Phyre 2 alignment of P0AEH1 with c2yt7A_

Return to main results | Retrieve Phyre Job Id

Job Description | P0AEH1
Confidence | 98.37% | Date | Thu Jan 5 11:23:20 GMT 2012
Rank | 181 | Aligned Residues | 74
% Identity | 23% | Template | c2yt7A_
PDB info | PDB header:protein transport | Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family | PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 206 | . | . | . | 210 | . | . | . | . | . | . | . |  |  |  |  |  | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |  | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . |  |  | . | . | . | . | 260 | . | . | . | . | . | . | . | . |  | . | 270 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query Sequence |  | K | E | D | P | V | S | S | L | G | I | R | P | . | . | . | . | . | R | G | P | Q | I | E | P | V | L | E | N | V | Q | P | N | S | A | A | S | K | A | G | . | L | Q | A | G | D | R | I | V | K | V | D | G | Q | P | L | T | . | . | Q | W | V | T | F | V | M | L | V | R | D | N | P | . | G | K | S | L | A | L | E | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | K | R | R | G | E | G | L | G | V | A | L | V | E | S | G | W | G | S | L | L | P | T | A | V | I | A | N | L | L | H | G | G | P | A | E | R | S | G | A | L | S | I | G | D | R | L | T | A | I | N | G | T | S | L | V | G | L | P | L | A | A | C | Q | A | A | V | R | E | T | K | S | Q | T | S | V | T | L | S | I
Template Known Secondary structure |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  | T | T | S | T | T | G | G | G | S | S |  |  | T | T |  |  |  |  |  |  | S | S |  | B |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | .
|  | 277 | . | .
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | E | R | Q
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | V | H | C
Template Known Secondary structure |  |  |  |
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 96 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions