
| c2kl1A_ |

### PDB 2kl1 chain A

Region: 219 - 305
Aligned: 85
Modelled: 87
Confidence: 99.3%
Identity: 28%
PDB header:protein binding
Chain: A: PDB Molecule:ylbl protein;
PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c

Phyre2
18 |
| c2zpmA_ |

### PDB 2zpm chain A

Region: 224 - 308
Aligned: 80
Modelled: 85
Confidence: 99.3%
Identity: 89%
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of sigma e protease;
PDBTitle: crystal structure analysis of pdz domain b

Phyre2
19 |
| c3stjC_ |

### PDB 3stj chain C

Region: 219 - 292
Aligned: 74
Modelled: 74
Confidence: 99.3%
Identity: 28%
PDB header:hydrolase
Chain: C: PDB Molecule:protease degq;
PDBTitle: crystal structure of the protease + pdz1 domain of degq from2 escherichia coli

Phyre2
20 |
| c2joaA_ |

### PDB 2joa chain A

Region: 219 - 293
Aligned: 73
Modelled: 75
Confidence: 99.2%
Identity: 21%
PDB header:protein binding
Chain: A: PDB Molecule:serine protease htra1;
PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
130 |
131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |
157 |
158 |
159 |
160 |
161 |
162 |
163 |
164 |
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 |
175 |
176 |
177 |
178 |
179 |
180 |
181 |
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 |
200 |
201 |
202 |
203 |
204 |
205 |
206 |
207 |
208 |
209 |
210 |
211 |
212 |
213 |
214 |
215 |
216 |
217 |
218 |
219 |
220 |
221 |
222 |
223 |
224 |
225 |
226 |
227 |
228 |
229 |
230 |
231 |
232 |
233 |
234 |
235 |
236 |
237 |
238 |
239 |
240 |
241 |
242 |
243 |
244 |
245 |
246 |
247 |
248 |
249 |
250 |
251 |
252 |
253 |
254 |
255 |
256 |
257 |
258 |
259 |
260 |
261 |
262 |
263 |
264 |
265 |
266 |
267 |
268 |
269 |
270 |
271 |
272 |
273 |
274 |
275 |
276 |
277 |
278 |
279 |
280 |
281 |
282 |
283 |
284 |
285 |
286 |
287 |
288 |
289 |
290 |
291 |
292 |
293 |
294 |
295 |
296 |
297 |
298 |
299 |
300 |
301 |
302 |
303 |
304 |
305 |
306 |
307 |
308 |
309 |
310 |
311 |
312 |
313 |
314 |
315 |
316 |
317 |
318 |
319 |
320 |
321 |
322 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3rleA_ |
|  | 99.9 | 19 | PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208)
2 | c3pv5B_ |
|  | 99.9 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (n189g/p190g variant)
3 | c4a8aI_ |
|  | 99.8 | 18 | PDB header:hydrolase/hydrolase Chain: I: PDB Molecule:periplasmic ph-dependent serine endoprotease degq; PDBTitle: asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex2 with lysozyme
4 | c1p1dA_ |
|  | 99.8 | 17 | PDB header:protein binding Chain: A: PDB Molecule:glutamate receptor interacting protein; PDBTitle: structural insights into the inter-domain chaperoning of2 tandem pdz domains in glutamate receptor interacting3 proteins
5 | c2ka9A_ |
|  | 99.7 | 14 | PDB header:cell adhesion Chain: A: PDB Molecule:disks large homolog 4; PDBTitle: solution structure of psd-95 pdz12 complexed with cypin2 peptide
6 | c2qt5A_ |
|  | 99.7 | 22 | PDB header:peptide binding protein Chain: A: PDB Molecule:glutamate receptor-interacting protein 1; PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide
7 | c3b4rB_ |
|  | 99.7 | 43 | PDB header:hydrolase Chain: B: PDB Molecule:putative zinc metalloprotease mj0392; PDBTitle: site-2 protease from methanocaldococcus jannaschii
8 | c3r0hA_ |
|  | 99.7 | 14 | PDB header:peptide binding protein Chain: A: PDB Molecule:inactivation-no-after-potential d protein; PDBTitle: structure of inad pdz45 in complex with ng2 peptide
9 | c1w9qB_ |
|  | 99.6 | 14 | PDB header:cell adhesion Chain: B: PDB Molecule:syntenin 1; PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide
10 | c1u3bA_ |
|  | 99.6 | 13 | PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
11 | c2xkxB_ |
|  | 99.5 | 14 | PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain
12 | c2p3wB_ |
|  | 99.4 | 31 | PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)
13 | d1lcya1 |
|  | 99.3 | 29 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
14 | c3i18A_ |
|  | 99.3 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b
15 | c1lcyA_ |
|  | 99.3 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2
16 | d2z9ia1 |
|  | 99.3 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
17 | c2kl1A_ |
|  | 99.3 | 28 | PDB header:protein binding Chain: A: PDB Molecule:ylbl protein; PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c
18 | c2zpmA_ |
|  | 99.3 | 89 | PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b
19 | c3stjC_ |
|  | 99.3 | 28 | PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease + pdz1 domain of degq from2 escherichia coli
20 | c2joaA_ |
