17/01/2012 21:46:11 : INFO  : Run start: Tue Jan 17 21:46:10 GMT 2012
17/01/2012 21:46:17 : INFO  : Initialised job
17/01/2012 21:46:19 : INFO  : Renaming log file 'phyre2_20120117_214609.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c71dfe9d0b877a80/phyre_20120117_214609.log'
17/01/2012 21:46:20 : INFO  : Initialised job:
Sequence
>batch____
MNITALTDNTQGAAGLELYEVYNNGYPTAYGNIIHLKGMTAVGEGELLIGWSGTSGAHAP
AFIRSRRDTTDANWSPWAQLYTSAHPPAEFYPVGAPIPWPSDTVPSGYALMQGQTFDKSA
YPKLAVAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTETTSS
FDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGGTNTSIFPNGYTAISNLSAGIMS
TTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNA
AGNAENTVKNIAFNYIVRLA

17/01/2012 21:46:21 : INFO  : Checked sequence
17/01/2012 21:46:24 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 21:46:25 : INFO  : PSI-BLAST 3 iterations
17/01/2012 21:47:59 : INFO  : PSI-BLAST 5 iterations
17/01/2012 21:49:38 : INFO  : Finished PSI-BLAST
17/01/2012 21:49:40 : INFO  : Running Buildali to generate a3m file
17/01/2012 21:55:53 : INFO  : Converting to HMM
17/01/2012 21:55:55 : INFO  : Calibrating HMM
17/01/2012 21:56:10 : INFO  : Searching HMM database
17/01/2012 22:01:23 : INFO  : Finished buildali
17/01/2012 22:01:25 : INFO  : Predicting secondary structure
17/01/2012 22:01:34 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 22:01:35 : INFO  : Predicting Disordered regions
17/01/2012 22:01:40 : INFO  : Predicted Disorder (Disopred)
17/01/2012 22:01:42 : INFO  : Running memsat_svm check
17/01/2012 22:05:45 : INFO  : Running memsat_svm full
17/01/2012 22:09:49 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c71dfe9d0b877a80'
17/01/2012 22:09:51 : INFO  : Initialising fold library search
17/01/2012 22:09:55 : INFO  : Initialised search input
17/01/2012 22:09:58 : INFO  : Building Ensemble models
17/01/2012 22:10:02 : INFO  : Building hh.c2xgfA_.model.1.pdb
17/01/2012 22:10:23 : INFO  : Building hh.c1h6wA_.model.2.pdb
17/01/2012 22:10:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c71dfe9d0b877a80/hh.c1h6wA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c71dfe9d0b877a80/c1h6wA_.4.pdb
17/01/2012 22:10:40 : INFO  : Building c2xgfA_.1.pdb
17/01/2012 22:10:56 : INFO  : Building c1pdiQ_.2.pdb
17/01/2012 22:11:15 : INFO  : Building d1ocya_.3.pdb
17/01/2012 22:11:34 : INFO  : Building c1h6wA_.4.pdb
17/01/2012 22:11:53 : INFO  : Building c2fkkA_.5.pdb
17/01/2012 22:12:14 : INFO  : Building c2fl8N_.6.pdb
17/01/2012 22:12:32 : INFO  : Building d1m5ha2.7.pdb
17/01/2012 22:12:48 : INFO  : Building d1m5sa2.8.pdb
17/01/2012 22:13:07 : INFO  : Building c1m5hF_.9.pdb
17/01/2012 22:13:25 : INFO  : Building c1m5sC_.10.pdb
17/01/2012 22:13:43 : INFO  : Building c2pfcA_.11.pdb
17/01/2012 22:14:01 : INFO  : Building c2x3lA_.12.pdb
17/01/2012 22:14:19 : INFO  : Building d1fmd1_.13.pdb
17/01/2012 22:14:37 : INFO  : Building d1ftra2.14.pdb
17/01/2012 22:14:51 : INFO  : Building d1k25a2.15.pdb
17/01/2012 22:15:10 : INFO  : Building d1pyya2.16.pdb
17/01/2012 22:15:28 : INFO  : Building d1c4ka3.17.pdb
17/01/2012 22:15:45 : INFO  : Building c2wzr1_.18.pdb
17/01/2012 22:16:04 : INFO  : Building c3kioB_.19.pdb
17/01/2012 22:16:23 : INFO  : Building c3n75E_.20.pdb
17/01/2012 22:17:26 : INFO  : Finished HH model building
17/01/2012 22:17:29 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 22:18:29 : INFO  : html domain output complete ID 'c71dfe9d0b877a80'
17/01/2012 22:31:33 : INFO  : Run end  : Tue Jan 17 22:31:32 GMT 2012
