BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (692 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 886 0.0 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 801 0.0 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 669 0.0 UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 605 e-171 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 603 e-171 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 564 e-159 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 559 e-157 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 552 e-155 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 551 e-155 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 548 e-154 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 548 e-154 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 546 e-153 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 536 e-150 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 536 e-150 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 530 e-149 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 523 e-146 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 520 e-146 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 519 e-145 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 518 e-145 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 517 e-145 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 517 e-145 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 514 e-144 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 508 e-142 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 508 e-142 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 506 e-141 UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 504 e-141 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 503 e-141 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 502 e-140 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 501 e-140 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 500 e-140 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 499 e-139 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 495 e-138 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 493 e-137 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 491 e-137 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 491 e-137 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 490 e-137 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 490 e-137 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 489 e-136 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 486 e-135 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 485 e-135 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 485 e-135 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 483 e-134 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 482 e-134 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 479 e-133 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 472 e-131 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 470 e-131 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 469 e-130 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 469 e-130 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 468 e-130 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 461 e-128 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 457 e-127 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 451 e-125 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 447 e-124 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 442 e-122 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 431 e-119 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 429 e-118 UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 413 e-113 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 401 e-110 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 387 e-106 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 385 e-105 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 384 e-105 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 379 e-103 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 373 e-101 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 372 e-101 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 369 e-100 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 368 e-100 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 366 1e-99 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 366 2e-99 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 363 2e-98 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 362 3e-98 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 351 6e-95 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 350 7e-95 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 349 2e-94 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 347 9e-94 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 345 4e-93 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 343 2e-92 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 337 1e-90 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 335 3e-90 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 333 2e-89 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 330 1e-88 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 327 1e-87 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 324 6e-87 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 321 6e-86 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 319 3e-85 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 316 2e-84 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 308 7e-82 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 307 9e-82 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 299 2e-79 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 293 1e-77 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 288 7e-76 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 288 7e-76 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 285 3e-75 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 284 8e-75 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 283 1e-74 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 251 5e-65 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 237 1e-60 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 233 2e-59 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 214 9e-54 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 212 3e-53 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 188 5e-46 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 169 3e-40 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 160 2e-37 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 153 2e-35 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 148 7e-34 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 140 1e-31 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 139 5e-31 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 115 7e-24 UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri... 108 8e-22 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 85 1e-14 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 79 6e-13 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 75 1e-11 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 74 1e-11 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 74 3e-11 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 67 2e-09 UniRef50_UPI000190D087 possible secretory protein (associated wi... 65 1e-08 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/696 (63%), Positives = 557/696 (80%), Gaps = 8/696 (1%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M N +++LR+ +LK+TQWQILAGPILIL+ILSMMVLPL F+LD+ FTFNIALSI++LL Sbjct: 1 MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG +AG+V+E+FGHFLVG Sbjct: 61 VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++ Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M + A E Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-----NNTVVEATWN 355 +LGLVPGMPN++FL+FT L L+WW+ E+K E +K + ++ + EA+WN Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWL--YEKKYDLENDFIKSNKKYKFIHDAISEASWN 358 Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 DV+LED + +E+GY+L PM D + G+LL RIR +RKK AQE+GFLPP+V I++NM L Sbjct: 359 DVELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSG 418 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 YRI +KGVE+G G + GR++AI+ G +LP E +P FGL+ WI+ K +AQ Sbjct: 419 NSYRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQ 478 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 +GY+V+E+S V++THLN LI+ H +LFGRQEAQQLL+RV + PKLTEDL+P + LT Sbjct: 479 KKGYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLT 538 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 HK+L+NLL E VPIRDMRTILETL+EHA Q DP+ELT++VR+AL + I Q+ F + Sbjct: 539 IFHKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNN 598 Query: 596 EVHVIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 + +IGL+ LERLLL +L+ G +EP L++ LL QT+EA+ +Q ++G+P VLLV H+L Sbjct: 599 IIEIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSL 658 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R LS+FLR++ P+L VLS E+ D + I+MT IG Sbjct: 659 RYFLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIG 694 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/700 (58%), Positives = 525/700 (75%), Gaps = 9/700 (1%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+N+ ++ + + ++Q L+GP+LIL+ILSMMVLPL FILDL FTFNIALSI+VLL Sbjct: 1 MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG Sbjct: 61 MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE + Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+ AA+ Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS VLG Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357 +LGLVPGMPN++FL+FT L ++W I +K +N + +A+WNDV Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360 Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 QLE S+ +E+G LIPM+ + LL +IR++RKK A+ +GFLPP+VHIRDN +L Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420 Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474 Y IL+KG+EI G G++LAIN G A+G LP E T DP F + WI S L QA Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + +GY + E STV++THLNH+I H + LFGRQEAQQLLD V++ PKL EDL+P + L Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAITQQWFPG 593 T H+VLQNLL E VPIRDM+TILETL HAP Q+D LT++VR++LG+ I Q F Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIFQN 600 Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 +++ VI D+ LE++LL+ + LEPGL + ++ + Q+ + ++ P VLLV+H Sbjct: 601 -NKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 LR +++ L +++P++ VLSNLEL D I T IG + Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/695 (51%), Positives = 478/695 (68%), Gaps = 44/695 (6%) Query: 40 PAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILME 99 PAF+LD F+FNIALSI+VLLVA+++ R L+FA FPTILL TLLRLALNVASTR++L+E Sbjct: 51 PAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAVFPTILLIATLLRLALNVASTRVVLLE 110 Query: 100 GHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDG 159 GH G AAGKV++AFG ++GGN+A+G+VVF+IL+IINF+V+TKGAGRI+EV ARF LD Sbjct: 111 GHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIILIIINFVVVTKGAGRISEVSARFTLDA 170 Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219 MPGKQMAIDADLNAG+I +DEA+ RR +V EADFYG+MDGASKFVRGD++AGILI++IN Sbjct: 171 MPGKQMAIDADLNAGIIDQDEARTRREDVASEADFYGAMDGASKFVRGDSVAGILILIIN 230 Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279 I GGLLVG++QH + A E Y LLTIGDGLVAQIP+L++S AA ++VTRV++ +D+ Sbjct: 231 ICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVAQIPSLLLSVAAAIMVTRVNSSEDMNR 290 Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA----- 334 Q+++Q+F +P + ++ ++ ++G +PGMP+ F+ LA++I R Q+A Sbjct: 291 QVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPFITLAIICGILAYYIHFRSQEAEVVEV 350 Query: 335 ------------------PAEPK-PVKMAENNTV------------VEATWNDVQLEDSL 363 P+ P + EN + E +W+DV D + Sbjct: 351 GNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSARQGNPPPQSSEPTEVSWDDVTPVDLV 410 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 G+EVGYRLIP+VD Q GELLGRI+ +RKK +Q++GFL P VHIRDN+DL P+ YRI + Sbjct: 411 GLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQDLGFLIPAVHIRDNLDLLPSGYRITLM 470 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 GV IG G+ +P ++LAINPG G+L G T DPAFGL AIWI+ A +EQAQ GYTVV+ Sbjct: 471 GVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDPAFGLEAIWIDEAQREQAQTLGYTVVD 530 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 STVVATHLN +I H EL G +E Q+ LD + ++ PKL E+LVP +++ L K LQ Sbjct: 531 PSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLGEKSPKLVEELVPETLSINQLLKTLQG 590 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LL E+VPIRDMRTI E LA H D LT++ RV+L R I Q + VI LD Sbjct: 591 LLREQVPIRDMRTIAEALAAHGNKSMDTTALTSIARVSLARQIVQNIVGQDPNLPVITLD 650 Query: 604 TPLERLLLQALQ--------GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 LE+LLLQ++Q G +EP LA+RL E +QEM G P VLLV +R Sbjct: 651 PSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLNKSLVETAKKQEMAGRPIVLLVAAPIR 710 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 P++++F+R + ++ V++ E+ DN+ I + ATIG Sbjct: 711 PMMAQFVRYHISEMHVIAYNEVPDNKQITIEATIG 745 >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 316/669 (47%), Positives = 457/669 (68%), Gaps = 7/669 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 +++++++M++PLP+ +LD + NIA++I++LL ++ + L+F++FP++LL T+ RLA Sbjct: 37 VIVVMAVMIIPLPSELLDFFLSINIAIAIVILLTTIYIHKPLDFSSFPSVLLLATMFRLA 96 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LN+A+TR+IL+ G G +AAG+V+ AFG F+VGGN+ +G+++F ILVIINF+VITKGAGR Sbjct: 97 LNIATTRLILLHGGEGESAAGEVIRAFGQFVVGGNYVVGVIIFSILVIINFIVITKGAGR 156 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD MPGKQMAIDADLN+GLI EDEA++RRSE+ QE++F+G+MDGASKFVRG Sbjct: 157 IAEVAARFTLDKMPGKQMAIDADLNSGLITEDEARRRRSEIEQESEFFGAMDGASKFVRG 216 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAGILI +INIV G ++GV Q +S +A+ YT+LT+GDGLVAQIP LVIS AG + Sbjct: 217 DAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGDGLVAQIPTLVISAGAGFL 276 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 VTR S D ++ + + Q+ + P V+L+SA VLGLL ++PGMP + F L + +W++ Sbjct: 277 VTRASGDANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMPTVAFGLLAIAMGSWSWYL 336 Query: 328 --RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385 R ++ + K + AE E D L ++VGY LI +VD Q G+LL Sbjct: 337 FRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRLDVGYGLISLVDETQHGDLLD 396 Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445 +IRSIR++FAQ+MGF+ P +HI+DN+ L+P Y L+KGVE+G G+ PG +LA+ G Sbjct: 397 KIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGVEVGQGELRPGSYLAMEGGDV 456 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 G + G ATV+PAFGL A WI S +E+A++ GYTVV+ASTV+ATH+ ++ HA E+ Sbjct: 457 TGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDASTVLATHITEMVHNHAHEMLT 516 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 RQE Q LLD V++ PKL E+L+P +V+L + KVLQ LL E+V IRDM TILETLA++ Sbjct: 517 RQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQKVLQGLLRERVSIRDMGTILETLADYG 576 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GL 620 I P +L +VR +L R+I +++ + + + L E L+ +A+ G L Sbjct: 577 KIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPDAENLVAEAIVSGDYGSYLSL 636 Query: 621 EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 P A +LL + + + + + PVL+ +RP + + L LP LVVLS E+ N Sbjct: 637 SPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRVRPFVKQALEGVLPHLVVLSQNEIPAN 696 Query: 681 RHIRMTATI 689 + +I Sbjct: 697 VSVSSLGSI 705 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust. Identities = 329/637 (51%), Positives = 449/637 (70%), Gaps = 3/637 (0%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++ +R L+F+ FPT+LL T Sbjct: 16 VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TLLRL+LNVASTRIILM+GHTG AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI Sbjct: 76 TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A Y LLT+GDGLV QIPAL+IS Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 TAAG++V+R S++QD+ + Q+F P + ++AAVL LG++PG P++ FL A L Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTV-VEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 LA W+ + A + P+ E + V+ TW+D+ D L +EVGYRLIP+VD Q Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G L RI R++FA +MG + P++ +RDN+DL+P +RI +KGV++ G+ G+ LA+ Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 + G G + G VDP L +WI++A E+A+++G+ V+E + ++A + + QHA Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 EL GR E QQLLD +A+ P L ED+ P + LTT+ +LQ L+ E VPIRD RT+ ET Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618 LA AP D +L VR ALGR+I + F G D + VIGL E LL + +G Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 L P D L ++A++ E G PPVLL + LR Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLR 652 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 315/697 (45%), Positives = 449/697 (64%), Gaps = 53/697 (7%) Query: 25 PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84 P+ L+++ +MV+P+P+F+LD+ F NI +S+ VL+VA+ + L+F++FPT+LLF TLL Sbjct: 22 PLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFATLL 81 Query: 85 RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144 RL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VITKG Sbjct: 82 RLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVITKG 141 Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204 AGR++EV ARF LD MPGKQMAIDADLNAGL+ +EAK RR EV EADFYGSMDGASKF Sbjct: 142 AGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGASKF 201 Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264 V+GDA+AG+LI+VINI GGL++G L HG+S+ AA +Y +L IGD LVAQ+PAL++S AA Sbjct: 202 VKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSIAA 261 Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 IVTRVS+ D+ Q+ +Q F + AA+LGLLG+VPGMP+++ +L A + G Sbjct: 262 AAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMI-ILSAAAVAGFV 319 Query: 325 WWIRGREQK----------------APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 W + +K AP P + WN++ +LG+E+G Sbjct: 320 AWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSID-----------WNEISDGSALGLELG 368 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y L+ +VD ++ L+ RI IR++ ++EMGF+ P+V +RDN+ L P YRI + GV +G Sbjct: 369 YGLVGLVDERKGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMG 428 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 + +P + LA++ G G + G DP+FGL A+WI + A + GYTVV+ +TVV Sbjct: 429 EDECFPEQLLALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVV 488 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATHLN +I+ AA+LFG EAQ+LLD + + P+L L P ++L + + LL E Sbjct: 489 ATHLNQVIAATAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEG 548 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 VP++D R I E + + A +D L +R +G I Q P K + V+ LD LE Sbjct: 549 VPLKDFRRIAEAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLES 608 Query: 609 LLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR------PL- 657 LL QA++ G EP LA+R++A EA A P LVN A R P+ Sbjct: 609 LLAQAVRTSPGASHPFEPALANRIVAAISEA--------AMP--LVNSATRFAIVTSPIA 658 Query: 658 ---LSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 L+R L+ LP+ V+S LE+ D + + + A +GG Sbjct: 659 RRALARLLKPHLPETPVMSFLEIPDGKAVEVAAVVGG 695 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 301/676 (44%), Positives = 437/676 (64%), Gaps = 18/676 (2%) Query: 25 PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84 P++IL IL+M++LPLP +LD+LFTFNI L++MVLLVA+ +R LEF+ FPTILL TTL+ Sbjct: 20 PLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAKRPLEFSLFPTILLITTLM 79 Query: 85 RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144 RL LNVASTR++L+ GH GA AAGKV+E+FG ++GGNF +G VVF+IL+IINF+V+TKG Sbjct: 80 RLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVGFVVFIILMIINFIVVTKG 139 Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204 A RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V EADFYG+MDGASKF Sbjct: 140 AERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKF 199 Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264 VRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+TIGDGLVAQIP+L++STAA Sbjct: 200 VRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAA 259 Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 +IVTRVS + D+ + +QL ++PSV+ + ++ +L +VPGMP+L FLLF+A L Sbjct: 260 AIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTG 319 Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEA-----TWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 W + R Q A AE K ++ T+ E +W + L + + + +GY+L+ +VD Q Sbjct: 320 WRMSKRPQAAEAEEKSLETL-TRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQ 378 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 L RIR +R+ + G L P + IR+N L+P++Y I + G++ D + +A Sbjct: 379 GNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMA 438 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 + G + G DPA+G+ WI+ A K +A GY V+++++V+ATH+N ++ + Sbjct: 439 LPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSY 498 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 +LF + QL +R++ P+L EDL + + L KV + LL E V +RD+ TI Sbjct: 499 IPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIAT 557 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQ 615 L + + D L A VR+AL R+IT F K E+ V L+ LE LL QA Q Sbjct: 558 VLVASSTLTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNELENLLTNVVNQAQQ 616 Query: 616 GGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 G + +P + ++ + + + + G PVLLV LRPLL+R+ R P L Sbjct: 617 AGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPPQLRPLLARYARLFAPGL 676 Query: 670 VVLSNLELSDNRHIRM 685 VLS E+ D +++ Sbjct: 677 HVLSYNEVPDELELKI 692 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 311/671 (46%), Positives = 440/671 (65%), Gaps = 13/671 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++ IL +M++PLP F LD+L +I+LS+++L+ +MF LEF+ FP++LL TTLLRLA Sbjct: 28 VVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIFPSLLLVTTLLRLA 87 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNVASTR+IL+ G G AAG+V+ AFG F+VGG++ IG V+F+IL I+N VIT G R Sbjct: 88 LNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILFILNKNVITAGTTR 147 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR + +EADFYG+MDGA KFV G Sbjct: 148 IAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADFYGAMDGAGKFVSG 207 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 D AG+ I +INI+GGLLVG++Q M A +YTLLT+GDGLV+ IP++++STAAG+I Sbjct: 208 DVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVSTIPSIIVSTAAGII 267 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 V+R +++ +GE+ + QL N M L + VL L LVPG+P + FL+F+A L A + Sbjct: 268 VSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFLIFSASLFFFAKLL 327 Query: 328 RGRE-QKAPAEPKPVKMAENNTVVEA--TWNDVQL---EDSLGMEVGYRLIPMVDFQQDG 381 R+ +A + K ++ T +VQ D+L +EVGY LIP+VD +Q+G Sbjct: 328 GDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVGYGLIPLVDEEQNG 387 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ S + LA++ Sbjct: 388 NLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVASAEILIDHLLAMD 447 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 PGTA + G T +PAF L A+WI + KE+A + GYTVV+ STV+ATHL + +H + Sbjct: 448 PGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVIATHLTEVFRRHLS 507 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 E GRQE Q LLD +++ PK E+LVPGV++L + KVLQNL+ E V +RD+ +++ETL Sbjct: 508 EFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVRENVSVRDLLSVVETL 567 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL---QGGG 618 A++ P +P LT VR L R+I + + + +I LD +ER L ++ +GG Sbjct: 568 ADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVERTLQDSIRQTEGGA 627 Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P A RL+ + PV+L RP L++ L R LP + VLS E Sbjct: 628 YLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLMRFLPNIPVLSQAE 687 Query: 677 LSDNRHIRMTA 687 + + IR+ A Sbjct: 688 IPPD--IRLQA 696 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 299/671 (44%), Positives = 455/671 (67%), Gaps = 16/671 (2%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ + L F+ FP++LL TL R Sbjct: 21 IFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSVLLIVTLFR 80 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+LNVA+TR IL+ G G AAG+V+ +FG F+VGGN+ +GI++F+ILV+INFMVITKG+ Sbjct: 81 LSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLINFMVITKGS 140 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+MDGASKFV Sbjct: 141 GRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGAMDGASKFV 200 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 RGDAIAGI+I INI+GGLL+GV QH M G +A +T+LTIGDGLV+QIP+L+IST+AG Sbjct: 201 RGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPSLIISTSAG 260 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +IV+R D+ Q+ QLFS+ V+ ++ A+L LVPG+P + F+ A + L + Sbjct: 261 LIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIAALMFYLVY 320 Query: 326 ---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382 + +K E + + E ++ D + +E+G+ LIP+VD Q G Sbjct: 321 ISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPLVDTNQGGT 380 Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 LL RI++IR++ A EMGF+ P V IRDN+ L Y +++K V + +G +P ++L +NP Sbjct: 381 LLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFPEKYLIMNP 440 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 + G T +PAFGL A W++ +K+ A+++GYT+V+ STV+ATHL +I ++A E Sbjct: 441 EGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTEIIKKNAHE 500 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 L GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR+++T++E LA Sbjct: 501 LLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNLQTVMEVLA 560 Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG--- 619 +P L VR+ L R IT+ ++V L + +E++L +LQ Sbjct: 561 TFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSLQNTDDGQE 620 Query: 620 --LEPGLADRLLA----QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 ++P LA ++L+ +T+E +S+ G PP+++++ +R + RF+ + +P + ++S Sbjct: 621 IVIDPTLAQKILSGIMKKTEECVSK----GLPPLMIISPPIRLPMRRFVEKFVPNVNIMS 676 Query: 674 NLELSDNRHIR 684 + E+S++ I Sbjct: 677 HNEISESVRIE 687 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 288/653 (44%), Positives = 442/653 (67%), Gaps = 4/653 (0%) Query: 40 PAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILME 99 P F+LDL FTFNI SI++L+V++F + L+F++FPTILLF+TL RL+LN++STRIIL+ Sbjct: 46 PTFVLDLFFTFNIIFSIIILIVSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLN 105 Query: 100 GHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDG 159 GHTG+ +AG V+E+FG FL+ GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD Sbjct: 106 GHTGSCSAGHVIESFGFFLIRGNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDA 165 Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219 MPGKQMAIDADLN+GLI E +AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N Sbjct: 166 MPGKQMAIDADLNSGLISEKQAKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVN 225 Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVG 278 ++GGLL+G++Q+ MS+ A + Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++G Sbjct: 226 VIGGLLIGIVQYKMSLLKAIKIYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIG 285 Query: 279 EQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP 338 E+++ Q+F+N V+ S+ + GL+PGMPN +FL F+ L+W+I R+ Sbjct: 286 EKIIYQVFNNSKVIFFSSIIFCFFGLIPGMPNFIFLFFSVLFFILSWYINYRKN-INKNF 344 Query: 339 KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEM 398 + + ++ +WND++ ED L +E+ + ++ L+ +++ +RK AQ+ Sbjct: 345 SKILKFKKRKKIDISWNDIEFEDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDY 404 Query: 399 GFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPA 458 GFL P ++I N L +Y+I +KGVE+ SG + + L IN + G D Sbjct: 405 GFLLPEINIIHNSKLDRGQYKIFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSF 464 Query: 459 FGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQ 518 F WI +K+ + ++++ ++ + N +I + LFG QE QQLLDR++Q Sbjct: 465 FSFPVFWINPVIKDTLLNKKIVFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQ 524 Query: 519 EMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAV 577 PKL + L+P ++++ T +LQNLL + + I+D+RTI+ETL +++ +++ ELT + Sbjct: 525 HYPKLIDYLIPNLMSIITFQNILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNI 584 Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGGLEPGLADRLLAQTQEAL 636 +R+AL ITQ++F ++VIGL T E +LL+ + +EP +++L+ +T+ A+ Sbjct: 585 IRIALKEFITQKFFFKNKYINVIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAI 644 Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 Q+ P VLLVN +R LLS F L VLS E+S+NR I++T I Sbjct: 645 ILQKKNNLPVVLLVNPKIRVLLSNFFLNCNIILPVLSFSEISENRVIKITQFI 697 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 314/673 (46%), Positives = 442/673 (65%), Gaps = 25/673 (3%) Query: 26 ILILL----ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 ILIL+ IL +M++P+P +LDL NI S+++LLVAM T+ LEF FP+ILL + Sbjct: 23 ILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFPSILLLS 82 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RL+LNVASTR+IL+ G G AAG V+++FG F+VGG++A+G+V+F I V+INF+V+ Sbjct: 83 TLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVVINFVVV 142 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FYG+MDGA Sbjct: 143 TRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMDGA 202 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDA+A ILI+ +NI+GGL++G++ G+ + A +YTLLTIG+GLVAQ+PAL++S Sbjct: 203 SKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALIVS 262 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 AAG++VTR + D+G ++ Q+ + P + ++ +L LL ++PG+P+ F L A + Sbjct: 263 VAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLL-ASVT 321 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN-DVQLE-DSLGMEVGYRLIPMVDFQQ 379 GL + R +K A AE TV N + L D L + VGY L+ +V+ + Sbjct: 322 GLMAYRRTTLEKKKARE---LQAEEKTVPPPAENVETYLSLDLLELNVGYGLVDLVEGKA 378 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 L RIR IR++ AQEMG + P +HIRDN+ L+P Y +L+KG + + P LA Sbjct: 379 GSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSLLA 438 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 +NPG T+ G +P FGL A WI +E+ + QG+TVV+ TV++THL +I H Sbjct: 439 MNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIRSH 498 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 AAEL GRQE Q+LLD + ++ P+L EDLVPG V+L L VL LL E+V IRD+RTILE Sbjct: 499 AAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTILE 558 Query: 560 TLAEHAPIQSDPHELTAV---VRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL-QAL 614 +++ D ++T + VR ALGR+I + GK + V+ D E + + QA Sbjct: 559 AVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQAS 618 Query: 615 QGGGG----LEPGLADRLLA---QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 Q G LEPGLA +LL+ Q E+L R+ G PVLLV+ R + RFL R Sbjct: 619 QTPPGSPLVLEPGLAQKLLSGLGQVMESLGRK---GVQPVLLVSAQTRVPVRRFLERYFS 675 Query: 668 QLVVLSNLELSDN 680 L VLS +E+ + Sbjct: 676 SLPVLSPMEVPKD 688 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 319/661 (48%), Positives = 433/661 (65%), Gaps = 12/661 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 I+LIL +M++PLP F+LD+L NI +S+ +LL A + R LEFA FP +LL TTL RL+ Sbjct: 31 IVLILFVMLVPLPPFLLDVLLATNITISLAILLTAFYAARPLEFAIFPGLLLLTTLFRLS 90 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNVASTR+IL EG GA ++ AFG F+V GN+ +G ++F++LV+INF+VITKG+GR Sbjct: 91 LNVASTRLILSEGKAGA-----LISAFGQFVVAGNYVVGAIIFIVLVVINFVVITKGSGR 145 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD +PGKQMAIDADLNAGLI EDEA+KRR E+ +EADFYG+MDGASKFVRG Sbjct: 146 IAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIAREADFYGAMDGASKFVRG 205 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAG++I +NI+GG L+GV QHGMS AA+++ LL+IGDGLV+QIPAL+ISTAAG+I Sbjct: 206 DAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGDGLVSQIPALLISTAAGII 265 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 V+R S + ++ E+ QLF +L++ + L LLGLVPG+P + F L L L + Sbjct: 266 VSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLPLVPFWLLAGTTLLLGYQR 325 Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387 R E++ A+P + E ++ + D L +E+GY LIP+VD Q G+LL RI Sbjct: 326 RQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLELEIGYGLIPLVDPNQHGDLLDRI 385 Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447 + +R++ A E+G + P V IRDNM L RY I ++G + G+ PG +LA+ P Sbjct: 386 KVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGNPVAEGEVLPGYYLALLPEGLEE 445 Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507 T PG T DP FGL A+W+ A+ G TVVEA V+ THL ++ ++A L RQ Sbjct: 446 TPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAPAVITTHLLEVLRKNAHLLLDRQ 505 Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567 E ++LLD+V + P L E+L P ++++ + KVL+ LL E++PIRD+ +ILE LA+HA Sbjct: 506 EVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLLRERIPIRDLVSILEALADHATS 565 Query: 568 QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG------GLE 621 + LT VR AL IT+Q+ ++ LD LER LLQ + G GLE Sbjct: 566 TKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPILERHLLQQAEAGELHPGTLGLE 625 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS-NLELSDN 680 P ++R L + + R G PPVLL + LRP+L FL S+P L VLS N L D Sbjct: 626 PRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPVLYNFLAPSIPDLNVLSYNDLLPDT 685 Query: 681 R 681 R Sbjct: 686 R 686 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 310/681 (45%), Positives = 454/681 (66%), Gaps = 19/681 (2%) Query: 1 MSNLAAMLRLPANLKSTQW---QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57 M + + A++ ++W Q L GPI++++IL+M+V+PLP +LD+LFTFNI S++ Sbjct: 1 MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60 Query: 58 VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117 +L A +T++ L+F+AFPT+LL TLLRLALNVA+ R+IL++G+ G AAG V+E+FG F Sbjct: 61 ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120 Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177 +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180 Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237 +++AKKRR ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+ Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240 Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296 AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G + QLF N +L++A Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP-KPVKMAENNTVVEATWN 355 +LG+ G++PGMP+ FLL+ A L G W++ R + AE AE VVE + Sbjct: 301 IILGITGIIPGMPHWAFLLY-ALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPID 359 Query: 356 DVQLE--DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 L+ + +G+ +GY+LIP++ Q+DGEL R+ +R++ ++ GF+ P +H+ D++ L Sbjct: 360 ARVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTL 417 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 +P YRI + G+ G+ + + LAI G+ + G T DP +G A WI + Sbjct: 418 RPGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADD 477 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 A++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+ KL + ++P +VT Sbjct: 478 AELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVT 537 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593 L KVL++L+ E+V +RD+ ILE+LAE +L ++R LGR I G Sbjct: 538 APKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLG 597 Query: 594 KDE-------VHVIGLDTPLE--RLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGA 644 +D V +D+ L+ A LEP + L ++A+++ E Sbjct: 598 RDRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSM 657 Query: 645 PPVLLVNHALRPLLSRFLRRS 665 PV+LV A+R LS +LR + Sbjct: 658 RPVILVRDAIRYALSGWLRSA 678 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 316/669 (47%), Positives = 464/669 (69%), Gaps = 12/669 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 I+LIL M++P+P F+LDL T +I LSI+++LVA + ++ L+F+ FP++LL TL+RL+ Sbjct: 17 IILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVLLIATLMRLS 76 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LN+ASTR+IL G G AAGKV++AFG F+V GNF +G++VF+ILVIINF+VITKGAGR Sbjct: 77 LNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINFIVITKGAGR 136 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+MDGASKF+RG Sbjct: 137 IAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAMDGASKFIRG 196 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL+ STAAG++ Sbjct: 197 DAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPALITSTAAGIV 256 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 V+R +T+ ++G+ ++ QLF NP + ++ VL LLGL+PG+P+L F++ +A+ + Sbjct: 257 VSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAVVSGAIAYLM 316 Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387 +E+K P + E +EA + D + +E+GY LIP+V + + L+ RI Sbjct: 317 ISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLV--EGESSLVERI 374 Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI--NPGTA 445 RS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + + GR+LAI PG Sbjct: 375 RSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFLAIGARPGQD 434 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 +P T DPAFG++A+WIE +AQ+ G+TVV+AS+V+ THL ++ + EL G Sbjct: 435 IDGIP---TKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKNYGYELLG 491 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 +QE Q+LLD +A+ P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TILETL+E+A Sbjct: 492 KQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTILETLSEYA 551 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG-----GGGL 620 + DP LT VR AL R IT+ + I + LER +++LQ Sbjct: 552 NVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTPQGINFAT 611 Query: 621 EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 +P L ++ + ++ + G PVL+ + ++R + R + R P L VLS E++ Sbjct: 612 DPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLSPQEIAPG 671 Query: 681 RHIRMTATI 689 I M T+ Sbjct: 672 VKILMFGTV 680 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 290/684 (42%), Positives = 434/684 (63%), Gaps = 29/684 (4%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+ T+R L+F+ FPT+LL Sbjct: 14 LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRVLDFSVFPTLLLIA 73 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL+RL LNVASTRI+L+EGH G AAG V++AFG ++GGN+ +G+VVF+IL+IINF+VI Sbjct: 74 TLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMVVFIILMIINFVVI 133 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR E EA+FYGSMDGA Sbjct: 134 TKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQETGDEAEFYGSMDGA 193 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDAIAG+LI+ IN++GG+L+G+ H MS + +++ LLTIGDG+VAQIP+L+++ Sbjct: 194 SKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIGDGIVAQIPSLLLA 253 Query: 262 TAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 T+A VIVTRVS +D D+ + + Q+ S PSV+ SA V+ ++GLVP MP+L FL+F A L Sbjct: 254 TSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNMPHLPFLIF-AAL 312 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEA---------TWNDVQLEDSLGMEVGYRL 371 LG W + + Q+ ++ E N V W V + + + +G++L Sbjct: 313 LGFVGWQQSKIQEES------QLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITLTLGFKL 366 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 + +++ + LL I+ RK ++E+GFL P V IRDN+ L+P Y I + G E+ G Sbjct: 367 VSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDGEEMERGT 426 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 G +A++ + G++ G DPA+ + A+WI K A GY V+ + V+ATH Sbjct: 427 VKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLADVIATH 486 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 +N ++S + A +F + + + D++ P+L+E L V L ++++NLL ++VP+ Sbjct: 487 INKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQL-QIIKNLLIDQVPV 545 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 ++ + I T+ + DP +++ VR AL R I P + + L + L+ +L Sbjct: 546 KNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSELDNILR 605 Query: 612 QALQGGGGLEPGLA-------DRLLAQTQEALSR--QEML--GAPPVLLVNHALRPLLSR 660 A+ P + LLAQ Q+ L Q+M+ G P+LLV+ +RP++S+ Sbjct: 606 NAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTVRPMMSK 665 Query: 661 FLRRSLPQLVVLSNLELSDNRHIR 684 F R L+VLS E++D+ I Sbjct: 666 FSRAFSRDLIVLSFNEIADDYQIN 689 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 302/674 (44%), Positives = 452/674 (67%), Gaps = 17/674 (2%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I +L +L +M++PLP +++D++ NI + +++LL A++ + LEF+ FP++LL TTL R Sbjct: 22 ISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVFPSLLLLTTLFR 81 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+LNVA+TR+IL+ G G AAAG V+E FG F+VGGN +G+++F+ILV+INF+VI+KG+ Sbjct: 82 LSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILVLINFVVISKGS 141 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR V +EA+FYG+MDGASKFV Sbjct: 142 TRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEFYGAMDGASKFV 201 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 RGDA+AG++I VIN+VGGL++GV+QHGMS+ A ++LLT+GDGLV+QIPALVISTAAG Sbjct: 202 RGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQIPALVISTAAG 261 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +I+TR S+++ + ++ Q ++P V ++A L L+ LVPG+P + FL+ + GL + Sbjct: 262 IIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFLILSLGLGASGY 321 Query: 326 WIR-GREQKAPAEPKPVKMAENNTVV-----EATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 +++ G++QK +AE+ T + E +D+ +ED + +E+GY LI MV+ + Sbjct: 322 YLQLGQQQKGLE-----TIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLIDMVEGGR 376 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 +G LL R++ +R++ QE+GF+ P VHI+DN+ L + Y+IL++G +G G+ P LA Sbjct: 377 EGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIRPRNLLA 436 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 + + + G AT +PAFGL A+WI ++QA++ GYTVVE +TV+ THL L+ Sbjct: 437 LESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLTELLRGQ 496 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 AAE+ R + LL++ AQ PK+ E++VP V + L VLQ LL E VPIRD+ ILE Sbjct: 497 AAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRDLMLILE 556 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGG 617 L++HA +L VR LGR ITQ++ + E+ V LD LE+ + + + Q G Sbjct: 557 ALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSERMSQQQG 616 Query: 618 GGLEPGLAD--RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675 L + + R +++ E S ++ PVLL LR L+R LR+ + ++ VLS Sbjct: 617 WALPLDMPEWQRFISRVNEISSHFDV--DIPVLLTTPQLRGHLTRALRKVMTRIAVLSIA 674 Query: 676 ELSDNRHIRMTATI 689 E+ +I+ A + Sbjct: 675 EIPPQTNIQSLAKV 688 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 301/682 (44%), Positives = 442/682 (64%), Gaps = 34/682 (4%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 +L++LI+ MM++PLP ++LD+L NI +++LL + ++ LE AAFPTILL TL R Sbjct: 21 VLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAFPTILLMATLFR 80 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 LALNV++TR++L+ G+ AG+++ AFG+F+VGGN+ +G VVF+ILVII F+VITKGA Sbjct: 81 LALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILVIIQFLVITKGA 135 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADFYG+MDGASKFV Sbjct: 136 ERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADFYGAMDGASKFV 195 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAG++I INI+GGL +GVLQ GM + A +Y+LLT+GDGLVAQIPAL++STA G Sbjct: 196 KGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQIPALLLSTATG 255 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +IVTR + + D+G MV + N + + + +L L +VPG+P + F L + + +A+ Sbjct: 256 IIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFALLGSAMAAMAY 315 Query: 326 WIR----------GREQKAPAEPKPVKMAENNTVVEATWNDVQLE----DSLGMEVGYRL 371 I+ GR + +P +PK A + + + L D + +E+GY L Sbjct: 316 GIQREAAEAEVPAGRGEGSP-QPKGAPGAPSAPPSAPSGPENVLPLLTVDPMEVEIGYAL 374 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 IP+VD Q G++L RI +IR++ A ++G + P + IRDN+ L+P Y I +KG E+G G+ Sbjct: 375 IPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIRVKGAEVGRGE 434 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 P +LA++ G L G T +PAFGL A+WI +++QA+ GYTVV+ +V+ATH Sbjct: 435 LLPDHYLAMSTG-GEDLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTVVDCPSVLATH 493 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L+ +I ++ A+L RQE Q+L+D VA+ P +T+DL+ V++L + KVLQ L+ E+V I Sbjct: 494 LSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVLQGLIREQVSI 552 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT---PLER 608 RD+ T+ ETLA+H P L VR AL R IT + +D+ V+G+ T E+ Sbjct: 553 RDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKL---QDQDGVLGVYTLSPRWEQ 609 Query: 609 LLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 + + ++G + P L+ A M G PVLL + +R ++ R + Sbjct: 610 RIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVRLVVRRIV 669 Query: 663 RRSLPQLVVLSNLELSDNRHIR 684 SLPQL V+S E++ + +R Sbjct: 670 EGSLPQLFVVSYNEIAPSTQLR 691 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/671 (43%), Positives = 435/671 (64%), Gaps = 16/671 (2%) Query: 25 PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84 P ++ I+ MMV+PLP +LD+L NI +++VLLV+MF +R L+FAAFP++LL TL Sbjct: 40 PAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRPLDFAAFPSLLLIATLF 99 Query: 85 RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144 RLALN++ TR++L+ G+ AGKVV++FGHF+VGG+ +G+V+F+I++II F+VIT G Sbjct: 100 RLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLVIFLIILIIQFVVITNG 154 Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204 AGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+ EADFYG+MDGASKF Sbjct: 155 AGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEADFYGAMDGASKF 214 Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264 V+GDAIA ++I +N++GGL +G+LQ +S+G A +Y+LL++GDGLV+QIPAL++S + Sbjct: 215 VKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVSQIPALLLSVST 274 Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 G+IVTR +++ D+G ++ Q+ S + + A + ++ L+PG+P L FL+ L L Sbjct: 275 GLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPFLILGGAALALG 334 Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384 ++ + A +P A EA ++++E L + + + L+ +VD + GELL Sbjct: 335 MRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEMRVE-PLELNLAFDLVDLVDQSRGGELL 393 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 R+R++R+K A E+G + P+V RDN+DL P Y I + GVE+ G+A PG LAI G Sbjct: 394 ERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEAPPGAMLAI--GE 451 Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504 LPG AT++P FGL W+ L++QA++ G TVV+ ++V+ THL ++ +AA+L Sbjct: 452 NLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHLAEVVRDNAAKLL 511 Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564 R++ + L + + P + E+L P ++ L + +VLQ LLDE VPIRD+ I E L++ Sbjct: 512 SREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIRDLPRIFEALSQR 571 Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERLLLQALQGGG----- 618 A + DP L R LG AI+ + +D + V+ +D E+ L+ L+ G Sbjct: 572 ARVSQDPEGLIEAARATLGPAISAAY--AQDGRLSVLTIDPLTEQRLVDKLRHGEHGSFL 629 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 L+P A+ L+ + + R E LG PVL LRP L R +R + P+L VL+ EL Sbjct: 630 ALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVRSANPRLPVLAYGELG 689 Query: 679 DNRHIRMTATI 689 + + T+ Sbjct: 690 PHLQLETVGTV 700 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 294/675 (43%), Positives = 452/675 (66%), Gaps = 10/675 (1%) Query: 19 WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78 W ILA ++LILS +++P+PA +LDLL T +I S+ VLL+ F + LEF++FP++L Sbjct: 7 WIILA----VVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVL 62 Query: 79 LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138 L TLLRL+LN+A+ R IL+ GH G AAGKV+EAFG + GG+ +G++VF+I ++INF Sbjct: 63 LLGTLLRLSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVINF 122 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 +VITKGA RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY +M Sbjct: 123 IVITKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAM 182 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGASKF+RGDAIA ++I+ +++VGGLL+G+ GM + A ++YT+L+IG+GL +Q+PAL Sbjct: 183 DGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPAL 242 Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318 ++STAAGV+ T++S+ +++GE + +L P +L SA VLG +GL+PG+P L FL +A Sbjct: 243 LLSTAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSA 302 Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQLEDSLGMEVGYRLIPMVD 376 L G A+++ + K + K+A+ T + + + + + +E+GY LIP+VD Sbjct: 303 ILAG-AYYLVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVD 361 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436 Q G++ +I+++RK+ A+E G + P++HIRDN+ L+P YRIL+KG+EI + PG Sbjct: 362 ESQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGH 421 Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 +LA+N G A G + G T DPAF + A WI KE+AQ GY VV+A TV+ THL+ +I Sbjct: 422 YLAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVI 481 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 ++ EL R E +L++ ++++ PK+ +++VP V ++ +H+VLQNLL E +P+ D+ T Sbjct: 482 KRNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLT 541 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616 ILETLA++ DP LT VR AL + IT+ + ++ I L +E L++ L+ Sbjct: 542 ILETLADYIEQTKDPDLLTEYVRQALSKRITRMYLTN-GTLYAIALSPKVEAKLVKFLKE 600 Query: 617 GGGLE--PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 E + + LL + + + + GA PVLL + +R + + + L +L VLS Sbjct: 601 NREDEFIDYVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSY 660 Query: 675 LELSDNRHIRMTATI 689 EL +I++ + Sbjct: 661 NELEKQVNIKIIGIV 675 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 303/665 (45%), Positives = 433/665 (65%), Gaps = 18/665 (2%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 I+ IL MMV+PLP+++LDL +IALS+ VLL + + +R LEFA FP +LL TTL RL+ Sbjct: 5 IVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTLFRLS 64 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNVASTR+IL G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITKG R Sbjct: 65 LNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITKGTER 119 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 I+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+KFVRG Sbjct: 120 ISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATKFVRG 179 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 +A+AGILI IN+VGGL++GV Q M +G AA ++ LL+IGDGLV+QIPAL++STAAG+I Sbjct: 180 EAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTAAGII 239 Query: 268 VTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW 326 V+R S ++ + +M QL P +L++ LG++G VPG+P + F L +AG+L L W+ Sbjct: 240 VSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVL-LLWY 298 Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATW-----NDVQLEDSLGMEVGYRLIPMVDFQQDG 381 +R +E+KA E + + E +D+ L D L +E+GY LI +VD Q G Sbjct: 299 LRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPDQGG 358 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 +LL R++ +RK+ A+EMG + P V IRDN+D+ +Y I ++G IG G PG LA+ Sbjct: 359 DLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKLALL 418 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 P G DP FGL A+W+ +A+ G TV+E V++THL + ++A Sbjct: 419 PDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRKNAY 478 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 L RQE +++LD+V + P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TILETL Sbjct: 479 RLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTILETL 538 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618 A+HA LT R AL IT+++ + + +D LE+ LL+ + GG Sbjct: 539 ADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGGLDA 598 Query: 619 ---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675 GL+P AD L+ E + P+LL++ LR + +FL + + VLS Sbjct: 599 NTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVLSYN 658 Query: 676 ELSDN 680 +L+ + Sbjct: 659 DLTPD 663 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust. Identities = 291/659 (44%), Positives = 441/659 (66%), Gaps = 12/659 (1%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 M+LP+P F LDLL T +I S+++L+ ++ LE A+FP++LL TL RLALN+A+TR Sbjct: 31 MILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIASFPSLLLLATLFRLALNIATTR 90 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 IL+ GH G AAGK++E+FG F+VGGN+ +GI++FVILV INF+V+TKG RI+EVGAR Sbjct: 91 RILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVILVTINFIVVTKGTERISEVGAR 150 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD MPGKQMAIDADLNAGLI E EA++RR + +EADFYG+MDGASKF+RGDAIAGI+ Sbjct: 151 FTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEADFYGAMDGASKFIRGDAIAGII 210 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274 I INI+GG+ +GVLQHGM + AA ++TLLT+GDGLV+QIP+L+ STAAG++VTR ++ Sbjct: 211 ITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLVSQIPSLITSTAAGLMVTRAVSE 270 Query: 275 QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA 334 ++G+++ +QL S P + ++A L ++G VPGMP + F + AG++ L ++ E K Sbjct: 271 TNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIPFTIL-AGMIALTAYMMQLEMKR 329 Query: 335 PAEPKPVKMAE---NNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIR 391 K + + V E+ + +++ E+GY LIP+VD ++ GELL RI+S+R Sbjct: 330 ETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYGLIPLVDEEKGGELLKRIKSLR 389 Query: 392 KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG 451 K+ ++E+G + P++HI+DN++L+ YRIL+KGVE+ PG+ LAI+ G G L G Sbjct: 390 KQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARYQIEPGKMLAIDTGQTNGKLEG 449 Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511 T +P FGL A WI+ + K++A++ G+TVV+ TV+ THL+ +I Q+A E+ GR E ++ Sbjct: 450 VETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIITHLSEIIKQNAHEILGRSETKE 509 Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571 L+D++ Q+ P + +++VP V LH+VLQNLL E +PI+D+ TI+E+L+++ D Sbjct: 510 LVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIPIKDLLTIIESLSDNITKTEDT 568 Query: 572 HELTAVVRVALGRAITQQWFPGKDEV-HVIGLDTPLERLLLQALQGGGG----LEPGLAD 626 LT +VR +L R IT + KD V + + LD E L ++ G ++P Sbjct: 569 DILTELVRESLARLITSIY--AKDGVLYALTLDPASEEKLYAKIKEYNGNLPPIDPAKLQ 626 Query: 627 RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685 + Q + + + + PVLL + +R + + + + + VLS E+ +++ Sbjct: 627 SFIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYMSNVAVLSYNEVDPKTKLKI 685 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 292/673 (43%), Positives = 435/673 (64%), Gaps = 17/673 (2%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 LK T ++ + +L + M+V+P+P +LD+L FN+ +S+ +LLVAM T LEF+ Sbjct: 5 LKRTDLMVM---LFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSI 61 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FP++LL TTL RL+LN+++TR+IL +G+ GA V++ FG+F++G N +G +VF+I+ Sbjct: 62 FPSLLLVTTLYRLSLNISTTRLILSQGNAGA-----VIQTFGNFVIGNNPVVGFIVFLII 116 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 +I+ ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEAD Sbjct: 117 IIVQYVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEAD 176 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 FYG+MDGASKFV+GDAIA ++I+ IN+V GL++GV S A +YT+L++GDGLV+ Sbjct: 177 FYGAMDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVS 236 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 QIPAL++STA G++V+R +TDQ++G +V Q+F + + + + LLGL+ + L Sbjct: 237 QIPALLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPV 296 Query: 314 LLFTAG---LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370 + G + A R +QK E K + E + + +E + E GY Sbjct: 297 IPIAGGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVE-PVEFEFGYG 355 Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430 LIP+VD +Q G+ + R+ IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+ G Sbjct: 356 LIPLVDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARG 415 Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 + G WLA++PG + G T DP FGL A+W+ +K +A+ GYTVV+ +V+AT Sbjct: 416 EILMGHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMAT 475 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 HL ++ +HA EL GRQ+ ++LL+ + Q P + ED+ PG ++L + +VL NLL+E VP Sbjct: 476 HLTEVLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVP 535 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610 IRD+ TILE LA+ D +LT VR L R I Q+ G+D + V+ D LER + Sbjct: 536 IRDLVTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREM 595 Query: 611 LQAL--QGGG---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665 QA+ QGG GLEP A + + +E + + G PVLLV+ +R LSR +RR Sbjct: 596 QQAVVEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRY 655 Query: 666 LPQLVVLSNLELS 678 +P L VLS EL Sbjct: 656 VPDLPVLSFAELD 668 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 291/682 (42%), Positives = 437/682 (64%), Gaps = 20/682 (2%) Query: 13 NLKSTQWQILA-GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 NLK I+A G + I+L MM++PLP FILD+L NI+LS+++LL+ +FT L+ Sbjct: 5 NLKENMDVIVAFGVVGIVL---MMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDL 61 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 + FPT+LL TTL RL LN++STR+IL +G+ AG+V+EAFG F+VGGN+ +GI++F+ Sbjct: 62 SIFPTVLLVTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFL 116 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 I++I+ F+VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I + A+KRR E+ QE Sbjct: 117 IILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQE 176 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 ADFYGSMDGA+KFV+GDAIAG+++ INI+GG+++G + M++ AA++Y LTIGDGL Sbjct: 177 ADFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGL 236 Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 V+QIPAL+IST+AG+IVTR STD++ G + QL + P ++++ VL +LG++PG+P Sbjct: 237 VSQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKP 296 Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAE----PKPVKMAENNTVVEATWNDVQLEDSLGMEV 367 F G + +++ GRE+K E KP + + VE N + +E S+ +E+ Sbjct: 297 AFFSLGIGAIAAGYFL-GREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLINVE-SIEVEI 354 Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427 GY LI + D G+LL RI SIR++ A +MG + + IRDN+ L P +Y I +KG + Sbjct: 355 GYGLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVV 414 Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487 G + P L ++P ++ G T++P FG+ A+WIES E A+I+GYTVV++ST+ Sbjct: 415 GGYEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTI 474 Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 + THL +I +A EL GRQE + ++D + + ++L+P ++TL + KVL+NLL E Sbjct: 475 LITHLLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLRE 534 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 KV I+D TILETLA+ + D LT VR+AL R+I + V L E Sbjct: 535 KVNIKDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETE 594 Query: 608 RLLLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 L+ LQ ++P +++ QE ++ PV++V+ +R + + Sbjct: 595 ELVSNNLQRSVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLV 654 Query: 663 RRSLPQLVVLSNLELSDNRHIR 684 P L VLS E+ ++ I+ Sbjct: 655 EIVYPNLTVLSLNEIPNDIKIK 676 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 313/690 (45%), Positives = 432/690 (62%), Gaps = 38/690 (5%) Query: 25 PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84 P+ IL +++MMVLPLP +LDL F NI LS+++L+VA+ T R L+F++FP+ILL T+L Sbjct: 20 PLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFPSILLVATVL 79 Query: 85 RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144 RLALNVASTRI+L GHTG AAGKV+EAFG F++GGNF +G VF ILVIIN +VITKG Sbjct: 80 RLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVIINLVVITKG 139 Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204 AGR++EV ARF LD MPGKQMAIDADLNAGL+ DEA++RR++V EADFYG+MDGASKF Sbjct: 140 AGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFYGAMDGASKF 199 Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264 V+GDA+AGILI++INIVGG+++G LQHG+ + AAE+Y LL+IGDGLVAQIP+L++S A Sbjct: 200 VKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQIPSLLLSIAT 259 Query: 265 GVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 +IVTRVS+ D +G+QM P AAV+ +LGL PGMPNL+FLL Sbjct: 260 AIIVTRVSSTTDMSVLIGKQMGIGRAWVP-----VAAVMLILGLTPGMPNLLFLLGGVAA 314 Query: 321 LGLAWWIRGREQ----------------KAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364 +AW RE +A A P P + T DV + Sbjct: 315 AAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAI---------TTEDVTDYAPIS 365 Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 +++GY LIP+ G L+ RI +IR+ ++ +GF+ P V IRD++ L P +YRI + Sbjct: 366 LQIGYGLIPLAG-DNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQ 424 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 + YP R LA+ G + L G A DP+FGL A WI +A+ + VVE Sbjct: 425 AILAEDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEP 484 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 +V+ATHL+ ++ +HAA+L G+ + Q L+D + + P L + +VP +V L L VL+ L Sbjct: 485 ESVIATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKAL 544 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 L +++P+ DMR ILE L++ A P E+ +R AL + QQ P + +I L+ Sbjct: 545 LADRIPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEP 604 Query: 605 PLERLLLQALQGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661 LE+LLL++ + G + + GLA LL E L G ++V LR + F Sbjct: 605 DLEQLLLRSRRQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAF 664 Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 +R LP VV+ EL + R + + T+GG Sbjct: 665 VRPHLPDAVVIGMGELPEARRVEVLGTVGG 694 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 301/682 (44%), Positives = 430/682 (63%), Gaps = 15/682 (2%) Query: 5 AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64 +A L +PAN + +A ++++L ++++V+PLP +LDL +I LS++VLLV++ Sbjct: 3 SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62 Query: 65 TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124 T L+F++FP +LL TL R+ L+V+STR+IL E H AGKV+EAFG F++GGN+A Sbjct: 63 TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117 Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184 +GIV+F+IL INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177 Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244 R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+ Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237 Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 LT+GDGLV Q+PAL+ISTAAG++VT + + +G + QL ++P M ++A VLG L Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKA---PAEPKPVKMAENNTVVEATWNDVQLED 361 +PG+P FL AG LA E + PV+M E + + +Q+ D Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQI-D 356 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 + +EVGY LIP++D Q G+LL RI +RK+ A E+G L P + IRD++ L Y I Sbjct: 357 PIELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIK 416 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 ++G E+ + P +A+N G+ + G TVDP+FG+ A W+ SA + +A+ GY V Sbjct: 417 LRGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVV 476 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 VE +TVVATHL + A+EL GRQE Q++++ + + P L E+++PG V+L+ LH+VL Sbjct: 477 VEPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVL 536 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q LL E+VPIRD+ TILE L + A DP LT V R AL I + + V I Sbjct: 537 QRLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGIT 596 Query: 602 LDTPLERLLL------QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 + LE L+ + L P +L + + G P L+ +LR Sbjct: 597 IGGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLR 656 Query: 656 PLLSRFLRRSLPQLVVLSNLEL 677 + R + LP L V+S EL Sbjct: 657 VGVRRLIEPVLPSLPVISLAEL 678 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/668 (42%), Positives = 432/668 (64%), Gaps = 24/668 (3%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP F+LD+L FNI+LS+++LLVA+ T+ L+F+ FPT+LL TL RL L+V++TR IL Sbjct: 22 PLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTMLLLVTLFRLGLSVSTTRSIL 81 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 G A AG V++ FG F++GGN +G +VF+IL++I F+VITKGA R++EVGARF L Sbjct: 82 -----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQFIVITKGAERVSEVGARFTL 136 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQM+IDADLNAGLI + EAK+RR ++ EADFYGSMDGASKFV+GDAIA I+I++ Sbjct: 137 DAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGSMDGASKFVKGDAIASIIIVI 196 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277 IN++GGL++G++Q GM M AA +YTLLT+GDGLV QIPAL+ISTA GVIVT+ +++ ++ Sbjct: 197 INMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPALLISTATGVIVTKAASEGNL 256 Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA- 336 + Q+ + P ++ ++AA + LLGL + +V AGLL A + + A A Sbjct: 257 STDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSI-AGLLAFAGYRLSKASLAKAN 315 Query: 337 -------EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRS 389 E P + + +VV+ +Q+ D + E GY LIP+ D Q G+LL R+ Sbjct: 316 FEEALLEEAPPEEPSGPESVVQL----LQM-DPIEFEFGYGLIPLADANQGGDLLDRVVM 370 Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449 IRK+ A E+G + PV+ IRDN+ L+P Y I +KG + G+ ++A++ G ++ Sbjct: 371 IRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLDHYMAMSTGEQDDSI 430 Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509 G T++PAFGL A+W++ ++++A++ GYTVV+ TV++THL ++ HA EL GR+E Sbjct: 431 VGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEVLKAHAYELLGREET 490 Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569 +QL+D + + P L E++ P +T + KVL+NLL E++ IR++ I E LA++ P+ Sbjct: 491 KQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLPVIFEALADYGPLTK 550 Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGG----LEPGL 624 D + +T VR AL R IT Q G +E+ VI L +E+ + A+ Q G L P Sbjct: 551 DMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIGQNENGSFLALAPAD 610 Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 + +L T + + + LG V+L + A+R + + + R LP + V+S EL + ++ Sbjct: 611 SQAILQNTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVPVVSYNELEPDVEVQ 670 Query: 685 MTATIGGK 692 + + Sbjct: 671 SVGVVNAE 678 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 281/648 (43%), Positives = 415/648 (64%), Gaps = 16/648 (2%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 P+P +LD+L T +I+ +++ L++++FT+ L+F+ P+++L TL RL+LNV +TR+IL Sbjct: 31 PIPPLMLDILLTISISAAVLTLMISVFTKDPLDFSVLPSLILILTLFRLSLNVTTTRLIL 90 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 EGH AG+V++ FG F+V G+ +G ++F ILV++NF+VITKG+ R++EVGARF L Sbjct: 91 GEGH-----AGEVIQQFGEFVVKGSAVVGFIIFAILVVVNFIVITKGSERVSEVGARFTL 145 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQM+IDADLNAG+I E +A+ RR ++ EADFYG+MDGASKFV+GDAIA I+I+ Sbjct: 146 DAMPGKQMSIDADLNAGMITETQARDRRQKIQAEADFYGAMDGASKFVKGDAIAAIIILF 205 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277 INI+GG + GV+ GM + A +YTLLTIGDGLV QIPAL++STA G++VTR +++ ++ Sbjct: 206 INIIGGFVTGVVMRGMDIMEALHTYTLLTIGDGLVTQIPALLMSTATGLVVTRAASETNL 265 Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337 GE + QLF P + ++A V +L + G+P L L+ L+ L + QKA E Sbjct: 266 GEDLSRQLFHTPKALYITAGVAMVLAMF-GLPLLPLLIVAIVLVALGRVMDKGSQKAVVE 324 Query: 338 PKPVKMA---ENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394 E + E N + + D++ +E+GY LI +VD QQ G+LL RI IR++ Sbjct: 325 ESAAARETALEESKKPENVLNLLNV-DNMELELGYALIALVDVQQGGDLLDRIVLIRRQV 383 Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454 A E+GF+ PV+ +RDNM+LQP +Y I ++G E+ G+ +LA++ G +PG T Sbjct: 384 ASELGFIVPVIRVRDNMNLQPNQYSIKIRGAEVAGGEILADHYLAMSSGLGDDNIPGIPT 443 Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514 +PAFGL+A WI + +E+ ++ G TVV+A TV+ATHL +I +A E+ RQ+ + LLD Sbjct: 444 KEPAFGLDAKWINAVYREEVEMNGGTVVDAPTVLATHLTEVIKSNAWEILSRQDVKTLLD 503 Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574 ++ P +D + + L L KVL NLL E+V IRDM TILETLA++A D L Sbjct: 504 HAREQAPAAVDDAMEH-LDLGHLQKVLANLLRERVSIRDMVTILETLADYASTTKDLDRL 562 Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLL 629 T VR +L R I Q ++ V+ L+ LE+L+L ++Q L+P + L+ Sbjct: 563 TEYVRQSLARQIVQPLLGMDKQLPVLTLEPKLEQLILDSIQPSDFGSYMTLDPRVLQELM 622 Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677 + + + G PVL+ +R L R R LPQL+VLS EL Sbjct: 623 QSLAREMEKMVLKGYNPVLVCAPVVRINLKRVTERQLPQLMVLSYNEL 670 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/661 (43%), Positives = 446/661 (67%), Gaps = 17/661 (2%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++ I ++++P+P FI+DLL T NI+L +++LLV++ + L+ ++FP+ILLF TL RLA Sbjct: 29 VISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALDLSSFPSILLFMTLFRLA 88 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNVASTR IL++G+ GKV+ AFG F+VGGN +G+VVF+I+V+I F+VITKGA R Sbjct: 89 LNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVFLIIVVIQFIVITKGATR 143 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 I EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++EA+FYG+MDGA KFV G Sbjct: 144 IGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSREAEFYGAMDGAGKFVSG 203 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DA+AGI+I++INI+GG+++G ++ GMS+ A + YTLLT+GDGLV+QIP+ +I+TA+ VI Sbjct: 204 DAVAGIIIVLINIIGGIVMG-MRSGMSVSEAMQHYTLLTVGDGLVSQIPSFIIATASAVI 262 Query: 268 VTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW 326 VT+ S T +++G + QLFS P+ + + +L L +VPG+P + FL+ AG + ++ Sbjct: 263 VTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPKIPFLVL-AGFFWMMFF 321 Query: 327 IRGREQK----APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382 + R K A A K + E + + D + +EVGY+L+P+VD ++G Sbjct: 322 VLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELEVGYKLVPLVDPNKNGG 381 Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 +L RI ++R + A++MG + P + +RDN+ L+ +Y + ++G EI G+ G +LAI+ Sbjct: 382 ILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQEIAHGELLTGSYLAIDS 441 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 G + G T+DPA+GL A+WI A+KE A+ GYTVV+ ++V+ THL +I HA E Sbjct: 442 GAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPASVMITHLTEIIKTHAYE 501 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 + R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL E+VPIRD+ +ILET+A Sbjct: 502 ILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLKEQVPIRDLSSILETIA 561 Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL---QGGG- 618 ++AP D +LT VR L R I +++ + ++ VI D LE+ + A+ + G Sbjct: 562 DYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHLEQTIANAIHKTEKGNL 621 Query: 619 -GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677 L+P +A +++ + E + G VLL + ++R + R + +LPQL VLS E+ Sbjct: 622 LALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRLIENALPQLAVLSYKEI 681 Query: 678 S 678 S Sbjct: 682 S 682 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/675 (41%), Positives = 419/675 (62%), Gaps = 10/675 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P IL I+ +MV+P+PA +LD+ NIALS+ VL+ AM Q+ L+F++FP++LLF Sbjct: 11 LALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFSSFPSVLLFA 70 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+IL+IIN MV+ Sbjct: 71 TLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLILMIINLMVV 130 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGAGR++EV ARF LD +PGKQMAIDADL AGL+ DEAK RR E+ EADFYGSMDGA Sbjct: 131 TKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEADFYGSMDGA 190 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFV+GDA+A +LI++IN++ GL++G+ HG++ G AAE+Y L +GD LVA +PAL++S Sbjct: 191 SKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALVASVPALLLS 250 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 AA VIVTRVS +D+ Q+ QL ++P + L A +L ++G +P MP + L ++G Sbjct: 251 IAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSIILPLSSGTF 309 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 L + +R + P+P + + + T +V + + +++GY LI + D ++ Sbjct: 310 YLWFRLRKNHEARKEMPEPEAKPDPSHI---TIEEVTDQTLVTVQLGYGLISLTDDKRGA 366 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 L+ R+ +RK+ Q GF+ P I D+ +L P YRI + G +G G PG LAI+ Sbjct: 367 RLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKINPGHLLAID 426 Query: 442 PGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 G G T+PG TVDP+FG A+WIE ++ A +GY V+ +V+AT ++ L+ Sbjct: 427 TGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIATQVHQLLGAR 486 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 A +L G + + L++ + +L + + P ++L L ++L++LL + + +R + Sbjct: 487 AQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGISLRHALRVFS 546 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 +++ A ++ L +VR LG I + P ++ VI L LE ++ LQ Sbjct: 547 SISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMVTGGLQDPSS 606 Query: 620 ----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675 +EP LA + + + +++ P L+V R LS LR PQ +VLS Sbjct: 607 GEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRAPQCLVLSIN 666 Query: 676 ELSDNRHIRMTATIG 690 EL + I + A +G Sbjct: 667 ELPVAQPIEVIAVVG 681 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 296/727 (40%), Positives = 441/727 (60%), Gaps = 42/727 (5%) Query: 2 SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 S LA P + Q + LA + ++ IL+++++PLP F+LD L T +IALS++++L+ Sbjct: 6 SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 ++ + +F+AFPT+LL TL RLALNVA+TR+IL +G+ G +A ++ AFG F V G Sbjct: 66 GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q MS+ +A + Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +T+LTIGDGLV QIPAL+I+TA G++ TR + ++D +++ QL + +++ A L Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA------------------PAEPKPV 341 L +PG+P L F L W+ RE K +P Sbjct: 306 LLFATIPGLPTFS-LAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSS 364 Query: 342 KMAENN-TVVEATWNDVQLEDS-----------LGMEVGYRLIPMVDFQQDGELLGRIRS 389 K+ + T T +++ E+ L + +GY+LI + D +Q G+LL RIR Sbjct: 365 KIKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRG 424 Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449 IRKK A + GFL P + IRDN+ L P Y I +KG+ IG G P ++LA+N G + Sbjct: 425 IRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREI 484 Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509 G T +PAFG++A+WI++ KE+A IQGYT+++ STV+ATH + L+ ++A + + E Sbjct: 485 EGIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEV 544 Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQ 568 + LL+R+A++ P + E+ + + VLQ LL EK+PI+DM TILET+ + AP +Q Sbjct: 545 KSLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQ 602 Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPG 623 +D + LT VR L R IT + + + T E+ LL L+ G L G Sbjct: 603 NDVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVG 662 Query: 624 LADRLL-AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682 +L+ ++EA+ + AP +L+V LR LS + ++ +VVLS+ EL N + Sbjct: 663 ELQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSN 722 Query: 683 IRMTATI 689 TI Sbjct: 723 FEALGTI 729 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 260/663 (39%), Positives = 415/663 (62%), Gaps = 20/663 (3%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 ++P+P+F+LD++ FN+++++++L +F + L+ + FPT+LLFTT+ R++LNV+ST Sbjct: 19 FFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTLLLFTTIFRISLNVSST 78 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 R+IL G+ G VV FG F+ GGN IG +VF++L+II F+VI KG+ R+AEV A Sbjct: 79 RLILSTGNPGV-----VVNVFGQFVGGGNLVIGAIVFIVLIIIQFVVINKGSERVAEVTA 133 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+MDGA+K+V+GDA AGI Sbjct: 134 RFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGAMDGATKYVKGDAAAGI 193 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I +IN+VGG ++GV+ G+ + A + + LLTIGDGLV+QIP+L+IS + G++VT+ S Sbjct: 194 IITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPSLLISLSTGILVTKGSN 253 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR--E 331 + D +++ QLF V+ + + VL +LG++ + N +L L +A+++ G+ + Sbjct: 254 ENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG---LAVAFFVTGKNLD 310 Query: 332 QKAPAEPKPVKMAENNTVVEATW---NDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGR 386 +KA E + A+ + E N V L D + +E GY +IP+ D Q G+LL R Sbjct: 311 KKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIPLADVNQGGDLLDR 370 Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446 + IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ ++A+NPG Sbjct: 371 VVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEILFDHYMAMNPGYVE 430 Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506 + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL +I H AEL R Sbjct: 431 EEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRSHIAELLTR 490 Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566 Q+ Q L++ + + P + ++L+P ++ L + KVLQNLL E + IRD+ TI ETLA+HA Sbjct: 491 QDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRDLLTIFETLADHAQ 550 Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGG-GLE 621 D LT VR L RAI+ ++FP + VI LD +E+ ++ Q QG L+ Sbjct: 551 TTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSSVKQTEQGSYLSLD 610 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681 P ++ + + + E LG +++ + +R + L+VLS E+ N Sbjct: 611 PDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKDLIVLSYNEVESNV 670 Query: 682 HIR 684 ++ Sbjct: 671 ELQ 673 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 281/675 (41%), Positives = 418/675 (61%), Gaps = 40/675 (5%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 +++LP+P +LD F NI LS++VLL ++ + EF++FPT+LL TL RLALN++ST Sbjct: 18 LLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTLLLALTLFRLALNISST 77 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 R++L++G+ AG+V++AFGHF++ GN+ +G VVF+ILV+INF+VITKGAGRIAEV A Sbjct: 78 RLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVINFVVITKGAGRIAEVSA 132 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD +PGKQMAIDA+LNAG+I E +A RR +V +EADFYG+MDGASKFVRGDAIAGI Sbjct: 133 RFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGAMDGASKFVRGDAIAGI 192 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I ++N++GG +GVLQ G+S+G + + +TLL+IGDGLV+QIP+LV+S AAGV+VTR S Sbjct: 193 IITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPSLVLSVAAGVLVTRASE 252 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW----IRG 329 + ++G Q+ Q+F P M ++A +L G++PGMP L F AGL +W+ ++ Sbjct: 253 NNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPF----AGLAAFSWFLGKMLKD 308 Query: 330 REQKA-------------------PAEPKPVKMAENNTVVEATWNDVQ--LE-DSLGMEV 367 +E K + A DV+ +E D +E+ Sbjct: 309 QEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVRKLIEVDVFAIEL 368 Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427 GY L+ + + + G+LL R+ +RK A+E G + P V +RDN++L+P YR L++G + Sbjct: 369 GYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEPNDYRFLLRGKAL 428 Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487 G +P RWLA+N + L G T +P F L A WI+ K+ A+I GYTVV+ ++V Sbjct: 429 ARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAEINGYTVVDPASV 488 Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 + THL+ + +A L GRQE Q L+D + Q P L +L+P +VTL + +VLQNLL E Sbjct: 489 LITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLGIIQRVLQNLLRE 548 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 + I ++ ILE + + A + +P +L+ ++R LG ++ V + +D E Sbjct: 549 NISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPGVVRAVTVDPRFE 608 Query: 608 RLLLQALQG-----GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 + L +Q G L+P +L + ++ G P VL+V+ +R L RF Sbjct: 609 QWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVVSSEVRLPLKRFF 668 Query: 663 RRSLPQLVVLSNLEL 677 S P+L VL+ EL Sbjct: 669 ESSFPRLTVLAFQEL 683 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/667 (44%), Positives = 431/667 (64%), Gaps = 21/667 (3%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 I+ ++++P+P I+D L NI LSI++LL M+ + L+F+ FP+ILL TTLLRLALN+ Sbjct: 15 IVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSILLITTLLRLALNI 74 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150 +STR+IL + AG V++AFG F++GGN +G ++F+I+ I+ F+VIT+GA R++E Sbjct: 75 SSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQFIVITRGAERVSE 129 Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210 V ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+MDGASKFV+GDAI Sbjct: 130 VSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGAMDGASKFVKGDAI 189 Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270 A I+I++INIV GL++G++ GM + A +Y +LT+GDGLV+QIPAL+ISTA G+IVTR Sbjct: 190 ASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPALLISTATGMIVTR 249 Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA--GLLGLAWWIR 328 +++ ++G ++ QLF+ P ++ ++A +L L LVP +P L +L + LG A + Sbjct: 250 SASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIGSLFAYLGFAGTQK 309 Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388 ++ E ++ EN + + +Q+ D + +E GY LIP+ GELL RI Sbjct: 310 VTIKEEEQEENIKEL-ENIRDPKKVYELLQV-DPIELEFGYELIPLA----SGELLDRIV 363 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 IR++ A ++G + P++ +RDN+ L+P Y I ++G EI G Y R++A+ G Sbjct: 364 MIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRYMAMTAGEIDED 423 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 + G +PAFGL AIW++ + +A+ +GYTVV+ +V+ATHL H+I QHA EL GRQE Sbjct: 424 ISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIKQHAHELLGRQE 483 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 Q L+D V P L E+LVP ++T+ + KVL NLL E + IRD+ TILETLA++API Sbjct: 484 VQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTILETLADYAPII 543 Query: 569 SDPHELTAVVRVALGRAITQQWFP-GKDEVHVIGLDTPLERLLLQAL---QGGG--GLEP 622 D LT VR AL R I+ ++ P GK + VI LD +E+L+ ++ + G LEP Sbjct: 544 RDTDVLTEYVRQALARTISNKYAPYGK--IEVITLDPSVEQLISSSITQTEHGSYLALEP 601 Query: 623 GLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682 A R+L E + + G PV+L R L + + + P + VLS EL N Sbjct: 602 SSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVLSYNELLPNIE 661 Query: 683 IRMTATI 689 + T+ Sbjct: 662 VASVETV 668 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/673 (44%), Positives = 434/673 (64%), Gaps = 10/673 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA I +L IL+++++PLP LD+ +I LS+++LLVA+ R +EF+ FP++LL Sbjct: 17 LAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFPSLLLLV 76 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLALNVA+TR+IL +G GA AAG ++E FG F VGG+ +G+VVF+IL+I+NF VI Sbjct: 77 TLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLIVNFTVI 136 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR + +E +F+G+MDGA Sbjct: 137 TKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFFGAMDGA 196 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDA+AG+ I +NIVGGLL G+L+ +S+ AAE+YTLLT+GDGLV+Q+PAL++S Sbjct: 197 SKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQMPALLVS 256 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 TAAG++VTR + D+G Q+ +Q+ P V+ +A VL LGL+PGMP + F LL Sbjct: 257 TAAGLVVTR-AAGSDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGGVAGALL 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 A GR++ A P+P + ++ LE VGY L+P++D + G Sbjct: 316 LAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALELG----VGYGLVPLIDLDKGG 371 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 EL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P R +A++ Sbjct: 372 ELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPERLMALD 431 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 P + G VDPAFGL A+WI A + +A+ G T+V+A++V+ THL+ L+ ++A Sbjct: 432 PNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSELLRRNAH 491 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 E+ GRQE Q+LL + ++ PKL ED+VPG ++L L +V++ LL E V +RD+RT+LE + Sbjct: 492 EIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLRTVLEAV 551 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQGGG 618 A+ AP +P L R L R +T + V + LD E R L A G Sbjct: 552 ADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLGASDGEA 611 Query: 619 GLEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P + A RL+A + +R G P VLL LR L F R +P + VL+ E Sbjct: 612 ALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQVLAARE 671 Query: 677 LSDNRHIRMTATI 689 L+ + T+ Sbjct: 672 LAPGTTVEPAGTV 684 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 289/669 (43%), Positives = 421/669 (62%), Gaps = 19/669 (2%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P+ + ++ +M++P+PA +LDLL ++A S++V L A+ ++ ++F+ FPT+LL Sbjct: 24 LALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLLLL 83 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+V+ Sbjct: 84 TLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFLVV 143 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 + GA R AEV ARF LD +PGKQMAIDAD+NAGLI E A++RR + QEA+FYG+MDGA Sbjct: 144 SHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMDGA 203 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 ++F + D++A ILI INIV GLL+G LQHG+++ A ++YT+LT+GDGLV IP+L++S Sbjct: 204 ARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLLVS 263 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 A G+++TR S+ + ++ QLF + + +++ VLG L LVPG+P L FL+ L Sbjct: 264 VAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVILA 323 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 G+ + + A + K A+ + + V D L +E+G++LIP+VD Q G Sbjct: 324 GIGRTVTKEQPAEEAAEEAGKKADPSRA--DNLDSVLKVDDLSLEIGFQLIPLVDEAQGG 381 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 +L R+R++R+ A E+GFL P VHI DN+ L+P Y + ++G+EIG + LA++ Sbjct: 382 LMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLAVS 441 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 + G+ +PAFG NA WI L+EQA GY+VV+ +T ++THL LI HA Sbjct: 442 NEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTHAH 501 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 EL R E ++LLD + + PKL E+LVP V++L + KVLQ LL E+V IRD+ TILETL Sbjct: 502 ELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILETL 561 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621 E A + VR ALGR +TQ+ + V+ L+ LE L+ A Q E Sbjct: 562 VEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQS----E 617 Query: 622 P---GLADR-------LLAQTQEA---LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 P L DR L A+ E+ LS+ A PVLL R L R+L P+ Sbjct: 618 PPTDALLDRRTPASAQLFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPR 677 Query: 669 LVVLSNLEL 677 + VL+ E+ Sbjct: 678 ITVLAPPEI 686 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust. Identities = 282/634 (44%), Positives = 404/634 (63%), Gaps = 9/634 (1%) Query: 57 MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116 ++LLV +FT L+F+ FPT+LL TL RLAL VA+TR+IL G A+AG V+ AFG Sbjct: 54 VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108 Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176 F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168 Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236 E EA++RR + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++ GM + Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228 Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296 A +YTLLTIG+GLV QIPAL++ST+AGV+VTR + G + QL + P ++ ++A Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI-RGREQKAPAEPKPVKMAENNTVVEATWN 355 A+ LLGLVPG+P+L+ L L +++ R+++ A P E T E Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348 Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 Q+E L +E+GY L+P+ +Q G+LL R+ ++R++ A E+G + IRDN+ L P Sbjct: 349 YFQVE-PLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPP 407 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 Y ++G+E G+ PG +LA++P L G AT +P FGL A WI A KE+A+ Sbjct: 408 NVYLFRLRGIEAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAE 466 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 G+TVVE S V+ATHL+ I Q+A L GRQE ++LLD + ++ P L E+LVPG++ L Sbjct: 467 AAGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLG 526 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 + KVLQ LL+E+VPI+D+ +ILE LA+ A + DP L R AL R ITQQ + + Sbjct: 527 EVQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQ-YARDN 585 Query: 596 EVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 ++ V+ L E L QA + G LEP RLL + +A+ G PV+L R Sbjct: 586 KLSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGAR 645 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LL R + PQ+ V+S E+ + T+ Sbjct: 646 LLLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/671 (40%), Positives = 403/671 (60%), Gaps = 10/671 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 + L+L+++ +PLP ILD +++LS+++L+VA++ + L+F +FPT+LL T+LRL+ Sbjct: 31 VTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFPTLLLVVTMLRLS 90 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNVASTR+IL EGHTG AAG V+E F F+V GNF IGIV+F ILV+INF+VITKG+ R Sbjct: 91 LNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVVINFLVITKGSTR 150 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD MPGKQMAIDADL AGLI E EAK RR + E+ F+G+MDGASKFVRG Sbjct: 151 IAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFFGAMDGASKFVRG 210 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DA+AGI+I +IN++GG+L+GV+Q+ +S+ AA SYT LTIGDGLV Q+PAL++S AAG+I Sbjct: 211 DAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQVPALIVSLAAGLI 270 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 VT+ T+ E ++ QL P + ++A +L +GL+PG P +VF + GL W+I Sbjct: 271 VTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFALGGLMAGLGWYI 330 Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLIPMVDFQQDGELL 384 +E++ + + ++ + A VQ D L +E+G L+P++ D L Sbjct: 331 GQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALVPLMS-AADAALP 389 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 G+I+S+R FA+E GF+ P V I D L Y +L++GVE+ G+ P + +NP Sbjct: 390 GKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEVRPNGMMVVNPSD 449 Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504 + GEA DP FGL+A+WI+ +A+ QGYTVV+ +V+ THL ++ +H +L Sbjct: 450 NPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHLTEVVKEHMPDLL 509 Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564 Q L++ + ++ KL + + G + VLQ LL E+V +R++ I+E +AE Sbjct: 510 TYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVRNLPLIVEAIAEA 568 Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG----- 619 S+ + VR L I + + VI L ++ + +++ G Sbjct: 569 KRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVDSIRMNGDDKTLI 628 Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679 + P + + + P +LV+ R + L R P V+S+ E+ Sbjct: 629 MSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSPMTQVISHNEVHR 688 Query: 680 NRHIRMTATIG 690 N ++R ATIG Sbjct: 689 NANLRTLATIG 699 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 297/680 (43%), Positives = 430/680 (63%), Gaps = 21/680 (3%) Query: 25 PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84 P+ I+ + ++++PLP ++++LL T NI +++LL ++ Q LEF FP++LL TTL Sbjct: 17 PVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVFPSLLLATTLA 76 Query: 85 RLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143 RL LNVA+TR+IL + G AAG V+E+FG F+ G A+GI++F+I+++I FMVITK Sbjct: 77 RLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIIIIVIQFMVITK 136 Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203 GA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+ADF+G+MDGASK Sbjct: 137 GATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQADFFGAMDGASK 196 Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263 FVRGDAIAGI+I +INIVGG ++G LQ GMS+ AAE YT LTIGDGLV+Q+PA +IS A Sbjct: 197 FVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVSQVPAFLISLA 255 Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 AG++VTR S ++ + V QL S P ++++ A LGLL + G+P + L G LG+ Sbjct: 256 AGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPLLTLCGGCLGI 314 Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG-----MEVGYRLIPMVDFQ 378 A++I+ ++++ A+ + + + + A D ++ED L ME+G L+ + Sbjct: 315 AFFIKKQDRQDEADKQTAETKKQDQEKAAKKED-RIEDYLSIDPMEMELGVGLVRLAAPD 373 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + G+LL R+ +R+ A E+G + P V IRDNM L +YRI + + YP R L Sbjct: 374 RGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAENTIYPDRLL 433 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 AI + G LPGE T DPA+ A+WIE L+ QA++ GYT+VE S+V+ATHL + + Sbjct: 434 AITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLATHLQRVAKK 493 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 HA EL R + LLD + E P + ++L+PGV+ L + VL NLL E+VPIR + IL Sbjct: 494 HADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEVPIRQLAIIL 553 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 ETL +HA D LT VR L R I ++ ++++ V+ LD ++ + G Sbjct: 554 ETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQ----DRIAAGI 609 Query: 619 GLEPGLADRLLAQTQEALSR------QEML--GAPPVLLVNHALRPLLSRFLRRSLPQLV 670 E G R+ Q E R +++L G PP++LVN +RP L + +P L+ Sbjct: 610 DTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNHIPDLI 669 Query: 671 VLSNLELSDNRHIRMTATIG 690 VLS+ E++ + I I Sbjct: 670 VLSHNEVTRDTLIESVGIIS 689 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 253/652 (38%), Positives = 397/652 (60%), Gaps = 26/652 (3%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP +LD+ N+ ++I +LL+ +FT+ LEF+ FPT+LL TT+ +L LN++STR IL Sbjct: 33 PLPTSLLDIFIVTNLTVAINILLITLFTKSVLEFSTFPTVLLITTMFKLGLNMSSTRSIL 92 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 G+ G V+EAF + G N+ +GI++FVI++I+ +V+T G+GR++EV ARF L Sbjct: 93 TTGN-----GGHVIEAFADVVAGENYIVGIILFVIIMIVQLVVVTNGSGRVSEVSARFTL 147 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQMAID+DLN+G I E++A++RR ++ +EADFYGSMDGASKFV+GDAIAGI+I++ Sbjct: 148 DAMPGKQMAIDSDLNSGAITEEQARQRRKDLQREADFYGSMDGASKFVKGDAIAGIIIVL 207 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277 +N++GG ++ + +S+ A + L IGDGLV+ +P+L+IS A GVIVTR + Sbjct: 208 VNLIGGTIIFTAKGDLSITDALSQFGKLAIGDGLVSSVPSLLISLATGVIVTRSEDNSTF 267 Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337 G + + NP + + +L +L LVPG P + F++ + + ++ +E++ E Sbjct: 268 GTDIASDALRNPQLFKVVGVILLVLALVPGFPKIPFIVLSLAMFAANVLVKQKEEQRIKE 327 Query: 338 PKPVKMAENNTVVEATWNDVQLEDS---------LGMEVGYRLIPMVDFQQDGELLGRIR 388 ++ E T+ + Q ED L +E+GY LIP+VD D L+ RI Sbjct: 328 ----RIKEEQTLALQRKKEEQEEDDDVASFQVEPLSIEIGYGLIPLVDSTIDNSLMNRIS 383 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 +IR++ A E+G L V IRDN+ L Y I ++G E+G GD YP +++ I+ + G+ Sbjct: 384 AIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIRGNEVGHGDIYPDKYMIISQ-SDDGS 442 Query: 449 LP--GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506 P G T +PAF L+A+WI+ KE A +QG+TV+E TV+ATHL +I HA EL GR Sbjct: 443 FPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVIEPLTVIATHLKEIIHAHAPELLGR 502 Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566 QE Q+LL+ + + ++L+P ++ L + KVLQNLL+E VPI D+ TILETLA++ Sbjct: 503 QEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQNLLEENVPINDLSTILETLADYGT 562 Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LE 621 + D LT VR L R I ++ D ++V+ + +E ++ Q++Q ++ Sbjct: 563 VTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTIHPKVEEMVSQSIQKTATGSYPVMK 622 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 P +++L + + V+L + +R + + + P + VLS Sbjct: 623 PDSVNKILTAIGDISQQMAAQNMNYVILTSPKIRLAFRKLIAFNFPDVAVLS 674 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 276/702 (39%), Positives = 422/702 (60%), Gaps = 52/702 (7%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 ++ IL+++++PLP+ ILD +IALS++++L++++ + + FPT++L TL RL Sbjct: 32 FLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRL 91 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 +LN+A+TR+IL EG G A +++ AFG F+VGGN IG++VF ILV+INFMV+TKG+ Sbjct: 92 SLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGST 151 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R++EV ARF LD MPGKQMAIDADLNAGLI E A+ RR EV EA+FYG+MDG+SKF++ Sbjct: 152 RVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIK 211 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDA+AGI+I +INI+GG L+G QH M++ AA +YT+LTIGDGLV+QIP L+ STA + Sbjct: 212 GDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAI 271 Query: 267 IVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 I+TR S D ++ E + QL S +L+ VL + LVPG+P L + G + L + Sbjct: 272 IITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTL-----SLGFMALVF 326 Query: 326 WIRGREQKAPAEPK----PVKMAENNTVVEA-------------------------TWND 356 G K E K VK ++ + V + ND Sbjct: 327 LSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKIND 386 Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 + + L +E+GY LI + + EL RIRS+R+ A+ +GFL P + IRDN+ L+P Sbjct: 387 ILKVEILELELGYGLIKLA----ENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPN 442 Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQI 476 Y +KGV I S + YP ++LA++ G + G AT +PAF +A+WI++ LK++A + Sbjct: 443 EYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATL 502 Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536 GY V++ ++V++TH++ LI HA+EL RQE Q LLD+V + P + E + GV ++ Sbjct: 503 NGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGAL-GVAPVSL 561 Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596 + K+L++LL +PI+DM TILE++++ A + + VR +L R IT + K Sbjct: 562 IQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGN 621 Query: 597 VHVIGLDTPLERLLLQALQGGGG--------LEPG-LADRLLAQTQEALSRQEMLGAPPV 647 + + LD+ +L++ +Q G + G L D L A+ A++ + P + Sbjct: 622 LDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVA-AVANGRI--KPFI 678 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 L V LR ++ +VVLS E+++N + I Sbjct: 679 LCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 276/668 (41%), Positives = 422/668 (63%), Gaps = 10/668 (1%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++++L+++++PLP FILD+ + +I S++VL+VA+F +RTL+F +FPT+LL TTLLRL+ Sbjct: 67 VVVLLAILIIPLPTFILDMGLSLSITSSVLVLMVALFLERTLDFTSFPTLLLLTTLLRLS 126 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 L +A+TR+IL G G AAG VV AFG FL+GG+ IG +VF IL+++NFMVITKG+GR Sbjct: 127 LEIATTRLILSHGSEGTYAAGHVVAAFGGFLMGGDLFIGGIVFCILLVVNFMVITKGSGR 186 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEV ARF LD MPGKQMAIDADL++G I E A+ +R E+ E+ FYG+MDGA+KFVRG Sbjct: 187 IAEVAARFFLDSMPGKQMAIDADLSSGAINERTARAKRKELEDESAFYGAMDGAAKFVRG 246 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAG++I INIVGGL +G+L+H M + AA ++T LT+GDGLV+QIPAL++STAAG++ Sbjct: 247 DAIAGLIITAINIVGGLAIGILRHDMPLSEAASTFTTLTVGDGLVSQIPALLVSTAAGIV 306 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 VT+ +D +V QL NP + ++ + L ++PG+P L FL+ G G+ W+ Sbjct: 307 VTKGGSDGSTDVTLVRQLGGNPKPLAVAGGLSALFAIMPGLPALPFLVIAVG-AGIGAWM 365 Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387 R + + +++ T +++ D L +E+G+ L+P+ ++ +L +I Sbjct: 366 RHKTPVKDGDGDVTQISPQPTA--PPISEMLKLDLLRLELGFGLLPLTS-GENPQLTEQI 422 Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447 +++R+ A E+GF+ P V I+DN+ L Y I +K +EIGSG+ PG+ +A++P A Sbjct: 423 KALRRTVATELGFITPPVRIQDNILLPSDNYVIKLKEIEIGSGEVKPGKLMAMSPSGGAP 482 Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507 LPG+ T +PAFGL A+WI+ +LK +A T+V+ ++V+ THL+ + Q+ +L Sbjct: 483 DLPGDRTTEPAFGLPAVWIDPSLKPKAVAMKCTIVDPASVIVTHLSEAVRQNLPDLLTYV 542 Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567 Q LLD + +E KL DL+P V L+T+ +VLQ+LL E+V IRD+ TILE++ E + Sbjct: 543 ATQTLLDDLPREQQKLVNDLIPSQVPLSTIQRVLQSLLAERVSIRDLPTILESIQEGCSL 602 Query: 568 Q-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLE 621 LT VRV L R I G + +I L E + + G + Sbjct: 603 GLRGVQALTGHVRVRLSRQICNALVGGAGYIPMITLSAEWEAEFMAHITGQADDRRLAMP 662 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681 P + ++ + + +E + G PV++V+ +R + + R P + VLS E+ Sbjct: 663 PSMLNKFVGKLREVFNTVSASGEIPVVVVSTPVRDSMRSIVERVRPSVSVLSQSEIYPRS 722 Query: 682 HIRMTATI 689 I+ ATI Sbjct: 723 RIKTVATI 730 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 287/677 (42%), Positives = 431/677 (63%), Gaps = 13/677 (1%) Query: 17 TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76 +Q + L P+ I+ + ++++P+P+ ++DLL NI +S++VLL ++ + LEF FPT Sbjct: 5 SQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIFPT 64 Query: 77 ILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 +LL TTL RL LNVASTR+IL T G AAG V+ AFG F+ G +GI+VFVI+V+ Sbjct: 65 MLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVIIVV 124 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+ADF+ Sbjct: 125 IQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQADFF 184 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M + +AE +T L+IGDGLV+Q+ Sbjct: 185 GAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVSQV 244 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PA + S AAG++ TR S Q++ + QLFSNP ++++ + +L L +P + L Sbjct: 245 PAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVLVLT-NLPKIPLLA 303 Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPV---KMAENNTV-VEATWNDVQLEDSLGMEVGYRL 371 AG GLA + R+QK+ E K V K AE T E D D + +E+G L Sbjct: 304 IGAGCGGLALML-SRKQKS-EEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 I + + +Q G+LL RI ++R+ A ++G + P V ++D L +YRI + G + +G+ Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 PG++LAI+ G G +PG T DPAF A+WI+S L+E+AQ+ GYT VE + V+ATH Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L ++ +HA EL R + LLD + + P + ++LVP + ++ + +VLQ LL E+V I Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R++ TILETL + A DP LT VR L R I+ ++ ++ +HV+ LD LE + Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 ++ L+P + +R+ + L++ G P++LV+ +R L +L Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661 Query: 667 PQLVVLSNLELSDNRHI 683 P+L VLS E++ + + Sbjct: 662 PRLHVLSFNEVTRDTKV 678 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/661 (43%), Positives = 418/661 (63%), Gaps = 10/661 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P+ +L I+ ++ PLP F+LDLL +I +S+ VL+V+++ R +EF +FPT LL Sbjct: 31 LAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEFTSFPTTLLLL 90 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F++L+ I ++VI Sbjct: 91 TLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFLVLIAIQYVVI 150 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR + EA+FYG+MDGA Sbjct: 151 NHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATEAEFYGAMDGA 210 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 S+F + DA+A ILI INI+ G L+GV QHGM A E+YT+LTIGDGLV IPAL+IS Sbjct: 211 SRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGLVTVIPALMIS 270 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 + G+IVTR S++ +G + Q+ N +LL+A VL L +PGMP L FL+ G Sbjct: 271 ISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKLPFLVLGFGAG 330 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 W +R E A P P + ++ + +++E L +EVG LI +V+ Q+ Sbjct: 331 AGGWRMRKTELAQIAAP-PEDTGKPAPAKDSVESLLRVE-PLAIEVGLGLIGLVEGAQES 388 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 LL RI +IR++ A ++G+L P V + DN+ L+ Y I +KGVEI + G LAI Sbjct: 389 PLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYELPQGCELAIA 448 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 G A+ L G+AT DPAFG+NA WI + ++A+ GYTVV++ +V+ THL+ +I ++A Sbjct: 449 TGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTHLSEIIRRYAH 508 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 ELF RQ+A++LLDRV E PK+ ED+VP ++ L+++ +VLQNLL E+V IRD +ILE L Sbjct: 509 ELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSIRDAVSILEAL 568 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618 E +P LT VR A+ RA+ + + ++ +D +E + A++ G Sbjct: 569 GEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVEAAVEHGEQNS 628 Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P +L + + E P V + + R L + ++P L L++ E Sbjct: 629 HIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTMPNLFFLAHNE 685 Query: 677 L 677 + Sbjct: 686 V 686 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 285/690 (41%), Positives = 435/690 (63%), Gaps = 30/690 (4%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 ILI+ I+ +MV+P+P F+LD L NI +SI++LL ++ +R L+ + FP++LL T+ R Sbjct: 15 ILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDISIFPSLLLVMTIFR 74 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 LALNV+STR+IL+ G GKV+ AFG F+VGGN+ +GI++F+ILVII F+VITKG Sbjct: 75 LALNVSSTRLILLNGKN---FEGKVIRAFGDFVVGGNYIVGIIIFLILVIIQFLVITKGT 131 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EADFYG+MDGASKFV Sbjct: 132 ERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREADFYGAMDGASKFV 191 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 RGDAIAG++I +IN+VGGL++G+LQ G+++ AAE + LLT+GDGLVAQIPAL+IST+AG Sbjct: 192 RGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLVAQIPALLISTSAG 251 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +IV+R ++ + G ++ QL S+ V+ ++ ++ +LGL+ +P L+ AGLL +A+ Sbjct: 252 MIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFPSLILGAGLLFVAY 311 Query: 326 WIRGREQK--------------APAEPKPVKMAENN------TVVEATWNDVQLEDSLGM 365 R E + A PK K + T E +Q D++ + Sbjct: 312 ANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEEVSEVLQ-GDTIEV 370 Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425 ++GY LIP+ D Q G+LL RI +RK+ A E+G + + IRD++ L Y I ++GV Sbjct: 371 DIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLLSSNEYVIKLRGV 430 Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485 E+G + P R LAIN G A LPG T +PAFGL A WI+ +LKE+A +GYT V+A Sbjct: 431 EVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEEAIEKGYTTVDAP 490 Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545 +V ATHL+ I ++A E+ G +E + L+D + L + L+P ++ + L KVL LL Sbjct: 491 SVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLKMHELKKVLSELL 550 Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHE-LTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 E+V IR++ I E+L E A + E L VR +LGR I + E+HV LD Sbjct: 551 YERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKSDDGELHVSALDP 610 Query: 605 PLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 +E+ L ++++ LEP ++ L+ + ++L M G P+L+ + +R + Sbjct: 611 TIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPILICSKNIRYPFA 670 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 RF + + + +++ E+ + + + + Sbjct: 671 RFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 283/659 (42%), Positives = 412/659 (62%), Gaps = 22/659 (3%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 + ++PLP +LD+L FNI+ ++++LLV + ++ LEF+ FP++LL TL RLALNVA+T Sbjct: 42 IFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQPLEFSTFPSLLLLLTLFRLALNVATT 101 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 R++L+ G AG +VEAFG F+VGG+ +G+V+F+IL++I F+VITKGAGR++EV A Sbjct: 102 RLVLLNGD-----AGTIVEAFGKFVVGGSLIVGLVIFLILIVIQFVVITKGAGRVSEVAA 156 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD +PGKQMAIDA++NAG+I E EAK+RR+ + +E++FYG+MDGAS+FVRGDA+A I Sbjct: 157 RFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLMRESEFYGTMDGASRFVRGDAVAAI 216 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I IN+ GG ++G L GM + A Y++LTIGDGLV QIPAL+ +TA+ ++VT+ ++ Sbjct: 217 IITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIGDGLVTQIPALITATASAMLVTKATS 275 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333 +GE++ Q + L+A +L L LVPGMP L FL LL L+ R + Sbjct: 276 GTSLGEELGGQFSAASGPFRLAAFILIALALVPGMPMLPFLALGVALLLLSR----RMSR 331 Query: 334 APAEPK----------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383 P P A + + VE +D D + +E+G LIPMV ++ L Sbjct: 332 VPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRVSLEIGAALIPMVSARRGPGL 391 Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443 + RI +R+ A++ G P V +RDN+ L P YRIL+ G E+ GD P WLAI+PG Sbjct: 392 IDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLGGREVARGDVRPDLWLAIDPG 451 Query: 444 TAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 AA L GE +PAFGL A WI A + +A+ G+TVV++ V+ THL ++ +HA E Sbjct: 452 GAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVVDSPNVIITHLGEVVRRHAGE 511 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 L GR + + ++DRV + P + +DL+P VV++ LH+VL LLDE+VPI ++ ILE+LA Sbjct: 512 LLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLTQLLDERVPISNLPRILESLA 571 Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-GLE 621 HAP DP EL VRV LGRA+ ++ + I LD LE L +A+Q ++ Sbjct: 572 AHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVLDPRLELDLKRAVQNNQLIID 631 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 P ++L + L + G LL + LR L L R+L L V+S E+ + Sbjct: 632 PSRLEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRHSLARALHDLSVVSYQEIPTD 690 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 263/671 (39%), Positives = 426/671 (63%), Gaps = 22/671 (3%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I +L + ++ +P+++LD+L NI ++++VL ++F + L+ A+FPT+LLFTT+ R Sbjct: 12 IYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTMLLFTTIFR 71 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 ++LNV+ST++IL G+ AGKVV+ FG F+ GN IGI++F+IL+II F+VI KG+ Sbjct: 72 ISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQFIVINKGS 126 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE F+GSMDGA+K+V Sbjct: 127 ERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGSMDGATKYV 186 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDA AG++I IN++GG+++G+ G+++ A YT+LTIGDGL +QIP+L+IS A G Sbjct: 187 KGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPSLLISLATG 246 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 V+VT+ S++ ++G++++ QLFS V+L+ A L LLG+ +P +F+ LG+A Sbjct: 247 VLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFI-----PLGMAL 301 Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEAT-----WNDVQL--EDSLGMEVGYRLIPMVDFQ 378 I GR+ A A ++ + EA+ N V L D + +E GY +IP+ D Sbjct: 302 IIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLADVN 361 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 Q G+LL R+ IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ ++ Sbjct: 362 QGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFDHYM 421 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A+NPG + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL +I Q Sbjct: 422 AMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRQ 481 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 H AEL RQ+ Q L++ + L E+LVP ++ + + KVLQNLL+E + IRD+ TI Sbjct: 482 HIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLVTIF 541 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 ETLA+HA + DP LT VR AL RAI+ ++F + +V+ +D +E+ ++ +++ Sbjct: 542 ETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVKNTE 601 Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 L+P + +++ L + E +G P+++ + +R + ++V+S Sbjct: 602 QGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDIIVIS 661 Query: 674 NLELSDNRHIR 684 E+ N ++ Sbjct: 662 YNEVESNVELQ 672 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 278/663 (41%), Positives = 413/663 (62%), Gaps = 12/663 (1%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 I+ ++++P+PA +LD+L ++ S+++L+ A+ ++ LEF +FPT+LL TTL RL LN+ Sbjct: 36 IIVLLIIPVPAPLLDVLLAISLTGSVLILMTAILIKKPLEFTSFPTVLLVTTLFRLGLNI 95 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150 ASTR+IL G G AG V+EAFGH ++ GNF IG++VF+IL+++NFMV+TKG+GRIAE Sbjct: 96 ASTRLILSHGQEGTGGAGAVIEAFGHLMMQGNFVIGVIVFIILIVVNFMVVTKGSGRIAE 155 Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210 V ARF LD MPGKQMAIDADL+ GLI +DEAK RR E+ QE+ F+G+MDGASKFV+GDAI Sbjct: 156 VAARFTLDSMPGKQMAIDADLSTGLISQDEAKIRRKELEQESTFFGAMDGASKFVKGDAI 215 Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270 AG++I INI+GG+++GV+QH M G AA +YT++TIGDGLV+QIPAL+IS AAG++V++ Sbjct: 216 AGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQIPALIISIAAGMVVSK 275 Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330 + + + QL NP + + +A G++ L+PGMP F LA+ R + Sbjct: 276 AGVEGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAMALAAGALAYK-RVQ 334 Query: 331 EQKAPA--EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388 + K P +P ++ A + E + D + +E+GY L+ +++ +L +IR Sbjct: 335 DAKKPKALDPADLEAAAPSEPEEEPISASLAIDDVKIELGYGLLTLINDLDGRKLTDQIR 394 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 ++RK A E GF+ P V I DNM L Y I +K +E G+G+ G + ++P Sbjct: 395 ALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEVRLGCLMCMDPRGGQVE 454 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 LPGE +PAFGL A WI L+E+A +GYTVV+ +TV+ THL ++ ++ A+L E Sbjct: 455 LPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLTTHLTEILKENMADLLSYAE 514 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 Q+LL + + KL +DL+PG VT TT+ +VLQ+LL E+V IRD+ ILE + E AP Sbjct: 515 VQKLLKELPETQKKLVDDLIPGTVTATTVQRVLQSLLRERVSIRDLPQILEGVGEAAPHT 574 Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDE--VHVIGLDTPLERLLLQALQGGG-----GLE 621 + +L VR L R + W D+ + +I L E+ +AL G G L Sbjct: 575 ASVTQLVEQVRARLARQLC--WANRGDDGALPIITLSADWEQAFAEALIGPGDDKQLALP 632 Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681 P + +++ R + G PVLL + +RP + + R Q VV+S E+ Sbjct: 633 PSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRPYVRSIIERFRGQTVVMSQNEIHPRA 692 Query: 682 HIR 684 ++ Sbjct: 693 RLK 695 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 268/657 (40%), Positives = 397/657 (60%), Gaps = 29/657 (4%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 I++M+V+PLP ILD+L ++A+ ++VLL ++ +F+ FP++LL TTL RLALNV Sbjct: 20 IVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIFPSLLLITTLYRLALNV 79 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVVFVILVIINFMVITKGA 145 ++TR IL +G A V++AFG F++G + +G ++F+ILV++ +VITKGA Sbjct: 80 STTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFIIFIILVLVQILVITKGA 136 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR + E DFYGSMDGASKFV Sbjct: 137 TRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIEAEVDFYGSMDGASKFV 196 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GD AG++I IN++GG+++G G S A E+Y TIGDGLV+QIPAL+ + A G Sbjct: 197 QGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGDGLVSQIPALLTTVATG 256 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +IVTR ++ D+ Q +QLFSN V+ + A LG +PG+P + ++ +AG+ L + Sbjct: 257 IIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLPFIPLVILSAGIAYLGY 316 Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLIPMVDFQQDGE 382 + EQ + + ++ E + + D E D + +EVGY LIP+VD Q G Sbjct: 317 SL---EQTVKEQLESIEKKEKESGQDRKPKDFYEELRTDPIEIEVGYHLIPLVDTSQGGA 373 Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN- 441 LL +I ++RKKFAQ+ G + P V I DN+DL P Y I + G E+G P + +A+N Sbjct: 374 LLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGISTVKPDKLMALNT 433 Query: 442 -PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 PGTA ++ GE ++P+FG A WI S K +A+ +GYTVV+ASTVV THL L++ HA Sbjct: 434 SPGTAE-SIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVVVTHLKELLATHA 492 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDL---VPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 + L GR+E ++LLD P L +L PG L + +VLQNLL E + IR++ I Sbjct: 493 STLLGREEVKKLLDHYKTSYPTLIGELDADKPG--NLGIIQQVLQNLLREGLGIRNLVPI 550 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP-LERLLLQALQG 616 LE++A + +P+ LT +VR ++ R + + + ++ VI L++ L+RL Q Sbjct: 551 LESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRILDRLNKSITQD 610 Query: 617 GG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 L P +L+ E M G P+ +VN +R S L + P Sbjct: 611 RIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSYLLAKEFP 667 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 255/655 (38%), Positives = 410/655 (62%), Gaps = 12/655 (1%) Query: 37 LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96 +P+PA +LD L NI++S+++L A+F+Q L + FPTILLFTT+ R++LNV+ST++I Sbjct: 21 VPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTILLFTTVFRISLNVSSTKLI 80 Query: 97 LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156 L G+ GA VV FG F+ + IG++VF+IL+II F+VI KG+ R++EV ARF Sbjct: 81 LSSGNPGA-----VVTQFGRFVGQDDVIIGVIVFIILIIIQFIVINKGSERVSEVTARFT 135 Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216 LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+MDGA+K+V+GDA+AG++I Sbjct: 136 LDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGATKYVKGDAVAGLIIT 195 Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD 276 V+N++GG ++G+++ G+ G A Y +LTIGDGLV+QIP+L+IS A G++VT+VS + D Sbjct: 196 VVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISLATGIVVTKVSKEAD 255 Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336 +G+ ++ QLFS P V+ + L LG+V +P +VF + A + I R + A Sbjct: 256 IGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIFCGRVIDKRVKIASI 315 Query: 337 EPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394 E + ++ + N V L D + +E GY +IP+ D Q G+LL R+ IR++ Sbjct: 316 EEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVNQGGDLLDRVVLIRRQI 375 Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454 A E+G + P + +RDN+ L P +Y I +KG+ + G+ ++A+NPG + G T Sbjct: 376 ALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYMAMNPGYVEEEITGIPT 435 Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514 +P+F L A+WI + +E+A+ GYTVV+ +++ATHL +I H EL RQ+ Q L+ Sbjct: 436 FEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRGHLDELLTRQDVQNLIT 495 Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574 + + L +LVP ++ + + KVLQNLL E + IRD+ TI ETLA++AP D L Sbjct: 496 NITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIFETLADYAPTTRDTDVL 555 Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGG-GLEPGLADRLL 629 T VR +L RAI+ ++F + V+ LD +E+ ++ Q QG ++P ++ Sbjct: 556 TEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTEQGAFLAIDPEKTQSIM 615 Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 ++ + + E LG P+++ + +R + + L+V+S E+ N ++ Sbjct: 616 KSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLIVISYNEIESNVELQ 670 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 300/678 (44%), Positives = 441/678 (65%), Gaps = 36/678 (5%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I ++LI++M+V+P P ++L +L NI+L+++VLL M Q L+F+ FP++LL TL R Sbjct: 10 ISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSLLLLLTLFR 69 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L LNV++TR IL G GKVVE FG+F+VGGN +G+VVF+IL+II F+VITKGA Sbjct: 70 LGLNVSTTRSILSHGE-----GGKVVETFGNFVVGGNVLVGLVVFIILIIIQFIVITKGA 124 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+MDGASKFV Sbjct: 125 ERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGAMDGASKFV 184 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAGI+I++INI+ G+++G+LQ GMS+ AA +T+LT+GDG+V+QIPAL+ISTA G Sbjct: 185 KGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPALLISTATG 244 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT---AGLLG 322 ++VTR +++ ++G + QLF+ P ++ ++AA + LLG+ + +L T AGLL Sbjct: 245 IVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIF----TPIGILLTGPLAGLLA 300 Query: 323 LAWWI--RGREQKAPAEPKPVKMAENNTVVEATWNDVQLE--DSLGMEVGYRLIPMVDFQ 378 + + ++K + + AE + +++ + VQL D + E GY LIP+ D Sbjct: 301 FGAYTLSKSGKEKEEVDEILEEEAEVDE-LKSPESVVQLLHIDPIEFEFGYGLIPLADAN 359 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 Q G+LL RI IR++ A E+G + PVV IRDN+ LQP YR+ +KG E+ G+ +L Sbjct: 360 QGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYL 419 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A++P + G TV+P+FGL A WI A+K++A + GYTVV+ ++VV+TH+ I Q Sbjct: 420 AMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQ 479 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 HA EL GRQE +QL+D + + P L E++ P +++ + KVL LL EKV IR++ TI Sbjct: 480 HAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIF 539 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL---LQALQ 615 ETLA++ + +D LT R AL + IT Q+ + + V+ +E+ + +Q + Sbjct: 540 ETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTE 599 Query: 616 GGG--GLEPGLAD---RLLAQTQEALS-RQE---MLGAPPVLLVNHALRPLLSRFLRRSL 666 G LEP +++ R +A+ E LS RQE +L +PPV R + + L R Sbjct: 600 HGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPV-------RMYVKQLLERYF 652 Query: 667 PQLVVLSNLELSDNRHIR 684 P L VLS EL N ++ Sbjct: 653 PDLPVLSYNELEANVEVQ 670 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 276/690 (40%), Positives = 418/690 (60%), Gaps = 33/690 (4%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 L L +L+++++PL LD + ++A+S ++LL++++ Q+ + FPT++L + RL Sbjct: 18 LFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPADLTTFPTLILILVVFRL 77 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 AL++A+TR IL EGH G A ++ AFG F+VGGN IGI++F+ILV+INFMV+TKGA Sbjct: 78 ALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIIIFIILVLINFMVVTKGAT 137 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR + EA+FYG+MDG+SKFV+ Sbjct: 138 RVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEANFYGAMDGSSKFVK 197 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDAIA I+I ++N+VGG+LVG+ QH +S+ A E+YT+LTIGDGLV+QIPAL++STA + Sbjct: 198 GDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLVSQIPALLLSTATAI 257 Query: 267 IVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL--GL 323 I+TR +TD + Q VNQL + ++L L L LVPG P F+L T GLL GL Sbjct: 258 IITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPT--FILMTMGLLMGGL 315 Query: 324 AWWI----RG------REQKAPAEP---KPVKMAENNTVVEATWNDVQLEDSLGMEV--- 367 + I RG R K P KP + E A +E + +EV Sbjct: 316 GYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQTIETIMKLEVLEL 375 Query: 368 --GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425 G RL+ +V Q + ELL +I++IRK A E+GF+ P + I D+ L P Y++ +K + Sbjct: 376 KLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDDSYLSPNEYQLYLKRI 433 Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485 + G ++LA+ GT L G +P F L+A WI L+E+A ++G+TVV+A Sbjct: 434 PLVKGRIEVDKFLAMG-GTGNEKLQGIHVKEPVFNLDATWITGDLREEALMKGFTVVDAP 492 Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545 T+++TH++ +I +HA ++ RQ+ +++R+ ++ P + E+ + V + L KV ++LL Sbjct: 493 TIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAMK-VTSYGALLKVCKDLL 551 Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605 EK+PI DM TI+E +A+ A P L VR L R ITQ++ +H+I + Sbjct: 552 HEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDTDGILHIITIKPD 611 Query: 606 LERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV-LLVNHALRPLLS 659 +E+ + LQ G L + L+ +T++ L EM G V ++V+ LR +S Sbjct: 612 VEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFSKVCMVVDPVLRKRIS 671 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + Q+ VLS+ EL + + T+ Sbjct: 672 EIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust. Identities = 290/713 (40%), Positives = 424/713 (59%), Gaps = 64/713 (8%) Query: 37 LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96 +PLP+ +LD +IALS +++L+A++ ++ +F+AFPT+LL TL RL+LN+A+TR+I Sbjct: 42 VPLPSALLDFFLAISIALSALIILIALYVKKPTDFSAFPTLLLIVTLFRLSLNIATTRMI 101 Query: 97 LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156 L GH G A ++ AFG F+VGGN+ IGI++F+ILVIINFMV+T G+ R++EV ARF Sbjct: 102 LSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILFIILVIINFMVVTNGSTRVSEVKARFT 161 Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216 LD MPGKQMAIDADLN GLIG++EAK RR E+ EADFYGSMDGA+KFV+GDAIAGI+I Sbjct: 162 LDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFYGSMDGANKFVKGDAIAGIIIT 221 Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD-Q 275 +INI+GG L+GV Q MS+ AA ++T+LTIGDGLV+Q+PAL++STA G+IVTR S + + Sbjct: 222 LINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQLPALIVSTATGIIVTRFSKEGE 281 Query: 276 DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL------------GL 323 + +V+QL + +++ +L L LVPG+P + L F L G Sbjct: 282 NFASGIVDQLINESKTLMIVGCILLLFALVPGLPT-ISLGFVGLLFLTLALLLNKQKDGE 340 Query: 324 AWWI---------RGREQKAPAEPKPVKMAENNTVVEATWNDVQ---------------- 358 AW +G+ ++ A P P + + + + N Q Sbjct: 341 AWKYVESLFKKVRKGKAEEGQA-PLPQRQTQRASGGQTPQNAQQAAPKPQPQESEEERRK 399 Query: 359 -----LEDSLGMEV-----GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIR 408 ++ +L +++ GY+LI D Q GEL+ +IR+IRK A E G L P+VH+R Sbjct: 400 REEAEIDKALKVKILRVGLGYQLIKFADPAQGGELVNKIRAIRKTMATEYGILVPMVHLR 459 Query: 409 DNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIE 467 D+++L P Y+IL+K +EIG G ++LAI G LP G T +P FGL+A WI+ Sbjct: 460 DDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSGFVGELPDGIPTKEPVFGLDAYWID 519 Query: 468 SALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL 527 KE A I+GYT+++ +TV++TH+ LI Q+A EL RQE L+ ++ Q+ P L E++ Sbjct: 520 EDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEELLTRQEVANLVAKLGQDYPILAEEI 579 Query: 528 VPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAI 586 V + T+ +L+ LL E++PI+DM +I E +A+ P ++D L+ VR L R I Sbjct: 580 KG--VGIGTIQHILKELLHEQIPIKDMLSIAEAIADGYPAYKADLPTLSEYVRACLKRLI 637 Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGGG----LEPGLADRLLAQTQEALSRQE 640 T + + L LE+ LL+ L Q G L P + LL A + Sbjct: 638 THNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQRLRLSPTESQSLLDAINVAYQKGV 697 Query: 641 MLGAPPVLL--VNHALRPLLSRFLRRS--LPQLVVLSNLELSDNRHIRMTATI 689 +GA P ++ V LR L+ FL + +VVLS E+ + +I Sbjct: 698 SMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVLSTAEIDYQSKFEILGSI 750 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 244/680 (35%), Positives = 400/680 (58%), Gaps = 45/680 (6%) Query: 43 ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102 ++D+ N+A+S+M+L++ M + LE + FP++LL TTL RL +NV++TR IL T Sbjct: 29 MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNIL----T 84 Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162 ++G +++AFG F+V GN +G+++++I+V++ F+VITKGA R++EV ARF LD MPG Sbjct: 85 NGGSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144 Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222 KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD + ++ IN+VG Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204 Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282 G ++G++Q G + +Y++ T+GDGLV QIP+L+IS + G+IVTR ++ + E + Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR------------ 330 Q P M+++ +G+L L+PGMP L L G + +++ R Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324 Query: 331 -----EQKAPAEPK---------PVKMAENN-TVVEATWNDVQLEDSLGMEVGYRLIPMV 375 +AP +P+ P + E+ V +N +Q+E + M+ GY LIP+ Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVE-PIEMDFGYSLIPLA 383 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGF-LPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 D G L+ RI R+++AQ++GF +P + +RD+ L Y I +KG EI G+ Sbjct: 384 DESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILT 443 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 LA+ P + G T++PA+G+ + WI +E+A++ GYTV++ +V+ +HL+ Sbjct: 444 DYVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSE 503 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 I +HA EL RQE +L++ + + P+L E+ PGV++ L KVL LL E V I+D+ Sbjct: 504 TIKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDL 563 Query: 555 RTILETLAEHA-----PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609 TI+ET+ E P++ D ++ VR +L R IT+ + + + VI LD LER Sbjct: 564 ETIVETMFECISETGLPVK-DTDQIVEKVRASLKRTITRMYCEDGN-MKVITLDAGLERT 621 Query: 610 LLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664 ++ +L G L P L L+ Q E + L +PP++L + +R + + Sbjct: 622 MVNSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQ 681 Query: 665 SLPQLVVLSNLELSDNRHIR 684 P + VLS E++ N I+ Sbjct: 682 FYPNVRVLSFNEVASNVQIQ 701 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 260/676 (38%), Positives = 411/676 (60%), Gaps = 20/676 (2%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 I++IL+++ LP+PA +LD+ F+IA S+++L+VA++ QR L+F+AFPT+LL T++RL+ Sbjct: 53 IIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWIQRPLDFSAFPTVLLIATMMRLS 112 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LN+A+TR+IL G+ G AAG V+ F F++GG+F IG+VVF IL+I+NF+VITKGA R Sbjct: 113 LNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVIGLVVFAILIIVNFLVITKGATR 172 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 IAEVGARF LD +PGKQMAIDADL++GLI E EA++RR E+ +E+ F+GSMDGASKFVRG Sbjct: 173 IAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELEEESSFFGSMDGASKFVRG 232 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAG++I +NI GG+++G +HGM + AA+ +T L++GDGLV QIPAL++S AAG++ Sbjct: 233 DAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLVTQIPALIVSLAAGLL 292 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL--LGLA- 324 V++ T + + QL + P +L++A +L +LG++PG+P F L + +G+A Sbjct: 293 VSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFPFFLLGGAMAFVGIAV 352 Query: 325 --WWIRGREQKAPAEPKPVKMAENN--TVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 R RE A K + AE V+A+ Q+E LG ++ RLI + Sbjct: 353 PRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLSARLIASQE---- 408 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 EL R+ +R+KFAQE GF+ P + + D++ L P YRI + G + S + G L + Sbjct: 409 -ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGTAVASHELRVGEILVV 467 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 ++PGE +PAFG+ A + + +GY V+ +V+ THL+ ++ + Sbjct: 468 LGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNLSVLLTHLSEIVRNNL 527 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 A+L ++ + LLDR+ E KL ED+ P ++ + L VL+ LL E++ IR++ ILE Sbjct: 528 AQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLLAERISIRNLHLILEA 587 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-- 618 +AE AP+ P + VR+ + + I ++V+ L + + Q+L+ Sbjct: 588 IAEIAPLVRRPEMIVEHVRMRMAQQICGD-LSDNGVLNVLRLGNRWDLVFHQSLKRDAKG 646 Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 ++P L ++ + A+ + G VL+ + RP + + R L VLS Sbjct: 647 EIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARPYIRMIIERLFATLPVLS 706 Query: 674 NLELSDNRHIRMTATI 689 ++E++ ++ I Sbjct: 707 HVEIARGVEVKSLGAI 722 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 391/659 (59%), Gaps = 15/659 (2%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 IL ++ P+P+ +LD+L N + +++LL+ F + L F+ FP++LL TL RL+LN+ Sbjct: 26 ILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLLLIATLFRLSLNI 85 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150 A+TR+IL +G AG+V+ A G ++VGGN+ IG+VVF+IL+++ ++V+T GA R+AE Sbjct: 86 AATRLILSDGD-----AGEVINAIGTYVVGGNYVIGLVVFLILIVVQYVVVTNGAQRVAE 140 Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210 V ARF LD MPGKQM+IDAD+N GLI E EA++RR + +EA FYG+MDGASKFV+GDAI Sbjct: 141 VAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAMDGASKFVKGDAI 200 Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270 AGILI++I+I+GGL VG+ Q G+S G A SYTLLT+GDG+V QIPALVISTA G+I+TR Sbjct: 201 AGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPALVISTATGIIITR 260 Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330 +TD +G+++ Q+ P +++ L L L+PG+P L + + + L + + Sbjct: 261 AATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVASLMAALVVYAFKQ 320 Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390 + AE + + LE SLG + L +G L+ I+ + Sbjct: 321 NKYQEAEDNVEDQEDAEKDIYEELKVEPLEISLGPSIAGYL-----GASEGALMDEIKRL 375 Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450 RK+ A E+GF+ P V I Y++ + G ++ G+ Y R LAI+ LP Sbjct: 376 RKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRILAISAQDLTDKLP 435 Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510 G + DP +GL A+WIE LKE+A+ T+V+ TV+ TH+N + A L R E + Sbjct: 436 GVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRLQAPALLTRSETE 495 Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSD 570 +L+ RV L E+LVP +TL+ + KVLQ LL EKV IR++ I E L + + D Sbjct: 496 KLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIAEALVDAGKVSKD 555 Query: 571 PHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL---LQALQGGGGL--EPGLA 625 +L VR LG I Q +HV+ +D +E+L+ ++ + G L +P L Sbjct: 556 HEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTEQGASLYVDPKLT 615 Query: 626 DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 +++L+ + + +G PVL+ + +R + + R LP L VL+ E+ +I+ Sbjct: 616 EQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLALTEVPVGMNIK 674 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 241/676 (35%), Positives = 408/676 (60%), Gaps = 23/676 (3%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++ +++ +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ FPT+LL T+ L Sbjct: 27 LIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSVFPTLLLVMTIFGLV 86 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI----TK 143 LN++STR+IL +G G+++ FG F+VG + G+V+ I+ II V TK Sbjct: 87 LNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFIIFIIIIAVQFIVITK 143 Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203 GA R+AEV ARF LD +PGKQMAID+ ++G + E+EA ++++++ E +FYG+MDGASK Sbjct: 144 GATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQSEVNFYGAMDGASK 203 Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263 FV G+ G LI +INI+GGLLVG+ G++ A +Y LT+GDGLV+Q+P+L+IST+ Sbjct: 204 FVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGDGLVSQLPSLLISTS 263 Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 G+IVTR + G ++ +Q ++ + + + L L +PG P L+ + + + L Sbjct: 264 TGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFPTLILMFLSLSIAFL 323 Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE-----DSLGMEVGYRLIPMVDFQ 378 A+ + G QK + K +K+ E + ++D + D L +E+GY L+P+VD Sbjct: 324 AYSLSGIRQKEEID-KKMKLEEEQA---SIYSDKDVSPVVPLDPLALEIGYNLVPIVDDT 379 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + ELL RI IR++ A E G + P + I DNM L+P Y ++GVE+G G+ G++L Sbjct: 380 KTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVGRGEIKLGKFL 439 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 IN G +G + G+ DP+FGL ++W+ +E A+ GYTVV+ +++ATH+ LI + Sbjct: 440 VINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSIIATHMTELIKR 498 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 H+ E+ RQ+ Q LD ++ + E+++ ++ + +VLQ LL E+V IR++ TI Sbjct: 499 HSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQVSIRNLVTIF 557 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 ET+A+ I D L R ++GR IT + E++VI L+ E++++ + Sbjct: 558 ETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQMIIDSRVESN 617 Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 ++P L + + + + ++ + G PV+L + + RP++ R +P LVV+S Sbjct: 618 HDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITSREIPDLVVMS 677 Query: 674 NLELSDNRHIRMTATI 689 LE+ N + + T+ Sbjct: 678 VLEVPQNIKVNVLKTV 693 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/569 (40%), Positives = 348/569 (61%), Gaps = 20/569 (3%) Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V EA Sbjct: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+TIGDGLV Sbjct: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 AQIP+L++STAA +IVTRVS + D+ + NQL ++PSV+ + ++ +L +VPGMP+L Sbjct: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 Query: 313 FLLFTAGLLGLAWWIRGREQ-KAPAEPKPVKMAENNTVVEA-----TWNDVQLEDSLGME 366 FLLF+A LLG W ++ A AE K ++ T+ E +W + L + + + Sbjct: 190 FLLFSA-LLGFTGWRMSKQPLAAEAEEKSLETL-TRTITETSEQQVSWETIPLIEPISLS 247 Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426 +GY+L+ +VD Q L RIR +R+ + G L P + IR+N L+P++Y I + G++ Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307 Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486 D + +A+ G + G DPA+G+ WI++A K +A GY V+++++ Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546 V+ATH+N ++ + +LF + QL +R++ P+L EDL + + L KV + LL Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426 Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606 E V +RD+ TI L + + D L A VR+AL R+IT F K E+ V L+ L Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNEL 485 Query: 607 ERLLL----QALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 E LL QA QGG ++P + ++ + + + + G PVLLV LRP Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRM 685 LL+R+ R P L VLS E+ D +++ Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKI 574 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/664 (35%), Positives = 383/664 (57%), Gaps = 19/664 (2%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++ IL ++ +P+PA +LD+L NI+ ++++LL+ +++R L+F+ P++LL TL RL Sbjct: 20 VIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVLLLATLFRLG 79 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LN+ASTR+IL +G+ AGKV+ A G ++V GN+ IG+V+F ILV++ F+V+T GA R Sbjct: 80 LNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQFLVVTNGAQR 134 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 +AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+MDGA+KFV+G Sbjct: 135 VAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAMDGATKFVKG 194 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIA I+I++INI+GGL +GV Q G+ A YTL T+GDG+V QIP+L+I+ G+I Sbjct: 195 DAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSLIIAVGTGII 254 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 +TR +T ++ +Q+ Q+ ++P + L A V+ +PG+P+L +L ++ Sbjct: 255 ITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGITFALFGYFA 314 Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387 ++Q E K + EN T E L + ++ P + ++ E+ + Sbjct: 315 HKKKQLKLIE-KTFREFEN------TKKTSTQESLLQVAFSSQIWPQI-LAEETEIQRQF 366 Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447 + +F + G P + ++ L+ Y I + +E SG +P + + I+P Sbjct: 367 SRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMMVIDPQNKLD 426 Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507 G A V+PA+GLNA+W+++ + + G TVVE +V+ TH+ + H+AE RQ Sbjct: 427 KKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKSHSAEFVTRQ 486 Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567 QL+ + L +++P + + + ++ +L+ EKV + + I E LA+ A Sbjct: 487 FVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIFEVLADKARH 546 Query: 568 QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGGGLEPG 623 + D LT VR L +T +++I + LER LL + G + P Sbjct: 547 EKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVITKGLQISPT 606 Query: 624 LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 D L+ Q + + LGA PVLLVN +R L + L R++P L V+S E+ HI Sbjct: 607 DLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISVNEVP--HHI 664 Query: 684 RMTA 687 ++ + Sbjct: 665 KLNS 668 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 255/675 (37%), Positives = 385/675 (57%), Gaps = 33/675 (4%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP ILD L FN+ ++++LL+ +F ++ +F+ FP++LL +T+ L LNV+STR+IL Sbjct: 29 PLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLIL 88 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 G +G ++ AF F+VGG+ IG VF+IL+ + VITKGA RIAEV A Sbjct: 89 T---LGDRFSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIAVQAFVITKGATRIAEVAA 145 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD K M+IDA+ NAG+I E+EA++R+ ++ +EADF+G+MDGASKFV G+ GI Sbjct: 146 RFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGI 205 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 I ++N++ GL+VGV+ A ++YT LTIGDGL+AQ+P+L++S A G IVTR S Sbjct: 206 FITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQLPSLLLSVATGFIVTRSSD 265 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN--LVFLLFTAGLLGLAWWIRGR- 330 G+ + Q + V + + L ++ ++PG P+ L F+ +GL R R Sbjct: 266 QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRKRERV 325 Query: 331 -----EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385 E + ++ K ++ +++T + + D L +E+GY LIP+VD ++ ELL Sbjct: 326 HVQEHEMQKSSDKKGMQQTQDST---SEMGPIVPLDPLSLELGYGLIPLVDKEKGAELLS 382 Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445 RI IRK A ++G + P + I DNM L P+ Y ++G+E+ G G +LAI G Sbjct: 383 RITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAIKSGQV 442 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 +PGE T+DP FGL A+WI +++A+ GYTVV S ++ATHL +I +AA++ G Sbjct: 443 TEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILG 502 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 RQ Q ++D + +E P + +D V L + KVLQ LL E+V IR+ I ETLA+ A Sbjct: 503 RQNVQMIIDALRKEYPAVVDD-VTQKCPLGKIQKVLQGLLREQVSIRNTVAIFETLADFA 561 Query: 566 PIQSDPHE---LTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEP 622 SD L VR LGR I Q+ ++ +HV+ LD+ LE L + + Sbjct: 562 ST-SDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLETFLSEKIALTVDSLS 620 Query: 623 GLADRLLAQTQ--EAL------SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 L L Q Q +A+ +RQE G PVLL +R + ++ V+S Sbjct: 621 ILTLSLDEQRQVLQAVRTVFVPTRQE--GYIPVLLTTDTIRSAMWNLFFSDRIEIAVMSY 678 Query: 675 LELSDNRHIRMTATI 689 E+S + I + Sbjct: 679 KEVSTDMRIETVGVV 693 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/656 (37%), Positives = 369/656 (56%), Gaps = 33/656 (5%) Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + L + FPT+LL TT+ RLAL +++TR+IL+ G G+VV AFG+F+V GNF Sbjct: 58 YVPAALHLSVFPTLLLITTMFRLALTISTTRLILLTGD-----PGEVVVAFGNFVVQGNF 112 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 +G ++F+ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK Sbjct: 113 VVGAILFIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKK 172 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 +R ++ +E+ +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YT Sbjct: 173 KRRDLERESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYT 232 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLG 300 LLTIGDGLV IPA+++ST AG+IVTRV+ +++ +G M +QL + P + ++A +L Sbjct: 233 LLTIGDGLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLI 292 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP----------VKMAENNTVV 350 +LGLVPG+P + F L G GL W ++Q+ E + MA Sbjct: 293 VLGLVPGLPKIPFFLLGIG-AGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPK 351 Query: 351 EATWNDVQL----EDSLGMEVGYRLIPMVDFQQD-GELLGR-IRSIRKKFAQEMGFLPPV 404 EA D +L + +EV L+P VD +QD G+ L I +R E+G P Sbjct: 352 EALNPDSELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPG 411 Query: 405 VHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLN 462 V R N L P Y+I + V + +G A G L + + G V+PA Sbjct: 412 VRARGNGSLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQP 471 Query: 463 AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPK 522 A W+ ++ + G T + + H ++ ++A E G QE Q +L+++ + P Sbjct: 472 AAWVPEQYRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPA 531 Query: 523 LTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVAL 582 + +++VP VV + L +LQ L++E++ IRD+R IL+ LAE+ +++D LT VR A Sbjct: 532 IVKEVVPKVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQ 591 Query: 583 GRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQGGG--GLEPGLADRLLAQTQEALS 637 R I+ ++ G + V LD +E R ++ G LEP LA ++ + Sbjct: 592 RRYISHKYARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECG 651 Query: 638 RQEMLGAPPVLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692 PV+L +R + + L P VLS ELS +I+ A I + Sbjct: 652 HLPPSAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/699 (34%), Positives = 395/699 (56%), Gaps = 24/699 (3%) Query: 8 LRLPANL-KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 ++LPANL + + G +++++ M+++PLP+ ILD L NI +S+++LL+ + + Sbjct: 11 IKLPANLSRHSDIMFAIGAVMVIM---MLIIPLPSLILDFLLIINIIVSLLILLMVLSIR 67 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 +F+ FP++LL T RLALNV++TR IL EG A GKV+ +F F+VGGN +G Sbjct: 68 SANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGGNIVVG 124 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 +V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA+++R Sbjct: 125 VVIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRK 184 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 ++ E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+ G A +YT T Sbjct: 185 KIRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFT 244 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306 +GDGLV+QIP+ +S A G++VTR S++ ++ Q+ Q+F+ P + + A L L+P Sbjct: 245 VGDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLP 304 Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLG 364 G P + + L + ++ +Q+ K V + + + + Sbjct: 305 GFPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLKVEKIE 364 Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 + VG LIP+ + G+L+ RI IR++ A E+G + P V I DN ++P Y + + G Sbjct: 365 LSVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSING 424 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 E+ G P LA+N + G P E +PAFGL A WI+ K+ A+ +G+ + + Sbjct: 425 TEMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQ 484 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV----VTLTTLHK 539 ++V+ATH + I ++A L GR+E Q +LD + + L +++ L + K Sbjct: 485 PTSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQK 544 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VLQNLL E+VPIR+ ILE +A+ I + T +VR L I+Q + V Sbjct: 545 VLQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQDRNIRV 603 Query: 600 IGLDTPLERLLLQALQGGGGLEPGL--------ADRLLAQTQEALSRQEMLGAPP-VLLV 650 I L L+ + Q L G L+ L+ ++A+ G V L Sbjct: 604 ITLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDDIVFLT 663 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +R L +F+ +++ + V++ E++ +++ A+I Sbjct: 664 SPIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/668 (36%), Positives = 380/668 (56%), Gaps = 20/668 (2%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I++L I+ MM+LP+P+ +LD+ + +LSI++ V +F R L+F+AFPT+LL + +LR Sbjct: 21 IMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFSAFPTVLLASLMLR 80 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+LNV+ST++I+ +GH G AAG V+E F +F++GG+ +G+VVF++L+I+NF+VITKGA Sbjct: 81 LSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLVLLIVNFIVITKGA 140 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEVGARF LDGMPGKQ+AIDAD++AG I EAK+RR E F+GS+DGASKFV Sbjct: 141 SRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFGSLDGASKFV 200 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDA+AG+LI +N++ GL++G+ H M +G A +Y++LT+GDGLV QIPA++IS AA Sbjct: 201 KGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIPAVIISIAAA 260 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 +++ + +D+ + Q +P+ + ++ L L+PG+P + F L L G A Sbjct: 261 LLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLGAMVLGGAAL 320 Query: 326 WIRGREQKAP-AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384 ++ + +P E KP A+ + EAT D+ D + + L+ + G L Sbjct: 321 YLYRKTPDSPEGEDKPA--AQTDRPREATMGDILDVDEIHVTFSTDLVSSI-LDAAGGLD 377 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 RI+S+R A E G + P + + D+ L A Y I + GVE G YP R L + P Sbjct: 378 TRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQLYPDRILLLLPEE 437 Query: 445 AAGTLPGEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 P E V +P +G A WIE + +++ + G T V ++ V+ATHL ++ + A L Sbjct: 438 GFRE-PTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHLLEVVKGNLARL 496 Query: 504 FGRQEAQQLL-------DRVAQEMPK-LTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 + ++L+ D E + L E+L+P VT TL +L+ LL+E+V IR++ Sbjct: 497 MTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLLLEERVSIRNLP 556 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 ILE +AE I S + VR L I + +I L E++ Sbjct: 557 LILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQEWEQIFAANSI 616 Query: 616 GGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 G L P L +L+ E + + G P ++ + R LS L Q+ Sbjct: 617 GREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFLSTVLASKGLQV 676 Query: 670 VVLSNLEL 677 VLS EL Sbjct: 677 PVLSFEEL 684 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/691 (34%), Positives = 394/691 (57%), Gaps = 47/691 (6%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 +L+L ++ MMVLPLP +LD+L N+ +S+++L++A++ L+F+AFP +LL TTL R Sbjct: 22 VLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFR 81 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 LAL+V++TR+IL++ A AG++V FG+F+VGGN +GIV+F+I+ I+ F+VITKG+ Sbjct: 82 LALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIITIVQFLVITKGS 136 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LD MPGKQM+ID D+ AG+I +EA++RR+ + +E+ +GSMDGA KFV Sbjct: 137 ERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQMFGSMDGAMKFV 196 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAG++I+ +NI+GG+ +GV Q G++ A + Y++LT+GDG+V+Q+PAL+I+ AG Sbjct: 197 KGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQVPALLIAITAG 256 Query: 266 VIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 +IVTRVS++ D+G + Q+ + P ML+ +L L GL+PG P + FL+ A L+G Sbjct: 257 IIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVTFLIL-ALLVGC 315 Query: 324 AWWIRGREQK------------------APAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365 ++ R+Q APA K + N + +++ M Sbjct: 316 GGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANK------GRLGEQEAFAM 369 Query: 366 EVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 V LI + QQ+ L + +R+ ++G P +H+R N + Y I Sbjct: 370 TVPL-LIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEGEYLIS 428 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTL---PGEATVDPAFGLNAIWIESALKEQAQIQG 478 ++ V + G+ G +L + + L P E W+ +E+ + Sbjct: 429 LQEVPVARGELKAG-YLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERLEKSQ 487 Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLH 538 S V+ HL+H++ ++A + G QE + LL+++ +L ++ V +V L + Sbjct: 488 LEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPLQRMT 546 Query: 539 KVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVH 598 ++LQ L+ E + IR+MR+ILE + E + D +LT +R +L R I ++ G + + Sbjct: 547 EILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILP 606 Query: 599 VIGLDTPLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653 D +E + A+ Q G L+P + + LL Q ++ + + + PVL+V+ Sbjct: 607 AYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMD 666 Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 +R + + + L VLS EL+ +I+ Sbjct: 667 IRRYVRKLIESEYYGLPVLSYQELTQQINIQ 697 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/549 (40%), Positives = 341/549 (62%), Gaps = 15/549 (2%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 ++ I+ +MVLP+PA++LD+ T + ALSI++ +F ++ L+F++FP+ILL + +LRLA Sbjct: 20 LMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASLVLRLA 79 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 LNV+ST++I+ EGHTG AAG V+E F F++GGN +G+VVF +LVI+NFMVITKGAGR Sbjct: 80 LNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVITKGAGR 139 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 +AEVGARF LD MPGKQ+AID+DL G I +EAK RR +EA F GS+DGASKFV+G Sbjct: 140 MAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGASKFVKG 199 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAG+LI +N++ G+ GV+ H +S+ A +Y++LT+GDGLV+QIPA+++S AA ++ Sbjct: 200 DAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSVAAALL 259 Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 +++ + + + QL N + + + A +L + L+PG+P L F+ AG +A++ Sbjct: 260 LSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAAVAYFT 319 Query: 328 R--GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385 + E+ A E KP A + D D + +EV L+ MV ++G Sbjct: 320 KKAADEKAASEETKPEDAAPKAPKI----GDSIYADEIHLEVAPDLVNMVLVGENG-FES 374 Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445 RI IR+ A+E GF+ P + + DN L+ YR+ ++GV + SG PG+ LA+ Sbjct: 375 RIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIEENQ 434 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 L GE +P + A W+ SA K++ VVE V+ATH+ +I + + +F Sbjct: 435 LPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSLVFT 494 Query: 506 RQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 R + LD + A + ++ +PG VT L VL+ LL E+VPIR++ I Sbjct: 495 RMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNLFLI 554 Query: 558 LETLAEHAP 566 +ET+AE P Sbjct: 555 IETVAEAKP 563 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 247/696 (35%), Positives = 386/696 (55%), Gaps = 71/696 (10%) Query: 24 GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83 G +++ I+ MM++PLP ++D+L NI +S +++++AM+ + L F+ FP++LL TT+ Sbjct: 23 GAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSVLLLTTM 82 Query: 84 LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143 RLAL++++TR IL++ AG +VEAFG+F+VGGN A+G+V+F+IL ++NF+VITK Sbjct: 83 FRLALSISTTRQILLQQD-----AGHIVEAFGNFVVGGNLAVGLVIFLILTVVNFLVITK 137 Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203 G+ R+AEV ARF LD MPGKQM+ID+DL AGLI +A++RR + +E+ +G+MDGA K Sbjct: 138 GSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMK 197 Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263 FV+GDAIAG++I+ IN++GG +GVLQ+GM G A Y++LTIGDGL+AQIPAL+IS Sbjct: 198 FVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIAQIPALLISLT 257 Query: 264 AGVIVTRVST-----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLG--LVPGMPNLVFLLF 316 AG+I+TRVS D ++G ++ QL S P ++SAA G+LG L+PGMP VF++ Sbjct: 258 AGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAA--GMLGFALLPGMPTAVFVII 315 Query: 317 TAGLLGLA----WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 +A LG W I+ ++ + A+ E + ED+ G + R Sbjct: 316 SAIALGSGLFQLWRIKQQDSQQQAD-------------ELHAQQLAPEDN-GYQDLRRFN 361 Query: 373 P----MVDFQQDG-------ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 P ++ F Q+ L+ IR +R + GF P I + L +R Sbjct: 362 PTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFC 421 Query: 422 MKGVEIGSGDAYPGRWLAINP---------GTAAGTL-PGEATVDPAFGLNAIWI--ESA 469 + + + + + LA+ G + G + PG+A D + W+ + Sbjct: 422 VYEIPLVTA-TFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCWLPPQHP 477 Query: 470 LKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP 529 L +Q + + A ++ + I Q A+ G QE++ +L+ + E P+L ++L Sbjct: 478 LLQQEDRRCWN---AQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQEL-Q 533 Query: 530 GVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQ 589 ++ L+ VLQ L E++P+R +RTI ETL EH + D LT VR+AL I Q Sbjct: 534 RIMPLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQ 593 Query: 590 WFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGA 644 + + ++V L E LL +L+ L LL Q + A + A Sbjct: 594 -YQQPNGLNVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHA 652 Query: 645 PPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 ++LV LR L L+ + VLS EL+ N Sbjct: 653 --LILVAQDLRSPLRALLKDEFHAVPVLSFAELTSN 686 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 249/687 (36%), Positives = 375/687 (54%), Gaps = 36/687 (5%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 +L+L++LSM V+P+ A +LDL +IA + ++L++A ++ +F AFP +LL + L+R Sbjct: 21 VLLLIVLSM-VIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVSLLIR 79 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+LN++STR+IL G GA AAG V+EAF F+ GG+ +G+ VF ++ ++NFMVITKG+ Sbjct: 80 LSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVITKGS 139 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 GR+AEV ARF LD +PGKQ+AID DLN+G I DEAK+RR+ +E F+GS+DGASKFV Sbjct: 140 GRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGASKFV 199 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAG++I +IN+ GL GV+ HGM + A +Y+ LTIGDGLV+QIPAL+ S AA Sbjct: 200 KGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITSMAAA 259 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 ++++R + + + Q SN V + A + +GLVPGMP LVF A L AW Sbjct: 260 LLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLGVAAW 319 Query: 326 WIRGREQKA-PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-----PMVDFQQ 379 +IR R+ K P + PV+ + + DV D + +E+G LI P+ Q Sbjct: 320 FIRARQDKTRPEDAAPVE-SHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRGLGQ 378 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 RI ++R A+ G + P V I D Q Y + ++GV G G P LA Sbjct: 379 ------RITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLA 432 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 + L GE +P +G A WI +++A I G TVV V++THL ++ + Sbjct: 433 LGAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTN 492 Query: 500 AAELFGRQEAQQLL--------DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L Q+++ + AQ + + +VP V L VL+ LL+E++ + Sbjct: 493 LPALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISV 552 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL----DTPLE 607 R++ I + + E A + P + VR L IT+Q+ + ++ L + + Sbjct: 553 RNLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIA 611 Query: 608 RLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPP----VLLVNHALRPLLSRFLR 663 R ++ + G G P + RL Q LS G PP VL V R L+ L Sbjct: 612 RSEAESARAGNGAIPQIQKRLADALQATLS-----GLPPGIEVVLAVPDHRRRLVRMMLS 666 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIG 690 + VL E+ +R+ T+G Sbjct: 667 SAGIATPVLGLDEIDPGAQVRLRGTVG 693 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 233/675 (34%), Positives = 398/675 (58%), Gaps = 36/675 (5%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 ++++ + MM+LPLP ++D+L N+ LSI++L++A++ + LEF+ FP++LL TTL RL Sbjct: 22 MLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVFPSLLLITTLYRL 81 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 AL ++++R+IL++ AG +V FG+F+VGGN A+GI++F I+ I+ F+VITKG+ Sbjct: 82 ALTISTSRLILLQHD-----AGDIVYTFGNFVVGGNLAVGIIIFAIITIVQFIVITKGSE 136 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK++R++V +E+ YG+MDGA KFV+ Sbjct: 137 RVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGAMDGAMKFVK 196 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDAIA I++++ NI+GG+ VGV+QH MS A +Y +L++GDGL+AQIP+L+IS AG+ Sbjct: 197 GDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPSLLISVTAGL 256 Query: 267 IVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 IVTRV + Q++ ++V Q+ P+ + ++ V+ + L+PG P LVF + +LG + Sbjct: 257 IVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVFGTLGSVVLGAS 316 Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF-QQDGEL 383 W++ ++++A A+ E + +A +D D++ +P++ + D + Sbjct: 317 LWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGA----VPLILYLGADVPI 366 Query: 384 LG---RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G ++ +R ++ +++G P + ++ +L+ + P L I Sbjct: 367 HGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQLVPQEALLI 426 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 + + T+P P WI+ EQA+ QG V + A + +I ++A Sbjct: 427 D---SIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRYA 483 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 E G QE + L+D + +L ++L ++++ + ++LQ L++E + +RD+RTI ET Sbjct: 484 GEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVRDLRTIFET 542 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGG 619 L E P + D LT VR+AL R I +++ + + V+ + +E ++ +++ Q G Sbjct: 543 LVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAG 602 Query: 620 LEPGLADRLLAQTQEALSR-QEMLGAPP----VLLVNHALRPLLSRFLRRSLPQLVVLSN 674 L +AQTQ+ L+ QE L PP VLL + +R L + + R L VLS Sbjct: 603 SYSALD---MAQTQQILTCIQEQL--PPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSF 657 Query: 675 LELSDNRHIRMTATI 689 EL D+ I++ + Sbjct: 658 QELGDDAEIKVIGQV 672 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 231/670 (34%), Positives = 392/670 (58%), Gaps = 25/670 (3%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 + +++ + M+++P+P+ +LD+LF FN+ S++VL+++++T+ EF++FP+++LF Sbjct: 8 LFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLMLFAVFFH 67 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINFMVITKG 144 L L V+S R IL+ G+ GA A AFG ++G GN+ +G+V+FV+L+I+ +MVIT G Sbjct: 68 LVLIVSSARAILVTGNPGALAT-----AFGKLIMGQGNWVVGLVIFVVLLIVQYMVITSG 122 Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204 RI+EV ARF LD MPG+QMAIDADL+AG I +EA+++R + +E+DF+G+MDGAS+F Sbjct: 123 QQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAMDGASRF 182 Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264 VRG+ +A L V+N +GG++VG+L+ G + A Y + IG L I +L +S +A Sbjct: 183 VRGETMASALAAVVNALGGMVVGLLK-GEAAVDALLHYLGVAIGVALQIAISSLALSLSA 241 Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 ++V RVS++Q +GE++ ++L + P ++ + VL + L+PG+P L+ + L+ Sbjct: 242 ALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGVLLI--- 298 Query: 325 WWIRGREQKAPAE---PKPV---KMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378 W+ GR K AE P+ V ++ E + EA V + D++ +E GY L+P+ D Sbjct: 299 WF--GRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVGV-DAVELEFGYELLPLFDTT 355 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 ++L I +RK ++E GF P + I DN+ L+P +YRI ++GV G G G L Sbjct: 356 SGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLLL 415 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A+ G+ + G T +P F L+A WI + K +A+ G TVV+ T+V THL ++ Sbjct: 416 AMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLKS 475 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 A+L RQ + ++D V + P + E+L V +L + V + LL E++P+RD+ + Sbjct: 476 SLADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRVF 534 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 E + + D E + R A + + + + VI L +ER L+++ Q G Sbjct: 535 ELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPGS 594 Query: 619 GLEPGLA----DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVLS 673 + L+ +++ + ++A VL+V+ +R L L R+ L +L VLS Sbjct: 595 EIGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVLS 654 Query: 674 NLELSDNRHI 683 E+ D +++ Sbjct: 655 YNEIMDAKYV 664 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 230/681 (33%), Positives = 388/681 (56%), Gaps = 30/681 (4%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 +L+++I++M+++PLP +++D L NI L+I+V + + + +R L F+ FP++LL TTL R Sbjct: 19 VLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFR 78 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 LAL+++++R+IL++ A AGK++ FG F++G + A+G V+F I+ ++ F+VITKG+ Sbjct: 79 LALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGS 133 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LDGMPGKQM+IDADL AG+I AK+RRS + +E+ YGS DGA KF+ Sbjct: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFI 193 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAGI+I+ +N++GG+ VG+ QHGMS+ A +YT+LTIGDGLV+QIPAL+IS +AG Sbjct: 194 KGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAG 253 Query: 266 VIVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 IVTRV+ D D +G +++Q+F NP V+++++A+ +G++PG P VF L L L Sbjct: 254 FIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALF 313 Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM-----EVGYRLIPMV-DFQ 378 ++ +K + K + ++++ D + SL M + +P++ F Sbjct: 314 YY-----KKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFA 368 Query: 379 QD----GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 ++ ++ G I IR +F + G P + R + +L+ +L+ V S + Y Sbjct: 369 ENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYF 428 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTVVATHLN 493 + + L G V ++ I W++ + E + A L+ Sbjct: 429 DKVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLS 487 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 + + E+FG QE + +LD+ P L +++ VT+ + +VLQ LL E + +R+ Sbjct: 488 QALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGENISVRN 546 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 ++ I+E+LA AP + D L VR +L R I + E+ V+ L +E + + Sbjct: 547 LKLIMESLALWAPREKDVITLVEHVRASLSRYICSK-IAVSGEIKVVMLSGYIEDAIRKG 605 Query: 614 L-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 + Q GG ++ ++D ++ AL VLLV+ +R + R + Sbjct: 606 IRQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKS 665 Query: 669 LVVLSNLELSDNRHIRMTATI 689 ++V+S E+ + I + TI Sbjct: 666 ILVISYAEIDEAYTINVLKTI 686 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 241/679 (35%), Positives = 381/679 (56%), Gaps = 43/679 (6%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 +++L ++MM++P+P F++D+L FN S+++L+ A++ +F++ P+I+L TL RL Sbjct: 25 VVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGALYISSPAQFSSLPSIILLGTLFRL 84 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 AL + +TR+IL E A AG++V AFG F+VGG+ +G++VF+I+ I F+VITKGA Sbjct: 85 ALAITTTRLILTE-----ADAGQIVAAFGSFVVGGDVLVGLIVFLIITIAQFVVITKGAE 139 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEVGARF LD MPGKQM+ID + +G I + EA+++R ++ +E+ FYG+MDGA KFV+ Sbjct: 140 RVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLERESQFYGAMDGAMKFVK 199 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y+LLT+GDGL++QIPAL+++ AAG Sbjct: 200 GDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGDGLISQIPALMMAVAAGA 259 Query: 267 IVTRVSTD---QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 +VTRV + QD+ +++ QL ++ + L+AA+L GLVPG P +VF AGL GL Sbjct: 260 VVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVPGFPLIVFWPL-AGLAGL 318 Query: 324 AWWIRGREQKAPA---------EPKPVKMAENNTVVEATWNDV-----------QLEDSL 363 + + Q A E +PV + VV+ ++ +L ++ Sbjct: 319 LAYAARKRQAAEEVTGSAQNRREARPV--SPGGRVVDHIAGNLPGAGSDLGMAHRLTLTM 376 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 G +G RL P + F + R S+ + +++G P + + L A +RI + Sbjct: 377 GEGLGERLPPPL-FAE------RTESLAEAILEDLGIRVPAIGRLTDARLATAEFRIDFE 429 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF-GLNAIWIESALKEQAQIQGYTVV 482 GV + G P +A + L P GL +WI+ + G Sbjct: 430 GVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAAALDAAGVGYC 489 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 EA+ VV T + ++ ++A + QE + LL R+ LT++++ VV+ L VL+ Sbjct: 490 EAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVL-DVVSAQRLSDVLR 548 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 L++E VPI +MR IL+T+AE + L VR LGR I + V L Sbjct: 549 RLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADSNRIVSAYLL 608 Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQTQEAL-SRQEMLGAPP--VLLVNHALRPLLS 659 P E L A++ G + +RL A E L R+E GA +L + LR + Sbjct: 609 TRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGAQSRAAILTSMDLRRHIR 668 Query: 660 RFLRRSLPQLVVLSNLELS 678 L R Q+ VLS E++ Sbjct: 669 NLLMRHDVQMAVLSYQEIA 687 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 237/666 (35%), Positives = 385/666 (57%), Gaps = 32/666 (4%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 M++LPLP I+DL+ T N+A+S+ +L+VA++ L+ + FP++LL TT+ RL +N++S+ Sbjct: 39 MIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSS 98 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 R IL++ + AG V++AFG F+VGGN+ +G ++F+I+ II F+V+TKGA R+AEV A Sbjct: 99 RQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAA 153 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD MPGKQMAIDADL AG+I +A+ +R + +E++ YG+MDGA KF++GD IAGI Sbjct: 154 RFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGI 213 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I +INIVGGL +GV HGM + AA YTLL+IGDGLV+QIP+L+IS AG++ TRVS+ Sbjct: 214 VISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSS 273 Query: 274 DQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF--LLFTAGLLGLAWWIR- 328 D+ ++G+++ +QL P +LL++A +G G P F L F GLLG+ + Sbjct: 274 DKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSFIFGLLGVILLAKK 333 Query: 329 ---GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ-QDGELL 384 ++ + A A+ +D L + +E+G L ++ + + G+ Sbjct: 334 NSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDLSALIQHRTKSGQSF 393 Query: 385 --GRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMKGVEIGSGDAYPGRWLA-- 439 I +R+ Q++G P +H+R D+ L+ Y IL+ V G P L Sbjct: 394 IDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPYVRGKIPPHHVLTNE 453 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALK---EQAQIQGYTVVEASTVVATHLNHLI 496 + LP T A GL + W+ K E+A I+ +T +E V+ HL++ Sbjct: 454 VEENLKRYNLPF-ITYKNAAGLPSAWVSEDAKTILEKAAIKYWTPLE---VIILHLSYFF 509 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 + + E G QE + +++ + + P L ++ V ++ L L ++ + L+ E++ I+D+RT Sbjct: 510 HRSSQEFLGIQEVRSMIEFMERSFPDLVKE-VTRLIPLQKLTEIFKRLVQEQISIKDLRT 568 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-Q 615 ILE+L+E A + D LT VR +L I+ ++ G+ + V LD +E ++ A+ Q Sbjct: 569 ILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQ 628 Query: 616 GGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 G L+P + +L + ++ G PPVLL +R + + + P + V Sbjct: 629 TSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAV 688 Query: 672 LSNLEL 677 +S E+ Sbjct: 689 ISYQEI 694 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 350 bits (899), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 252/677 (37%), Positives = 376/677 (55%), Gaps = 56/677 (8%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 I+ +M+LPLP I+D L NIA+ +LL+A++ + F++FP++LL TTL RL+L++ Sbjct: 35 IIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSFPSVLLLTTLFRLSLSI 94 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150 A TR IL+E A G +VE FG + GGN +G VVF+I+ ++ F+VI KGA R+AE Sbjct: 95 AITRSILLE-----ANGGHIVETFGSLVAGGNLVVGFVVFLIITVVQFIVIAKGAERVAE 149 Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210 V ARF LD MPGKQ++ID+DL AGLI +DEAK++R + E+ +GS+DGA KFV+GDAI Sbjct: 150 VAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQLHGSLDGAMKFVKGDAI 209 Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270 AGI+I++IN++GGL +GVLQ GM + A +Y++LTIGDGLV+QIPA++ + AAG++VTR Sbjct: 210 AGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQIPAILATIAAGLVVTR 269 Query: 271 VSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 + D+D +GE + Q+ P V+L++ + + VPG P LVFL+ + LLG A W Sbjct: 270 TAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKLVFLMLSVVLLGFAAW- 328 Query: 328 RGRE-----QKAPAEPKPVKMAENNTVVE---ATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 R R ++A P+ + AE TV E A +QLE + + + Sbjct: 329 RYRHHHPVLRRAFKVPEGERPAEEKTVNEDEIAPPAPLQLELAPSLAAAF---------- 378 Query: 380 DGELLGRIR--SIRKKFAQEMGFLPPVVHIRDN----MDLQPARYRILMKGVEIGSGDAY 433 GE R R I ++ +E G PV ++ + D YR+ G + G Sbjct: 379 -GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAFGARLAFGRLS 437 Query: 434 P-GRWLAINPGTA-AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 P ++ G A A LPG P L W A G + + V+ H Sbjct: 438 PNAQFRPARAGDANAPKLPG--FFPP---LAGEWTGQA--------GADIRDGLATVSEH 484 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 + + A G QEA L R+ ++ P L ++++ VV + VL+ L++E VPI Sbjct: 485 CRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVLRRLVEEGVPI 543 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R++R E + + + D LT VRVAL R I ++ G+ + V+ + LE L Sbjct: 544 RNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLLIHPELEDRLR 603 Query: 612 QALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 Q+++ GG + P LA RL A+ + L+RQ G PVLL + +R L + L Sbjct: 604 QSVRVAGGATQLAISPELAGRLGAEVRSHLARQGE-GIKPVLLCSLDVRRHLRKLLEIDF 662 Query: 667 PQLVVLSNLELSDNRHI 683 +L VLS EL+ + I Sbjct: 663 FELPVLSYQELAPDLRI 679 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 223/698 (31%), Positives = 381/698 (54%), Gaps = 53/698 (7%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 +++L++ M+++PLP +++D L NI ++I++ + + + +R L F FP +LL TTL RL Sbjct: 20 VMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMTFPALLLITTLFRL 79 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 AL+++++R+IL++ A AG+++ +FG F++G N +G VVF I+ I+ F+VITKG+ Sbjct: 80 ALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIVTIVQFLVITKGSE 134 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEV ARF LDGMPGKQM+IDADL +G+I +E + RR E+ QE+ YGS DGA KF++ Sbjct: 135 RVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQLYGSFDGAMKFIK 194 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDAIAGI+I+ +N++GG+ VG+ Q G+S+ A +YTLLTIGDGLVAQIPAL+IS +AG Sbjct: 195 GDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVAQIPALLISISAGF 254 Query: 267 IVTRV-STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 IVTRV + ++G ++N+L + +L++A + +G +PG P VFL+ + +LG+ + Sbjct: 255 IVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPVFLILSV-MLGV-Y 312 Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL----GMEVGYRLIPMVDFQQDG 381 + + + + + E K +N+ A + + G EV L+ Sbjct: 313 FFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVDNSLLTENITLSQA 372 Query: 382 ELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 E L I + ++K+F + G L P + I + + + IL+ Sbjct: 373 ETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSDKIDDDKIIILINE 432 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAI--------WIESALKEQAQI 476 V+ + P I P + + F L +I WIE + + Sbjct: 433 VKAKELNC-PFPLFHIEN-------PNDELLSLGFNLISIEDDNKTHYWIERDDESKLAP 484 Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536 GY + + + LI+ + E G QE + +LD++ + P+L ++ V++ Sbjct: 485 LGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECYRQ-VSIQR 543 Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596 ++ VLQ L+ EK+PIR+++TI+ L + + DP LT +R L R I+ +F + Sbjct: 544 INDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYIS-YFFSTDGK 602 Query: 597 VHVIGLDTPLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651 + I L +E ++ + Q G LEP D ++ + + + + + L + Sbjct: 603 FNAIILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYI-QDYIFLTS 661 Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +R + + + PQ+ VLS E++ + I + +I Sbjct: 662 IDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 347 bits (890), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 242/701 (34%), Positives = 384/701 (54%), Gaps = 58/701 (8%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 LI++I+ M+V+PLP +LD L N+ ++VL+ A+ L + FP I+L TTL R Sbjct: 24 CLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAIVLLTTLFR 83 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 LAL+++S R+ILM GH AG++++ FG F++G N +G+V+F I+ I+ F+VITKGA Sbjct: 84 LALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQFIVITKGA 138 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LD MPGKQM+IDAD AG+I D + RRS + +E+ YGS DGA KF+ Sbjct: 139 ERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGSFDGAMKFI 198 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAGILI+ IN++GG+++G++++ +S + +Y++L++GD LV QIPAL+IS AG Sbjct: 199 KGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPALLISMGAG 258 Query: 266 VIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 +VTR+S ++Q++G +V++L S+ V+L+S+ + L+GL+PG P VFL +A LG Sbjct: 259 FLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTVSAS-LGFF 317 Query: 325 WWIRGR-EQKAPAE------PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI----- 372 W R R E+ A AE +P A +A DVQ + +G+ L+ Sbjct: 318 CWSRWRAERSASAEGRHANAGRPALQALGAGTAQAD-ADVQADTDTAF-LGHPLVVILPH 375 Query: 373 -----PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVH---------IRDNMDLQPARY 418 P + Q S+ + E+G L P + + D D AR Sbjct: 376 ACAHTPSLSPQNLAT------SLHARVFDEVGLLLPTIVVGFAAADAIVSDAQD--DARQ 427 Query: 419 RILMKGVEIGSG---DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 R++++ ++ + A+ G L + G + + G A W+ + + AQ Sbjct: 428 RVVIRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV---MAQPAQ 484 Query: 476 IQGYTVVEASTVVATHLNHL--ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 +Q + S + H + I ++ +E FG QE + LLD + P+L ++ V + Sbjct: 485 LQDIGIAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKE-VYRQIP 543 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593 + L ++L+ LL E+V IR+M+ ILETLA + D LT VR+ALGR I+ + Sbjct: 544 VQKLCEILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHR-IAR 602 Query: 594 KDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVL 648 + VI L E + Q ++ L P +A+ L+ + AL++ + VL Sbjct: 603 NGHMKVIVLTPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVL 662 Query: 649 LVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 L + +R + P L V+S E+SDN + + I Sbjct: 663 LASMDVRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 345 bits (885), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 220/665 (33%), Positives = 363/665 (54%), Gaps = 32/665 (4%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 +++PLP FILD++ F +++S+++ + A E +FPT+LL + R+++NV++TR Sbjct: 28 LLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDELKSFPTMLLLIGIFRVSINVSTTR 87 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 IL G+ AG V+E FG F++GGN IGIV+F +L+I F+V GA R AEV AR Sbjct: 88 AILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFTVLIIFQFIV-ANGASRTAEVAAR 141 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD +PGKQM+IDADLN +I E +A+ +R ++ E +FYG+MDGA KF++GD I GI+ Sbjct: 142 FTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNMETEFYGAMDGAGKFIKGDVIFGIV 201 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--S 272 I+ +NI+ GL+VG++Q GMS G AA YT LT+GDG+V QI +L+++ + G+IVTRV Sbjct: 202 ILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGIVNQIGSLMLAISTGIIVTRVFDG 261 Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF--TAGLLGLAWWIRGR 330 + V E + +L ++ V+ + +G+ +P L F L T LG+ R + Sbjct: 262 SPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLPFLPFALVGGTIIFLGIRNKKRIK 321 Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG---------MEVGYRLIPMVDFQQDG 381 ++K K ++M + E Q+EDS G +E+G L +V + +G Sbjct: 322 KEKEDELQKEIEMIQGED--EQLQ---QVEDSFGVFTDKYPIIVELGLDLAALVKQKING 376 Query: 382 ELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYPGRWLA 439 E ++ +RK ++G P ++ +DN +P RY I +KG + G G LA Sbjct: 377 ETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIRIKGAKAAEGVLKSGYLLA 436 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 + L E DP FG + WI + + AQ++GY V+E +++ THL+ ++ ++ Sbjct: 437 LKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQVLEPLSILITHLDVVVRRN 496 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 EL RQ + L++ + + L E++ + L+ + V++ LL E + IRD+ TI+E Sbjct: 497 LHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVIKQLLKEGISIRDLPTIIE 556 Query: 560 TLAEHAPI-QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQ 615 + + I Q+ +T+ VR + + I + +++ +E ++ + Q Sbjct: 557 GIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAALFSDSIELDADVVNNSYQ 616 Query: 616 GG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA-LRPLLSRFLRRSLPQLVVLS 673 G + L R++ Q Q + ++G PVLL R + R L R + VL Sbjct: 617 GYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFRFAIVRLLERYQVEAQVLC 676 Query: 674 NLELS 678 EL+ Sbjct: 677 ISELA 681 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 231/709 (32%), Positives = 388/709 (54%), Gaps = 58/709 (8%) Query: 12 ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 A L S + +++ ++IL+I+ MMV+P+ ILD+L NI++S+++++ A+ + L F Sbjct: 9 ARLASARSEVVGASLIILMIV-MMVIPMGPGILDVLLAINISVSVVLVISAVLIETPLAF 67 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 ++FP +LL TTL RL+L +++TR IL+EG AG +V+ FG F+VGGN A+G+ +F+ Sbjct: 68 SSFPALLLMTTLFRLSLTISTTRQILLEGD-----AGHIVQTFGEFVVGGNVAVGLTIFL 122 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI + AK+RRS++ +E Sbjct: 123 IISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQRRSDLEKE 182 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 + +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS A YT+L++GDGL Sbjct: 183 SQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYTILSVGDGL 242 Query: 252 VAQIPALVISTAAGVIVTRVSTDQ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 VA IP+L++S AAG+IVTRV+ + + + M+ L N + + +S L VPG Sbjct: 243 VAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFCFLFAFVPG 302 Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGME- 366 MP+ VFL +A LL ++I + KA + ++ ++ A+ ++++D L Sbjct: 303 MPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSD---MLSASGKSIKMDDILHTNT 359 Query: 367 ---VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY----- 418 + RL ++ ++ R R + +++G L P+ ++ + Y Sbjct: 360 FAPLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFVEFYVYGVP 419 Query: 419 ----RILMKGVEIGSG----DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESAL 470 I K + I S A PG I G + DP ++ L Sbjct: 420 AMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKY--DMLCDP--------LQKTL 469 Query: 471 KEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ----LLDRVAQEMPKLTED 526 +Q +++ T T + + + L+ Q +LF E Q+ L D+ +++ +L E Sbjct: 470 LDQHKLEYLTF---ETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ER 525 Query: 527 LVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAI 586 ++P +T + +VLQ LL E V I++MR+IL +L E + DP + VR L I Sbjct: 526 VLP----VTKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQI 581 Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEM 641 Q + ++ V L E+L+ ++ + G ++ + L+ +E + Sbjct: 582 CHQH-THERKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLV 640 Query: 642 LGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 P ++ + R + ++ SL + VLS+ E+S N I++ I Sbjct: 641 GNYVPAIVCSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 224/689 (32%), Positives = 376/689 (54%), Gaps = 40/689 (5%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K+ + L + + + MM++PLP ++D++ NI+ ++++L+++++ + LE +F Sbjct: 10 KAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSF 69 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 PTILL TTL+RL+L+V++TR+IL+ AG ++ +FG+F+VGGN +G+V+F I+ Sbjct: 70 PTILLITTLMRLSLSVSTTRLILLHHD-----AGDIIYSFGNFVVGGNIVVGLVIFTIIT 124 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK RS V +E+ F Sbjct: 125 IVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQKESQF 184 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q M A +++L++GD LVAQ Sbjct: 185 YGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDALVAQ 244 Query: 255 IPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310 IPAL+IS AGV+VTRV ++++ +V Q+ N L+SAA++ ++ ++PG P Sbjct: 245 IPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGFPA 304 Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370 LVFL LLG+AW ++ + K A+ L +S + G Sbjct: 305 LVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMGAD-------------LSNSQNISPGAE 351 Query: 371 --LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 ++ + ++ +I +R F +E G P + + + A +L + E Sbjct: 352 PLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQ--ESI 409 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ--AQIQGYTVVEAST 486 D + G A + V N+I ++ Q A + G V + Sbjct: 410 YKDTLIDDTVYFEAGHAEISFE---FVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTN 466 Query: 487 VVATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545 T L L+ +A E G QE + L+D + ++ +L ++L + L+ + +LQ L+ Sbjct: 467 DKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRLV 525 Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605 +E V IRD+RTI ETL + + D L VR+AL R I ++ ++V + + Sbjct: 526 EENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSD 585 Query: 606 LERLLLQAL-QGGGGLEPGLADRLLAQTQEALSRQEMLGAPP---VLLVNHALRPLLSRF 661 +E L +++ Q G ++ +T++ + + + P V+L +R + + Sbjct: 586 IENELRESIRQTSSGSYLNISPE---RTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKM 642 Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + S P + VLS E+ +N +++ T+ Sbjct: 643 IEGSFPSVPVLSFQEVGNNIELKVLGTVN 671 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 221/666 (33%), Positives = 361/666 (54%), Gaps = 45/666 (6%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLPA+++D L NI ++++V + A + R L F+ FP +LL TTL RLAL ++++R+IL Sbjct: 31 PLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVLLITTLFRLALTISTSRLIL 90 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 + A AG+++ FG F++G N +G V+F I+ ++ F+VITKG+ R+AEV ARF L Sbjct: 91 TD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQFIVITKGSERVAEVAARFCL 145 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 DGMPGKQM+IDADL G+I + A++RRS + +E+ YG+ DGA KF++GDAIA I++ Sbjct: 146 DGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAFDGAMKFIKGDAIASIIVAF 205 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD- 276 +N +GG+ VG+ QH M + A ++TLLTIGDGLV QIPAL+IS +AG+IVTRV+ D D Sbjct: 206 VNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPALLISISAGLIVTRVNGDGDN 265 Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336 +G ++ QL NP V+L++A + +G++PG P VF++ A LG +R R+ + Sbjct: 266 LGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVML-AMALGTLLLMRQRQTRVVP 324 Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396 P A + + + ++L + + +++ +L R+R +F Sbjct: 325 LPAAADYA-------GGYPERIMPEALAVILQVSRANYARLEKE-QLCERLRG---QFLI 373 Query: 397 EMGF-LPPVVHIRDNMDLQPARY---RILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452 + G LPP++ L P + R ++ + D + ++ +PG+ Sbjct: 374 DFGVALPPLM-------LCPCEHTDDRTVVVVLNEIRADVF-----TLHFDMLRRVIPGD 421 Query: 453 ATVDPAFGLN----AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 P L+ A+W +E+ G + A + +++ H E FG QE Sbjct: 422 RPCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVMLTHHVNEFFGVQE 481 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 + LLD++ P L ++++ T+ + ++LQ LL E++ IR ++ I+E +A AP + Sbjct: 482 TKHLLDQMESHAPDLLKEVLRH-ATVQRIAELLQRLLMERISIRHLKLIMEAMALWAPRE 540 Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPG 623 D L VR AL R I Q F + + VI L + +E L +L L P Sbjct: 541 KDVSALVEHVRCALARYICHQ-FAADNLLRVIMLSSEVEETLRDSLHTTSAGTFLNLGPQ 599 Query: 624 LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 +++ L+ AL + VLL +R + ++ L VLS EL+++ + Sbjct: 600 VSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEVLSFGELTESVTV 659 Query: 684 RMTATI 689 + TI Sbjct: 660 NVIKTI 665 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 225/686 (32%), Positives = 383/686 (55%), Gaps = 35/686 (5%) Query: 14 LKSTQW-QILAG------PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 +++ QW + AG ++L+ + MM+LPLP +++D+L T N+ S+++LL+A++ Sbjct: 9 VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS 68 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 L+ + FP++LL TTL RL+L ++++R++L++ + AG +V+AFG F+VGGN +G Sbjct: 69 DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVG 123 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 +VVF I+ I+ F+VITKG R+AEV ARF LDGMPGKQM+ID DL AG+I D A+ R Sbjct: 124 LVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQ 183 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 V QE+ F G+MDGA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM A +Y++L+ Sbjct: 184 HVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLS 243 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 IGDGL QIP+L+IS +AG+IVTRV + Q++ ++ +Q+ P ++L+A VL LL L Sbjct: 244 IGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLAL 303 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364 +PG P + F+A LL L I R +K+ V+ E +++V Sbjct: 304 IPGFPFITLAFFSA-LLALPI-ILIRRKKSVVSANGVEAPEKDSMVPG-----------A 350 Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 + RL P + +L+ I ++R ++ G P V+I + +P ++ Sbjct: 351 CPLILRLSPTL---HSADLIRDIDAMRWFLFEDTGVPLPEVNI--EVLPEPTEKLTVLLY 405 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 E + P + + G A + T+ G W+ + +AQ G V Sbjct: 406 QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-QICWLTKDMAHKAQGFGLDVFAG 464 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 S ++ L ++ +H E G QE + L++ + + +L ++L + + + + LQ L Sbjct: 465 SQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRL 523 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 + E+V IRD+R I TL + AP + D LT VR+AL R I ++ P + ++ + Sbjct: 524 VSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGE 583 Query: 605 PLERLLLQAL-QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 +E L+ +++ Q G L+ R Q + + + A ++ + R L + Sbjct: 584 GIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITE 643 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689 +L + +LS EL + I++ +I Sbjct: 644 ATLFDVPILSWQELGEESLIQVVESI 669 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 230/696 (33%), Positives = 385/696 (55%), Gaps = 47/696 (6%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 +L+ ++MM++P+P +++D L NIALS+++L+VA + ++EF+A P ++L +TL RL Sbjct: 25 FMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALPPLILLSTLFRL 84 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 +L++ +TR+IL++G+ AG +V+AFG F++ G +G+VVF+I+ + F+VITKGA Sbjct: 85 SLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITVAQFVVITKGAE 139 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEV ARF LD MPGKQM+ID DL G I EA++RRS + +E+ +G+MDGA KFV+ Sbjct: 140 RVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMFGAMDGAMKFVK 199 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDAIAG++I+ +N++GG+++G++Q GM AA Y+LLT+GDGL+AQIPAL+IS AAG Sbjct: 200 GDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQIPALLISVAAGT 259 Query: 267 IVTRVSTD---QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 +VTRV++D +D+ ++V QL ++ + L+A +L +G++PG P LVF+ A L G Sbjct: 260 VVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLVFVGLAAVLGGS 319 Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVE--------ATWNDVQLEDSLG----------- 364 A+ + R+++A ++ E+ T+ E ND ED+L Sbjct: 320 AFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAA-EDALESAERPRDSQVL 378 Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 + +G L Q L RI ++ +G P+ + + L R+++ ++G Sbjct: 379 LSIGTGLAEAAPLQP---LRQRIEALCHDIRINLGVEVPLPEVYLDRSLPVDRFQVELEG 435 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALKEQAQIQGYTV 481 V + G+ + G L + L T + P W ++ Q G Sbjct: 436 VPVSEGE-FSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHADRLQDAGIGF 494 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 + A V+ L+ + ++AA+ G QE + +L+++ + +L ++++ ++ L + + L Sbjct: 495 LFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVLR-ILPLQRIAEAL 553 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 + L+ E V IR R +LE++ E I+SD LT +R L R I+ Q+ + Sbjct: 554 RLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYADRNRVISAFV 613 Query: 602 LDTPLERLLLQALQGGGGLEPGLADRL-------LAQTQEALSRQEMLGAPPVLLVNHAL 654 L LE L L L D + L + + L ++ VLLV+ L Sbjct: 614 LAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRRLCDMLPEHDL----TVLLVHSEL 669 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R + R + R QL VLS EL+ +++ T+ Sbjct: 670 RRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 221/649 (34%), Positives = 363/649 (55%), Gaps = 26/649 (4%) Query: 45 DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGA 104 D+L FN+ +I++L+VA++ L+F++ P ++L +T+ RLAL +A+TR+IL EG Sbjct: 41 DMLIGFNLGFAILLLMVALYLSTPLDFSSLPGVILISTVFRLALTIATTRLILAEGD--- 97 Query: 105 AAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQ 164 AG ++ FG F++ GN A+GIV+F+I+ ++ FMV+ KGA R+AEV ARF LD +PGKQ Sbjct: 98 --AGSIIHTFGDFVISGNIAVGIVIFLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQ 155 Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224 MAIDA+L I + EA++RR+ + QE+ +G+MDGA KFV+GDAIAG++++ IN++GG+ Sbjct: 156 MAIDAELRNNHIDQHEARRRRAALEQESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGI 215 Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMV 282 +G+L MS+ A YTLLTIGD L++QIPAL++S A IVTRV+ + +G +V Sbjct: 216 SIGLLSKDMSLDAAMHHYTLLTIGDALISQIPALLLSITAATIVTRVNGPSKLKLGADIV 275 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR-GREQKAPAEPKPV 341 +QL ++ + L+A VL L+G VPG P F++ A L A +++ G + PA Sbjct: 276 SQLTASTQALRLAACVLLLMGFVPGFPLPPFVIL-AVLFAAASYVKVGAKGDEPAAKTGA 334 Query: 342 KMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGF 400 + + Q + + + L P + D EL I + + ++G Sbjct: 335 NVTASAPAPAQAQAQKQAAHAEALPIALFLAPNLTHSIDKDELEQSIARVSTSVSADLGI 394 Query: 401 LPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG-EATVDPAF 459 P + R + +L +++RI + V + P + L +N A L G DP Sbjct: 395 TVPRIPARIDQNLSKSQFRIDVDSVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPET 453 Query: 460 GLNAIWIE---SALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 +WIE +A + A I + VE ++A L+ ++++A L G QE +QLL R+ Sbjct: 454 A--RVWIEERHAAALKAAGIGHHRPVE---ILALRLHSTLTRYAQRLVGIQETRQLLARM 508 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 QE L ++++ T+ + +VL+ LLDE +PIR+ R +LE LAE + + + LT Sbjct: 509 EQEYADLVKEVL-RTATIPRIAEVLRRLLDEGIPIRNTRLLLEALAEWSEREQNAVLLTE 567 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631 VR AL R I ++ V ++ E ++ +++ L+ +++LL+Q Sbjct: 568 YVRAALKRQICFRYANAHRVVAAFIIERETEEIVRVSVRETAVGPYLVLDDWQSEKLLSQ 627 Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 ++ S + PV+L + +R + FL R+ L VLS +L+ Sbjct: 628 FRQIHSTIAQSQSQPVILGSMDIRRFVRGFLTRNGLDLPVLSYQDLASE 676 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 225/673 (33%), Positives = 378/673 (56%), Gaps = 25/673 (3%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 +++PLP F+LDL+ +A S++V + A + E +FP++LL + R+++N+++TR Sbjct: 23 LIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMGIFRVSINISTTR 82 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 IL G G+V++ FG+F++G NF +GIV+F+IL++ F ++ G+ R AEV AR Sbjct: 83 AILTTGD-----PGQVIKQFGNFVIGSNFVVGIVIFIILIVFQF-IVANGSSRTAEVAAR 136 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD +PGKQMAIDADLN LI E EAK++R+ + E +FYG+MDGA KFV+GD + +L Sbjct: 137 FTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAGKFVKGDVLFTVL 196 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--S 272 + V+NIV GL+VG++Q G+S G AA YT LTIGDG+V+QI +L+++ +AGVIVTRV Sbjct: 197 LAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAMSAGVIVTRVFDG 256 Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF--LLFTAGLLGL--AWWIR 328 +D +V + +L N V+ +A+ L+G+ +P + F + G++G + ++ Sbjct: 257 SDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVLGIIGYRTQFNLK 316 Query: 329 GREQKAPAEPKPVKMAENNTVVEATWND----VQLEDSLGMEVGYRLIPMVDFQQDGELL 384 +EQ + + +E N+ EA N + + + +E+G + +V + +GE Sbjct: 317 KKEQLELEKEMELIQSETNS-AEAEHNQAFGAAREKFPVVVELGLNIAALVKQKMNGETA 375 Query: 385 -GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYPGRWLAINP 442 ++ +RK Q++G P ++ +DN QP +Y I +KGV + SG G LA+ Sbjct: 376 KDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKAGHLLALKT 435 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 L E T DP FG + WI E AQ++ Y V+E +++ THL+ ++ ++ E Sbjct: 436 PGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDVVLRKNLHE 495 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 L RQ+ + L+D +A E L +++ + + + VL+ LL E + +RD+ TI+E + Sbjct: 496 LLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDLPTIVEGII 555 Query: 563 EHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--RLLLQALQGGGG 619 + I +D +TA VR + + I +Q +++ + L +E ++ G Sbjct: 556 DGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIVNTPYYGYA 615 Query: 620 LEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNHA-LRPLLSRFLRRSLPQLVVLSNLE 676 L L L + + ++ +++ ++ G PV+L R R L R + VLS E Sbjct: 616 LNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLDVPVLSISE 675 Query: 677 LSDNRHIRMTATI 689 LS + A I Sbjct: 676 LSPETEVEQIALI 688 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 223/670 (33%), Positives = 369/670 (55%), Gaps = 36/670 (5%) Query: 33 SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92 SMMV+P+P +D L FN+ L++++L+ A++ L+F++ P ++L +T+ RLAL VA+ Sbjct: 29 SMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVFRLALTVAT 88 Query: 93 TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152 TR+IL EG AG ++ FG F++ GN +G V+F+++ ++ FMV+ KGA R+AEV Sbjct: 89 TRLILAEGE-----AGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVA 143 Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212 ARF LD +PGKQMAIDA+L G I DE+++RR+ + +E+ YG+MDGA KFV+GD+IAG Sbjct: 144 ARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAG 203 Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272 ++++ IN++GG+ +G+L GMS YTLLTIGD L++QIPAL++S A +VTRV+ Sbjct: 204 LVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGDALISQIPALLLSITAATMVTRVT 263 Query: 273 --TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330 + ++GE + NQL ++ + L+A VL +G VPG P VF + A ++ Sbjct: 264 GASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVKGDV 323 Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390 + V AE+ T N + +G+ + L +D EL I I Sbjct: 324 LDADKVDATTVTPAESQ-----TPNVAAQPNPIGVFLAPSLTNAID---QVELRQHIARI 375 Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN--PGTAAGT 448 + + ++G + P + + + L +++RI ++GV + P + + + Sbjct: 376 SQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPAQLSLADDLKKIESSG 435 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 +P DP + IW+E + + + G S ++A ++ ++ HA L G QE Sbjct: 436 IPFRH--DPE--THRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLTCHAPRLVGIQE 491 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK---VLQNLLDEKVPIRDMRTILETLAEHA 565 +QLL R+ QE DLV V+ T + + VL+ LL E +PIR+ R +LE LAE + Sbjct: 492 TRQLLGRMEQEY----SDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVLEALAEWS 547 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEV---HVIGLDTP-LERLLLQALQGGG--G 619 + + LT VR + R I ++ G+ V V+ +T + R ++ G Sbjct: 548 EREQNVALLTEHVRSGMKRQICHRY--GRHGVLPAFVMERETEDVVRCAVRETAAGPYLA 605 Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679 LE ++ LL+Q ++ S P++L + +R + FL R+ +L VLS +L+ Sbjct: 606 LEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSYQDLAS 665 Query: 680 NRHIRMTATI 689 + I+ +I Sbjct: 666 DFKIQPVGSI 675 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 224/604 (37%), Positives = 332/604 (54%), Gaps = 51/604 (8%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP ++D L NI LS+++L+V M+ +AFP++LLFTTLLRL+LN+AST+ IL Sbjct: 30 PLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSLNIASTKSIL 89 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 + A AG ++E+FG +VGGN +G+VVF+I+ + F+VI KG+ R+AEVGARF L Sbjct: 90 LH-----ADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTL 144 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQM+IDADL AG + +EA+KRR+ + E+ +G MDGA KFV+GDAIAG++I + Sbjct: 145 DAMPGKQMSIDADLRAGHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITL 204 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-- 275 +NI+ G+++G+ H M+ G AA + +L+IGD +V+QIP+L+IS AAGV++TRVS ++ Sbjct: 205 VNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVSQIPSLLISVAAGVMITRVSDEEQA 264 Query: 276 ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE 331 +G ++V QL ++ M ++A+L LVPG P+ +F+ + + +R R Sbjct: 265 HKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTLRNRA 324 Query: 332 QKA--------PAEPKPVKMAENNTVVE-ATWNDVQLEDSLGMEVGYRL-IPMVD--FQQ 379 ++ PA + + T+ E A V + LG E+ L +P +D FQQ Sbjct: 325 KEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQ 384 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 R A+ +G P + I LQP Y + + + G A P L Sbjct: 385 G----------RHALAEALGLPFPGIAIWKADALQPDSYEVRVHDIP-GEPVAVPDGHLL 433 Query: 440 I--------NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 I A LP PA WI A Q T V+A H Sbjct: 434 IPDLPEALRAQAVEAAGLPNH----PA----PHWIAPAHVAQDAALSATGQRVERVIADH 485 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 + H++ + A G QE Q +L+RV + P L + V + VL+ LL+E+VPI Sbjct: 486 VVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAE-AQKAVPAQRIADVLRRLLEEQVPI 544 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R+MR ILE+L P + D L VR LGR I Q G ++ I LD +E+ + Sbjct: 545 RNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVR 604 Query: 612 QALQ 615 QA++ Sbjct: 605 QAIK 608 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 235/679 (34%), Positives = 378/679 (55%), Gaps = 33/679 (4%) Query: 28 ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87 +L +L +++LP+P+F+LDL + S ++L ++ + +E ++FP++LL TTLLRLA Sbjct: 28 MLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFPSLLLVTTLLRLA 87 Query: 88 LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147 L +AST++IL+ H AG+++ AFG +VGGN A+G+VVF++L I F+V+ KGA R Sbjct: 88 LAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSAIQFIVVAKGADR 142 Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207 +AEV ARF LDG+PG+QM+IDADL GLIG EA + R E+ +E FYGS+DGA KFV+G Sbjct: 143 VAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFYGSLDGAMKFVKG 202 Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267 DAIAG+++ ++NI GGL VG+ Q GMS+ A +YT+LT+GDGLV+QIP+L++S +AG++ Sbjct: 203 DAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQIPSLIVSISAGLL 262 Query: 268 VTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324 VTRVS+ ++G + QL ++P M+++ L +PG P++ F+L L+GLA Sbjct: 263 VTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQFVLAAVVLIGLA 322 Query: 325 WWI--RGREQKAPAEPK-PVKMAENNTVVEATWNDVQLEDSLGMEVGYRL-IPMVDFQQD 380 + + A PK P + V+ +DV+L S + V RL + Sbjct: 323 VALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRV--RLGSAACNALNA 380 Query: 381 GELLGRIRSIRKKFAQEMGF-LPPVVHIRD-NMDLQPARYRILMKGVEIGSGDAYPGRWL 438 EL ++ +R+ +G P +V +RD +D+ RY + + V G G L Sbjct: 381 AELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVD--RYIVDIDDVPFSGGTLLAGHVL 438 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST--VVATHLNHLI 496 ++ T T+ G P ++W+ + A I ++++S ++ HL + Sbjct: 439 -VSGDTERVTMEGPPGYHPR-AEKSVWVRA--DSAAGIDDTQLMKSSANGLLCDHLMDVC 494 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 + A G QE + LL+ V E +L + VVT + VL++LL+++V IR+MR Sbjct: 495 EKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRVSIRNMRA 553 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERLLLQALQ 615 ILE + + + + R+AL + + + EVH L+ E L + Sbjct: 554 ILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEAELEAQID 613 Query: 616 GGGGLEPGL---ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 G EP ADRL + + +R +++ +++ LRP L R LR + VL Sbjct: 614 LGPDGEPRCVLDADRLESLQRGFAARNDVV---RLVVTTAVLRPHLERVLRTLGMRTDVL 670 Query: 673 SNLELS-DNRHIRMTATIG 690 + E+ D +R+ AT+ Sbjct: 671 AMEEIPLDEYRVRVIATLA 689 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 212/659 (32%), Positives = 346/659 (52%), Gaps = 64/659 (9%) Query: 30 LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALN 89 +I+ MMVLP+P ++D + FN+A + +VL+ ++ + L+ + FP ++L TL RLAL Sbjct: 25 VIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVLDISTFPAVILIGTLFRLALT 84 Query: 90 VASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIA 149 +++TR++L EG AG+++ AFG F+V GN +G+++F+I+ ++ F+V+TKGA RIA Sbjct: 85 ISTTRLVLAEGD-----AGEIISAFGSFVVAGNVVVGLIMFLIVALVQFIVVTKGAERIA 139 Query: 150 EVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDA 209 EVGARF LD MPGKQ+AID+DL +G I + A+KRRS++ +E+ F+G+MDGA +FV+GDA Sbjct: 140 EVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLERESQFFGAMDGAMRFVKGDA 199 Query: 210 IAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVT 269 IAG++I+ +N++GGL +G+ Q G+S AA+ Y+LL+IGDGLV+QIP+++++ AAG +VT Sbjct: 200 IAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGDGLVSQIPSMLMAVAAGTVVT 259 Query: 270 RVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW-W 326 RVS D+ ++G ++ QL P + ++AA+ GL+PG P V GL LA Sbjct: 260 RVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPGFPTTVLWPIGIGLATLALVL 319 Query: 327 IRGREQKAPAEPKPVKMA-ENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385 +R R ++P MA + N A + + D P+V + Sbjct: 320 VRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGD-----------PIVA-TLSAATMS 367 Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445 R+ A +G ++D AR R+ + V + Sbjct: 368 RLE------ANNLG---------GHLD---ARIRVAARAVGV------------------ 391 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 A T+P DP G + I I+ A + + ++A + ++ +H +F Sbjct: 392 AITVP-TFNADPRMGEDMIHIQVE-NVPAGLISCKADRPAELIAQDIVRIVRRHTGSIFS 449 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 +A Q L + + KL D V V+ L V++ LLD V + R +LET+ + Sbjct: 450 VDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRLLDSGVTLSQPRGLLETMLKIE 508 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLA 625 P + DP +L R AL R I + + V+ ER + E Sbjct: 509 PHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSPEWERFVRSYSDASDKTEKEEI 568 Query: 626 D----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680 RL +T++AL G PV+++ LR L + R ++ V++ E+ + Sbjct: 569 SEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQALMIRHNCRVPVVAIEEIDHD 627 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 307 bits (786), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 213/666 (31%), Positives = 348/666 (52%), Gaps = 49/666 (7%) Query: 36 VLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRI 95 +LPLP +DL+ T N++ SI++LL+++ ++F+ FP +LL TTL RL++++++TR+ Sbjct: 30 ILPLPPAAMDLMITLNVSASIIILLMSLQMHNPVQFSTFPALLLVTTLFRLSISISTTRL 89 Query: 96 ILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARF 155 IL+EG AG++VE FG +GGN A+G+V F+I+ ++ F+VITKGA R+AEVGARF Sbjct: 90 ILLEGD-----AGRIVETFGQVAMGGNLAVGLVTFLIITVVQFLVITKGADRVAEVGARF 144 Query: 156 VLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILI 215 LDGMPGKQM+IDAD+ AG + + +A+ R + +EA +G+MDGA KFV+GDAIAG++I Sbjct: 145 TLDGMPGKQMSIDADVRAGNMDQLDARHARQNLEREAKLFGAMDGAMKFVKGDAIAGLVI 204 Query: 216 MVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ 275 VIN+VGG+ +G+ Q G+ G A Y LLT+GDGLVAQIPAL+IS AAG +VTRV+ Sbjct: 205 TVINLVGGVAIGMAQRGVGFGEALSLYALLTVGDGLVAQIPALLISVAAGNMVTRVTNPN 264 Query: 276 --DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333 D+G ++ Q +N ++++ ++ L GLVPG P +F+ + + G W R+ Sbjct: 265 GMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPGFPTWIFVSVGSAMTGGVIWTIRRQH- 323 Query: 334 APAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLI-PMVDFQQD-GELLGRIR 388 + V A+ + + Q + G + RLI P ++ D Sbjct: 324 -----RDVLSAQTDWSLRLDLLQRQCAEIAMRTGAKEAVRLILPKEIYKLDVTAFFSAFE 378 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 ++R AQE G +P + + + P Y+I Y + LA A + Sbjct: 379 AVRISIAQEYG-IPTGYWLFEVDEGSPHSYQI------------YVNQELADCGIFRADS 425 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQI----QGYTVVEASTV-------VATHLNHLIS 497 L +A L W+ + + + Q + E + V + HL + Sbjct: 426 LFVKAHTSYLDALGIPWLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQLLMHLKRVAV 485 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 + + Q +L+ V P L DL + V++NLL E++P+ I Sbjct: 486 ERLDVMASLQNITAILNEVQTNNPALVGDLREAASN-NQIAGVIRNLLRERIPVTSRVRI 544 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 LE + + + + DP L VR+ + IT++ F + V+ + +E L+ + ++ Sbjct: 545 LEGILKWSQKRPDPGYLAQKVRIEIADFITKR-FAADGFLPVVVVSPTVESLMREGMRNT 603 Query: 618 GG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 LEP ++ + Q ++ + G PVL++ +R + L L VL Sbjct: 604 EEGNFLILEPSISAYIAKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNILYEHGIHLPVL 663 Query: 673 SNLELS 678 + E++ Sbjct: 664 AYQEIT 669 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 376/704 (53%), Gaps = 71/704 (10%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 L++ I+S+M+LPLP +DLL NI +S+ +L+V M+ +AFP++LLFTTL RL Sbjct: 18 LVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRL 77 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 +LN+AST+ IL+ A AG ++E+FG +VGGN +G+VVF I+ + F+VI KG+ Sbjct: 78 SLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSE 132 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 R+AEVGARF LD +PGKQM+IDADL +GL+ +EA+K+R+ + E+ +G MDGA KFV+ Sbjct: 133 RVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLAVESQLHGGMDGAMKFVK 192 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 GDAIAG++I +INIV G+ VGV HGMS G AA +++L++GD +V+QIP+L++S AAGV Sbjct: 193 GDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQIPSLLLSVAAGV 252 Query: 267 IVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 ++TRV+ + + +G+++ +QL S+ + +A +L VPG P +F+L A L Sbjct: 253 MITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALA 312 Query: 322 GLAWWI-----------RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370 + + RG+EQ+A ++ + + + VG R Sbjct: 313 FAGYRLSRKGSPSSGAARGQEQEA------LRAMQRSGAKADVPPILPRAPQFACAVGVR 366 Query: 371 LIPMVDFQQDGELLGRIRSI----RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK--- 423 + P + G L R+ R + E+G P V + + L A + +L+ Sbjct: 367 IAPDL---ASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATFEVLIHDVP 423 Query: 424 --GVEIGSGDAYPGRWLAINPGTAAGTLPGEAT-------------VDPAFGLNAIWIES 468 V + + A + ++P AA T +A +D A G WI+ Sbjct: 424 HLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPID-ASGQATHWID- 481 Query: 469 ALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLV 528 E A +V A ++A I HA G QE Q +LD++ + P L +++ Sbjct: 482 ---EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVL 538 Query: 529 PGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQ 588 ++ T + VL+ LL+E++ IR++RTI+E+L + D LT VR L R + Sbjct: 539 K-ILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAH 597 Query: 589 QWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQE---ALSRQE 640 + G+ + + D E+ + QA++ L P A RL+ + Q A +R + Sbjct: 598 RAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLVGANARTD 657 Query: 641 MLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 + L+ + +R + R + R + L V S EL ++ +R Sbjct: 658 I-----ALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELR 696 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 233/625 (37%), Positives = 347/625 (55%), Gaps = 60/625 (9%) Query: 21 ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80 LAG I+ ++++ +LPLP LD + + N+A S+++L V+ + + F++FP +LLF Sbjct: 50 FLAG--FIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFSSFPALLLF 107 Query: 81 TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140 TTL RLALN+AS ++IL+ A AG V++AFG +VG N +G VVF+++ ++ F+V Sbjct: 108 TTLFRLALNIASCKLILLH-----ANAGHVIDAFGRLVVGNNVVVGGVVFLVIAVVQFIV 162 Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200 I KG+ R+AEVGARF LD MPGKQM+IDADL AG+I DEA++RR + QE+ +G+MDG Sbjct: 163 IAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQESQMHGAMDG 222 Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260 A KFV+GDAIAG++I INIV G+ VG L HGM +G A + Y +LT+GDG+ +QIP+L++ Sbjct: 223 AMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMASQIPSLLV 282 Query: 261 STAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316 S AAG++ TRV+T + +GEQ+ QL ++P +L++A VL +VPG P F L Sbjct: 283 SIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGFPKWSFALI 342 Query: 317 TAGLLGLAWWIRGREQKAPA----------------EPKPVKMAENNTVVEATWNDVQLE 360 GL A R+ AP+ +P V A T + A V L Sbjct: 343 ALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA----VSLS 398 Query: 361 DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRI 420 D L + +L + S + + ++G + P + + D+ YRI Sbjct: 399 DDLRTTLNL-----------AQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRI 447 Query: 421 LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQI 476 ++ V G PG WL + LP A P AFG A+WI K Sbjct: 448 YLQDVLAAHGALKPG-WLLWD---GVAPLPERAERQPAEAFGPFATALWI----KPDGAA 499 Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536 + + +A H+ ++ QHA EL G QE Q L+ V +E P+L +L +V L Sbjct: 500 PDGKWLTSEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELTR-LVPLQR 558 Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPH-ELTAVVRVALGRAITQQWFPGKD 595 + +VL+ LL E+VPIR++R I E+L AP + D L +VRV L R IT + Sbjct: 559 VTEVLRRLLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAAR 618 Query: 596 EVHVI----GLDTPLERLLLQALQG 616 ++ V+ L +E +++ QG Sbjct: 619 QLRVVLFEQNLQERIESAVMRTKQG 643 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 135/262 (51%), Positives = 202/262 (77%), Gaps = 6/262 (2%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 M+LPLP ++D L N+ALS ++L+++M+ + L+F+ FPT+LLFTTL R+ LN+ +TR Sbjct: 33 MILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTR 92 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 +IL++ A AG+++ FG + +GGNF +G VVFVIL I+ F+VI KGA R+AEVGAR Sbjct: 93 LILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGAR 147 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD MPGKQM+IDAD+ AG+I +EA++RR+ V+QE+ YG+MDGA KFV+GD+IAG++ Sbjct: 148 FTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMI 207 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV-ST 273 + ++NIVGG ++G+ QHGM+ G A +Y +LTIGDGLV+QIP+L++S +AG+++TR + Sbjct: 208 VALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITRSGDS 267 Query: 274 DQDVGEQMVNQLFSNPSVMLLS 295 +VG Q+ Q+F P +L++ Sbjct: 268 GGNVGAQIGGQIFGQPKALLMA 289 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 151/361 (41%), Positives = 236/361 (65%), Gaps = 11/361 (3%) Query: 31 ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90 +++M+VLPLP +LD+L FN++ + +VL+ + + LE + FP ++L TL RLAL + Sbjct: 26 VVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLKSVLEISTFPAVILIGTLFRLALTI 85 Query: 91 ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150 +STR++L + A AG+++ AFG F+V GN +G+++F+I+ ++ F+V+TKGA RIAE Sbjct: 86 SSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVGLIIFLIVALVQFIVVTKGAERIAE 140 Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210 VGARF LD MPGKQ+AID+DL G I + A+KRRS + QE+ F+G+MDGA +FV+GDA+ Sbjct: 141 VGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRSRLEQESQFFGAMDGAMRFVKGDAV 200 Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270 AG++I+ +N++GGL +G+ Q G+S AA YTLL+IGDGLV+QIP+++++ +AG++VTR Sbjct: 201 AGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLSIGDGLVSQIPSILMAVSAGIVVTR 260 Query: 271 VSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328 VS D + +G + +LF P + ++AA+ G VPG P V L GLA+ + Sbjct: 261 VSDDGNGSLGSDIGRELFREPRALAIAAALTICAGFVPGFPTGVLGAIGLCLAGLAFMVH 320 Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL-GRI 387 R + PA E+ + + D + V + ++ + GE+L GRI Sbjct: 321 -RRRAGPAAAGSANAVESAN--SYPLDRTKYGDPVIATVAVETLARLEAMRLGEMLDGRI 377 Query: 388 R 388 R Sbjct: 378 R 378 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 223/661 (33%), Positives = 355/661 (53%), Gaps = 76/661 (11%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 +M+LPLP ++D L NI LS+++L+V M+ ++ ++FP++LLFTTLLRL+LN+AST Sbjct: 30 LMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAST 89 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 + IL+ A AG ++E+FG +VGGN +G+VVF+I+ + F+VI KG+ R+AEVGA Sbjct: 90 KSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGA 144 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD MPGKQM+IDADL G + DEA+++R+ + E+ +G MDGA KFV+GDAIAG+ Sbjct: 145 RFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGL 204 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I ++NI+ G++VGV HGM+ G AA + +L++GD +V+QI +L+IS AAGV++TRV+ Sbjct: 205 VITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVAN 264 Query: 274 DQD-----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--W 326 + + +G + QL SN ++ ++ +L VPG P ++FLL A + + W Sbjct: 265 ENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTIW 324 Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATW---NDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383 + R+ + K + EA N L M + +L ++D L Sbjct: 325 RKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLD---PARL 381 Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443 I S R++ + +G P + I LQ +Y +L+ V P Sbjct: 382 DQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDV----------------PE 425 Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA-AE 502 T A E T D +++AL QA + HA A Sbjct: 426 TRAEL---ENTDD---------MQAALARQA--------------------ISPLHARAH 453 Query: 503 LF-GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 LF G QE Q +L++VA + P L + V + + VL+ LL+E++P+R++++ILE+L Sbjct: 454 LFVGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESL 512 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618 P + D LT VR LGR + G ++ + LD +E+L+ Q+++ Sbjct: 513 VVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGN 572 Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P A++L+ Q + + P ++ + +R + R + L L V S E Sbjct: 573 FLALPPEQANQLVEQVERIVGDHAQ--HPLAVVASMDVRRYVRRMIEARLTWLQVYSFQE 630 Query: 677 L 677 L Sbjct: 631 L 631 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 236/677 (34%), Positives = 366/677 (54%), Gaps = 57/677 (8%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 +++PLPA++LD N+A S+ +L+ A+ + L+ +FPT+LLFTTL RLALNV+STR Sbjct: 30 LIIPLPAWLLDAGLAVNLAASVALLVAALRARDALKVTSFPTLLLFTTLFRLALNVSSTR 89 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 + L EGH AG V++AFG F+V G++ +G VVF IL ++ +V+TKGA R+AEV AR Sbjct: 90 LALAEGH-----AGDVIQAFGEFVVRGDYVVGAVVFAILTLVQLLVVTKGAERVAEVSAR 144 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD MPGKQM+IDADL AG I + +A++RR ++ +E+ +G+MDGA KFV+GD IAG++ Sbjct: 145 FTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLERESQMFGAMDGAMKFVKGDVIAGLV 204 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274 I+ +N++GG ++GVLQ GM + AA ++ L+ IGDGLV+Q+P+L I+ AAG++VTRV+++ Sbjct: 205 IVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGDGLVSQVPSLCIAVAAGLVVTRVASE 264 Query: 275 QD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF------------LLFTAG 319 ++ +G ++ Q F + + A + L L+PGMP++ F +L AG Sbjct: 265 KEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMPGMPHVTFLLLAGGLGGLGHVLSRAG 324 Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 + + E+KA A V E+ + V + L +++ L + + + Sbjct: 325 VPKV-------EEKAGAPADGVAPGAAGAPPESAASPVGV-SPLTLDMAPDLTVLAEAEG 376 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRILMKGVEIGSGDAYPGRWL 438 + + +R + E+G P + +R L P YR+L+ V G G PG Sbjct: 377 AAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVLVDEVPAGGGQVLPGALY 436 Query: 439 AINPGTAAGTL--PGEATVDPAFGLNAIWI-ESA--LKEQAQIQGYTVVEASTVVATHLN 493 A+ P L EA +P+ G I ESA L E AQ+ + +V+ H+ Sbjct: 437 ALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQV---PLRRPGELVSDHVR 493 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 ++ AA+L G Q+ Q LL+ + + P L ++ + V L L VL+ LL E V IRD Sbjct: 494 AILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTDVLRKLLQEGVSIRD 552 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 +R ILE L + D L R AL R ++ ++ P ++ +D +E +L Sbjct: 553 LRAILEALVSPT-TEGDAVALAERCRQALRRYLSHKFAP-TGPLYAYLVDPEVEEVLR-- 608 Query: 614 LQGGGGLEPGLADRLLAQTQEALS------RQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 G+ R LA E ++ RQ VLL +R L R + P Sbjct: 609 ---------GMGPRGLAPDPERVAEILEGVRQVATEGRAVLLTAPDVRRPLRRLCEGAFP 659 Query: 668 QLVVLSNLELSDNRHIR 684 + VL+ EL IR Sbjct: 660 DVAVLTYGELDGALQIR 676 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/304 (47%), Positives = 215/304 (70%), Gaps = 8/304 (2%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 + ++ I+++++LPLPA ++D+L NIA+ +++LL + + L+F+ FPT+LL +TL R Sbjct: 23 VAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTLHITKPLDFSTFPTVLLLSTLFR 82 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+L++A+TR+IL A G +++ FG + GGN +G+VVF+I+ ++ F+VI+KGA Sbjct: 83 LSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNLIVGLVVFLIVTVVQFIVISKGA 137 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++RR + E+ +GS+DGA KFV Sbjct: 138 ERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLELESKLHGSLDGAMKFV 197 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIA I+I++IN+VGGL VGV HGM G A + +++LTIGDGLVAQIPAL + AAG Sbjct: 198 KGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGDGLVAQIPALFSAMAAG 257 Query: 266 VIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 ++VTR S D +G +V Q+ S P V+ +A + L+ L+PG P VF+ L Sbjct: 258 LLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIPGFPAAVFIGIAFALGS 317 Query: 323 LAWW 326 A W Sbjct: 318 AAAW 321 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%) Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 +A + L+ ++AA G QE +L+R+ + P L +++V V + + +VL+ L +E Sbjct: 437 IAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVVRAVSS-PRIAEVLRLLAEE 495 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP-GKDEVHVIGLDTPL 606 +V +R++R +LE +AE + + + RVAL R I G+ V V+G L Sbjct: 496 EVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHMADGRFPVLVVG--GRL 553 Query: 607 ERLLLQALQ 615 ER LQ Sbjct: 554 ERFFRDNLQ 562 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 223/685 (32%), Positives = 346/685 (50%), Gaps = 62/685 (9%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I +L +L +++ PLP LD++ N+ +S+++L ++++ L + FPT+LL TL R Sbjct: 24 IAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTFPTLLLVATLFR 83 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L LN+A+TR IL+ G+ AG ++ FG +VGG+ +G VVF+I+ II F+V+ KGA Sbjct: 84 LGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIAIIQFVVVAKGA 138 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + FYG+MDGASKFV Sbjct: 139 DRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGASKFV 198 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAG+LI ++N+VGG+++G +G + A YT+LT+GDGLV+QIP+L+IS AAG Sbjct: 199 KGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLISFAAG 258 Query: 266 VIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 +++TRV+ + VG + +Q+ S P + +A V LVPG P L FL L Sbjct: 259 ILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGVLLAL 318 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQ------LEDSLGMEV--GYRLIPM 374 LA I P+ M + + W + +E LG V RL P Sbjct: 319 LAALI----------PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRVRLAPE 368 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 + Q L R+ ++ +E G P + + + L Y + + V I G Sbjct: 369 LFDQLKPLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQLER 428 Query: 435 GRWLAINP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 + G + +LPG A + + +E ++ + Sbjct: 429 TQGEGERKRGLSLPSLPGRAGAETG---------------------SQMEIEAMLVGRIG 467 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 I G QEA L D +++ P+L +++ + L VL LL V IR+ Sbjct: 468 DAICAKPWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTGVGIRN 526 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 +R I E L + + +D L + R AL I+ QW + + + L LE +L Q Sbjct: 527 LRAIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQR 586 Query: 614 LQGGGGL---------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664 L G + + +++A Q + ++ GA VL+ LR + LR Sbjct: 587 LIASGQIKFIDLQVDEQHAFVQQVIADMQT--TWRDHPGA--VLVTGQDLRRSVEALLRG 642 Query: 665 SLPQLVVLSNLELSDNRHIRMTATI 689 + VL+ E+SD R+ TI Sbjct: 643 GERGVTVLAVEEISDEVTYRVLHTI 667 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219 MPG+QM+IDADLN G I + EA++RR + +EA FYG+MDGASKFV+GDAIAGI+I++IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279 I+GGL++GV+QH + A ++Y+LLTIGDG+V Q+PAL+I+ G+IVTR ++D ++ + Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 280 QMVNQLFSNPSVMLL-SAAVLGLLGL--VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336 +++ Q+ S P +LL AA+ GLL +P +P LV + A + + + R A Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVY----RNASNSA 176 Query: 337 EPKPVKMAENNTVV---------EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387 E + + + +Q+E + + VG +V Q L+ RI Sbjct: 177 EDGTAPADAQDAAQPADAAQKGEDDPYASLQVE-PIEVHVGSEWAALVS-QPGSVLMDRI 234 Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447 + RK+ AQ++G + P V +D L RY I + GV G G+A R LAI+P Sbjct: 235 ATFRKQHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTD 294 Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507 +PGE T DP +GL A+WIE + A + +T+V+A TV THL ++ + +A L R Sbjct: 295 GMPGEPTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRA 354 Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 E +LL+RV Q L E+L+P V++++ Sbjct: 355 EVDRLLNRVRQNQASLVEELIPTVLSVS 382 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 181/674 (26%), Positives = 335/674 (49%), Gaps = 80/674 (11%) Query: 29 LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88 L+ +++++ LP ++D + S ++L++ + + L+ PT++L T RL L Sbjct: 21 FLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKVTFLPTMVLLLTTFRLLL 80 Query: 89 NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148 ++A+TR I+ G+V+E G F++GGN G+++FVI+ I+ F+V+TKG R+ Sbjct: 81 SIATTRNII-----ANEDVGRVIETIGEFVMGGNLISGLLIFVIITIVQFLVVTKGGERV 135 Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208 AEVGARF LD +PGKQM ID DL +GLI ++A+K R+++ E +GS+DGA KFV+GD Sbjct: 136 AEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTENKLFGSLDGAMKFVKGD 195 Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268 AIAGILI ++N+ GG+ VG+ Q +S+ + + +++LTIGDGLV+QIP+L++S A GV + Sbjct: 196 AIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGLVSQIPSLLLSMACGVYL 255 Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--PNLVFLLFTAGLL----G 322 TR+ +D ++Q+ + S V+G++ ++ G+ P L+++ +L Sbjct: 256 TRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNPTLMYVCLPLAVLCIVMA 315 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382 L W + + +P E + V E+ ++ +R D Q Sbjct: 316 LLLWKKNENTAVAVKVEP----EGSGVFES------------LKFVFR-----DAQYQHL 354 Query: 383 LLGRIRSIRKK-FAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 + R++ + + + Q +G P V ++ ++D+ A Y + GV+ + Sbjct: 355 IKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGVQT----------YQFS 399 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 ++ G + E D F L+ + S + +++ I Sbjct: 400 QNSSEGIV--EILNDDVFNLHD-------------------DLSANLDEIISYFIQTRLV 438 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 E + Q + ++ +A + ++ + + V L +H VL+ ++ D + E+L Sbjct: 439 EKYNLQYSSNIVAELASQ-SEIMKSEIDSAVGLNRVHDVLKQMIRSPEFYLDRVSFFESL 497 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621 + ++SDP +R IT + ++HV+ L L + + G E Sbjct: 498 IYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPELT----EEISGYVAGE 553 Query: 622 PGLADRLLAQTQEALSRQ--EMLGAP---PVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 +RL+ + Q AL + ++ + PVL+VN L+ F+++ + L+V S+ + Sbjct: 554 FEDFERLI-EIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQVMSTLLVCSHTD 612 Query: 677 LSDNRHIRMTATIG 690 + DN I + I Sbjct: 613 IVDNNCISSSEVIN 626 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 208/347 (59%), Gaps = 17/347 (4%) Query: 4 LAAMLRLPANLKSTQWQILAGP--ILILLILSMMVL-PLPAFILDLLFTFNIALSIMVLL 60 + A LRL ++LK + +L P +LI +L ++L LP ++D + S ++L+ Sbjct: 1 MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 + + L+ PT++L T RL L++A+TR I+ G+V+E G F++G Sbjct: 60 IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNII-----ANEDVGQVIETVGQFVMG 114 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GN G+++F+I+ I+ F+V+TKG R+AEVGARF LD +PGKQM ID DL +GLI ++ Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 A+K R+++ E +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q +S+ + Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298 +++LT+GDGLV+QIP+L++S A GV +TR+ D + QL + S Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294 Query: 299 LGLLGLVPGMPNLVFLLFTAGLL--GLAWWIRGREQKAPA----EPK 339 + ++ L PNL+++ +L GLA W+ ++ A EPK Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPK 341 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 17/225 (7%) Query: 476 IQGYTVVEASTVVATHLNHLIS----QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531 IQ + AS VA++LN++IS E + Q + ++ +AQ+ ++ + + Sbjct: 416 IQNDELFVASADVASNLNNIISYFIHHRFIEKYNLQYSNNIVAGLAQQ-SEIMKSEIDSA 474 Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591 V L +H VL+ ++ D + E L + ++SDP +R IT Sbjct: 475 VGLNRVHDVLKQMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLL 534 Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEM------LGAP 645 + +V+V+ L TP L + + G E DRL+A Q L R E+ G Sbjct: 535 NQEGKVNVVLL-TP---ELTEEISGFVAGEFDDVDRLIA-VQTGL-RNEIKRLLVQYGVK 588 Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 PV++VN ++ F ++ + ++V S+ ++ ++ I + TI Sbjct: 589 PVVVVNENELNVVKAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 132/314 (42%), Positives = 179/314 (57%), Gaps = 13/314 (4%) Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445 RI + R ++A E GF+ P V RD+ L P Y++ + G G YPGR LAI+P Sbjct: 20 RIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLAIHPAGV 79 Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 G LPG AT +PAFGL A+WI+ +++A+ G+T V+ T + TH+ LI HAA LFG Sbjct: 80 TGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTHAARLFG 139 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 R E LLD V P L +++VP V+ + + +VLQ LL E+VPIRD+ I++TLA+ A Sbjct: 140 RAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQTLADVA 199 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----L 620 + DP L VR LG AI Q+ +D + V+ LD LE + + L G G L Sbjct: 200 RHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADGHGTHVL 259 Query: 621 EPGLAD----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 +P LA+ RLLA T E + RQ G P LL +R L F RR P+LVVLS E Sbjct: 260 DPRLAEPFLGRLLAHT-ETMMRQ---GHTPALLCRPDIRRALKTFSRRVAPRLVVLSINE 315 Query: 677 LSDNRHIRMTATIG 690 + D +R AT+G Sbjct: 316 VPDAIPLRAFATVG 329 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 182/292 (62%), Gaps = 11/292 (3%) Query: 54 LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113 +++VL+ + +R L+FAAFP +LL T RL LNV++TR+IL + A AG+V++A Sbjct: 37 CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91 Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173 F +V G+ +G V+F ++ I ++VI +GA R+AEV ARF LD +PG+Q+AID + Sbjct: 92 FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151 Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233 G IG DEA+ RR+E+ + ADF+G MDG + V+GDA+ G++I IN+VGG +G ++ G Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIG-MRQGA 210 Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293 + + Y L +GDGL+AQ+PA++++ AA ++V+RV + P ++L Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345 A +L +L VPGMP L F GLL +A ++ +APA K + E Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYL----TRAPAAAKKLASPE 317 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 9/348 (2%) Query: 344 AENNTVVEAT-------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396 AE VEA+ W D L +EVG LI +V + + R+ ++R + A Sbjct: 97 AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIV-APESKDFFDRMTAVRCQLAD 155 Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456 +G + P + +RDN L YRIL+ E+ PG+++A++ GTA TL G VD Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215 Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 P FG IWI + + +A+ GY V+E S ++ THL + +H+ E+ + ++L++ Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 + E+L ++L+T+H VL LL+E V I++ +LETL H D L A Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635 VRV LGR I Q++ VH IGL+ LE LL+ G G + +RL+ ++ Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395 Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 + E P L+ + LR L R + LP++ VLS E+ N I Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 176/305 (57%), Gaps = 15/305 (4%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N + + W+I+A P IL L + LP +++D N+A S+ ++ + + Sbjct: 30 NFRGSSWKIVAIPSCILFTL---IFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FP++LL+ LLRL LN+ASTR IL G A ++ A G+F G+ + + V ++ Sbjct: 87 IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG A ++S + +E+ Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 D++ +M+G +FV+GDAI +++ +NI+ L +G H + L +GD LV Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDLW-------LTVLGDALV 254 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +QIPAL+ S AA ++ +V + + + +++ + L A +L + +PG P + Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314 Query: 313 FLLFT 317 L F+ Sbjct: 315 ILGFS 319 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%) Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I Q A E + +L+D + E+++P ++ +L +L+ L+ E+V + Sbjct: 410 IRQLAPETISERFVTRLVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSLHLFP 469 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 ILE + + + EL VR LG+ I + +D + VI +D+ +E+ + + + Sbjct: 470 KILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVRDSQE 529 Query: 616 GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675 + L ++++AQ + L E G ++ R L R + P L+VL++ Sbjct: 530 ---KVVLDLNEKVVAQVKHLLRVGE--GNFRAIVTGSETRKELKRIVDPYFPDLLVLAHS 584 Query: 676 ELSDN 680 EL + Sbjct: 585 ELPEE 589 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 170/320 (53%), Gaps = 23/320 (7%) Query: 29 LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88 L IL ++ LPLP +LD + ALS++ + + FP L+ LLRL L Sbjct: 16 LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75 Query: 89 NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148 N+ASTR I+ G A ++ + G F G+ ++L +NF++++KG+ RI Sbjct: 76 NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130 Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208 AEV +RF L+ +P KQMA+D+DL +G KK+++ + +E DF+ +M+G +FV+GD Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190 Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268 AI +++++N+V V L + + G+A E +GD LV+Q+PAL+ S AA ++ Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245 Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL----LGLVPGMPNLVFLLFTAGLLGLA 324 +++ D E ++N LF + V+ L L +P P F LL Sbjct: 246 SKI----DKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPK-----FPIVLLASL 296 Query: 325 WWIRGREQKAPAEPKPVKMA 344 W+ R+++ +E ++ A Sbjct: 297 LWLAYRKEEPASEDSCIERA 316 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 10/216 (4%) Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 VE + L+ L++ H +L R+ Q+L + + PKL E+LVPGV++L+ L KVL Sbjct: 8 VEPDALAQLPLDELVACHECDLLLRKPVLQVLSKAS---PKLAEELVPGVISLSGLLKVL 64 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q LL E+VP+RD+R+I E +A +A D L AVVRV L RAI Q + E+ VI Sbjct: 65 QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124 Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 L+ LE++LL +LQ G LEP +A++L EA RQEM G P +LLV + Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R +LSRF R ++P L VL+ E+ DN+ + + AT+G Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 130/197 (65%), Gaps = 6/197 (3%) Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224 M+IDADL AG++ ED KKRR + E+ YG++DGA KF++GDAIAGI+I+ +N++GG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282 VG++QHGM + A YT L+IGD LVAQIPAL+IS + G IVTRV + + ++G +++ Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPK 339 LF+N S ++++A + +G +PG P VF++ +A L+ + + W R R + E Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKW-RNRHKNKSGESH 179 Query: 340 PVKMAENNTVVEATWND 356 K A++ EA D Sbjct: 180 REKGADDEAQSEAVTID 196 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 108/386 (27%), Positives = 187/386 (48%), Gaps = 20/386 (5%) Query: 307 GMPNLVFLLFTAGL--LGLA---WWIRGREQKAPAEPKPVKMAEN--NTVVEATWNDVQL 359 G+P F L + +G+A R RE A K + AE V+A+ Q+ Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 E LG ++ RLI + EL R+ +R+KFAQE GF+ P + + D++ L P YR Sbjct: 181 ELCLGKQLSARLIASQE-----ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYR 235 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 I + G + S + G L + ++PGE +PAFG+ A + + +GY Sbjct: 236 IKIHGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGY 295 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 V+ +V+ THL+ ++ + A+L ++ + LLDR+ E KL ED+ P ++ + L Sbjct: 296 MTVDNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQA 355 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VL+ LL E++ IR++ ILE +AE AP+ P + VR+ + + I ++V Sbjct: 356 VLKLLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGD-LSDNGVLNV 414 Query: 600 IGLDTPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 + L + + Q+L+ ++P L ++ + A+ + G VL+ + Sbjct: 415 LRLGNRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSP 474 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELS 678 RP + + R L VLS++E++ Sbjct: 475 EARPYIRMIIERLFATLPVLSHVEIA 500 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 71/109 (65%), Positives = 91/109 (83%), Gaps = 6/109 (5%) Query: 3 NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62 NL A++ PANL+ +L P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVA Sbjct: 6 NLRALMA-PANLR-----MLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVA 59 Query: 63 MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111 M+T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG AAGKV+ Sbjct: 60 MYTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/117 (48%), Positives = 72/117 (61%), Gaps = 5/117 (4%) Query: 580 VALGRAITQQWFPGKDEV-HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQE 634 VA R + + G D V+ LD LER+L QA+ GGG +EP LAD LL E Sbjct: 87 VASTRIVLLEGHTGPDAAGKVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAE 146 Query: 635 ALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 RQE +G PPVLLV LR LLSRFLRR++P L V++N E+ + R IR+TA +GG Sbjct: 147 VAQRQEDIGLPPVLLVPPQLRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203 >UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C0AUZ1_9ENTR Length = 111 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 66/78 (84%), Positives = 74/78 (94%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL Sbjct: 1 MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60 Query: 61 VAMFTQRTLEFAAFPTIL 78 VAMFT+RTL+FAAFPTI Sbjct: 61 VAMFTKRTLDFAAFPTIF 78 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 6/199 (3%) Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 + ++A HL+ ++S+HA+ G QEA+ LLDR+ + P L + V ++ + + ++ Q L Sbjct: 88 ARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLVRE-VTRLLPVQRIAEIFQRL 146 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 + E+V IRD+R+ILE L E + + D LT VR AL R I+ G++ + I LD Sbjct: 147 VQEQVSIRDLRSILEALIEWSAKEKDTVMLTEYVRSALKRQISYMHSRGQNMLPAILLDP 206 Query: 605 PLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 +E + +A+ Q G LEP + +R + +A PV++ + +R + Sbjct: 207 GVEETIRKAVRQTSAGAFLALEPAVTERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVR 266 Query: 660 RFLRRSLPQLVVLSNLELS 678 R + L V+S EL+ Sbjct: 267 RLIEGDHYTLAVMSYQELT 285 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 465 WIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLT 524 W+++ QA+ G VE + T L + ++ AE G QE + L+D + +L Sbjct: 113 WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV 172 Query: 525 EDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGR 584 ++L + + + ++LQ L++E + IRD+RTI L AP + D LT VR+AL R Sbjct: 173 KEL-QRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRR 231 Query: 585 AITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGGLEPGLADR----LLAQTQEALSRQ 639 + +++ K + V+ L +E L+ ++ Q G L +R +L + + A + Sbjct: 232 HLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAEN 291 Query: 640 EMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + VLL +R + + + R L L VLS EL D ++++ TI Sbjct: 292 Q----DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTI 337 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 4/117 (3%) Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293 A +Y++L+IGDGL QIP+L+IS +AG+IVTRV + Q++ ++ +Q+ P ++ Sbjct: 1 SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV 350 L+A VL LL L+PG P + F+A LL L I R +K+ V+ E +++V Sbjct: 61 LTAVVLMLLALIPGFPFITLAFFSA-LLALP-IILIRRKKSVVSANGVEAPEKDSMV 115 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 438 LAINPGTA-AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 LA++ G A G L G+ DP FGL+AIWI+ + A GY VV+A TV+ATHLNH++ Sbjct: 8 LALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHVL 67 Query: 497 SQHAAELFGRQEAQQLLD 514 + +A EL G E Q LLD Sbjct: 68 TVNATELLGPDEVQALLD 85 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 4/102 (3%) Query: 595 DEVHVIGLDTPLERLLLQALQGGG----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650 ++++V+ ++ LE+++ A G G++P LA+ L QT +A RQE LG PVLLV Sbjct: 4 EDLNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLV 63 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 ALR ++R L+R+ P L VLS+ E+ +NR IR+ +G K Sbjct: 64 PDALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 22/180 (12%) Query: 229 LQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSN 288 ++ ++GH +TLLTIGDG+ Q+PAL+IS A G+IVTR ++D+++ ++ QL S Sbjct: 1 MEWSEALGH----FTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSV 56 Query: 289 PSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT 348 P + L+ AAVL L L+PGMP ++ G + W R R+ A A +PV Sbjct: 57 PRIPLIVAAVLAALLLLPGMPKWPIVVI--GTIAFVAWRRIRKAAAEAAAEPVD------ 108 Query: 349 VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE---LLGRIRSIRKKFAQEMGF-LPPV 404 +V E + + RL + GE ++ RI +R+ ++ G PP Sbjct: 109 ------EEVAAESTASPPLEIRLGEALSGAWAGEGALVMDRIAGLRRVHEEQFGLPFPPC 162 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 1/204 (0%) Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449 +R +F + G P V +RD L +L+ + + Y +N + Sbjct: 63 LRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSF 122 Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509 T+ W+ E+ + GY + A + L ++++ E FG QE Sbjct: 123 GINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQET 182 Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569 + +LD++ + P L ++++ T+ + +VLQ LL E+V +R+M+ I+E LA AP + Sbjct: 183 KHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREK 241 Query: 570 DPHELTAVVRVALGRAITQQWFPG 593 D L +R A+ R I ++ G Sbjct: 242 DVINLVEHIRGAMARYICHKFANG 265 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 825 0.0 UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 799 0.0 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 794 0.0 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 791 0.0 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 786 0.0 UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 785 0.0 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 783 0.0 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 782 0.0 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 779 0.0 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 774 0.0 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 773 0.0 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 768 0.0 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 768 0.0 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 765 0.0 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 765 0.0 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 758 0.0 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 755 0.0 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 752 0.0 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 750 0.0 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 750 0.0 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 750 0.0 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 749 0.0 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 747 0.0 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 746 0.0 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 742 0.0 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 738 0.0 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 735 0.0 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 731 0.0 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 730 0.0 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 728 0.0 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 725 0.0 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 724 0.0 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 724 0.0 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 723 0.0 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 722 0.0 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 722 0.0 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 720 0.0 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 715 0.0 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 715 0.0 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 714 0.0 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 708 0.0 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 707 0.0 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 705 0.0 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 705 0.0 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 703 0.0 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 701 0.0 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 697 0.0 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 695 0.0 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 694 0.0 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 692 0.0 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 691 0.0 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 682 0.0 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 678 0.0 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 676 0.0 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 674 0.0 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 669 0.0 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 667 0.0 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 663 0.0 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 663 0.0 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 658 0.0 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 656 0.0 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 652 0.0 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 651 0.0 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 650 0.0 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 648 0.0 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 648 0.0 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 647 0.0 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 646 0.0 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 645 0.0 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 634 e-180 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 633 e-180 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 629 e-178 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 626 e-178 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 625 e-177 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 623 e-177 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 618 e-175 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 618 e-175 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 617 e-175 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 613 e-174 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 611 e-173 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 608 e-172 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 607 e-172 UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 604 e-171 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 602 e-170 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 601 e-170 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 579 e-163 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 574 e-162 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 572 e-161 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 552 e-155 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 546 e-153 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 546 e-153 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 524 e-147 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 507 e-142 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 485 e-135 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 462 e-128 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 403 e-110 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 377 e-103 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 371 e-101 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 365 3e-99 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 352 2e-95 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 336 2e-90 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 325 2e-87 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 316 2e-84 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 293 2e-77 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 254 7e-66 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 251 7e-65 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 244 8e-63 UniRef50_UPI000190D087 possible secretory protein (associated wi... 214 9e-54 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 186 2e-45 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 124 1e-26 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 108 7e-22 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 102 7e-20 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 93 5e-17 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 86 6e-15 UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri... 83 4e-14 Sequences not found previously or not previously below threshold: UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl... 81 1e-13 UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T... 51 1e-04 UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re... 51 2e-04 UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ... 47 0.002 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 436/695 (62%), Positives = 554/695 (79%), Gaps = 4/695 (0%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M N +++LR+ +LK+TQWQILAGPILIL+ILSMMVLPL F+LD+ FTFNIALSI++LL Sbjct: 1 MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG +AG+V+E+FGHFLVG Sbjct: 61 VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++ Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M + A E Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---QKAPAEPKPVKMAENNTVVEATWNDV 357 +LGLVPGMPN++FL+FT L L+WW+ ++ + + ++ + EA+WNDV Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWLYEKKYDLENDFIKSNKKYKFIHDAISEASWNDV 360 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 +LED + +E+GY+L PM D + G+LL RIR +RKK AQE+GFLPP+V I++NM L Sbjct: 361 ELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNS 420 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 YRI +KGVE+G G + GR++AI+ G +LP E +P FGL+ WI+ K +AQ + Sbjct: 421 YRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKK 480 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 GY+V+E+S V++THLN LI+ H +LFGRQEAQQLL+RV + PKLTEDL+P + LT Sbjct: 481 GYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIF 540 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597 HK+L+NLL E VPIRDMRTILETL+EHA Q DP+ELT++VR+AL + I Q+ F + + Sbjct: 541 HKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNII 600 Query: 598 HVIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 +IGL+ LERLLL +L+ G +EP L++ LL QT+EA+ +Q ++G+P VLLV H+LR Sbjct: 601 EIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRY 660 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 LS+FLR++ P+L VLS E+ D + I+MT IG Sbjct: 661 FLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIGT 695 >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 321/695 (46%), Positives = 467/695 (67%), Gaps = 10/695 (1%) Query: 5 AAMLRLPANLKS---TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 A + LP L+ ++ L + +++++++M++PLP+ +LD + NIA++I++LL Sbjct: 11 LAAIGLPLKLQGISLKKYSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLT 70 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 ++ + L+F++FP++LL T+ RLALN+A+TR+IL+ G G +AAG+V+ AFG F+VGG Sbjct: 71 TIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILLHGGEGESAAGEVIRAFGQFVVGG 130 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N+ +G+++F ILVIINF+VITKGAGRIAEV ARF LD MPGKQMAIDADLN+GLI EDEA Sbjct: 131 NYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEA 190 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 ++RRSE+ QE++F+G+MDGASKFVRGDAIAGILI +INIV G ++GV Q +S +A+ Sbjct: 191 RRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQI 250 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301 YT+LT+GDGLVAQIP LVIS AG +VTR S D ++ + + Q+ + P V+L+SA VLGL Sbjct: 251 YTILTVGDGLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGL 310 Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGR--EQKAPAEPKPVKMAENNTVVEATWNDVQL 359 L ++PGMP + F L + +W++ R ++ + K + AE E Sbjct: 311 LAIIPGMPTVAFGLLAIAMGSWSWYLFRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLA 370 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 D L ++VGY LI +VD Q G+LL +IRSIR++FAQ+MGF+ P +HI+DN+ L+P Y Sbjct: 371 LDLLRLDVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYS 430 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 L+KGVE+G G+ PG +LA+ G G + G ATV+PAFGL A WI S +E+A++ GY Sbjct: 431 YLVKGVEVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGY 490 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 TVV+ASTV+ATH+ ++ HA E+ RQE Q LLD V++ PKL E+L+P +V+L + K Sbjct: 491 TVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQK 550 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VLQ LL E+V IRDM TILETLA++ I P +L +VR +L R+I +++ + + Sbjct: 551 VLQGLLRERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTA 610 Query: 600 IGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 + L E L+ +A+ G L P A +LL + + + + + PVL+ + Sbjct: 611 LVLGPDAENLVAEAIVSGDYGSYLSLSPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRV 670 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 RP + + L LP LVVLS E+ N + +I Sbjct: 671 RPFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 252/683 (36%), Positives = 412/683 (60%), Gaps = 14/683 (2%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + +L + ++P+P+F+LD++ FN+++++++L +F + L+ + FPT+ Sbjct: 3 KKTDLGVGLYLLCAVLFFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTL 62 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LLFTT+ R++LNV+STR+IL G+ G VV FG F+ GGN IG +VF++L+II Sbjct: 63 LLFTTIFRISLNVSSTRLILSTGNP-----GVVVNVFGQFVGGGNLVIGAIVFIVLIIIQ 117 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VI KG+ R+AEV ARF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+ Sbjct: 118 FVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGA 177 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA+K+V+GDA AGI+I +IN+VGG ++GV+ G+ + A + + LLTIGDGLV+QIP+ Sbjct: 178 MDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPS 237 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IS + G++VT+ S + D +++ QLF V+ + + VL +LG++ + N +L Sbjct: 238 LLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG 297 Query: 318 AGLLGL--AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIP 373 + + + E + + + + N V L D + +E GY +IP Sbjct: 298 LAVAFFVTGKNLDKKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIP 357 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 + D Q G+LL R+ IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ Sbjct: 358 LADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEIL 417 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 ++A+NPG + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL Sbjct: 418 FDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLT 477 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 +I H AEL RQ+ Q L++ + + P + ++L+P ++ L + KVLQNLL E + IRD Sbjct: 478 EVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRD 537 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 + TI ETLA+HA D LT VR L RAI+ ++FP + VI LD +E+ ++ + Sbjct: 538 LLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSS 597 Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 ++ L+P ++ + + + E LG +++ + +R + Sbjct: 598 VKQTEQGSYLSLDPDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKD 657 Query: 669 LVVLSNLELSDNRHIRMTATIGG 691 L+VLS E+ N ++ + Sbjct: 658 LIVLSYNEVESNVELQSVGMVTA 680 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 294/694 (42%), Positives = 435/694 (62%), Gaps = 26/694 (3%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K ++ + +L++LI+ MM++PLP ++LD+L NI +++LL + ++ LE AAF Sbjct: 10 KVLRYADVGMAVLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAF 69 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 PTILL TL RLALNV++TR++L+ G+ AG+++ AFG+F+VGGN+ +G VVF+ILV Sbjct: 70 PTILLMATLFRLALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILV 124 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 II F+VITKGA R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADF Sbjct: 125 IIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADF 184 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGASKFV+GDAIAG++I INI+GGL +GVLQ GM + A +Y+LLT+GDGLVAQ Sbjct: 185 YGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQ 244 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IPAL++STA G+IVTR + + D+G MV + N + + + +L L +VPG+P + F Sbjct: 245 IPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFA 304 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND-------------VQLED 361 L + + +A+ I+ +A + + + + D Sbjct: 305 LLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLPLLTVD 364 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 + +E+GY LIP+VD Q G++L RI +IR++ A ++G + P + IRDN+ L+P Y I Sbjct: 365 PMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIR 424 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 +KG E+G G+ P +LA++ G L G T +PAFGL A+WI +++QA+ GYTV Sbjct: 425 VKGAEVGRGELLPDHYLAMSTGGE-DLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTV 483 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V+ +V+ATHL+ +I ++ A+L RQE Q+L+D VA+ P +T+DL+ V++L + KVL Sbjct: 484 VDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVL 542 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q L+ E+V IRD+ T+ ETLA+H P L VR AL R IT + + V Sbjct: 543 QGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVLGVYT 602 Query: 602 LDTPLERLLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 L E+ + + ++G + P L+ A M G PVLL + +R Sbjct: 603 LSPRWEQRIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVR 662 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++ R + SLPQL V+S E++ + +R + Sbjct: 663 LVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 291/681 (42%), Positives = 435/681 (63%), Gaps = 14/681 (2%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + +L + M+V+P+P +LD+L FN+ +S+ +LLVAM T LEF+ FP++ Sbjct: 6 KRTDLMVMLFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSIFPSL 65 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TTL RL+LN+++TR+IL +G+ AG V++ FG+F++G N +G +VF+I++I+ Sbjct: 66 LLVTTLYRLSLNISTTRLILSQGN-----AGAVIQTFGNFVIGNNPVVGFIVFLIIIIVQ 120 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEADFYG+ Sbjct: 121 YVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFYGA 180 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIA ++I+ IN+V GL++GV S A +YT+L++GDGLV+QIPA Sbjct: 181 MDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQIPA 240 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L++STA G++V+R +TDQ++G +V Q+F + + + + LLGL+ + L + Sbjct: 241 LLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIPIA 300 Query: 318 AG---LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374 G + A R +QK E K + E + + +E + E GY LIP+ Sbjct: 301 GGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVE-PVEFEFGYGLIPL 359 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 VD +Q G+ + R+ IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+ G+ Sbjct: 360 VDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEILM 419 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 G WLA++PG + G T DP FGL A+W+ +K +A+ GYTVV+ +V+ATHL Sbjct: 420 GHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLTE 479 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 ++ +HA EL GRQ+ ++LL+ + Q P + ED+ PG ++L + +VL NLL+E VPIRD+ Sbjct: 480 VLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRDL 539 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 TILE LA+ D +LT VR L R I Q+ G+D + V+ D LER + QA+ Sbjct: 540 VTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQAV 599 Query: 615 --QGGG---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 QGG GLEP A + + +E + + G PVLLV+ +R LSR +RR +P L Sbjct: 600 VEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVPDL 659 Query: 670 VVLSNLELSDNRHIRMTATIG 690 VLS EL + I + Sbjct: 660 PVLSFAELDPSISIHSGGVVN 680 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 276/662 (41%), Positives = 419/662 (63%), Gaps = 12/662 (1%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP F+LD+L FNI+LS+++LLVA+ T+ L+F+ FPT+LL TL RL L+V++TR IL Sbjct: 22 PLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTMLLLVTLFRLGLSVSTTRSIL 81 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 G A AG V++ FG F++GGN +G +VF+IL++I F+VITKGA R++EVGARF L Sbjct: 82 -----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQFIVITKGAERVSEVGARFTL 136 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQM+IDADLNAGLI + EAK+RR ++ EADFYGSMDGASKFV+GDAIA I+I++ Sbjct: 137 DAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGSMDGASKFVKGDAIASIIIVI 196 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277 IN++GGL++G++Q GM M AA +YTLLT+GDGLV QIPAL+ISTA GVIVT+ +++ ++ Sbjct: 197 INMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPALLISTATGVIVTKAASEGNL 256 Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337 + Q+ + P ++ ++AA + LLGL + +V L + + Sbjct: 257 STDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSIAGLLAFAGYRLSKASLAKANF 316 Query: 338 PKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFA 395 + + + VQL D + E GY LIP+ D Q G+LL R+ IRK+ A Sbjct: 317 EEALLEEAPPEEPSGPESVVQLLQMDPIEFEFGYGLIPLADANQGGDLLDRVVMIRKQMA 376 Query: 396 QEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV 455 E+G + PV+ IRDN+ L+P Y I +KG + G+ ++A++ G ++ G T+ Sbjct: 377 LELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLDHYMAMSTGEQDDSIVGIETI 436 Query: 456 DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDR 515 +PAFGL A+W++ ++++A++ GYTVV+ TV++THL ++ HA EL GR+E +QL+D Sbjct: 437 EPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEVLKAHAYELLGREETKQLIDH 496 Query: 516 VAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELT 575 + + P L E++ P +T + KVL+NLL E++ IR++ I E LA++ P+ D + +T Sbjct: 497 LKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLPVIFEALADYGPLTKDMNVVT 556 Query: 576 AVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLA 630 VR AL R IT Q G +E+ VI L +E+ + A+ L P + +L Sbjct: 557 EYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIGQNENGSFLALAPADSQAILQ 616 Query: 631 QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 T + + + LG V+L + A+R + + + R LP + V+S EL + ++ + Sbjct: 617 NTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVPVVSYNELEPDVEVQSVGVVN 676 Query: 691 GK 692 + Sbjct: 677 AE 678 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 783 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 365/722 (50%), Positives = 492/722 (68%), Gaps = 44/722 (6%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 ++ L+ PIL+L++L MM LPLPAF+LD F+FNIALSI+VLLVA+++ R L+FA Sbjct: 25 IRGAGRGNLSVPILLLMLLGMMTLPLPAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAV 84 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPTILL TLLRLALNVASTR++L+EGH G AAGKV++AFG ++GGN+A+G+VVF+IL Sbjct: 85 FPTILLIATLLRLALNVASTRVVLLEGHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIIL 144 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 +IINF+V+TKGAGRI+EV ARF LD MPGKQMAIDADLNAG+I +DEA+ RR +V EAD Sbjct: 145 IIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEAD 204 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 FYG+MDGASKFVRGD++AGILI++INI GGLLVG++QH + A E Y LLTIGDGLVA Sbjct: 205 FYGAMDGASKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVA 264 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 QIP+L++S AA ++VTRV++ +D+ Q+++Q+F +P + ++ ++ ++G +PGMP+ F Sbjct: 265 QIPSLLLSVAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPF 324 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEP----------------------------------- 338 + LA++I R Q+A Sbjct: 325 ITLAIICGILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSA 384 Query: 339 -KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397 + +++ E +W+DV D +G+EVGYRLIP+VD Q GELLGRI+ +RKK +Q+ Sbjct: 385 RQGNPPPQSSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQD 444 Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457 +GFL P VHIRDN+DL P+ YRI + GV IG G+ +P ++LAINPG G+L G T DP Sbjct: 445 LGFLIPAVHIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDP 504 Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVA 517 AFGL AIWI+ A +EQAQ GYTVV+ STVVATHLN +I H EL G +E Q+ LD + Sbjct: 505 AFGLEAIWIDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLG 564 Query: 518 QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAV 577 ++ PKL E+LVP +++ L K LQ LL E+VPIRDMRTI E LA H D LT++ Sbjct: 565 EKSPKLVEELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSI 624 Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG--------GGGLEPGLADRLL 629 RV+L R I Q + VI LD LE+LLLQ++Q G +EP LA+RL Sbjct: 625 ARVSLARQIVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLN 684 Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 E +QEM G P VLLV +RP++++F+R + ++ V++ E+ DN+ I + ATI Sbjct: 685 KSLVETAKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744 Query: 690 GG 691 G Sbjct: 745 GA 746 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 302/686 (44%), Positives = 435/686 (63%), Gaps = 11/686 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + ++ IL +M++PLP F LD+L +I+LS+++L+ +MF LEF+ F Sbjct: 15 RFAKQGDILLAGGVVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIF 74 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTLLRLALNVASTR+IL+ G G AAG+V+ AFG F+VGG++ IG V+F+IL Sbjct: 75 PSLLLVTTLLRLALNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILF 134 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+N VIT G RIAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR + +EADF Sbjct: 135 ILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADF 194 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV GD AG+ I +INI+GGLLVG++Q M A +YTLLT+GDGLV+ Sbjct: 195 YGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVST 254 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IP++++STAAG+IV+R +++ +GE+ + QL N M L + VL L LVPG+P + FL Sbjct: 255 IPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFL 314 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND------VQLEDSLGMEVG 368 +F+A L A + R+ + + + + D+L +EVG Sbjct: 315 IFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVG 374 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y LIP+VD +Q+G LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ Sbjct: 375 YGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVA 434 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 S + LA++PGTA + G T +PAF L A+WI + KE+A + GYTVV+ STV+ Sbjct: 435 SAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVI 494 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATHL + +H +E GRQE Q LLD +++ PK E+LVPGV++L + KVLQNL+ E Sbjct: 495 ATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVREN 554 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 V +RD+ +++ETLA++ P +P LT VR L R+I + + + +I LD +ER Sbjct: 555 VSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVER 614 Query: 609 LLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 L +++ G L P A RL+ + PV+L RP L++ L Sbjct: 615 TLQDSIRQTEGGAYLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLM 674 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689 R LP + VLS E+ + ++ + Sbjct: 675 RFLPNIPVLSQAEIPPDIRLQAVGNV 700 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 779 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 319/683 (46%), Positives = 437/683 (63%), Gaps = 11/683 (1%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 LP L I+LIL +M++PLP F+LD+L NI +S+ +LL A + R L Sbjct: 13 LPGGLARRFNTEALLASSIVLILFVMLVPLPPFLLDVLLATNITISLAILLTAFYAARPL 72 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 EFA FP +LL TTL RL+LNVASTR+IL EG AG ++ AFG F+V GN+ +G ++ Sbjct: 73 EFAIFPGLLLLTTLFRLSLNVASTRLILSEGK-----AGALISAFGQFVVAGNYVVGAII 127 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F++LV+INF+VITKG+GRIAEV ARF LD +PGKQMAIDADLNAGLI EDEA+KRR E+ Sbjct: 128 FIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIA 187 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +EADFYG+MDGASKFVRGDAIAG++I +NI+GG L+GV QHGMS AA+++ LL+IGD Sbjct: 188 READFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGD 247 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 GLV+QIPAL+ISTAAG+IV+R S + ++ E+ QLF +L++ + L LLGLVPG+P Sbjct: 248 GLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLP 307 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369 + F L L L + R E++ A+P + E ++ + D L +E+GY Sbjct: 308 LVPFWLLAGTTLLLGYQRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLELEIGY 367 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 LIP+VD Q G+LL RI+ +R++ A E+G + P V IRDNM L RY I ++G + Sbjct: 368 GLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGNPVAE 427 Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489 G+ PG +LA+ P T PG T DP FGL A+W+ A+ G TVVEA V+ Sbjct: 428 GEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAPAVIT 487 Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549 THL ++ ++A L RQE ++LLD+V + P L E+L P ++++ + KVL+ LL E++ Sbjct: 488 THLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLLRERI 547 Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609 PIRD+ +ILE LA+HA + LT VR AL IT+Q+ ++ LD LER Sbjct: 548 PIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPILERH 607 Query: 610 LLQALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 LLQ + G GLEP ++R L + + R G PPVLL + LRP+L FL Sbjct: 608 LLQQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPVLYNFLA 667 Query: 664 RSLPQLVVLSNLELSDNRHIRMT 686 S+P L VLS +L + + + Sbjct: 668 PSIPDLNVLSYNDLLPDTRVEVV 690 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 408/700 (58%), Positives = 525/700 (75%), Gaps = 9/700 (1%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+N+ ++ + + ++Q L+GP+LIL+ILSMMVLPL FILDL FTFNIALSI+VLL Sbjct: 1 MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG Sbjct: 61 MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE + Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+ AA+ Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS VLG Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357 +LGLVPGMPN++FL+FT L ++W I +K +N + +A+WNDV Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360 Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 QLE S+ +E+G LIPM+ + LL +IR++RKK A+ +GFLPP+VHIRDN +L Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420 Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474 Y IL+KG+EI G G++LAIN G A+G LP E T DP F + WI S L QA Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + +GY + E STV++THLNH+I H + LFGRQEAQQLLD V++ PKL EDL+P + L Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAITQQWFPG 593 T H+VLQNLL E VPIRDM+TILETL HAP Q+D LT++VR++LG+ I Q F Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIF-Q 599 Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 +++ VI D+ LE++LL+ + LEPGL + ++ + Q+ + ++ P VLLV+H Sbjct: 600 NNKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 LR +++ L +++P++ VLSNLEL D I T IG + Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 773 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 279/679 (41%), Positives = 429/679 (63%), Gaps = 14/679 (2%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + ++ I+ MM++PLP FILD+L NI+LS+++LL+ +FT L+ + FPT+LL Sbjct: 10 MDVIVAFGVVGIVLMMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDLSIFPTVLL 69 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 TTL RL LN++STR+IL +G+ AG+V+EAFG F+VGGN+ +GI++F+I++I+ F+ Sbjct: 70 VTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFLIILIVQFV 124 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I + A+KRR E+ QEADFYGSMD Sbjct: 125 VITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEADFYGSMD 184 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GA+KFV+GDAIAG+++ INI+GG+++G + M++ AA++Y LTIGDGLV+QIPAL+ Sbjct: 185 GANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLVSQIPALL 244 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 IST+AG+IVTR STD++ G + QL + P ++++ VL +LG++PG+P F G Sbjct: 245 ISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPAFFSLGIG 304 Query: 320 LLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376 + +++ ++ + KP + + VE N + +E S+ +E+GY LI + D Sbjct: 305 AIAAGYFLGREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLINVE-SIEVEIGYGLISLAD 363 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436 G+LL RI SIR++ A +MG + + IRDN+ L P +Y I +KG +G + P Sbjct: 364 ESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGGYEIMPNM 423 Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 L ++P ++ G T++P FG+ A+WIES E A+I+GYTVV++ST++ THL +I Sbjct: 424 VLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILITHLLDII 483 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 +A EL GRQE + ++D + + ++L+P ++TL + KVL+NLL EKV I+D T Sbjct: 484 KSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKVNIKDRVT 543 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616 ILETLA+ + D LT VR+AL R+I + V L E L+ LQ Sbjct: 544 ILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEELVSNNLQR 603 Query: 617 G-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 ++P +++ QE ++ PV++V+ +R + + P L V Sbjct: 604 SVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEIVYPNLTV 663 Query: 672 LSNLELSDNRHIRMTATIG 690 LS E+ ++ I+ + Sbjct: 664 LSLNEIPNDIKIKAEGVVS 682 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 768 bits (1985), Expect = 0.0, Method: Composition-based stats. Identities = 288/690 (41%), Positives = 430/690 (62%), Gaps = 16/690 (2%) Query: 8 LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67 + N + + I I+ I+ MMV+P+P +LD+L T +I+ +++ L++++FT+ Sbjct: 1 MATNVNRRWYSNIDVLAAIFIVSIVVMMVVPIPPLMLDILLTISISAAVLTLMISVFTKD 60 Query: 68 TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127 L+F+ P+++L TL RL+LNV +TR+IL EGH AG+V++ FG F+V G+ +G Sbjct: 61 PLDFSVLPSLILILTLFRLSLNVTTTRLILGEGH-----AGEVIQQFGEFVVKGSAVVGF 115 Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187 ++F ILV++NF+VITKG+ R++EVGARF LD MPGKQM+IDADLNAG+I E +A+ RR + Sbjct: 116 IIFAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQK 175 Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247 + EADFYG+MDGASKFV+GDAIA I+I+ INI+GG + GV+ GM + A +YTLLTI Sbjct: 176 IQAEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTI 235 Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GDGLV QIPAL++STA G++VTR +++ ++GE + QLF P + ++A V +L + G Sbjct: 236 GDGLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-G 294 Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK---MAENNTVVEATWNDVQLEDSLG 364 +P L L+ L+ L + QKA E E + E N + D++ Sbjct: 295 LPLLPLLIVAIVLVALGRVMDKGSQKAVVEESAAARETALEESKKPENVLN-LLNVDNME 353 Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 +E+GY LI +VD QQ G+LL RI IR++ A E+GF+ PV+ +RDNM+LQP +Y I ++G Sbjct: 354 LELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRG 413 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 E+ G+ +LA++ G +PG T +PAFGL+A WI + +E+ ++ G TVV+A Sbjct: 414 AEVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDA 473 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 TV+ATHL +I +A E+ RQ+ + LLD ++ P +D + + L L KVL NL Sbjct: 474 PTVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEH-LDLGHLQKVLANL 532 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 L E+V IRDM TILETLA++A D LT VR +L R I Q ++ V+ L+ Sbjct: 533 LRERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEP 592 Query: 605 PLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 LE+L+L ++Q L+P + L+ + + + G PVL+ +R L Sbjct: 593 KLEQLILDSIQPSDFGSYMTLDPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRINLK 652 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 R R LPQL+VLS EL ++ + Sbjct: 653 RVTERQLPQLMVLSYNELVHGVQVQAVGMV 682 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 299/679 (44%), Positives = 430/679 (63%), Gaps = 11/679 (1%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + + ++ IL +M++P+P +LDL NI S+++LLVAM T+ LEF FP+ILL Sbjct: 21 SDILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFPSILL 80 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 +TL RL+LNVASTR+IL+ G G AAG V+++FG F+VGG++A+G+V+F I V+INF+ Sbjct: 81 LSTLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVVINFV 140 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 V+T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FYG+MD Sbjct: 141 VVTRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMD 200 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GASKFVRGDA+A ILI+ +NI+GGL++G++ G+ + A +YTLLTIG+GLVAQ+PAL+ Sbjct: 201 GASKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALI 260 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 +S AAG++VTR + D+G ++ Q+ + P + ++ +L LL ++PG+P+ F L + Sbjct: 261 VSVAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLLASV 320 Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 +A+ E+K E + + D L + VGY L+ +V+ + Sbjct: 321 TGLMAYRRTTLEKKKARELQAEEKTVP--PPAENVETYLSLDLLELNVGYGLVDLVEGKA 378 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 L RIR IR++ AQEMG + P +HIRDN+ L+P Y +L+KG + + P LA Sbjct: 379 GSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSLLA 438 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 +NPG T+ G +P FGL A WI +E+ + QG+TVV+ TV++THL +I H Sbjct: 439 MNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIRSH 498 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 AAEL GRQE Q+LLD + ++ P+L EDLVPG V+L L VL LL E+V IRD+RTILE Sbjct: 499 AAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTILE 558 Query: 560 TLAE---HAPIQSDPHELTAVVRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL-QAL 614 +++ D L VR ALGR+I + GK + V+ D E + + QA Sbjct: 559 AVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQAS 618 Query: 615 QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 Q G LEPGLA +LL+ + + G PVLLV+ R + RFL R L Sbjct: 619 QTPPGSPLVLEPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLERYFSSLP 678 Query: 671 VLSNLELSDNRHIRMTATI 689 VLS +E+ + I + Sbjct: 679 VLSPMEVPKDVPIVSQEVV 697 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 765 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 297/678 (43%), Positives = 451/678 (66%), Gaps = 8/678 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 Q + I + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ + L F+ FP++ Sbjct: 13 QQNDVMFSIFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSV 72 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RL+LNVA+TR IL+ G G AAG+V+ +FG F+VGGN+ +GI++F+ILV+IN Sbjct: 73 LLIVTLFRLSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLIN 132 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 FMVITKG+GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+ Sbjct: 133 FMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGA 192 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFVRGDAIAGI+I INI+GGLL+GV QH M G +A +T+LTIGDGLV+QIP+ Sbjct: 193 MDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPS 252 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IST+AG+IV+R D+ Q+ QLFS+ V+ ++ A+L LVPG+P + F+ Sbjct: 253 LIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIA 312 Query: 318 AGLLGLAWW---IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374 A + L + + +K E + + E ++ D + +E+G+ LIP+ Sbjct: 313 ALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPL 372 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 VD Q G LL RI++IR++ A EMGF+ P V IRDN+ L Y +++K V + +G +P Sbjct: 373 VDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFP 432 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 ++L +NP + G T +PAFGL A W++ +K+ A+++GYT+V+ STV+ATHL Sbjct: 433 EKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTE 492 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 +I ++A EL GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR++ Sbjct: 493 IIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNL 552 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 +T++E LA +P L VR+ L R IT+ ++V L + +E++L +L Sbjct: 553 QTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSL 612 Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 Q ++P LA ++L+ + G PP+++++ +R + RF+ + +P + Sbjct: 613 QNTDDGQEIVIDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFVEKFVPNV 672 Query: 670 VVLSNLELSDNRHIRMTA 687 ++S+ E+S++ I Sbjct: 673 NIMSHNEISESVRIESLG 690 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 270/685 (39%), Positives = 409/685 (59%), Gaps = 10/685 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + + +A + + L+L+++ +PLP ILD +++LS+++L+VA++ + L+F +FP Sbjct: 19 GLKNRDIAFAVGVTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFP 78 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 T+LL T+LRL+LNVASTR+IL EGHTG AAG V+E F F+V GNF IGIV+F ILV+ Sbjct: 79 TLLLVVTMLRLSLNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVV 138 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 INF+VITKG+ RIAEV ARF LD MPGKQMAIDADL AGLI E EAK RR + E+ F+ Sbjct: 139 INFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFF 198 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFVRGDA+AGI+I +IN++GG+L+GV+Q+ +S+ AA SYT LTIGDGLV Q+ Sbjct: 199 GAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQV 258 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PAL++S AAG+IVT+ T+ E ++ QL P + ++A +L +GL+PG P +VF Sbjct: 259 PALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFA 318 Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLI 372 + GL W+I +E++ + + ++ + A VQ D L +E+G L+ Sbjct: 319 LGGLMAGLGWYIGQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALV 378 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 P++ D L G+I+S+R FA+E GF+ P V I D L Y +L++GVE+ G+ Sbjct: 379 PLMSAA-DAALPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEV 437 Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 P + +NP + GEA DP FGL+A+WI+ +A+ QGYTVV+ +V+ THL Sbjct: 438 RPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHL 497 Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 ++ +H +L Q L++ + ++ KL + + G + VLQ LL E+V +R Sbjct: 498 TEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVR 556 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612 ++ I+E +AE S+ + VR L I + + VI L ++ + Sbjct: 557 NLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVD 616 Query: 613 ALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 +++ G + P + + + P +LV+ R + L R P Sbjct: 617 SIRMNGDDKTLIMSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSP 676 Query: 668 QLVVLSNLELSDNRHIRMTATIGGK 692 V+S+ E+ N ++R ATIG + Sbjct: 677 MTQVISHNEVHRNANLRTLATIGRE 701 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 758 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 410/662 (61%), Gaps = 12/662 (1%) Query: 37 LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96 +P+PA +LD L NI++S+++L A+F+Q L + FPTILLFTT+ R++LNV+ST++I Sbjct: 21 VPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTILLFTTVFRISLNVSSTKLI 80 Query: 97 LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156 L G+ G VV FG F+ + IG++VF+IL+II F+VI KG+ R++EV ARF Sbjct: 81 LSSGNP-----GAVVTQFGRFVGQDDVIIGVIVFIILIIIQFIVINKGSERVSEVTARFT 135 Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216 LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+MDGA+K+V+GDA+AG++I Sbjct: 136 LDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGATKYVKGDAVAGLIIT 195 Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD 276 V+N++GG ++G+++ G+ G A Y +LTIGDGLV+QIP+L+IS A G++VT+VS + D Sbjct: 196 VVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISLATGIVVTKVSKEAD 255 Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336 +G+ ++ QLFS P V+ + L LG+V +P +VF + A + I R + A Sbjct: 256 IGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIFCGRVIDKRVKIASI 315 Query: 337 EPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394 E + ++ + N V L D + +E GY +IP+ D Q G+LL R+ IR++ Sbjct: 316 EEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVNQGGDLLDRVVLIRRQI 375 Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454 A E+G + P + +RDN+ L P +Y I +KG+ + G+ ++A+NPG + G T Sbjct: 376 ALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYMAMNPGYVEEEITGIPT 435 Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514 +P+F L A+WI + +E+A+ GYTVV+ +++ATHL +I H EL RQ+ Q L+ Sbjct: 436 FEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRGHLDELLTRQDVQNLIT 495 Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574 + + L +LVP ++ + + KVLQNLL E + IRD+ TI ETLA++AP D L Sbjct: 496 NITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIFETLADYAPTTRDTDVL 555 Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLL 629 T VR +L RAI+ ++F + V+ LD +E+ ++ +++ ++P ++ Sbjct: 556 TEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTEQGAFLAIDPEKTQSIM 615 Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++ + + E LG P+++ + +R + + L+V+S E+ N ++ + Sbjct: 616 KSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLIVISYNEIESNVELQSVGMV 675 Query: 690 GG 691 Sbjct: 676 TA 677 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 288/663 (43%), Positives = 440/663 (66%), Gaps = 10/663 (1%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 M+LP+P F LDLL T +I S+++L+ ++ LE A+FP++LL TL RLALN+A+TR Sbjct: 31 MILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIASFPSLLLLATLFRLALNIATTR 90 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 IL+ GH G AAGK++E+FG F+VGGN+ +GI++FVILV INF+V+TKG RI+EVGAR Sbjct: 91 RILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVILVTINFIVVTKGTERISEVGAR 150 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD MPGKQMAIDADLNAGLI E EA++RR + +EADFYG+MDGASKF+RGDAIAGI+ Sbjct: 151 FTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEADFYGAMDGASKFIRGDAIAGII 210 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274 I INI+GG+ +GVLQHGM + AA ++TLLT+GDGLV+QIP+L+ STAAG++VTR ++ Sbjct: 211 ITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLVSQIPSLITSTAAGLMVTRAVSE 270 Query: 275 QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA 334 ++G+++ +QL S P + ++A L ++G VPGMP + F + AG++ L ++ E K Sbjct: 271 TNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIPFTIL-AGMIALTAYMMQLEMKR 329 Query: 335 PAEPKPVKMAE---NNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIR 391 K + + V E+ + +++ E+GY LIP+VD ++ GELL RI+S+R Sbjct: 330 ETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYGLIPLVDEEKGGELLKRIKSLR 389 Query: 392 KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG 451 K+ ++E+G + P++HI+DN++L+ YRIL+KGVE+ PG+ LAI+ G G L G Sbjct: 390 KQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARYQIEPGKMLAIDTGQTNGKLEG 449 Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511 T +P FGL A WI+ + K++A++ G+TVV+ TV+ THL+ +I Q+A E+ GR E ++ Sbjct: 450 VETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIITHLSEIIKQNAHEILGRSETKE 509 Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571 L+D++ Q+ P + +++VP V LH+VLQNLL E +PI+D+ TI+E+L+++ D Sbjct: 510 LVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIPIKDLLTIIESLSDNITKTEDT 568 Query: 572 HELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG----LEPGLADR 627 LT +VR +L R IT + ++ + LD E L ++ G ++P Sbjct: 569 DILTELVRESLARLITSIYA-KDGVLYALTLDPASEEKLYAKIKEYNGNLPPIDPAKLQS 627 Query: 628 LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 + Q + + + + PVLL + +R + + + + + VLS E+ +++ Sbjct: 628 FIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYMSNVAVLSYNEVDPKTKLKIID 687 Query: 688 TIG 690 + Sbjct: 688 KVS 690 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 256/681 (37%), Positives = 422/681 (61%), Gaps = 12/681 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L I +L + ++ +P+++LD+L NI ++++VL ++F + L+ A+FPT+ Sbjct: 4 KKNDLFIGIYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTM 63 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LLFTT+ R++LNV+ST++IL G+ AGKVV+ FG F+ GN IGI++F+IL+II Sbjct: 64 LLFTTIFRISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQ 118 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VI KG+ R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE F+GS Sbjct: 119 FIVINKGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGS 178 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA+K+V+GDA AG++I IN++GG+++G+ G+++ A YT+LTIGDGL +QIP+ Sbjct: 179 MDGATKYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPS 238 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IS A GV+VT+ S++ ++G++++ QLFS V+L+ A L LLG+ +P +F+ Sbjct: 239 LLISLATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLG 298 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMV 375 L+ + + + E + + + N V L D + +E GY +IP+ Sbjct: 299 MALIIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLA 358 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL R+ IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ Sbjct: 359 DVNQGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFD 418 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 ++A+NPG + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL + Sbjct: 419 HYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEV 478 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I QH AEL RQ+ Q L++ + L E+LVP ++ + + KVLQNLL+E + IRD+ Sbjct: 479 IRQHIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLV 538 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 TI ETLA+HA + DP LT VR AL RAI+ ++F + +V+ +D +E+ ++ +++ Sbjct: 539 TIFETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVK 598 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 L+P + +++ L + E +G P+++ + +R + ++ Sbjct: 599 NTEQGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDII 658 Query: 671 VLSNLELSDNRHIRMTATIGG 691 V+S E+ N ++ + Sbjct: 659 VISYNEVESNVELQSVGMVTA 679 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 289/677 (42%), Positives = 425/677 (62%), Gaps = 15/677 (2%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + ++ I+ ++++P+P I+D L NI LSI++LL M+ + L+F+ FP+I Sbjct: 2 KASELTVALFVVGIVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSI 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TTLLRLALN++STR+IL + AG V++AFG F++GGN +G ++F+I+ I+ Sbjct: 62 LLITTLLRLALNISSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VIT+GA R++EV ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+ Sbjct: 117 FIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIA I+I++INIV GL++G++ GM + A +Y +LT+GDGLV+QIPA Sbjct: 177 MDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPA 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+ISTA G+IVTR +++ ++G ++ QLF+ P ++ ++A +L L LVP +P L +L Sbjct: 237 LLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIG 296 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377 + L + + E + N ++ D + +E GY LIP+ Sbjct: 297 SLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKKVYELLQVDPIELEFGYELIPLAS- 355 Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437 GELL RI IR++ A ++G + P++ +RDN+ L+P Y I ++G EI G Y R+ Sbjct: 356 ---GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRY 412 Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 +A+ G + G +PAFGL AIW++ + +A+ +GYTVV+ +V+ATHL H+I Sbjct: 413 MAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIK 472 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 QHA EL GRQE Q L+D V P L E+LVP ++T+ + KVL NLL E + IRD+ TI Sbjct: 473 QHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTI 532 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 LETLA++API D LT VR AL R I+ ++ P ++ VI LD +E+L+ ++ Sbjct: 533 LETLADYAPIIRDTDVLTEYVRQALARTISNKYAPY-GKIEVITLDPSVEQLISSSITQT 591 Query: 618 G-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 LEP A R+L E + + G PV+L R L + + + P + VL Sbjct: 592 EHGSYLALEPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVL 651 Query: 673 SNLELSDNRHIRMTATI 689 S EL N + T+ Sbjct: 652 SYNELLPNIEVASVETV 668 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 298/681 (43%), Positives = 449/681 (65%), Gaps = 7/681 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + I +L +L +M++PLP +++D++ NI + +++LL A++ + LEF+ F Sbjct: 11 RIGKQPDILLAISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVF 70 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RL+LNVA+TR+IL+ G G AAAG V+E FG F+VGGN +G+++F+ILV Sbjct: 71 PSLLLLTTLFRLSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILV 130 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 +INF+VI+KG+ RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR V +EA+F Sbjct: 131 LINFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEF 190 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGASKFVRGDA+AG++I VIN+VGGL++GV+QHGMS+ A ++LLT+GDGLV+Q Sbjct: 191 YGAMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQ 250 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IPALVISTAAG+I+TR S+++ + ++ Q ++P V ++A L L+ LVPG+P + FL Sbjct: 251 IPALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFL 310 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-NNTVVEATWNDVQLEDSLGMEVGYRLIP 373 + + GL ++++ +Q+ E + + E +D+ +ED + +E+GY LI Sbjct: 311 ILSLGLGASGYYLQLGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLID 370 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 MV+ ++G LL R++ +R++ QE+GF+ P VHI+DN+ L + Y+IL++G +G G+ Sbjct: 371 MVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIR 430 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 P LA+ + + G AT +PAFGL A+WI ++QA++ GYTVVE +TV+ THL Sbjct: 431 PRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLT 490 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 L+ AAE+ R + LL++ AQ PK+ E++VP V + L VLQ LL E VPIRD Sbjct: 491 ELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRD 550 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ- 612 + ILE L++HA +L VR LGR ITQ++ + E+ V LD LE+ + + Sbjct: 551 LMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSER 610 Query: 613 -ALQGGGGLEPGLA--DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 + Q G L + R +++ E S ++ PVLL LR L+R LR+ + ++ Sbjct: 611 MSQQQGWALPLDMPEWQRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTRALRKVMTRI 668 Query: 670 VVLSNLELSDNRHIRMTATIG 690 VLS E+ +I+ A + Sbjct: 669 AVLSIAEIPPQTNIQSLAKVS 689 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 251/663 (37%), Positives = 397/663 (59%), Gaps = 16/663 (2%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP +LD+ N+ ++I +LL+ +FT+ LEF+ FPT+LL TT+ +L LN++STR IL Sbjct: 33 PLPTSLLDIFIVTNLTVAINILLITLFTKSVLEFSTFPTVLLITTMFKLGLNMSSTRSIL 92 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 G+ G V+EAF + G N+ +GI++FVI++I+ +V+T G+GR++EV ARF L Sbjct: 93 TTGN-----GGHVIEAFADVVAGENYIVGIILFVIIMIVQLVVVTNGSGRVSEVSARFTL 147 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQMAID+DLN+G I E++A++RR ++ +EADFYGSMDGASKFV+GDAIAGI+I++ Sbjct: 148 DAMPGKQMAIDSDLNSGAITEEQARQRRKDLQREADFYGSMDGASKFVKGDAIAGIIIVL 207 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277 +N++GG ++ + +S+ A + L IGDGLV+ +P+L+IS A GVIVTR + Sbjct: 208 VNLIGGTIIFTAKGDLSITDALSQFGKLAIGDGLVSSVPSLLISLATGVIVTRSEDNSTF 267 Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337 G + + NP + + +L +L LVPG P + F++ + + ++ +E++ E Sbjct: 268 GTDIASDALRNPQLFKVVGVILLVLALVPGFPKIPFIVLSLAMFAANVLVKQKEEQRIKE 327 Query: 338 PKPVKMA---ENNTVVEATWNDVQ--LEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392 + + + +DV + L +E+GY LIP+VD D L+ RI +IR+ Sbjct: 328 RIKEEQTLALQRKKEEQEEDDDVASFQVEPLSIEIGYGLIPLVDSTIDNSLMNRISAIRR 387 Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN-PGTAAGTLPG 451 + A E+G L V IRDN+ L Y I ++G E+G GD YP +++ I+ + G Sbjct: 388 QTAHELGILVSPVRIRDNLYLNANDYSIKIRGNEVGHGDIYPDKYMIISQSDDGSFPFQG 447 Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511 T +PAF L+A+WI+ KE A +QG+TV+E TV+ATHL +I HA EL GRQE Q+ Sbjct: 448 IPTKEPAFQLDALWIDEKDKENADLQGFTVIEPLTVIATHLKEIIHAHAPELLGRQEVQK 507 Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571 LL+ + + ++L+P ++ L + KVLQNLL+E VPI D+ TILETLA++ + D Sbjct: 508 LLEGIKANNNVVIDELIPDIMRLGEVEKVLQNLLEENVPINDLSTILETLADYGTVTKDT 567 Query: 572 HELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLAD 626 LT VR L R I ++ D ++V+ + +E ++ Q++Q ++P + Sbjct: 568 EVLTEYVRQGLRRTIANKYADENDRINVVTIHPKVEEMVSQSIQKTATGSYPVMKPDSVN 627 Query: 627 RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 686 ++L + + V+L + +R + + + P + VLS E+ + I Sbjct: 628 KILTAIGDISQQMAAQNMNYVILTSPKIRLAFRKLIAFNFPDVAVLSLNEIPNEIAIESI 687 Query: 687 ATI 689 I Sbjct: 688 GNI 690 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 300/698 (42%), Positives = 441/698 (63%), Gaps = 16/698 (2%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 + L + L P++IL IL+M++LPLP +LD+LFTFNI L++MVLLVA+ + Sbjct: 2 AKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAK 61 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 R LEF+ FPTILL TTL+RL LNVASTR++L+ GH GA AAGKV+E+FG ++GGNF +G Sbjct: 62 RPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVG 121 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 VVF+IL+IINF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR Sbjct: 122 FVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRK 181 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 +V EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+T Sbjct: 182 DVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMT 241 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306 IGDGLVAQIP+L++STAA +IVTRVS + D+ + +QL ++PSV+ + ++ +L +VP Sbjct: 242 IGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVP 301 Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK----MAENNTVVEATWNDVQLEDS 362 GMP+L FLLF+A L W + R Q A AE K ++ + + +W + L + Sbjct: 302 GMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 361 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + + +GY+L+ +VD Q L RIR +R+ + G L P + IR+N L+P++Y I + Sbjct: 362 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 421 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 G++ D + +A+ G + G DPA+G+ WI+ A K +A GY V+ Sbjct: 422 NGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVI 481 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 ++++V+ATH+N ++ + +LF + QL +R++ P+L EDL + + L KV + Sbjct: 482 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYR 540 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E V +RD+ TI L + + D L A VR+AL R+IT + K E+ V L Sbjct: 541 ALLTEGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 599 Query: 603 DTPLERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 + LE LL QA Q G + +P + ++ + + + + G PVLLV Sbjct: 600 NNELENLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPP 659 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 LRPLL+R+ R P L VLS E+ D +++ + Sbjct: 660 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALS 697 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 289/688 (42%), Positives = 451/688 (65%), Gaps = 17/688 (2%) Query: 12 ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 A K +A I ++ I ++++P+P FI+DLL T NI+L +++LLV++ + L+ Sbjct: 13 AFFKYLFKGDMALIIGVISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALDL 72 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 ++FP+ILLF TL RLALNVASTR IL++G+ GKV+ AFG F+VGGN +G+VVF+ Sbjct: 73 SSFPSILLFMTLFRLALNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVFL 127 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 I+V+I F+VITKGA RI EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++E Sbjct: 128 IIVVIQFIVITKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSRE 187 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 A+FYG+MDGA KFV GDA+AGI+I++INI+GG+++G+ + GMS+ A + YTLLT+GDGL Sbjct: 188 AEFYGAMDGAGKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDGL 246 Query: 252 VAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310 V+QIP+ +I+TA+ VIVT+ S T +++G + QLFS P+ + + +L L +VPG+P Sbjct: 247 VSQIPSFIIATASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPK 306 Query: 311 LVFLLFTAGLLGLAWWIRGREQK----APAEPKPVKMAENNTVVEATWNDVQLEDSLGME 366 + FL+ AG + +++ R K A A K + E + + D + +E Sbjct: 307 IPFLVL-AGFFWMMFFVLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELE 365 Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426 VGY+L+P+VD ++G +L RI ++R + A++MG + P + +RDN+ L+ +Y + ++G E Sbjct: 366 VGYKLVPLVDPNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQE 425 Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486 I G+ G +LAI+ G + G T+DPA+GL A+WI A+KE A+ GYTVV+ ++ Sbjct: 426 IAHGELLTGSYLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPAS 485 Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546 V+ THL +I HA E+ R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL Sbjct: 486 VMITHLTEIIKTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLK 545 Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606 E+VPIRD+ +ILET+A++AP D +LT VR L R I +++ + ++ VI D L Sbjct: 546 EQVPIRDLSSILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHL 605 Query: 607 ERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661 E+ + A+ L+P +A +++ + E + G VLL + ++R + R Sbjct: 606 EQTIANAIHKTEKGNLLALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRL 665 Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +LPQL VLS E+S I + Sbjct: 666 IENALPQLAVLSYKEISPGVMIDSVGVV 693 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 278/683 (40%), Positives = 429/683 (62%), Gaps = 9/683 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + +Q + L P+ I+ + ++++P+P+ ++DLL NI +S++VLL ++ + LEF F Sbjct: 3 RLSQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIF 62 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 PT+LL TTL RL LNVASTR+IL T G AAG V+ AFG F+ G +GI+VFVI+ Sbjct: 63 PTMLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVII 122 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 V+I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+AD Sbjct: 123 VVIQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQAD 182 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 F+G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M + +AE +T L+IGDGLV+ Sbjct: 183 FFGAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVS 242 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 Q+PA + S AAG++ TR S Q++ + QLFSNP ++++ + +L ++ +P + Sbjct: 243 QVPAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPL 301 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT--VVEATWNDVQLEDSLGMEVGYRL 371 L AG GLA + +++ A+ A E D D + +E+G L Sbjct: 302 LAIGAGCGGLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 I + + +Q G+LL RI ++R+ A ++G + P V ++D L +YRI + G + +G+ Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 PG++LAI+ G G +PG T DPAF A+WI+S L+E+AQ+ GYT VE + V+ATH Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L ++ +HA EL R + LLD + + P + ++LVP + ++ + +VLQ LL E+V I Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R++ TILETL + A DP LT VR L R I+ ++ ++ +HV+ LD LE + Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 ++ L+P + +R+ + L++ G P++LV+ +R L +L Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661 Query: 667 PQLVVLSNLELSDNRHIRMTATI 689 P+L VLS E++ + + + + Sbjct: 662 PRLHVLSFNEVTRDTKVDILGVV 684 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 289/682 (42%), Positives = 438/682 (64%), Gaps = 14/682 (2%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 +++ + L P ++ I+ MMV+PLP +LD+L NI +++VLLV+MF +R L+FAA Sbjct: 29 VRAKRLGELGIPAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRPLDFAA 88 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FP++LL TL RLALN++ TR++L+ G+ AGKVV++FGHF+VGG+ +G+V+F+I+ Sbjct: 89 FPSLLLIATLFRLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLVIFLII 143 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 +II F+VIT GAGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+ EAD Sbjct: 144 LIIQFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEAD 203 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 FYG+MDGASKFV+GDAIA ++I +N++GGL +G+LQ +S+G A +Y+LL++GDGLV+ Sbjct: 204 FYGAMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVS 263 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 QIPAL++S + G+IVTR +++ D+G ++ Q+ S + + A + ++ L+PG+P L F Sbjct: 264 QIPALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPF 323 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373 L+ L L ++ + A +P A EA ++++E L + + + L+ Sbjct: 324 LILGGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEMRVE-PLELNLAFDLVD 382 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 +VD + GELL R+R++R+K A E+G + P+V RDN+DL P Y I + GVE+ G+A Sbjct: 383 LVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEAP 442 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 PG LAI G LPG AT++P FGL W+ L++QA++ G TVV+ ++V+ THL Sbjct: 443 PGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHLA 500 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 ++ +AA+L R++ + L + + P + E+L P ++ L + +VLQ LLDE VPIRD Sbjct: 501 EVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIRD 560 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 + I E L++ A + DP L R LG AI+ + + V+ +D E+ L+ Sbjct: 561 LPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYA-QDGRLSVLTIDPLTEQRLVDK 619 Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 L+ G L+P A+ L+ + + R E LG PVL LRP L R +R + P+ Sbjct: 620 LRHGEHGSFLALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVRSANPR 679 Query: 669 LVVLSNLELSDNRHIRMTATIG 690 L VL+ EL + + T+ Sbjct: 680 LPVLAYGELGPHLQLETVGTVS 701 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 284/679 (41%), Positives = 431/679 (63%), Gaps = 12/679 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L+ I ++LI++M+V+P P ++L +L NI+L+++VLL M Q L+F+ FP++ Sbjct: 2 STRDLSVLISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSL 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RL LNV++TR IL G GKVVE FG+F+VGGN +G+VVF+IL+II Sbjct: 62 LLLLTLFRLGLNVSTTRSILSHGE-----GGKVVETFGNFVVGGNVLVGLVVFIILIIIQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGA R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+ Sbjct: 117 FIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIAGI+I++INI+ G+++G+LQ GMS+ AA +T+LT+GDG+V+QIPA Sbjct: 177 MDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPA 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+ISTA G++VTR +++ ++G + QLF+ P ++ ++AA + LLG+ + L+ Sbjct: 237 LLISTATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLA 296 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMV 375 L A+ + ++ + ++ +++ + VQL D + E GY LIP+ Sbjct: 297 GLLAFGAYTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLA 356 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL RI IR++ A E+G + PVV IRDN+ LQP YR+ +KG E+ G+ Sbjct: 357 DANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLD 416 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 +LA++P + G TV+P+FGL A WI A+K++A + GYTVV+ ++VV+TH+ Sbjct: 417 HYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEK 476 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I QHA EL GRQE +QL+D + + P L E++ P +++ + KVL LL EKV IR++ Sbjct: 477 IKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 536 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 TI ETLA++ + +D LT R AL + IT Q+ + + V+ +E+ + +Q Sbjct: 537 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQ 596 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 LEP +++ ++ + + + +LL + +R + + L R P L Sbjct: 597 QTEHGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLP 656 Query: 671 VLSNLELSDNRHIRMTATI 689 VLS EL N ++ + Sbjct: 657 VLSYNELEANVEVQSIGVV 675 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 287/667 (43%), Positives = 445/667 (66%), Gaps = 4/667 (0%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 + ++LILS +++P+PA +LDLL T +I S+ VLL+ F + LEF++FP++LL TLLR Sbjct: 10 LAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVLLLGTLLR 69 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L+LN+A+ R IL+ GH G AAGKV+EAFG + GG+ +G++VF+I ++INF+VITKGA Sbjct: 70 LSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVINFIVITKGA 129 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY +MDGASKF+ Sbjct: 130 ERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAMDGASKFI 189 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 RGDAIA ++I+ +++VGGLL+G+ GM + A ++YT+L+IG+GL +Q+PAL++STAAG Sbjct: 190 RGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPALLLSTAAG 249 Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 V+ T++S+ +++GE + +L P +L SA VLG +GL+PG+P L FL +A L G + Sbjct: 250 VLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSAILAGAYY 309 Query: 326 WIRGREQKAP-AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384 ++ ++ E + + + E + + + +E+GY LIP+VD Q G++ Sbjct: 310 LVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVDESQGGQIP 369 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 +I+++RK+ A+E G + P++HIRDN+ L+P YRIL+KG+EI + PG +LA+N G Sbjct: 370 KKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHYLAVNLGN 429 Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504 A G + G T DPAF + A WI KE+AQ GY VV+A TV+ THL+ +I ++ EL Sbjct: 430 AKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIKRNLHELL 489 Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564 R E +L++ ++++ PK+ +++VP V ++ +H+VLQNLL E +P+ D+ TILETLA++ Sbjct: 490 TRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTILETLADY 549 Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEP-- 622 DP LT VR AL + IT+ + ++ I L +E L++ L+ E Sbjct: 550 IEQTKDPDLLTEYVRQALSKRITRMYLT-NGTLYAIALSPKVEAKLVKFLKENREDEFID 608 Query: 623 GLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682 + + LL + + + + GA PVLL + +R + + + L +L VLS EL + Sbjct: 609 YVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSYNELEKQVN 668 Query: 683 IRMTATI 689 I++ + Sbjct: 669 IKIIGIV 675 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 283/702 (40%), Positives = 436/702 (62%), Gaps = 28/702 (3%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N + + ILI+ I+ +MV+P+P F+LD L NI +SI++LL ++ +R L+ + Sbjct: 2 NFTRIKGLDVIISILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDIS 61 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FP++LL T+ RLALNV+STR+IL+ G GKV+ AFG F+VGGN+ +GI++F+I Sbjct: 62 IFPSLLLVMTIFRLALNVSSTRLILLNGK---NFEGKVIRAFGDFVVGGNYIVGIIIFLI 118 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 LVII F+VITKG RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EA Sbjct: 119 LVIIQFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREA 178 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYG+MDGASKFVRGDAIAG++I +IN+VGGL++G+LQ G+++ AAE + LLT+GDGLV Sbjct: 179 DFYGAMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLV 238 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 AQIPAL+IST+AG+IV+R ++ + G ++ QL S+ V+ ++ ++ +LGL+ +P Sbjct: 239 AQIPALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFP 298 Query: 313 FLLFTAGLLGLAWWIRGREQK--------------APAEPKPVKM-----AENNTVVEAT 353 L+ AGLL +A+ R E + A PK K Sbjct: 299 SLILGAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEE 358 Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 ++V D++ +++GY LIP+ D Q G+LL RI +RK+ A E+G + + IRD++ L Sbjct: 359 VSEVLQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLL 418 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 Y I ++GVE+G + P R LAIN G A LPG T +PAFGL A WI+ +LKE+ Sbjct: 419 SSNEYVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEE 478 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 A +GYT V+A +V ATHL+ I ++A E+ G +E + L+D + L + L+P ++ Sbjct: 479 AIEKGYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLK 538 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFP 592 + L KVL LL E+V IR++ I E+L E A ++ L VR +LGR I + Sbjct: 539 MHELKKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKS 598 Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV 647 E+HV LD +E+ L ++++ LEP ++ L+ + ++L M G P+ Sbjct: 599 DDGELHVSALDPTIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPI 658 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 L+ + +R +RF + + + +++ E+ + + + + Sbjct: 659 LICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 299/692 (43%), Positives = 424/692 (61%), Gaps = 13/692 (1%) Query: 5 AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64 +A L +PAN + +A ++++L ++++V+PLP +LDL +I LS++VLLV++ Sbjct: 3 SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62 Query: 65 TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124 T L+F++FP +LL TL R+ L+V+STR+IL E H AGKV+EAFG F++GGN+A Sbjct: 63 TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117 Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184 +GIV+F+IL INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177 Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244 R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+ Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237 Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 LT+GDGLV Q+PAL+ISTAAG++VT + + +G + QL ++P M ++A VLG L Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK--PVKMAENNTVVEATWNDVQLEDS 362 +PG+P FL AG LA E + E D+ D Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQIDP 357 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + +EVGY LIP++D Q G+LL RI +RK+ A E+G L P + IRD++ L Y I + Sbjct: 358 IELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKL 417 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 +G E+ + P +A+N G+ + G TVDP+FG+ A W+ SA + +A+ GY VV Sbjct: 418 RGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVV 477 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 E +TVVATHL + A+EL GRQE Q++++ + + P L E+++PG V+L+ LH+VLQ Sbjct: 478 EPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQ 537 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E+VPIRD+ TILE L + A DP LT V R AL I + + V I + Sbjct: 538 RLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITI 597 Query: 603 DTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 LE L + L P +L + + G P L+ +LR Sbjct: 598 GGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLRV 657 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688 + R + LP L V+S EL + T Sbjct: 658 GVRRLIEPVLPSLPVISLAELPAQITLSSVTT 689 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 728 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 282/634 (44%), Positives = 404/634 (63%), Gaps = 9/634 (1%) Query: 57 MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116 ++LLV +FT L+F+ FPT+LL TL RLAL VA+TR+IL G A+AG V+ AFG Sbjct: 54 VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108 Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176 F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168 Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236 E EA++RR + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++ GM + Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228 Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296 A +YTLLTIG+GLV QIPAL++ST+AGV+VTR + G + QL + P ++ ++A Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI-RGREQKAPAEPKPVKMAENNTVVEATWN 355 A+ LLGLVPG+P+L+ L L +++ R+++ A P E T E Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348 Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 Q+E L +E+GY L+P+ +Q G+LL R+ ++R++ A E+G + IRDN+ L P Sbjct: 349 YFQVE-PLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPP 407 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 Y ++G+E G+ PG +LA++P L G AT +P FGL A WI A KE+A+ Sbjct: 408 NVYLFRLRGIEAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAE 466 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 G+TVVE S V+ATHL+ I Q+A L GRQE ++LLD + ++ P L E+LVPG++ L Sbjct: 467 AAGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLG 526 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 + KVLQ LL+E+VPI+D+ +ILE LA+ A + DP L R AL R ITQQ+ + Sbjct: 527 EVQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYA-RDN 585 Query: 596 EVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 ++ V+ L E L QA + G LEP RLL + +A+ G PV+L R Sbjct: 586 KLSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGAR 645 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LL R + PQ+ V+S E+ + T+ Sbjct: 646 LLLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 278/699 (39%), Positives = 417/699 (59%), Gaps = 32/699 (4%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + + + +++LP+P +LD F NI LS++VLL ++ + EF++FPT+ Sbjct: 2 KRADLVLTAGLFITVLLLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTL 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RLALN++STR++L++G+ AG+V++AFGHF++ GN+ +G VVF+ILV+IN Sbjct: 62 LLALTLFRLALNISSTRLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVIN 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGAGRIAEV ARF LD +PGKQMAIDA+LNAG+I E +A RR +V +EADFYG+ Sbjct: 117 FVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFVRGDAIAGI+I ++N++GG +GVLQ G+S+G + + +TLL+IGDGLV+QIP+ Sbjct: 177 MDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPS 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 LV+S AAGV+VTR S + ++G Q+ Q+F P M ++A +L G++PGMP L F Sbjct: 237 LVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPFAGLA 296 Query: 318 AGLLGLAWWIRGREQKAP----------------------AEPKPVKMAENNTVVEATWN 355 A L ++ +E K A A + Sbjct: 297 AFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVR 356 Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 + D +E+GY L+ + + + G+LL R+ +RK A+E G + P V +RDN++L+P Sbjct: 357 KLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEP 416 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 YR L++G + G +P RWLA+N + L G T +P F L A WI+ K+ A+ Sbjct: 417 NDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAE 476 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 I GYTVV+ ++V+ THL+ + +A L GRQE Q L+D + Q P L +L+P +VTL Sbjct: 477 INGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLG 536 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 + +VLQNLL E + I ++ ILE + + A + +P +L+ ++R LG ++ Sbjct: 537 IIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPG 596 Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650 V + +D E+ L +Q L+P +L + ++ G P VL+V Sbjct: 597 VVRAVTVDPRFEQWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVV 656 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +R L RF S P+L VL+ EL I + Sbjct: 657 SSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 237/683 (34%), Positives = 391/683 (57%), Gaps = 41/683 (6%) Query: 43 ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102 ++D+ N+A+S+M+L++ M + LE + FP++LL TTL RL +NV++TR IL G Sbjct: 29 MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNILTNG-- 86 Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162 ++G +++AFG F+V GN +G+++++I+V++ F+VITKGA R++EV ARF LD MPG Sbjct: 87 --GSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144 Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222 KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD + ++ IN+VG Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204 Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282 G ++G++Q G + +Y++ T+GDGLV QIP+L+IS + G+IVTR ++ + E + Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP-- 340 Q P M+++ +G+L L+PGMP L L G + +++ R ++ P + Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324 Query: 341 --------------VKMAENNTVVEATWND----------VQLEDSLGMEVGYRLIPMVD 376 E + + D + + + M+ GY LIP+ D Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLAD 384 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 G L+ RI R+++AQ++GF+ P + +RD+ L Y I +KG EI G+ Sbjct: 385 ESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTD 444 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 LA+ P + G T++PA+G+ + WI +E+A++ GYTV++ +V+ +HL+ Sbjct: 445 YVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSET 504 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I +HA EL RQE +L++ + + P+L E+ PGV++ L KVL LL E V I+D+ Sbjct: 505 IKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDLE 564 Query: 556 TILETLAEHAPIQ----SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 TI+ET+ E D ++ VR +L R IT+ + + VI LD LER ++ Sbjct: 565 TIVETMFECISETGLPVKDTDQIVEKVRASLKRTITRMYC-EDGNMKVITLDAGLERTMV 623 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 +L G L P L L+ Q E + L +PP++L + +R + + Sbjct: 624 NSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFY 683 Query: 667 PQLVVLSNLELSDNRHIRMTATI 689 P + VLS E++ N I+ ++ Sbjct: 684 PNVRVLSFNEVASNVQIQAIGSL 706 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 302/676 (44%), Positives = 436/676 (64%), Gaps = 18/676 (2%) Query: 27 LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86 I+ IL MMV+PLP+++LDL +IALS+ VLL + + +R LEFA FP +LL TTL RL Sbjct: 4 AIVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTLFRL 63 Query: 87 ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146 +LNVASTR+IL G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITKG Sbjct: 64 SLNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITKGTE 118 Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206 RI+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+KFVR Sbjct: 119 RISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATKFVR 178 Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266 G+A+AGILI IN+VGGL++GV Q M +G AA ++ LL+IGDGLV+QIPAL++STAAG+ Sbjct: 179 GEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTAAGI 238 Query: 267 IVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325 IV+R S ++ + +M QL P +L++ LG++G VPG+P + F L +AG+L L W Sbjct: 239 IVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVL-LLW 297 Query: 326 WIRGREQKAP-----AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 ++R +E+KA + + + E +D+ L D L +E+GY LI +VD Q Sbjct: 298 YLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPDQG 357 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G+LL R++ +RK+ A+EMG + P V IRDN+D+ +Y I ++G IG G PG LA+ Sbjct: 358 GDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKLAL 417 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 P G DP FGL A+W+ +A+ G TV+E V++THL + ++A Sbjct: 418 LPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRKNA 477 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 L RQE +++LD+V + P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TILET Sbjct: 478 YRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTILET 537 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-- 618 LA+HA LT R AL IT+++ + + +D LE+ LL+ + GG Sbjct: 538 LADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGGLD 597 Query: 619 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 GL+P AD L+ E + P+LL++ LR + +FL + + VLS Sbjct: 598 ANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVLSY 657 Query: 675 LELSDNRHIRMTATIG 690 +L+ + + + + Sbjct: 658 NDLTPDAPVDIVDQVS 673 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 292/726 (40%), Positives = 433/726 (59%), Gaps = 40/726 (5%) Query: 2 SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 S LA P + Q + LA + ++ IL+++++PLP F+LD L T +IALS++++L+ Sbjct: 6 SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 ++ + +F+AFPT+LL TL RLALNVA+TR+IL +G+ G +A ++ AFG F V G Sbjct: 66 GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q MS+ +A + Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +T+LTIGDGLV QIPAL+I+TA G++ TR + ++D +++ QL + +++ A L Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA-----------------PAEPKPVK 342 L +PG+P L +AW I + +P K Sbjct: 306 LLFATIPGLPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSK 365 Query: 343 MAENNTVV------------EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390 + + E ++V + L + +GY+LI + D +Q G+LL RIR I Sbjct: 366 IKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGI 425 Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450 RKK A + GFL P + IRDN+ L P Y I +KG+ IG G P ++LA+N G + Sbjct: 426 RKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIE 485 Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510 G T +PAFG++A+WI++ KE+A IQGYT+++ STV+ATH + L+ ++A + + E + Sbjct: 486 GIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVK 545 Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQS 569 LL+R+A++ P + E+ + + VLQ LL EK+PI+DM TILET+ + AP +Q+ Sbjct: 546 SLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQN 603 Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624 D + LT VR L R IT + + + T E+ LL L+ G L G Sbjct: 604 DVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE 663 Query: 625 ADRLLAQTQEALSRQEMLGAPPVLL-VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 +L+ E + G PV+L V LR LS + ++ +VVLS+ EL N + Sbjct: 664 LQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNF 723 Query: 684 RMTATI 689 TI Sbjct: 724 EALGTI 729 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 340/667 (50%), Positives = 470/667 (70%), Gaps = 3/667 (0%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++ +R L+F+ FPT+LL T Sbjct: 16 VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TLLRL+LNVASTRIILM+GHTG AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI Sbjct: 76 TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A Y LLT+GDGLV QIPAL+IS Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 TAAG++V+R S++QD+ + Q+F P + ++AAVL LG++PG P++ FL A L Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNT-VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 LA W+ + A + P+ E V+ TW+D+ D L +EVGYRLIP+VD Q Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G L RI R++FA +MG + P++ +RDN+DL+P +RI +KGV++ G+ G+ LA+ Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 + G G + G VDP L +WI++A E+A+++G+ V+E + ++A + + QHA Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 EL GR E QQLLD +A+ P L ED+ P + LTT+ +LQ L+ E VPIRD RT+ ET Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618 LA AP D +L VR ALGR+I + F G D + VIGL E LL + +G Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 L P D L ++A++ E G PPVLL + LR +LSR LRR+LP+L V++ E+ Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLRAILSRLLRRTLPRLAVIAYAEVP 675 Query: 679 DNRHIRM 685 ++ +++ Sbjct: 676 ADKTVQV 682 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 287/673 (42%), Positives = 417/673 (61%), Gaps = 10/673 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P+ +L I+ ++ PLP F+LDLL +I +S+ VL+V+++ R +EF +FPT LL Sbjct: 31 LAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEFTSFPTTLLLL 90 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F++L+ I ++VI Sbjct: 91 TLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFLVLIAIQYVVI 150 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR + EA+FYG+MDGA Sbjct: 151 NHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATEAEFYGAMDGA 210 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 S+F + DA+A ILI INI+ G L+GV QHGM A E+YT+LTIGDGLV IPAL+IS Sbjct: 211 SRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGLVTVIPALMIS 270 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 + G+IVTR S++ +G + Q+ N +LL+A VL L +PGMP L FL+ G Sbjct: 271 ISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKLPFLVLGFGAG 330 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 W +R E A P + + + + + L +EVG LI +V+ Q+ Sbjct: 331 AGGWRMRKTELAQIAAPP--EDTGKPAPAKDSVESLLRVEPLAIEVGLGLIGLVEGAQES 388 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 LL RI +IR++ A ++G+L P V + DN+ L+ Y I +KGVEI + G LAI Sbjct: 389 PLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYELPQGCELAIA 448 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 G A+ L G+AT DPAFG+NA WI + ++A+ GYTVV++ +V+ THL+ +I ++A Sbjct: 449 TGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTHLSEIIRRYAH 508 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 ELF RQ+A++LLDRV E PK+ ED+VP ++ L+++ +VLQNLL E+V IRD +ILE L Sbjct: 509 ELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSIRDAVSILEAL 568 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618 E +P LT VR A+ RA+ + + ++ +D +E + A++ G Sbjct: 569 GEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVEAAVEHGEQNS 628 Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P +L + + E P V + + R L + ++P L L++ E Sbjct: 629 HIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTMPNLFFLAHNE 685 Query: 677 LSDNRHIRMTATI 689 + ++ I Sbjct: 686 VPPGVRVQSLGNI 698 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 280/698 (40%), Positives = 432/698 (61%), Gaps = 16/698 (2%) Query: 4 LAAMLRLPANLKSTQWQ------ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57 L+A ++T W+ + + ++++L+++++PLP FILD+ + +I S++ Sbjct: 37 LSAETLRSGGWRATSWRSLVPGTDVGLALGVVVLLAILIIPLPTFILDMGLSLSITSSVL 96 Query: 58 VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117 VL+VA+F +RTL+F +FPT+LL TTLLRL+L +A+TR+IL G G AAG VV AFG F Sbjct: 97 VLMVALFLERTLDFTSFPTLLLLTTLLRLSLEIATTRLILSHGSEGTYAAGHVVAAFGGF 156 Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177 L+GG+ IG +VF IL+++NFMVITKG+GRIAEV ARF LD MPGKQMAIDADL++G I Sbjct: 157 LMGGDLFIGGIVFCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAIN 216 Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237 E A+ +R E+ E+ FYG+MDGA+KFVRGDAIAG++I INIVGGL +G+L+H M + Sbjct: 217 ERTARAKRKELEDESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSE 276 Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAA 297 AA ++T LT+GDGLV+QIPAL++STAAG++VT+ +D +V QL NP + ++ Sbjct: 277 AASTFTTLTVGDGLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGG 336 Query: 298 VLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV 357 + L ++PG+P L FL+ G G+ W+R + + +++ T +++ Sbjct: 337 LSALFAIMPGLPALPFLVIAVG-AGIGAWMRHKTPVKDGDGDVTQISPQPTAP--PISEM 393 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 D L +E+G+ L+P+ ++ +L +I+++R+ A E+GF+ P V I+DN+ L Sbjct: 394 LKLDLLRLELGFGLLPLTS-GENPQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDN 452 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 Y I +K +EIGSG+ PG+ +A++P A LPG+ T +PAFGL A+WI+ +LK +A Sbjct: 453 YVIKLKEIEIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAM 512 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 T+V+ ++V+ THL+ + Q+ +L Q LLD + +E KL DL+P V L+T+ Sbjct: 513 KCTIVDPASVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTI 572 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDE 596 +VLQ+LL E+V IRD+ TILE++ E + LT VRV L R I G Sbjct: 573 QRVLQSLLAERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGY 632 Query: 597 VHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651 + +I L E + + G + P + ++ + + +E + G PV++V+ Sbjct: 633 IPMITLSAEWEAEFMAHITGQADDRRLAMPPSMLNKFVGKLREVFNTVSASGEIPVVVVS 692 Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +R + + R P + VLS E+ I+ ATI Sbjct: 693 TPVRDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATI 730 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 291/686 (42%), Positives = 425/686 (61%), Gaps = 11/686 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + L P+ I+ + ++++PLP ++++LL T NI +++LL ++ Q LEF F Sbjct: 7 ALERIRDLILPVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVF 66 Query: 75 PTILLFTTLLRLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 P++LL TTL RL LNVA+TR+IL + G AAG V+E+FG F+ G A+GI++F+I+ Sbjct: 67 PSLLLATTLARLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIII 126 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 ++I FMVITKGA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+AD Sbjct: 127 IVIQFMVITKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQAD 186 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 F+G+MDGASKFVRGDAIAGI+I +INIVGG ++G LQ GMS+ AAE YT LTIGDGLV+ Sbjct: 187 FFGAMDGASKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVS 245 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 Q+PA +IS AAG++VTR S ++ + V QL S P ++++ A LGLL + G+P + Sbjct: 246 QVPAFLISLAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPL 304 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKM----AENNTVVEATWNDVQLEDSLGMEVGY 369 L G LG+A++I+ ++++ A+ + + E E D D + ME+G Sbjct: 305 LTLCGGCLGIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGV 364 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 L+ + + G+LL R+ +R+ A E+G + P V IRDNM L +YRI + + Sbjct: 365 GLVRLAAPDRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAE 424 Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489 YP R LAI + G LPGE T DPA+ A+WIE L+ QA++ GYT+VE S+V+A Sbjct: 425 NTIYPDRLLAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLA 484 Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549 THL + +HA EL R + LLD + E P + ++L+PGV+ L + VL NLL E+V Sbjct: 485 THLQRVAKKHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEV 544 Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609 PIR + ILETL +HA D LT VR L R I ++ ++++ V+ LD ++ Sbjct: 545 PIRQLAIILETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDR 604 Query: 610 LLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665 + + G + P + + + +G PP++LVN +RP L + Sbjct: 605 IAAGIDTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNH 664 Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691 +P L+VLS+ E++ + I I Sbjct: 665 IPDLIVLSHNEVTRDTLIESVGIISD 690 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 314/675 (46%), Positives = 464/675 (68%), Gaps = 8/675 (1%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + + I+LIL M++P+P F+LDL T +I LSI+++LVA + ++ L+F+ FP++LL Sbjct: 9 SDVLVAVGIILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVLL 68 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 TL+RL+LN+ASTR+IL G G AAGKV++AFG F+V GNF +G++VF+ILVIINF+ Sbjct: 69 IATLMRLSLNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINFI 128 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 VITKGAGRIAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+MD Sbjct: 129 VITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAMD 188 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GASKF+RGDAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL+ Sbjct: 189 GASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPALI 248 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 STAAG++V+R +T+ ++G+ ++ QLF NP + ++ VL LLGL+PG+P+L F++ Sbjct: 249 TSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAVV 308 Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 +A+ + +E+K P + E +EA + D + +E+GY LIP+V+ + Sbjct: 309 SGAIAYLMISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLVEGES 368 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 L+ RIRS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + + GR+LA Sbjct: 369 S--LVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFLA 426 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 I + G T DPAFG++A+WIE +AQ+ G+TVV+AS+V+ THL ++ + Sbjct: 427 IGARPGQD-IDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKNY 485 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 EL G+QE Q+LLD +A+ P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TILE Sbjct: 486 GYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTILE 545 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG- 618 TL+E+A + DP LT VR AL R IT+ + I + LER +++LQ Sbjct: 546 TLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTPQ 605 Query: 619 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 +P L ++ + ++ + G PVL+ + ++R + R + R P L VLS Sbjct: 606 GINFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLSP 665 Query: 675 LELSDNRHIRMTATI 689 E++ I M T+ Sbjct: 666 QEIAPGVKILMFGTV 680 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 307/677 (45%), Positives = 443/677 (65%), Gaps = 9/677 (1%) Query: 23 AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82 P+ L+++ +MV+P+P+F+LD+ F NI +S+ VL+VA+ + L+F++FPT+LLF T Sbjct: 20 ILPLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFAT 79 Query: 83 LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142 LLRL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VIT Sbjct: 80 LLRLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVIT 139 Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202 KGAGR++EV ARF LD MPGKQMAIDADLNAGL+ +EAK RR EV EADFYGSMDGAS Sbjct: 140 KGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGAS 199 Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262 KFV+GDA+AG+LI+VINI GGL++G L HG+S+ AA +Y +L IGD LVAQ+PAL++S Sbjct: 200 KFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSI 259 Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 AA IVTRVS+ D+ Q+ +Q F + AA+LGLLG+VPGMP+++ L A Sbjct: 260 AAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMIILSAAAVAGF 318 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEAT----WNDVQLEDSLGMEVGYRLIPMVDFQ 378 +AW + ++ A A N + WN++ +LG+E+GY L+ +VD + Sbjct: 319 VAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGLELGYGLVGLVDER 378 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + L+ RI IR++ ++EMGF+ P+V +RDN+ L P YRI + GV +G + +P + L Sbjct: 379 KGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMGEDECFPEQLL 438 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A++ G G + G DP+FGL A+WI + A + GYTVV+ +TVVATHLN +I+ Sbjct: 439 ALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVVATHLNQVIAA 498 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 AA+LFG EAQ+LLD + + P+L L P ++L + + LL E VP++D R I Sbjct: 499 TAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEGVPLKDFRRIA 558 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 E + + A +D L +R +G I Q P K + V+ LD LE LL QA++ Sbjct: 559 EAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLESLLAQAVRTSP 618 Query: 619 G----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 G EP LA+R++A EA ++ + R L+R L+ LP+ V+S Sbjct: 619 GASHPFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIARRALARLLKPHLPETPVMSF 678 Query: 675 LELSDNRHIRMTATIGG 691 LE+ D + + + A +GG Sbjct: 679 LEIPDGKAVEVAAVVGG 695 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 278/693 (40%), Positives = 419/693 (60%), Gaps = 6/693 (0%) Query: 3 NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62 N ++M + L + + ++ I+ ++++P+PA +LD+L ++ S+++L+ A Sbjct: 8 NASSMPSAKSLLDGLMRGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTA 67 Query: 63 MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122 + ++ LEF +FPT+LL TTL RL LN+ASTR+IL G G AG V+EAFGH ++ GN Sbjct: 68 ILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILSHGQEGTGGAGAVIEAFGHLMMQGN 127 Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182 F IG++VF+IL+++NFMV+TKG+GRIAEV ARF LD MPGKQMAIDADL+ GLI +DEAK Sbjct: 128 FVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAK 187 Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242 RR E+ QE+ F+G+MDGASKFV+GDAIAG++I INI+GG+++GV+QH M G AA +Y Sbjct: 188 IRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTY 247 Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302 T++TIGDGLV+QIPAL+IS AAG++V++ + + + QL NP + + +A G++ Sbjct: 248 TIMTIGDGLVSQIPALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGII 307 Query: 303 GLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA-EPKPVKMAENNTVVEATWNDVQLED 361 L+PGMP F LA+ +K A +P ++ A + E + D Sbjct: 308 ALIPGMPIFPFAAMALAAGALAYKRVQDAKKPKALDPADLEAAAPSEPEEEPISASLAID 367 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 + +E+GY L+ +++ +L +IR++RK A E GF+ P V I DNM L Y I Sbjct: 368 DVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIR 427 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 +K +E G+G+ G + ++P LPGE +PAFGL A WI L+E+A +GYTV Sbjct: 428 IKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTV 487 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V+ +TV+ THL ++ ++ A+L E Q+LL + + KL +DL+PG VT TT+ +VL Sbjct: 488 VDPATVLTTHLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVL 547 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q+LL E+V IRD+ ILE + E AP + +L VR L R + + +I Sbjct: 548 QSLLRERVSIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIIT 607 Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 L E+ +AL G G L P + +++ R + G PVLL + +RP Sbjct: 608 LSADWEQAFAEALIGPGDDKQLALPPSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRP 667 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + + R Q VV+S E+ ++ + Sbjct: 668 YVRSIIERFRGQTVVMSQNEIHPRARLKTVGMV 700 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 229/700 (32%), Positives = 391/700 (55%), Gaps = 33/700 (4%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + + +L+L ++ MMVLPLP +LD+L N+ +S+++L++A++ L+F+AF Sbjct: 11 RIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAF 70 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P +LL TTL RLAL+V++TR+IL++ A AG++V FG+F+VGGN +GIV+F+I+ Sbjct: 71 PAVLLVTTLFRLALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIIT 125 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ F+VITKG+ R+AEV ARF LD MPGKQM+ID D+ AG+I +EA++RR+ + +E+ Sbjct: 126 IVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQM 185 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 +GSMDGA KFV+GDAIAG++I+ +NI+GG+ +GV Q G++ A + Y++LT+GDG+V+Q Sbjct: 186 FGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQ 245 Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +PAL+I+ AG+IVTRVS++ D+G + Q+ + P ML+ +L L GL+PG P + Sbjct: 246 VPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVT 305 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPK------------PVKMAENNTVVEATWNDVQLE 360 FL+ A L+G ++ R+Q E A + + Sbjct: 306 FLIL-ALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGRLGEQ 364 Query: 361 DSLGMEVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 ++ M V LI + QQ+ L + +R+ ++G P +H+R N + Sbjct: 365 EAFAMTVPL-LIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEG 423 Query: 417 RYRILMKGVEIGSGDAYPGRWLAIN--PGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474 Y I ++ V + G+ G L +P E W+ +E+ Sbjct: 424 EYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERL 483 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + S V+ HL+H++ ++A + G QE + LL+++ +L ++ V +V L Sbjct: 484 EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPL 542 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594 + ++LQ L+ E + IR+MR+ILE + E + D +LT +R +L R I ++ G Sbjct: 543 QRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGN 602 Query: 595 DEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLL 649 + + D +E + A++ L+P + + LL Q ++ + + + PVL+ Sbjct: 603 NILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLI 662 Query: 650 VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 V+ +R + + + L VLS EL+ +I+ + Sbjct: 663 VSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 283/697 (40%), Positives = 433/697 (62%), Gaps = 19/697 (2%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 +L+ N+K + LA P +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+ T+ Sbjct: 3 LLKKFKNIKLS----LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTK 58 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 R L+F+ FPT+LL TL+RL LNVASTRI+L+EGH G AAG V++AFG ++GGN+ +G Sbjct: 59 RVLDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVG 118 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 +VVF+IL+IINF+VITKG RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR Sbjct: 119 MVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQ 178 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 E EA+FYGSMDGASKFVRGDAIAG+LI+ IN++GG+L+G+ H MS + +++ LLT Sbjct: 179 ETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLT 238 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305 IGDG+VAQIP+L+++T+A VIVTRVS +D D+ + + Q+ S PSV+ SA V+ ++GLV Sbjct: 239 IGDGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLV 298 Query: 306 PGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT--WNDVQLEDSL 363 P MP+L FL+F A L + W ++++ E + + E W V + + Sbjct: 299 PNMPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPI 358 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 + +G++L+ +++ + LL I+ RK ++E+GFL P V IRDN+ L+P Y I + Sbjct: 359 TLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFID 418 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 G E+ G G +A++ + G++ G DPA+ + A+WI K A GY V+ Sbjct: 419 GEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVIS 478 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 + V+ATH+N ++S + A +F + + + D++ P+L+E L V L +++N Sbjct: 479 LADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQ-IIKN 537 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LL ++VP+++ + I T+ + DP +++ VR AL R I P + + L Sbjct: 538 LLIDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLS 597 Query: 604 TPLERLLLQALQGGGG-----------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 + L+ +L A+ ++P L +L + G P+LLV+ Sbjct: 598 SELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSP 657 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +RP++S+F R L+VLS E++D+ I + Sbjct: 658 TVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 260/679 (38%), Positives = 403/679 (59%), Gaps = 21/679 (3%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + + + I++M+V+PLP ILD+L ++A+ ++VLL ++ +F+ FP++LL Sbjct: 9 SDVILGVGAVAIVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIFPSLLL 68 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVVFVILV 134 TTL RLALNV++TR IL +G A V++AFG F++G + +G ++F+ILV Sbjct: 69 ITTLYRLALNVSTTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFIIFIILV 125 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 ++ +VITKGA RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR + E DF Sbjct: 126 LVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIEAEVDF 185 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YGSMDGASKFV+GD AG++I IN++GG+++G G S A E+Y TIGDGLV+Q Sbjct: 186 YGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGDGLVSQ 245 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IPAL+ + A G+IVTR ++ D+ Q +QLFSN V+ + A LG +PG+P + + Sbjct: 246 IPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLPFIPLV 305 Query: 315 LFTAGLLGLAWWIRGR-EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373 + +AG+ L + + +++ + K K + + + + +++ D + +EVGY LIP Sbjct: 306 ILSAGIAYLGYSLEQTVKEQLESIEKKEKESGQDRKPKDFYEELR-TDPIEIEVGYHLIP 364 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 +VD Q G LL +I ++RKKFAQ+ G + P V I DN+DL P Y I + G E+G Sbjct: 365 LVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGISTVK 424 Query: 434 PGRWLAINPG-TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 P + +A+N A ++ GE ++P+FG A WI S K +A+ +GYTVV+ASTVV THL Sbjct: 425 PDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVVVTHL 484 Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL-VPGVVTLTTLHKVLQNLLDEKVPI 551 L++ HA+ L GR+E ++LLD P L +L L + +VLQNLL E + I Sbjct: 485 KELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQNLLREGLGI 544 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R++ ILE++A + +P+ LT +VR ++ R + + + ++ VI L++ + L Sbjct: 545 RNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRILDRLN 604 Query: 612 QALQGG-------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664 +++ L P +L+ E M G P+ +VN +R S L + Sbjct: 605 KSITQDRIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSYLLAK 664 Query: 665 SLP--QLVVLSNLELSDNR 681 P VL+ E+ + Sbjct: 665 EFPPRNFGVLAYEEIHSSV 683 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 250/681 (36%), Positives = 407/681 (59%), Gaps = 12/681 (1%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + + I++IL+++ LP+PA +LD+ F+IA S+++L+VA++ QR L+F+AFPT+LL Sbjct: 45 SDIGLAVGIIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWIQRPLDFSAFPTVLL 104 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 T++RL+LN+A+TR+IL G+ G AAG V+ F F++GG+F IG+VVF IL+I+NF+ Sbjct: 105 IATMMRLSLNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVIGLVVFAILIIVNFL 164 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 VITKGA RIAEVGARF LD +PGKQMAIDADL++GLI E EA++RR E+ +E+ F+GSMD Sbjct: 165 VITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELEEESSFFGSMD 224 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GASKFVRGDAIAG++I +NI GG+++G +HGM + AA+ +T L++GDGLV QIPAL+ Sbjct: 225 GASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLVTQIPALI 284 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 +S AAG++V++ T + + QL + P +L++A +L +LG++PG+P F L Sbjct: 285 VSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFPFFLLGGA 344 Query: 320 LLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376 + + + R+++A A K E + + + + +G +L + Sbjct: 345 MAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLSARLI 404 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436 Q+ EL R+ +R+KFAQE GF+ P + + D++ L P YRI + G + S + G Sbjct: 405 ASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGTAVASHELRVGE 463 Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 L + ++PGE +PAFG+ A + + +GY V+ +V+ THL+ ++ Sbjct: 464 ILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNLSVLLTHLSEIV 523 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 + A+L ++ + LLDR+ E KL ED+ P ++ + L VL+ LL E++ IR++ Sbjct: 524 RNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLLAERISIRNLHL 583 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616 ILE +AE AP+ P + VR+ + + I ++V+ L + + Q+L+ Sbjct: 584 ILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLGNRWDLVFHQSLKR 642 Query: 617 GG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 ++P L ++ + A+ + G VL+ + RP + + R L Sbjct: 643 DAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARPYIRMIIERLFATL 702 Query: 670 VVLSNLELSDNRHIRMTATIG 690 VLS++E++ ++ I Sbjct: 703 PVLSHVEIARGVEVKSLGAIS 723 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 258/707 (36%), Positives = 403/707 (57%), Gaps = 31/707 (4%) Query: 12 ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 +N +++ + ++++ I+ MM++PLP +LD+L T NI++S+++LLV+++ L Sbjct: 6 SNSFLSKYSDIVLAVVVVAIVGMMIVPLPTLLLDVLLTLNISISVVLLLVSLYVPAALHL 65 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 + FPT+LL TT+ RLAL +++TR+IL+ G G+VV AFG+F+V GNF +G ++F+ Sbjct: 66 SVFPTLLLITTMFRLALTISTTRLILLTGDP-----GEVVVAFGNFVVQGNFVVGAILFI 120 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK+R ++ +E Sbjct: 121 ILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRRDLERE 180 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 + +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YTLLTIGDGL Sbjct: 181 SQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLTIGDGL 240 Query: 252 VAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 V IPA+++ST AG+IVTRV+ +++ +G M +QL + P + ++A +L +LGLVPG+ Sbjct: 241 VGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLGLVPGL 300 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE---------NNTVVEATWND--- 356 P + F L G AW + ++Q+A E EA D Sbjct: 301 PKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALNPDSEL 360 Query: 357 -VQLEDSLGMEVGYRLIPMVDFQQDGE--LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 + + + +EV L+P VD +QD L I +R E+G P V R N L Sbjct: 361 FIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRARGNGSL 420 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALK 471 P Y+I + V + +G A G L + + G V+PA A W+ + Sbjct: 421 PPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWVPEQYR 480 Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531 + + G T + + H ++ ++A E G QE Q +L+++ + P + +++VP V Sbjct: 481 DTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKEVVPKV 540 Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591 V + L +LQ L++E++ IRD+R IL+ LAE+ +++D LT VR A R I+ ++ Sbjct: 541 VNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYISHKYA 600 Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPP 646 G + V LD +E + +++ LEP LA ++ + P Sbjct: 601 RGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECGHLPPSAQRP 660 Query: 647 VLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692 V+L +R + + L P VLS ELS +I+ A I + Sbjct: 661 VILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 267/703 (37%), Positives = 414/703 (58%), Gaps = 36/703 (5%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + + L ++ IL+++++PLP+ ILD +IALS++++L++++ + + FPT+ Sbjct: 23 KAKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTL 82 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 +L TL RL+LN+A+TR+IL EG G A +++ AFG F+VGGN IG++VF ILV+IN Sbjct: 83 ILIITLFRLSLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLIN 142 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 FMV+TKG+ R++EV ARF LD MPGKQMAIDADLNAGLI E A+ RR EV EA+FYG+ Sbjct: 143 FMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGA 202 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDG+SKF++GDA+AGI+I +INI+GG L+G QH M++ AA +YT+LTIGDGLV+QIP Sbjct: 203 MDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPG 262 Query: 258 LVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316 L+ STA +I+TR S +++ E + QL S +L+ VL + LVPG+P L Sbjct: 263 LITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFM 322 Query: 317 TAGLLGLAWWIRGRE---------QKAPAEPKPVKMAENNTVVEAT-------------- 353 L L + + + +K+ + A Sbjct: 323 ALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEH 382 Query: 354 -WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD 412 ND+ + L +E+GY LI + + EL RIRS+R+ A+ +GFL P + IRDN+ Sbjct: 383 KINDILKVEILELELGYGLIKLA----ENELTERIRSMRRSIAESLGFLMPKIRIRDNLR 438 Query: 413 LQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKE 472 L+P Y +KGV I S + YP ++LA++ G + G AT +PAF +A+WI++ LK+ Sbjct: 439 LKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKD 498 Query: 473 QAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVV 532 +A + GY V++ ++V++TH++ LI HA+EL RQE Q LLD+V + P + E + GV Sbjct: 499 EATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGAL-GVA 557 Query: 533 TLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP 592 ++ + K+L++LL +PI+DM TILE++++ A + + VR +L R IT + Sbjct: 558 PVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLD 617 Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPP- 646 K + + LD+ +L++ +Q G L L+ + ++ P Sbjct: 618 DKGNLDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPF 677 Query: 647 VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +L V LR ++ +VVLS E+++N + I Sbjct: 678 ILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 257/675 (38%), Positives = 396/675 (58%), Gaps = 15/675 (2%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 LA + ++ IL ++ P+P+ +LD+L N + +++LL+ F + L F+ FP++LL Sbjct: 15 SELALVLGMVGILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLLL 74 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 TL RL+LN+A+TR+IL +G AG+V+ A G ++VGGN+ IG+VVF+IL+++ ++ Sbjct: 75 IATLFRLSLNIAATRLILSDG-----DAGEVINAIGTYVVGGNYVIGLVVFLILIVVQYV 129 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 V+T GA R+AEV ARF LD MPGKQM+IDAD+N GLI E EA++RR + +EA FYG+MD Sbjct: 130 VVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAMD 189 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GASKFV+GDAIAGILI++I+I+GGL VG+ Q G+S G A SYTLLT+GDG+V QIPALV Sbjct: 190 GASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPALV 249 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 ISTA G+I+TR +TD +G+++ Q+ P +++ L L L+PG+P L + + Sbjct: 250 ISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVASL 309 Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 + L + + + AE + + LE SLG + L Sbjct: 310 MAALVVYAFKQNKYQEAEDNVEDQEDAEKDIYEELKVEPLEISLGPSIAGYL-----GAS 364 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 +G L+ I+ +RK+ A E+GF+ P V I Y++ + G ++ G+ Y R LA Sbjct: 365 EGALMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRILA 424 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 I+ LPG + DP +GL A+WIE LKE+A+ T+V+ TV+ TH+N + Sbjct: 425 ISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRLQ 484 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 A L R E ++L+ RV L E+LVP +TL+ + KVLQ LL EKV IR++ I E Sbjct: 485 APALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIAE 544 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 L + + D +L VR LG I Q +HV+ +D +E+L+ ++ Sbjct: 545 ALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTEQ 604 Query: 620 -----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 ++P L +++L+ + + +G PVL+ + +R + + R LP L VL+ Sbjct: 605 GASLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLAL 664 Query: 675 LELSDNRHIRMTATI 689 E+ +I+ + + Sbjct: 665 TEVPVGMNIKSFSIV 679 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 303/700 (43%), Positives = 458/700 (65%), Gaps = 17/700 (2%) Query: 1 MSNLAAMLRLPANLKSTQW---QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57 M + + A++ ++W Q L GPI++++IL+M+V+PLP +LD+LFTFNI S++ Sbjct: 1 MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60 Query: 58 VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117 +L A +T++ L+F+AFPT+LL TLLRLALNVA+ R+IL++G+ G AAG V+E+FG F Sbjct: 61 ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120 Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177 +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180 Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237 +++AKKRR ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+ Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240 Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296 AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G + QLF N +L++A Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN- 355 +LG+ G++PGMP+ FLL+ + + ++ + + + AE VVE + Sbjct: 301 IILGITGIIPGMPHWAFLLYALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPIDA 360 Query: 356 -DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414 ++ + +G+ +GY+LIP++ Q+DGEL R+ +R++ ++ GF+ P +H+ D++ L+ Sbjct: 361 RVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTLR 418 Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474 P YRI + G+ G+ + + LAI G+ + G T DP +G A WI + A Sbjct: 419 PGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDA 478 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 ++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+ KL + ++P +VT Sbjct: 479 ELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTA 538 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594 L KVL++L+ E+V +RD+ ILE+LAE +L ++R LGR I G+ Sbjct: 539 PKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGR 598 Query: 595 DE---VHVIGLDTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAP 645 D + + ++ +L A LEP + L ++A+++ E Sbjct: 599 DRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMR 658 Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685 PV+LV A+R LS +LR + + VL E+ ++ Sbjct: 659 PVILVRDAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 296/676 (43%), Positives = 435/676 (64%), Gaps = 10/676 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA I +L IL+++++PLP LD+ +I LS+++LLVA+ R +EF+ FP++LL Sbjct: 17 LAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFPSLLLLV 76 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLALNVA+TR+IL +G GA AAG ++E FG F VGG+ +G+VVF+IL+I+NF VI Sbjct: 77 TLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLIVNFTVI 136 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR + +E +F+G+MDGA Sbjct: 137 TKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFFGAMDGA 196 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDA+AG+ I +NIVGGLL G+L+ +S+ AAE+YTLLT+GDGLV+Q+PAL++S Sbjct: 197 SKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQMPALLVS 256 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 TAAG++VTR + D+G Q+ +Q+ P V+ +A VL LGL+PGMP + F LL Sbjct: 257 TAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGGVAGALL 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 A GR++ A P+P + ++ LE + VGY L+P++D + G Sbjct: 316 LAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALE----LGVGYGLVPLIDLDKGG 371 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 EL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P R +A++ Sbjct: 372 ELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPERLMALD 431 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 P + G VDPAFGL A+WI A + +A+ G T+V+A++V+ THL+ L+ ++A Sbjct: 432 PNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSELLRRNAH 491 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 E+ GRQE Q+LL + ++ PKL ED+VPG ++L L +V++ LL E V +RD+RT+LE + Sbjct: 492 EIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLRTVLEAV 551 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-- 619 A+ AP +P L R L R +T + V + LD E L L G Sbjct: 552 ADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLGASDGEA 611 Query: 620 -LEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 L P + A RL+A + +R G P VLL LR L F R +P + VL+ E Sbjct: 612 ALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQVLAARE 671 Query: 677 LSDNRHIRMTATIGGK 692 L+ + T+ + Sbjct: 672 LAPGTTVEPAGTVQAQ 687 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 691 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 286/680 (42%), Positives = 421/680 (61%), Gaps = 13/680 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 LA P+ + ++ +M++P+PA +LDLL ++A S++V L A+ ++ ++F+ FPT+LL Sbjct: 24 LALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLLLL 83 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+V+ Sbjct: 84 TLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFLVV 143 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 + GA R AEV ARF LD +PGKQMAIDAD+NAGLI E A++RR + QEA+FYG+MDGA Sbjct: 144 SHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMDGA 203 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 ++F + D++A ILI INIV GLL+G LQHG+++ A ++YT+LT+GDGLV IP+L++S Sbjct: 204 ARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLLVS 263 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 A G+++TR S+ + ++ QLF + + +++ VLG L LVPG+P L FL+ L Sbjct: 264 VAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVILA 323 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381 G+ + + A + K A+ + + V D L +E+G++LIP+VD Q G Sbjct: 324 GIGRTVTKEQPAEEAAEEAGKKADPSRA--DNLDSVLKVDDLSLEIGFQLIPLVDEAQGG 381 Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441 +L R+R++R+ A E+GFL P VHI DN+ L+P Y + ++G+EIG + LA++ Sbjct: 382 LMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLAVS 441 Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501 + G+ +PAFG NA WI L+EQA GY+VV+ +T ++THL LI HA Sbjct: 442 NEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTHAH 501 Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561 EL R E ++LLD + + PKL E+LVP V++L + KVLQ LL E+V IRD+ TILETL Sbjct: 502 ELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILETL 561 Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621 E A + VR ALGR +TQ+ + V+ L+ LE L+ A Q + Sbjct: 562 VEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQSEPPTD 621 Query: 622 -------PGLADRLLAQTQEALSRQ---EMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 P A L A+ E+L + A PVLL R L R+L P++ V Sbjct: 622 ALLDRRTPASAQ-LFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPRITV 680 Query: 672 LSNLELSDNRHIRMTATIGG 691 L+ E+ + + G Sbjct: 681 LAPPEIGPEIRVHSIGVLRG 700 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 280/685 (40%), Positives = 421/685 (61%), Gaps = 10/685 (1%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N++ LA P IL I+ +MV+P+PA +LD+ NIALS+ VL+ AM Q+ L+F+ Sbjct: 2 NVRHFLNPGLALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFS 61 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FP++LLF TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+I Sbjct: 62 SFPSVLLFATLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLI 121 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L+IIN MV+TKGAGR++EV ARF LD +PGKQMAIDADL AGL+ DEAK RR E+ EA Sbjct: 122 LMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEA 181 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYGSMDGASKFV+GDA+A +LI++IN++ GL++G+ HG++ G AAE+Y L +GD LV Sbjct: 182 DFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALV 241 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 A +PAL++S AA VIVTRVS +D+ Q+ QL ++P + L A +L ++G +P MP + Sbjct: 242 ASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSI 300 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 L ++G L + +R + P+P + + + +V + + +++GY LI Sbjct: 301 ILPLSSGTFYLWFRLRKNHEARKEMPEPEAKPDPSHIT---IEEVTDQTLVTVQLGYGLI 357 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 + D ++ L+ R+ +RK+ Q GF+ P I D+ +L P YRI + G +G G Sbjct: 358 SLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKI 417 Query: 433 YPGRWLAINPGTAAGT--LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 PG LAI+ G G+ +PG TVDP+FG A+WIE ++ A +GY V+ +V+AT Sbjct: 418 NPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIAT 477 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 ++ L+ A +L G + + L++ + +L + + P ++L L ++L++LL + + Sbjct: 478 QVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGIS 537 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610 +R + +++ A ++ L +VR LG I + P ++ VI L LE ++ Sbjct: 538 LRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMV 597 Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 LQ +EP LA + + + +++ P L+V R LS LR Sbjct: 598 TGGLQDPSSGEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRA 657 Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691 PQ +VLS EL + I + A +G Sbjct: 658 PQCLVLSINELPVAQPIEVIAVVGD 682 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 291/737 (39%), Positives = 426/737 (57%), Gaps = 60/737 (8%) Query: 11 PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70 P + T + L I+ IL+++++PLP+ +LD +IALS +++L+A++ ++ + Sbjct: 16 PFLSQLTGSKDLTVVFFIIAILAIIIVPLPSALLDFFLAISIALSALIILIALYVKKPTD 75 Query: 71 FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130 F+AFPT+LL TL RL+LN+A+TR+IL GH G A ++ AFG F+VGGN+ IGI++F Sbjct: 76 FSAFPTLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILF 135 Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 +ILVIINFMV+T G+ R++EV ARF LD MPGKQMAIDADLN GLIG++EAK RR E+ Sbjct: 136 IILVIINFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAA 195 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 EADFYGSMDGA+KFV+GDAIAGI+I +INI+GG L+GV Q MS+ AA ++T+LTIGDG Sbjct: 196 EADFYGSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDG 255 Query: 251 LVAQIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 LV+Q+PAL++STA G+IVTR S + ++ +V+QL + +++ +L L LVPG+P Sbjct: 256 LVSQLPALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLP 315 Query: 310 NLVFLLFTAGLLGL-----------------AWWIRGREQKAPA--EPKPVKMAENNTVV 350 + L L + + + R+ KA P P + + + Sbjct: 316 TISLGFVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGG 375 Query: 351 EATWNDVQL--------------------------EDSLGMEVGYRLIPMVDFQQDGELL 384 + N Q L + +GY+LI D Q GEL+ Sbjct: 376 QTPQNAQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELV 435 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 +IR+IRK A E G L P+VH+RD+++L P Y+IL+K +EIG G ++LAI Sbjct: 436 NKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSG 495 Query: 445 AAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 G LP G T +P FGL+A WI+ KE A I+GYT+++ +TV++TH+ LI Q+A EL Sbjct: 496 FVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEEL 555 Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563 RQE L+ ++ Q+ P L E++ V + T+ +L+ LL E++PI+DM +I E +A+ Sbjct: 556 LTRQEVANLVAKLGQDYPILAEEI--KGVGIGTIQHILKELLHEQIPIKDMLSIAEAIAD 613 Query: 564 HAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL------QALQG 616 P D L+ VR L R IT + + L LE+ LL Q + Sbjct: 614 GYPAYKADLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ 673 Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLL--VNHALRPLLSRFLRRSLP--QLVVL 672 L P + LL A + +GA P ++ V LR L+ FL + +VVL Sbjct: 674 RLRLSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVL 733 Query: 673 SNLELSDNRHIRMTATI 689 S E+ + +I Sbjct: 734 STAEIDYQSKFEILGSI 750 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 308/680 (45%), Positives = 429/680 (63%), Gaps = 12/680 (1%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 + P+ IL +++MMVLPLP +LDL F NI LS+++L+VA+ T R L+F++FP+ILL Sbjct: 17 MTLPLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFPSILLVA 76 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 T+LRLALNVASTRI+L GHTG AAGKV+EAFG F++GGNF +G VF ILVIIN +VI Sbjct: 77 TVLRLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVIINLVVI 136 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGAGR++EV ARF LD MPGKQMAIDADLNAGL+ DEA++RR++V EADFYG+MDGA Sbjct: 137 TKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFYGAMDGA 196 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFV+GDA+AGILI++INIVGG+++G LQHG+ + AAE+Y LL+IGDGLVAQIP+L++S Sbjct: 197 SKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQIPSLLLS 256 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 A +IVTRVS+ D+ + Q+ + AAV+ +LGL PGMPNL+FLL Sbjct: 257 IATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMPNLLFLLGGVAAA 315 Query: 322 GLAWWIRGRE-------QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374 +AW RE A V+ T DV + +++GY LIP+ Sbjct: 316 AMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAPISLQIGYGLIPL 375 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 G L+ RI +IR+ ++ +GF+ P V IRD++ L P +YRI + + YP Sbjct: 376 A-GDNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQAILAEDTVYP 434 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 R LA+ G + L G A DP+FGL A WI +A+ + VVE +V+ATHL+ Sbjct: 435 DRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEPESVIATHLSQ 494 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 ++ +HAA+L G+ + Q L+D + + P L + +VP +V L L VL+ LL +++P+ DM Sbjct: 495 ILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKALLADRIPVSDM 554 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 R ILE L++ A P E+ +R AL + QQ P + +I L+ LE+LLL++ Sbjct: 555 RRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEPDLEQLLLRSR 614 Query: 615 QGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 + G + + GLA LL E L G ++V LR + F+R LP VV Sbjct: 615 RQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAFVRPHLPDAVV 674 Query: 672 LSNLELSDNRHIRMTATIGG 691 + EL + R + + T+GG Sbjct: 675 IGMGELPEARRVEVLGTVGG 694 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 241/686 (35%), Positives = 409/686 (59%), Gaps = 15/686 (2%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 L L + ++ +++ +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ Sbjct: 13 LGLNNKSDLIISVGLIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSV 72 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPT+LL T+ L LN++STR+IL +G G+++ FG F+VG + G+V+ I+ Sbjct: 73 FPTLLLVMTIFGLVLNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFII 129 Query: 134 VIINFMVI----TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 II V TKGA R+AEV ARF LD +PGKQMAID+ ++G + E+EA ++++++ Sbjct: 130 FIIIIAVQFIVITKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQ 189 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 E +FYG+MDGASKFV G+ G LI +INI+GGLLVG+ G++ A +Y LT+GD Sbjct: 190 SEVNFYGAMDGASKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGD 249 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 GLV+Q+P+L+IST+ G+IVTR + G ++ +Q ++ + + + L L +PG P Sbjct: 250 GLVSQLPSLLISTSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFP 309 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPK-PVKMAENNTVVEATWNDVQLEDSLGMEVG 368 L+ + + + LA+ + G QK + K ++ + + + + V D L +E+G Sbjct: 310 TLILMFLSLSIAFLAYSLSGIRQKEEIDKKMKLEEEQASIYSDKDVSPVVPLDPLALEIG 369 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y L+P+VD + ELL RI IR++ A E G + P + I DNM L+P Y ++GVE+G Sbjct: 370 YNLVPIVDDTKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVG 429 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 G+ G++L IN G +G + G+ DP+FGL ++W+ +E A+ GYTVV+ +++ Sbjct: 430 RGEIKLGKFLVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSII 488 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATH+ LI +H+ E+ RQ+ Q LD ++ + E+++ ++ + +VLQ LL E+ Sbjct: 489 ATHMTELIKRHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQ 547 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 V IR++ TI ET+A+ I D L R ++GR IT + E++VI L+ E+ Sbjct: 548 VSIRNLVTIFETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQ 607 Query: 609 LLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 +++ + ++P L + + + + ++ + G PV+L + + RP++ Sbjct: 608 MIIDSRVESNHDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITS 667 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689 R +P LVV+S LE+ N + + T+ Sbjct: 668 REIPDLVVMSVLEVPQNIKVNVLKTV 693 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 284/665 (42%), Positives = 415/665 (62%), Gaps = 14/665 (2%) Query: 33 SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92 + ++PLP +LD+L FNI+ ++++LLV + ++ LEF+ FP++LL TL RLALNVA+ Sbjct: 41 VIFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQPLEFSTFPSLLLLLTLFRLALNVAT 100 Query: 93 TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152 TR++L+ G AG +VEAFG F+VGG+ +G+V+F+IL++I F+VITKGAGR++EV Sbjct: 101 TRLVLLNG-----DAGTIVEAFGKFVVGGSLIVGLVIFLILIVIQFVVITKGAGRVSEVA 155 Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212 ARF LD +PGKQMAIDA++NAG+I E EAK+RR+ + +E++FYG+MDGAS+FVRGDA+A Sbjct: 156 ARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLMRESEFYGTMDGASRFVRGDAVAA 215 Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272 I+I IN+ GG ++G L GM + A Y++LTIGDGLV QIPAL+ +TA+ ++VT+ + Sbjct: 216 IIITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIGDGLVTQIPALITATASAMLVTKAT 274 Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQ 332 + +GE++ Q + L+A +L L LVPGMP L FL LL L+ + + Sbjct: 275 SGTSLGEELGGQFSAASGPFRLAAFILIALALVPGMPMLPFLALGVALLLLSRRMSRVPE 334 Query: 333 KAP------AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGR 386 P A A + + VE +D D + +E+G LIPMV ++ L+ R Sbjct: 335 LPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRVSLEIGAALIPMVSARRGPGLIDR 394 Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446 I +R+ A++ G P V +RDN+ L P YRIL+ G E+ GD P WLAI+PG AA Sbjct: 395 IGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLGGREVARGDVRPDLWLAIDPGGAA 454 Query: 447 G-TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505 L GE +PAFGL A WI A + +A+ G+TVV++ V+ THL ++ +HA EL G Sbjct: 455 RVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVVDSPNVIITHLGEVVRRHAGELLG 514 Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565 R + + ++DRV + P + +DL+P VV++ LH+VL LLDE+VPI ++ ILE+LA HA Sbjct: 515 RDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLTQLLDERVPISNLPRILESLAAHA 574 Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-GLEPGL 624 P DP EL VRV LGRA+ ++ + I LD LE L +A+Q ++P Sbjct: 575 PTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVLDPRLELDLKRAVQNNQLIIDPSR 634 Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 ++L + L + G LL + LR L L R+L L V+S E+ + + Sbjct: 635 LEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRHSLARALHDLSVVSYQEIPTDLLME 694 Query: 685 MTATI 689 A I Sbjct: 695 PVAVI 699 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 264/702 (37%), Positives = 416/702 (59%), Gaps = 29/702 (4%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 + K + L L L +L+++++PL LD + ++A+S ++LL++++ Q+ + Sbjct: 4 DFKKIFTRDLIAVALFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPADLT 63 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FPT++L + RLAL++A+TR IL EGH G A ++ AFG F+VGGN IGI++F+I Sbjct: 64 TFPTLILILVVFRLALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIIIFII 123 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 LV+INFMV+TKGA R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR + EA Sbjct: 124 LVLINFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEA 183 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 +FYG+MDG+SKFV+GDAIA I+I ++N+VGG+LVG+ QH +S+ A E+YT+LTIGDGLV Sbjct: 184 NFYGAMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLV 243 Query: 253 AQIPALVISTAAGVIVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 +QIPAL++STA +I+TR +TD + Q VNQL + ++L L L LVPG P Sbjct: 244 SQIPALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPTF 303 Query: 312 VFLLFTAGLLGLAWWI------------------RGREQKAPAEPKPVKMAENNTVVEAT 353 + + + GL + I ++ P + K + + T Sbjct: 304 ILMTMGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQT 363 Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 + + L +++G RL+ +V Q + ELL +I++IRK A E+GF+ P + I D+ L Sbjct: 364 IETIMKLEVLELKLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDDSYL 421 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 P Y++ +K + + G ++LA+ GT L G +P F L+A WI L+E+ Sbjct: 422 SPNEYQLYLKRIPLVKGRIEVDKFLAM-GGTGNEKLQGIHVKEPVFNLDATWITGDLREE 480 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 A ++G+TVV+A T+++TH++ +I +HA ++ RQ+ +++R+ ++ P + E+ + V + Sbjct: 481 ALMKGFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAM-KVTS 539 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593 L KV ++LL EK+PI DM TI+E +A+ A P L VR L R ITQ++ Sbjct: 540 YGALLKVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDT 599 Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV- 647 +H+I + +E+ + LQ G L + L+ +T++ L EM G V Sbjct: 600 DGILHIITIKPDVEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFSKVC 659 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++V+ LR +S + Q+ VLS+ EL + + T+ Sbjct: 660 MVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 223/682 (32%), Positives = 391/682 (57%), Gaps = 26/682 (3%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K+ + ++++ + MM+LPLP ++D+L N+ LSI++L++A++ + LEF+ F Sbjct: 10 KAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVF 69 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RLAL ++++R+IL++ AG +V FG+F+VGGN A+GI++F I+ Sbjct: 70 PSLLLITTLYRLALTISTSRLILLQ-----HDAGDIVYTFGNFVVGGNLAVGIIIFAIIT 124 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ F+VITKG+ R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK++R++V +E+ Sbjct: 125 IVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQL 184 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV+GDAIA I++++ NI+GG+ VGV+QH MS A +Y +L++GDGL+AQ Sbjct: 185 YGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQ 244 Query: 255 IPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 IP+L+IS AG+IVTRV + Q++ ++V Q+ P+ + ++ V+ + L+PG P LV Sbjct: 245 IPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILV 304 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 F + +LG + W++ ++++A A+ E + +A +D D++ ++ Sbjct: 305 FGTLGSVVLGASLWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGAVPLIL 358 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 + + ++ +R ++ +++G P + ++ +L+ + Sbjct: 359 YLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQL 418 Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 P L I+ T+P P WI+ EQA+ QG V + A + Sbjct: 419 VPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVM 475 Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 +I ++A E G QE + L+D + +L ++L ++++ + ++LQ L++E + +R Sbjct: 476 GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVR 534 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612 D+RTI ETL E P + D LT VR+AL R I +++ + + V+ + +E ++ + Sbjct: 535 DLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRE 594 Query: 613 ALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 +++ L+ ++L QE L ++ VLL + +R L + + R L Sbjct: 595 SIRQSTAGSYSALDMAQTQQILTCIQEQLPPEQT----CVLLTSLDVRRYLRKIVERELF 650 Query: 668 QLVVLSNLELSDNRHIRMTATI 689 VLS EL D+ I++ + Sbjct: 651 STPVLSFQELGDDAEIKVIGQV 672 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 231/692 (33%), Positives = 382/692 (55%), Gaps = 26/692 (3%) Query: 17 TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76 + L + ++ ++ M++LPLP I+DL+ T N+A+S+ +L+VA++ L+ + FP+ Sbjct: 22 NKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPS 81 Query: 77 ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136 +LL TT+ RL +N++S+R IL++ + AG V++AFG F+VGGN+ +G ++F+I+ II Sbjct: 82 LLLITTMFRLGINISSSRQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITII 136 Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196 F+V+TKGA R+AEV ARF LD MPGKQMAIDADL AG+I +A+ +R + +E++ YG Sbjct: 137 QFIVVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYG 196 Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256 +MDGA KF++GD IAGI+I +INIVGGL +GV HGM + AA YTLL+IGDGLV+QIP Sbjct: 197 AMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIP 256 Query: 257 ALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF- 313 +L+IS AG++ TRVS+D ++G+++ +QL P +LL++A +G G P F Sbjct: 257 SLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFS 316 Query: 314 -LLFTAGLLGLAWWIRG----REQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 L F GLLG+ + ++ + A A+ +D L + +E+G Sbjct: 317 ILSFIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELG 376 Query: 369 YRLIPMVDF---QQDGELLGRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMKG 424 L ++ + I +R+ Q++G P +H+R D+ L+ Y IL+ Sbjct: 377 KDLSALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNE 436 Query: 425 VEIGSGDAYPGRWLA--INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 V G P L + LP T A GL + W+ K + Sbjct: 437 VPYVRGKIPPHHVLTNEVEENLKRYNLPFI-TYKNAAGLPSAWVSEDAKTILEKAAIKYW 495 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 V+ HL++ + + E G QE + +++ + + P L +++ ++ L L ++ + Sbjct: 496 TPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVT-RLIPLQKLTEIFK 554 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 L+ E++ I+D+RTILE+L+E A + D LT VR +L I+ ++ G+ + V L Sbjct: 555 RLVQEQISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLL 614 Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 D +E ++ A++ L+P + +L + ++ G PPVLL +R Sbjct: 615 DPEIEEMIRGAIKQTSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRY 674 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + + + P + V+S E+ I+ I Sbjct: 675 VRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 243/698 (34%), Positives = 395/698 (56%), Gaps = 22/698 (3%) Query: 8 LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67 ++LPANL ++ + I ++++ M+++PLP+ ILD L NI +S+++LL+ + + Sbjct: 11 IKLPANL--SRHSDIMFAIGAVMVIMMLIIPLPSLILDFLLIINIIVSLLILLMVLSIRS 68 Query: 68 TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127 +F+ FP++LL T RLALNV++TR IL EG A GKV+ +F F+VGGN +G+ Sbjct: 69 ANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGGNIVVGV 125 Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187 V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA+++R + Sbjct: 126 VIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRKK 185 Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247 + E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+ G A +YT T+ Sbjct: 186 IRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFTV 245 Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GDGLV+QIP+ +S A G++VTR S++ ++ Q+ Q+F+ P + + A L L+PG Sbjct: 246 GDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLPG 305 Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGM 365 P + + L + ++ +Q+ K V + + + + + Sbjct: 306 FPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLKVEKIEL 365 Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425 VG LIP+ + G+L+ RI IR++ A E+G + P V I DN ++P Y + + G Sbjct: 366 SVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSINGT 425 Query: 426 EIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 E+ G P LA+N + G P E +PAFGL A WI+ K+ A+ +G+ + + Sbjct: 426 EMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQP 485 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP----GVVTLTTLHKV 540 ++V+ATH + I ++A L GR+E Q +LD + + L +++ L + KV Sbjct: 486 TSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQKV 545 Query: 541 LQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVI 600 LQNLL E+VPIR+ ILE +A+ I + T +VR L I+Q + VI Sbjct: 546 LQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQDRNIRVI 604 Query: 601 GLDTPLERLLLQALQGGGGLE--------PGLADRLLAQTQEALSRQEMLGA-PPVLLVN 651 L L+ + Q L G L+ L+ ++A+ G V L + Sbjct: 605 TLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDDIVFLTS 664 Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +R L +F+ +++ + V++ E++ +++ A+I Sbjct: 665 PIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 656 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 244/670 (36%), Positives = 375/670 (55%), Gaps = 23/670 (3%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP ILD L FN+ ++++LL+ +F ++ +F+ FP++LL +T+ L LNV+STR+IL Sbjct: 29 PLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLIL 88 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 G +G ++ AF F+VGG+ IG VF+IL+ + VITKGA RIAEV A Sbjct: 89 TLGDR---FSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIAVQAFVITKGATRIAEVAA 145 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD K M+IDA+ NAG+I E+EA++R+ ++ +EADF+G+MDGASKFV G+ GI Sbjct: 146 RFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGI 205 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 I ++N++ GL+VGV+ A ++YT LTIGDGL+AQ+P+L++S A G IVTR S Sbjct: 206 FITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQLPSLLLSVATGFIVTRSSD 265 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333 G+ + Q + V + + L ++ ++PG P+ + + +R RE+ Sbjct: 266 QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRKRERV 325 Query: 334 APAEPKPVKMAENNTVVEATWNDVQLE-----DSLGMEVGYRLIPMVDFQQDGELLGRIR 388 E + K ++ + + + ++ D L +E+GY LIP+VD ++ ELL RI Sbjct: 326 HVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLSLELGYGLIPLVDKEKGAELLSRIT 385 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 IRK A ++G + P + I DNM L P+ Y ++G+E+ G G +LAI G Sbjct: 386 VIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAIKSGQVTEE 445 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 +PGE T+DP FGL A+WI +++A+ GYTVV S ++ATHL +I +AA++ GRQ Sbjct: 446 VPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILGRQN 505 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 Q ++D + +E P + +D+ L + KVLQ LL E+V IR+ I ETLA+ A Sbjct: 506 VQMIIDALRKEYPAVVDDVTQK-CPLGKIQKVLQGLLREQVSIRNTVAIFETLADFAS-T 563 Query: 569 SDPH---ELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG------ 619 SD L VR LGR I Q+ ++ +HV+ LD+ LE L + + Sbjct: 564 SDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLETFLSEKIALTVDSLSILT 623 Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679 L ++L + G PVLL +R + ++ V+S E+S Sbjct: 624 LSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDTIRSAMWNLFFSDRIEIAVMSYKEVST 683 Query: 680 NRHIRMTATI 689 + I + Sbjct: 684 DMRIETVGVV 693 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 214/689 (31%), Positives = 369/689 (53%), Gaps = 34/689 (4%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 K+ + L + + + MM++PLP ++D++ NI+ ++++L+++++ + LE Sbjct: 8 FKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELT 67 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FPTILL TTL+RL+L+V++TR+IL+ AG ++ +FG+F+VGGN +G+V+F I Sbjct: 68 SFPTILLITTLMRLSLSVSTTRLILLH-----HDAGDIIYSFGNFVVGGNIVVGLVIFTI 122 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 + I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK RS V +E+ Sbjct: 123 ITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQKES 182 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 FYGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q M A +++L++GD LV Sbjct: 183 QFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDALV 242 Query: 253 AQIPALVISTAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 AQIPAL+IS AGV+VTRV ++++ +V Q+ N L+SAA++ ++ ++PG Sbjct: 243 AQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGF 302 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 P LVFL LLG+AW ++ + + +A D+ ++ Sbjct: 303 PALVFLFLAVCLLGIAWKLQKK-----------RTFGTGNNKDAMGADLSNSQNISPGAE 351 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 ++ + ++ +I +R F +E G P + + + A +L + E Sbjct: 352 PLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQ--ESI 409 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 D + G A + + ++ A + G V + Sbjct: 410 YKDTLIDDTVYFEAGHAEISFEFVQEK-LSTNSIVYKTNKTNQQLAHLTGMDVYATTNDK 468 Query: 489 ATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 T L L+ +A E G QE + L+D + ++ +L ++L + L+ + +LQ L++E Sbjct: 469 ITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRLVEE 527 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 V IRD+RTI ETL + + D L VR+AL R I ++ ++V + + +E Sbjct: 528 NVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIE 587 Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 L ++++ + P ++++ + ++ V+L +R + + + Sbjct: 588 NELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNG----VILTALDIRRYVKKMI 643 Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGG 691 S P + VLS E+ +N +++ T+ Sbjct: 644 EGSFPSVPVLSFQEVGNNIELKVLGTVND 672 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 231/673 (34%), Positives = 381/673 (56%), Gaps = 17/673 (2%) Query: 21 ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80 + + ++ IL ++ +P+PA +LD+L NI+ ++++LL+ +++R L+F+ P++LL Sbjct: 13 DVFFAVGVIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVLLL 72 Query: 81 TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140 TL RL LN+ASTR+IL +G+ AGKV+ A G ++V GN+ IG+V+F ILV++ F+V Sbjct: 73 ATLFRLGLNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQFLV 127 Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200 +T GA R+AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+MDG Sbjct: 128 VTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAMDG 187 Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260 A+KFV+GDAIA I+I++INI+GGL +GV Q G+ A YTL T+GDG+V QIP+L+I Sbjct: 188 ATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSLII 247 Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 + G+I+TR +T ++ +Q+ Q+ ++P + L A V+ +PG+P+L +L Sbjct: 248 AVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGITF 307 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 ++ ++Q E + E T E L + ++ P + ++ Sbjct: 308 ALFGYFAHKKKQLKLIEKTFRE-------FENTKKTSTQESLLQVAFSSQIWPQI-LAEE 359 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 E+ + + +F + G P + ++ L+ Y I + +E SG +P + + I Sbjct: 360 TEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMMVI 419 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 +P G A V+PA+GLNA+W+++ + + G TVVE +V+ TH+ + H+ Sbjct: 420 DPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKSHS 479 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 AE RQ QL+ + L +++P + + + ++ +L+ EKV + + I E Sbjct: 480 AEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIFEV 539 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA----LQG 616 LA+ A + D LT VR L +T +++I + LER LL + Sbjct: 540 LADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVITK 599 Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 G + P D L+ Q + + LGA PVLLVN +R L + L R++P L V+S E Sbjct: 600 GLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISVNE 659 Query: 677 LSDNRHIRMTATI 689 + + + I Sbjct: 660 VPHHIKLNSLGVI 672 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 299/692 (43%), Positives = 461/692 (66%), Gaps = 4/692 (0%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 + N++ + + L P LIL IL +++LPLP F+LDL FTFNI SI++L+ Sbjct: 7 IKNISLLFNYFKKIIYKNLNSLFFPFLILSILCLLILPLPTFVLDLFFTFNIIFSIIILI 66 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 V++F + L+F++FPTILLF+TL RL+LN++STRIIL+ GHTG+ +AG V+E+FG FL+ Sbjct: 67 VSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLNGHTGSCSAGHVIESFGFFLIR 126 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD MPGKQMAIDADLN+GLI E + Sbjct: 127 GNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQ 186 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N++GGLL+G++Q+ MS+ A + Sbjct: 187 AKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIK 246 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVL 299 Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++GE+++ Q+F+N V+ S+ + Sbjct: 247 IYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIF 306 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359 GL+PGMPN +FL F+ L+W+I R + + + ++ +WND++ Sbjct: 307 CFFGLIPGMPNFIFLFFSVLFFILSWYINYR-KNINKNFSKILKFKKRKKIDISWNDIEF 365 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 ED L +E+ + ++ L+ +++ +RK AQ+ GFL P ++I N L +Y+ Sbjct: 366 EDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYK 425 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 I +KGVE+ SG + + L IN + G D F WI +K+ + Sbjct: 426 IFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKI 485 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 ++++ ++ + N +I + LFG QE QQLLDR++Q PKL + L+P ++++ T Sbjct: 486 VFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQN 545 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPI-QSDPHELTAVVRVALGRAITQQWFPGKDEVH 598 +LQNLL + + I+D+RTI+ETL +++ +++ ELT ++R+AL ITQ++F ++ Sbjct: 546 ILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYIN 605 Query: 599 VIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 VIGL T E +LL+ + +EP +++L+ +T+ A+ Q+ P VLLVN +R L Sbjct: 606 VIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVL 665 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LS F L VLS E+S+NR I++T I Sbjct: 666 LSNFFLNCNIILPVLSFSEISENRVIKITQFI 697 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 238/685 (34%), Positives = 375/685 (54%), Gaps = 16/685 (2%) Query: 21 ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80 + I++L I+ MM+LP+P+ +LD+ + +LSI++ V +F R L+F+AFPT+LL Sbjct: 16 TVFFVIMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFSAFPTVLLA 75 Query: 81 TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140 + +LRL+LNV+ST++I+ +GH G AAG V+E F +F++GG+ +G+VVF++L+I+NF+V Sbjct: 76 SLMLRLSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLVLLIVNFIV 135 Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200 ITKGA R+AEVGARF LDGMPGKQ+AIDAD++AG I EAK+RR E F+GS+DG Sbjct: 136 ITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFGSLDG 195 Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260 ASKFV+GDA+AG+LI +N++ GL++G+ H M +G A +Y++LT+GDGLV QIPA++I Sbjct: 196 ASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIPAVII 255 Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 S AA +++ + +D+ + Q +P+ + ++ L L+PG+P + F L L Sbjct: 256 SIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLGAMVL 315 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 G A ++ + +P A+ + EAT D+ D + + L+ + Sbjct: 316 GGAALYLYRKTPDSPEGEDK-PAAQTDRPREATMGDILDVDEIHVTFSTDLVSSILDAAG 374 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G L RI+S+R A E G + P + + D+ L A Y I + GVE G YP R L + Sbjct: 375 G-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQLYPDRILLL 433 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 P +P +G A WIE + +++ + G T V ++ V+ATHL ++ + Sbjct: 434 LPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHLLEVVKGNL 493 Query: 501 AELFGRQEAQQLLDRVA--------QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 A L + ++L+ + + L E+L+P VT TL +L+ LL+E+V IR Sbjct: 494 ARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLLLEERVSIR 553 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612 ++ ILE +AE I S + VR L I + +I L E++ Sbjct: 554 NLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQEWEQIFAA 613 Query: 613 AL------QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 L P L +L+ E + + G P ++ + R LS L Sbjct: 614 NSIGREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFLSTVLASKG 673 Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691 Q+ VLS EL + + Sbjct: 674 LQVPVLSFEELGKTNRPSLVGVVSA 698 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 234/690 (33%), Positives = 377/690 (54%), Gaps = 33/690 (4%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 Q + G +++ I+ MM++PLP ++D+L NI +S +++++AM+ + L F+ FP++ Sbjct: 17 QRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSV 76 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TT+ RLAL++++TR IL++ AG +VEAFG+F+VGGN A+G+V+F+IL ++N Sbjct: 77 LLLTTMFRLALSISTTRQILLQ-----QDAGHIVEAFGNFVVGGNLAVGLVIFLILTVVN 131 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI +A++RR + +E+ +G+ Sbjct: 132 FLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQLFGA 191 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA KFV+GDAIAG++I+ IN++GG +GVLQ+GM G A Y++LTIGDGL+AQIPA Sbjct: 192 MDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIAQIPA 251 Query: 258 LVISTAAGVIVTRVSTDQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 L+IS AG+I+TRVS D ++G ++ QL S P ++SAA + L+PGMP V Sbjct: 252 LLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGMPTAV 311 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT-WNDVQLEDSLGMEVGYRL 371 F++ +A LG + R ++ ++ + ++ E + D++ + + Sbjct: 312 FVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRFNPTRAYLLQFS 371 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 ++ + L+ IR +R + GF P I + L +R + + + + Sbjct: 372 QEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFCVYEIPLVTAT 431 Query: 432 AYPGRW--------LAINPGTAAGTL-PGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 + + + G + G + PG+A D + W+ Q + Sbjct: 432 FAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCWLPPQH-PLLQQEDRRCW 487 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 A ++ + I Q A+ G QE++ +L+ + E P+L ++L ++ L+ VLQ Sbjct: 488 NAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQEL-QRIMPLSRFAAVLQ 546 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 L E++P+R +RTI ETL EH + D LT VR+AL I Q+ ++V L Sbjct: 547 RLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNG-LNVWLL 605 Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 E LL +L+ L LL Q + A + ++LV LR Sbjct: 606 TPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYD--NHHALILVAQDLRSP 663 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 L L+ + VLS EL+ N I + Sbjct: 664 LRALLKDEFHAVPVLSFAELTSNVAINVLG 693 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 216/665 (32%), Positives = 365/665 (54%), Gaps = 26/665 (3%) Query: 33 SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92 SMMV+P+P +D L FN+ L++++L+ A++ L+F++ P ++L +T+ RLAL VA+ Sbjct: 29 SMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVFRLALTVAT 88 Query: 93 TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152 TR+IL EG AG ++ FG F++ GN +G V+F+++ ++ FMV+ KGA R+AEV Sbjct: 89 TRLILAEGE-----AGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVA 143 Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212 ARF LD +PGKQMAIDA+L G I DE+++RR+ + +E+ YG+MDGA KFV+GD+IAG Sbjct: 144 ARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAG 203 Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV- 271 ++++ IN++GG+ +G+L GMS YTLLTIGD L++QIPAL++S A +VTRV Sbjct: 204 LVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGDALISQIPALLLSITAATMVTRVT 263 Query: 272 -STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330 ++ ++GE + NQL ++ + L+A VL +G VPG P VF + A ++ Sbjct: 264 GASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVKGDV 323 Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390 + V AE+ T N + +G+ + L +D EL I I Sbjct: 324 LDADKVDATTVTPAESQTP-----NVAAQPNPIGVFLAPSLTNAID---QVELRQHIARI 375 Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450 + + ++G + P + + + L +++RI ++GV + P + L++ Sbjct: 376 SQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPAQ-LSLADDLKKIESS 434 Query: 451 GEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509 G DP + IW+E + + + G S ++A ++ ++ HA L G QE Sbjct: 435 GIPFRHDPE--THRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLTCHAPRLVGIQET 492 Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569 +QLL R+ QE L ++++ + + VL+ LL E +PIR+ R +LE LAE + + Sbjct: 493 RQLLGRMEQEYSDLVKEVLRTT-PIPRIADVLRRLLGEGIPIRNTRLVLEALAEWSEREQ 551 Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGL 624 + LT VR + R I ++ + ++ E ++ A++ LE Sbjct: 552 NVALLTEHVRSGMKRQICHRY-GRHGVLPAFVMERETEDVVRCAVRETAAGPYLALEDRQ 610 Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 ++ LL+Q ++ S P++L + +R + FL R+ +L VLS +L+ + I+ Sbjct: 611 SEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSYQDLASDFKIQ 670 Query: 685 MTATI 689 +I Sbjct: 671 PVGSI 675 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 218/695 (31%), Positives = 374/695 (53%), Gaps = 37/695 (5%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L +++L++ M+++PLP +++D L NI ++I++ + + + +R L F FP +LL T Sbjct: 15 LIVLSVMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMTFPALLLIT 74 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLAL+++++R+IL++ A AG+++ +FG F++G N +G VVF I+ I+ F+VI Sbjct: 75 TLFRLALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIVTIVQFLVI 129 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+ R+AEV ARF LDGMPGKQM+IDADL +G+I +E + RR E+ QE+ YGS DGA Sbjct: 130 TKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQLYGSFDGA 189 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 KF++GDAIAGI+I+ +N++GG+ VG+ Q G+S+ A +YTLLTIGDGLVAQIPAL+IS Sbjct: 190 MKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVAQIPALLIS 249 Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 +AG IVTRV + ++G ++N+L + +L++A + +G +PG P VFL+ + L Sbjct: 250 ISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPVFLILSVML 309 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL----GMEVGYRLIPMVD 376 ++ + + + + E K +N+ A + + G EV L+ Sbjct: 310 G--VYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVDNSLLTENI 367 Query: 377 FQQDGELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 E L I + ++K+F + G L P + I + + + Sbjct: 368 TLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSDKIDDDKII 427 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 IL+ V+ + + NP +L WIE + + GY Sbjct: 428 ILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERDDESKLAPLGY 487 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 + + + LI+ + E G QE + +LD++ + P+L ++ V++ ++ Sbjct: 488 KAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECY-RQVSIQRIND 546 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VLQ L+ EK+PIR+++TI+ L + + DP LT +R L R I+ +F + + Sbjct: 547 VLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISY-FFSTDGKFNA 605 Query: 600 IGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 I L +E ++ ++ LEP D ++ + + + + + L + + Sbjct: 606 IILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYI-QDYIFLTSIDI 664 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 R + + + PQ+ VLS E++ + I + +I Sbjct: 665 RRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 222/680 (32%), Positives = 380/680 (55%), Gaps = 20/680 (2%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L +L+++I++M+++PLP +++D L NI L+I+V + + + +R L F+ FP++LL T Sbjct: 15 LIILVLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLIT 74 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLAL+++++R+IL++ A AGK++ FG F++G + A+G V+F I+ ++ F+VI Sbjct: 75 TLFRLALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVI 129 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+ R+AEV ARF LDGMPGKQM+IDADL AG+I AK+RRS + +E+ YGS DGA Sbjct: 130 TKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQLYGSFDGA 189 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 KF++GDAIAGI+I+ +N++GG+ VG+ QHGMS+ A +YT+LTIGDGLV+QIPAL+IS Sbjct: 190 MKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLIS 249 Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 +AG IVTRV+ D ++G +++Q+F NP V+++++A+ +G++PG P VF L L Sbjct: 250 ISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTL 309 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV----- 375 L ++ + E++ ++ + + + +P++ Sbjct: 310 TALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFAE 369 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 + ++ G I IR +F + G P + R + +L+ +L+ V S + Y Sbjct: 370 NKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFD 429 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTVVATHLNH 494 + + L G V ++ I W++ + E + A L+ Sbjct: 430 KVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQ 488 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 + + E+FG QE + +LD+ P L +++ VT+ + +VLQ LL E + +R++ Sbjct: 489 ALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGENISVRNL 547 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 + I+E+LA AP + D L VR +L R I + E+ V+ L +E + + + Sbjct: 548 KLIMESLALWAPREKDVITLVEHVRASLSRYICSKIAV-SGEIKVVMLSGYIEDAIRKGI 606 Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 + G ++ ++D ++ AL VLLV+ +R + R + + Sbjct: 607 RQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSI 666 Query: 670 VVLSNLELSDNRHIRMTATI 689 +V+S E+ + I + TI Sbjct: 667 LVISYAEIDEAYTINVLKTI 686 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 214/654 (32%), Positives = 357/654 (54%), Gaps = 18/654 (2%) Query: 45 DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGA 104 D+L FN+ +I++L+VA++ L+F++ P ++L +T+ RLAL +A+TR+IL EG Sbjct: 41 DMLIGFNLGFAILLLMVALYLSTPLDFSSLPGVILISTVFRLALTIATTRLILAEGD--- 97 Query: 105 AAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQ 164 AG ++ FG F++ GN A+GIV+F+I+ ++ FMV+ KGA R+AEV ARF LD +PGKQ Sbjct: 98 --AGSIIHTFGDFVISGNIAVGIVIFLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQ 155 Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224 MAIDA+L I + EA++RR+ + QE+ +G+MDGA KFV+GDAIAG++++ IN++GG+ Sbjct: 156 MAIDAELRNNHIDQHEARRRRAALEQESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGI 215 Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMV 282 +G+L MS+ A YTLLTIGD L++QIPAL++S A IVTRV+ + +G +V Sbjct: 216 SIGLLSKDMSLDAAMHHYTLLTIGDALISQIPALLLSITAATIVTRVNGPSKLKLGADIV 275 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK 342 +QL ++ + L+A VL L+G VPG P F++ ++ G + PA Sbjct: 276 SQLTASTQALRLAACVLLLMGFVPGFPLPPFVILAVLFAAASYVKVGAKGDEPAAKTGAN 335 Query: 343 MAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFL 401 + + Q + + + L P + D EL I + + ++G Sbjct: 336 VTASAPAPAQAQAQKQAAHAEALPIALFLAPNLTHSIDKDELEQSIARVSTSVSADLGIT 395 Query: 402 PPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV-DPAFG 460 P + R + +L +++RI + V + P + L +N A L G DP Sbjct: 396 VPRIPARIDQNLSKSQFRIDVDSVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPE-- 452 Query: 461 LNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEM 520 +WIE + G ++A L+ ++++A L G QE +QLL R+ QE Sbjct: 453 TARVWIEERHAAALKAAGIGHHRPVEILALRLHSTLTRYAQRLVGIQETRQLLARMEQEY 512 Query: 521 PKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRV 580 L ++++ T+ + +VL+ LLDE +PIR+ R +LE LAE + + + LT VR Sbjct: 513 ADLVKEVLRTA-TIPRIAEVLRRLLDEGIPIRNTRLLLEALAEWSEREQNAVLLTEYVRA 571 Query: 581 ALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEA 635 AL R I ++ V ++ E ++ +++ L+ +++LL+Q ++ Sbjct: 572 ALKRQICFRYANAHRVVAAFIIERETEEIVRVSVRETAVGPYLVLDDWQSEKLLSQFRQI 631 Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 S + PV+L + +R + FL R+ L VLS +L+ ++ ++ Sbjct: 632 HSTIAQSQSQPVILGSMDIRRFVRGFLTRNGLDLPVLSYQDLASEFTVQPIGSV 685 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 229/696 (32%), Positives = 372/696 (53%), Gaps = 29/696 (4%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 +++ + +++L ++MM++P+P F++D+L FN S+++L+ A++ +F++ Sbjct: 13 AASRRSDIVVAAVVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGALYISSPAQFSSL 72 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P+I+L TL RLAL + +TR+IL E A AG++V AFG F+VGG+ +G++VF+I+ Sbjct: 73 PSIILLGTLFRLALAITTTRLILTE-----ADAGQIVAAFGSFVVGGDVLVGLIVFLIIT 127 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I F+VITKGA R+AEVGARF LD MPGKQM+ID + +G I + EA+++R ++ +E+ F Sbjct: 128 IAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLERESQF 187 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV+GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y+LLT+GDGL++Q Sbjct: 188 YGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGDGLISQ 247 Query: 255 IPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 IPAL+++ AAG +VTRV + QD+ +++ QL ++ + L+AA+L GLVPG P + Sbjct: 248 IPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVPGFPLI 307 Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV-------------EATWNDVQ 358 VF LA+ R R+ E V +D+ Sbjct: 308 VFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHIAGNLPGAGSDLG 367 Query: 359 LEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418 + L + +G L + R S+ + +++G P + + L A + Sbjct: 368 MAHRLTLTMGEGLGERLPP---PLFAERTESLAEAILEDLGIRVPAIGRLTDARLATAEF 424 Query: 419 RILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP-AFGLNAIWIESALKEQAQIQ 477 RI +GV + G P +A + L P GL +WI+ + Sbjct: 425 RIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAAALDAA 484 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 G EA+ VV T + ++ ++A + QE + LL R+ LT++++ VV+ L Sbjct: 485 GVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVL-DVVSAQRL 543 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597 VL+ L++E VPI +MR IL+T+AE + L VR LGR I + V Sbjct: 544 SDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADSNRIV 603 Query: 598 HVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEML---GAPPVLLVNHAL 654 L P E L A++ G + +RL A E L ++ + +L + L Sbjct: 604 SAYLLTRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGAQSRAAILTSMDL 663 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R + L R Q+ VLS E++ ++ I Sbjct: 664 RRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYIA 699 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 216/692 (31%), Positives = 364/692 (52%), Gaps = 22/692 (3%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 K + L + +++PLP FILD++ F +++S+++ + A E + Sbjct: 7 FKIDSARTYFSIFLAASFVVALLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDELKS 66 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPT+LL + R+++NV++TR IL G+ AG V+E FG F++GGN IGIV+F +L Sbjct: 67 FPTMLLLIGIFRVSINVSTTRAILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFTVL 121 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 +I F+V GA R AEV ARF LD +PGKQM+IDADLN +I E +A+ +R ++ E + Sbjct: 122 IIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNMETE 180 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 FYG+MDGA KF++GD I GI+I+ +NI+ GL+VG++Q GMS G AA YT LT+GDG+V Sbjct: 181 FYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGIVN 240 Query: 254 QIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 QI +L+++ + G+IVTRV + V E + +L ++ V+ + +G+ +P L Sbjct: 241 QIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLPFL 300 Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVK------MAENNTVVEATWNDVQLEDSLGM 365 F L ++ L + R +K + + E VE ++ + + + Sbjct: 301 PFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKYPIIV 360 Query: 366 EVGYRLIPMVDFQQDGELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMK 423 E+G L +V + +GE ++ +RK ++G P ++ +DN +P RY I +K Sbjct: 361 ELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIRIK 420 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 G + G G LA+ L E DP FG + WI + + AQ++GY V+E Sbjct: 421 GAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQVLE 480 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 +++ THL+ ++ ++ EL RQ + L++ + + L E++ + L+ + V++ Sbjct: 481 PLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVIKQ 540 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDP-HELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E + IRD+ TI+E + + I + +T+ VR + + I + +++ Sbjct: 541 LLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAALF 600 Query: 603 DTPLE---RLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH-ALRPL 657 +E ++ + QG + L R++ Q Q + ++G PVLL R Sbjct: 601 SDSIELDADVVNNSYQGYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFRFA 660 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + R L R + VL EL+ + A I Sbjct: 661 IVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 17/682 (2%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L ++LLI+ MV+P+ A +LDL +IA + ++L++A ++ +F AFP +LL + Sbjct: 16 LIITGVLLLIVLSMVIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVS 75 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 L+RL+LN++STR+IL G GA AAG V+EAF F+ GG+ +G+ VF ++ ++NFMVI Sbjct: 76 LLIRLSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVI 135 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+GR+AEV ARF LD +PGKQ+AID DLN+G I DEAK+RR+ +E F+GS+DGA Sbjct: 136 TKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGA 195 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFV+GDAIAG++I +IN+ GL GV+ HGM + A +Y+ LTIGDGLV+QIPAL+ S Sbjct: 196 SKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITS 255 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 AA ++++R + + + Q SN V + A + +GLVPGMP LVF A L Sbjct: 256 MAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLG 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-PMVDFQQD 380 AW+IR R+ K E + + DV D + +E+G LI +D + Sbjct: 316 VAAWFIRARQDKTRPEDAAPVESHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRG 375 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 L RI ++R A+ G + P V I D Q Y + ++GV G G P LA+ Sbjct: 376 --LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLAL 433 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 L GE +P +G A WI +++A I G TVV V++THL ++ + Sbjct: 434 GAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTNL 493 Query: 501 AELFGRQEAQQLL--------DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 L Q+++ + AQ + + +VP V L VL+ LL+E++ +R Sbjct: 494 PALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISVR 553 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL-- 610 ++ I + + E A + P + VR L IT+Q+ + ++ L E + Sbjct: 554 NLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIAR 612 Query: 611 --LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 ++ + G G P + RL Q LS G VL V R L+ L + Sbjct: 613 SEAESARAGNGAIPQIQKRLADALQATLSGLPP-GIEVVLAVPDHRRRLVRMMLSSAGIA 671 Query: 669 LVVLSNLELSDNRHIRMTATIG 690 VL E+ +R+ T+G Sbjct: 672 TPVLGLDEIDPGAQVRLRGTVG 693 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 234/692 (33%), Positives = 371/692 (53%), Gaps = 32/692 (4%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L LI++I+ M+V+PLP +LD L N+ ++VL+ A+ L + FP I+L T Sbjct: 20 LVVLCLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAIVLLT 79 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLAL+++S R+ILM GH AG++++ FG F++G N +G+V+F I+ I+ F+VI Sbjct: 80 TLFRLALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQFIVI 134 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGA R+AEV ARF LD MPGKQM+IDAD AG+I D + RRS + +E+ YGS DGA Sbjct: 135 TKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGSFDGA 194 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 KF++GDAIAGILI+ IN++GG+++G++++ +S + +Y++L++GD LV QIPAL+IS Sbjct: 195 MKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPALLIS 254 Query: 262 TAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 AG +VTR+S ++Q++G +V++L S+ V+L+S+ + L+GL+PG P VFL +A L Sbjct: 255 MGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTVSASL 314 Query: 321 LGLAWWIRGREQKAPAE------PKPVKMAENNTVVEATWNDVQLEDS--LGMEVGYRLI 372 W E+ A AE +P A +A + D+ LG + L Sbjct: 315 GFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDTAFLGHPLVVILP 374 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHI-------RDNMDLQPARYRILMKGV 425 S+ + E+G L P + + + AR R++++ Sbjct: 375 HACAHTPSLSPQNLATSLHARVFDEVGLLLPTIVVGFAAADAIVSDAQDDARQRVVIRIN 434 Query: 426 EIGSGDAYP---GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 ++ + Y G L + G + + G A W+ A Q Q G Sbjct: 435 DVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV-MAQPAQLQDIGIAFR 493 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 A + +I ++ +E FG QE + LLD + P+L +++ + + L ++L+ Sbjct: 494 SALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKEVY-RQIPVQKLCEILR 552 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E+V IR+M+ ILETLA + D LT VR+ALGR I+ + + VI L Sbjct: 553 RLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHRIA-RNGHMKVIVL 611 Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 E + Q ++ L P +A+ L+ + AL++ + VLL + +R Sbjct: 612 TPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVLLASMDVRRY 671 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + P L V+S E+SDN + + I Sbjct: 672 ARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 228/703 (32%), Positives = 386/703 (54%), Gaps = 39/703 (5%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 +++ + +L+ ++MM++P+P +++D L NIALS+++L+VA + ++EF+A P Sbjct: 14 ASKRTDVIIVAFMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALP 73 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++L +TL RL+L++ +TR+IL++G+ AG +V+AFG F++ G +G+VVF+I+ + Sbjct: 74 PLILLSTLFRLSLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITV 128 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 F+VITKGA R+AEV ARF LD MPGKQM+ID DL G I EA++RRS + +E+ + Sbjct: 129 AQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMF 188 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGA KFV+GDAIAG++I+ +N++GG+++G++Q GM AA Y+LLT+GDGL+AQI Sbjct: 189 GAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQI 248 Query: 256 PALVISTAAGVIVTRVSTDQ---DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 PAL+IS AAG +VTRV++D D+ ++V QL ++ + L+A +L +G++PG P LV Sbjct: 249 PALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLV 308 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV-------QLEDSLG- 364 F+ A L G A+ + R+++A ++ E+ T+ E + ED+L Sbjct: 309 FVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAAEDALES 368 Query: 365 ----------MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414 + +G L Q L RI ++ +G P+ + + L Sbjct: 369 AERPRDSQVLLSIGTGLAEAAPLQ---PLRQRIEALCHDIRINLGVEVPLPEVYLDRSLP 425 Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALK 471 R+++ ++GV + G+ + G L + L T + P W Sbjct: 426 VDRFQVELEGVPVSEGE-FSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHA 484 Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531 ++ Q G + A V+ L+ + ++AA+ G QE + +L+++ + +L ++++ + Sbjct: 485 DRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVL-RI 543 Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591 + L + + L+ L+ E V IR R +LE++ E I+SD LT +R L R I+ Q+ Sbjct: 544 LPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYA 603 Query: 592 PGKDEVHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV 647 + L LE L L + L + +L Q + L V Sbjct: 604 DRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRR-LCDMLPEHDLTV 662 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 LLV+ LR + R + R QL VLS EL+ +++ T+ Sbjct: 663 LLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 223/664 (33%), Positives = 346/664 (52%), Gaps = 21/664 (3%) Query: 38 PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97 PLP ++D L NI LS+++L+V M+ +AFP++LLFTTLLRL+LN+AST+ IL Sbjct: 30 PLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSLNIASTKSIL 89 Query: 98 MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157 + A AG ++E+FG +VGGN +G+VVF+I+ + F+VI KG+ R+AEVGARF L Sbjct: 90 LH-----ADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTL 144 Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217 D MPGKQM+IDADL AG + +EA+KRR+ + E+ +G MDGA KFV+GDAIAG++I + Sbjct: 145 DAMPGKQMSIDADLRAGHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITL 204 Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-- 275 +NI+ G+++G+ H M+ G AA + +L+IGD +V+QIP+L+IS AAGV++TRVS ++ Sbjct: 205 VNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVSQIPSLLISVAAGVMITRVSDEEQA 264 Query: 276 ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE 331 +G ++V QL ++ M ++A+L LVPG P+ +F+ + + +R R Sbjct: 265 HKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTLRNRA 324 Query: 332 QKAPAEP-KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG-RIRS 389 ++ + + + S + VG RL + D L + Sbjct: 325 KEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQ 384 Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449 R A+ +G P + I LQP Y + + + G L + A Sbjct: 385 GRHALAEALGLPFPGIAIWKADALQPDSYEVRVHDIPGEPVAVPDGHLLIPDLPEALRAQ 444 Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509 EA P WI A Q T V+A H+ H++ + A G QE Sbjct: 445 AVEAAGLPNHPAP-HWIAPAHVAQDAALSATGQRVERVIADHVVHVLRRSAHLFVGLQET 503 Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569 Q +L+RV + P L + V + VL+ LL+E+VPIR+MR ILE+L P + Sbjct: 504 QWMLERVTTDYPGLVAE-AQKAVPAQRIADVLRRLLEEQVPIRNMRAILESLVVWGPKEK 562 Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624 D L VR LGR I Q G ++ I LD +E+ + QA++ L+P Sbjct: 563 DTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVRQAIKPTPAGNFLTLDPQQ 622 Query: 625 ADRLLAQTQEALS-RQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 + ++ + + + + ++ + +R + R + L L V S EL + Sbjct: 623 VEAIIMRLRGIMQGNPVETPSALAIVTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDL 682 Query: 684 RMTA 687 R Sbjct: 683 RPVG 686 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 214/678 (31%), Positives = 360/678 (53%), Gaps = 37/678 (5%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L +L++ I+ M+++PLPA+++D L NI ++++V + A + R L F+ FP +LL T Sbjct: 15 LLILVLVITIIFMIIIPLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVLLIT 74 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TL RLAL ++++R+IL + A AG+++ FG F++G N +G V+F I+ ++ F+VI Sbjct: 75 TLFRLALTISTSRLILTD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQFIVI 129 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+ R+AEV ARF LDGMPGKQM+IDADL G+I + A++RRS + +E+ YG+ DGA Sbjct: 130 TKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAFDGA 189 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 KF++GDAIA I++ +N +GG+ VG+ QH M + A ++TLLTIGDGLV QIPAL+IS Sbjct: 190 MKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPALLIS 249 Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 +AG+IVTRV+ D ++G ++ QL NP V+L++A + +G++PG P VF++ L Sbjct: 250 ISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVMLAMAL 309 Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 G +R R+ + P A + + + ++L + + +++ Sbjct: 310 -GTLLLMRQRQTRVVPLPAAADYAGG-------YPERIMPEALAVILQVSRANYARLEKE 361 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 +R +F + G P + + +++ + + Sbjct: 362 ----QLCERLRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNEIRADVFTLHFDML--- 414 Query: 441 NPGTAAGTLPGEATVDPAFGLN----AIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 +PG+ P L+ A+W +E+ G + A + ++ Sbjct: 415 -----RRVIPGDRPCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVML 469 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 + H E FG QE + LLD++ P L ++++ T+ + ++LQ LL E++ IR ++ Sbjct: 470 THHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHA-TVQRIAELLQRLLMERISIRHLKL 528 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616 I+E +A AP + D L VR AL R I Q+ + + VI L + +E L +L Sbjct: 529 IMEAMALWAPREKDVSALVEHVRCALARYICHQFA-ADNLLRVIMLSSEVEETLRDSLHT 587 Query: 617 GGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 L P +++ L+ AL + VLL +R + ++ L V Sbjct: 588 TSAGTFLNLGPQVSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEV 647 Query: 672 LSNLELSDNRHIRMTATI 689 LS EL+++ + + TI Sbjct: 648 LSFGELTESVTVNVIKTI 665 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 245/695 (35%), Positives = 375/695 (53%), Gaps = 44/695 (6%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + + I+ +M+LPLP I+D L NIA+ +LL+A++ + F++F Sbjct: 19 RRAGYSDVVLAFAAVTIIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSF 78 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RL+L++A TR IL+E + G +VE FG + GGN +G VVF+I+ Sbjct: 79 PSVLLLTTLFRLSLSIAITRSILLEAN-----GGHIVETFGSLVAGGNLVVGFVVFLIIT 133 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 ++ F+VI KGA R+AEV ARF LD MPGKQ++ID+DL AGLI +DEAK++R + E+ Sbjct: 134 VVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQL 193 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 +GS+DGA KFV+GDAIAGI+I++IN++GGL +GVLQ GM + A +Y++LTIGDGLV+Q Sbjct: 194 HGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQ 253 Query: 255 IPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 IPA++ + AAG++VTR + D+D +GE + Q+ P V+L++ + + VPG P L Sbjct: 254 IPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKL 313 Query: 312 VFLLFTAGLLGLAWWIRGRE----QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367 VFL+ + LLG A W ++A P+ + AE TV E +++ L +E+ Sbjct: 314 VFLMLSVVLLGFAAWRYRHHHPVLRRAFKVPEGERPAEEKTVNE---DEIAPPAPLQLEL 370 Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNM----DLQPARYRILMK 423 L + RI I ++ +E G PV ++ + D YR+ Sbjct: 371 APSLAAAF---GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAF 427 Query: 424 GVEIGSGDAYPGRWL--AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 G + G P A A LPG P G W A G + Sbjct: 428 GARLAFGRLSPNAQFRPARAGDANAPKLPG--FFPPLAGE---WTGQA--------GADI 474 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 + V+ H + + A G QEA L R+ ++ P L ++++ VV + VL Sbjct: 475 RDGLATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVL 533 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 + L++E VPIR++R E + + + D LT VRVAL R I ++ G+ + V+ Sbjct: 534 RRLVEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLL 593 Query: 602 LDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 + LE L Q+++ GG + P LA RL A+ + L+RQ G PVLL + +R Sbjct: 594 IHPELEDRLRQSVRVAGGATQLAISPELAGRLGAEVRSHLARQ-GEGIKPVLLCSLDVRR 652 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 L + L +L VLS EL+ + I + Sbjct: 653 HLRKLLEIDFFELPVLSYQELAPDLRIVQAGQVNA 687 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 224/703 (31%), Positives = 381/703 (54%), Gaps = 30/703 (4%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 + +L A L S + +++ ++IL+I+ MMV+P+ ILD+L NI++S+++++ A+ Sbjct: 1 MIEVLNRFARLASARSEVVGASLIILMIV-MMVIPMGPGILDVLLAINISVSVVLVISAV 59 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + L F++FP +LL TTL RL+L +++TR IL+EG AG +V+ FG F+VGGN Sbjct: 60 LIETPLAFSSFPALLLMTTLFRLSLTISTTRQILLEG-----DAGHIVQTFGEFVVGGNV 114 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 A+G+ +F+I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI + AK+ Sbjct: 115 AVGLTIFLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQ 174 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 RRS++ +E+ +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS A YT Sbjct: 175 RRSDLEKESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYT 234 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +L++GDGLVA IP+L++S AAG+IVTRV + + + M+ L N + + +S Sbjct: 235 ILSVGDGLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFC 294 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359 L VPGMP+ VFL +A LL ++I + KA + ++ ++ A+ +++ Sbjct: 295 FLFAFVPGMPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSD---MLSASGKSIKM 351 Query: 360 EDSLG----MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 +D L + RL ++ ++ R R + +++G L P+ ++ + Sbjct: 352 DDILHTNTFAPLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFV 411 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT---VDPAFGLNAIWIESALKE 472 Y + GV S R + + +PG D G + + K Sbjct: 412 EFY---VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKT 468 Query: 473 QAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVV 532 + T + + + L+ Q +LF E Q+ + + + + ++L V+ Sbjct: 469 LLDQHKLEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ERVL 527 Query: 533 TLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP 592 +T + +VLQ LL E V I++MR+IL +L E + DP + VR L I Q Sbjct: 528 PVTKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQH-T 586 Query: 593 GKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPV 647 + ++ V L E+L+ ++ + G ++ + L+ +E + P Sbjct: 587 HERKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLVGNYVPA 646 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 ++ + R + ++ SL + VLS+ E+S N I++ I Sbjct: 647 IVCSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 219/673 (32%), Positives = 375/673 (55%), Gaps = 28/673 (4%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 Q + ++L+ + MM+LPLP +++D+L T N+ S+++LL+A++ L+ + FP++LL Sbjct: 22 QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLL 81 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 TTL RL+L ++++R++L++ + AG +V+AFG F+VGGN +G+VVF I+ I+ F+ Sbjct: 82 ITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFI 136 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 VITKG R+AEV ARF LDGMPGKQM+ID DL AG+I D A+ R V QE+ F G+MD Sbjct: 137 VITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMD 196 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM A +Y++L+IGDGL QIP+L+ Sbjct: 197 GAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLL 256 Query: 260 ISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 IS +AG+IVTRV + Q++ ++ +Q+ P ++L+A VL LL L+PG P + F+ Sbjct: 257 ISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFS 316 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377 A L I R +K+ V+ E +++V + RL P + Sbjct: 317 ALLA--LPIILIRRKKSVVSANGVEAPEKDSMV-----------PGACPLILRLSPTL-- 361 Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437 +L+ I ++R ++ G P V+I + +P ++ E + P + Sbjct: 362 -HSADLIRDIDAMRWFLFEDTGVPLPEVNI--EVLPEPTEKLTVLLYQEPVFSLSIPAQA 418 Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 + G A + T+ G W+ + +AQ G V S ++ L ++ Sbjct: 419 DYLLIGADASVVGDSQTLPNGMGQ-ICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLL 477 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 +H E G QE + L++ + + +L ++L + + + + LQ L+ E+V IRD+R I Sbjct: 478 RHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRLVSERVSIRDLRLI 536 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 TL + AP + D LT VR+AL R I ++ P + ++ + +E L+ ++++ Sbjct: 537 FGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT 596 Query: 618 G-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 G L+ R Q + + + A ++ + R L + +L + +LS E Sbjct: 597 AMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQE 656 Query: 677 LSDNRHIRMTATI 689 L + I++ +I Sbjct: 657 LGEESLIQVVESI 669 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 222/681 (32%), Positives = 377/681 (55%), Gaps = 23/681 (3%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 ++ + + +++PLP F+LDL+ +A S++V + A + E +FP++LL + R Sbjct: 14 LIAVSFVIALIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMGIFR 73 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 +++N+++TR IL G G+V++ FG+F++G NF +GIV+F+IL++ F+V G+ Sbjct: 74 VSINISTTRAILTTGDP-----GQVIKQFGNFVIGSNFVVGIVIFIILIVFQFIV-ANGS 127 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R AEV ARF LD +PGKQMAIDADLN LI E EAK++R+ + E +FYG+MDGA KFV Sbjct: 128 SRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAGKFV 187 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GD + +L+ V+NIV GL+VG++Q G+S G AA YT LTIGDG+V+QI +L+++ +AG Sbjct: 188 KGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAMSAG 247 Query: 266 VIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 VIVTRV +D +V + +L N V+ +A+ L+G+ +P + F+ L + Sbjct: 248 VIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVLGII 307 Query: 324 AWWIR---GREQKAPAEPKPVKMAENNTVVEATWND----VQLEDSLGMEVGYRLIPMVD 376 + + ++++ E + + EA N + + + +E+G + +V Sbjct: 308 GYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVELGLNIAALVK 367 Query: 377 FQQDGELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYP 434 + +GE ++ +RK Q++G P ++ +DN QP +Y I +KGV + SG Sbjct: 368 QKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKA 427 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 G LA+ L E T DP FG + WI E AQ++ Y V+E +++ THL+ Sbjct: 428 GHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDV 487 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 ++ ++ EL RQ+ + L+D +A E L +++ + + + VL+ LL E + +RD+ Sbjct: 488 VLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDL 547 Query: 555 RTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--RLLL 611 TI+E + + I +D +TA VR + + I +Q +++ + L +E ++ Sbjct: 548 PTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIV 607 Query: 612 QALQGGGGLEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNH-ALRPLLSRFLRRSLPQ 668 G L L L + + ++ +++ ++ G PV+L R R L R Sbjct: 608 NTPYYGYALNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLD 667 Query: 669 LVVLSNLELSDNRHIRMTATI 689 + VLS ELS + A I Sbjct: 668 VPVLSISELSPETEVEQIALI 688 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 223/716 (31%), Positives = 366/716 (51%), Gaps = 45/716 (6%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 + +LK + L++ I+S+M+LPLP +DLL NI +S+ +L+V M+ Sbjct: 1 MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIA 60 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 +AFP++LLFTTL RL+LN+AST+ IL+ A AG ++E+FG +VGGN +G+VV Sbjct: 61 ALSAFPSLLLFTTLFRLSLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVV 115 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F I+ + F+VI KG+ R+AEVGARF LD +PGKQM+IDADL +GL+ +EA+K+R+ + Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 E+ +G MDGA KFV+GDAIAG++I +INIV G+ VGV HGMS G AA +++L++GD Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235 Query: 250 GLVAQIPALVISTAAGVIVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 +V+QIP+L++S AAGV++TRV+ + + +G+++ +QL S+ + +A +L Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQ-----KAPAEPKPVKMAENNTVVEATWNDVQL 359 VPG P +F+L A L + + + E + ++ + + + Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355 Query: 360 EDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418 VG R+ P + L + R + E+G P V + + L A + Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415 Query: 419 RILMKGVEIGSGDAYPGRWL------------AINPGTAAGTLPGEATVD-----PAFGL 461 +L+ V S + + A+ A + A G Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475 Query: 462 NAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMP 521 WI+ E A +V A ++A I HA G QE Q +LD++ + P Sbjct: 476 ATHWID----EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531 Query: 522 KLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVA 581 L +++ ++ T + VL+ LL+E++ IR++RTI+E+L + D LT VR Sbjct: 532 GLVAEVL-KILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGD 590 Query: 582 LGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEAL 636 L R + + G+ + + D E+ + QA++ L P A RL+ + Q + Sbjct: 591 LSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLV 650 Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 L+ + +R + R + R + L V S EL ++ +R + + Sbjct: 651 G--ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQ 704 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 228/571 (39%), Positives = 346/571 (60%), Gaps = 16/571 (2%) Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 + L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V Sbjct: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+TIGDG Sbjct: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 Query: 251 LVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310 LVAQIP+L++STAA +IVTRVS + D+ + NQL ++PSV+ + ++ +L +VPGMP+ Sbjct: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK----MAENNTVVEATWNDVQLEDSLGME 366 L FLLF+A L W + + A AE K ++ + + +W + L + + + Sbjct: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247 Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426 +GY+L+ +VD Q L RIR +R+ + G L P + IR+N L+P++Y I + G++ Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307 Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486 D + +A+ G + G DPA+G+ WI++A K +A GY V+++++ Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546 V+ATH+N ++ + +LF + QL +R++ P+L EDL + + L KV + LL Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426 Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606 E V +RD+ TI L + + D L A VR+AL R+IT + K E+ V L+ L Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485 Query: 607 ERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 E LL QA QGG + +P + ++ + + + + G PVLLV LRP Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 LL+R+ R P L VLS E+ D +++ Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMG 576 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 227/677 (33%), Positives = 391/677 (57%), Gaps = 16/677 (2%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L + +++ + M+++P+P+ +LD+LF FN+ S++VL+++++T+ EF++FP+++LF Sbjct: 4 LYTTLFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLMLFA 63 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINFMV 140 L L V+S R IL+ G+ GA A AFG ++G GN+ +G+V+FV+L+I+ +MV Sbjct: 64 VFFHLVLIVSSARAILVTGNPGALA-----TAFGKLIMGQGNWVVGLVIFVVLLIVQYMV 118 Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200 IT G RI+EV ARF LD MPG+QMAIDADL+AG I +EA+++R + +E+DF+G+MDG Sbjct: 119 ITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAMDG 178 Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260 AS+FVRG+ +A L V+N +GG++VG+L G + A Y + IG L I +L + Sbjct: 179 ASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGVALQIAISSLAL 237 Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 S +A ++V RVS++Q +GE++ ++L + P ++ + VL + L+PG+P L+ + L Sbjct: 238 SLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGVLL 297 Query: 321 LGLAWWIR-GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 + + E P + + ++ E + EA V + D++ +E GY L+P+ D Sbjct: 298 IWFGRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVGV-DAVELEFGYELLPLFDTTS 356 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 ++L I +RK ++E GF P + I DN+ L+P +YRI ++GV G G G LA Sbjct: 357 GQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLLLA 416 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 + G+ + G T +P F L+A WI + K +A+ G TVV+ T+V THL ++ Sbjct: 417 MGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLKSS 476 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 A+L RQ + ++D V + P + E+L V +L + V + LL E++P+RD+ + E Sbjct: 477 LADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRVFE 535 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 + + D E + R A + + + + VI L +ER L+++ Q G Sbjct: 536 LITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPGSE 595 Query: 620 LEPGLA----DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVLSN 674 + L+ +++ + ++A VL+V+ +R L L R+ L +L VLS Sbjct: 596 IGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVLSY 655 Query: 675 LELSDNRHIRMTATIGG 691 E+ D +++ + ++G Sbjct: 656 NEIMDAKYV-VVGSVGA 671 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 241/679 (35%), Positives = 378/679 (55%), Gaps = 17/679 (2%) Query: 24 GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83 I ++ I+ +MVLP+PA++LD+ T + ALSI++ +F ++ L+F++FP+ILL + + Sbjct: 16 LAIGLMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASLV 75 Query: 84 LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143 LRLALNV+ST++I+ EGHTG AAG V+E F F++GGN +G+VVF +LVI+NFMVITK Sbjct: 76 LRLALNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVITK 135 Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203 GAGR+AEVGARF LD MPGKQ+AID+DL G I +EAK RR +EA F GS+DGASK Sbjct: 136 GAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGASK 195 Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263 FV+GDAIAG+LI +N++ G+ GV+ H +S+ A +Y++LT+GDGLV+QIPA+++S A Sbjct: 196 FVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSVA 255 Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323 A +++++ + + + QL N + + + A +L + L+PG+P L F+ AG + Sbjct: 256 AALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAAV 315 Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383 A++ + + A + E+ D D + +EV L+ MV ++G Sbjct: 316 AYFTKKAADEKAASEET--KPEDAAPKAPKIGDSIYADEIHLEVAPDLVNMVLVGENG-F 372 Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443 RI IR+ A+E GF+ P + + DN L+ YR+ ++GV + SG PG+ LA+ Sbjct: 373 ESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIEE 432 Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 L GE +P + A W+ SA K++ VVE V+ATH+ +I + + + Sbjct: 433 NQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSLV 492 Query: 504 FGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 F R + LD + A + ++ +PG VT L VL+ LL E+VPIR++ Sbjct: 493 FTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNLF 552 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL---- 611 I+ET+AE P + +VR L I + + + +I L T E+ Sbjct: 553 LIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQLSTSWEQKFTEYEV 612 Query: 612 --QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 ++ L P + L+ Q L+ G + + R L L + Sbjct: 613 TNESGGSDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSSRRRRFLQTVLASKGIRN 672 Query: 670 VVLSNLELSDNRHIRMTAT 688 V++ E++ + Sbjct: 673 AVVAYEEINSKSKPYIIGV 691 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 216/671 (32%), Positives = 352/671 (52%), Gaps = 72/671 (10%) Query: 34 MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93 +M+LPLP ++D L NI LS+++L+V M+ ++ ++FP++LLFTTLLRL+LN+AST Sbjct: 30 LMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAST 89 Query: 94 RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153 + IL+ A AG ++E+FG +VGGN +G+VVF+I+ + F+VI KG+ R+AEVGA Sbjct: 90 KSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGA 144 Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213 RF LD MPGKQM+IDADL G + DEA+++R+ + E+ +G MDGA KFV+GDAIAG+ Sbjct: 145 RFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGL 204 Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273 +I ++NI+ G++VGV HGM+ G AA + +L++GD +V+QI +L+IS AAGV++TRV+ Sbjct: 205 VITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVAN 264 Query: 274 DQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--W 326 + +G + QL SN ++ ++ +L VPG P ++FLL A + + W Sbjct: 265 ENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTIW 324 Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLIPMVDFQQDGEL 383 + R+ + K + EA D L M + +L ++D + L Sbjct: 325 RKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLDPAR---L 381 Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443 I S R++ + +G P + I LQ +Y +L+ V + Sbjct: 382 DQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDVPETRAEL----------- 430 Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 E T D +++AL QA + A Sbjct: 431 --------ENTDD---------MQAALARQAISP------------------LHARAHLF 455 Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563 G QE Q +L++VA + P L + V + + VL+ LL+E++P+R++++ILE+L Sbjct: 456 VGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESLVV 514 Query: 564 HAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG----- 618 P + D LT VR LGR + G ++ + LD +E+L+ Q+++ Sbjct: 515 WGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGNFL 574 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 L P A++L+ Q + + P ++ + +R + R + L L V S EL Sbjct: 575 ALPPEQANQLVEQVERIVGDHA--QHPLAVVASMDVRRYVRRMIEARLTWLQVYSFQELG 632 Query: 679 DNRHIRMTATI 689 ++ + Sbjct: 633 SEVQLQPIGRV 643 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 230/688 (33%), Positives = 367/688 (53%), Gaps = 25/688 (3%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 LK+ + + + +L +++PLPA++LD N+A S+ +L+ A+ + L+ + Sbjct: 9 LKARNSSDVVLAVAMAAVLGALIIPLPAWLLDAGLAVNLAASVALLVAALRARDALKVTS 68 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPT+LLFTTL RLALNV+STR+ L EGH AG V++AFG F+V G++ +G VVF IL Sbjct: 69 FPTLLLFTTLFRLALNVSSTRLALAEGH-----AGDVIQAFGEFVVRGDYVVGAVVFAIL 123 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 ++ +V+TKGA R+AEV ARF LD MPGKQM+IDADL AG I + +A++RR ++ +E+ Sbjct: 124 TLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLERESQ 183 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 +G+MDGA KFV+GD IAG++I+ +N++GG ++GVLQ GM + AA ++ L+ IGDGLV+ Sbjct: 184 MFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGDGLVS 243 Query: 254 QIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310 Q+P+L I+ AAG++VTRV++ + +G ++ Q F + + A + L L+PGMP+ Sbjct: 244 QVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMPGMPH 303 Query: 311 LVFLLFTAGLLGLAWWIRGR-----EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365 + FLL GL GL + E+KA A V E+ + V + L + Sbjct: 304 VTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGAPPESAASPVGV-SPLTL 362 Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRILMKG 424 ++ L + + + + + +R + E+G P + +R L P YR+L+ Sbjct: 363 DMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVLVDE 422 Query: 425 VEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 V G G PG A+ P + EA +P+ G I + + + + Sbjct: 423 VPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQVPLR 482 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 +V+ H+ ++ AA+L G Q+ Q LL+ + + P L ++ + V L L VL+ Sbjct: 483 RPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTDVLR 541 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E V IRD+R ILE L + D L R AL R ++ ++ P ++ + Sbjct: 542 KLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLSHKFAP-TGPLYAYLV 599 Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 D +E +L G +P +L ++ + VLL +R L R Sbjct: 600 DPEVEEVLRGMGPRGLAPDPERVAEILEGVRQVATE-----GRAVLLTAPDVRRPLRRLC 654 Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIG 690 + P + VL+ EL IR + Sbjct: 655 EGAFPDVAVLTYGELDGALQIRPIGRLS 682 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 197/659 (29%), Positives = 335/659 (50%), Gaps = 17/659 (2%) Query: 36 VLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRI 95 +LPLP +DL+ T N++ SI++LL+++ ++F+ FP +LL TTL RL++++++TR+ Sbjct: 30 ILPLPPAAMDLMITLNVSASIIILLMSLQMHNPVQFSTFPALLLVTTLFRLSISISTTRL 89 Query: 96 ILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARF 155 IL+EG AG++VE FG +GGN A+G+V F+I+ ++ F+VITKGA R+AEVGARF Sbjct: 90 ILLEGD-----AGRIVETFGQVAMGGNLAVGLVTFLIITVVQFLVITKGADRVAEVGARF 144 Query: 156 VLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILI 215 LDGMPGKQM+IDAD+ AG + + +A+ R + +EA +G+MDGA KFV+GDAIAG++I Sbjct: 145 TLDGMPGKQMSIDADVRAGNMDQLDARHARQNLEREAKLFGAMDGAMKFVKGDAIAGLVI 204 Query: 216 MVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ 275 VIN+VGG+ +G+ Q G+ G A Y LLT+GDGLVAQIPAL+IS AAG +VTRV+ Sbjct: 205 TVINLVGGVAIGMAQRGVGFGEALSLYALLTVGDGLVAQIPALLISVAAGNMVTRVTNPN 264 Query: 276 --DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333 D+G ++ Q +N ++++ ++ L GLVPG P +F+ + + G W R+ + Sbjct: 265 GMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPGFPTWIFVSVGSAMTGGVIWTIRRQHR 324 Query: 334 APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKK 393 + + +++ ++ + V L + ++R Sbjct: 325 DVLSAQTDWSLRLD-LLQRQCAEIAMRTGAKEAVRLILPKEIYKLDVTAFFSAFEAVRIS 383 Query: 394 FAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEA 453 AQE G + + + P Y+I + G + L G Sbjct: 384 IAQEYGIPT-GYWLFEVDEGSPHSYQIYVNQELADCGIFRADSLFVKAHTSYLDAL-GIP 441 Query: 454 TVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLL 513 + + + +++ + + HL + + + Q +L Sbjct: 442 WLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQLLMHLKRVAVERLDVMASLQNITAIL 501 Query: 514 DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHE 573 + V P L DL + + V++NLL E++P+ ILE + + + + DP Sbjct: 502 NEVQTNNPALVGDL-REAASNNQIAGVIRNLLRERIPVTSRVRILEGILKWSQKRPDPGY 560 Query: 574 LTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRL 628 L VR+ + IT+++ + V+ + +E L+ + ++ LEP ++ + Sbjct: 561 LAQKVRIEIADFITKRFA-ADGFLPVVVVSPTVESLMREGMRNTEEGNFLILEPSISAYI 619 Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 Q ++ + G PVL++ +R + L L VL+ E++ I Sbjct: 620 AKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNILYEHGIHLPVLAYQEITPETVIYPVG 678 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 229/684 (33%), Positives = 363/684 (53%), Gaps = 21/684 (3%) Query: 17 TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76 + LA +L +L +++LP+P+F+LDL + S ++L ++ + +E ++FP+ Sbjct: 17 ARHADLAVGAGMLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFPS 76 Query: 77 ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136 +LL TTLLRLAL +AST++IL+ H AG+++ AFG +VGGN A+G+VVF++L I Sbjct: 77 LLLVTTLLRLALAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSAI 131 Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196 F+V+ KGA R+AEV ARF LDG+PG+QM+IDADL GLIG EA + R E+ +E FYG Sbjct: 132 QFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFYG 191 Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256 S+DGA KFV+GDAIAG+++ ++NI GGL VG+ Q GMS+ A +YT+LT+GDGLV+QIP Sbjct: 192 SLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQIP 251 Query: 257 ALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 +L++S +AG++VTRVS+ ++G + QL ++P M+++ L +PG P++ F Sbjct: 252 SLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQF 311 Query: 314 LLFTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370 +L L+GLA + + A P + V+ +DV+L S + V Sbjct: 312 VLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRVRLG 371 Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430 + EL ++ +R+ +G P + + + L RY + + V G Sbjct: 372 -SAACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVDIDDVPFSGG 430 Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 G L ++ T T+ G P ++W+ + A+ ++ Sbjct: 431 TLLAGHVL-VSGDTERVTMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMKSSANGLLCD 488 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 HL + + A G QE + LL+ V E +L + VVT + VL++LL+++V Sbjct: 489 HLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRVS 547 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERL 609 IR+MR ILE + + + + R+AL + + + EVH L+ E Sbjct: 548 IRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEAE 607 Query: 610 LLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV--LLVNHALRPLLSRFLRRSLP 667 L + G EP L A E+L R V ++ LRP L R LR Sbjct: 608 LEAQIDLGPDGEPRCV--LDADRLESLQRGFAARNDVVRLVVTTAVLRPHLERVLRTLGM 665 Query: 668 QLVVLSNLELS-DNRHIRMTATIG 690 + VL+ E+ D +R+ AT+ Sbjct: 666 RTDVLAMEEIPLDEYRVRVIATLA 689 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 235/702 (33%), Positives = 368/702 (52%), Gaps = 39/702 (5%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 L ++ L I+ ++++ +LPLP LD + + N+A S+++L V+ + + F+ Sbjct: 40 RLGASPRADLFLAGFIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFS 99 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FP +LLFTTL RLALN+AS ++IL+ + AG V++AFG +VG N +G VVF++ Sbjct: 100 SFPALLLFTTLFRLALNIASCKLILLHAN-----AGHVIDAFGRLVVGNNVVVGGVVFLV 154 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 + ++ F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG+I DEA++RR + QE+ Sbjct: 155 IAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQES 214 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 +G+MDGA KFV+GDAIAG++I INIV G+ VG L HGM +G A + Y +LT+GDG+ Sbjct: 215 QMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMA 274 Query: 253 AQIPALVISTAAGVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 +QIP+L++S AAG++ TRV+T +GEQ+ QL ++P +L++A VL +VPG Sbjct: 275 SQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGF 334 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 P F L GL A R+ AP+ + V + + Sbjct: 335 PKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA 394 Query: 369 YRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427 L + + +L + S + + ++G + P + + D+ YRI ++ V Sbjct: 395 VSLSDDLRTTLNLAQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIYLQDVLA 454 Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQIQGYTVVE 483 G PG L LP A P AFG A+WI+ + Sbjct: 455 AHGALKPGWLLW----DGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKWLT 506 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 + +A H+ ++ QHA EL G QE Q L+ V +E P+L +L +V L + +VL+ Sbjct: 507 SEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELT-RLVPLQRVTEVLRR 565 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E+VPIR++R I E+L AP + D L +VRV L R IT + ++ V+ Sbjct: 566 LLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVLF 625 Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE---------MLGAP-PV 647 + L+ + A+ L + + Q + + + GAP Sbjct: 626 EQNLQERIESAVMRTKQGNFLALSSAIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPRLA 685 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++V R + L+ LP+L VLS E+ ++ + + Sbjct: 686 VMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWV 727 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 203/692 (29%), Positives = 341/692 (49%), Gaps = 66/692 (9%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 LP + + +I+ MMVLP+P ++D + FN+A + +VL+ ++ + L Sbjct: 5 LPPVAAIAKRTDILFAGFFAVIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVL 64 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 + + FP ++L TL RLAL +++TR++L EG AG+++ AFG F+V GN +G+++ Sbjct: 65 DISTFPAVILIGTLFRLALTISTTRLVLAEG-----DAGEIISAFGSFVVAGNVVVGLIM 119 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL +G I + A+KRRS++ Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +E+ F+G+MDGA +FV+GDAIAG++I+ +N++GGL +G+ Q G+S AA+ Y+LL+IGD Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GLV+QIP+++++ AAG +VTRVS D+ ++G ++ QL P + ++AA+ GL+PG Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299 Query: 308 MPNLVFLLFTAGL--LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365 P V GL L L + R Q + + N A + + D + Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGDPIVA 359 Query: 366 EVGYRLIPMVDFQQ-DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 + + ++ G L RI + A+ +G V + + I ++ Sbjct: 360 TLSAATMSRLEANNLGGHLDARI----RVAARAVGVAITVPTFNADPRMGEDMIHIQVEN 415 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 V A + Sbjct: 416 VP-----------------------------------------------AGLISCKADRP 428 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 + ++A + ++ +H +F +A Q L + + KL D V V+ L V++ L Sbjct: 429 AELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRL 487 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 LD V + R +LET+ + P + DP +L R AL R I + + V+ Sbjct: 488 LDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSP 547 Query: 605 PLERLLLQALQGGGGLE----PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 ER + E RL +T++AL G PV+++ LR L Sbjct: 548 EWERFVRSYSDASDKTEKEEISEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQA 607 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 + R ++ V++ E+ + + +G + Sbjct: 608 LMIRHNCRVPVVAIEEIDHDITSDVVGMVGVQ 639 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 206/681 (30%), Positives = 335/681 (49%), Gaps = 71/681 (10%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 L + ++ I+++++LPLPA ++D+L NIA+ +++LL + + L+F+ FPT+LL Sbjct: 17 ADLMLIVAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTLHITKPLDFSTFPTVLL 76 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 +TL RL+L++A+TR+IL A G +++ FG + GGN +G+VVF+I+ ++ F+ Sbjct: 77 LSTLFRLSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNLIVGLVVFLIVTVVQFI 131 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 VI+KGA R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++RR + E+ +GS+D Sbjct: 132 VISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLELESKLHGSLD 191 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GA KFV+GDAIA I+I++IN+VGGL VGV HGM G A + +++LTIGDGLVAQIPAL Sbjct: 192 GAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGDGLVAQIPALF 251 Query: 260 ISTAAGVIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316 + AAG++VTR S D +G +V Q+ S P V+ +A + L+ L+PG P VF+ Sbjct: 252 SAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIPGFPAAVFIGI 311 Query: 317 TAGLLGLAWWIRGREQK---APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373 L A W A + A + L +E+ + Sbjct: 312 AFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAPRPVRPLVLEIAAPALD 371 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 ++ L R + + +G P + + + G+ Sbjct: 372 AAQAER---LRARFVLVIEAVQARLGLPMPAGEVTTRL---------------LPEGERP 413 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 A +G + G +A + Sbjct: 414 RWTLSAYEAPVGSGEVDGPF-------------------------------EEAIAPAIE 442 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 L+ ++AA G QE +L+R+ + P L +++V V+ + +VL+ L +E+V +R+ Sbjct: 443 ALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVV-RAVSSPRIAEVLRLLAEEEVCLRN 501 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 +R +LE +AE + + + RVAL R I V+ + LER Sbjct: 502 LRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHM-ADGRFPVLVVGGRLERFFRDN 560 Query: 614 LQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 LQ G + P A L+ + ++ ++ + LR L + L Sbjct: 561 LQTVEGVAHLAMPPDQARTLIGMIRSETAKCGAR----AIITAYDLRRPLRQLTAGDLFG 616 Query: 669 LVVLSNLELSDNRHIRMTATI 689 L +L EL+ + + T+ Sbjct: 617 LPILCYNELTPALPLDVVGTL 637 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 203/690 (29%), Positives = 334/690 (48%), Gaps = 67/690 (9%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 +R A Q + + +++M+VLPLP +LD+L FN++ + +VL+ + + Sbjct: 2 KVRSSAIAMLAQRTDMLLAVFFASVVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLK 61 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 LE + FP ++L TL RLAL ++STR++L + A AG+++ AFG F+V GN +G Sbjct: 62 SVLEISTFPAVILIGTLFRLALTISSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVG 116 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 +++F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL G I + A+KRRS Sbjct: 117 LIIFLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRS 176 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 + QE+ F+G+MDGA +FV+GDA+AG++I+ +N++GGL +G+ Q G+S AA YTLL+ Sbjct: 177 RLEQESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLS 236 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 IGDGLV+QIP+++++ +AG++VTRVS D + +G + +LF P + ++AA+ G Sbjct: 237 IGDGLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGF 296 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364 VPG P V L GLA+ + R A + + + D + Sbjct: 297 VPGFPTGVLGAIGLCLAGLAFMVHRRRAGPAAAGSA---NAVESANSYPLDRTKYGDPVI 353 Query: 365 MEVGYRLIPMVDFQQDGELLG-RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 V + ++ + GE+L RIR A+ +G V + + + ++ Sbjct: 354 ATVAVETLARLEAMRLGEMLDGRIRMA----ARAVGVSVTVPTFNADPRMAEDLIHLQVE 409 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 V A + Sbjct: 410 NVP-----------------------------------------------AGLVSCGPER 422 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 + +A + ++ +H LF +A Q L + + KL D V V L V++ Sbjct: 423 TAEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAID-VATQVPLMLTVAVVRR 481 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LLD V + R +LE + HA P L + R AL + I + + + L Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540 Query: 604 TPLERLLLQALQGGGGLEPGLADR---LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 + + G + +A+R L + ++AL G P+++V R L Sbjct: 541 AEWDHFIRSYDAAGATEKIEIAERLRLLAEKARQALEDANERGYDPIIIVPGEWRLLTQT 600 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + ++ VL+ E+ + I IG Sbjct: 601 LMIHHNCRIPVLAAEEIDRDITIETIGEIG 630 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 217/676 (32%), Positives = 338/676 (50%), Gaps = 42/676 (6%) Query: 26 ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85 I +L +L +++ PLP LD++ N+ +S+++L ++++ L + FPT+LL TL R Sbjct: 24 IAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTFPTLLLVATLFR 83 Query: 86 LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145 L LN+A+TR IL+ G+ AG ++ FG +VGG+ +G VVF+I+ II F+V+ KGA Sbjct: 84 LGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIAIIQFVVVAKGA 138 Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205 R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + FYG+MDGASKFV Sbjct: 139 DRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGASKFV 198 Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265 +GDAIAG+LI ++N+VGG+++G +G + A YT+LT+GDGLV+QIP+L+IS AAG Sbjct: 199 KGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLISFAAG 258 Query: 266 VIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 +++TRV+ + VG + +Q+ S P + +A V LVPG P L FL L Sbjct: 259 ILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGVLLAL 318 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG--MEVGYRLIPMVDFQQD 380 LA I + + +A + +E LG + + RL P + Q Sbjct: 319 LAALI----PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRVRLAPELFDQLK 374 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 L R+ ++ +E G P + + + L Y + + V I G + Sbjct: 375 PLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQLERTQGEGE 434 Query: 441 NP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 G + +LPG A + + +E ++ + I Sbjct: 435 RKRGLSLPSLPGRAGAETG---------------------SQMEIEAMLVGRIGDAICAK 473 