BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (692 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce...   886   0.0  
UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente...   801   0.0  
UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam...   669   0.0  
UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac...   605   e-171
UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta...   603   e-171
UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi...   564   e-159
UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-...   559   e-157
UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del...   552   e-155
UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni...   551   e-155
UniRef50_Q057S2 Type III protein export, membrane component n=1 ...   548   e-154
UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2...   548   e-154
UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod...   546   e-153
UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   536   e-150
UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther...   536   e-150
UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap...   530   e-149
UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n...   523   e-146
UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac...   520   e-146
UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac...   519   e-145
UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui...   518   e-145
UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali...   517   e-145
UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact...   517   e-145
UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic...   514   e-144
UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep...   508   e-142
UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact...   508   e-142
UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm...   506   e-141
UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm...   504   e-141
UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   503   e-141
UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot...   502   e-140
UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt...   501   e-140
UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps...   500   e-140
UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri...   499   e-139
UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr...   495   e-138
UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo...   493   e-137
UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae...   491   e-137
UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   491   e-137
UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo...   490   e-137
UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact...   490   e-137
UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet...   489   e-136
UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact...   486   e-135
UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam...   485   e-135
UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp...   485   e-135
UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan...   483   e-134
UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid...   482   e-134
UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The...   479   e-133
UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=...   472   e-131
UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact...   470   e-131
UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp...   469   e-130
UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto...   469   e-130
UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   468   e-130
UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir...   461   e-128
UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco...   457   e-127
UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n...   451   e-125
UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib...   447   e-124
UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel...   442   e-122
UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n...   431   e-119
UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor...   429   e-118
UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea...   413   e-113
UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den...   401   e-110
UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep...   387   e-106
UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac...   385   e-105
UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys...   384   e-105
UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho...   379   e-103
UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr...   373   e-101
UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp...   372   e-101
UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot...   369   e-100
UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco...   368   e-100
UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax...   366   1e-99
UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr...   366   2e-99
UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA...   363   2e-98
UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=...   362   3e-98
UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T...   351   6e-95
UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8...   350   7e-95
UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu...   349   2e-94
UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein...   347   9e-94
UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus...   345   4e-93
UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s...   343   2e-92
UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O...   337   1e-90
UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero...   335   3e-90
UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax...   333   2e-89
UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G...   330   1e-88
UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI...   327   1e-87
UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6   324   6e-87
UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz...   321   6e-86
UniRef50_P35656 Hypersensitivity response secretion protein hrcV...   319   3e-85
UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho...   316   2e-84
UniRef50_B9JJ70 Type III secretory system inner memberane protei...   308   7e-82
UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ...   307   9e-82
UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax...   299   2e-79
UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh...   293   1e-77
UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf...   288   7e-76
UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob...   288   7e-76
UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2...   285   3e-75
UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta...   284   8e-75
UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax...   283   1e-74
UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho...   251   5e-65
UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell...   237   1e-60
UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH               233   2e-59
UniRef50_D0I6B6 Type III secretion inner membrane channel protei...   214   9e-54
UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho...   212   3e-53
UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples...   188   5e-46
UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell...   169   3e-40
UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax...   160   2e-37
UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil...   153   2e-35
UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID...   148   7e-34
UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo...   140   1e-31
UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n...   139   5e-31
UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom...   115   7e-24
UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri...   108   8e-22
UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf...    85   1e-14
UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi...    79   6e-13
UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs...    75   1e-11
UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4...    74   1e-11
UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n...    74   3e-11
UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4...    67   2e-09
UniRef50_UPI000190D087 possible secretory protein (associated wi...    65   1e-08

>UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms
           RepID=FLHA_BUCAI
          Length = 696