|  | 99.2 | 21 | PDB header:protein binding Chain: A: PDB Molecule:serine protease htra1; PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances
21 | c3pv4A_ |
| not modelled | 99.2 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant)
22 | c2kjpA_ |
| not modelled | 99.2 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a
23 | c2zplA_ |
| not modelled | 99.2 | 99 | PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain a
24 | d1fc6a3 |
| not modelled | 99.1 | 24 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:Tail specific protease PDZ domain
25 | d2hgaa1 |
| not modelled | 99.1 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:MTH1368 C-terminal domain-like
26 | d2i4sa1 |
| not modelled | 99.1 | 23 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like
27 | c3qo6B_ |
| not modelled | 99.1 | 25 | PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1
28 | d1ky9b2 |
| not modelled | 99.0 | 27 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
29 | d2i6va1 |
| not modelled | 99.0 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like
30 | c3gdsA_ |
| not modelled | 99.0 | 23 | PDB header:hydrolase/hydrolase activator Chain: A: PDB Molecule:protease degs; PDBTitle: crystal structure of degs h198p/d320a mutant modified by dfp in2 complex with dnrdgnvyyf peptide
31 | d1ky9a1 |
| not modelled | 98.9 | 31 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
32 | c1z87A_ |
| not modelled | 98.9 | 22 | PDB header:protein binding Chain: A: PDB Molecule:alpha-1-syntrophin; PDBTitle: solution structure of the split ph-pdz supramodule of alpha-2 syntrophin
33 | c2eaqA_ |
| not modelled | 98.9 | 15 | PDB header:metal binding protein Chain: A: PDB Molecule:lim domain only protein 7; PDBTitle: crystal structure of pdz domain of kiaa0858 (lim), ms07932 from homo sapiens
34 | d1w9ea1 |
| not modelled | 98.9 | 23 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
35 | c1ky9A_ |
| not modelled | 98.9 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:protease do; PDBTitle: crystal structure of degp (htra)
36 | d1qaua_ |
| not modelled | 98.9 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
37 | d1x5qa1 |
| not modelled | 98.8 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
38 | c2krgA_ |
| not modelled | 98.8 | 25 | PDB header:signaling protein Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1; PDBTitle: solution structure of human sodium/ hydrogen exchange2 regulatory factor 1(150-358)
39 | c2kjdA_ |
| not modelled | 98.8 | 25 | PDB header:signaling protein Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe- PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270)
40 | c3diwB_ |
| not modelled | 98.8 | 24 | PDB header:signaling protein/cell adhesion Chain: B: PDB Molecule:tax1-binding protein 3; PDBTitle: c-terminal beta-catenin bound tip-1 structure
41 | d1sota1 |
| not modelled | 98.8 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases
42 | d1ozia_ |
| not modelled | 98.8 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
43 | d1wh1a_ |
| not modelled | 98.8 | 24 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
44 | d1m5za_ |
| not modelled | 98.8 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
45 | d1wifa_ |
| not modelled | 98.8 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
46 | c2vsvB_ |
| not modelled | 98.8 | 18 | PDB header:protein-binding Chain: B: PDB Molecule:rhophilin-2; PDBTitle: crystal structure of the pdz domain of human rhophilin-2
47 | c3eggC_ |
| not modelled | 98.8 | 30 | PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
48 | c2vwrA_ |
| not modelled | 98.8 | 17 | PDB header:protein-binding Chain: A: PDB Molecule:ligand of numb protein x 2; PDBTitle: crystal structure of the second pdz domain of numb-binding2 protein 2
49 | c2he4A_ |
| not modelled | 98.8 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif
50 | d1wfga_ |
| not modelled | 98.7 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
51 | d1p1da2 |
| not modelled | 98.7 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
52 | d1q3oa_ |
| not modelled | 98.7 | 31 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
53 | c3l4fD_ |
| not modelled | 98.7 | 25 | PDB header:signaling protein/protein binding Chain: D: PDB Molecule:sh3 and multiple ankyrin repeat domains protein PDBTitle: crystal structure of betapix coiled-coil domain and shank2 pdz complex
54 | c3shuB_ |
| not modelled | 98.7 | 27 | PDB header:cell adhesion Chain: B: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3
55 | d1pdra_ |
| not modelled | 98.7 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
56 | c2eehA_ |
| not modelled | 98.7 | 30 | PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 7; PDBTitle: solution structure of first pdz domain of pdz domain2 containing protein 7
57 | c2komA_ |
| not modelled | 98.7 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning defective 3 homolog; PDBTitle: solution structure of humar par-3b pdz2 (residues 451-549)
58 | d1ueqa_ |
| not modelled | 98.7 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
59 | d1rgwa_ |
| not modelled | 98.7 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
60 | d1uf1a_ |
| not modelled | 98.7 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
61 | c2egkC_ |
| not modelled | 98.7 | 23 | PDB header:protein binding Chain: C: PDB Molecule:general receptor for phosphoinositides 1- PDBTitle: crystal structure of tamalin pdz-intrinsic ligand fusion2 protein
62 | c2q3gA_ |
| not modelled | 98.7 | 21 | PDB header:structural genomics Chain: A: PDB Molecule:pdz and lim domain protein 7; PDBTitle: structure of the pdz domain of human pdlim7 bound to a c-2 terminal extension from human beta-tropomyosin
63 | d1q7xa_ |
| not modelled | 98.7 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
64 | d1g9oa_ |
| not modelled | 98.7 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
65 | c2iwnA_ |
| not modelled | 98.7 | 27 | PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: 3rd pdz domain of multiple pdz domain protein mpdz (casp2 target)
66 | d2f5ya1 |
| not modelled | 98.7 | 19 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
67 | d1d5ga_ |
| not modelled | 98.7 | 29 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
68 | d2f0aa1 |
| not modelled | 98.7 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
69 | d1uhpa_ |
| not modelled | 98.7 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
70 | d1tp5a1 |
| not modelled | 98.7 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
71 | d1be9a_ |
| not modelled | 98.7 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
72 | c2gzvA_ |
| not modelled | 98.7 | 23 | PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target)
73 | c2jxoA_ |
| not modelled | 98.7 | 25 | PDB header:protein binding Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50; PDBTitle: structure of the second pdz domain of nherf-1
74 | c3khfA_ |
| not modelled | 98.6 | 29 | PDB header:transferase Chain: A: PDB Molecule:microtubule-associated serine/threonine-protein PDBTitle: the crystal structure of the pdz domain of human microtubule2 associated serine/threonine kinase 3 (mast3)
75 | c2jilA_ |
| not modelled | 98.6 | 27 | PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1)
76 | d1t2ma1 |
| not modelled | 98.6 | 28 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
77 | c2v90E_ |
| not modelled | 98.6 | 21 | PDB header:protein-binding Chain: E: PDB Molecule:pdz domain-containing protein 3; PDBTitle: crystal structure of the 3rd pdz domain of intestine- and2 kidney-enriched pdz domain ikepp (pdzd3)
78 | c3k1rA_ |
| not modelled | 98.6 | 20 | PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
79 | d2fe5a1 |
| not modelled | 98.6 | 23 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
80 | c2qktB_ |
| not modelled | 98.6 | 20 | PDB header:peptide binding protein Chain: B: PDB Molecule:inactivation-no-after-potential d protein; PDBTitle: crystal structure of the 5th pdz domain of inad
81 | c3qikA_ |
| not modelled | 98.6 | 19 | PDB header:hydrolase regulator Chain: A: PDB Molecule:phosphatidylinositol 3,4,5-trisphosphate-dependent rac PDBTitle: crystal structure of the first pdz domain of prex1
82 | c2e7kA_ |
| not modelled | 98.6 | 24 | PDB header:membrane protein Chain: A: PDB Molecule:maguk p55 subfamily member 2; PDBTitle: solution structure of the pdz domain from human maguk p552 subfamily member 2
83 | c2ogpA_ |
| not modelled | 98.6 | 25 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of the second pdz domain of par-3
84 | c2k1zA_ |
| not modelled | 98.6 | 23 | PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: solution structure of par-3 pdz3
85 | c2jikB_ |
| not modelled | 98.6 | 26 | PDB header:membrane protein Chain: B: PDB Molecule:synaptojanin-2 binding protein; PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein
86 | d1va8a1 |
| not modelled | 98.6 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
87 | c2jreA_ |
| not modelled | 98.6 | 30 | PDB header:de novo protein Chain: A: PDB Molecule:c60-1 pdz domain peptide; PDBTitle: c60-1, a pdz domain designed using statistical coupling2 analysis
88 | d1ihja_ |