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 G QEA L D +++ P+L +++ + L VL LL V IR++R I E Sbjct: 474 PWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTGVGIRNLRAIAE 532 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 L + + +D L + R AL I+ QW + + + L LE +L Q L G Sbjct: 533 GLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQRLIASGQ 592 Query: 620 LEPGLAD-----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 ++ + Q + VL+ LR + LR + VL+ Sbjct: 593 IKFIDLQVDEQHAFVQQVIADMQTTWRDHPGAVLVTGQDLRRSVEALLRGGERGVTVLAV 652 Query: 675 LELSDNRHIRMTATIG 690 E+SD R+ TI Sbjct: 653 EEISDEVTYRVLHTIS 668 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 180/688 (26%), Positives = 335/688 (48%), Gaps = 73/688 (10%) Query: 15 KSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 K +L P ++ L+ +++++ LP ++D + S ++L++ + + L+ Sbjct: 4 KLRNSTLLFNPSSVMIAFLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKV 63 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 PT++L T RL L++A+TR I+ G+V+E G F++GGN G+++FV Sbjct: 64 TFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGRVIETIGEFVMGGNLISGLLIFV 118 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 I+ I+ F+V+TKG R+AEVGARF LD +PGKQM ID DL +GLI ++A+K R+++ E Sbjct: 119 IITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTE 178 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q +S+ + + +++LTIGDGL Sbjct: 179 NKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGL 238 Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--P 309 V+QIP+L++S A GV +TR+ +D ++Q+ + S V+G++ ++ G+ P Sbjct: 239 VSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNP 298 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369 L+++ +L + + ++ E + V E ++ + Sbjct: 299 TLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVEPEGSGVFE------------SLKFVF 346 Query: 370 RLIPMVDFQQDGELLGRIRSIR-KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 R D Q + R++ + + + Q +G P V ++ ++D+ A Y + GV Sbjct: 347 R-----DAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGV--- 393 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 + + ++ G + E D F L+ + S + Sbjct: 394 -------QTYQFSQNSSEGIV--EILNDDVFNLHD-------------------DLSANL 425 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 +++ I E + Q + ++ +A + ++ + + V L +H VL+ ++ Sbjct: 426 DEIISYFIQTRLVEKYNLQYSSNIVAELASQ-SEIMKSEIDSAVGLNRVHDVLKQMIRSP 484 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 D + E+L + ++SDP +R IT + ++HV+ L Sbjct: 485 EFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPE--- 541 Query: 609 LLLQALQGGGGLEPGLADRLLA---QTQEALSRQEMLGA-PPVLLVNHALRPLLSRFLRR 664 L + + G E +RL+ + + R M PVL+VN L+ F+++ Sbjct: 542 -LTEEISGYVAGEFEDFERLIEIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQ 600 Query: 665 SLPQLVVLSNLELSDNRHIRMTATIGGK 692 + L+V S+ ++ DN I + I + Sbjct: 601 VMSTLLVCSHTDIVDNNCISSSEVINVQ 628 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 136/269 (50%), Positives = 203/269 (75%), Gaps = 6/269 (2%) Query: 35 MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94 M+LPLP ++D L N+ALS ++L+++M+ + L+F+ FPT+LLFTTL R+ LN+ +TR Sbjct: 33 MILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTR 92 Query: 95 IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154 +IL++ A AG+++ FG + +GGNF +G VVFVIL I+ F+VI KGA R+AEVGAR Sbjct: 93 LILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGAR 147 Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214 F LD MPGKQM+IDAD+ AG+I +EA++RR+ V+QE+ YG+MDGA KFV+GD+IAG++ Sbjct: 148 FTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMI 207 Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS-T 273 + ++NIVGG ++G+ QHGM+ G A +Y +LTIGDGLV+QIP+L++S +AG+++TR + Sbjct: 208 VALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITRSGDS 267 Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302 +VG Q+ Q+F P +L++ L Sbjct: 268 GGNVGAQIGGQIFGQPKALLMAGGAGLSL 296 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 166/681 (24%), Positives = 298/681 (43%), Gaps = 110/681 (16%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N + + W+I+A P IL L + LP +++D N+A S+ ++ + + Sbjct: 30 NFRGSSWKIVAIPSCILFTL---IFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FP++LL+ LLRL LN+ASTR IL G A ++ A G+F G+ + + V ++ Sbjct: 87 IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG A ++S + +E+ Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 D++ +M+G +FV+GDAI +++ +NI+ L +G H + L +GD LV Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDL-------WLTVLGDALV 254 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +QIPAL+ S AA ++ +V + + + +++ + L A +L + +PG P + Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 L F+ LL L + + VE D + + + Sbjct: 315 ILGFSV-LLFLGY---------KNPSSGETLLFQKERVEFVLPDEGVGNPANL------- 357 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV-VHIRDNMDLQPARYRILMKGVEIGSGD 431 + R + QE+G + P + +R P R++ G E+ + Sbjct: 358 --------------YKDARNQIYQELGVVFPEAIVVRHVTGSSP---RLIFSGQEVALRE 400 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 A ++ + T+ Sbjct: 401 LSC--------------------------------------PAILESIRQLAPETI---- 418 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 + R L+D + E+++P ++ +L +L+ L+ E+V + Sbjct: 419 --------SERFVTR-----LVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSL 465 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 ILE + + + EL VR LG+ I + +D + VI +D+ +E+ + Sbjct: 466 HLFPKILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVR 525 Query: 612 QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 + Q L+ L ++++AQ + L G ++ R L R + P L+V Sbjct: 526 DS-QEKVVLD--LNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYFPDLLV 580 Query: 672 LSNLELSDNRHIRMTATIGGK 692 L++ EL + I + + + Sbjct: 581 LAHSELPEEIPITLLGAVSDE 601 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 229/384 (59%), Gaps = 8/384 (2%) Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219 MPG+QM+IDADLN G I + EA++RR + +EA FYG+MDGASKFV+GDAIAGI+I++IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279 I+GGL++GV+QH + A ++Y+LLTIGDG+V Q+PAL+I+ G+IVTR ++D ++ + Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK 339 +++ Q+ S P +LL A L L PG+P L L+ A + +AW + + + Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180 Query: 340 -------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392 + A+ E + + + VG +V Q L+ RI + RK Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVS-QPGSVLMDRIATFRK 239 Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452 + AQ++G + P V +D L RY I + GV G G+A R LAI+P +PGE Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299 Query: 453 ATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQL 512 T DP +GL A+WIE + A + +T+V+A TV THL ++ + +A L R E +L Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359 Query: 513 LDRVAQEMPKLTEDLVPGVVTLTT 536 L+RV Q L E+L+P V++++ Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 365 bits (938), Expect = 3e-99, Method: Composition-based stats. Identities = 142/664 (21%), Positives = 277/664 (41%), Gaps = 101/664 (15%) Query: 29 LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88 L IL ++ LPLP +LD + ALS++ + + FP L+ LLRL L Sbjct: 16 LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75 Query: 89 NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148 N+ASTR I+ G A ++ + G F G+ ++L +NF++++KG+ RI Sbjct: 76 NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130 Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208 AEV +RF L+ +P KQMA+D+DL +G KK+++ + +E DF+ +M+G +FV+GD Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190 Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268 AI +++++N+V V L + + G+A E +GD LV+Q+PAL+ S AA ++ Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245 Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328 +++ ++ + + + + ++ L +P P +L + L W+ Sbjct: 246 SKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLL-----WLA 300 Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388 R+++ +E ++ A + Q+ + R Sbjct: 301 YRKEEPASEDSCIERAFSYVEGACPKE-----------------------QESQFYQVYR 337 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 + ++ +++G PV+ + ++ G+ + ++ T Sbjct: 338 AASEEVFEDLGVRLPVLT------------SLRIEERPWLR---VFGQNVYLDEMTPEAV 382 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 LP + +A ++ ++ Sbjct: 383 LPFLR---------------NIAHEALNA----------------EVVQKY--------- 402 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 L+ + ED+VP ++L++L + + L+ E+V ++ ILE +A + Sbjct: 403 ----LEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEAVAVYQNSG 458 Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRL 628 L VR +LG I + + K + VI +D +E L+ + P + + + Sbjct: 459 DSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSYSKSN---PVMQENV 515 Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688 + + L R ++ + R + + L P L+VLS+ EL I Sbjct: 516 IRRVDSLLERSVFKDFR-AIVTSCETRFEMKKMLDPHFPDLLVLSHDELPKEIPISFLGI 574 Query: 689 IGGK 692 + + Sbjct: 575 VSDE 578 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 206/350 (58%), Gaps = 13/350 (3%) Query: 4 LAAMLRLPANLKSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 + A LRL ++LK + +L P +L L+ +++++ LP ++D + S ++L+ Sbjct: 1 MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 + + L+ PT++L T RL L++A+TR I+ G+V+E G F++G Sbjct: 60 IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGQVIETVGQFVMG 114 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GN G+++F+I+ I+ F+V+TKG R+AEVGARF LD +PGKQM ID DL +GLI ++ Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 A+K R+++ E +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q +S+ + Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298 +++LT+GDGLV+QIP+L++S A GV +TR+ D + QL + S Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294 Query: 299 LGLLGLVPGMPNLVFLLFTAGLL--GLAWWIRGREQKAPAEPKPVKMAEN 346 + ++ L PNL+++ +L GLA W+ ++ A Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHG 344 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 91/212 (42%), Gaps = 9/212 (4%) Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 + ++ + +++ I E + Q + ++ +AQ+ ++ + + V L +H VL+ Sbjct: 427 DVASNLNNIISYFIHHRFIEKYNLQYSNNIVAGLAQQ-SEIMKSEIDSAVGLNRVHDVLK 485 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 ++ D + E L + ++SDP +R IT + +V+V+ L Sbjct: 486 QMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQEGKVNVVLL 545 Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQ---TQEALSR-QEMLGAPPVLLVNHALRPLL 658 L + + G E DRL+A + + R G PV++VN ++ Sbjct: 546 TPE----LTEEISGFVAGEFDDVDRLIAVQTGLRNEIKRLLVQYGVKPVVVVNENELNVV 601 Query: 659 SRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 F ++ + ++V S+ ++ ++ I + TI Sbjct: 602 KAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 12/394 (3%) Query: 307 GMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363 G+P F L + + + R+++A A K E + + + Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 + +G +L + Q+ EL R+ +R+KFAQE GF+ P + + D++ L P YRI + Sbjct: 181 ELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIH 239 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 G + S + G L + ++PGE +PAFG+ A + + +GY V+ Sbjct: 240 GTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVD 299 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 +V+ THL+ ++ + A+L ++ + LLDR+ E KL ED+ P ++ + L VL+ Sbjct: 300 NLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKL 359 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LL E++ IR++ ILE +AE AP+ P + VR+ + + I ++V+ L Sbjct: 360 LLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLG 418 Query: 604 TPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 + + Q+L+ ++P L ++ + A+ + G VL+ + RP Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 478 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + + R L VLS++E++ ++ I Sbjct: 479 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 512 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 172/348 (49%), Gaps = 2/348 (0%) Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396 K+ + W D L +EVG LI +V + + R+ ++R + A Sbjct: 97 AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIVAP-ESKDFFDRMTAVRCQLAD 155 Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456 +G + P + +RDN L YRIL+ E+ PG+++A++ GTA TL G VD Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215 Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 P FG IWI + + +A+ GY V+E S ++ THL + +H+ E+ + ++L++ Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 + E+L ++L+T+H VL LL+E V I++ +LETL H D L A Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635 VRV LGR I Q++ VH IGL+ LE LL+ G G + +RL+ ++ Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395 Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 + E P L+ + LR L R + LP++ VLS E+ N I Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 172/313 (54%), Gaps = 5/313 (1%) Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 RI + R ++A E GF+ P V RD+ L P Y++ + G G YPGR LAI+P Sbjct: 17 FAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLAIHP 76 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 G LPG AT +PAFGL A+WI+ +++A+ G+T V+ T + TH+ LI HAA Sbjct: 77 AGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTHAAR 136 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 LFGR E LLD V P L +++VP V+ + + +VLQ LL E+VPIRD+ I++TLA Sbjct: 137 LFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQTLA 196 Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG--- 619 + A + DP L VR LG AI Q+ +D + V+ LD LE + + L G G Sbjct: 197 DVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADGHGT 256 Query: 620 --LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677 L+P LA+ L + G P LL +R L F RR P+LVVLS E+ Sbjct: 257 HVLDPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRRALKTFSRRVAPRLVVLSINEV 316 Query: 678 SDNRHIRMTATIG 690 D +R AT+G Sbjct: 317 PDAIPLRAFATVG 329 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 169/640 (26%), Positives = 286/640 (44%), Gaps = 105/640 (16%) Query: 54 LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113 +++VL+ + +R L+FAAFP +LL T RL LNV++TR+IL + A AG+V++A Sbjct: 37 CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91 Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173 F +V G+ +G V+F ++ I ++VI +GA R+AEV ARF LD +PG+Q+AID + Sbjct: 92 FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151 Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233 G IG DEA+ RR+E+ + ADF+G MDG + V+GDA+ G++I IN+VGG +G+ Q G Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GA 210 Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293 + + Y L +GDGL+AQ+PA++++ AA ++V+RV + P ++L Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353 A +L +L VPGMP L F GLL +A ++ A P Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKKLASPE------------ 317 Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 L + V L P + +G L ++R++ + + P + + +L Sbjct: 318 --------PLRVGVPASLRPELREDLEGAL----PALRQRCSATLNLPFPPLVLELRPEL 365 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 + ++ + T+ A DP W+ + Sbjct: 366 PERSLALDLEDRSLAR-----------------ETIEASAADDPD-----AWLLAGF--- 400 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 H +++ A+ L + ++R + P + + + Sbjct: 401 --------------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAES 440 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAE----HAPIQSDPHELTAVVRVALGRAITQQ 589 + LH + + + E+VP+ + +L LAE H P + + R AL ++ Sbjct: 441 IDLLH-IARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497 Query: 590 WFPG------KDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSR 638 G + LE LL+ + G L P R+LA+ Q Sbjct: 498 LHAGVCELGDPRWLRA---SPDLEDLLVARWEPGANRPRVHLSPKERQRVLARVQGE--- 551 Query: 639 QEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 P ++L + RP L+ + P + V + EL+ Sbjct: 552 -----GPAIVLCSARARPALAALMTGLRPHVPVFALGELA 586 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 10/298 (3%) Query: 400 FLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF 459 P +++R N L Y + + + + G G L + + G A + Sbjct: 1 MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLA-MMGVAVREGER 59 Query: 460 GLN---AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 L +W+ + G + + ++A HL+ ++S+HA+ G QEA+ LLDR+ Sbjct: 60 FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 + P L ++ ++ + + ++ Q L+ E+V IRD+R+ILE L E + + D LT Sbjct: 120 EERAPDLVREVT-RLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTE 178 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631 VR AL R I+ G++ + I LD +E + +A++ LEP + +R + Sbjct: 179 YVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVTERFMKA 238 Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +A PV++ + +R + R + L V+S EL+ ++ I Sbjct: 239 VADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVNRI 296 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 11/311 (3%) Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 L I +R ++ + +G P V IR + L + + + P L P Sbjct: 34 LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP 93 Query: 443 GTAAGTLPGEATVDPAFGLNA---IWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 ++ T + G W+++ QA+ G VE + T L + ++ Sbjct: 94 CSSLV------TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERY 147 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 AE G QE + L+D + +L ++L + + + ++LQ L++E + IRD+RTI Sbjct: 148 TAEFIGVQETRYLMDAMEGRYGELVKEL-QRQIPVGKVAEILQRLVEENISIRDLRTIFG 206 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGG 618 L AP + D LT VR+AL R + +++ K + V+ L +E L+ ++ Q Sbjct: 207 ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSS 266 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 G L +R + VLL +R + + + R L L VLS EL Sbjct: 267 GTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELG 326 Query: 679 DNRHIRMTATI 689 D ++++ TI Sbjct: 327 DEMNLKVAGTI 337 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 13/346 (3%) Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224 M+IDADL AG++ ED KKRR + E+ YG++DGA KF++GDAIAGI+I+ +N++GG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282 VG++QHGM + A YT L+IGD LVAQIPAL+IS + G IVTRV + + ++G +++ Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--WIRGREQKAPAEPKP 340 LF+N S ++++A + +G +PG P VF++ +A L+ + + R R + E Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180 Query: 341 VKMAENNTVVEATWND---VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397 K A++ EA D + L + P ++ ++K F E Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKPKLEQHNLA------SRLKKTFFIE 234 Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457 G P + I A I + + + PG + G L Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294 Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 + W+ + A GY A ++ L++ + +E Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 5/293 (1%) Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL--GR 386 R P K + ++ + D + E LI +V + +L Sbjct: 1 KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLILLVPKSRREDLEKAQL 59 Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446 +R +F + G P V +RD L +L+ + + Y +N Sbjct: 60 AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119 Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506 + T+ W+ E+ + GY + A + L ++++ E FG Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179 Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566 QE + +LD++ + P L ++++ T+ + +VLQ LL E+V +R+M+ I+E LA AP Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAP 238 Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 + D L +R A+ R I ++ G E+ + + +E ++ + ++ G Sbjct: 239 REKDVINLVEHIRGAMARYICHKFANG-GELRAVMVSAEVEDVIRKGIRQTSG 290 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 10/216 (4%) Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 VE + L+ L++ H +L R+ Q+L ++ PKL E+LVPGV++L+ L KVL Sbjct: 8 VEPDALAQLPLDELVACHECDLLLRKPVLQVL---SKASPKLAEELVPGVISLSGLLKVL 64 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q LL E+VP+RD+R+I E +A +A D L AVVRV L RAI Q + E+ VI Sbjct: 65 QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124 Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 L+ LE++LL +LQ G LEP +A++L EA RQEM G P +LLV + Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R +LSRF R ++P L VL+ E+ DN+ + + AT+G Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 11/172 (6%) Query: 233 MSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVM 292 M A +TLLTIGDG+ Q+PAL+IS A G+IVTR ++D+++ ++ QL S P + Sbjct: 1 MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60 Query: 293 LLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA 352 L+ AAVL L L+PGMP ++ G + W R R+ A A +PV + Sbjct: 61 LIVAAVLAALLLLPGMPKWPIVVI--GTIAFVAWRRIRKAAAEAAAEPVDEEVAAESTAS 118 Query: 353 TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV 404 L + +G L + ++ RI +R+ ++ G P Sbjct: 119 P--------PLEIRLGEALSG-AWAGEGALVMDRIAGLRRVHEEQFGLPFPP 161 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 4/129 (3%) Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293 A +Y++L+IGDGL QIP+L+IS +AG+IVTRV + Q++ ++ +Q+ P ++ Sbjct: 1 SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353 L+A VL LL L+PG P + F+A L I R +K+ V+ E +++V Sbjct: 61 LTAVVLMLLALIPGFPFITLAFFSALLA--LPIILIRRKKSVVSANGVEAPEKDSMVPGA 118 Query: 354 WNDVQLEDS 362 + Sbjct: 119 CPLILRLSP 127 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 67/108 (62%), Positives = 87/108 (80%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 + L L A + ++L P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVAM Sbjct: 1 MFEALNLRALMAPANLRMLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVAM 60 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111 +T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG AAGKV+ Sbjct: 61 YTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108 Score = 78.7 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 4/98 (4%) Query: 598 HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653 V+ LD LER+L QA+ GGG +EP LAD LL E RQE +G PPVLLV Sbjct: 106 KVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAEVAQRQEDIGLPPVLLVPPQ 165 Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 LR LLSRFLRR++P L V++N E+ + R IR+TA +GG Sbjct: 166 LRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 92.6 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 4/100 (4%) Query: 597 VHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 ++V+ ++ LE+++ A Q G++P LA+ L QT +A RQE LG PVLLV Sbjct: 6 LNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLVPD 65 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 ALR ++R L+R+ P L VLS+ E+ +NR IR+ +G K Sbjct: 66 ALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 85.6 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 436 RWLAINPGTAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 LA++ G A G L G+ DP FGL+AIWI+ + A GY VV+A TV+ATHLNH Sbjct: 6 EMLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNH 65 Query: 495 LISQHAAELFGRQEAQQLLDRVAQ 518 +++ +A EL G E Q LLD + Sbjct: 66 VLTVNATELLGPDEVQALLDGLKA 89 >UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C0AUZ1_9ENTR Length = 111 Score = 82.9 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 66/78 (84%), Positives = 74/78 (94%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL Sbjct: 1 MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60 Query: 61 VAMFTQRTLEFAAFPTIL 78 VAMFT+RTL+FAAFPTI Sbjct: 61 VAMFTKRTLDFAAFPTIF 78 >UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQE5_CLOPH Length = 266 Score = 81.4 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 48/217 (22%) Query: 359 LEDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 L + + ++VG + ++ Q G +++ +R A+E G+L P V I D++ L Sbjct: 88 LSEPITLKVGCGFVDYLMKENQQG--FPKLQQVRINMAKESGYLLPTVRILDDITLDNHC 145 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 ++I + + + + + Sbjct: 146 FQI-----------LFYDKVVYEQNNLNPSSSEYPEIFE--------------------- 173 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 LN + H +L RQ + L+D +++ P L + +P ++ + Sbjct: 174 -------------QLNLTCTAHYEKLLHRQIVKDLIDNLSKLYPVLVDGYIPDKLSYAQI 220 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574 VL++L++ K IR++ I+E L ++ + D + Sbjct: 221 QFVLKSLIEHKKSIRNLCEIIEYLEDNLVLGKDLVSI 257 >UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI000185465C Length = 72 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328 T + ++D +++ QL + +++ A+L L +PG+P L +AW I Sbjct: 3 TTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLIS 62 Query: 329 GREQK 333 + Sbjct: 63 REGKD 67 >UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX Length = 63 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 645 PPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 VLLV LR L LR + VLS E+S+ +++ Sbjct: 4 QAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMG 46 >UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190A6ED Length = 85 Score = 47.5 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%) Query: 286 FSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345 +NP V++++A + +G +PG P VF++ + L L ++ +++ A+PK K + Sbjct: 1 MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ 60 Query: 346 NNTVVEATWNDVQLEDSL 363 ++ E + + L L Sbjct: 61 PLSIEEKEGSSLGLIGDL 78 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 810 0.0 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 804 0.0 UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 803 0.0 UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 800 0.0 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 800 0.0 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 797 0.0 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 786 0.0 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 785 0.0 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 785 0.0 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 783 0.0 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 782 0.0 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 781 0.0 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 779 0.0 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 775 0.0 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 774 0.0 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 764 0.0 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 763 0.0 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 763 0.0 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 762 0.0 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 760 0.0 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 759 0.0 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 758 0.0 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 757 0.0 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 755 0.0 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 752 0.0 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 752 0.0 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 743 0.0 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 740 0.0 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 738 0.0 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 737 0.0 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 737 0.0 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 736 0.0 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 735 0.0 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 733 0.0 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 731 0.0 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 730 0.0 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 730 0.0 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 725 0.0 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 724 0.0 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 723 0.0 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 723 0.0 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 718 0.0 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 718 0.0 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 717 0.0 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 715 0.0 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 713 0.0 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 708 0.0 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 703 0.0 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 700 0.0 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 697 0.0 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 694 0.0 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 691 0.0 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 688 0.0 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 685 0.0 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 684 0.0 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 684 0.0 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 682 0.0 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 679 0.0 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 679 0.0 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 678 0.0 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 677 0.0 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 676 0.0 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 670 0.0 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 670 0.0 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 669 0.0 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 666 0.0 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 665 0.0 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 662 0.0 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 662 0.0 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 656 0.0 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 655 0.0 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 654 0.0 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 653 0.0 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 648 0.0 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 648 0.0 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 646 0.0 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 646 0.0 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 639 0.0 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 638 0.0 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 632 e-179 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 624 e-177 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 622 e-176 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 618 e-175 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 618 e-175 UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 609 e-172 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 597 e-169 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 592 e-167 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 592 e-167 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 582 e-164 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 578 e-163 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 576 e-162 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 560 e-158 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 556 e-156 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 497 e-139 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 480 e-133 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 456 e-127 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 429 e-118 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 419 e-115 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 408 e-112 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 371 e-101 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 352 2e-95 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 339 2e-91 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 328 5e-88 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 312 2e-83 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 280 1e-73 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 280 1e-73 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 270 1e-70 UniRef50_UPI000190D087 possible secretory protein (associated wi... 232 4e-59 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 181 6e-44 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 129 5e-28 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 114 9e-24 UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl... 106 4e-21 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 104 1e-20 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 88 1e-15 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 82 8e-14 UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri... 73 4e-11 UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T... 61 1e-07 UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ... 56 5e-06 UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re... 51 1e-04 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 321/695 (46%), Positives = 467/695 (67%), Gaps = 10/695 (1%) Query: 5 AAMLRLPANLK---STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 A + LP L+ ++ L + +++++++M++PLP+ +LD + NIA++I++LL Sbjct: 11 LAAIGLPLKLQGISLKKYSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLT 70 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 ++ + L+F++FP++LL T+ RLALN+A+TR+IL+ G G +AAG+V+ AFG F+VGG Sbjct: 71 TIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILLHGGEGESAAGEVIRAFGQFVVGG 130 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N+ +G+++F ILVIINF+VITKGAGRIAEV ARF LD MPGKQMAIDADLN+GLI EDEA Sbjct: 131 NYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEA 190 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 ++RRSE+ QE++F+G+MDGASKFVRGDAIAGILI +INIV G ++GV Q +S +A+ Sbjct: 191 RRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQI 250 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301 YT+LT+GDGLVAQIP LVIS AG +VTR S D ++ + + Q+ + P V+L+SA VLGL Sbjct: 251 YTILTVGDGLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGL 310 Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGR--EQKAPAEPKPVKMAENNTVVEATWNDVQL 359 L ++PGMP + F L + +W++ R ++ + K + AE E Sbjct: 311 LAIIPGMPTVAFGLLAIAMGSWSWYLFRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLA 370 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 D L ++VGY LI +VD Q G+LL +IRSIR++FAQ+MGF+ P +HI+DN+ L+P Y Sbjct: 371 LDLLRLDVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYS 430 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 L+KGVE+G G+ PG +LA+ G G + G ATV+PAFGL A WI S +E+A++ GY Sbjct: 431 YLVKGVEVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGY 490 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 TVV+ASTV+ATH+ ++ HA E+ RQE Q LLD V++ PKL E+L+P +V+L + K Sbjct: 491 TVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQK 550 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VLQ LL E+V IRDM TILETLA++ I P +L +VR +L R+I +++ + + Sbjct: 551 VLQGLLRERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTA 610 Query: 600 IGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 + L E L+ +A+ G L P A +LL + + + + + PVL+ + Sbjct: 611 LVLGPDAENLVAEAIVSGDYGSYLSLSPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRV 670 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 RP + + L LP LVVLS E+ N + +I Sbjct: 671 RPFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 251/683 (36%), Positives = 411/683 (60%), Gaps = 14/683 (2%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + +L + ++P+P+F+LD++ FN+++++++L +F + L+ + FPT+ Sbjct: 3 KKTDLGVGLYLLCAVLFFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTL 62 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LLFTT+ R++LNV+STR+IL G+ G VV FG F+ GGN IG +VF++L+II Sbjct: 63 LLFTTIFRISLNVSSTRLILSTGNP-----GVVVNVFGQFVGGGNLVIGAIVFIVLIIIQ 117 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VI KG+ R+AEV ARF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+ Sbjct: 118 FVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGA 177 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA+K+V+GDA AGI+I +IN+VGG ++GV+ G+ + A + + LLTIGDGLV+QIP+ Sbjct: 178 MDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPS 237 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IS + G++VT+ S + D +++ QLF V+ + + VL +LG++ + N +L Sbjct: 238 LLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG 297 Query: 318 AGLLGL--AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIP 373 + + + E + + + + N V D + +E GY +IP Sbjct: 298 LAVAFFVTGKNLDKKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIP 357 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 + D Q G+LL R+ IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ Sbjct: 358 LADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEIL 417 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 ++A+NPG + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL Sbjct: 418 FDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLT 477 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 +I H AEL RQ+ Q L++ + + P + ++L+P ++ L + KVLQNLL E + IRD Sbjct: 478 EVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRD 537 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 + TI ETLA+HA D LT VR L RAI+ ++FP + VI LD +E+ ++ + Sbjct: 538 LLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSS 597 Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 ++ L+P ++ + + + E LG +++ + +R + Sbjct: 598 VKQTEQGSYLSLDPDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKD 657 Query: 669 LVVLSNLELSDNRHIRMTATIGG 691 L+VLS E+ N ++ + Sbjct: 658 LIVLSYNEVESNVELQSVGMVTA 680 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 803 bits (2075), Expect = 0.0, Method: Composition-based stats. Identities = 436/695 (62%), Positives = 554/695 (79%), Gaps = 4/695 (0%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M N +++LR+ +LK+TQWQILAGPILIL+ILSMMVLPL F+LD+ FTFNIALSI++LL Sbjct: 1 MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG +AG+V+E+FGHFLVG Sbjct: 61 VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++ Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M + A E Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---QKAPAEPKPVKMAENNTVVEATWNDV 357 +LGLVPGMPN++FL+FT L L+WW+ ++ + + ++ + EA+WNDV Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWLYEKKYDLENDFIKSNKKYKFIHDAISEASWNDV 360 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 +LED + +E+GY+L PM D + G+LL RIR +RKK AQE+GFLPP+V I++NM L Sbjct: 361 ELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNS 420 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 YRI +KGVE+G G + GR++AI+ G +LP E +P FGL+ WI+ K +AQ + Sbjct: 421 YRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKK 480 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 GY+V+E+S V++THLN LI+ H +LFGRQEAQQLL+RV + PKLTEDL+P + LT Sbjct: 481 GYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIF 540 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597 HK+L+NLL E VPIRDMRTILETL+EHA Q DP+ELT++VR+AL + I Q+ F + + Sbjct: 541 HKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNII 600 Query: 598 HVIGLDTPLERLLLQALQ-GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 +IGL+ LERLLL +L+ G +EP L++ LL QT+EA+ +Q ++G+P VLLV H+LR Sbjct: 601 EIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRY 660 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 LS+FLR++ P+L VLS E+ D + I+MT IG Sbjct: 661 FLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIGT 695 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 800 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 278/682 (40%), Positives = 429/682 (62%), Gaps = 12/682 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + + L ++LI+ M+++PLP F+LD+L FNI+LS+++LLVA+ T+ L+F+ FPT+ Sbjct: 2 KARDLTVLAGVILIIVMLIIPLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTM 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RL L+V++TR IL G A AG V++ FG F++GGN +G +VF+IL++I Sbjct: 62 LLLVTLFRLGLSVSTTRSIL-----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGA R++EVGARF LD MPGKQM+IDADLNAGLI + EAK+RR ++ EADFYGS Sbjct: 117 FIVITKGAERVSEVGARFTLDAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGS 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIA I+I++IN++GGL++G++Q GM M AA +YTLLT+GDGLV QIPA Sbjct: 177 MDGASKFVKGDAIASIIIVIINMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPA 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+ISTA GVIVT+ +++ ++ + Q+ + P ++ ++AA + LLGL + +V Sbjct: 237 LLISTATGVIVTKAASEGNLSTDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSIA 296 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375 L + + + + + V D + E GY LIP+ Sbjct: 297 GLLAFAGYRLSKASLAKANFEEALLEEAPPEEPSGPESVVQLLQMDPIEFEFGYGLIPLA 356 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL R+ IRK+ A E+G + PV+ IRDN+ L+P Y I +KG + G+ Sbjct: 357 DANQGGDLLDRVVMIRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLD 416 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 ++A++ G ++ G T++PAFGL A+W++ ++++A++ GYTVV+ TV++THL + Sbjct: 417 HYMAMSTGEQDDSIVGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEV 476 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 + HA EL GR+E +QL+D + + P L E++ P +T + KVL+NLL E++ IR++ Sbjct: 477 LKAHAYELLGREETKQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLP 536 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 I E LA++ P+ D + +T VR AL R IT Q G +E+ VI L +E+ + A+ Sbjct: 537 VIFEALADYGPLTKDMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIG 596 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 L P + +L T + + + LG V+L + A+R + + + R LP + Sbjct: 597 QNENGSFLALAPADSQAILQNTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVP 656 Query: 671 VLSNLELSDNRHIRMTATIGGK 692 V+S EL + ++ + + Sbjct: 657 VVSYNELEPDVEVQSVGVVNAE 678 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 294/694 (42%), Positives = 434/694 (62%), Gaps = 26/694 (3%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K ++ + +L++LI+ MM++PLP ++LD+L NI +++LL + ++ LE AAF Sbjct: 10 KVLRYADVGMAVLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAF 69 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 PTILL TL RLALNV++TR++L+ G+ AG+++ AFG+F+VGGN+ +G VVF+ILV Sbjct: 70 PTILLMATLFRLALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILV 124 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 II F+VITKGA R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADF Sbjct: 125 IIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADF 184 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGASKFV+GDAIAG++I INI+GGL +GVLQ GM + A +Y+LLT+GDGLVAQ Sbjct: 185 YGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQ 244 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IPAL++STA G+IVTR + + D+G MV + N + + + +L L +VPG+P + F Sbjct: 245 IPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFA 304 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT-------------VVEATWNDVQLED 361 L + + +A+ I+ +A + + + D Sbjct: 305 LLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLPLLTVD 364 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 + +E+GY LIP+VD Q G++L RI +IR++ A ++G + P + IRDN+ L+P Y I Sbjct: 365 PMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIR 424 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 +KG E+G G+ P +LA++ G L G T +PAFGL A+WI +++QA+ GYTV Sbjct: 425 VKGAEVGRGELLPDHYLAMSTGGE-DLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTV 483 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V+ +V+ATHL+ +I ++ A+L RQE Q+L+D VA+ P +T+DL+ V++L + KVL Sbjct: 484 VDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVL 542 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q L+ E+V IRD+ T+ ETLA+H P L VR AL R IT + + V Sbjct: 543 QGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVLGVYT 602 Query: 602 LDTPLERLLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 L E+ + + ++G + P L+ A M G PVLL + +R Sbjct: 603 LSPRWEQRIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVR 662 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++ R + SLPQL V+S E++ + +R + Sbjct: 663 LVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 302/686 (44%), Positives = 435/686 (63%), Gaps = 11/686 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + ++ IL +M++PLP F LD+L +I+LS+++L+ +MF LEF+ F Sbjct: 15 RFAKQGDILLAGGVVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIF 74 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTLLRLALNVASTR+IL+ G G AAG+V+ AFG F+VGG++ IG V+F+IL Sbjct: 75 PSLLLVTTLLRLALNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILF 134 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+N VIT G RIAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR + +EADF Sbjct: 135 ILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADF 194 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV GD AG+ I +INI+GGLLVG++Q M A +YTLLT+GDGLV+ Sbjct: 195 YGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVST 254 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IP++++STAAG+IV+R +++ +GE+ + QL N M L + VL L LVPG+P + FL Sbjct: 255 IPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFL 314 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND------VQLEDSLGMEVG 368 +F+A L A + R+ + + + + D+L +EVG Sbjct: 315 IFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVG 374 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y LIP+VD +Q+G LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ Sbjct: 375 YGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVA 434 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 S + LA++PGTA + G T +PAF L A+WI + KE+A + GYTVV+ STV+ Sbjct: 435 SAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVI 494 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATHL + +H +E GRQE Q LLD +++ PK E+LVPGV++L + KVLQNL+ E Sbjct: 495 ATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVREN 554 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 V +RD+ +++ETLA++ P +P LT VR L R+I + + + +I LD +ER Sbjct: 555 VSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVER 614 Query: 609 LLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 L +++ G L P A RL+ + PV+L RP L++ L Sbjct: 615 TLQDSIRQTEGGAYLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLM 674 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689 R LP + VLS E+ + ++ + Sbjct: 675 RFLPNIPVLSQAEIPPDIRLQAVGNV 700 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 284/683 (41%), Positives = 429/683 (62%), Gaps = 12/683 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + L + +L + M+V+P+P +LD+L FN+ +S+ +LLVAM T LEF+ FP Sbjct: 4 WLKRTDLMVMLFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSIFP 63 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++LL TTL RL+LN+++TR+IL +G+ AG V++ FG+F++G N +G +VF+I++I Sbjct: 64 SLLLVTTLYRLSLNISTTRLILSQGN-----AGAVIQTFGNFVIGNNPVVGFIVFLIIII 118 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 + ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEADFY Sbjct: 119 VQYVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFY 178 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFV+GDAIA ++I+ IN+V GL++GV S A +YT+L++GDGLV+QI Sbjct: 179 GAMDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQI 238 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PAL++STA G++V+R +TDQ++G +V Q+F + + + + LLGL+ + L + Sbjct: 239 PALLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIP 298 Query: 316 FTAGLLGLAWW--IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373 G +A Q+ E + + + + + + E GY LIP Sbjct: 299 IAGGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVEPVEFEFGYGLIP 358 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 +VD +Q G+ + R+ IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+ G+ Sbjct: 359 LVDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEIL 418 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 G WLA++PG + G T DP FGL A+W+ +K +A+ GYTVV+ +V+ATHL Sbjct: 419 MGHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLT 478 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 ++ +HA EL GRQ+ ++LL+ + Q P + ED+ PG ++L + +VL NLL+E VPIRD Sbjct: 479 EVLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRD 538 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613 + TILE LA+ D +LT VR L R I Q+ G+D + V+ D LER + QA Sbjct: 539 LVTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQA 598 Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 + G GLEP A + + +E + + G PVLLV+ +R LSR +RR +P Sbjct: 599 VVEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVPD 658 Query: 669 LVVLSNLELSDNRHIRMTATIGG 691 L VLS EL + I + Sbjct: 659 LPVLSFAELDPSISIHSGGVVNV 681 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 295/686 (43%), Positives = 428/686 (62%), Gaps = 11/686 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + + ++ IL +M++P+P +LDL NI S+++LLVAM T+ LEF FP Sbjct: 17 LDSRSDILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFP 76 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 +ILL +TL RL+LNVASTR+IL+ G G AAG V+++FG F+VGG++A+G+V+F I V+ Sbjct: 77 SILLLSTLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVV 136 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 INF+V+T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FY Sbjct: 137 INFVVVTRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFY 196 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFVRGDA+A ILI+ +NI+GGL++G++ G+ + A +YTLLTIG+GLVAQ+ Sbjct: 197 GAMDGASKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQL 256 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PAL++S AAG++VTR + D+G ++ Q+ + P + ++ +L LL ++PG+P+ F L Sbjct: 257 PALIVSVAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFL 316 Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375 + +A+ E+K E + + D L + VGY L+ +V Sbjct: 317 LASVTGLMAYRRTTLEKKKARELQAEEKTV--PPPAENVETYLSLDLLELNVGYGLVDLV 374 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 + + L RIR IR++ AQEMG + P +HIRDN+ L+P Y +L+KG + + P Sbjct: 375 EGKAGSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPD 434 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 LA+NPG T+ G +P FGL A WI +E+ + QG+TVV+ TV++THL + Sbjct: 435 SLLAMNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEV 494 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I HAAEL GRQE Q+LLD + ++ P+L EDLVPG V+L L VL LL E+V IRD+R Sbjct: 495 IRSHAAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLR 554 Query: 556 TILETLAE---HAPIQSDPHELTAVVRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL 611 TILE +++ D L VR ALGR+I + GK + V+ D E + + Sbjct: 555 TILEAVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFM 614 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 + LEPGLA +LL+ + + G PVLLV+ R + RFL R Sbjct: 615 KQASQTPPGSPLVLEPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLERYF 674 Query: 667 PQLVVLSNLELSDNRHIRMTATIGGK 692 L VLS +E+ + I + + Sbjct: 675 SSLPVLSPMEVPKDVPIVSQEVVRFQ 700 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 278/686 (40%), Positives = 429/686 (62%), Gaps = 14/686 (2%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 + + ++ I+ MM++PLP FILD+L NI+LS+++LL+ +FT L+ + Sbjct: 3 KFNLKENMDVIVAFGVVGIVLMMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDLS 62 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FPT+LL TTL RL LN++STR+IL +G+ AG+V+EAFG F+VGGN+ +GI++F+I Sbjct: 63 IFPTVLLVTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFLI 117 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 ++I+ F+VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I + A+KRR E+ QEA Sbjct: 118 ILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEA 177 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYGSMDGA+KFV+GDAIAG+++ INI+GG+++G + M++ AA++Y LTIGDGLV Sbjct: 178 DFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLV 237 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +QIPAL+IST+AG+IVTR STD++ G + QL + P ++++ VL +LG++PG+P Sbjct: 238 SQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPA 297 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369 F G + +++ ++ + KP + + VE N + +S+ +E+GY Sbjct: 298 FFSLGIGAIAAGYFLGREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLI-NVESIEVEIGY 356 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 LI + D G+LL RI SIR++ A +MG + + IRDN+ L P +Y I +KG +G Sbjct: 357 GLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGG 416 Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489 + P L ++P ++ G T++P FG+ A+WIES E A+I+GYTVV++ST++ Sbjct: 417 YEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILI 476 Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549 THL +I +A EL GRQE + ++D + + ++L+P ++TL + KVL+NLL EKV Sbjct: 477 THLLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKV 536 Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609 I+D TILETLA+ + D LT VR+AL R+I + V L E L Sbjct: 537 NIKDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEEL 596 Query: 610 LLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664 + LQ ++P +++ QE ++ PV++V+ +R + + Sbjct: 597 VSNNLQRSVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEI 656 Query: 665 SLPQLVVLSNLELSDNRHIRMTATIG 690 P L VLS E+ ++ I+ + Sbjct: 657 VYPNLTVLSLNEIPNDIKIKAEGVVS 682 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 783 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 286/691 (41%), Positives = 428/691 (61%), Gaps = 14/691 (2%) Query: 8 LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67 + N + + I I+ I+ MMV+P+P +LD+L T +I+ +++ L++++FT+ Sbjct: 1 MATNVNRRWYSNIDVLAAIFIVSIVVMMVVPIPPLMLDILLTISISAAVLTLMISVFTKD 60 Query: 68 TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127 L+F+ P+++L TL RL+LNV +TR+IL EGH AG+V++ FG F+V G+ +G Sbjct: 61 PLDFSVLPSLILILTLFRLSLNVTTTRLILGEGH-----AGEVIQQFGEFVVKGSAVVGF 115 Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187 ++F ILV++NF+VITKG+ R++EVGARF LD MPGKQM+IDADLNAG+I E +A+ RR + Sbjct: 116 IIFAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQK 175 Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247 + EADFYG+MDGASKFV+GDAIA I+I+ INI+GG + GV+ GM + A +YTLLTI Sbjct: 176 IQAEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTI 235 Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GDGLV QIPAL++STA G++VTR +++ ++GE + QLF P + ++A V +L + G Sbjct: 236 GDGLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-G 294 Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQLEDSLGM 365 +P L L+ L+ L + QKA E + N + D++ + Sbjct: 295 LPLLPLLIVAIVLVALGRVMDKGSQKAVVEESAAARETALEESKKPENVLNLLNVDNMEL 354 Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425 E+GY LI +VD QQ G+LL RI IR++ A E+GF+ PV+ +RDNM+LQP +Y I ++G Sbjct: 355 ELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRGA 414 Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485 E+ G+ +LA++ G +PG T +PAFGL+A WI + +E+ ++ G TVV+A Sbjct: 415 EVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDAP 474 Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545 TV+ATHL +I +A E+ RQ+ + LLD ++ P +D + + L L KVL NLL Sbjct: 475 TVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEH-LDLGHLQKVLANLL 533 Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605 E+V IRDM TILETLA++A D LT VR +L R I Q ++ V+ L+ Sbjct: 534 RERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEPK 593 Query: 606 LERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 LE+L+L ++Q L+P + L+ + + + G PVL+ +R L R Sbjct: 594 LEQLILDSIQPSDFGSYMTLDPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRINLKR 653 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 R LPQL+VLS EL ++ + Sbjct: 654 VTERQLPQLMVLSYNELVHGVQVQAVGMVTT 684 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 782 bits (2019), Expect = 0.0, Method: Composition-based stats. Identities = 319/689 (46%), Positives = 437/689 (63%), Gaps = 11/689 (1%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 LP L I+LIL +M++PLP F+LD+L NI +S+ +LL A Sbjct: 7 ATLTPNLPGGLARRFNTEALLASSIVLILFVMLVPLPPFLLDVLLATNITISLAILLTAF 66 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + R LEFA FP +LL TTL RL+LNVASTR+IL EG AG ++ AFG F+V GN+ Sbjct: 67 YAARPLEFAIFPGLLLLTTLFRLSLNVASTRLILSEGK-----AGALISAFGQFVVAGNY 121 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 +G ++F++LV+INF+VITKG+GRIAEV ARF LD +PGKQMAIDADLNAGLI EDEA+K Sbjct: 122 VVGAIIFIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARK 181 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 RR E+ +EADFYG+MDGASKFVRGDAIAG++I +NI+GG L+GV QHGMS AA+++ Sbjct: 182 RREEIAREADFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFV 241 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLG 303 LL+IGDGLV+QIPAL+ISTAAG+IV+R S + ++ E+ QLF +L++ + L LLG Sbjct: 242 LLSIGDGLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLG 301 Query: 304 LVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363 LVPG+P + F L L L + R E++ A+P + E ++ + D L Sbjct: 302 LVPGLPLVPFWLLAGTTLLLGYQRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPL 361 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 +E+GY LIP+VD Q G+LL RI+ +R++ A E+G + P V IRDNM L RY I ++ Sbjct: 362 ELEIGYGLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIR 421 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 G + G+ PG +LA+ P T PG T DP FGL A+W+ A+ G TVVE Sbjct: 422 GNPVAEGEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVE 481 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 A V+ THL ++ ++A L RQE ++LLD+V + P L E+L P ++++ + KVL+ Sbjct: 482 APAVITTHLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKR 541 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LL E++PIRD+ +ILE LA+HA + LT VR AL IT+Q+ ++ LD Sbjct: 542 LLRERIPIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLD 601 Query: 604 TPLERLLLQALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 LER LLQ + G GLEP ++R L + + R G PPVLL + LRP+ Sbjct: 602 PILERHLLQQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPV 661 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMT 686 L FL S+P L VLS +L + + + Sbjct: 662 LYNFLAPSIPDLNVLSYNDLLPDTRVEVV 690 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 365/722 (50%), Positives = 492/722 (68%), Gaps = 44/722 (6%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 ++ L+ PIL+L++L MM LPLPAF+LD F+FNIALSI+VLLVA+++ R L+FA Sbjct: 25 IRGAGRGNLSVPILLLMLLGMMTLPLPAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAV 84 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPTILL TLLRLALNVASTR++L+EGH G AAGKV++AFG ++GGN+A+G+VVF+IL Sbjct: 85 FPTILLIATLLRLALNVASTRVVLLEGHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIIL 144 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 +IINF+V+TKGAGRI+EV ARF LD MPGKQMAIDADLNAG+I +DEA+ RR +V EAD Sbjct: 145 IIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEAD 204 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 FYG+MDGASKFVRGD++AGILI++INI GGLLVG++QH + A E Y LLTIGDGLVA Sbjct: 205 FYGAMDGASKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVA 264 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 QIP+L++S AA ++VTRV++ +D+ Q+++Q+F +P + ++ ++ ++G +PGMP+ F Sbjct: 265 QIPSLLLSVAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPF 324 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEP----------------------------------- 338 + LA++I R Q+A Sbjct: 325 ITLAIICGILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSA 384 Query: 339 -KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397 + +++ E +W+DV D +G+EVGYRLIP+VD Q GELLGRI+ +RKK +Q+ Sbjct: 385 RQGNPPPQSSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQD 444 Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457 +GFL P VHIRDN+DL P+ YRI + GV IG G+ +P ++LAINPG G+L G T DP Sbjct: 445 LGFLIPAVHIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDP 504 Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVA 517 AFGL AIWI+ A +EQAQ GYTVV+ STVVATHLN +I H EL G +E Q+ LD + Sbjct: 505 AFGLEAIWIDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLG 564 Query: 518 QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAV 577 ++ PKL E+LVP +++ L K LQ LL E+VPIRDMRTI E LA H D LT++ Sbjct: 565 EKSPKLVEELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSI 624 Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG--------GGGLEPGLADRLL 629 RV+L R I Q + VI LD LE+LLLQ++Q G +EP LA+RL Sbjct: 625 ARVSLARQIVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLN 684 Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 E +QEM G P VLLV +RP++++F+R + ++ V++ E+ DN+ I + ATI Sbjct: 685 KSLVETAKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744 Query: 690 GG 691 G Sbjct: 745 GA 746 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 779 bits (2012), Expect = 0.0, Method: Composition-based stats. Identities = 297/680 (43%), Positives = 452/680 (66%), Gaps = 8/680 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 Q + I + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ + L F+ FP++ Sbjct: 13 QQNDVMFSIFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSV 72 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RL+LNVA+TR IL+ G G AAG+V+ +FG F+VGGN+ +GI++F+ILV+IN Sbjct: 73 LLIVTLFRLSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLIN 132 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 FMVITKG+GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+ Sbjct: 133 FMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGA 192 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFVRGDAIAGI+I INI+GGLL+GV QH M G +A +T+LTIGDGLV+QIP+ Sbjct: 193 MDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPS 252 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IST+AG+IV+R D+ Q+ QLFS+ V+ ++ A+L LVPG+P + F+ Sbjct: 253 LIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIA 312 Query: 318 AGLLGLAWW---IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374 A + L + + +K E + + E ++ D + +E+G+ LIP+ Sbjct: 313 ALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPL 372 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 VD Q G LL RI++IR++ A EMGF+ P V IRDN+ L Y +++K V + +G +P Sbjct: 373 VDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFP 432 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 ++L +NP + G T +PAFGL A W++ +K+ A+++GYT+V+ STV+ATHL Sbjct: 433 EKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTE 492 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 +I ++A EL GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR++ Sbjct: 493 IIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNL 552 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 +T++E LA +P L VR+ L R IT+ ++V L + +E++L +L Sbjct: 553 QTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSL 612 Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 Q ++P LA ++L+ + G PP+++++ +R + RF+ + +P + Sbjct: 613 QNTDDGQEIVIDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFVEKFVPNV 672 Query: 670 VVLSNLELSDNRHIRMTATI 689 ++S+ E+S++ I + Sbjct: 673 NIMSHNEISESVRIESLGML 692 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 270/685 (39%), Positives = 406/685 (59%), Gaps = 10/685 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + + +A + + L+L+++ +PLP ILD +++LS+++L+VA++ + L+F +FP Sbjct: 19 GLKNRDIAFAVGVTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFP 78 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 T+LL T+LRL+LNVASTR+IL EGHTG AAG V+E F F+V GNF IGIV+F ILV+ Sbjct: 79 TLLLVVTMLRLSLNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVV 138 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 INF+VITKG+ RIAEV ARF LD MPGKQMAIDADL AGLI E EAK RR + E+ F+ Sbjct: 139 INFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFF 198 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFVRGDA+AGI+I +IN++GG+L+GV+Q+ +S+ AA SYT LTIGDGLV Q+ Sbjct: 199 GAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQV 258 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PAL++S AAG+IVT+ T+ E ++ QL P + ++A +L +GL+PG P +VF Sbjct: 259 PALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFA 318 Query: 316 FTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 + GL W+I +E++ + + K E T D L +E+G L+ Sbjct: 319 LGGLMAGLGWYIGQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALV 378 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 P++ D L G+I+S+R FA+E GF+ P V I D L Y +L++GVE+ G+ Sbjct: 379 PLMSAA-DAALPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEV 437 Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 P + +NP + GEA DP FGL+A+WI+ +A+ QGYTVV+ +V+ THL Sbjct: 438 RPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHL 497 Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 ++ +H +L Q L++ + ++ KL + + G + VLQ LL E+V +R Sbjct: 498 TEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVR 556 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612 ++ I+E +AE S+ + VR L I + + VI L ++ + Sbjct: 557 NLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVD 616 Query: 613 ALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 +++ G + P + + + P +LV+ R + L R P Sbjct: 617 SIRMNGDDKTLIMSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSP 676 Query: 668 QLVVLSNLELSDNRHIRMTATIGGK 692 V+S+ E+ N ++R ATIG + Sbjct: 677 MTQVISHNEVHRNANLRTLATIGRE 701 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 774 bits (1999), Expect = 0.0, Method: Composition-based stats. Identities = 252/681 (37%), Positives = 417/681 (61%), Gaps = 12/681 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + I+ + +++P+PA +LD L NI++S+++L A+F+Q L + FPTI Sbjct: 2 KKTDLGIGLFIISSIIFLIVPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTI 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LLFTT+ R++LNV+ST++IL G+ G VV FG F+ + IG++VF+IL+II Sbjct: 62 LLFTTVFRISLNVSSTKLILSSGNP-----GAVVTQFGRFVGQDDVIIGVIVFIILIIIQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VI KG+ R++EV ARF LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+ Sbjct: 117 FIVINKGSERVSEVTARFTLDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA+K+V+GDA+AG++I V+N++GG ++G+++ G+ G A Y +LTIGDGLV+QIP+ Sbjct: 177 MDGATKYVKGDAVAGLIITVVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPS 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IS A G++VT+VS + D+G+ ++ QLFS P V+ + L LG+V +P +VF + Sbjct: 237 LMISLATGIVVTKVSKEADIGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYG 296 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375 A + I R + A E + ++ + N V D + +E GY +IP+ Sbjct: 297 AMFIFCGRVIDKRVKIASIEEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLA 356 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL R+ IR++ A E+G + P + +RDN+ L P +Y I +KG+ + G+ Sbjct: 357 DVNQGGDLLDRVVLIRRQIALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFD 416 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 ++A+NPG + G T +P+F L A+WI + +E+A+ GYTVV+ +++ATHL + Sbjct: 417 HYMAMNPGYVEEEITGIPTFEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEV 476 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I H EL RQ+ Q L+ + + L +LVP ++ + + KVLQNLL E + IRD+ Sbjct: 477 IRGHLDELLTRQDVQNLITNITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLV 536 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 TI ETLA++AP D LT VR +L RAI+ ++F + V+ LD +E+ ++ +++ Sbjct: 537 TIFETLADYAPTTRDTDVLTEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVK 596 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 ++P ++ ++ + + E LG P+++ + +R + + L+ Sbjct: 597 QTEQGAFLAIDPEKTQSIMKSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLI 656 Query: 671 VLSNLELSDNRHIRMTATIGG 691 V+S E+ N ++ + Sbjct: 657 VISYNEIESNVELQSVGMVTA 677 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 407/700 (58%), Positives = 523/700 (74%), Gaps = 9/700 (1%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+N+ ++ + + ++Q L+GP+LIL+ILSMMVLPL FILDL FTFNIALSI+VLL Sbjct: 1 MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG Sbjct: 61 MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE + Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+ AA+ Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS VLG Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357 +LGLVPGMPN++FL+FT L ++W I +K +N + +A+WNDV Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360 Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 QLE S+ +E+G LIPM+ + LL +IR++RKK A+ +GFLPP+VHIRDN +L Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420 Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474 Y IL+KG+EI G G++LAIN G A+G LP E T DP F + WI S L QA Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + +GY + E STV++THLNH+I H + LFGRQEAQQLLD V++ PKL EDL+P + L Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPG 593 T H+VLQNLL E VPIRDM+TILETL HAP D LT++VR++LG+ I Q F Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIF-Q 599 Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 +++ VI D+ LE++LL+ + LEPGL + ++ + Q+ + ++ P VLLV+H Sbjct: 600 NNKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 LR +++ L +++P++ VLSNLEL D I T IG + Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 763 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 292/684 (42%), Positives = 449/684 (65%), Gaps = 8/684 (1%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 K + ILIL IL+ M+LP+P F LDLL T +I S+++L+ ++ LE A Sbjct: 9 FSKVHEHSDAIIIILILAILASMILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIA 68 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FP++LL TL RLALN+A+TR IL+ GH G AAGK++E+FG F+VGGN+ +GI++FVI Sbjct: 69 SFPSLLLLATLFRLALNIATTRRILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVI 128 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 LV INF+V+TKG RI+EVGARF LD MPGKQMAIDADLNAGLI E EA++RR + +EA Sbjct: 129 LVTINFIVVTKGTERISEVGARFTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEA 188 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYG+MDGASKF+RGDAIAGI+I INI+GG+ +GVLQHGM + AA ++TLLT+GDGLV Sbjct: 189 DFYGAMDGASKFIRGDAIAGIIITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLV 248 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +QIP+L+ STAAG++VTR ++ ++G+++ +QL S P + ++A L ++G VPGMP + Sbjct: 249 SQIPSLITSTAAGLMVTRAVSETNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIP 308 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE--NNTVVEATWNDVQLEDSLGMEVGYR 370 F + + A+ ++ ++ E + ++ E V E+ + +++ E+GY Sbjct: 309 FTILAGMIALTAYMMQLEMKRETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYG 368 Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430 LIP+VD ++ GELL RI+S+RK+ ++E+G + P++HI+DN++L+ YRIL+KGVE+ Sbjct: 369 LIPLVDEEKGGELLKRIKSLRKQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARY 428 Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 PG+ LAI+ G G L G T +P FGL A WI+ + K++A++ G+TVV+ TV+ T Sbjct: 429 QIEPGKMLAIDTGQTNGKLEGVETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIIT 488 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 HL+ +I Q+A E+ GR E ++L+D++ Q+ P + +++VP V LH+VLQNLL E +P Sbjct: 489 HLSEIIKQNAHEILGRSETKELVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIP 547 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610 I+D+ TI+E+L+++ D LT +VR +L R IT + ++ + LD E L Sbjct: 548 IKDLLTIIESLSDNITKTEDTDILTELVRESLARLITSIYA-KDGVLYALTLDPASEEKL 606 Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 ++ G ++P + Q + + + + PVLL + +R + + + + Sbjct: 607 YAKIKEYNGNLPPIDPAKLQSFIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYM 666 Query: 667 PQLVVLSNLELSDNRHIRMTATIG 690 + VLS E+ +++ + Sbjct: 667 SNVAVLSYNEVDPKTKLKIIDKVS 690 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 289/677 (42%), Positives = 425/677 (62%), Gaps = 15/677 (2%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + ++ I+ ++++P+P I+D L NI LSI++LL M+ + L+F+ FP+I Sbjct: 2 KASELTVALFVVGIVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSI 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TTLLRLALN++STR+IL + AG V++AFG F++GGN +G ++F+I+ I+ Sbjct: 62 LLITTLLRLALNISSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VIT+GA R++EV ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+ Sbjct: 117 FIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIA I+I++INIV GL++G++ GM + A +Y +LT+GDGLV+QIPA Sbjct: 177 MDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPA 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+ISTA G+IVTR +++ ++G ++ QLF+ P ++ ++A +L L LVP +P L +L Sbjct: 237 LLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIG 296 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377 + L + + E + N ++ D + +E GY LIP+ Sbjct: 297 SLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKKVYELLQVDPIELEFGYELIPLAS- 355 Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437 GELL RI IR++ A ++G + P++ +RDN+ L+P Y I ++G EI G Y R+ Sbjct: 356 ---GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRY 412 Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 +A+ G + G +PAFGL AIW++ + +A+ +GYTVV+ +V+ATHL H+I Sbjct: 413 MAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIK 472 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 QHA EL GRQE Q L+D V P L E+LVP ++T+ + KVL NLL E + IRD+ TI Sbjct: 473 QHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTI 532 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 LETLA++API D LT VR AL R I+ ++ P ++ VI LD +E+L+ ++ Sbjct: 533 LETLADYAPIIRDTDVLTEYVRQALARTISNKYAPY-GKIEVITLDPSVEQLISSSITQT 591 Query: 618 G-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 LEP A R+L E + + G PV+L R L + + + P + VL Sbjct: 592 EHGSYLALEPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVL 651 Query: 673 SNLELSDNRHIRMTATI 689 S EL N + T+ Sbjct: 652 SYNELLPNIEVASVETV 668 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 255/681 (37%), Positives = 421/681 (61%), Gaps = 12/681 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L I +L + ++ +P+++LD+L NI ++++VL ++F + L+ A+FPT+ Sbjct: 4 KKNDLFIGIYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTM 63 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LLFTT+ R++LNV+ST++IL G+ AGKVV+ FG F+ GN IGI++F+IL+II Sbjct: 64 LLFTTIFRISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQ 118 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VI KG+ R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE F+GS Sbjct: 119 FIVINKGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGS 178 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGA+K+V+GDA AG++I IN++GG+++G+ G+++ A YT+LTIGDGL +QIP+ Sbjct: 179 MDGATKYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPS 238 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+IS A GV+VT+ S++ ++G++++ QLFS V+L+ A L LLG+ +P +F+ Sbjct: 239 LLISLATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLG 298 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375 L+ + + + E + + + N V D + +E GY +IP+ Sbjct: 299 MALIIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLA 358 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL R+ IR++ A E+G + P++ +RDN+ L P +Y I +KG+++ G+ Sbjct: 359 DVNQGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFD 418 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 ++A+NPG + G T +P+F L AIWI + +E+A+ GYTVV+ +++ATHL + Sbjct: 419 HYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEV 478 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I QH AEL RQ+ Q L++ + L E+LVP ++ + + KVLQNLL+E + IRD+ Sbjct: 479 IRQHIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLV 538 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 TI ETLA+HA + DP LT VR AL RAI+ ++F + +V+ +D +E+ ++ +++ Sbjct: 539 TIFETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVK 598 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 L+P + +++ L + E +G P+++ + +R + ++ Sbjct: 599 NTEQGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDII 658 Query: 671 VLSNLELSDNRHIRMTATIGG 691 V+S E+ N ++ + Sbjct: 659 VISYNEVESNVELQSVGMVTA 679 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 760 bits (1964), Expect = 0.0, Method: Composition-based stats. Identities = 298/681 (43%), Positives = 449/681 (65%), Gaps = 7/681 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + I +L +L +M++PLP +++D++ NI + +++LL A++ + LEF+ F Sbjct: 11 RIGKQPDILLAISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVF 70 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RL+LNVA+TR+IL+ G G AAAG V+E FG F+VGGN +G+++F+ILV Sbjct: 71 PSLLLLTTLFRLSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILV 130 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 +INF+VI+KG+ RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR V +EA+F Sbjct: 131 LINFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEF 190 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGASKFVRGDA+AG++I VIN+VGGL++GV+QHGMS+ A ++LLT+GDGLV+Q Sbjct: 191 YGAMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQ 250 Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 IPALVISTAAG+I+TR S+++ + ++ Q ++P V ++A L L+ LVPG+P + FL Sbjct: 251 IPALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFL 310 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-NNTVVEATWNDVQLEDSLGMEVGYRLIP 373 + + GL ++++ +Q+ E + + E +D+ +ED + +E+GY LI Sbjct: 311 ILSLGLGASGYYLQLGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLID 370 Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433 MV+ ++G LL R++ +R++ QE+GF+ P VHI+DN+ L + Y+IL++G +G G+ Sbjct: 371 MVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIR 430 Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493 P LA+ + + G AT +PAFGL A+WI ++QA++ GYTVVE +TV+ THL Sbjct: 431 PRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLT 490 Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553 L+ AAE+ R + LL++ AQ PK+ E++VP V + L VLQ LL E VPIRD Sbjct: 491 ELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRD 550 Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ- 612 + ILE L++HA +L VR LGR ITQ++ + E+ V LD LE+ + + Sbjct: 551 LMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSER 610 Query: 613 -ALQGGGGLEPGLA--DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669 + Q G L + R +++ E S ++ PVLL LR L+R LR+ + ++ Sbjct: 611 MSQQQGWALPLDMPEWQRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTRALRKVMTRI 668 Query: 670 VVLSNLELSDNRHIRMTATIG 690 VLS E+ +I+ A + Sbjct: 669 AVLSIAEIPPQTNIQSLAKVS 689 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 283/688 (41%), Positives = 447/688 (64%), Gaps = 15/688 (2%) Query: 11 PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70 A K +A I ++ I ++++P+P FI+DLL T NI+L +++LLV++ + L+ Sbjct: 12 NAFFKYLFKGDMALIIGVISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALD 71 Query: 71 FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130 ++FP+ILLF TL RLALNVASTR IL++G+ GKV+ AFG F+VGGN +G+VVF Sbjct: 72 LSSFPSILLFMTLFRLALNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVF 126 Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 +I+V+I F+VITKGA RI EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++ Sbjct: 127 LIIVVIQFIVITKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSR 186 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 EA+FYG+MDGA KFV GDA+AGI+I++INI+GG+++G+ + GMS+ A + YTLLT+GDG Sbjct: 187 EAEFYGAMDGAGKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDG 245 Query: 251 LVAQIPALVISTAAGVIVTR-VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 LV+QIP+ +I+TA+ VIVT+ +T +++G + QLFS P+ + + +L L +VPG+P Sbjct: 246 LVSQIPSFIIATASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLP 305 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEP---KPVKMAENNTVVEATWNDVQLEDSLGME 366 + FL+ + + +R ++ K + E + + D + +E Sbjct: 306 KIPFLVLAGFFWMMFFVLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELE 365 Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426 VGY+L+P+VD ++G +L RI ++R + A++MG + P + +RDN+ L+ +Y + ++G E Sbjct: 366 VGYKLVPLVDPNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQE 425 Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486 I G+ G +LAI+ G + G T+DPA+GL A+WI A+KE A+ GYTVV+ ++ Sbjct: 426 IAHGELLTGSYLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPAS 485 Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546 V+ THL +I HA E+ R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL Sbjct: 486 VMITHLTEIIKTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLK 545 Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606 E+VPIRD+ +ILET+A++AP D +LT VR L R I +++ + ++ VI D L Sbjct: 546 EQVPIRDLSSILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHL 605 Query: 607 ERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661 E+ + A+ L+P +A +++ + E + G VLL + ++R + R Sbjct: 606 EQTIANAIHKTEKGNLLALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRL 665 Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +LPQL VLS E+S I + Sbjct: 666 IENALPQLAVLSYKEISPGVMIDSVGVV 693 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 758 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 300/698 (42%), Positives = 441/698 (63%), Gaps = 16/698 (2%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 + L + L P++IL IL+M++LPLP +LD+LFTFNI L++MVLLVA+ + Sbjct: 2 AKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAK 61 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 R LEF+ FPTILL TTL+RL LNVASTR++L+ GH GA AAGKV+E+FG ++GGNF +G Sbjct: 62 RPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVG 121 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 VVF+IL+IINF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR Sbjct: 122 FVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRK 181 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 +V EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+T Sbjct: 182 DVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMT 241 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306 IGDGLVAQIP+L++STAA +IVTRVS + D+ + +QL ++PSV+ + ++ +L +VP Sbjct: 242 IGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVP 301 Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA----ENNTVVEATWNDVQLEDS 362 GMP+L FLLF+A L W + R Q A AE K ++ + + +W + L + Sbjct: 302 GMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 361 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + + +GY+L+ +VD Q L RIR +R+ + G L P + IR+N L+P++Y I + Sbjct: 362 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 421 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 G++ D + +A+ G + G DPA+G+ WI+ A K +A GY V+ Sbjct: 422 NGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVI 481 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 ++++V+ATH+N ++ + +LF + QL +R++ P+L EDL + + L KV + Sbjct: 482 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYR 540 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E V +RD+ TI L + + D L A VR+AL R+IT + K E+ V L Sbjct: 541 ALLTEGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 599 Query: 603 DTPLERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 + LE LL QA Q G + +P + ++ + + + + G PVLLV Sbjct: 600 NNELENLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPP 659 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 LRPLL+R+ R P L VLS E+ D +++ + Sbjct: 660 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALS 697 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 254/692 (36%), Positives = 409/692 (59%), Gaps = 16/692 (2%) Query: 9 RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68 + A + L++ I+ ++++PLP +LD+ N+ ++I +LL+ +FT+ Sbjct: 4 KAKAKKGGLTPAEIVISFLVIGIVGLIIIPLPTSLLDIFIVTNLTVAINILLITLFTKSV 63 Query: 69 LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128 LEF+ FPT+LL TT+ +L LN++STR IL G+ G V+EAF + G N+ +GI+ Sbjct: 64 LEFSTFPTVLLITTMFKLGLNMSSTRSILTTGN-----GGHVIEAFADVVAGENYIVGII 118 Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188 +FVI++I+ +V+T G+GR++EV ARF LD MPGKQMAID+DLN+G I E++A++RR ++ Sbjct: 119 LFVIIMIVQLVVVTNGSGRVSEVSARFTLDAMPGKQMAIDSDLNSGAITEEQARQRRKDL 178 Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248 +EADFYGSMDGASKFV+GDAIAGI+I+++N++GG ++ + +S+ A + L IG Sbjct: 179 QREADFYGSMDGASKFVKGDAIAGIIIVLVNLIGGTIIFTAKGDLSITDALSQFGKLAIG 238 Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 DGLV+ +P+L+IS A GVIVTR + G + + NP + + +L +L LVPG Sbjct: 239 DGLVSSVPSLLISLATGVIVTRSEDNSTFGTDIASDALRNPQLFKVVGVILLVLALVPGF 298 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA---ENNTVVEATWNDVQ--LEDSL 363 P + F++ + + ++ +E++ E + + + +DV + L Sbjct: 299 PKIPFIVLSLAMFAANVLVKQKEEQRIKERIKEEQTLALQRKKEEQEEDDDVASFQVEPL 358 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 +E+GY LIP+VD D L+ RI +IR++ A E+G L V IRDN+ L Y I ++ Sbjct: 359 SIEIGYGLIPLVDSTIDNSLMNRISAIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIR 418 Query: 424 GVEIGSGDAYPGRWLAIN-PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 G E+G GD YP +++ I+ + G T +PAF L+A+WI+ KE A +QG+TV+ Sbjct: 419 GNEVGHGDIYPDKYMIISQSDDGSFPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVI 478 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 E TV+ATHL +I HA EL GRQE Q+LL+ + + ++L+P ++ L + KVLQ Sbjct: 479 EPLTVIATHLKEIIHAHAPELLGRQEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQ 538 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 NLL+E VPI D+ TILETLA++ + D LT VR L R I ++ D ++V+ + Sbjct: 539 NLLEENVPINDLSTILETLADYGTVTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTI 598 Query: 603 DTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 +E ++ Q++Q ++P +++L + + V+L + +R Sbjct: 599 HPKVEEMVSQSIQKTATGSYPVMKPDSVNKILTAIGDISQQMAAQNMNYVILTSPKIRLA 658 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + + + P + VLS E+ + I I Sbjct: 659 FRKLIAFNFPDVAVLSLNEIPNEIAIESIGNI 690 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 278/683 (40%), Positives = 429/683 (62%), Gaps = 9/683 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + +Q + L P+ I+ + ++++P+P+ ++DLL NI +S++VLL ++ + LEF F Sbjct: 3 RLSQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIF 62 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 PT+LL TTL RL LNVASTR+IL T G AAG V+ AFG F+ G +GI+VFVI+ Sbjct: 63 PTMLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVII 122 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 V+I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+AD Sbjct: 123 VVIQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQAD 182 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 F+G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M + +AE +T L+IGDGLV+ Sbjct: 183 FFGAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVS 242 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 Q+PA + S AAG++ TR S Q++ + QLFSNP ++++ + +L ++ +P + Sbjct: 243 QVPAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPL 301 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT--VVEATWNDVQLEDSLGMEVGYRL 371 L AG GLA + +++ A+ A E D D + +E+G L Sbjct: 302 LAIGAGCGGLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 I + + +Q G+LL RI ++R+ A ++G + P V ++D L +YRI + G + +G+ Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 PG++LAI+ G G +PG T DPAF A+WI+S L+E+AQ+ GYT VE + V+ATH Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L ++ +HA EL R + LLD + + P + ++LVP + ++ + +VLQ LL E+V I Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 R++ TILETL + A DP LT VR L R I+ ++ ++ +HV+ LD LE + Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 ++ L+P + +R+ + L++ G P++LV+ +R L +L Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661 Query: 667 PQLVVLSNLELSDNRHIRMTATI 689 P+L VLS E++ + + + + Sbjct: 662 PRLHVLSFNEVTRDTKVDILGVV 684 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 288/687 (41%), Positives = 436/687 (63%), Gaps = 14/687 (2%) Query: 9 RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68 +++ + L P ++ I+ MMV+PLP +LD+L NI +++VLLV+MF +R Sbjct: 24 TRRGGVRAKRLGELGIPAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRP 83 Query: 69 LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128 L+FAAFP++LL TL RLALN++ TR++L+ G+ AGKVV++FGHF+VGG+ +G+V Sbjct: 84 LDFAAFPSLLLIATLFRLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLV 138 Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188 +F+I++II F+VIT GAGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+ Sbjct: 139 IFLIILIIQFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEI 198 Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248 EADFYG+MDGASKFV+GDAIA ++I +N++GGL +G+LQ +S+G A +Y+LL++G Sbjct: 199 AAEADFYGAMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVG 258 Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 DGLV+QIPAL++S + G+IVTR +++ D+G ++ Q+ S + + A + ++ L+PG+ Sbjct: 259 DGLVSQIPALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGL 318 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 P L FL+ L L ++ + A +P A EA ++ + L + + Sbjct: 319 PKLPFLILGGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEM-RVEPLELNLA 377 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 + L+ +VD + GELL R+R++R+K A E+G + P+V RDN+DL P Y I + GVE+ Sbjct: 378 FDLVDLVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVA 437 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 G+A PG LAI G LPG AT++P FGL W+ L++QA++ G TVV+ ++V+ Sbjct: 438 RGEAPPGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVI 495 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 THL ++ +AA+L R++ + L + + P + E+L P ++ L + +VLQ LLDE Sbjct: 496 TTHLAEVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEH 555 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 VPIRD+ I E L++ A + DP L R LG AI+ + + V+ +D E+ Sbjct: 556 VPIRDLPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYA-QDGRLSVLTIDPLTEQ 614 Query: 609 LLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 L+ L+ G L+P A+ L+ + + R E LG PVL LRP L R +R Sbjct: 615 RLVDKLRHGEHGSFLALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVR 674 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIG 690 + P+L VL+ EL + + T+ Sbjct: 675 SANPRLPVLAYGELGPHLQLETVGTVS 701 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 283/679 (41%), Positives = 428/679 (63%), Gaps = 12/679 (1%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L+ I ++LI++M+V+P P ++L +L NI+L+++VLL M Q L+F+ FP++ Sbjct: 2 STRDLSVLISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSL 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RL LNV++TR IL G GKVVE FG+F+VGGN +G+VVF+IL+II Sbjct: 62 LLLLTLFRLGLNVSTTRSILSHG-----EGGKVVETFGNFVVGGNVLVGLVVFIILIIIQ 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGA R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+ Sbjct: 117 FIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFV+GDAIAGI+I++INI+ G+++G+LQ GMS+ AA +T+LT+GDG+V+QIPA Sbjct: 177 MDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPA 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L+ISTA G++VTR +++ ++G + QLF+ P ++ ++AA + LLG+ + L+ Sbjct: 237 LLISTATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLA 296 Query: 318 AGLLGLAWWIRG--REQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375 L A+ + +E++ E + + + + D + E GY LIP+ Sbjct: 297 GLLAFGAYTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLA 356 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D Q G+LL RI IR++ A E+G + PVV IRDN+ LQP YR+ +KG E+ G+ Sbjct: 357 DANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLD 416 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 +LA++P + G TV+P+FGL A WI A+K++A + GYTVV+ ++VV+TH+ Sbjct: 417 HYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEK 476 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I QHA EL GRQE +QL+D + + P L E++ P +++ + KVL LL EKV IR++ Sbjct: 477 IKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 536 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 TI ETLA++ + +D LT R AL + IT Q+ + + V+ +E+ + +Q Sbjct: 537 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQ 596 Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 LEP +++ ++ + + + +LL + +R + + L R P L Sbjct: 597 QTEHGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLP 656 Query: 671 VLSNLELSDNRHIRMTATI 689 VLS EL N ++ + Sbjct: 657 VLSYNELEANVEVQSIGVV 675 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 743 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 286/675 (42%), Positives = 447/675 (66%), Gaps = 4/675 (0%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + + + ++LILS +++P+PA +LDLL T +I S+ VLL+ F + LEF++FP++ Sbjct: 2 RGKEFWIILAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSV 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TLLRL+LN+A+ R IL+ GH G AAGKV+EAFG + GG+ +G++VF+I ++IN Sbjct: 62 LLLGTLLRLSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVIN 121 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGA RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY + Sbjct: 122 FIVITKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAA 181 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKF+RGDAIA ++I+ +++VGGLL+G+ GM + A ++YT+L+IG+GL +Q+PA Sbjct: 182 MDGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPA 241 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 L++STAAGV+ T++S+ +++GE + +L P +L SA VLG +GL+PG+P L FL + Sbjct: 242 LLLSTAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMS 301 Query: 318 AGLLGLAWWIRGREQKAPAEP-KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376 A L G + ++ ++ + + + + E + + + +E+GY LIP+VD Sbjct: 302 AILAGAYYLVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVD 361 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436 Q G++ +I+++RK+ A+E G + P++HIRDN+ L+P YRIL+KG+EI + PG Sbjct: 362 ESQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGH 421 Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496 +LA+N G A G + G T DPAF + A WI KE+AQ GY VV+A TV+ THL+ +I Sbjct: 422 YLAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVI 481 Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556 ++ EL R E +L++ ++++ PK+ +++VP V ++ +H+VLQNLL E +P+ D+ T Sbjct: 482 KRNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLT 541 Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616 ILETLA++ DP LT VR AL + IT+ + ++ I L +E L++ L+ Sbjct: 542 ILETLADYIEQTKDPDLLTEYVRQALSKRITRMYL-TNGTLYAIALSPKVEAKLVKFLKE 600 Query: 617 GGGLEPG--LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 E + + LL + + + + GA PVLL + +R + + + L +L VLS Sbjct: 601 NREDEFIDYVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSY 660 Query: 675 LELSDNRHIRMTATI 689 EL +I++ + Sbjct: 661 NELEKQVNIKIIGIV 675 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 283/702 (40%), Positives = 436/702 (62%), Gaps = 28/702 (3%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N + + ILI+ I+ +MV+P+P F+LD L NI +SI++LL ++ +R L+ + Sbjct: 2 NFTRIKGLDVIISILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDIS 61 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FP++LL T+ RLALNV+STR+IL+ G GKV+ AFG F+VGGN+ +GI++F+I Sbjct: 62 IFPSLLLVMTIFRLALNVSSTRLILLNGK---NFEGKVIRAFGDFVVGGNYIVGIIIFLI 118 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 LVII F+VITKG RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EA Sbjct: 119 LVIIQFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREA 178 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYG+MDGASKFVRGDAIAG++I +IN+VGGL++G+LQ G+++ AAE + LLT+GDGLV Sbjct: 179 DFYGAMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLV 238 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 AQIPAL+IST+AG+IV+R ++ + G ++ QL S+ V+ ++ ++ +LGL+ +P Sbjct: 239 AQIPALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFP 298 Query: 313 FLLFTAGLLGLAWWIRGREQK--------------APAEPKPVKM-----AENNTVVEAT 353 L+ AGLL +A+ R E + A PK K Sbjct: 299 SLILGAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEE 358 Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 ++V D++ +++GY LIP+ D Q G+LL RI +RK+ A E+G + + IRD++ L Sbjct: 359 VSEVLQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLL 418 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 Y I ++GVE+G + P R LAIN G A LPG T +PAFGL A WI+ +LKE+ Sbjct: 419 SSNEYVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEE 478 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 A +GYT V+A +V ATHL+ I ++A E+ G +E + L+D + L + L+P ++ Sbjct: 479 AIEKGYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLK 538 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFP 592 + L KVL LL E+V IR++ I E+L E A ++ L VR +LGR I + Sbjct: 539 MHELKKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKS 598 Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV 647 E+HV LD +E+ L ++++ LEP ++ L+ + ++L M G P+ Sbjct: 599 DDGELHVSALDPTIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPI 658 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 L+ + +R +RF + + + +++ E+ + + + + Sbjct: 659 LICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 299/692 (43%), Positives = 424/692 (61%), Gaps = 13/692 (1%) Query: 5 AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64 +A L +PAN + +A ++++L ++++V+PLP +LDL +I LS++VLLV++ Sbjct: 3 SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62 Query: 65 TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124 T L+F++FP +LL TL R+ L+V+STR+IL E H AGKV+EAFG F++GGN+A Sbjct: 63 TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117 Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184 +GIV+F+IL INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177 Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244 R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+ Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237 Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 LT+GDGLV Q+PAL+ISTAAG++VT + + +G + QL ++P M ++A VLG L Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP--KPVKMAENNTVVEATWNDVQLEDS 362 +PG+P FL AG LA E + E D+ D Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQIDP 357 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + +EVGY LIP++D Q G+LL RI +RK+ A E+G L P + IRD++ L Y I + Sbjct: 358 IELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKL 417 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 +G E+ + P +A+N G+ + G TVDP+FG+ A W+ SA + +A+ GY VV Sbjct: 418 RGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVV 477 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 E +TVVATHL + A+EL GRQE Q++++ + + P L E+++PG V+L+ LH+VLQ Sbjct: 478 EPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQ 537 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E+VPIRD+ TILE L + A DP LT V R AL I + + V I + Sbjct: 538 RLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITI 597 Query: 603 DTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 LE L + L P +L + + G P L+ +LR Sbjct: 598 GGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLRV 657 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688 + R + LP L V+S EL + T Sbjct: 658 GVRRLIEPVLPSLPVISLAELPAQITLSSVTT 689 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 223/699 (31%), Positives = 388/699 (55%), Gaps = 31/699 (4%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + + +L+L ++ MMVLPLP +LD+L N+ +S+++L++A++ L+F+AF Sbjct: 11 RIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAF 70 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P +LL TTL RLAL+V++TR+IL++ A AG++V FG+F+VGGN +GIV+F+I+ Sbjct: 71 PAVLLVTTLFRLALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIIT 125 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ F+VITKG+ R+AEV ARF LD MPGKQM+ID D+ AG+I +EA++RR+ + +E+ Sbjct: 126 IVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQM 185 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 +GSMDGA KFV+GDAIAG++I+ +NI+GG+ +GV Q G++ A + Y++LT+GDG+V+Q Sbjct: 186 FGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQ 245 Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +PAL+I+ AG+IVTRVS++ D+G + Q+ + P ML+ +L L GL+PG P + Sbjct: 246 VPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVT 305 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPK-----------PVKMAENNTVVEATWNDVQLED 361 FL+ + + + ++ + + A + ++ Sbjct: 306 FLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGRLGEQE 365 Query: 362 SLGMEVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 + M V LI + QQ+ L + +R+ ++G P +H+R N + Sbjct: 366 AFAMTV-PLLIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEGE 424 Query: 418 YRILMKGVEIGSGDAYPGRWLAIN--PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 Y I ++ V + G+ G L +P E W+ +E+ + Sbjct: 425 YLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERLE 484 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 S V+ HL+H++ ++A + G QE + LL+++ +L ++ V +V L Sbjct: 485 KSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPLQ 543 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 + ++LQ L+ E + IR+MR+ILE + E + D +LT +R +L R I ++ G + Sbjct: 544 RMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGNN 603 Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650 + D +E + A++ L+P + + LL Q ++ + + + PVL+V Sbjct: 604 ILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLIV 663 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +R + + + L VLS EL+ +I+ + Sbjct: 664 SMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 276/633 (43%), Positives = 397/633 (62%), Gaps = 7/633 (1%) Query: 57 MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116 ++LLV +FT L+F+ FPT+LL TL RLAL VA+TR+IL G A+AG V+ AFG Sbjct: 54 VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108 Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176 F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168 Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236 E EA++RR + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++ GM + Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228 Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296 A +YTLLTIG+GLV QIPAL++ST+AGV+VTR + G + QL + P ++ ++A Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND 356 A+ LLGLVPG+P+L+ L L +++ +K P + Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348 Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416 + L +E+GY L+P+ +Q G+LL R+ ++R++ A E+G + IRDN+ L P Sbjct: 349 YFQVEPLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPPN 408 Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQI 476 Y ++G+E G+ PG +LA++P L G AT +P FGL A WI A KE+A+ Sbjct: 409 VYLFRLRGIEAARGELMPGYYLAVSPMGE-AKLEGIATKEPVFGLPAWWISPADKEKAEA 467 Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536 G+TVVE S V+ATHL+ I Q+A L GRQE ++LLD + ++ P L E+LVPG++ L Sbjct: 468 AGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLGE 527 Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596 + KVLQ LL+E+VPI+D+ +ILE LA+ A + DP L R AL R ITQQ+ ++ Sbjct: 528 VQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYA-RDNK 586 Query: 597 VHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 + V+ L E L QA + G LEP RLL + +A+ G PV+L R Sbjct: 587 LSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGARL 646 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LL R + PQ+ V+S E+ + T+ Sbjct: 647 LLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 278/699 (39%), Positives = 417/699 (59%), Gaps = 32/699 (4%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 + L + + + +++LP+P +LD F NI LS++VLL ++ + EF++FPT+ Sbjct: 2 KRADLVLTAGLFITVLLLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTL 61 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 LL TL RLALN++STR++L++G+ AG+V++AFGHF++ GN+ +G VVF+ILV+IN Sbjct: 62 LLALTLFRLALNISSTRLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVIN 116 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGAGRIAEV ARF LD +PGKQMAIDA+LNAG+I E +A RR +V +EADFYG+ Sbjct: 117 FVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGA 176 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 MDGASKFVRGDAIAGI+I ++N++GG +GVLQ G+S+G + + +TLL+IGDGLV+QIP+ Sbjct: 177 MDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPS 236 Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 LV+S AAGV+VTR S + ++G Q+ Q+F P M ++A +L G++PGMP L F Sbjct: 237 LVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPFAGLA 296 Query: 318 AGLLGLAWWIRGREQKA----------------------PAEPKPVKMAENNTVVEATWN 355 A L ++ +E K A A + Sbjct: 297 AFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVR 356 Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415 + D +E+GY L+ + + + G+LL R+ +RK A+E G + P V +RDN++L+P Sbjct: 357 KLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEP 416 Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475 YR L++G + G +P RWLA+N + L G T +P F L A WI+ K+ A+ Sbjct: 417 NDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAE 476 Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535 I GYTVV+ ++V+ THL+ + +A L GRQE Q L+D + Q P L +L+P +VTL Sbjct: 477 INGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLG 536 Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595 + +VLQNLL E + I ++ ILE + + A + +P +L+ ++R LG ++ Sbjct: 537 IIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPG 596 Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650 V + +D E+ L +Q L+P +L + ++ G P VL+V Sbjct: 597 VVRAVTVDPRFEQWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVV 656 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + +R L RF S P+L VL+ EL I + Sbjct: 657 SSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 292/726 (40%), Positives = 431/726 (59%), Gaps = 40/726 (5%) Query: 2 SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 S LA P + Q + LA + ++ IL+++++PLP F+LD L T +IALS++++L+ Sbjct: 6 SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 ++ + +F+AFPT+LL TL RLALNVA+TR+IL +G+ G +A ++ AFG F V G Sbjct: 66 GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q MS+ +A + Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +T+LTIGDGLV QIPAL+I+TA G++ TR + ++D +++ QL + +++ A L Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRG-----------------------------R 330 L +PG+P L +AW I + Sbjct: 306 LLFATIPGLPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSK 365 Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390 + K E E ++V + L + +GY+LI + D +Q G+LL RIR I Sbjct: 366 IKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGI 425 Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450 RKK A + GFL P + IRDN+ L P Y I +KG+ IG G P ++LA+N G + Sbjct: 426 RKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIE 485 Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510 G T +PAFG++A+WI++ KE+A IQGYT+++ STV+ATH + L+ ++A + + E + Sbjct: 486 GIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVK 545 Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQS 569 LL+R+A++ P + E+ + + VLQ LL EK+PI+DM TILET+ + AP +Q+ Sbjct: 546 SLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQN 603 Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624 D + LT VR L R IT + + + T E+ LL L+ G L G Sbjct: 604 DVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE 663 Query: 625 ADRLLAQTQEALSRQEMLGAPPVLL-VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683 +L+ E + G PV+L V LR LS + ++ +VVLS+ EL N + Sbjct: 664 LQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNF 723 Query: 684 RMTATI 689 TI Sbjct: 724 EALGTI 729 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 297/678 (43%), Positives = 428/678 (63%), Gaps = 16/678 (2%) Query: 24 GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83 I+ IL MMV+PLP+++LDL +IALS+ VLL + + +R LEFA FP +LL TTL Sbjct: 1 MAGAIVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTL 60 Query: 84 LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143 RL+LNVASTR+IL G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITK Sbjct: 61 FRLSLNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITK 115 Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203 G RI+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+K Sbjct: 116 GTERISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATK 175 Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263 FVRG+A+AGILI IN+VGGL++GV Q M +G AA ++ LL+IGDGLV+QIPAL++STA Sbjct: 176 FVRGEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTA 235 Query: 264 AGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 AG+IV+R S ++ + +M QL P +L++ LG++G VPG+P + F L +AG+L Sbjct: 236 AGIIVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVLL 295 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEA----TWNDVQLEDSLGMEVGYRLIPMVDFQ 378 L + ++ + E +D+ L D L +E+GY LI +VD Sbjct: 296 LWYLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPD 355 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 Q G+LL R++ +RK+ A+EMG + P V IRDN+D+ +Y I ++G IG G PG L Sbjct: 356 QGGDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKL 415 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A+ P G DP FGL A+W+ +A+ G TV+E V++THL + + Sbjct: 416 ALLPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRK 475 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 +A L RQE +++LD+V + P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TIL Sbjct: 476 NAYRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTIL 535 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 ETLA+HA LT R AL IT+++ + + +D LE+ LL+ + GG Sbjct: 536 ETLADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGG 595 Query: 619 ------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 GL+P AD L+ E + P+LL++ LR + +FL + + VL Sbjct: 596 LDANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVL 655 Query: 673 SNLELSDNRHIRMTATIG 690 S +L+ + + + + Sbjct: 656 SYNDLTPDAPVDIVDQVS 673 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 731 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 288/683 (42%), Positives = 419/683 (61%), Gaps = 10/683 (1%) Query: 12 ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 +L LA P+ +L I+ ++ PLP F+LDLL +I +S+ VL+V+++ R +EF Sbjct: 21 KSLPLDTLGQLAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEF 80 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 +FPT LL TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F+ Sbjct: 81 TSFPTTLLLLTLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFL 140 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 +L+ I ++VI GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR + E Sbjct: 141 VLIAIQYVVINHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATE 200 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 A+FYG+MDGAS+F + DA+A ILI INI+ G L+GV QHGM A E+YT+LTIGDGL Sbjct: 201 AEFYGAMDGASRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGL 260 Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 V IPAL+IS + G+IVTR S++ +G + Q+ N +LL+A VL L +PGMP L Sbjct: 261 VTVIPALMISISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKL 320 Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRL 371 FL+ G W +R E A P + + + + + L +EVG L Sbjct: 321 PFLVLGFGAGAGGWRMRKTELAQIAAP--PEDTGKPAPAKDSVESLLRVEPLAIEVGLGL 378 Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 I +V+ Q+ LL RI +IR++ A ++G+L P V + DN+ L+ Y I +KGVEI + Sbjct: 379 IGLVEGAQESPLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYE 438 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 G LAI G A+ L G+AT DPAFG+NA WI + ++A+ GYTVV++ +V+ TH Sbjct: 439 LPQGCELAIATGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTH 498 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L+ +I ++A ELF RQ+A++LLDRV E PK+ ED+VP ++ L+++ +VLQNLL E+V I Sbjct: 499 LSEIIRRYAHELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSI 558 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 RD +ILE L E +P LT VR A+ RA+ + + ++ +D +E + Sbjct: 559 RDAVSILEALGEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVE 618 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 A++ G L P +L + + E P V + + R L + ++ Sbjct: 619 AAVEHGEQNSHIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTM 675 Query: 667 PQLVVLSNLELSDNRHIRMTATI 689 P L L++ E+ ++ I Sbjct: 676 PNLFFLAHNEVPPGVRVQSLGNI 698 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 237/686 (34%), Positives = 392/686 (57%), Gaps = 41/686 (5%) Query: 43 ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102 ++D+ N+A+S+M+L++ M + LE + FP++LL TTL RL +NV++TR IL G Sbjct: 29 MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNILTNG-- 86 Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162 ++G +++AFG F+V GN +G+++++I+V++ F+VITKGA R++EV ARF LD MPG Sbjct: 87 --GSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144 Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222 KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD + ++ IN+VG Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204 Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282 G ++G++Q G + +Y++ T+GDGLV QIP+L+IS + G+IVTR ++ + E + Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP-- 340 Q P M+++ +G+L L+PGMP L L G + +++ R ++ P + Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324 Query: 341 --------------VKMAENNTVVEATWND----------VQLEDSLGMEVGYRLIPMVD 376 E + + D + + + M+ GY LIP+ D Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLAD 384 Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 G L+ RI R+++AQ++GF+ P + +RD+ L Y I +KG EI G+ Sbjct: 385 ESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTD 444 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 LA+ P + G T++PA+G+ + WI +E+A++ GYTV++ +V+ +HL+ Sbjct: 445 YVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSET 504 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 I +HA EL RQE +L++ + + P+L E+ PGV++ L KVL LL E V I+D+ Sbjct: 505 IKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDLE 564 Query: 556 TILETLAEHAPIQ----SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 TI+ET+ E D ++ VR +L R IT+ + + VI LD LER ++ Sbjct: 565 TIVETMFECISETGLPVKDTDQIVEKVRASLKRTITRMYC-EDGNMKVITLDAGLERTMV 623 Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 +L G L P L L+ Q E + L +PP++L + +R + + Sbjct: 624 NSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFY 683 Query: 667 PQLVVLSNLELSDNRHIRMTATIGGK 692 P + VLS E++ N I+ ++ + Sbjct: 684 PNVRVLSFNEVASNVQIQAIGSLRLE 709 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 279/699 (39%), Positives = 426/699 (60%), Gaps = 16/699 (2%) Query: 4 LAAMLRLPANLKSTQWQ------ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57 L+A ++T W+ + + ++++L+++++PLP FILD+ + +I S++ Sbjct: 37 LSAETLRSGGWRATSWRSLVPGTDVGLALGVVVLLAILIIPLPTFILDMGLSLSITSSVL 96 Query: 58 VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117 VL+VA+F +RTL+F +FPT+LL TTLLRL+L +A+TR+IL G G AAG VV AFG F Sbjct: 97 VLMVALFLERTLDFTSFPTLLLLTTLLRLSLEIATTRLILSHGSEGTYAAGHVVAAFGGF 156 Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177 L+GG+ IG +VF IL+++NFMVITKG+GRIAEV ARF LD MPGKQMAIDADL++G I Sbjct: 157 LMGGDLFIGGIVFCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAIN 216 Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237 E A+ +R E+ E+ FYG+MDGA+KFVRGDAIAG++I INIVGGL +G+L+H M + Sbjct: 217 ERTARAKRKELEDESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSE 276 Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAA 297 AA ++T LT+GDGLV+QIPAL++STAAG++VT+ +D +V QL NP + ++ Sbjct: 277 AASTFTTLTVGDGLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGG 336 Query: 298 VLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV 357 + L ++PG+P L FL+ G AW R + + + +++ Sbjct: 337 LSALFAIMPGLPALPFLVIAVGAGIGAWM---RHKTPVKDGDGDVTQISPQPTAPPISEM 393 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 D L +E+G+ L+P+ + +L +I+++R+ A E+GF+ P V I+DN+ L Sbjct: 394 LKLDLLRLELGFGLLPLTSGEN-PQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDN 452 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 Y I +K +EIGSG+ PG+ +A++P A LPG+ T +PAFGL A+WI+ +LK +A Sbjct: 453 YVIKLKEIEIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAM 512 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 T+V+ ++V+ THL+ + Q+ +L Q LLD + +E KL DL+P V L+T+ Sbjct: 513 KCTIVDPASVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTI 572 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDE 596 +VLQ+LL E+V IRD+ TILE++ E + LT VRV L R I G Sbjct: 573 QRVLQSLLAERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGY 632 Query: 597 VHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651 + +I L E + + G + P + ++ + + +E + G PV++V+ Sbjct: 633 IPMITLSAEWEAEFMAHITGQADDRRLAMPPSMLNKFVGKLREVFNTVSASGEIPVVVVS 692 Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 +R + + R P + VLS E+ I+ ATI Sbjct: 693 TPVRDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATIT 731 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 276/693 (39%), Positives = 417/693 (60%), Gaps = 6/693 (0%) Query: 3 NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62 N ++M + L + + ++ I+ ++++P+PA +LD+L ++ S+++L+ A Sbjct: 8 NASSMPSAKSLLDGLMRGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTA 67 Query: 63 MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122 + ++ LEF +FPT+LL TTL RL LN+ASTR+IL G G AG V+EAFGH ++ GN Sbjct: 68 ILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILSHGQEGTGGAGAVIEAFGHLMMQGN 127 Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182 F IG++VF+IL+++NFMV+TKG+GRIAEV ARF LD MPGKQMAIDADL+ GLI +DEAK Sbjct: 128 FVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAK 187 Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242 RR E+ QE+ F+G+MDGASKFV+GDAIAG++I INI+GG+++GV+QH M G AA +Y Sbjct: 188 IRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTY 247 Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302 T++TIGDGLV+QIPAL+IS AAG++V++ + + + QL NP + + +A G++ Sbjct: 248 TIMTIGDGLVSQIPALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGII 307 Query: 303 GLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA-EPKPVKMAENNTVVEATWNDVQLED 361 L+PGMP F LA+ +K A +P ++ A + E + D Sbjct: 308 ALIPGMPIFPFAAMALAAGALAYKRVQDAKKPKALDPADLEAAAPSEPEEEPISASLAID 367 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 + +E+GY L+ +++ +L +IR++RK A E GF+ P V I DNM L Y I Sbjct: 368 DVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIR 427 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 +K +E G+G+ G + ++P LPGE +PAFGL A WI L+E+A +GYTV Sbjct: 428 IKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTV 487 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V+ +TV+ THL ++ ++ A+L E Q+LL + + KL +DL+PG VT TT+ +VL Sbjct: 488 VDPATVLTTHLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVL 547 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q+LL E+V IRD+ ILE + E AP + +L VR L R + + +I Sbjct: 548 QSLLRERVSIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIIT 607 Query: 602 LDTPLERLLLQAL-----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 L E+ +AL L P + +++ R + G PVLL + +RP Sbjct: 608 LSADWEQAFAEALIGPGDDKQLALPPSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRP 667 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + + R Q VV+S E+ ++ + Sbjct: 668 YVRSIIERFRGQTVVMSQNEIHPRARLKTVGMV 700 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 259/683 (37%), Positives = 397/683 (58%), Gaps = 19/683 (2%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K + + + I++M+V+PLP ILD+L ++A+ ++VLL ++ +F+ F Sbjct: 4 KWWNQSDVILGVGAVAIVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIF 63 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVV 129 P++LL TTL RLALNV++TR IL +G A V++AFG F++G + +G ++ Sbjct: 64 PSLLLITTLYRLALNVSTTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFII 120 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F+ILV++ +VITKGA RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR + Sbjct: 121 FIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIE 180 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 E DFYGSMDGASKFV+GD AG++I IN++GG+++G G S A E+Y TIGD Sbjct: 181 AEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGD 240 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 GLV+QIPAL+ + A G+IVTR ++ D+ Q +QLFSN V+ + A LG +PG+P Sbjct: 241 GLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLP 300 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369 + ++ +AG+ L + + ++ + + + + D + +EVGY Sbjct: 301 FIPLVILSAGIAYLGYSLEQTVKEQLESIEKKEKESGQDRKPKDFYEELRTDPIEIEVGY 360 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 LIP+VD Q G LL +I ++RKKFAQ+ G + P V I DN+DL P Y I + G E+G Sbjct: 361 HLIPLVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGI 420 Query: 430 GDAYPGRWLAIN-PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 P + +A+N A ++ GE ++P+FG A WI S K +A+ +GYTVV+ASTVV Sbjct: 421 STVKPDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVV 480 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL-VPGVVTLTTLHKVLQNLLDE 547 THL L++ HA+ L GR+E ++LLD P L +L L + +VLQNLL E Sbjct: 481 VTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQNLLRE 540 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 + IR++ ILE++A + +P+ LT +VR ++ R + + + ++ VI L++ + Sbjct: 541 GLGIRNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRIL 600 Query: 608 RLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 L +++ L P +L+ E M G P+ +VN +R S Sbjct: 601 DRLNKSITQDRIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSY 660 Query: 661 FLRRSLP--QLVVLSNLELSDNR 681 L + P VL+ E+ + Sbjct: 661 LLAKEFPPRNFGVLAYEEIHSSV 683 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 291/686 (42%), Positives = 425/686 (61%), Gaps = 11/686 (1%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + L P+ I+ + ++++PLP ++++LL T NI +++LL ++ Q LEF F Sbjct: 7 ALERIRDLILPVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVF 66 Query: 75 PTILLFTTLLRLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 P++LL TTL RL LNVA+TR+IL + G AAG V+E+FG F+ G A+GI++F+I+ Sbjct: 67 PSLLLATTLARLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIII 126 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 ++I FMVITKGA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+AD Sbjct: 127 IVIQFMVITKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQAD 186 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 F+G+MDGASKFVRGDAIAGI+I +INIVGG ++G LQ GMS+ AAE YT LTIGDGLV+ Sbjct: 187 FFGAMDGASKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVS 245 Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 Q+PA +IS AAG++VTR S ++ + V QL S P ++++ A LGLL + G+P + Sbjct: 246 QVPAFLISLAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPL 304 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKM----AENNTVVEATWNDVQLEDSLGMEVGY 369 L G LG+A++I+ ++++ A+ + + E E D D + ME+G Sbjct: 305 LTLCGGCLGIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGV 364 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 L+ + + G+LL R+ +R+ A E+G + P V IRDNM L +YRI + + Sbjct: 365 GLVRLAAPDRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAE 424 Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489 YP R LAI + G LPGE T DPA+ A+WIE L+ QA++ GYT+VE S+V+A Sbjct: 425 NTIYPDRLLAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLA 484 Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549 THL + +HA EL R + LLD + E P + ++L+PGV+ L + VL NLL E+V Sbjct: 485 THLQRVAKKHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEV 544 Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609 PIR + ILETL +HA D LT VR L R I ++ ++++ V+ LD ++ Sbjct: 545 PIRQLAIILETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDR 604 Query: 610 LLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665 + + G + P + + + +G PP++LVN +RP L + Sbjct: 605 IAAGIDTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNH 664 Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691 +P L+VLS+ E++ + I I Sbjct: 665 IPDLIVLSHNEVTRDTLIESVGIISD 690 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 252/695 (36%), Positives = 410/695 (58%), Gaps = 12/695 (1%) Query: 6 AMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFT 65 A + K + + I++IL+++ LP+PA +LD+ F+IA S+++L+VA++ Sbjct: 31 AAAKPFIKGKFLTGSDIGLAVGIIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWI 90 Query: 66 QRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAI 125 QR L+F+AFPT+LL T++RL+LN+A+TR+IL G+ G AAG V+ F F++GG+F I Sbjct: 91 QRPLDFSAFPTVLLIATMMRLSLNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVI 150 Query: 126 GIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRR 185 G+VVF IL+I+NF+VITKGA RIAEVGARF LD +PGKQMAIDADL++GLI E EA++RR Sbjct: 151 GLVVFAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRR 210 Query: 186 SEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLL 245 E+ +E+ F+GSMDGASKFVRGDAIAG++I +NI GG+++G +HGM + AA+ +T L Sbjct: 211 RELEEESSFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKL 270 Query: 246 TIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305 ++GDGLV QIPAL++S AAG++V++ T + + QL + P +L++A +L +LG++ Sbjct: 271 SVGDGLVTQIPALIVSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVM 330 Query: 306 PGMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDS 362 PG+P F L + + + R+++A A K E + + Sbjct: 331 PGLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQ 390 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + + +G +L + Q+ EL R+ +R+KFAQE GF+ P + + D++ L P YRI + Sbjct: 391 IELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKI 449 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 G + S + G L + ++PGE +PAFG+ A + + +GY V Sbjct: 450 HGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTV 509 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 + +V+ THL+ ++ + A+L ++ + LLDR+ E KL ED+ P ++ + L VL+ Sbjct: 510 DNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLK 569 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E++ IR++ ILE +AE AP+ P + VR+ + + I ++V+ L Sbjct: 570 LLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRL 628 Query: 603 DTPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655 + + Q+L+ ++P L ++ + A+ + G VL+ + R Sbjct: 629 GNRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEAR 688 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 P + + R L VLS++E++ ++ I Sbjct: 689 PYIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 723 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 283/698 (40%), Positives = 433/698 (62%), Gaps = 19/698 (2%) Query: 6 AMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFT 65 +L+ N+K + LA P +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+ T Sbjct: 2 ELLKKFKNIKLS----LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTT 57 Query: 66 QRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAI 125 +R L+F+ FPT+LL TL+RL LNVASTRI+L+EGH G AAG V++AFG ++GGN+ + Sbjct: 58 KRVLDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVV 117 Query: 126 GIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRR 185 G+VVF+IL+IINF+VITKG RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR Sbjct: 118 GMVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRR 177 Query: 186 SEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLL 245 E EA+FYGSMDGASKFVRGDAIAG+LI+ IN++GG+L+G+ H MS + +++ LL Sbjct: 178 QETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALL 237 Query: 246 TIGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 TIGDG+VAQIP+L+++T+A VIVTRVS +D D+ + + Q+ S PSV+ SA V+ ++GL Sbjct: 238 TIGDGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGL 297 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA--TWNDVQLEDS 362 VP MP+L FL+F A L + W ++++ E + + E W V + Sbjct: 298 VPNMPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEP 357 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + + +G++L+ +++ + LL I+ RK ++E+GFL P V IRDN+ L+P Y I + Sbjct: 358 ITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFI 417 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 G E+ G G +A++ + G++ G DPA+ + A+WI K A GY V+ Sbjct: 418 DGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVI 477 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 + V+ATH+N ++S + A +F + + + D++ P+L+E L V L +++ Sbjct: 478 SLADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQ-IIK 536 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 NLL ++VP+++ + I T+ + DP +++ VR AL R I P + + L Sbjct: 537 NLLIDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVL 596 Query: 603 DTPLERLLLQALQGGGG-----------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651 + L+ +L A+ ++P L +L + G P+LLV+ Sbjct: 597 SSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVS 656 Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +RP++S+F R L+VLS E++D+ I + Sbjct: 657 PTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 314/676 (46%), Positives = 464/676 (68%), Gaps = 8/676 (1%) Query: 19 WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78 + + I+LIL M++P+P F+LDL T +I LSI+++LVA + ++ L+F+ FP++L Sbjct: 8 RSDVLVAVGIILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVL 67 Query: 79 LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138 L TL+RL+LN+ASTR+IL G G AAGKV++AFG F+V GNF +G++VF+ILVIINF Sbjct: 68 LIATLMRLSLNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINF 127 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 +VITKGAGRIAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+M Sbjct: 128 IVITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAM 187 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGASKF+RGDAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL Sbjct: 188 DGASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPAL 247 Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318 + STAAG++V+R +T+ ++G+ ++ QLF NP + ++ VL LLGL+PG+P+L F++ Sbjct: 248 ITSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAV 307 Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378 +A+ + +E+K P + E +EA + D + +E+GY LIP+V+ Sbjct: 308 VSGAIAYLMISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLVEG- 366 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + L+ RIRS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + + GR+L Sbjct: 367 -ESSLVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFL 425 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 AI + G T DPAFG++A+WIE +AQ+ G+TVV+AS+V+ THL ++ Sbjct: 426 AIGARPGQD-IDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKN 484 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 + EL G+QE Q+LLD +A+ P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TIL Sbjct: 485 YGYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTIL 544 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 ETL+E+A + DP LT VR AL R IT+ + I + LER +++LQ Sbjct: 545 ETLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTP 604 Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 +P L ++ + ++ + G PVL+ + ++R + R + R P L VLS Sbjct: 605 QGINFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLS 664 Query: 674 NLELSDNRHIRMTATI 689 E++ I M T+ Sbjct: 665 PQEIAPGVKILMFGTV 680 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 259/712 (36%), Positives = 404/712 (56%), Gaps = 31/712 (4%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 M +N +++ + ++++ I+ MM++PLP +LD+L T NI++S+++LLV+++ Sbjct: 1 MAATNSNSFLSKYSDIVLAVVVVAIVGMMIVPLPTLLLDVLLTLNISISVVLLLVSLYVP 60 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 L + FPT+LL TT+ RLAL +++TR+IL+ G G+VV AFG+F+V GNF +G Sbjct: 61 AALHLSVFPTLLLITTMFRLALTISTTRLILLTGDP-----GEVVVAFGNFVVQGNFVVG 115 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 ++F+ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK+R Sbjct: 116 AILFIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRR 175 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 ++ +E+ +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YTLLT Sbjct: 176 DLERESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLT 235 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLG 303 IGDGLV IPA+++ST AG+IVTRV+ +++ +G M +QL + P + ++A +L +LG Sbjct: 236 IGDGLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLG 295 Query: 304 LVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE---------NNTVVEATW 354 LVPG+P + F L G AW + ++Q+A E EA Sbjct: 296 LVPGLPKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALN 355 Query: 355 ND----VQLEDSLGMEVGYRLIPMVDFQQDGE--LLGRIRSIRKKFAQEMGFLPPVVHIR 408 D + + + +EV L+P VD +QD L I +R E+G P V R Sbjct: 356 PDSELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRAR 415 Query: 409 DNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWI 466 N L P Y+I + V + +G A G L + + G V+PA A W+ Sbjct: 416 GNGSLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWV 475 Query: 467 ESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTED 526 ++ + G T + + H ++ ++A E G QE Q +L+++ + P + ++ Sbjct: 476 PEQYRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKE 535 Query: 527 LVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAI 586 +VP VV + L +LQ L++E++ IRD+R IL+ LAE+ +++D LT VR A R I Sbjct: 536 VVPKVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYI 595 Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEM 641 + ++ G + V LD +E + +++ LEP LA ++ + Sbjct: 596 SHKYARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECGHLPP 655 Query: 642 LGAPPVLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692 PV+L +R + + L P VLS ELS +I+ A I + Sbjct: 656 SAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 307/677 (45%), Positives = 443/677 (65%), Gaps = 9/677 (1%) Query: 23 AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82 P+ L+++ +MV+P+P+F+LD+ F NI +S+ VL+VA+ + L+F++FPT+LLF T Sbjct: 20 ILPLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFAT 79 Query: 83 LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142 LLRL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VIT Sbjct: 80 LLRLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVIT 139 Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202 KGAGR++EV ARF LD MPGKQMAIDADLNAGL+ +EAK RR EV EADFYGSMDGAS Sbjct: 140 KGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGAS 199 Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262 KFV+GDA+AG+LI+VINI GGL++G L HG+S+ AA +Y +L IGD LVAQ+PAL++S Sbjct: 200 KFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSI 259 Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 AA IVTRVS+ D+ Q+ +Q F + AA+LGLLG+VPGMP+++ L A Sbjct: 260 AAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMIILSAAAVAGF 318 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEAT----WNDVQLEDSLGMEVGYRLIPMVDFQ 378 +AW + ++ A A N + WN++ +LG+E+GY L+ +VD + Sbjct: 319 VAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGLELGYGLVGLVDER 378 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + L+ RI IR++ ++EMGF+ P+V +RDN+ L P YRI + GV +G + +P + L Sbjct: 379 KGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMGEDECFPEQLL 438 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 A++ G G + G DP+FGL A+WI + A + GYTVV+ +TVVATHLN +I+ Sbjct: 439 ALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVVATHLNQVIAA 498 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 AA+LFG EAQ+LLD + + P+L L P ++L + + LL E VP++D R I Sbjct: 499 TAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEGVPLKDFRRIA 558 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 E + + A +D L +R +G I Q P K + V+ LD LE LL QA++ Sbjct: 559 EAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLESLLAQAVRTSP 618 Query: 619 G----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 G EP LA+R++A EA ++ + R L+R L+ LP+ V+S Sbjct: 619 GASHPFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIARRALARLLKPHLPETPVMSF 678 Query: 675 LELSDNRHIRMTATIGG 691 LE+ D + + + A +GG Sbjct: 679 LEIPDGKAVEVAAVVGG 695 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 713 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 340/667 (50%), Positives = 470/667 (70%), Gaps = 3/667 (0%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++ +R L+F+ FPT+LL T Sbjct: 16 VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 TLLRL+LNVASTRIILM+GHTG AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI Sbjct: 76 TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A Y LLT+GDGLV QIPAL+IS Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 TAAG++V+R S++QD+ + Q+F P + ++AAVL LG++PG P++ FL A L Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNT-VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380 LA W+ + A + P+ E V+ TW+D+ D L +EVGYRLIP+VD Q Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 G L RI R++FA +MG + P++ +RDN+DL+P +RI +KGV++ G+ G+ LA+ Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 + G G + G VDP L +WI++A E+A+++G+ V+E + ++A + + QHA Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495 Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560 EL GR E QQLLD +A+ P L ED+ P + LTT+ +LQ L+ E VPIRD RT+ ET Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555 Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618 LA AP D +L VR ALGR+I + F G D + VIGL E LL + +G Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615 Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 L P D L ++A++ E G PPVLL + LR +LSR LRR+LP+L V++ E+ Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLRAILSRLLRRTLPRLAVIAYAEVP 675 Query: 679 DNRHIRM 685 ++ +++ Sbjct: 676 ADKTVQV 682 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 269/723 (37%), Positives = 419/723 (57%), Gaps = 36/723 (4%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 + +L P + + L ++ IL+++++PLP+ ILD +IALS++++L Sbjct: 6 IVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIIL 65 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 ++++ + + FPT++L TL RL+LN+A+TR+IL EG G A +++ AFG F+VG Sbjct: 66 ISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVG 125 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GN IG++VF ILV+INFMV+TKG+ R++EV ARF LD MPGKQMAIDADLNAGLI E Sbjct: 126 GNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQT 185 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 A+ RR EV EA+FYG+MDG+SKF++GDA+AGI+I +INI+GG L+G QH M++ AA Sbjct: 186 ARARRQEVIAEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAAS 245 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +YT+LTIGDGLV+QIP L+ STA +I+TR S +++ E + QL S +L+ VL Sbjct: 246 TYTILTIGDGLVSQIPGLITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVL 305 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---------QKAPAEPKPVKMAENNTVV 350 + LVPG+P L L L + + + +K+ + Sbjct: 306 FIFALVPGLPTLSLGFMALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTT 365 Query: 351 EAT---------------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFA 395 A ND+ + L +E+GY LI + + EL RIRS+R+ A Sbjct: 366 AAPAKKSEEEILKEEEHKINDILKVEILELELGYGLIKLA----ENELTERIRSMRRSIA 421 Query: 396 QEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV 455 + +GFL P + IRDN+ L+P Y +KGV I S + YP ++LA++ G + G AT Sbjct: 422 ESLGFLMPKIRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATK 481 Query: 456 DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDR 515 +PAF +A+WI++ LK++A + GY V++ ++V++TH++ LI HA+EL RQE Q LLD+ Sbjct: 482 EPAFNSDALWIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDK 541 Query: 516 VAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELT 575 V + P + E + GV ++ + K+L++LL +PI+DM TILE++++ A + + Sbjct: 542 VKNDYPIIVEGAL-GVAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMII 600 Query: 576 AVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLA 630 VR +L R IT + K + + LD+ +L++ +Q G L L+ Sbjct: 601 EHVRASLARMITNMYLDDKGNLDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVD 660 Query: 631 QTQEALSRQEMLGAPP-VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + ++ P +L V LR ++ +VVLS E+++N + I Sbjct: 661 TLRAEVAAVANGRIKPFILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720 Query: 690 GGK 692 + Sbjct: 721 RIE 723 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 254/676 (37%), Positives = 397/676 (58%), Gaps = 15/676 (2%) Query: 19 WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78 LA + ++ IL ++ P+P+ +LD+L N + +++LL+ F + L F+ FP++L Sbjct: 14 RSELALVLGMVGILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLL 73 Query: 79 LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138 L TL RL+LN+A+TR+IL +G AG+V+ A G ++VGGN+ IG+VVF+IL+++ + Sbjct: 74 LIATLFRLSLNIAATRLILSDG-----DAGEVINAIGTYVVGGNYVIGLVVFLILIVVQY 128 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 +V+T GA R+AEV ARF LD MPGKQM+IDAD+N GLI E EA++RR + +EA FYG+M Sbjct: 129 VVVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAM 188 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGASKFV+GDAIAGILI++I+I+GGL VG+ Q G+S G A SYTLLT+GDG+V QIPAL Sbjct: 189 DGASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPAL 248 Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318 VISTA G+I+TR +TD +G+++ Q+ P +++ L L L+PG+P L + + Sbjct: 249 VISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVAS 308 Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378 + L + + + AE + E + + L + +G + + Sbjct: 309 LMAALVVYAFKQNKYQEAEDNVEDQEDA----EKDIYEELKVEPLEISLGPSIAGYL-GA 363 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 +G L+ I+ +RK+ A E+GF+ P V I Y++ + G ++ G+ Y R L Sbjct: 364 SEGALMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRIL 423 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 AI+ LPG + DP +GL A+WIE LKE+A+ T+V+ TV+ TH+N + Sbjct: 424 AISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRL 483 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 A L R E ++L+ RV L E+LVP +TL+ + KVLQ LL EKV IR++ I Sbjct: 484 QAPALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIA 543 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618 E L + + D +L VR LG I Q +HV+ +D +E+L+ ++ Sbjct: 544 EALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTE 603 Query: 619 G-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 ++P L +++L+ + + +G PVL+ + +R + + R LP L VL+ Sbjct: 604 QGASLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLA 663 Query: 674 NLELSDNRHIRMTATI 689 E+ +I+ + + Sbjct: 664 LTEVPVGMNIKSFSIV 679 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 285/682 (41%), Positives = 421/682 (61%), Gaps = 13/682 (1%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 + LA P+ + ++ +M++P+PA +LDLL ++A S++V L A+ ++ ++F+ FPT+LL Sbjct: 22 KSLALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLL 81 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139 TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+ Sbjct: 82 LLTLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFL 141 Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199 V++ GA R AEV ARF LD +PGKQMAIDAD+NAGLI E A++RR + QEA+FYG+MD Sbjct: 142 VVSHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMD 201 Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259 GA++F + D++A ILI INIV GLL+G LQHG+++ A ++YT+LT+GDGLV IP+L+ Sbjct: 202 GAARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLL 261 Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319 +S A G+++TR S+ + ++ QLF + + +++ VLG L LVPG+P L FL+ Sbjct: 262 VSVAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVI 321 Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379 L G+ + + A + K A+ + + V D L +E+G++LIP+VD Q Sbjct: 322 LAGIGRTVTKEQPAEEAAEEAGKKADPSR--ADNLDSVLKVDDLSLEIGFQLIPLVDEAQ 379 Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 G +L R+R++R+ A E+GFL P VHI DN+ L+P Y + ++G+EIG + LA Sbjct: 380 GGLMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLA 439 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 ++ + G+ +PAFG NA WI L+EQA GY+VV+ +T ++THL LI H Sbjct: 440 VSNEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTH 499 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 A EL R E ++LLD + + PKL E+LVP V++L + KVLQ LL E+V IRD+ TILE Sbjct: 500 AHELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILE 559 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 TL E A + VR ALGR +TQ+ + V+ L+ LE L+ A Q Sbjct: 560 TLVEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQSEPP 619 Query: 620 LE-------PGLADRLLAQTQEALSRQEMLGAP---PVLLVNHALRPLLSRFLRRSLPQL 669 + P A L A+ E+L + PVLL R L R+L P++ Sbjct: 620 TDALLDRRTPASAQ-LFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPRI 678 Query: 670 VVLSNLELSDNRHIRMTATIGG 691 VL+ E+ + + G Sbjct: 679 TVLAPPEIGPEIRVHSIGVLRG 700 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 300/700 (42%), Positives = 454/700 (64%), Gaps = 17/700 (2%) Query: 1 MSNLAAMLRLPANLKSTQWQIL---AGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57 M + + A++ ++W L GPI++++IL+M+V+PLP +LD+LFTFNI S++ Sbjct: 1 MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60 Query: 58 VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117 +L A +T++ L+F+AFPT+LL TLLRLALNVA+ R+IL++G+ G AAG V+E+FG F Sbjct: 61 ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120 Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177 +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180 Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237 +++AKKRR ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+ Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240 Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296 AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G + QLF N +L++A Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300 Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN- 355 +LG+ G++PGMP+ FLL+ + + ++ + + + AE VVE + Sbjct: 301 IILGITGIIPGMPHWAFLLYALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPIDA 360 Query: 356 -DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414 ++ + +G+ +GY+LIP++ Q+DGEL R+ +R++ ++ GF+ P +H+ D++ L+ Sbjct: 361 RVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTLR 418 Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474 P YRI + G+ G+ + + LAI G+ + G T DP +G A WI + A Sbjct: 419 PGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDA 478 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 ++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+ KL + ++P +VT Sbjct: 479 ELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTA 538 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF--- 591 L KVL++L+ E+V +RD+ ILE+LAE +L ++R LGR I Sbjct: 539 PKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGR 598 Query: 592 PGKDEVHVIGLDTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAP 645 + + ++ +L A LEP + L ++A+++ E Sbjct: 599 DRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMR 658 Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685 PV+LV A+R LS +LR + + VL E+ ++ Sbjct: 659 PVILVRDAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 296/682 (43%), Positives = 436/682 (63%), Gaps = 10/682 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + LA I +L IL+++++PLP LD+ +I LS+++LLVA+ R +EF+ FP Sbjct: 11 AGGRAELAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFP 70 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++LL TL RLALNVA+TR+IL +G GA AAG ++E FG F VGG+ +G+VVF+IL+I Sbjct: 71 SLLLLVTLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLI 130 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 +NF VITKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR + +E +F+ Sbjct: 131 VNFTVITKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFF 190 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFVRGDA+AG+ I +NIVGGLL G+L+ +S+ AAE+YTLLT+GDGLV+Q+ Sbjct: 191 GAMDGASKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQM 250 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 PAL++STAAG++VTR + D+G Q+ +Q+ P V+ +A VL LGL+PGMP + F Sbjct: 251 PALLVSTAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGG 309 Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375 LL A GR++ A P+P + ++ LE + VGY L+P++ Sbjct: 310 VAGALLLAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALE----LGVGYGLVPLI 365 Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435 D + GEL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P Sbjct: 366 DLDKGGELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPE 425 Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 R +A++P + G VDPAFGL A+WI A + +A+ G T+V+A++V+ THL+ L Sbjct: 426 RLMALDPNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSEL 485 Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555 + ++A E+ GRQE Q+LL + ++ PKL ED+VPG ++L L +V++ LL E V +RD+R Sbjct: 486 LRRNAHEIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLR 545 Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615 T+LE +A+ AP +P L R L R +T + V + LD E L L Sbjct: 546 TVLEAVADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLG 605 Query: 616 GGGG---LEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670 G L P + A RL+A + +R G P VLL LR L F R +P + Sbjct: 606 ASDGEAALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQ 665 Query: 671 VLSNLELSDNRHIRMTATIGGK 692 VL+ EL+ + T+ + Sbjct: 666 VLAARELAPGTTVEPAGTVQAQ 687 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 287/737 (38%), Positives = 422/737 (57%), Gaps = 60/737 (8%) Query: 11 PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70 P + T + L I+ IL+++++PLP+ +LD +IALS +++L+A++ ++ + Sbjct: 16 PFLSQLTGSKDLTVVFFIIAILAIIIVPLPSALLDFFLAISIALSALIILIALYVKKPTD 75 Query: 71 FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130 F+AFPT+LL TL RL+LN+A+TR+IL GH G A ++ AFG F+VGGN+ IGI++F Sbjct: 76 FSAFPTLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILF 135 Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 +ILVIINFMV+T G+ R++EV ARF LD MPGKQMAIDADLN GLIG++EAK RR E+ Sbjct: 136 IILVIINFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAA 195 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 EADFYGSMDGA+KFV+GDAIAGI+I +INI+GG L+GV Q MS+ AA ++T+LTIGDG Sbjct: 196 EADFYGSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDG 255 Query: 251 LVAQIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 LV+Q+PAL++STA G+IVTR S + ++ +V+QL + +++ +L L LVPG+P Sbjct: 256 LVSQLPALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLP 315 Query: 310 NLVFLLFTAGLLG-------------------LAWWIRGREQKAPAEPKPVKMAENNTVV 350 + L L +R + + P P + + + Sbjct: 316 TISLGFVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGG 375 Query: 351 EAT--------------------------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384 + + L + +GY+LI D Q GEL+ Sbjct: 376 QTPQNAQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELV 435 Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444 +IR+IRK A E G L P+VH+RD+++L P Y+IL+K +EIG G ++LAI Sbjct: 436 NKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSG 495 Query: 445 AAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 G LP G T +P FGL+A WI+ KE A I+GYT+++ +TV++TH+ LI Q+A EL Sbjct: 496 FVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEEL 555 Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563 RQE L+ ++ Q+ P L E++ V + T+ +L+ LL E++PI+DM +I E +A+ Sbjct: 556 LTRQEVANLVAKLGQDYPILAEEI--KGVGIGTIQHILKELLHEQIPIKDMLSIAEAIAD 613 Query: 564 HAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL------QALQG 616 P D L+ VR L R IT + + L LE+ LL Q + Sbjct: 614 GYPAYKADLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ 673 Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLL--VNHALRPLLSRFLRRSLP--QLVVL 672 L P + LL A + +GA P ++ V LR L+ FL + +VVL Sbjct: 674 RLRLSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVL 733 Query: 673 SNLELSDNRHIRMTATI 689 S E+ + +I Sbjct: 734 STAEIDYQSKFEILGSI 750 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 226/693 (32%), Positives = 378/693 (54%), Gaps = 26/693 (3%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + L + ++ ++ M++LPLP I+DL+ T N+A+S+ +L+VA++ L+ + FP Sbjct: 21 INKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFP 80 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++LL TT+ RL +N++S+R IL++ + AG V++AFG F+VGGN+ +G ++F+I+ I Sbjct: 81 SLLLITTMFRLGINISSSRQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITI 135 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 I F+V+TKGA R+AEV ARF LD MPGKQMAIDADL AG+I +A+ +R + +E++ Y Sbjct: 136 IQFIVVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELY 195 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGA KF++GD IAGI+I +INIVGGL +GV HGM + AA YTLL+IGDGLV+QI Sbjct: 196 GAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQI 255 Query: 256 PALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 P+L+IS AG++ TRVS+D ++G+++ +QL P +LL++A +G G P F Sbjct: 256 PSLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSF 315 Query: 314 LLFTAGLLGLAWWI------RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367 + + L + ++ + A A+ +D L + +E+ Sbjct: 316 SILSFIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILEL 375 Query: 368 GYRLIPMVDF---QQDGELLGRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMK 423 G L ++ + I +R+ Q++G P +H+R D+ L+ Y IL+ Sbjct: 376 GKDLSALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLN 435 Query: 424 GVEIGSGDAYPGRWLA--INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 V G P L + LP T A GL + W+ K + Sbjct: 436 EVPYVRGKIPPHHVLTNEVEENLKRYNLPFI-TYKNAAGLPSAWVSEDAKTILEKAAIKY 494 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V+ HL++ + + E G QE + +++ + + P L +++ ++ L L ++ Sbjct: 495 WTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVT-RLIPLQKLTEIF 553 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 + L+ E++ I+D+RTILE+L+E A + D LT VR +L I+ ++ G+ + V Sbjct: 554 KRLVQEQISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYL 613 Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 LD +E ++ A++ L+P + +L + ++ G PPVLL +R Sbjct: 614 LDPEIEEMIRGAIKQTSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRR 673 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + + + P + V+S E+ I+ I Sbjct: 674 YVRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 223/682 (32%), Positives = 390/682 (57%), Gaps = 26/682 (3%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 K+ + ++++ + MM+LPLP ++D+L N+ LSI++L++A++ + LEF+ F Sbjct: 10 KAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVF 69 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RLAL ++++R+IL++ AG +V FG+F+VGGN A+GI++F I+ Sbjct: 70 PSLLLITTLYRLALTISTSRLILLQ-----HDAGDIVYTFGNFVVGGNLAVGIIIFAIIT 124 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ F+VITKG+ R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK++R++V +E+ Sbjct: 125 IVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQL 184 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV+GDAIA I++++ NI+GG+ VGV+QH MS A +Y +L++GDGL+AQ Sbjct: 185 YGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQ 244 Query: 255 IPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 IP+L+IS AG+IVTRV + Q++ ++V Q+ P+ + ++ V+ + L+PG P LV Sbjct: 245 IPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILV 304 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 F + +LG + W++ ++++A A+ E + +A +D D++ ++ Sbjct: 305 FGTLGSVVLGASLWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGAVPLIL 358 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 + + ++ +R ++ +++G P + ++ +L+ + Sbjct: 359 YLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQL 418 Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 P L I+ T+P P WI+ EQA+ QG V + A + Sbjct: 419 VPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVM 475 Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 +I ++A E G QE + L+D + +L ++L ++++ + ++LQ L++E + +R Sbjct: 476 GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVR 534 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612 D+RTI ETL E P + D LT VR+AL R I +++ + + V+ + +E ++ + Sbjct: 535 DLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRE 594 Query: 613 ALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667 +++ L+ ++L QE L + VLL + +R L + + R L Sbjct: 595 SIRQSTAGSYSALDMAQTQQILTCIQEQLPPE----QTCVLLTSLDVRRYLRKIVERELF 650 Query: 668 QLVVLSNLELSDNRHIRMTATI 689 VLS EL D+ I++ + Sbjct: 651 STPVLSFQELGDDAEIKVIGQV 672 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 684 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 242/689 (35%), Positives = 409/689 (59%), Gaps = 15/689 (2%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 L L + ++ +++ +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ Sbjct: 13 LGLNNKSDLIISVGLIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSV 72 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FPT+LL T+ L LN++STR+IL +G G+++ FG F+VG + G+V+ I+ Sbjct: 73 FPTLLLVMTIFGLVLNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFII 129 Query: 134 VIINFMVI----TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 II V TKGA R+AEV ARF LD +PGKQMAID+ ++G + E+EA ++++++ Sbjct: 130 FIIIIAVQFIVITKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQ 189 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 E +FYG+MDGASKFV G+ G LI +INI+GGLLVG+ G++ A +Y LT+GD Sbjct: 190 SEVNFYGAMDGASKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGD 249 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 GLV+Q+P+L+IST+ G+IVTR + G ++ +Q ++ + + + L L +PG P Sbjct: 250 GLVSQLPSLLISTSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFP 309 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTV-VEATWNDVQLEDSLGMEVG 368 L+ + + + LA+ + G QK + K E ++ + + V D L +E+G Sbjct: 310 TLILMFLSLSIAFLAYSLSGIRQKEEIDKKMKLEEEQASIYSDKDVSPVVPLDPLALEIG 369 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y L+P+VD + ELL RI IR++ A E G + P + I DNM L+P Y ++GVE+G Sbjct: 370 YNLVPIVDDTKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVG 429 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 G+ G++L IN G +G + G+ DP+FGL ++W+ +E A+ GYTVV+ +++ Sbjct: 430 RGEIKLGKFLVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSII 488 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATH+ LI +H+ E+ RQ+ Q LD ++ + E+++ ++ + +VLQ LL E+ Sbjct: 489 ATHMTELIKRHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQ 547 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 V IR++ TI ET+A+ I D L R ++GR IT + E++VI L+ E+ Sbjct: 548 VSIRNLVTIFETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQ 607 Query: 609 LLLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 +++ + ++P L + + + + ++ + G PV+L + + RP++ Sbjct: 608 MIIDSRVESNHDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITS 667 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIGGK 692 R +P LVV+S LE+ N + + T+ + Sbjct: 668 REIPDLVVMSVLEVPQNIKVNVLKTVEVE 696 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 684 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 280/685 (40%), Positives = 421/685 (61%), Gaps = 10/685 (1%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N++ LA P IL I+ +MV+P+PA +LD+ NIALS+ VL+ AM Q+ L+F+ Sbjct: 2 NVRHFLNPGLALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFS 61 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FP++LLF TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+I Sbjct: 62 SFPSVLLFATLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLI 121 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L+IIN MV+TKGAGR++EV ARF LD +PGKQMAIDADL AGL+ DEAK RR E+ EA Sbjct: 122 LMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEA 181 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 DFYGSMDGASKFV+GDA+A +LI++IN++ GL++G+ HG++ G AAE+Y L +GD LV Sbjct: 182 DFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALV 241 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 A +PAL++S AA VIVTRVS +D+ Q+ QL ++P + L A +L ++G +P MP + Sbjct: 242 ASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSI 300 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 L ++G L + +R + P+P + + + +V + + +++GY LI Sbjct: 301 ILPLSSGTFYLWFRLRKNHEARKEMPEPEAKPDPSHIT---IEEVTDQTLVTVQLGYGLI 357 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 + D ++ L+ R+ +RK+ Q GF+ P I D+ +L P YRI + G +G G Sbjct: 358 SLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKI 417 Query: 433 YPGRWLAINPGTAAGT--LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 PG LAI+ G G+ +PG TVDP+FG A+WIE ++ A +GY V+ +V+AT Sbjct: 418 NPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIAT 477 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 ++ L+ A +L G + + L++ + +L + + P ++L L ++L++LL + + Sbjct: 478 QVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGIS 537 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610 +R + +++ A ++ L +VR LG I + P ++ VI L LE ++ Sbjct: 538 LRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMV 597 Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666 LQ +EP LA + + + +++ P L+V R LS LR Sbjct: 598 TGGLQDPSSGEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRA 657 Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691 PQ +VLS EL + I + A +G Sbjct: 658 PQCLVLSINELPVAQPIEVIAVVGD 682 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 214/692 (30%), Positives = 367/692 (53%), Gaps = 34/692 (4%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 L K+ + L + + + MM++PLP ++D++ NI+ ++++L+++++ + L Sbjct: 5 LNIFKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPL 64 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 E +FPTILL TTL+RL+L+V++TR+IL+ AG ++ +FG+F+VGGN +G+V+ Sbjct: 65 ELTSFPTILLITTLMRLSLSVSTTRLILLH-----HDAGDIIYSFGNFVVGGNIVVGLVI 119 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F I+ I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I EAK RS V Sbjct: 120 FTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQ 179 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +E+ FYGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q M A +++L++GD Sbjct: 180 KESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGD 239 Query: 250 GLVAQIPALVISTAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305 LVAQIPAL+IS AGV+VTRV ++++ +V Q+ N L+SAA++ ++ ++ Sbjct: 240 ALVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAII 299 Query: 306 PGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365 PG P LVFL LLG+AW ++ + +A D+ ++ Sbjct: 300 PGFPALVFLFLAVCLLGIAWKLQKKR-----------TFGTGNNKDAMGADLSNSQNISP 348 Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425 ++ + ++ +I +R F +E G P + + + A L+ Sbjct: 349 GAEPLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSA-IEFLLYQE 407 Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485 I + G A + + ++ A + G V + Sbjct: 408 SIYKDTLI-DDTVYFEAGHAEISFEFVQEK-LSTNSIVYKTNKTNQQLAHLTGMDVYATT 465 Query: 486 TVVATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 T L L+ +A E G QE + L+D + ++ +L ++L + L+ + +LQ L Sbjct: 466 NDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRL 524 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 ++E V IRD+RTI ETL + + D L VR+AL R I ++ ++V + + Sbjct: 525 VEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGS 584 Query: 605 PLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 +E L ++++ + P ++++ + ++ V+L +R + Sbjct: 585 DIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNG----VILTALDIRRYVK 640 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 + + S P + VLS E+ +N +++ T+ Sbjct: 641 KMIEGSFPSVPVLSFQEVGNNIELKVLGTVND 672 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 679 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 239/712 (33%), Positives = 386/712 (54%), Gaps = 34/712 (4%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 MS+L L A + + Q + G +++ I+ MM++PLP ++D+L NI +S ++++ Sbjct: 1 MSSLFVWLNRLA-ISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIV 59 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 +AM+ + L F+ FP++LL TT+ RLAL++++TR IL++ AG +VEAFG+F+VG Sbjct: 60 LAMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQ-----QDAGHIVEAFGNFVVG 114 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GN A+G+V+F+IL ++NF+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI + Sbjct: 115 GNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQ 174 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 A++RR + +E+ +G+MDGA KFV+GDAIAG++I+ IN++GG +GVLQ+GM G A Sbjct: 175 ARQRRENLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMH 234 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-----DVGEQMVNQLFSNPSVMLLS 295 Y++LTIGDGL+AQIPAL+IS AG+I+TRVS D ++G ++ QL S P ++S Sbjct: 235 IYSVLTIGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMS 294 Query: 296 AAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT-W 354 AA + L+PGMP VF++ +A LG + R ++ ++ + ++ E + Sbjct: 295 AAGMLGFALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGY 354 Query: 355 NDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414 D++ + + ++ + L+ IR +R + GF P I + L Sbjct: 355 QDLRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALA 414 Query: 415 PARYRILMKGVEIGSGDAYPGRW--------LAINPGTAAGTL-PGEATVDPAFGLNAIW 465 +R + + + + + + + G + G + PG+A D + W Sbjct: 415 ADEFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCW 471 Query: 466 IESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTE 525 + Q + A ++ + I Q A+ G QE++ +L+ + E P+L + Sbjct: 472 LPPQH-PLLQQEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQ 530 Query: 526 DLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRA 585 +L ++ L+ VLQ L E++P+R +RTI ETL EH + D LT VR+AL Sbjct: 531 EL-QRIMPLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEH 589 Query: 586 ITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE 640 I Q+ ++V L E LL +L+ L LL Q + A Sbjct: 590 ICHQYQQPNG-LNVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPY- 647 Query: 641 MLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 ++LV LR L L+ + VLS EL+ N I + + + Sbjct: 648 -DNHHALILVAQDLRSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQ 698 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 308/686 (44%), Positives = 430/686 (62%), Gaps = 12/686 (1%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + + P+ IL +++MMVLPLP +LDL F NI LS+++L+VA+ T R L+F++FP Sbjct: 11 GARLGGMTLPLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFP 70 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 +ILL T+LRLALNVASTRI+L GHTG AAGKV+EAFG F++GGNF +G VF ILVI Sbjct: 71 SILLVATVLRLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVI 130 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 IN +VITKGAGR++EV ARF LD MPGKQMAIDADLNAGL+ DEA++RR++V EADFY Sbjct: 131 INLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFY 190 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFV+GDA+AGILI++INIVGG+++G LQHG+ + AAE+Y LL+IGDGLVAQI Sbjct: 191 GAMDGASKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQI 250 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 P+L++S A +IVTRVS+ D+ + Q+ + AAV+ +LGL PGMPNL+FLL Sbjct: 251 PSLLLSIATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMPNLLFLL 309 Query: 316 FTAGLLGLAWWIRGRE-------QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 +AW RE A V+ T DV + +++G Sbjct: 310 GGVAAAAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAPISLQIG 369 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 Y LIP+ G L+ RI +IR+ ++ +GF+ P V IRD++ L P +YRI + + Sbjct: 370 YGLIPLA-GDNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQAILA 428 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 YP R LA+ G + L G A DP+FGL A WI +A+ + VVE +V+ Sbjct: 429 EDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEPESVI 488 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 ATHL+ ++ +HAA+L G+ + Q L+D + + P L + +VP +V L L VL+ LL ++ Sbjct: 489 ATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKALLADR 548 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 +P+ DMR ILE L++ A P E+ +R AL + QQ P + +I L+ LE+ Sbjct: 549 IPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEPDLEQ 608 Query: 609 LLLQALQGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665 LLL++ + G + + GLA LL E L G ++V LR + F+R Sbjct: 609 LLLRSRRQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAFVRPH 668 Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691 LP VV+ EL + R + + T+GG Sbjct: 669 LPDAVVIGMGELPEARRVEVLGTVGG 694 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 289/692 (41%), Positives = 425/692 (61%), Gaps = 14/692 (2%) Query: 9 RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68 PA+ L + +L +L + ++PLP +LD+L FNI+ ++++LLV + ++ Sbjct: 17 TTPASGSPLLRSELLLSVALLGLLVIFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQP 76 Query: 69 LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128 LEF+ FP++LL TL RLALNVA+TR++L+ G AG +VEAFG F+VGG+ +G+V Sbjct: 77 LEFSTFPSLLLLLTLFRLALNVATTRLVLLNG-----DAGTIVEAFGKFVVGGSLIVGLV 131 Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188 +F+IL++I F+VITKGAGR++EV ARF LD +PGKQMAIDA++NAG+I E EAK+RR+ + Sbjct: 132 IFLILIVIQFVVITKGAGRVSEVAARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSL 191 Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248 +E++FYG+MDGAS+FVRGDA+A I+I IN+ GG ++G L GM + A Y++LTIG Sbjct: 192 MRESEFYGTMDGASRFVRGDAVAAIIITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIG 250 Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 DGLV QIPAL+ +TA+ ++VT+ ++ +GE++ Q + L+A +L L LVPGM Sbjct: 251 DGLVTQIPALITATASAMLVTKATSGTSLGEELGGQFSAASGPFRLAAFILIALALVPGM 310 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAP------AEPKPVKMAENNTVVEATWNDVQLEDS 362 P L FL LL L+ + + P A A + + VE +D D Sbjct: 311 PMLPFLALGVALLLLSRRMSRVPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDR 370 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + +E+G LIPMV ++ L+ RI +R+ A++ G P V +RDN+ L P YRIL+ Sbjct: 371 VSLEIGAALIPMVSARRGPGLIDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILL 430 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAG-TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 G E+ GD P WLAI+PG AA L GE +PAFGL A WI A + +A+ G+TV Sbjct: 431 GGREVARGDVRPDLWLAIDPGGAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTV 490 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 V++ V+ THL ++ +HA EL GR + + ++DRV + P + +DL+P VV++ LH+VL Sbjct: 491 VDSPNVIITHLGEVVRRHAGELLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVL 550 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 LLDE+VPI ++ ILE+LA HAP DP EL VRV LGRA+ ++ + I Sbjct: 551 TQLLDERVPISNLPRILESLAAHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIV 610 Query: 602 LDTPLERLLLQALQGGG-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 LD LE L +A+Q ++P ++L + L + G LL + LR L Sbjct: 611 LDPRLELDLKRAVQNNQLIIDPSRLEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRH 670 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 L R+L L V+S E+ + + A I + Sbjct: 671 SLARALHDLSVVSYQEIPTDLLMEPVAVIRPE 702 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 263/705 (37%), Positives = 416/705 (59%), Gaps = 29/705 (4%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 + + K + L L L +L+++++PL LD + ++A+S ++LL++++ Q+ Sbjct: 1 MNFDFKKIFTRDLIAVALFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPA 60 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 + FPT++L + RLAL++A+TR IL EGH G A ++ AFG F+VGGN IGI++ Sbjct: 61 DLTTFPTLILILVVFRLALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIII 120 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F+ILV+INFMV+TKGA R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR + Sbjct: 121 FIILVLINFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALI 180 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 EA+FYG+MDG+SKFV+GDAIA I+I ++N+VGG+LVG+ QH +S+ A E+YT+LTIGD Sbjct: 181 SEANFYGAMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGD 240 Query: 250 GLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 GLV+QIPAL++STA +I+TR + D+ Q VNQL + ++L L L LVPG Sbjct: 241 GLVSQIPALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGF 300 Query: 309 PNLVFLLFTAGLLGLAWWI------------------RGREQKAPAEPKPVKMAENNTVV 350 P + + + GL + I ++ P + K + + Sbjct: 301 PTFILMTMGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADE 360 Query: 351 EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDN 410 T + + L +++G RL+ +V Q + ELL +I++IRK A E+GF+ P + I D+ Sbjct: 361 TQTIETIMKLEVLELKLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDD 418 Query: 411 MDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESAL 470 L P Y++ +K + + G ++LA+ GT L G +P F L+A WI L Sbjct: 419 SYLSPNEYQLYLKRIPLVKGRIEVDKFLAM-GGTGNEKLQGIHVKEPVFNLDATWITGDL 477 Query: 471 KEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPG 530 +E+A ++G+TVV+A T+++TH++ +I +HA ++ RQ+ +++R+ ++ P + E+ + Sbjct: 478 REEALMKGFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAM-K 536 Query: 531 VVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQW 590 V + L KV ++LL EK+PI DM TI+E +A+ A P L VR L R ITQ++ Sbjct: 537 VTSYGALLKVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKF 596 Query: 591 FPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAP 645 +H+I + +E+ + LQ G L + L+ +T++ L EM G Sbjct: 597 KDTDGILHIITIKPDVEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFS 656 Query: 646 PV-LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 V ++V+ LR +S + Q+ VLS+ EL + + T+ Sbjct: 657 KVCMVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 242/704 (34%), Positives = 396/704 (56%), Gaps = 22/704 (3%) Query: 2 SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61 ++ ++LPANL ++ + I ++++ M+++PLP+ ILD L NI +S+++LL+ Sbjct: 5 KSILDNIKLPANL--SRHSDIMFAIGAVMVIMMLIIPLPSLILDFLLIINIIVSLLILLM 62 Query: 62 AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121 + + +F+ FP++LL T RLALNV++TR IL EG A GKV+ +F F+VGG Sbjct: 63 VLSIRSANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGG 119 Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181 N +G+V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA Sbjct: 120 NIVVGVVIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEA 179 Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241 +++R ++ E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+ G A + Sbjct: 180 EEKRKKIRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNA 239 Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301 YT T+GDGLV+QIP+ +S A G++VTR S++ ++ Q+ Q+F+ P + + A Sbjct: 240 YTRFTVGDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFF 299 Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQL 359 L L+PG P + + L + ++ +Q+ K V + + Sbjct: 300 LMLLPGFPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLK 359 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 + + + VG LIP+ + G+L+ RI IR++ A E+G + P V I DN ++P Y Sbjct: 360 VEKIELSVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYT 419 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQG 478 + + G E+ G P LA+N + G P E +PAFGL A WI+ K+ A+ +G Sbjct: 420 VSINGTEMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKG 479 Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP----GVVTL 534 + + + ++V+ATH + I ++A L GR+E Q +LD + + L +++ L Sbjct: 480 FMLFQPTSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPL 539 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594 + KVLQNLL E+VPIR+ ILE +A+ I + T +VR L I+Q Sbjct: 540 GYIQKVLQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQD 598 Query: 595 DEVHVIGLDTPLERLLLQALQGGG--------GLEPGLADRLLAQTQEALSRQEMLGA-P 645 + VI L L+ + Q L G + L+ ++A+ G Sbjct: 599 RNIRVITLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDD 658 Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 V L + +R L +F+ +++ + V++ E++ +++ A+I Sbjct: 659 IVFLTSPIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 218/703 (31%), Positives = 374/703 (53%), Gaps = 37/703 (5%) Query: 14 LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73 L L +++L++ M+++PLP +++D L NI ++I++ + + + +R L F Sbjct: 7 LAIKNKPELIVLSVMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMT 66 Query: 74 FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133 FP +LL TTL RLAL+++++R+IL++ A AG+++ +FG F++G N +G VVF I+ Sbjct: 67 FPALLLITTLFRLALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIV 121 Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193 I+ F+VITKG+ R+AEV ARF LDGMPGKQM+IDADL +G+I +E + RR E+ QE+ Sbjct: 122 TIVQFLVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQ 181 Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253 YGS DGA KF++GDAIAGI+I+ +N++GG+ VG+ Q G+S+ A +YTLLTIGDGLVA Sbjct: 182 LYGSFDGAMKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVA 241 Query: 254 QIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 QIPAL+IS +AG IVTRV + ++G ++N+L + +L++A + +G +PG P V Sbjct: 242 QIPALLISISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPV 301 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG----MEVG 368 FL+ + L ++ + + + + E K +N+ A + + EV Sbjct: 302 FLILSVMLG--VYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVD 359 Query: 369 YRLIPMVDFQQDGELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNM 411 L+ E L I + ++K+F + G L P + I + Sbjct: 360 NSLLTENITLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSD 419 Query: 412 DLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALK 471 + + IL+ V+ + + NP +L WIE + Sbjct: 420 KIDDDKIIILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERDDE 479 Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531 + GY + + + LI+ + E G QE + +LD++ + P+L ++ Sbjct: 480 SKLAPLGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECY-RQ 538 Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591 V++ ++ VLQ L+ EK+PIR+++TI+ L + + DP LT +R L R I+ +F Sbjct: 539 VSIQRINDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISY-FF 597 Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPP 646 + + I L +E ++ ++ LEP D ++ + + + + Sbjct: 598 STDGKFNAIILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYIQ-DY 656 Query: 647 VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + L + +R + + + PQ+ VLS E++ + I + +I Sbjct: 657 IFLTSIDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 245/690 (35%), Positives = 382/690 (55%), Gaps = 21/690 (3%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 I +L+++ +V+PLP ILD L FN+ ++++LL+ +F ++ +F+ FP++LL Sbjct: 11 TDAFVAISVLVVVFSIVVPLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLL 70 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVI 135 +T+ L LNV+STR+IL G +G ++ AF F+VGG+ IG VF+IL+ Sbjct: 71 TSTVFGLGLNVSSTRLILTLGDR---FSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIA 127 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 + VITKGA RIAEV ARF LD K M+IDA+ NAG+I E+EA++R+ ++ +EADF+ Sbjct: 128 VQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFF 187 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGASKFV G+ GI I ++N++ GL+VGV+ A ++YT LTIGDGL+AQ+ Sbjct: 188 GAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQL 247 Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315 P+L++S A G IVTR S G+ + Q + V + + L ++ ++PG P+ + Sbjct: 248 PSLLLSVATGFIVTRSSDQGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFF 307 Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND-----VQLEDSLGMEVGYR 370 + +R RE+ E + K ++ + + + + D L +E+GY Sbjct: 308 MAVCFAFVGLQLRKRERVHVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLSLELGYG 367 Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430 LIP+VD ++ ELL RI IRK A ++G + P + I DNM L P+ Y ++G+E+ G Sbjct: 368 LIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARG 427 Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 G +LAI G +PGE T+DP FGL A+WI +++A+ GYTVV S ++AT Sbjct: 428 KLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIAT 487 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 HL +I +AA++ GRQ Q ++D + +E P + +D+ L + KVLQ LL E+V Sbjct: 488 HLTQVIRTNAADILGRQNVQMIIDALRKEYPAVVDDVTQK-CPLGKIQKVLQGLLREQVS 546 Query: 551 IRDMRTILETLAEHAPIQS--DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 IR+ I ETLA+ A L VR LGR I Q+ ++ +HV+ LD+ LE Sbjct: 547 IRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLET 606 Query: 609 LLLQALQGGGG------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 L + + L ++L + G PVLL +R + Sbjct: 607 FLSEKIALTVDSLSILTLSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDTIRSAMWNLF 666 Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 ++ V+S E+S + I + + Sbjct: 667 FSDRIEIAVMSYKEVSTDMRIETVGVVRIE 696 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 222/687 (32%), Positives = 382/687 (55%), Gaps = 20/687 (2%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + L +L+++I++M+++PLP +++D L NI L+I+V + + + +R L F+ F Sbjct: 8 QVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTF 67 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RLAL+++++R+IL++ A AGK++ FG F++G + A+G V+F I+ Sbjct: 68 PSVLLITTLFRLALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVT 122 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 ++ F+VITKG+ R+AEV ARF LDGMPGKQM+IDADL AG+I AK+RRS + +E+ Sbjct: 123 VVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQL 182 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YGS DGA KF++GDAIAGI+I+ +N++GG+ VG+ QHGMS+ A +YT+LTIGDGLV+Q Sbjct: 183 YGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQ 242 Query: 255 IPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313 IPAL+IS +AG IVTRV+ D ++G +++Q+F NP V+++++A+ +G++PG P VF Sbjct: 243 IPALLISISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVF 302 Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373 L L L ++ + E++ ++ + + + +P Sbjct: 303 FLIAVTLTALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVP 362 Query: 374 MV-----DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 ++ + ++ G I IR +F + G P + R + +L+ +L+ V Sbjct: 363 LILLFAENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRAD 422 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTV 487 S + Y + + L G V ++ I W++ + E + A Sbjct: 423 SFNIYFDKVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDE 481 Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 L+ + + E+FG QE + +LD+ P L +++ VT+ + +VLQ LL E Sbjct: 482 FYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGE 540 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 + +R+++ I+E+LA AP + D L VR +L R I + E+ V+ L +E Sbjct: 541 NISVRNLKLIMESLALWAPREKDVITLVEHVRASLSRYICSKIA-VSGEIKVVMLSGYIE 599 Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 + + ++ G ++ ++D ++ AL VLLV+ +R + R + Sbjct: 600 DAIRKGIRQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLI 659 Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATI 689 ++V+S E+ + I + TI Sbjct: 660 DNRFKSILVISYAEIDEAYTINVLKTI 686 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 239/693 (34%), Positives = 380/693 (54%), Gaps = 16/693 (2%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 + + + I++L I+ MM+LP+P+ +LD+ + +LSI++ V +F R L+F+ Sbjct: 8 SSRHFLQPTVFFVIMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFS 67 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 AFPT+LL + +LRL+LNV+ST++I+ +GH G AAG V+E F +F++GG+ +G+VVF++ Sbjct: 68 AFPTVLLASLMLRLSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLV 127 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L+I+NF+VITKGA R+AEVGARF LDGMPGKQ+AIDAD++AG I EAK+RR E Sbjct: 128 LLIVNFIVITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAET 187 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 F+GS+DGASKFV+GDA+AG+LI +N++ GL++G+ H M +G A +Y++LT+GDGLV Sbjct: 188 TFFGSLDGASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLV 247 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 QIPA++IS AA +++ + +D+ + Q +P+ + ++ L L+PG+P + Sbjct: 248 TQIPAVIISIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIP 307 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 F L L G A ++ + +P E + A+ + EAT D+ D + + L+ Sbjct: 308 FTLGAMVLGGAALYLYRKTPDSP-EGEDKPAAQTDRPREATMGDILDVDEIHVTFSTDLV 366 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432 + G L RI+S+R A E G + P + + D+ L A Y I + GVE G Sbjct: 367 SSILDAAGG-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQL 425 Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492 YP R L + P +P +G A WIE + +++ + G T V ++ V+ATHL Sbjct: 426 YPDRILLLLPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHL 485 Query: 493 NHLISQHAAELFGRQEAQQLLDRVA--------QEMPKLTEDLVPGVVTLTTLHKVLQNL 