08/01/2012 07:10:17 : INFO  : Run start: Sun Jan  8 07:10:16 GMT 2012
08/01/2012 07:10:19 : INFO  : Initialised job
08/01/2012 07:10:19 : INFO  : Renaming log file 'phyre2_20120108_071016.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/phyre_20120108_071016.log'
08/01/2012 07:10:20 : INFO  : Initialised job:
Sequence
>batch____
MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV
IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWLVF
IIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI
TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL
QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG
FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG
PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS
ERVQDFCYRIGSILLVLLMGLALFNDFSRL

08/01/2012 07:10:20 : INFO  : Checked sequence
08/01/2012 07:10:21 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 07:10:21 : INFO  : PSI-BLAST 3 iterations
08/01/2012 07:12:29 : INFO  : PSI-BLAST 5 iterations
08/01/2012 07:15:34 : INFO  : Finished PSI-BLAST
08/01/2012 07:15:35 : INFO  : Running Buildali to generate a3m file
08/01/2012 07:33:02 : INFO  : Converting to HMM
08/01/2012 07:33:09 : INFO  : Calibrating HMM
08/01/2012 07:33:25 : INFO  : Searching HMM database
08/01/2012 07:44:12 : INFO  : Finished buildali
08/01/2012 07:44:13 : INFO  : Predicting secondary structure
08/01/2012 07:44:15 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 07:44:15 : INFO  : Predicting Disordered regions
08/01/2012 07:44:17 : INFO  : Predicted Disorder (Disopred)
08/01/2012 07:44:17 : INFO  : Running memsat_svm check
08/01/2012 07:48:01 : INFO  : Running memsat_svm full
08/01/2012 07:52:50 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c74bb06c30929ed5'
08/01/2012 07:52:50 : INFO  : Initialising fold library search
08/01/2012 07:52:51 : INFO  : Initialised search input
08/01/2012 07:52:52 : INFO  : Building Ensemble models
08/01/2012 07:52:53 : INFO  : Building hh.c3rleA_.model.1.pdb
08/01/2012 07:52:58 : INFO  : Building hh.c3pv5B_.model.2.pdb
08/01/2012 07:53:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/hh.c3pv5B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/c3pv5B_.2.pdb
08/01/2012 07:53:06 : INFO  : Building hh.c4a8aI_.model.3.pdb
08/01/2012 07:53:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/hh.c4a8aI_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/c4a8aI_.3.pdb
08/01/2012 07:53:11 : INFO  : Building hh.c3b4rB_.model.4.pdb
08/01/2012 07:53:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/hh.c3b4rB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c74bb06c30929ed5/c3b4rB_.7.pdb
08/01/2012 07:53:16 : INFO  : Building c3rleA_.1.pdb
08/01/2012 07:53:20 : INFO  : Building c3pv5B_.2.pdb
08/01/2012 07:53:25 : INFO  : Building c4a8aI_.3.pdb
08/01/2012 07:53:30 : INFO  : Building c1p1dA_.4.pdb
08/01/2012 07:53:34 : INFO  : Building c2ka9A_.5.pdb
08/01/2012 07:53:39 : INFO  : Building c2qt5A_.6.pdb
08/01/2012 07:53:45 : INFO  : Building c3b4rB_.7.pdb
08/01/2012 07:53:50 : INFO  : Building c3r0hA_.8.pdb
08/01/2012 07:53:54 : INFO  : Building c1w9qB_.9.pdb
08/01/2012 07:53:59 : INFO  : Building c1u3bA_.10.pdb
08/01/2012 07:54:03 : INFO  : Building c2xkxB_.11.pdb
08/01/2012 07:54:09 : INFO  : Building c2p3wB_.12.pdb
08/01/2012 07:54:13 : INFO  : Building d1lcya1.13.pdb
08/01/2012 07:54:17 : INFO  : Building c3i18A_.14.pdb
08/01/2012 07:54:21 : INFO  : Building c1lcyA_.15.pdb
08/01/2012 07:54:25 : INFO  : Building d2z9ia1.16.pdb
08/01/2012 07:54:29 : INFO  : Building c2kl1A_.17.pdb
08/01/2012 07:54:33 : INFO  : Building c2zpmA_.18.pdb
08/01/2012 07:54:37 : INFO  : Building c3stjC_.19.pdb
08/01/2012 07:54:42 : INFO  : Building c2joaA_.20.pdb
08/01/2012 07:55:07 : INFO  : Finished HH model building
08/01/2012 07:55:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 07:55:54 : INFO  : html domain output complete ID 'c74bb06c30929ed5'
08/01/2012 08:21:33 : INFO  : Run end  : Sun Jan  8 08:21:33 GMT 2012
