Phyre 2 Results for P77515

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Email | l.a.kelley@imperial.ac.uk
Description | P77515
Date | Thu Jan 5 12:30:11 GMT 2012
Unique Job ID | c71dfe9d0b877a80

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2xgfA_
Top template information
PDB header:viral protein Chain: A: PDB Molecule:long tail fiber protein p37; PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip
Confidence and coverage
Confidence: | 100.0% | Coverage: | 67%
215 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
298 residues ( 93%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | I | T | A | L | T | D | N | T | Q | G | A | A | G | L | E | L | Y | E | V | Y | N | N | G | Y | P | T | A | Y | G | N | I | I | H | L | K | G | M | T | A | V | G | E | G | E | L | L | I | G | W | S | G | T | S | G | A | H | A | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | F | I | R | S | R | R | D | T | T | D | A | N | W | S | P | W | A | Q | L | Y | T | S | A | H | P | P | A | E | F | Y | P | V | G | A | P | I | P | W | P | S | D | T | V | P | S | G | Y | A | L | M | Q | G | Q | T | F | D | K | S | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Y | P | K | L | A | V | A | Y | P | S | G | V | I | P | D | M | R | G | W | T | I | K | G | K | P | A | S | G | R | A | V | L | S | Q | E | Q | D | G | I | K | S | H | T | H | S | A | S | A | S | S | T | D | L | G | T | E | T | T | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  | ? | ? |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | F | D | Y | G | T | K | S | T | N | N | T | G | A | H | T | H | S | I | S | G | T | A | N | S | A | G | A | H | Q | H | K | S | S | G | A | F | G | G | T | N | T | S | I | F | P | N | G | Y | T | A | I | S | N | L | S | A | G | I | M | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? |  | ? | ? |  | ? | ? | ? | ? |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | T | T | S | G | S | G | Q | T | R | N | A | G | K | T | S | S | D | G | A | H | T | H | S | L | S | G | T | A | A | S | A | G | A | H | A | H | T | V | G | I | G | A | H | T | H | S | V | A | I | G | S | H | G | H | T | I | T | V | N | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320
Sequence |  | A | G | N | A | E | N | T | V | K | N | I | A | F | N | Y | I | V | R | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2xgfA_ |

### PDB 2xgf chain A

Region: 90 - 320
Aligned: 215
Modelled: 216
Confidence: 100.0%
Identity: 70%
PDB header:viral protein
Chain: A: PDB Molecule:long tail fiber protein p37;
PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip

Phyre2
2 |
| c1pdiQ_ |

### PDB 1pdi chain Q

Region: 81 - 319
Aligned: 186
Modelled: 186
Confidence: 100.0%
Identity: 19%
PDB header:structural protein
Chain: Q: PDB Molecule:short tail fiber protein;
PDBTitle: fitting of the c-terminal part of the short tail fibers2 into the cryo-em reconstruction of t4 baseplate

Phyre2
3 |
| d1ocya_ |

### PDB 1ocy chain A

Region: 83 - 319
Aligned: 177
Modelled: 179
Confidence: 100.0%
Identity: 21%
Fold: Receptor-binding domain of short tail fibre protein gp12
Superfamily: Receptor-binding domain of short tail fibre protein gp12
Family: Receptor-binding domain of short tail fibre protein gp12

Phyre2
4 |
| c1h6wA_ |

### PDB 1h6w chain A

Region: 4 - 137
Aligned: 131
Modelled: 134
Confidence: 99.5%
Identity: 17%
PDB header:structural protein
Chain: A: PDB Molecule:bacteriophage t4 short tail fibre;
PDBTitle: crystal structure of a heat- and protease-stable fragment2 of the bacteriophage t4 short fibre

Phyre2
5 |
| c2fkkA_ |

### PDB 2fkk chain A

Region: 79 - 200
Aligned: 104
Modelled: 105
Confidence: 88.3%
Identity: 15%
PDB header:viral protein
Chain: A: PDB Molecule:baseplate structural protein gp10;
PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10

Phyre2
6 |
| c2fl8N_ |

### PDB 2fl8 chain N

Region: 79 - 213
Aligned: 122
Modelled: 134
Confidence: 68.1%
Identity: 16%
PDB header:virus/viral protein
Chain: N: PDB Molecule:baseplate structural protein gp10;
PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation.

Phyre2
7 |
| d1m5ha2 |

### PDB 1m5h chain A domain 2

Region: 94 - 138
Aligned: 39
Modelled: 45
Confidence: 38.2%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2
8 |
| d1m5sa2 |

### PDB 1m5s chain A domain 2

Region: 93 - 138
Aligned: 40
Modelled: 46
Confidence: 33.9%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2
9 |
| c1m5hF_ |

### PDB 1m5h chain F

Region: 94 - 139
Aligned: 40
Modelled: 46
Confidence: 21.3%
Identity: 25%
PDB header:transferase
Chain: F: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 formyltransferase from archaeoglobus fulgidus

Phyre2
10 |
| c1m5sC_ |

### PDB 1m5s chain C

Region: 94 - 138
Aligned: 39
Modelled: 45
Confidence: 17.6%
Identity: 23%
PDB header:transferase
Chain: C: PDB Molecule:formylmethanofuran--tetrahydromethanopterin
PDBTitle: formylmethanofuran:tetrahydromethanopterin2 fromyltransferase from methanosarcina barkeri

Phyre2
11 |
| c2pfcA_ |

### PDB 2pfc chain A

Region: 116 - 141
Aligned: 26
Modelled: 26
Confidence: 9.9%
Identity: 38%
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein rv0098/mt0107;
PDBTitle: structure of mycobacterium tuberculosis rv0098

