Phyre 2 alignment of P77515 with c3npeA_

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Job Description | P77515
Confidence | 3.49% | Date | Thu Jan 5 12:30:11 GMT 2012
Rank | 35 | Aligned Residues | 43
% Identity | 26% | Template | c3npeA_
PDB info | PDB header:oxidoreductase | Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; | PDBTitle: structure of vp14 in complex with oxygen
Resolution | 3.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |  | . | . | . | . | . | 140 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Query Sequence |  | P | W | P | S | D | T | V | P | S | G | Y | A | L | M | Q | G | Q | T | F | D | K | S | A | Y | P | K | L | A | V | A | Y | P | S | G | V | I | P | . | D | M | R | G | W | T | I | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | L | P | S | T | A | D | P | A | V | Q | . | . | I | A | G | N | F | A | P | V | G | E | R | P | P | V | H | E | L | P | V | S | G | R | I | P | P | F | I | D | G | V | Y | A | R
Template Known Secondary structure |  |  |  |  | T | T | T |  |  |  |  |  | . | . | T | S | G | G | G | S |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 112 | . | . | . | . | . | . | . | 120 | . | . |  |  | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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