| not modelled | 98.6 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
89 | c2d92A_ |
| not modelled | 98.6 | 21 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the fifth pdz domain of inad-like2 protein
90 | c2fneB_ |
| not modelled | 98.6 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 13th pdz domain of mpdz
91 | c2dkrA_ |
| not modelled | 98.6 | 19 | PDB header:protein transport Chain: A: PDB Molecule:lin-7 homolog b; PDBTitle: solution structure of the pdz domain from human lin-72 homolog b
92 | c2edzA_ |
| not modelled | 98.6 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:pdz domain-containing protein 1; PDBTitle: solution structures of the pdz domain of mus musculus pdz2 domain-containing protein 1
93 | d1ry4a_ |
| not modelled | 98.6 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
94 | c2o2tB_ |
| not modelled | 98.6 | 16 | PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 1st pdz domain of mpdz
95 | d1wjla_ |
| not modelled | 98.6 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
96 | c2omjA_ |
| not modelled | 98.6 | 29 | PDB header:cell adhesion Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 12; PDBTitle: solution structure of larg pdz domain
97 | c2qg1A_ |
| not modelled | 98.6 | 21 | PDB header:signaling protein Chain: A: PDB Molecule:multiple pdz domain protein; PDBTitle: crystal structure of the 11th pdz domain of mpdz (mupp1)
98 | c2d90A_ |
| not modelled | 98.6 | 19 | PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1
99 | c3qglD_ |
| not modelled | 98.6 | 32 | PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3
100 | d1whaa_ |
| not modelled | 98.6 | 24 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
101 | c2dmzA_ |
| not modelled | 98.6 | 33 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the third pdz domain of human inad-2 like protein
102 | c2dluA_ |
| not modelled | 98.6 | 24 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the second pdz domain of human inad-2 like protein
103 | d2byga1 |
| not modelled | 98.6 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
104 | d1kwaa_ |
| not modelled | 98.6 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
105 | d2cssa1 |
| not modelled | 98.6 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
106 | c3hpmA_ |
| not modelled | 98.6 | 23 | PDB header:protein binding Chain: A: PDB Molecule:protein interacting with prkca 1; PDBTitle: oxidized dimeric pick1 pdz c46g mutant in complex with the carboxyl2 tail peptide of glur2
107 | d1p1da1 |
| not modelled | 98.6 | 32 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
108 | d1wf8a1 |
| not modelled | 98.6 | 32 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
109 | d1whda_ |
| not modelled | 98.6 | 17 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
110 | c2i04B_ |
| not modelled | 98.6 | 21 | PDB header:peptide binding protein Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6
111 | c2z17A_ |
| not modelled | 98.6 | 24 | PDB header:protein binding Chain: A: PDB Molecule:pleckstrin homology sec7 and coiled-coil domains- PDBTitle: crystal sturcture of pdz domain from human pleckstrin2 homology, sec7
112 | c2v1wB_ |
| not modelled | 98.6 | 21 | PDB header:structural protein Chain: B: PDB Molecule:pdz and lim domain protein 4; PDBTitle: crystal structure of human lim protein ril (pdlim4) pdz2 domain bound to the c-terminal peptide of human alpha-3 actinin-1
113 | d1n7ea_ |
| not modelled | 98.6 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
114 | d1um1a_ |
| not modelled | 98.6 | 26 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
115 | c2dm8A_ |
| not modelled | 98.6 | 24 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the eighth pdz domain of human inad-2 like protein
116 | d1ujda_ |
| not modelled | 98.6 | 22 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
117 | d1wf7a_ |
| not modelled | 98.6 | 16 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
118 | c3shwA_ |
| not modelled | 98.6 | 28 | PDB header:cell adhesion Chain: A: PDB Molecule:tight junction protein zo-1; PDBTitle: crystal structure of zo-1 pdz3-sh3-guk supramodule complex with2 connexin-45 peptide
119 | d1vaea_ |
| not modelled | 98.6 | 21 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
120 | c3b76A_ |
| not modelled | 98.6 | 28 | PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase lnx; PDBTitle: crystal structure of the third pdz domain of human ligand-of-numb2 protein-x (lnx1) in complex with the c-terminal peptide from the3 coxsackievirus and adenovirus receptor

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0