Phyre2
12 |
| c2x3lA_ |

### PDB 2x3l chain A

Region: 91 - 104
Aligned: 14
Modelled: 14
Confidence: 7.8%
Identity: 43%
PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Phyre2
13 |
| d1fmd1_ |

### PDB 1fmd chain 1

Region: 91 - 189
Aligned: 58
Modelled: 72
Confidence: 7.4%
Identity: 28%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Phyre2
14 |
| d1ftra2 |

### PDB 1ftr chain A domain 2

Region: 94 - 137
Aligned: 38
Modelled: 44
Confidence: 7.2%
Identity: 24%
Fold: Ferredoxin-like
Superfamily: Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family: Formylmethanofuran:tetrahydromethanopterin formyltransferase

Phyre2
15 |
| d1k25a2 |

### PDB 1k25 chain A domain 2

Region: 133 - 142
Aligned: 10
Modelled: 10
Confidence: 7.0%
Identity: 60%
Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain

Phyre2
16 |
| d1pyya2 |

### PDB 1pyy chain A domain 2

Region: 132 - 142
Aligned: 11
Modelled: 11
Confidence: 6.8%
Identity: 55%
Fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain

Phyre2
17 |
| d1c4ka3 |

### PDB 1c4k chain A domain 3

Region: 91 - 101
Aligned: 11
Modelled: 11
Confidence: 6.3%
Identity: 36%
Fold: Ornithine decarboxylase C-terminal domain
Superfamily: Ornithine decarboxylase C-terminal domain
Family: Ornithine decarboxylase C-terminal domain

Phyre2
18 |
| c2wzr1_ |

### PDB 2wzr chain 1

Region: 91 - 130
Aligned: 39
Modelled: 40
Confidence: 5.8%
Identity: 18%
PDB header:virus
Chain: 1: PDB Molecule:polyprotein;
PDBTitle: the structure of foot and mouth disease virus serotype sat1

Phyre2
19 |
| c3kioB_ |

### PDB 3kio chain B

Region: 95 - 142
Aligned: 37
Modelled: 48
Confidence: 5.7%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: mouse rnase h2 complex

Phyre2
20 |
| c3n75E_ |

### PDB 3n75 chain E

Region: 91 - 101
Aligned: 11
Modelled: 11
Confidence: 5.5%
Identity: 45%
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, inducible;
PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci

Phyre2
21 |
22 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2xgfA_ |
|  | 100.0 | 70 | PDB header:viral protein Chain: A: PDB Molecule:long tail fiber protein p37; PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip
2 | c1pdiQ_ |
|  | 100.0 | 19 | PDB header:structural protein Chain: Q: PDB Molecule:short tail fiber protein; PDBTitle: fitting of the c-terminal part of the short tail fibers2 into the cryo-em reconstruction of t4 baseplate
3 | d1ocya_ |
|  | 100.0 | 21 | Fold:Receptor-binding domain of short tail fibre protein gp12 Superfamily:Receptor-binding domain of short tail fibre protein gp12 Family:Receptor-binding domain of short tail fibre protein gp12
4 | c1h6wA_ |
|  | 99.5 | 17 | PDB header:structural protein Chain: A: PDB Molecule:bacteriophage t4 short tail fibre; PDBTitle: crystal structure of a heat- and protease-stable fragment2 of the bacteriophage t4 short fibre
5 | c2fkkA_ |
|  | 88.3 | 15 | PDB header:viral protein Chain: A: PDB Molecule:baseplate structural protein gp10; PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10
6 | c2fl8N_ |
|  | 68.1 | 16 | PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation.
7 | d1m5ha2 |
|  | 38.2 | 26 | Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
8 | d1m5sa2 |
|  | 33.9 | 23 | Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
9 | c1m5hF_ |
|  | 21.3 | 25 | PDB header:transferase Chain: F: PDB Molecule:formylmethanofuran--tetrahydromethanopterin PDBTitle: formylmethanofuran:tetrahydromethanopterin2 formyltransferase from archaeoglobus fulgidus
10 | c1m5sC_ |
|  | 17.6 | 23 | PDB header:transferase Chain: C: PDB Molecule:formylmethanofuran--tetrahydromethanopterin PDBTitle: formylmethanofuran:tetrahydromethanopterin2 fromyltransferase from methanosarcina barkeri
11 | c2pfcA_ |
|  | 9.9 | 38 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv0098/mt0107; PDBTitle: structure of mycobacterium tuberculosis rv0098
12 | c2x3lA_ |
|  | 7.8 | 43 | PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
13 | d1fmd1_ |
|  | 7.4 | 28 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
14 | d1ftra2 |
|  | 7.2 | 24 | Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
15 | d1k25a2 |
|  | 7.0 | 60 | Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
16 | d1pyya2 |
|  | 6.8 | 55 | Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
17 | d1c4ka3 |
|  | 6.3 | 36 | Fold:Ornithine decarboxylase C-terminal domain Superfamily:Ornithine decarboxylase C-terminal domain Family:Ornithine decarboxylase C-terminal domain
18 | c2wzr1_ |
|  | 5.8 | 18 | PDB header:virus Chain: 1: PDB Molecule:polyprotein; PDBTitle: the structure of foot and mouth disease virus serotype sat1
19 | c3kioB_ |
|  | 5.7 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease h2 subunit b; PDBTitle: mouse rnase h2 complex
20 | c3n75E_ |
|  | 5.5 | 45 | PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
21 | c2vycA_ |
| not modelled | 5.4 | 25 | PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
22 | d1uptb_ |
| not modelled | 5.4 | 22 | Fold:GRIP domain Superfamily:GRIP domain Family:GRIP domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0