544 ++ + A L + ++L+ + + L E+L+P VT TL +L+ L Sbjct: 486 LEVVKGNLARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLL 545 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 L+E+V IR++ ILE +AE I S + VR L I + +I L Sbjct: 546 LEERVSIRNLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQ 605 Query: 605 PLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLL 658 E++ + L P L +L+ E + + G P ++ + R L Sbjct: 606 EWEQIFAANSIGREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFL 665 Query: 659 SRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 S L Q+ VLS EL + + Sbjct: 666 STVLASKGLQVPVLSFEELGKTNRPSLVGVVSA 698 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 231/677 (34%), Positives = 381/677 (56%), Gaps = 17/677 (2%) Query: 19 WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78 + + ++ IL ++ +P+PA +LD+L NI+ ++++LL+ +++R L+F+ P++L Sbjct: 11 RGDVFFAVGVIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVL 70 Query: 79 LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138 L TL RL LN+ASTR+IL +G+ AGKV+ A G ++V GN+ IG+V+F ILV++ F Sbjct: 71 LLATLFRLGLNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQF 125 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 +V+T GA R+AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+M Sbjct: 126 LVVTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAM 185 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGA+KFV+GDAIA I+I++INI+GGL +GV Q G+ A YTL T+GDG+V QIP+L Sbjct: 186 DGATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSL 245 Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318 +I+ G+I+TR +T ++ +Q+ Q+ ++P + L A V+ +PG+P+L +L Sbjct: 246 IIAVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGI 305 Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378 ++ ++Q E + E T E L + ++ P + + Sbjct: 306 TFALFGYFAHKKKQLKLIEKTFRE-------FENTKKTSTQESLLQVAFSSQIWPQILAE 358 Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438 + E+ + + +F + G P + ++ L+ Y I + +E SG +P + + Sbjct: 359 -ETEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMM 417 Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498 I+P G A V+PA+GLNA+W+++ + + G TVVE +V+ TH+ + Sbjct: 418 VIDPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKS 477 Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558 H+AE RQ QL+ + L +++P + + + ++ +L+ EKV + + I Sbjct: 478 HSAEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIF 537 Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA----L 614 E LA+ A + D LT VR L +T +++I + LER LL + Sbjct: 538 EVLADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVI 597 Query: 615 QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 G + P D L+ Q + + LGA PVLLVN +R L + L R++P L V+S Sbjct: 598 TKGLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISV 657 Query: 675 LELSDNRHIRMTATIGG 691 E+ + + I Sbjct: 658 NEVPHHIKLNSLGVIQA 674 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 218/693 (31%), Positives = 371/693 (53%), Gaps = 25/693 (3%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 +A LR L +++LL +SMMV+P+P +D L FN+ L++++L+ A+ Sbjct: 1 MANALRRFTEYAPAN-PDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAAL 59 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + L+F++ P ++L +T+ RLAL VA+TR+IL EG AG ++ FG F++ GN Sbjct: 60 YVSTPLDFSSLPGVILLSTVFRLALTVATTRLILAEG-----EAGSIIHTFGSFVISGNI 114 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 +G V+F+++ ++ FMV+ KGA R+AEV ARF LD +PGKQMAIDA+L G I DE+++ Sbjct: 115 VVGFVIFLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRR 174 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 RR+ + +E+ YG+MDGA KFV+GD+IAG++++ IN++GG+ +G+L GMS YT Sbjct: 175 RRAALEKESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYT 234 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301 LLTIGD L++QIPAL++S A +VTRV ++ ++GE + NQL ++ + L+A VL Sbjct: 235 LLTIGDALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVA 294 Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLED 361 +G VPG P VF +L + + + V T N + Sbjct: 295 MGFVPGFPLPVFF-----MLAAVFAAASFVKGDVLDADKVDATTVTPAESQTPNVAAQPN 349 Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421 +G+ + L +D EL I I + + ++G + P + + + L +++RI Sbjct: 350 PIGVFLAPSLTNAIDQV---ELRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRID 406 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 ++GV + P + L++ G + IW+E + + + G Sbjct: 407 VEGVPVEQDLINPAQ-LSLADDLKKIESSGIPFRHD-PETHRIWVEQSHEPALKAAGIRH 464 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 S ++A ++ ++ HA L G QE +QLL R+ QE L ++++ + + VL Sbjct: 465 HSPSELLAMRVHATLTCHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTT-PIPRIADVL 523 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 + LL E +PIR+ R +LE LAE + + + LT VR + R I ++ + Sbjct: 524 RRLLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVRSGMKRQICHRY-GRHGVLPAFV 582 Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 ++ E ++ A++ LE ++ LL+Q ++ S P++L + +R Sbjct: 583 MERETEDVVRCAVRETAAGPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRR 642 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + FL R+ +L VLS +L+ + I+ +I Sbjct: 643 FVRGFLTRNGIELAVLSYQDLASDFKIQPVGSI 675 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 231/708 (32%), Positives = 377/708 (53%), Gaps = 30/708 (4%) Query: 3 NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62 ++ A + A +++ + +++L ++MM++P+P F++D+L FN S+++L+ A Sbjct: 2 SVIAAVNQFAR-AASRRSDIVVAAVVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGA 60 Query: 63 MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122 ++ +F++ P+I+L TL RLAL + +TR+IL E A AG++V AFG F+VGG+ Sbjct: 61 LYISSPAQFSSLPSIILLGTLFRLALAITTTRLILTE-----ADAGQIVAAFGSFVVGGD 115 Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182 +G++VF+I+ I F+VITKGA R+AEVGARF LD MPGKQM+ID + +G I + EA+ Sbjct: 116 VLVGLIVFLIITIAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEAR 175 Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242 ++R ++ +E+ FYG+MDGA KFV+GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y Sbjct: 176 RKRDDLERESQFYGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTY 235 Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVL 299 +LLT+GDGL++QIPAL+++ AAG +VTRV + QD+ +++ QL ++ + L+AA+L Sbjct: 236 SLLTVGDGLISQIPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAIL 295 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV--------- 350 GLVPG P +VF LA+ R R+ E V Sbjct: 296 FGFGLVPGFPLIVFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHI 355 Query: 351 ----EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVH 406 +D+ + L + +G L + R S+ + +++G P + Sbjct: 356 AGNLPGAGSDLGMAHRLTLTMGEGLGERLPP---PLFAERTESLAEAILEDLGIRVPAIG 412 Query: 407 IRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPA-FGLNAIW 465 + L A +RI +GV + G P +A + L P GL +W Sbjct: 413 RLTDARLATAEFRIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVW 472 Query: 466 IESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTE 525 I+ + G EA+ VV T + ++ ++A + QE + LL R+ LT+ Sbjct: 473 IDRSHAAALDAAGVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTK 532 Query: 526 DLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRA 585 +++ VV+ L VL+ L++E VPI +MR IL+T+AE + L VR LGR Sbjct: 533 EVL-DVVSAQRLSDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQ 591 Query: 586 ITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEML--- 642 I + V L P E L A++ G + +RL A E L ++ Sbjct: 592 ICFRLADSNRIVSAYLLTRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGA 651 Query: 643 GAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + +L + LR + L R Q+ VLS E++ ++ I Sbjct: 652 QSRAAILTSMDLRRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYIA 699 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 656 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 231/696 (33%), Positives = 366/696 (52%), Gaps = 32/696 (4%) Query: 18 QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77 L LI++I+ M+V+PLP +LD L N+ ++VL+ A+ L + FP I Sbjct: 16 SKPELVVLCLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAI 75 Query: 78 LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137 +L TTL RLAL+++S R+ILM GH AG++++ FG F++G N +G+V+F I+ I+ Sbjct: 76 VLLTTLFRLALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQ 130 Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197 F+VITKGA R+AEV ARF LD MPGKQM+IDAD AG+I D + RRS + +E+ YGS Sbjct: 131 FIVITKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGS 190 Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257 DGA KF++GDAIAGILI+ IN++GG+++G++++ +S + +Y++L++GD LV QIPA Sbjct: 191 FDGAMKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPA 250 Query: 258 LVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316 L+IS AG +VTR+S ++Q++G +V++L S+ V+L+S+ + L+GL+PG P VFL Sbjct: 251 LLISMGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTV 310 Query: 317 TAGLLGLAWWIRGREQKAPAEPKPVKMAENN--------TVVEATWNDVQLEDSLGMEVG 368 +A L W E+ A AE + +A LG + Sbjct: 311 SASLGFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDTAFLGHPLV 370 Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHI-------RDNMDLQPARYRIL 421 L S+ + E+G L P + + + AR R++ Sbjct: 371 VILPHACAHTPSLSPQNLATSLHARVFDEVGLLLPTIVVGFAAADAIVSDAQDDARQRVV 430 Query: 422 MKGVEIGSGDAYP---GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQG 478 ++ ++ + Y G L + G + + G A W+ A Q Q G Sbjct: 431 IRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV-MAQPAQLQDIG 489 Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLH 538 A + +I ++ +E FG QE + LLD + P+L +++ + + L Sbjct: 490 IAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKEVY-RQIPVQKLC 548 Query: 539 KVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVH 598 ++L+ LL E+V IR+M+ ILETLA + D LT VR+ALGR I+ + + Sbjct: 549 EILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHRIA-RNGHMK 607 Query: 599 VIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653 VI L E + Q ++ L P +A+ L+ + AL++ + VLL + Sbjct: 608 VIVLTPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVLLASMD 667 Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +R + P L V+S E+SDN + + I Sbjct: 668 VRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 299/692 (43%), Positives = 459/692 (66%), Gaps = 4/692 (0%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 + N++ + + L P LIL IL +++LPLP F+LDL FTFNI SI++L+ Sbjct: 7 IKNISLLFNYFKKIIYKNLNSLFFPFLILSILCLLILPLPTFVLDLFFTFNIIFSIIILI 66 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 V++F + L+F++FPTILLF+TL RL+LN++STRIIL+ GHTG+ +AG V+E+FG FL+ Sbjct: 67 VSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLNGHTGSCSAGHVIESFGFFLIR 126 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD MPGKQMAIDADLN+GLI E + Sbjct: 127 GNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQ 186 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N++GGLL+G++Q+ MS+ A + Sbjct: 187 AKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIK 246 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVL 299 Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++GE+++ Q+F+N V+ S+ + Sbjct: 247 IYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIF 306 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359 GL+PGMPN +FL F+ L+W+I R + + + ++ +WND++ Sbjct: 307 CFFGLIPGMPNFIFLFFSVLFFILSWYINYR-KNINKNFSKILKFKKRKKIDISWNDIEF 365 Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419 ED L +E+ + ++ L+ +++ +RK AQ+ GFL P ++I N L +Y+ Sbjct: 366 EDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYK 425 Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 I +KGVE+ SG + + L IN + G D F WI +K+ + Sbjct: 426 IFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKI 485 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 ++++ ++ + N +I + LFG QE QQLLDR++Q PKL + L+P ++++ T Sbjct: 486 VFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQN 545 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVH 598 +LQNLL + + I+D+RTI+ETL +++ + ELT ++R+AL ITQ++F ++ Sbjct: 546 ILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYIN 605 Query: 599 VIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657 VIGL T E +LL+ + +EP +++L+ +T+ A+ Q+ P VLLVN +R L Sbjct: 606 VIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVL 665 Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LS F L VLS E+S+NR I++T I Sbjct: 666 LSNFFLNCNIILPVLSFSEISENRVIKITQFI 697 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 219/684 (32%), Positives = 374/684 (54%), Gaps = 18/684 (2%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 ++ + +++LL + MM++P+P ++D+L FN+ +I++L+VA++ L+F++ Sbjct: 11 RAPAHPDIMVALMLLLAIGMMIMPIPIIVIDMLIGFNLGFAILLLMVALYLSTPLDFSSL 70 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P ++L +T+ RLAL +A+TR+IL EG AG ++ FG F++ GN A+GIV+F+I+ Sbjct: 71 PGVILISTVFRLALTIATTRLILAEG-----DAGSIIHTFGDFVISGNIAVGIVIFLIVT 125 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 ++ FMV+ KGA R+AEV ARF LD +PGKQMAIDA+L I + EA++RR+ + QE+ Sbjct: 126 MVQFMVLAKGAERVAEVSARFTLDALPGKQMAIDAELRNNHIDQHEARRRRAALEQESQL 185 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 +G+MDGA KFV+GDAIAG++++ IN++GG+ +G+L MS+ A YTLLTIGD L++Q Sbjct: 186 HGAMDGAMKFVKGDAIAGLIVICINMLGGISIGLLSKDMSLDAAMHHYTLLTIGDALISQ 245 Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 IPAL++S A IVTRV+ +G +V+QL ++ + L+A VL L+G VPG P Sbjct: 246 IPALLLSITAATIVTRVNGPSKLKLGADIVSQLTASTQALRLAACVLLLMGFVPGFPLPP 305 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 F++ ++ G + PA + + Q + + + L Sbjct: 306 FVILAVLFAAASYVKVGAKGDEPAAKTGANVTASAPAPAQAQAQKQAAHAEALPIALFLA 365 Query: 373 PMVDFQQDGE-LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431 P + D + L I + + ++G P + R + +L +++RI + V + Sbjct: 366 PNLTHSIDKDELEQSIARVSTSVSADLGITVPRIPARIDQNLSKSQFRIDVDSVPVERDV 425 Query: 432 AYPGRWLAINPGTAAGTLPGEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490 P + L +N A L G DP +WIE + G ++A Sbjct: 426 INPTQ-LVLNDDIANIELSGIPFRQDPETAR--VWIEERHAAALKAAGIGHHRPVEILAL 482 Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550 L+ ++++A L G QE +QLL R+ QE L ++++ T+ + +VL+ LLDE +P Sbjct: 483 RLHSTLTRYAQRLVGIQETRQLLARMEQEYADLVKEVLRTA-TIPRIAEVLRRLLDEGIP 541 Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610 IR+ R +LE LAE + + + LT VR AL R I ++ V ++ E ++ Sbjct: 542 IRNTRLLLEALAEWSEREQNAVLLTEYVRAALKRQICFRYANAHRVVAAFIIERETEEIV 601 Query: 611 LQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665 +++ L+ +++LL+Q ++ S + PV+L + +R + FL R+ Sbjct: 602 RVSVRETAVGPYLVLDDWQSEKLLSQFRQIHSTIAQSQSQPVILGSMDIRRFVRGFLTRN 661 Query: 666 LPQLVVLSNLELSDNRHIRMTATI 689 L VLS +L+ ++ ++ Sbjct: 662 GLDLPVLSYQDLASEFTVQPIGSV 685 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 227/691 (32%), Positives = 358/691 (51%), Gaps = 21/691 (3%) Query: 11 PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70 N + L++ ++++MVLPLP ++D L NI LS+++L+V M+ Sbjct: 3 KKNAIQDFSGEIGIAALVVAVVALMVLPLPTMLIDALLGLNITLSVVLLMVTMYIPSATS 62 Query: 71 FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130 +AFP++LLFTTLLRL+LN+AST+ IL+ A AG ++E+FG +VGGN +G+VVF Sbjct: 63 LSAFPSLLLFTTLLRLSLNIASTKSILLH-----ADAGHIIESFGKLVVGGNLVVGLVVF 117 Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 +I+ + F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG + +EA+KRR+ + Sbjct: 118 LIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAGHLSPEEARKRRALLAM 177 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 E+ +G MDGA KFV+GDAIAG++I ++NI+ G+++G+ H M+ G AA + +L+IGD Sbjct: 178 ESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGDA 237 Query: 251 LVAQIPALVISTAAGVIVTRVSTDQ------DVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 +V+QIP+L+IS AAGV++TRVS ++ +G ++V QL ++ M ++A+L L Sbjct: 238 MVSQIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFAL 297 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDS-L 363 VPG P+ +F+ + + +R R ++ + A + + + Sbjct: 298 VPGFPSFLFVALATLIFVFGYTLRNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPSF 357 Query: 364 GMEVGYRL-IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422 + VG RL + L + R A+ +G P + I LQP Y + + Sbjct: 358 TVPVGVRLGAELAKGLDVPALDTAFQQGRHALAEALGLPFPGIAIWKADALQPDSYEVRV 417 Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482 + G L + A EA P WI A Q T Sbjct: 418 HDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAP-HWIAPAHVAQDAALSATGQ 476 Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542 V+A H+ H++ + A G QE Q +L+RV + P L + V + VL+ Sbjct: 477 RVERVIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEA-QKAVPAQRIADVLR 535 Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL+E+VPIR+MR ILE+L P + D L VR LGR I Q G ++ I L Sbjct: 536 RLLEEQVPIRNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILL 595 Query: 603 DTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALS-RQEMLGAPPVLLVNHALRP 656 D +E+ + QA++ L+P + ++ + + + + ++ + +R Sbjct: 596 DLSVEQTVRQAIKPTPAGNFLTLDPQQVEAIIMRLRGIMQGNPVETPSALAIVTSMDIRR 655 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687 + R + L L V S EL +R Sbjct: 656 YVRRMIEPHLQALNVYSFQELGGYVDLRPVG 686 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 224/703 (31%), Positives = 382/703 (54%), Gaps = 39/703 (5%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 +++ + +L+ ++MM++P+P +++D L NIALS+++L+VA + ++EF+A P Sbjct: 14 ASKRTDVIIVAFMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALP 73 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++L +TL RL+L++ +TR+IL++G+ AG +V+AFG F++ G +G+VVF+I+ + Sbjct: 74 PLILLSTLFRLSLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITV 128 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 F+VITKGA R+AEV ARF LD MPGKQM+ID DL G I EA++RRS + +E+ + Sbjct: 129 AQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMF 188 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 G+MDGA KFV+GDAIAG++I+ +N++GG+++G++Q GM AA Y+LLT+GDGL+AQI Sbjct: 189 GAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQI 248 Query: 256 PALVISTAAGVIVTRVSTDQ---DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 PAL+IS AAG +VTRV++D D+ ++V QL ++ + L+A +L +G++PG P LV Sbjct: 249 PALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLV 308 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATW------------------ 354 F+ A L G A+ + R+++A ++ E+ T+ E Sbjct: 309 FVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAAEDALES 368 Query: 355 NDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414 + + + + +G L Q L RI ++ +G P+ + + L Sbjct: 369 AERPRDSQVLLSIGTGLAEAAPLQ---PLRQRIEALCHDIRINLGVEVPLPEVYLDRSLP 425 Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALK 471 R+++ ++GV + G+ G L + L T + P W Sbjct: 426 VDRFQVELEGVPVSEGEFS-GMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHA 484 Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531 ++ Q G + A V+ L+ + ++AA+ G QE + +L+++ + +L ++++ + Sbjct: 485 DRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVL-RI 543 Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591 + L + + L+ L+ E V IR R +LE++ E I+SD LT +R L R I+ Q+ Sbjct: 544 LPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYA 603 Query: 592 PGKDEVHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV 647 + L LE L L + L + +L Q + V Sbjct: 604 DRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRRLC-DMLPEHDLTV 662 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 LLV+ LR + R + R QL VLS EL+ +++ T+ Sbjct: 663 LLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 223/701 (31%), Positives = 375/701 (53%), Gaps = 26/701 (3%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 + +L A L S + G LI+L++ MMV+P+ ILD+L NI++S+++++ A+ Sbjct: 1 MIEVLNRFARLASA-RSEVVGASLIILMIVMMVIPMGPGILDVLLAINISVSVVLVISAV 59 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + L F++FP +LL TTL RL+L +++TR IL+EG AG +V+ FG F+VGGN Sbjct: 60 LIETPLAFSSFPALLLMTTLFRLSLTISTTRQILLEG-----DAGHIVQTFGEFVVGGNV 114 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 A+G+ +F+I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI + AK+ Sbjct: 115 AVGLTIFLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQ 174 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 RRS++ +E+ +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS A YT Sbjct: 175 RRSDLEKESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYT 234 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVL 299 +L++GDGLVA IP+L++S AAG+IVTRV + + + M+ L N + + +S Sbjct: 235 ILSVGDGLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFC 294 Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATW--NDV 357 L VPGMP+ VFL +A LL ++I + KA + ++ + + +D+ Sbjct: 295 FLFAFVPGMPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSDMLSASGKSIKMDDI 354 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 ++ + RL ++ ++ R R + +++G L P+ ++ + Sbjct: 355 LHTNTFA-PLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFVEF 413 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT---VDPAFGLNAIWIESALKEQA 474 Y + GV S R + + +PG D G + + K Sbjct: 414 Y---VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKTLL 470 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + T + + + L+ Q +LF E Q+ + + + + ++L V+ + Sbjct: 471 DQHKLEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ERVLPV 529 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594 T + +VLQ LL E V I++MR+IL +L E + DP + VR L I Q + Sbjct: 530 TKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQHT-HE 588 Query: 595 DEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLL 649 ++ V L E+L+ ++ + G ++ + L+ +E + P ++ Sbjct: 589 RKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLVGNYVPAIV 648 Query: 650 VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + R + ++ SL + VLS+ E+S N I++ I Sbjct: 649 CSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 216/694 (31%), Positives = 365/694 (52%), Gaps = 22/694 (3%) Query: 12 ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 + K + L + +++PLP FILD++ F +++S+++ + A E Sbjct: 5 SLFKIDSARTYFSIFLAASFVVALLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDEL 64 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 +FPT+LL + R+++NV++TR IL G+ AG V+E FG F++GGN IGIV+F Sbjct: 65 KSFPTMLLLIGIFRVSINVSTTRAILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFT 119 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 +L+I F+V GA R AEV ARF LD +PGKQM+IDADLN +I E +A+ +R ++ E Sbjct: 120 VLIIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNME 178 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 +FYG+MDGA KF++GD I GI+I+ +NI+ GL+VG++Q GMS G AA YT LT+GDG+ Sbjct: 179 TEFYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGI 238 Query: 252 VAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309 V QI +L+++ + G+IVTRV + V E + +L ++ V+ + +G+ +P Sbjct: 239 VNQIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLP 298 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK------MAENNTVVEATWNDVQLEDSL 363 L F L ++ L + R +K + + E VE ++ + + Sbjct: 299 FLPFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKYPI 358 Query: 364 GMEVGYRLIPMVDFQQDGEL-LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRIL 421 +E+G L +V + +GE ++ +RK ++G P ++ +DN +P RY I Sbjct: 359 IVELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIR 418 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481 +KG + G G LA+ L E DP FG + WI + + AQ++GY V Sbjct: 419 IKGAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQV 478 Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 +E +++ THL+ ++ ++ EL RQ + L++ + + L E++ + L+ + V+ Sbjct: 479 LEPLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVI 538 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDP-HELTAVVRVALGRAITQQWFPGKDEVHVI 600 + LL E + IRD+ TI+E + + I + +T+ VR + + I + +++ Sbjct: 539 KQLLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAA 598 Query: 601 GLDTPLE---RLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH-ALR 655 +E ++ + QG + L R++ Q Q + ++G PVLL R Sbjct: 599 LFSDSIELDADVVNNSYQGYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFR 658 Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 + R L R + VL EL+ + A I Sbjct: 659 FAIVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 211/677 (31%), Positives = 355/677 (52%), Gaps = 29/677 (4%) Query: 19 WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78 L +L++ I+ M+++PLPA+++D L NI ++++V + A + R L F+ FP +L Sbjct: 12 RPELLILVLVITIIFMIIIPLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVL 71 Query: 79 LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138 L TTL RLAL ++++R+IL + A AG+++ FG F++G N +G V+F I+ ++ F Sbjct: 72 LITTLFRLALTISTSRLILTD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQF 126 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 +VITKG+ R+AEV ARF LDGMPGKQM+IDADL G+I + A++RRS + +E+ YG+ Sbjct: 127 IVITKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAF 186 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGA KF++GDAIA I++ +N +GG+ VG+ QH M + A ++TLLTIGDGLV QIPAL Sbjct: 187 DGAMKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPAL 246 Query: 259 VISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317 +IS +AG+IVTRV+ D ++G ++ QL NP V+L++A + +G++PG P VF++ Sbjct: 247 LISISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVMLA 306 Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377 L L + + + P + + + ++L + + Sbjct: 307 MALGTLLLMRQRQTRVVPLPAAADYAGG--------YPERIMPEALAVILQVSRANYARL 358 Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437 +++ +R +F + G P + + +++ + + Sbjct: 359 EKE----QLCERLRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNEIRADVFTLHFDML 414 Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 + PG P V A+W +E+ G + A + +++ Sbjct: 415 RRVIPGDR----PCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVMLT 470 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 H E FG QE + LLD++ P L ++++ T+ + ++LQ LL E++ IR ++ I Sbjct: 471 HHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHA-TVQRIAELLQRLLMERISIRHLKLI 529 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 +E +A AP + D L VR AL R I Q+ + + VI L + +E L +L Sbjct: 530 MEAMALWAPREKDVSALVEHVRCALARYICHQFA-ADNLLRVIMLSSEVEETLRDSLHTT 588 Query: 618 GG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672 L P +++ L+ AL + VLL +R + ++ L VL Sbjct: 589 SAGTFLNLGPQVSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEVL 648 Query: 673 SNLELSDNRHIRMTATI 689 S EL+++ + + TI Sbjct: 649 SFGELTESVTVNVIKTI 665 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 235/692 (33%), Positives = 363/692 (52%), Gaps = 38/692 (5%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + + + + I+ +M+LPLP I+D L NIA+ +LL+A++ + F++F Sbjct: 19 RRAGYSDVVLAFAAVTIIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSF 78 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 P++LL TTL RL+L++A TR IL+E + G +VE FG + GGN +G VVF+I+ Sbjct: 79 PSVLLLTTLFRLSLSIAITRSILLEAN-----GGHIVETFGSLVAGGNLVVGFVVFLIIT 133 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 ++ F+VI KGA R+AEV ARF LD MPGKQ++ID+DL AGLI +DEAK++R + E+ Sbjct: 134 VVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQL 193 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 +GS+DGA KFV+GDAIAGI+I++IN++GGL +GVLQ GM + A +Y++LTIGDGLV+Q Sbjct: 194 HGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQ 253 Query: 255 IPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 IPA++ + AAG++VTR + D+D +GE + Q+ P V+L++ + + VPG P L Sbjct: 254 IPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKL 313 Query: 312 VFLLFTAGLLGLAWWIRGREQK-APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370 VFL+ + LLG A W K + +++ L +E+ Sbjct: 314 VFLMLSVVLLGFAAWRYRHHHPVLRRAFKVPEGERPAEEKTVNEDEIAPPAPLQLELAPS 373 Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNM----DLQPARYRILMKGVE 426 L + RI I ++ +E G PV ++ + D YR+ G Sbjct: 374 LAAAF---GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAFGAR 430 Query: 427 IGSGDAYPGRWL--AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 + G P A A LPG P G W G + + Sbjct: 431 LAFGRLSPNAQFRPARAGDANAPKLPG--FFPPLAGE---WTG--------QAGADIRDG 477 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 V+ H + + A G QEA L R+ ++ P L ++++ VV + VL+ L Sbjct: 478 LATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVLRRL 536 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 ++E VPIR++R E + + + D LT VRVAL R I ++ G+ + V+ + Sbjct: 537 VEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLLIHP 596 Query: 605 PLERLLLQALQ-----GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 LE L Q+++ + P LA RL A+ + L+R + G PVLL + +R L Sbjct: 597 ELEDRLRQSVRVAGGATQLAISPELAGRLGAEVRSHLAR-QGEGIKPVLLCSLDVRRHLR 655 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 + L +L VLS EL+ + I + Sbjct: 656 KLLEIDFFELPVLSYQELAPDLRIVQAGQVNA 687 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 17/682 (2%) Query: 22 LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81 L ++LLI+ MV+P+ A +LDL +IA + ++L++A ++ +F AFP +LL + Sbjct: 16 LIITGVLLLIVLSMVIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVS 75 Query: 82 TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141 L+RL+LN++STR+IL G GA AAG V+EAF F+ GG+ +G+ VF ++ ++NFMVI Sbjct: 76 LLIRLSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVI 135 Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201 TKG+GR+AEV ARF LD +PGKQ+AID DLN+G I DEAK+RR+ +E F+GS+DGA Sbjct: 136 TKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGA 195 Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261 SKFV+GDAIAG++I +IN+ GL GV+ HGM + A +Y+ LTIGDGLV+QIPAL+ S Sbjct: 196 SKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITS 255 Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321 AA ++++R + + + Q SN V + A + +GLVPGMP LVF A L Sbjct: 256 MAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLG 315 Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-PMVDFQQD 380 AW+IR R+ K E + + DV D + +E+G LI +D + Sbjct: 316 VAAWFIRARQDKTRPEDAAPVESHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRG 375 Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 L RI ++R A+ G + P V I D Q Y + ++GV G G P LA+ Sbjct: 376 --LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLAL 433 Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500 L GE +P +G A WI +++A I G TVV V++THL ++ + Sbjct: 434 GAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTNL 493 Query: 501 AELFGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552 L Q+++ + AQ + + +VP V L VL+ LL+E++ +R Sbjct: 494 PALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISVR 553 Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL-- 610 ++ I + + E A + P + VR L IT+Q+ + ++ L E + Sbjct: 554 NLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIAR 612 Query: 611 --LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 ++ + G G P + RL Q LS G VL V R L+ L + Sbjct: 613 SEAESARAGNGAIPQIQKRLADALQATLSGLPP-GIEVVLAVPDHRRRLVRMMLSSAGIA 671 Query: 669 LVVLSNLELSDNRHIRMTATIG 690 VL E+ +R+ T+G Sbjct: 672 TPVLGLDEIDPGAQVRLRGTVG 693 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 223/716 (31%), Positives = 366/716 (51%), Gaps = 45/716 (6%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 + +LK + L++ I+S+M+LPLP +DLL NI +S+ +L+V M+ Sbjct: 1 MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIA 60 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 +AFP++LLFTTL RL+LN+AST+ IL+ A AG ++E+FG +VGGN +G+VV Sbjct: 61 ALSAFPSLLLFTTLFRLSLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVV 115 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F I+ + F+VI KG+ R+AEVGARF LD +PGKQM+IDADL +GL+ +EA+K+R+ + Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 E+ +G MDGA KFV+GDAIAG++I +INIV G+ VGV HGMS G AA +++L++GD Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235 Query: 250 GLVAQIPALVISTAAGVIVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 +V+QIP+L++S AAGV++TRV+ + + +G+++ +QL S+ + +A +L Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGR-----EQKAPAEPKPVKMAENNTVVEATWNDVQL 359 VPG P +F+L A L + + + E + ++ + + + Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355 Query: 360 EDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418 VG R+ P + L + R + E+G P V + + L A + Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415 Query: 419 RILMKGVEIGSGDAYPGRWL------------AINPGTAAGTLPGEATVD-----PAFGL 461 +L+ V S + + A+ A + A G Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475 Query: 462 NAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMP 521 WI+ E A +V A ++A I HA G QE Q +LD++ + P Sbjct: 476 ATHWID----EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531 Query: 522 KLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVA 581 L +++ ++ T + VL+ LL+E++ IR++RTI+E+L + D LT VR Sbjct: 532 GLVAEVL-KILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGD 590 Query: 582 LGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEAL 636 L R + + G+ + + D E+ + QA++ L P A RL+ + Q + Sbjct: 591 LSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLV 650 Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 L+ + +R + R + R + L V S EL ++ +R + + Sbjct: 651 G--ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQ 704 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 216/676 (31%), Positives = 371/676 (54%), Gaps = 28/676 (4%) Query: 17 TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76 Q + ++L+ + MM+LPLP +++D+L T N+ S+++LL+A++ L+ + FP+ Sbjct: 19 AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS 78 Query: 77 ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136 +LL TTL RL+L ++++R++L++ + AG +V+AFG F+VGGN +G+VVF I+ I+ Sbjct: 79 LLLITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVGLVVFTIITIV 133 Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196 F+VITKG R+AEV ARF LDGMPGKQM+ID DL AG+I D A+ R V QE+ F G Sbjct: 134 QFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLG 193 Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256 +MDGA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM A +Y++L+IGDGL QIP Sbjct: 194 AMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIP 253 Query: 257 ALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314 +L+IS +AG+IVTRV + Q++ ++ +Q+ P ++L+A VL LL L+PG P + Sbjct: 254 SLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLA 313 Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374 F+A L I R +K+ V+ E +++V + Sbjct: 314 FFSALLAL--PIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSP------------ 359 Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434 +L+ I ++R ++ G P V+I + + +L+ + S P Sbjct: 360 --TLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSI-P 415 Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494 + + G A + T+ G W+ + +AQ G V S ++ L Sbjct: 416 AQADYLLIGADASVVGDSQTLPNGMGQ-ICWLTKDMAHKAQGFGLDVFAGSQRISALLKC 474 Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 ++ +H E G QE + L++ + + +L ++L + + + + LQ L+ E+V IRD+ Sbjct: 475 VLLRHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRLVSERVSIRDL 533 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614 R I TL + AP + D LT VR+AL R I ++ P + ++ + +E L+ +++ Sbjct: 534 RLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESI 593 Query: 615 QGGG-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673 + G L+ R Q + + + A ++ + R L + +L + +LS Sbjct: 594 RQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILS 653 Query: 674 NLELSDNRHIRMTATI 689 EL + I++ +I Sbjct: 654 WQELGEESLIQVVESI 669 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 240/680 (35%), Positives = 377/680 (55%), Gaps = 17/680 (2%) Query: 23 AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82 I ++ I+ +MVLP+PA++LD+ T + ALSI++ +F ++ L+F++FP+ILL + Sbjct: 15 LLAIGLMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASL 74 Query: 83 LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142 +LRLALNV+ST++I+ EGHTG AAG V+E F F++GGN +G+VVF +LVI+NFMVIT Sbjct: 75 VLRLALNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVIT 134 Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202 KGAGR+AEVGARF LD MPGKQ+AID+DL G I +EAK RR +EA F GS+DGAS Sbjct: 135 KGAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGAS 194 Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262 KFV+GDAIAG+LI +N++ G+ GV+ H +S+ A +Y++LT+GDGLV+QIPA+++S Sbjct: 195 KFVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSV 254 Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322 AA +++++ + + + QL N + + + A +L + L+PG+P L F+ AG Sbjct: 255 AAALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAA 314 Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382 +A++ + + A + + D D + +EV L+ MV ++G Sbjct: 315 VAYFTKKAADEKAASEETKPEDAAPKAPK--IGDSIYADEIHLEVAPDLVNMVLVGENG- 371 Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 RI IR+ A+E GF+ P + + DN L+ YR+ ++GV + SG PG+ LA+ Sbjct: 372 FESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIE 431 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 L GE +P + A W+ SA K++ VVE V+ATH+ +I + + Sbjct: 432 ENQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSL 491 Query: 503 LFGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554 +F R + LD + A + ++ +PG VT L VL+ LL E+VPIR++ Sbjct: 492 VFTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNL 551 Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL--- 611 I+ET+AE P + +VR L I + + + +I L T E+ Sbjct: 552 FLIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQLSTSWEQKFTEYE 611 Query: 612 ---QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668 ++ L P + L+ Q L+ G + + R L L + Sbjct: 612 VTNESGGSDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSSRRRRFLQTVLASKGIR 671 Query: 669 LVVLSNLELSDNRHIRMTAT 688 V++ E++ + Sbjct: 672 NAVVAYEEINSKSKPYIIGV 691 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 200/690 (28%), Positives = 348/690 (50%), Gaps = 17/690 (2%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 + + + + ++ L+L M++LPLP +DL+ T N++ SI++LL+++ + Sbjct: 4 IKPLAAIARQKDVFLVLVFALVLLMVILPLPPAAMDLMITLNVSASIIILLMSLQMHNPV 63 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 +F+ FP +LL TTL RL++++++TR+IL+EG AG++VE FG +GGN A+G+V Sbjct: 64 QFSTFPALLLVTTLFRLSISISTTRLILLEG-----DAGRIVETFGQVAMGGNLAVGLVT 118 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F+I+ ++ F+VITKGA R+AEVGARF LDGMPGKQM+IDAD+ AG + + +A+ R + Sbjct: 119 FLIITVVQFLVITKGADRVAEVGARFTLDGMPGKQMSIDADVRAGNMDQLDARHARQNLE 178 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +EA +G+MDGA KFV+GDAIAG++I VIN+VGG+ +G+ Q G+ G A Y LLT+GD Sbjct: 179 REAKLFGAMDGAMKFVKGDAIAGLVITVINLVGGVAIGMAQRGVGFGEALSLYALLTVGD 238 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GLVAQIPAL+IS AAG +VTRV+ D+G ++ Q +N ++++ ++ L GLVPG Sbjct: 239 GLVAQIPALLISVAAGNMVTRVTNPNGMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPG 298 Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367 P +F+ + + G W R+ + + + +++ ++ + V Sbjct: 299 FPTWIFVSVGSAMTGGVIWTIRRQHRDVLSAQTDWSLRLD-LLQRQCAEIAMRTGAKEAV 357 Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427 L + ++R AQE G + + + P Y+I + Sbjct: 358 RLILPKEIYKLDVTAFFSAFEAVRISIAQEYGIPT-GYWLFEVDEGSPHSYQIYVNQELA 416 Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487 G + L G + + + +++ + Sbjct: 417 DCGIFRADSLFVKAHTSYLDAL-GIPWLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQ 475 Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547 + HL + + + Q +L+ V P L DL + + V++NLL E Sbjct: 476 LLMHLKRVAVERLDVMASLQNITAILNEVQTNNPALVGDL-REAASNNQIAGVIRNLLRE 534 Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607 ++P+ ILE + + + + DP L VR+ + IT+++ + V+ + +E Sbjct: 535 RIPVTSRVRILEGILKWSQKRPDPGYLAQKVRIEIADFITKRFA-ADGFLPVVVVSPTVE 593 Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662 L+ + ++ LEP ++ + Q ++ + G PVL++ +R + L Sbjct: 594 SLMREGMRNTEEGNFLILEPSISAYIAKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNIL 653 Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 L VL+ E++ I + + Sbjct: 654 YEHGIHLPVLAYQEITPETVIYPVGFLLAE 683 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 222/684 (32%), Positives = 377/684 (55%), Gaps = 23/684 (3%) Query: 23 AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82 ++ + + +++PLP F+LDL+ +A S++V + A + E +FP++LL Sbjct: 11 FAILIAVSFVIALIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMG 70 Query: 83 LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142 + R+++N+++TR IL G G+V++ FG+F++G NF +GIV+F+IL++ F+V Sbjct: 71 IFRVSINISTTRAILTTGDP-----GQVIKQFGNFVIGSNFVVGIVIFIILIVFQFIV-A 124 Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202 G+ R AEV ARF LD +PGKQMAIDADLN LI E EAK++R+ + E +FYG+MDGA Sbjct: 125 NGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAG 184 Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262 KFV+GD + +L+ V+NIV GL+VG++Q G+S G AA YT LTIGDG+V+QI +L+++ Sbjct: 185 KFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAM 244 Query: 263 AAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320 +AGVIVTRV +D +V + +L N V+ +A+ L+G+ +P + F+ L Sbjct: 245 SAGVIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVL 304 Query: 321 LGLAWWIR---GREQKAPAEPKPVKMAENNTVVEATWN----DVQLEDSLGMEVGYRLIP 373 + + + ++++ E + + EA N + + + +E+G + Sbjct: 305 GIIGYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVELGLNIAA 364 Query: 374 MVDFQQDGEL-LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGD 431 +V + +GE ++ +RK Q++G P ++ +DN QP +Y I +KGV + SG Sbjct: 365 LVKQKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGV 424 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 G LA+ L E T DP FG + WI E AQ++ Y V+E +++ TH Sbjct: 425 LKAGHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITH 484 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 L+ ++ ++ EL RQ+ + L+D +A E L +++ + + + VL+ LL E + + Sbjct: 485 LDVVLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISV 544 Query: 552 RDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--R 608 RD+ TI+E + + I +D +TA VR + + I +Q +++ + L +E Sbjct: 545 RDLPTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDT 604 Query: 609 LLLQALQGGGGLEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNH-ALRPLLSRFLRRS 665 ++ G L L L + + ++ +++ ++ G PV+L R R L R Sbjct: 605 EIVNTPYYGYALNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERY 664 Query: 666 LPQLVVLSNLELSDNRHIRMTATI 689 + VLS ELS + A I Sbjct: 665 QLDVPVLSISELSPETEVEQIALI 688 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 228/573 (39%), Positives = 347/573 (60%), Gaps = 16/573 (2%) Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190 + L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V Sbjct: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250 EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S A + Y L+TIGDG Sbjct: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 Query: 251 LVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310 LVAQIP+L++STAA +IVTRVS + D+ + NQL ++PSV+ + ++ +L +VPGMP+ Sbjct: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA----ENNTVVEATWNDVQLEDSLGME 366 L FLLF+A L W + + A AE K ++ + + +W + L + + + Sbjct: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247 Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426 +GY+L+ +VD Q L RIR +R+ + G L P + IR+N L+P++Y I + G++ Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307 Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486 D + +A+ G + G DPA+G+ WI++A K +A GY V+++++ Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546 V+ATH+N ++ + +LF + QL +R++ P+L EDL + + L KV + LL Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426 Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606 E V +RD+ TI L + + D L A VR+AL R+IT + K E+ V L+ L Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485 Query: 607 ERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 E LL QA QGG + +P + ++ + + + + G PVLLV LRP Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LL+R+ R P L VLS E+ D +++ + Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 227/679 (33%), Positives = 389/679 (57%), Gaps = 16/679 (2%) Query: 20 QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79 L + +++ + M+++P+P+ +LD+LF FN+ S++VL+++++T+ EF++FP+++L Sbjct: 2 SGLYTTLFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLML 61 Query: 80 FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINF 138 F L L V+S R IL+ G+ GA A AFG ++G GN+ +G+V+FV+L+I+ + Sbjct: 62 FAVFFHLVLIVSSARAILVTGNPGALA-----TAFGKLIMGQGNWVVGLVIFVVLLIVQY 116 Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198 MVIT G RI+EV ARF LD MPG+QMAIDADL+AG I +EA+++R + +E+DF+G+M Sbjct: 117 MVITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAM 176 Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258 DGAS+FVRG+ +A L V+N +GG++VG+L G + A Y + IG L I +L Sbjct: 177 DGASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGVALQIAISSL 235 Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318 +S +A ++V RVS++Q +GE++ ++L + P ++ + VL + L+PG+P L+ + Sbjct: 236 ALSLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGV 295 Query: 319 GLLGLAWWIRGREQKA-PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377 L+ + + A P + + ++ E + EA V D++ +E GY L+P+ D Sbjct: 296 LLIWFGRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVG-VDAVELEFGYELLPLFDT 354 Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437 ++L I +RK ++E GF P + I DN+ L+P +YRI ++GV G G G Sbjct: 355 TSGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLL 414 Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 LA+ G+ + G T +P F L+A WI + K +A+ G TVV+ T+V THL ++ Sbjct: 415 LAMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLK 474 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 A+L RQ + ++D V + P + E+L V +L + V + LL E++P+RD+ + Sbjct: 475 SSLADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRV 533 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 E + + D E + R A + + + + VI L +ER L+++ Q G Sbjct: 534 FELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPG 593 Query: 618 G----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVL 672 L +++ + ++A VL+V+ +R L L R+ L +L VL Sbjct: 594 SEIGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVL 653 Query: 673 SNLELSDNRHIRMTATIGG 691 S E+ D +++ + ++G Sbjct: 654 SYNEIMDAKYV-VVGSVGA 671 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 224/691 (32%), Positives = 362/691 (52%), Gaps = 23/691 (3%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 + LK+ + + + +L +++PLPA++LD N+A S+ +L+ A+ + L Sbjct: 5 MKVLLKARNSSDVVLAVAMAAVLGALIIPLPAWLLDAGLAVNLAASVALLVAALRARDAL 64 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 + +FPT+LLFTTL RLALNV+STR+ L EGH AG V++AFG F+V G++ +G VV Sbjct: 65 KVTSFPTLLLFTTLFRLALNVSSTRLALAEGH-----AGDVIQAFGEFVVRGDYVVGAVV 119 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F IL ++ +V+TKGA R+AEV ARF LD MPGKQM+IDADL AG I + +A++RR ++ Sbjct: 120 FAILTLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLE 179 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +E+ +G+MDGA KFV+GD IAG++I+ +N++GG ++GVLQ GM + AA ++ L+ IGD Sbjct: 180 RESQMFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGD 239 Query: 250 GLVAQIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306 GLV+Q+P+L I+ AAG++VTRV++ + +G ++ Q F + + A + L L+P Sbjct: 240 GLVSQVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMP 299 Query: 307 GMPNLVFLLFTAGLLGLAWWIRG----REQKAPAEPKPVKMAENNTVVEATWNDVQLEDS 362 GMP++ FLL GL GL + + ++ P + Sbjct: 300 GMPHVTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGAPPESAASPVGVSP 359 Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRIL 421 L +++ L + + + + + +R + E+G P + +R L P YR+L Sbjct: 360 LTLDMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVL 419 Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479 + V G G PG A+ P + EA +P+ G I + + + Sbjct: 420 VDEVPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQV 479 Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539 + +V+ H+ ++ AA+L G Q+ Q LL+ + + P L ++ + V L L Sbjct: 480 PLRRPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTD 538 Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599 VL+ LL E V IRD+R ILE L + D L R AL R ++ ++ P ++ Sbjct: 539 VLRKLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLSHKFAP-TGPLYA 596 Query: 600 IGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659 +D +E +L G +P +L ++ + VLL +R L Sbjct: 597 YLVDPEVEEVLRGMGPRGLAPDPERVAEILEGVRQVATE-----GRAVLLTAPDVRRPLR 651 Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R + P + VL+ EL IR + Sbjct: 652 RLCEGAFPDVAVLTYGELDGALQIRPIGRLS 682 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 203/692 (29%), Positives = 341/692 (49%), Gaps = 66/692 (9%) Query: 10 LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69 LP + + +I+ MMVLP+P ++D + FN+A + +VL+ ++ + L Sbjct: 5 LPPVAAIAKRTDILFAGFFAVIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVL 64 Query: 70 EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129 + + FP ++L TL RLAL +++TR++L EG AG+++ AFG F+V GN +G+++ Sbjct: 65 DISTFPAVILIGTLFRLALTISTTRLVLAEG-----DAGEIISAFGSFVVAGNVVVGLIM 119 Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189 F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL +G I + A+KRRS++ Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179 Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249 +E+ F+G+MDGA +FV+GDAIAG++I+ +N++GGL +G+ Q G+S AA+ Y+LL+IGD Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239 Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307 GLV+QIP+++++ AAG +VTRVS D+ ++G ++ QL P + ++AA+ GL+PG Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299 Query: 308 MPNLVFLLFTAGLLGLAWWI--RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365 P V GL LA + + R Q + + N A + + D + Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGDPIVA 359 Query: 366 EVGYRLIPMVDFQQ-DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424 + + ++ G L RI + A+ +G V + + I ++ Sbjct: 360 TLSAATMSRLEANNLGGHLDARI----RVAARAVGVAITVPTFNADPRMGEDMIHIQVEN 415 Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484 V G Sbjct: 416 VPAGLISCKAD-----------------------------------------------RP 428 Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544 + ++A + ++ +H +F +A Q L + + KL D V V+ L V++ L Sbjct: 429 AELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRL 487 Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604 LD V + R +LET+ + P + DP +L R AL R I + + V+ Sbjct: 488 LDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSP 547 Query: 605 PLERLLLQALQGGGGLE----PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 ER + E RL +T++AL G PV+++ LR L Sbjct: 548 EWERFVRSYSDASDKTEKEEISEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQA 607 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 + R ++ V++ E+ + + +G + Sbjct: 608 LMIRHNCRVPVVAIEEIDHDITSDVVGMVGVQ 639 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 209/672 (31%), Positives = 345/672 (51%), Gaps = 72/672 (10%) Query: 33 SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92 +M+LPLP ++D L NI LS+++L+V M+ ++ ++FP++LLFTTLLRL+LN+AS Sbjct: 29 GLMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAS 88 Query: 93 TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152 T+ IL+ A AG ++E+FG +VGGN +G+VVF+I+ + F+VI KG+ R+AEVG Sbjct: 89 TKSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVG 143 Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212 ARF LD MPGKQM+IDADL G + DEA+++R+ + E+ +G MDGA KFV+GDAIAG Sbjct: 144 ARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAG 203 Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272 ++I ++NI+ G++VGV HGM+ G AA + +L++GD +V+QI +L+IS AAGV++TRV+ Sbjct: 204 LVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVA 263 Query: 273 TDQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327 + +G + QL SN ++ ++ +L VPG P ++FLL A + + I Sbjct: 264 NENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTI 323 Query: 328 RGREQK--APAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLIPMVDFQQDGE 382 +++ + K + EA D L M + +L ++D + Sbjct: 324 WRKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLDPAR--- 380 Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442 L I S R++ + +G P + I LQ +Y +L+ V + Sbjct: 381 LDQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDVPETRAELE--------- 431 Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502 + +A + A Sbjct: 432 -------------------------------------NTDDMQAALARQAISPLHARAHL 454 Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562 G QE Q +L++VA + P L + V + + VL+ LL+E++P+R++++ILE+L Sbjct: 455 FVGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESLV 513 Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG---- 618 P + D LT VR LGR + G ++ + LD +E+L+ Q+++ Sbjct: 514 VWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGNF 573 Query: 619 -GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677 L P A++L+ Q + + P ++ + +R + R + L L V S EL Sbjct: 574 LALPPEQANQLVEQVERIVGDHAQ--HPLAVVASMDVRRYVRRMIEARLTWLQVYSFQEL 631 Query: 678 SDNRHIRMTATI 689 ++ + Sbjct: 632 GSEVQLQPIGRV 643 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 232/702 (33%), Positives = 365/702 (51%), Gaps = 39/702 (5%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 L ++ L I+ ++++ +LPLP LD + + N+A S+++L V+ + + F+ Sbjct: 40 RLGASPRADLFLAGFIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFS 99 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 +FP +LLFTTL RLALN+AS ++IL+ + AG V++AFG +VG N +G VVF++ Sbjct: 100 SFPALLLFTTLFRLALNIASCKLILLHAN-----AGHVIDAFGRLVVGNNVVVGGVVFLV 154 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 + ++ F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG+I DEA++RR + QE+ Sbjct: 155 IAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQES 214 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 +G+MDGA KFV+GDAIAG++I INIV G+ VG L HGM +G A + Y +LT+GDG+ Sbjct: 215 QMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMA 274 Query: 253 AQIPALVISTAAGVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308 +QIP+L++S AAG++ TRV+T +GEQ+ QL ++P +L++A VL +VPG Sbjct: 275 SQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGF 334 Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368 P F L GL A R+ AP+ + V + + Sbjct: 335 PKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA 394 Query: 369 YRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427 L + + +L + S + + ++G + P + + D+ YRI ++ V Sbjct: 395 VSLSDDLRTTLNLAQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIYLQDVLA 454 Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQIQGYTVVE 483 G PG L LP A P AFG A+WI+ + Sbjct: 455 AHGALKPGWLLW----DGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKWLT 506 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 + +A H+ ++ QHA EL G QE Q L+ V +E P+L +L +V L + +VL+ Sbjct: 507 SEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELT-RLVPLQRVTEVLRR 565 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602 LL E+VPIR++R I E+L AP + D L +VRV L R IT + ++ V+ Sbjct: 566 LLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVLF 625 Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE----------MLGAPPV 647 + L+ + A+ L + + Q + + + Sbjct: 626 EQNLQERIESAVMRTKQGNFLALSSAIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPRLA 685 Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 ++V R + L+ LP+L VLS E+ ++ + + Sbjct: 686 VMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWV 727 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 229/685 (33%), Positives = 363/685 (52%), Gaps = 21/685 (3%) Query: 16 STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75 + LA +L +L +++LP+P+F+LDL + S ++L ++ + +E ++FP Sbjct: 16 IARHADLAVGAGMLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFP 75 Query: 76 TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135 ++LL TTLLRLAL +AST++IL+ H AG+++ AFG +VGGN A+G+VVF++L Sbjct: 76 SLLLVTTLLRLALAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSA 130 Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195 I F+V+ KGA R+AEV ARF LDG+PG+QM+IDADL GLIG EA + R E+ +E FY Sbjct: 131 IQFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFY 190 Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255 GS+DGA KFV+GDAIAG+++ ++NI GGL VG+ Q GMS+ A +YT+LT+GDGLV+QI Sbjct: 191 GSLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQI 250 Query: 256 PALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 P+L++S +AG++VTRVS+ ++G + QL ++P M+++ L +PG P++ Sbjct: 251 PSLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQ 310 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA---ENNTVVEATWNDVQLEDSLGMEVGY 369 F+L L+GLA + + A +P A + V+ +DV+L S + V Sbjct: 311 FVLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRVRL 370 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 + EL ++ +R+ +G P + + + L RY + + V Sbjct: 371 G-SAACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVDIDDVPFSG 429 Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489 G G L + T T+ G P ++W+ + A+ ++ Sbjct: 430 GTLLAGHVLV-SGDTERVTMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMKSSANGLLC 487 Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549 HL + + A G QE + LL+ V E +L + VVT + VL++LL+++V Sbjct: 488 DHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRV 546 Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE-VHVIGLDTPLER 608 IR+MR ILE + + + + R+AL + + + VH L+ E Sbjct: 547 SIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEA 606 Query: 609 LLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV--LLVNHALRPLLSRFLRRSL 666 L + G EP L A E+L R V ++ LRP L R LR Sbjct: 607 ELEAQIDLGPDGEPRCV--LDADRLESLQRGFAARNDVVRLVVTTAVLRPHLERVLRTLG 664 Query: 667 PQLVVLSNLELS-DNRHIRMTATIG 690 + VL+ E+ D +R+ AT+ Sbjct: 665 MRTDVLAMEEIPLDEYRVRVIATLA 689 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 209/697 (29%), Positives = 341/697 (48%), Gaps = 71/697 (10%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 +AA L + + L + ++ I+++++LPLPA ++D+L NIA+ +++LL + Sbjct: 1 MAASLISRLPRGAVRPADLMLIVAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTL 60 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123 + L+F+ FPT+LL +TL RL+L++A+TR+IL A G +++ FG + GGN Sbjct: 61 HITKPLDFSTFPTVLLLSTLFRLSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNL 115 Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183 +G+VVF+I+ ++ F+VI+KGA R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++ Sbjct: 116 IVGLVVFLIVTVVQFIVISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARE 175 Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243 RR + E+ +GS+DGA KFV+GDAIA I+I++IN+VGGL VGV HGM G A + ++ Sbjct: 176 RRRTLELESKLHGSLDGAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFS 235 Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLG 300 +LTIGDGLVAQIPAL + AAG++VTR S D +G +V Q+ S P V+ +A + Sbjct: 236 ILTIGDGLVAQIPALFSAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCL 295 Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK---APAEPKPVKMAENNTVVEATWNDV 357 L+ L+PG P VF+ L A W A + A Sbjct: 296 LMALIPGFPAAVFIGIAFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAP 355 Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417 + L +E+ + ++ L R + + +G P + + Sbjct: 356 RPVRPLVLEIAAPALDAAQAER---LRARFVLVIEAVQARLGLPMPAGEVTTRL------ 406 Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477 + G+ A +G + G Sbjct: 407 ---------LPEGERPRWTLSAYEAPVGSGEVDGP------------------------- 432 Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537 +A + L+ ++AA G QE +L+R+ + P L +++V V+ + Sbjct: 433 ------FEEAIAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVV-RAVSSPRI 485 Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597 +VL+ L +E+V +R++R +LE +AE + + + RVAL R I Sbjct: 486 AEVLRLLAEEEVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHM-ADGRF 544 Query: 598 HVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 V+ + LER LQ G + P A L+ + ++ ++ + Sbjct: 545 PVLVVGGRLERFFRDNLQTVEGVAHLAMPPDQARTLIGMIRSETAKCGAR----AIITAY 600 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 LR L + L L +L EL+ + + T+ Sbjct: 601 DLRRPLRQLTAGDLFGLPILCYNELTPALPLDVVGTL 637 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 206/690 (29%), Positives = 337/690 (48%), Gaps = 67/690 (9%) Query: 7 MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66 +R A Q + + +++M+VLPLP +LD+L FN++ + +VL+ + + Sbjct: 2 KVRSSAIAMLAQRTDMLLAVFFASVVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLK 61 Query: 67 RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126 LE + FP ++L TL RLAL ++STR++L + A AG+++ AFG F+V GN +G Sbjct: 62 SVLEISTFPAVILIGTLFRLALTISSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVG 116 Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186 +++F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL G I + A+KRRS Sbjct: 117 LIIFLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRS 176 Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246 + QE+ F+G+MDGA +FV+GDA+AG++I+ +N++GGL +G+ Q G+S AA YTLL+ Sbjct: 177 RLEQESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLS 236 Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGL 304 IGDGLV+QIP+++++ +AG++VTRVS D + +G + +LF P + ++AA+ G Sbjct: 237 IGDGLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGF 296 Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364 VPG P V L GLA+ + R A + N+ + + D + Sbjct: 297 VPGFPTGVLGAIGLCLAGLAFMVHRRRAGPAAAGSANAVESANSY---PLDRTKYGDPVI 353 Query: 365 MEVGYRLIPMVDFQQDGELLG-RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 V + ++ + GE+L RIR A+ +G V + + + ++ Sbjct: 354 ATVAVETLARLEAMRLGEMLDGRIRMA----ARAVGVSVTVPTFNADPRMAEDLIHLQVE 409 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 V G P R Sbjct: 410 NVPAGLVSCGPERT---------------------------------------------- 423 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 + +A + ++ +H LF +A Q L + + KL D V V L V++ Sbjct: 424 -AEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAID-VATQVPLMLTVAVVRR 481 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LLD V + R +LE + HA P L + R AL + I + + + L Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540 Query: 604 TPLERLLLQALQGGGGLEPGLADR---LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660 + + G + +A+R L + ++AL G P+++V R L Sbjct: 541 AEWDHFIRSYDAAGATEKIEIAERLRLLAEKARQALEDANERGYDPIIIVPGEWRLLTQT 600 Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + ++ VL+ E+ + I IG Sbjct: 601 LMIHHNCRIPVLAAEEIDRDITIETIGEIG 630 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 216/688 (31%), Positives = 338/688 (49%), Gaps = 42/688 (6%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 + I +L +L +++ PLP LD++ N+ +S+++L ++++ L + F Sbjct: 13 AFGRHVDSIPIIAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTF 72 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 PT+LL TL RL LN+A+TR IL+ G+ AG ++ FG +VGG+ +G VVF+I+ Sbjct: 73 PTLLLVATLFRLGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIA 127 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 II F+V+ KGA R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + F Sbjct: 128 IIQFVVVAKGADRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQF 187 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGASKFV+GDAIAG+LI ++N+VGG+++G +G + A YT+LT+GDGLV+Q Sbjct: 188 YGAMDGASKFVKGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQ 247 Query: 255 IPALVISTAAGVIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311 IP+L+IS AAG+++TRV+ + VG + +Q+ S P + +A V LVPG P L Sbjct: 248 IPSLLISFAAGILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTL 307 Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL--GMEVGY 369 FL L LA I + + +A + +E L + + Sbjct: 308 AFLGLGVLLALLAALI----PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRV 363 Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429 RL P + Q L R+ ++ +E G P + + + L Y + + V I Sbjct: 364 RLAPELFDQLKPLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIAD 423 Query: 430 GDAYPGRWLAINP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 G + G + +LPG A + + +E ++ Sbjct: 424 GQLERTQGEGERKRGLSLPSLPGRAGAETG---------------------SQMEIEAML 462 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 + I G QEA L D +++ P+L +++ + L VL LL Sbjct: 463 VGRIGDAICAKPWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTG 521 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 V IR++R I E L + + +D L + R AL I+ QW + + + L LE Sbjct: 522 VGIRNLRAIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEA 581 Query: 609 LLLQALQGGGGLEPGLAD-----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663 +L Q L G ++ + Q + VL+ LR + LR Sbjct: 582 VLRQRLIASGQIKFIDLQVDEQHAFVQQVIADMQTTWRDHPGAVLVTGQDLRRSVEALLR 641 Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIGG 691 + VL+ E+SD R+ TI Sbjct: 642 GGERGVTVLAVEEISDEVTYRVLHTISV 669 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 179/688 (26%), Positives = 333/688 (48%), Gaps = 73/688 (10%) Query: 15 KSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71 K +L P ++ L+ +++++ LP ++D + S ++L++ + + L+ Sbjct: 4 KLRNSTLLFNPSSVMIAFLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKV 63 Query: 72 AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131 PT++L T RL L++A+TR I+ G+V+E G F++GGN G+++FV Sbjct: 64 TFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGRVIETIGEFVMGGNLISGLLIFV 118 Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191 I+ I+ F+V+TKG R+AEVGARF LD +PGKQM ID DL +GLI ++A+K R+++ E Sbjct: 119 IITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTE 178 Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251 +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q +S+ + + +++LTIGDGL Sbjct: 179 NKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGL 238 Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--P 309 V+QIP+L++S A GV +TR+ +D ++Q+ + S V+G++ ++ G+ P Sbjct: 239 VSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNP 298 Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369 L+++ +L + + ++ E + V E ++ + Sbjct: 299 TLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVEPEGSGVFE------------SLKFVF 346 Query: 370 RLIPMVDFQQDGELLGRIRSIR-KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428 R D Q + R++ + + + Q +G P V ++ ++D+ A Y + GV Sbjct: 347 R-----DAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGV--- 393 Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488 + + ++ G + D F L+ + S + Sbjct: 394 -------QTYQFSQNSSEGIVEIL--NDDVFNLHD-------------------DLSANL 425 Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548 +++ I E + Q + ++ +A ++ + + V L +H VL+ ++ Sbjct: 426 DEIISYFIQTRLVEKYNLQYSSNIVAELAS-QSEIMKSEIDSAVGLNRVHDVLKQMIRSP 484 Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608 D + E+L + ++SDP +R IT + ++HV+ L Sbjct: 485 EFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPE--- 541 Query: 609 LLLQALQGGGGLEPGLADRLLA---QTQEALSRQEMLGA-PPVLLVNHALRPLLSRFLRR 664 L + + G E +RL+ + + R M PVL+VN L+ F+++ Sbjct: 542 -LTEEISGYVAGEFEDFERLIEIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQ 600 Query: 665 SLPQLVVLSNLELSDNRHIRMTATIGGK 692 + L+V S+ ++ DN I + I + Sbjct: 601 VMSTLLVCSHTDIVDNNCISSSEVINVQ 628 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 178/700 (25%), Positives = 323/700 (46%), Gaps = 80/700 (11%) Query: 4 LAAMLRLPANLKSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 + A LRL ++LK + +L P +L L+ +++++ LP ++D + S ++L+ Sbjct: 1 MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59 Query: 61 VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120 + + L+ PT++L T RL L++A+TR I+ G+V+E G F++G Sbjct: 60 IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGQVIETVGQFVMG 114 Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180 GN G+++F+I+ I+ F+V+TKG R+AEVGARF LD +PGKQM ID DL +GLI ++ Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174 Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240 A+K R+++ E +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q +S+ + Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234 Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298 +++LT+GDGLV+QIP+L++S A GV +TR+ D + QL + S Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294 Query: 299 LGLLGLVPGMPNLVF--LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND 356 + ++ L PNL++ + GLA W+ ++ A Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHG---------- 344 Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKK--FAQEMGFLPPVVHIRDNMDLQ 414 + L + Q L+ R ++K + Q +G P V + + L+ Sbjct: 345 ----------LFESLKFVFRDSQYQSLVQRNVENKEKVLWGQALGS--PAVLV--DPTLE 390 Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474 ++ + +E+ S A + ++ Sbjct: 391 DD-LKVYVSDIEMYSYK----------------------------HAEAGSVVDIQNDEL 421 Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534 + V + +++ I E + Q + ++ +AQ ++ + + V L Sbjct: 422 FVASADVASNLNNI---ISYFIHHRFIEKYNLQYSNNIVAGLAQ-QSEIMKSEIDSAVGL 477 Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594 +H VL+ ++ D + E L + ++SDP +R IT + Sbjct: 478 NRVHDVLKQMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQE 537 Query: 595 DEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLL---AQTQEALSR-QEMLGAPPVLLV 650 +V+V+ L L + + G E DRL+ + + R G PV++V Sbjct: 538 GKVNVVLLTPE----LTEEISGFVAGEFDDVDRLIAVQTGLRNEIKRLLVQYGVKPVVVV 593 Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 N ++ F ++ + ++V S+ ++ ++ I + TI Sbjct: 594 NENELNVVKAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 144/664 (21%), Positives = 276/664 (41%), Gaps = 101/664 (15%) Query: 29 LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88 L IL ++ LPLP +LD + ALS++ + + FP L+ LLRL L Sbjct: 16 LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75 Query: 89 NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148 N+ASTR I+ G A ++ + G F G+ ++L +NF++++KG+ RI Sbjct: 76 NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130 Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208 AEV +RF L+ +P KQMA+D+DL +G KK+++ + +E DF+ +M+G +FV+GD Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190 Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268 AI +++++N+V V L + + G+A E +GD LV+Q+PAL+ S AA ++ Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245 Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328 +++ ++ + + + + ++ L +P P +L + L W+ Sbjct: 246 SKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLL-----WLA 300 Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388 R+++ +E ++ A + Q+ + R Sbjct: 301 YRKEEPASEDSCIERAFSYVEGACPKE-----------------------QESQFYQVYR 337 Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448 + ++ +++G PV+ + ++ G+ + ++ T Sbjct: 338 AASEEVFEDLGVRLPVLT------------SLRIEERPWLR---VFGQNVYLDEMTPEAV 382 Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508 LP + A E + Sbjct: 383 LPF--------------------------------------------LRNIAHEALNAEV 398 Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568 Q+ L+ + ED+VP ++L++L + + L+ E+V ++ ILE +A + Sbjct: 399 VQKYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEAVAVYQNSG 458 Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRL 628 L VR +LG I + + K + VI +D +E L+ + P + + + Sbjct: 459 DSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSYSKSN---PVMQENV 515 Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688 + + L R ++ + R + + L P L+VLS+ EL I Sbjct: 516 IRRVDSLLERSVFKDFR-AIVTSCETRFEMKKMLDPHFPDLLVLSHDELPKEIPISFLGI 574 Query: 689 IGGK 692 + + Sbjct: 575 VSDE 578 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 164/681 (24%), Positives = 297/681 (43%), Gaps = 110/681 (16%) Query: 13 NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72 N + + W+I+A P IL ++ LP +++D N+A S+ ++ + + Sbjct: 30 NFRGSSWKIVAIPSC---ILFTLIFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86 Query: 73 AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132 FP++LL+ LLRL LN+ASTR IL G A ++ A G+F G+ + + V ++ Sbjct: 87 IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141 Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192 L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG A ++S + +E+ Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201 Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252 D++ +M+G +FV+GDAI +++ +NI+ L +G H + L +GD LV Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDL-------WLTVLGDALV 254 Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312 +QIPAL+ S AA ++ +V + + + +++ + L A +L + +PG P + Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314 Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372 L F+ L L + + VE D + + + Sbjct: 315 ILGFSVLL-FLGY---------KNPSSGETLLFQKERVEFVLPDEGVGNPANL------- 357 Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGD 431 + R + QE+G + P + +R P R++ G E+ + Sbjct: 358 --------------YKDARNQIYQELGVVFPEAIVVRHVTGSSP---RLIFSGQEVALRE 400 Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491 A ++ + T+ Sbjct: 401 LSC--------------------------------------PAILESIRQLAPETI---- 418 Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551 + R L+D + E+++P ++ +L +L+ L+ E+V + Sbjct: 419 --------SERFVTR-----LVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSL 465 Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611 ILE + + + EL VR LG+ I + +D + VI +D+ +E+ + Sbjct: 466 HLFPKILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVR 525 Query: 612 QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671 + Q L+ L ++++AQ + L G ++ R L R + P L+V Sbjct: 526 DS-QEKVVLD--LNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYFPDLLV 580 Query: 672 LSNLELSDNRHIRMTATIGGK 692 L++ EL + I + + + Sbjct: 581 LAHSELPEEIPITLLGAVSDE 601 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 140/289 (48%), Positives = 216/289 (74%), Gaps = 6/289 (2%) Query: 15 KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74 T+ LA +L+++++++M+LPLP ++D L N+ALS ++L+++M+ + L+F+ F Sbjct: 13 AVTRHNDLAIVLLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVF 72 Query: 75 PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134 PT+LLFTTL R+ LN+ +TR+IL++ A AG+++ FG + +GGNF +G VVFVIL Sbjct: 73 PTMLLFTTLFRVGLNITTTRLILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILT 127 Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194 I+ F+VI KGA R+AEVGARF LD MPGKQM+IDAD+ AG+I +EA++RR+ V+QE+ Sbjct: 128 IVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQM 187 Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254 YG+MDGA KFV+GD+IAG+++ ++NIVGG ++G+ QHGM+ G A +Y +LTIGDGLV+Q Sbjct: 188 YGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQ 247 Query: 255 IPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302 IP+L++S +AG+++TR + +VG Q+ Q+F P +L++ L Sbjct: 248 IPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGAGLSL 296 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 151/384 (39%), Positives = 229/384 (59%), Gaps = 8/384 (2%) Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219 MPG+QM+IDADLN G I + EA++RR + +EA FYG+MDGASKFV+GDAIAGI+I++IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279 I+GGL++GV+QH + A ++Y+LLTIGDG+V Q+PAL+I+ G+IVTR ++D ++ + Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK 339 +++ Q+ S P +LL A L L PG+P L L+ A + +AW + + + Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180 Query: 340 -------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392 + A+ E + + + VG +V Q L+ RI + RK Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVS-QPGSVLMDRIATFRK 239 Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452 + AQ++G + P V +D L RY I + GV G G+A R LAI+P +PGE Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299 Query: 453 ATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQL 512 T DP +GL A+WIE + A + +T+V+A TV THL ++ + +A L R E +L Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359 Query: 513 LDRVAQEMPKLTEDLVPGVVTLTT 536 L+RV Q L E+L+P V++++ Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 352 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 12/394 (3%) Query: 307 GMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363 G+P F L + + + R+++A A K E + + + Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180 Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423 + +G +L + Q+ EL R+ +R+KFAQE GF+ P + + D++ L P YRI + Sbjct: 181 ELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIH 239 Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483 G + S + G L + ++PGE +PAFG+ A + + +GY V+ Sbjct: 240 GTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVD 299 Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543 +V+ THL+ ++ + A+L ++ + LLDR+ E KL ED+ P ++ + L VL+ Sbjct: 300 NLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKL 359 Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603 LL E++ IR++ ILE +AE AP+ P + VR+ + + I ++V+ L Sbjct: 360 LLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLG 418 Query: 604 TPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656 + + Q+L+ ++P L ++ + A+ + G VL+ + RP Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 478 Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 + + R L VLS++E++ ++ I Sbjct: 479 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 512 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 339 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 168/640 (26%), Positives = 285/640 (44%), Gaps = 105/640 (16%) Query: 54 LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113 +++VL+ + +R L+FAAFP +LL T RL LNV++TR+IL + A AG+V++A Sbjct: 37 CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91 Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173 F +V G+ +G V+F ++ I ++VI +GA R+AEV ARF LD +PG+Q+AID + Sbjct: 92 FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151 Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233 G IG DEA+ RR+E+ + ADF+G MDG + V+GDA+ G++I IN+VGG +G+ Q G Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GA 210 Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293 + + Y L +GDGL+AQ+PA++++ AA ++V+RV + P ++L Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353 A +L +L VPGMP L F GLL +A ++ A P Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKKLASPE------------ 317 Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413 L + V L P + +G L ++R++ + + P + + +L Sbjct: 318 --------PLRVGVPASLRPELREDLEGAL----PALRQRCSATLNLPFPPLVLELRPEL 365 Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473 + ++ + T+ A DP W+ + Sbjct: 366 PERSLALDLEDRSLAR-----------------ETIEASAADDPD-----AWLLAGF--- 400 Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533 H +++ A+ L + ++R + P + + + Sbjct: 401 --------------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAES 440 Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAE----HAPIQSDPHELTAVVRVALGRAITQQ 589 + LH + + + E+VP+ + +L LAE H P + + R AL ++ Sbjct: 441 IDLLH-IARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497 Query: 590 W------FPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSR 638 + LE LL+ + G L P R+LA+ Q Sbjct: 498 LHAGVCELGDPRWLRA---SPDLEDLLVARWEPGANRPRVHLSPKERQRVLARVQGE--- 551 Query: 639 QEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678 P ++L + RP L+ + P + V + EL+ Sbjct: 552 -----GPAIVLCSARARPALAALMTGLRPHVPVFALGELA 586 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 109/349 (31%), Positives = 172/349 (49%), Gaps = 2/349 (0%) Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396 K+ + W D L +EVG LI +V + + R+ ++R + A Sbjct: 97 AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIVAPESK-DFFDRMTAVRCQLAD 155 Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456 +G + P + +RDN L YRIL+ E+ PG+++A++ GTA TL G VD Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215 Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 P FG IWI + + +A+ GY V+E S ++ THL + +H+ E+ + ++L++ Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 + E+L ++L+T+H VL LL+E V I++ +LETL H D L A Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635 VRV LGR I Q++ VH IGL+ LE LL+ G G + +RL+ ++ Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395 Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684 + E P L+ + LR L R + LP++ VLS E+ N I Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEIY 444 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 125/316 (39%), Positives = 172/316 (54%), Gaps = 5/316 (1%) Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439 RI + R ++A E GF+ P V RD+ L P Y++ + G G YPGR LA Sbjct: 14 QAVFAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLA 73 Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499 I+P G LPG AT +PAFGL A+WI+ +++A+ G+T V+ T + TH+ LI H Sbjct: 74 IHPAGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTH 133 Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559 AA LFGR E LLD V P L +++VP V+ + + +VLQ LL E+VPIRD+ I++ Sbjct: 134 AARLFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQ 193 Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 TLA+ A + DP L VR LG AI Q+ +D + V+ LD LE + + L G G Sbjct: 194 TLADVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADG 253 Query: 620 -----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674 L+P LA+ L + G P LL +R L F RR P+LVVLS Sbjct: 254 HGTHVLDPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRRALKTFSRRVAPRLVVLSI 313 Query: 675 LELSDNRHIRMTATIG 690 E+ D +R AT+G Sbjct: 314 NEVPDAIPLRAFATVG 329 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 13/346 (3%) Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224 M+IDADL AG++ ED KKRR + E+ YG++DGA KF++GDAIAGI+I+ +N++GG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282 VG++QHGM + A YT L+IGD LVAQIPAL+IS + G IVTRV + + ++G +++ Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--WIRGREQKAPAEPKP 340 LF+N S ++++A + +G +PG P VF++ +A L+ + + R R + E Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180 Query: 341 VKMAENNTVVEA---TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397 K A++ EA + + L + P ++ ++K F E Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKPKLEQHNLA------SRLKKTFFIE 234 Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457 G P + I A I + + + PG + G L Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294 Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503 + W+ + A GY A ++ L++ + +E Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 10/298 (3%) Query: 400 FLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF 459 P +++R N L Y + + + + G G L + + G A + Sbjct: 1 MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLA-MMGVAVREGER 59 Query: 460 GLN---AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 L +W+ + G + + ++A HL+ ++S+HA+ G QEA+ LLDR+ Sbjct: 60 FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576 + P L ++ ++ + + ++ Q L+ E+V IRD+R+ILE L E + + D LT Sbjct: 120 EERAPDLVREVT-RLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTE 178 Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631 VR AL R I+ G++ + I LD +E + +A++ LEP + +R + Sbjct: 179 YVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVTERFMKA 238 Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689 +A PV++ + +R + R + L V+S EL+ ++ I Sbjct: 239 VADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVNRI 296 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 270 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 11/313 (3%) Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440 L I +R ++ + +G P V IR + L + + + P L Sbjct: 32 PHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLT 91 Query: 441 NPGTAAGTLPGEATVDPAFGLNA---IWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497 P ++ T + G W+++ QA+ G VE + T L + Sbjct: 92 RPCSSLV------TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFE 145 Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557 ++ AE G QE + L+D + +L ++L + + + ++LQ L++E + IRD+RTI Sbjct: 146 RYTAEFIGVQETRYLMDAMEGRYGELVKEL-QRQIPVGKVAEILQRLVEENISIRDLRTI 204 Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617 L AP + D LT VR+AL R + +++ K + V+ L +E L+ +++ Sbjct: 205 FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQT 264 Query: 618 -GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676 G L +R + VLL +R + + + R L L VLS E Sbjct: 265 SSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQE 324 Query: 677 LSDNRHIRMTATI 689 L D ++++ TI Sbjct: 325 LGDEMNLKVAGTI 337 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 5/293 (1%) Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL--GR 386 R P K + ++ + D + E LI +V + +L Sbjct: 1 KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLILLVPKSRREDLEKAQL 59 Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446 +R +F + G P V +RD L +L+ + + Y +N Sbjct: 60 AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119 Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506 + T+ W+ E+ + GY + A + L ++++ E FG Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179 Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566 QE + +LD++ + P L ++++ T+ + +VLQ LL E+V +R+M+ I+E LA AP Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAP 238 Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619 + D L +R A+ R I ++ G E+ + + +E ++ + ++ G Sbjct: 239 REKDVINLVEHIRGAMARYICHKFANG-GELRAVMVSAEVEDVIRKGIRQTSG 290 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 10/216 (4%) Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541 VE + L+ L++ H +L R+ L +++ PKL E+LVPGV++L+ L KVL Sbjct: 8 VEPDALAQLPLDELVACHECDLLLRKPV---LQVLSKASPKLAEELVPGVISLSGLLKVL 64 Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601 Q LL E+VP+RD+R+I E +A +A D L AVVRV L RAI Q + E+ VI Sbjct: 65 QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124 Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654 L+ LE++LL +LQ G LEP +A++L EA RQEM G P +LLV + Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184 Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690 R +LSRF R ++P L VL+ E+ DN+ + + AT+G Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 11/172 (6%) Query: 233 MSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVM 292 M A +TLLTIGDG+ Q+PAL+IS A G+IVTR ++D+++ ++ QL S P + Sbjct: 1 MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60 Query: 293 LLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA 352 L+ AAVL L L+PGMP ++ IR +A AEP ++A +T Sbjct: 61 LIVAAVLAALLLLPGMPKWPIVVIGTIAFVAWRRIRKAAAEAAAEPVDEEVAAESTASP- 119 Query: 353 TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV 404 L + +G L + ++ RI +R+ ++ G P Sbjct: 120 ---------PLEIRLGEALSG-AWAGEGALVMDRIAGLRRVHEEQFGLPFPP 161 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 4/129 (3%) Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293 A +Y++L+IGDGL QIP+L+IS +AG+IVTRV + Q++ ++ +Q+ P ++ Sbjct: 1 SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60 Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353 L+A VL LL L+PG P + F+A L I R +K+ V+ E +++V Sbjct: 61 LTAVVLMLLALIPGFPFITLAFFSALLAL--PIILIRRKKSVVSANGVEAPEKDSMVPGA 118 Query: 354 WNDVQLEDS 362 + Sbjct: 119 CPLILRLSP 127 >UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQE5_CLOPH Length = 266 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 90/238 (37%), Gaps = 49/238 (20%) Query: 338 PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQ 396 P + ++N+ E + + + + ++VG + ++ Q G +++ +R A+ Sbjct: 68 PTSLTESDNDKDKERLFRAIL-SEPITLKVGCGFVDYLMKENQQG--FPKLQQVRINMAK 124 Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456 E G+L P V I D++ L ++I + + + + + Sbjct: 125 ESGYLLPTVRILDDITLDNHCFQI-----------LFYDKVVYEQNNLNPSSSEYPEIFE 173 Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516 LN + H +L RQ + L+D + Sbjct: 174 ----------------------------------QLNLTCTAHYEKLLHRQIVKDLIDNL 199 Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574 ++ P L + +P ++ + VL++L++ K IR++ I+E L ++ + D + Sbjct: 200 SKLYPVLVDGYIPDKLSYAQIQFVLKSLIEHKKSIRNLCEIIEYLEDNLVLGKDLVSI 257 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 67/108 (62%), Positives = 87/108 (80%) Query: 4 LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63 + L L A + ++L P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVAM Sbjct: 1 MFEALNLRALMAPANLRMLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVAM 60 Query: 64 FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111 +T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG AAGKV+ Sbjct: 61 YTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108 Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 4/98 (4%) Query: 598 HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653 V+ LD LER+L QA+ GGG +EP LAD LL E RQE +G PPVLLV Sbjct: 106 KVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAEVAQRQEDIGLPPVLLVPPQ 165 Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691 LR LLSRFLRR++P L V++N E+ + R IR+TA +GG Sbjct: 166 LRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 87.9 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 4/100 (4%) Query: 597 VHVIGLDTPLERLLL----QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652 ++V+ ++ LE+++ A Q G++P LA+ L QT +A RQE LG PVLLV Sbjct: 6 LNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLVPD 65 Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692 ALR ++R L+R+ P L VLS+ E+ +NR IR+ +G K Sbjct: 66 ALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 81.8 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 437 WLAINPGTAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495 LA++ G A G L G+ DP FGL+AIWI+ + A GY VV+A TV+ATHLNH+ Sbjct: 7 MLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHV 66 Query: 496 ISQHAAELFGRQEAQQLLDRVAQ 518 ++ +A EL G E Q LLD + Sbjct: 67 LTVNATELLGPDEVQALLDGLKA 89 >UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C0AUZ1_9ENTR Length = 111 Score = 72.9 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 66/78 (84%), Positives = 74/78 (94%) Query: 1 MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60 M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL Sbjct: 1 MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60 Query: 61 VAMFTQRTLEFAAFPTIL 78 VAMFT+RTL+FAAFPTI Sbjct: 61 VAMFTKRTLDFAAFPTIF 78 >UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI000185465C Length = 72 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328 T + ++D +++ QL + +++ A+L L +PG+P L +AW I Sbjct: 3 TTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLIS 62 Query: 329 GREQK 333 + Sbjct: 63 REGKD 67 >UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190A6ED Length = 85 Score = 56.0 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%) Query: 286 FSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345 +NP V++++A + +G +PG P VF++ + L L ++ +++ A+PK K + Sbjct: 1 MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ 60 Query: 346 NNTVVEATWNDVQLEDSL 363 ++ E + + L L Sbjct: 61 PLSIEEKEGSSLGLIGDL 78 >UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX Length = 63 Score = 51.3 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%) Query: 644 APPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688 VLLV LR L LR + VLS E+S+ +++ Sbjct: 3 EQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGR 47 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.160 0.464 Lambda K H 0.267 0.0490 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,845,222,568 Number of Sequences: 3077464 Number of extensions: 268578991 Number of successful extensions: 848015 Number of sequences better than 1.0e-01: 142 Number of HSP's better than 0.1 without gapping: 355 Number of HSP's successfully gapped in prelim test: 44 Number of HSP's that attempted gapping in prelim test: 845369 Number of HSP's gapped (non-prelim): 1087 length of query: 692 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 556 effective length of database: 621,861,252 effective search space: 345754856112 effective search space used: 345754856112 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 97 (41.7 bits)