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/696 (63%), Positives = 557/696 (80%), Gaps = 8/696 (1%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M N +++LR+  +LK+TQWQILAGPILIL+ILSMMVLPL  F+LD+ FTFNIALSI++LL
Sbjct: 1   MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG  +AG+V+E+FGHFLVG
Sbjct: 61  VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++
Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M +  A E
Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG
Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-----NNTVVEATWN 355
           +LGLVPGMPN++FL+FT  L  L+WW+   E+K   E   +K  +     ++ + EA+WN
Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWL--YEKKYDLENDFIKSNKKYKFIHDAISEASWN 358

Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
           DV+LED + +E+GY+L PM D  + G+LL RIR +RKK AQE+GFLPP+V I++NM L  
Sbjct: 359 DVELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSG 418

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
             YRI +KGVE+G G  + GR++AI+ G    +LP E   +P FGL+  WI+   K +AQ
Sbjct: 419 NSYRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQ 478

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
            +GY+V+E+S V++THLN LI+ H  +LFGRQEAQQLL+RV  + PKLTEDL+P  + LT
Sbjct: 479 KKGYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLT 538

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
             HK+L+NLL E VPIRDMRTILETL+EHA  Q DP+ELT++VR+AL + I Q+ F   +
Sbjct: 539 IFHKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNN 598

Query: 596 EVHVIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
            + +IGL+  LERLLL +L+ G   +EP L++ LL QT+EA+ +Q ++G+P VLLV H+L
Sbjct: 599 IIEIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSL 658

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R  LS+FLR++ P+L VLS  E+ D + I+MT  IG
Sbjct: 659 RYFLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIG 694


>UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae
           RepID=FLHA_BUCBP
          Length = 702

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/700 (58%), Positives = 525/700 (75%), Gaps = 9/700 (1%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M+N+ ++ +     +  ++Q L+GP+LIL+ILSMMVLPL  FILDL FTFNIALSI+VLL
Sbjct: 1   MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG
Sbjct: 61  MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE +
Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+   AA+
Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS  VLG
Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357
           +LGLVPGMPN++FL+FT  L  ++W I             +K  +N     + +A+WNDV
Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360

Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           QLE S+ +E+G  LIPM+    +   LL +IR++RKK A+ +GFLPP+VHIRDN +L   
Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474
            Y IL+KG+EI  G    G++LAIN G A+G   LP E T DP F   + WI S L  QA
Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           + +GY + E STV++THLNH+I  H + LFGRQEAQQLLD V++  PKL EDL+P  + L
Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAITQQWFPG 593
           T  H+VLQNLL E VPIRDM+TILETL  HAP  Q+D   LT++VR++LG+ I Q  F  
Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIFQN 600

Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
            +++ VI  D+ LE++LL+ +      LEPGL + ++ + Q+  +  ++   P VLLV+H
Sbjct: 601 -NKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            LR  +++ L +++P++ VLSNLEL D   I  T  IG +
Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699


>UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria
           RepID=Q21IQ2_SACD2
          Length = 755

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/695 (51%), Positives = 478/695 (68%), Gaps = 44/695 (6%)

Query: 40  PAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILME 99
           PAF+LD  F+FNIALSI+VLLVA+++ R L+FA FPTILL  TLLRLALNVASTR++L+E
Sbjct: 51  PAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAVFPTILLIATLLRLALNVASTRVVLLE 110

Query: 100 GHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDG 159
           GH G  AAGKV++AFG  ++GGN+A+G+VVF+IL+IINF+V+TKGAGRI+EV ARF LD 
Sbjct: 111 GHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIILIIINFVVVTKGAGRISEVSARFTLDA 170

Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219
           MPGKQMAIDADLNAG+I +DEA+ RR +V  EADFYG+MDGASKFVRGD++AGILI++IN
Sbjct: 171 MPGKQMAIDADLNAGIIDQDEARTRREDVASEADFYGAMDGASKFVRGDSVAGILILIIN 230

Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279
           I GGLLVG++QH +    A E Y LLTIGDGLVAQIP+L++S AA ++VTRV++ +D+  
Sbjct: 231 ICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVAQIPSLLLSVAAAIMVTRVNSSEDMNR 290

Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA----- 334
           Q+++Q+F +P  + ++  ++ ++G +PGMP+  F+        LA++I  R Q+A     
Sbjct: 291 QVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPFITLAIICGILAYYIHFRSQEAEVVEV 350

Query: 335 ------------------PAEPK-PVKMAENNTV------------VEATWNDVQLEDSL 363
                             P+ P   +   EN +              E +W+DV   D +
Sbjct: 351 GNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSARQGNPPPQSSEPTEVSWDDVTPVDLV 410

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
           G+EVGYRLIP+VD  Q GELLGRI+ +RKK +Q++GFL P VHIRDN+DL P+ YRI + 
Sbjct: 411 GLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQDLGFLIPAVHIRDNLDLLPSGYRITLM 470

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           GV IG G+ +P ++LAINPG   G+L G  T DPAFGL AIWI+ A +EQAQ  GYTVV+
Sbjct: 471 GVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDPAFGLEAIWIDEAQREQAQTLGYTVVD 530

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
            STVVATHLN +I  H  EL G +E Q+ LD + ++ PKL E+LVP  +++  L K LQ 
Sbjct: 531 PSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLGEKSPKLVEELVPETLSINQLLKTLQG 590

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LL E+VPIRDMRTI E LA H     D   LT++ RV+L R I Q        + VI LD
Sbjct: 591 LLREQVPIRDMRTIAEALAAHGNKSMDTTALTSIARVSLARQIVQNIVGQDPNLPVITLD 650

Query: 604 TPLERLLLQALQ--------GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
             LE+LLLQ++Q         G  +EP LA+RL     E   +QEM G P VLLV   +R
Sbjct: 651 PSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLNKSLVETAKKQEMAGRPIVLLVAAPIR 710

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           P++++F+R  + ++ V++  E+ DN+ I + ATIG
Sbjct: 711 PMMAQFVRYHISEMHVIAYNEVPDNKQITIEATIG 745


>UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria
           RepID=A0LC38_MAGSM
          Length = 708

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/669 (47%), Positives = 457/669 (68%), Gaps = 7/669 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           +++++++M++PLP+ +LD   + NIA++I++LL  ++  + L+F++FP++LL  T+ RLA
Sbjct: 37  VIVVMAVMIIPLPSELLDFFLSINIAIAIVILLTTIYIHKPLDFSSFPSVLLLATMFRLA 96

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LN+A+TR+IL+ G  G +AAG+V+ AFG F+VGGN+ +G+++F ILVIINF+VITKGAGR
Sbjct: 97  LNIATTRLILLHGGEGESAAGEVIRAFGQFVVGGNYVVGVIIFSILVIINFIVITKGAGR 156

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD MPGKQMAIDADLN+GLI EDEA++RRSE+ QE++F+G+MDGASKFVRG
Sbjct: 157 IAEVAARFTLDKMPGKQMAIDADLNSGLITEDEARRRRSEIEQESEFFGAMDGASKFVRG 216

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAGILI +INIV G ++GV Q  +S   +A+ YT+LT+GDGLVAQIP LVIS  AG +
Sbjct: 217 DAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGDGLVAQIPTLVISAGAGFL 276

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           VTR S D ++ + +  Q+ + P V+L+SA VLGLL ++PGMP + F L    +   +W++
Sbjct: 277 VTRASGDANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMPTVAFGLLAIAMGSWSWYL 336

Query: 328 --RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385
             R  ++    + K +  AE     E         D L ++VGY LI +VD  Q G+LL 
Sbjct: 337 FRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRLDVGYGLISLVDETQHGDLLD 396

Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445
           +IRSIR++FAQ+MGF+ P +HI+DN+ L+P  Y  L+KGVE+G G+  PG +LA+  G  
Sbjct: 397 KIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGVEVGQGELRPGSYLAMEGGDV 456

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
            G + G ATV+PAFGL A WI S  +E+A++ GYTVV+ASTV+ATH+  ++  HA E+  
Sbjct: 457 TGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDASTVLATHITEMVHNHAHEMLT 516

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
           RQE Q LLD V++  PKL E+L+P +V+L  + KVLQ LL E+V IRDM TILETLA++ 
Sbjct: 517 RQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQKVLQGLLRERVSIRDMGTILETLADYG 576

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GL 620
            I   P +L  +VR +L R+I +++   +  +  + L    E L+ +A+  G       L
Sbjct: 577 KIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPDAENLVAEAIVSGDYGSYLSL 636

Query: 621 EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
            P  A +LL + +  + +   +   PVL+    +RP + + L   LP LVVLS  E+  N
Sbjct: 637 SPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRVRPFVKQALEGVLPHLVVLSQNEIPAN 696

Query: 681 RHIRMTATI 689
             +    +I
Sbjct: 697 VSVSSLGSI 705


>UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria
           RepID=Q3SJM4_THIDA
          Length = 692

 Score =  603 bits (1554), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 329/637 (51%), Positives = 449/637 (70%), Gaps = 3/637 (0%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++  +R L+F+ FPT+LL T
Sbjct: 16  VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TLLRL+LNVASTRIILM+GHTG  AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI
Sbjct: 76  TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA
Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A   Y LLT+GDGLV QIPAL+IS
Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           TAAG++V+R S++QD+  +   Q+F  P  + ++AAVL  LG++PG P++ FL   A L 
Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTV-VEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
            LA W+    + A  +  P+   E   + V+ TW+D+   D L +EVGYRLIP+VD  Q 
Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
           G  L RI   R++FA +MG + P++ +RDN+DL+P  +RI +KGV++  G+   G+ LA+
Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
           + G   G + G   VDP   L  +WI++A  E+A+++G+ V+E + ++A  +  +  QHA
Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
            EL GR E QQLLD +A+  P L ED+ P  + LTT+  +LQ L+ E VPIRD RT+ ET
Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618
           LA  AP   D  +L   VR ALGR+I  + F G D + VIGL    E  LL  +  +G  
Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
            L P   D L    ++A++  E  G PPVLL +  LR
Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLR 652


>UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales
           RepID=A5V5S8_SPHWW
          Length = 715

 Score =  564 bits (1454), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 315/697 (45%), Positives = 449/697 (64%), Gaps = 53/697 (7%)

Query: 25  PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84
           P+  L+++ +MV+P+P+F+LD+ F  NI +S+ VL+VA+   + L+F++FPT+LLF TLL
Sbjct: 22  PLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFATLL 81

Query: 85  RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144
           RL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VITKG
Sbjct: 82  RLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVITKG 141

Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204
           AGR++EV ARF LD MPGKQMAIDADLNAGL+  +EAK RR EV  EADFYGSMDGASKF
Sbjct: 142 AGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGASKF 201

Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264
           V+GDA+AG+LI+VINI GGL++G L HG+S+  AA +Y +L IGD LVAQ+PAL++S AA
Sbjct: 202 VKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSIAA 261

Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
             IVTRVS+  D+  Q+ +Q F +       AA+LGLLG+VPGMP+++ +L  A + G  
Sbjct: 262 AAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMI-ILSAAAVAGFV 319

Query: 325 WWIRGREQK----------------APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
            W   + +K                AP  P  +            WN++    +LG+E+G
Sbjct: 320 AWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSID-----------WNEISDGSALGLELG 368

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y L+ +VD ++   L+ RI  IR++ ++EMGF+ P+V +RDN+ L P  YRI + GV +G
Sbjct: 369 YGLVGLVDERKGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMG 428

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
             + +P + LA++ G   G + G    DP+FGL A+WI    +  A + GYTVV+ +TVV
Sbjct: 429 EDECFPEQLLALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVV 488

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATHLN +I+  AA+LFG  EAQ+LLD + +  P+L   L P  ++L  +    + LL E 
Sbjct: 489 ATHLNQVIAATAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEG 548

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           VP++D R I E + + A   +D   L   +R  +G  I Q   P K  + V+ LD  LE 
Sbjct: 549 VPLKDFRRIAEAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLES 608

Query: 609 LLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR------PL- 657
           LL QA++   G     EP LA+R++A   EA        A P  LVN A R      P+ 
Sbjct: 609 LLAQAVRTSPGASHPFEPALANRIVAAISEA--------AMP--LVNSATRFAIVTSPIA 658

Query: 658 ---LSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
              L+R L+  LP+  V+S LE+ D + + + A +GG
Sbjct: 659 RRALARLLKPHLPETPVMSFLEIPDGKAVEVAAVVGG 695


>UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72
           Tax=Proteobacteria RepID=Q5DY37_ECOLX
          Length = 697

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 301/676 (44%), Positives = 437/676 (64%), Gaps = 18/676 (2%)

Query: 25  PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84
           P++IL IL+M++LPLP  +LD+LFTFNI L++MVLLVA+  +R LEF+ FPTILL TTL+
Sbjct: 20  PLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAKRPLEFSLFPTILLITTLM 79

Query: 85  RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144
           RL LNVASTR++L+ GH GA AAGKV+E+FG  ++GGNF +G VVF+IL+IINF+V+TKG
Sbjct: 80  RLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVGFVVFIILMIINFIVVTKG 139

Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204
           A RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V  EADFYG+MDGASKF
Sbjct: 140 AERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKF 199

Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264
           VRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+TIGDGLVAQIP+L++STAA
Sbjct: 200 VRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAA 259

Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
            +IVTRVS + D+   + +QL ++PSV+  +  ++ +L +VPGMP+L FLLF+A L    
Sbjct: 260 AIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTG 319

Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEA-----TWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           W +  R Q A AE K ++     T+ E      +W  + L + + + +GY+L+ +VD  Q
Sbjct: 320 WRMSKRPQAAEAEEKSLETL-TRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQ 378

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
              L  RIR +R+  +   G L P + IR+N  L+P++Y I + G++    D    + +A
Sbjct: 379 GNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMA 438

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +      G + G    DPA+G+   WI+ A K +A   GY V+++++V+ATH+N ++  +
Sbjct: 439 LPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSY 498

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
             +LF   +  QL +R++   P+L EDL    +  + L KV + LL E V +RD+ TI  
Sbjct: 499 IPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIAT 557

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQ 615
            L   + +  D   L A VR+AL R+IT   F  K E+ V  L+  LE LL     QA Q
Sbjct: 558 VLVASSTLTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNELENLLTNVVNQAQQ 616

Query: 616 GGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
            G  +      +P + ++  +   +   + +  G  PVLLV   LRPLL+R+ R   P L
Sbjct: 617 AGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPPQLRPLLARYARLFAPGL 676

Query: 670 VVLSNLELSDNRHIRM 685
            VLS  E+ D   +++
Sbjct: 677 HVLSYNEVPDELELKI 692


>UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria
           RepID=A1V9R4_DESVV
          Length = 703

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 311/671 (46%), Positives = 440/671 (65%), Gaps = 13/671 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++ IL +M++PLP F LD+L   +I+LS+++L+ +MF    LEF+ FP++LL TTLLRLA
Sbjct: 28  VVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIFPSLLLVTTLLRLA 87

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNVASTR+IL+ G  G  AAG+V+ AFG F+VGG++ IG V+F+IL I+N  VIT G  R
Sbjct: 88  LNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILFILNKNVITAGTTR 147

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR  + +EADFYG+MDGA KFV G
Sbjct: 148 IAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADFYGAMDGAGKFVSG 207

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           D  AG+ I +INI+GGLLVG++Q  M    A  +YTLLT+GDGLV+ IP++++STAAG+I
Sbjct: 208 DVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVSTIPSIIVSTAAGII 267

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           V+R +++  +GE+ + QL  N   M L + VL L  LVPG+P + FL+F+A L   A  +
Sbjct: 268 VSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFLIFSASLFFFAKLL 327

Query: 328 RGRE-QKAPAEPKPVKMAENNTVVEA--TWNDVQL---EDSLGMEVGYRLIPMVDFQQDG 381
             R+  +A  + K           ++  T  +VQ     D+L +EVGY LIP+VD +Q+G
Sbjct: 328 GDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVGYGLIPLVDEEQNG 387

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ S +      LA++
Sbjct: 388 NLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVASAEILIDHLLAMD 447

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
           PGTA   + G  T +PAF L A+WI  + KE+A + GYTVV+ STV+ATHL  +  +H +
Sbjct: 448 PGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVIATHLTEVFRRHLS 507

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           E  GRQE Q LLD +++  PK  E+LVPGV++L  + KVLQNL+ E V +RD+ +++ETL
Sbjct: 508 EFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVRENVSVRDLLSVVETL 567

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL---QGGG 618
           A++ P   +P  LT  VR  L R+I +     +  + +I LD  +ER L  ++   +GG 
Sbjct: 568 ADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVERTLQDSIRQTEGGA 627

Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
              L P  A RL+      +         PV+L     RP L++ L R LP + VLS  E
Sbjct: 628 YLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLMRFLPNIPVLSQAE 687

Query: 677 LSDNRHIRMTA 687
           +  +  IR+ A
Sbjct: 688 IPPD--IRLQA 696


>UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNG5_9BACT
          Length = 696

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 299/671 (44%), Positives = 455/671 (67%), Gaps = 16/671 (2%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I  + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ +   L F+ FP++LL  TL R
Sbjct: 21  IFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSVLLIVTLFR 80

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+LNVA+TR IL+ G  G  AAG+V+ +FG F+VGGN+ +GI++F+ILV+INFMVITKG+
Sbjct: 81  LSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLINFMVITKGS 140

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
           GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+MDGASKFV
Sbjct: 141 GRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGAMDGASKFV 200

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           RGDAIAGI+I  INI+GGLL+GV QH M  G +A  +T+LTIGDGLV+QIP+L+IST+AG
Sbjct: 201 RGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPSLIISTSAG 260

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +IV+R     D+  Q+  QLFS+  V+ ++ A+L    LVPG+P + F+   A +  L +
Sbjct: 261 LIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIAALMFYLVY 320

Query: 326 ---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382
                +   +K   E    +    +   E    ++   D + +E+G+ LIP+VD  Q G 
Sbjct: 321 ISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPLVDTNQGGT 380

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
           LL RI++IR++ A EMGF+ P V IRDN+ L    Y +++K V + +G  +P ++L +NP
Sbjct: 381 LLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFPEKYLIMNP 440

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
                 + G  T +PAFGL A W++  +K+ A+++GYT+V+ STV+ATHL  +I ++A E
Sbjct: 441 EGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTEIIKKNAHE 500

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
           L GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR+++T++E LA
Sbjct: 501 LLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNLQTVMEVLA 560

Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG--- 619
                  +P  L   VR+ L R IT+        ++V  L + +E++L  +LQ       
Sbjct: 561 TFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSLQNTDDGQE 620

Query: 620 --LEPGLADRLLA----QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
             ++P LA ++L+    +T+E +S+    G PP+++++  +R  + RF+ + +P + ++S
Sbjct: 621 IVIDPTLAQKILSGIMKKTEECVSK----GLPPLMIISPPIRLPMRRFVEKFVPNVNIMS 676

Query: 674 NLELSDNRHIR 684
           + E+S++  I 
Sbjct: 677 HNEISESVRIE 687


>UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC
          Length = 699

 Score =  548 bits (1412), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/653 (44%), Positives = 442/653 (67%), Gaps = 4/653 (0%)

Query: 40  PAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILME 99
           P F+LDL FTFNI  SI++L+V++F  + L+F++FPTILLF+TL RL+LN++STRIIL+ 
Sbjct: 46  PTFVLDLFFTFNIIFSIIILIVSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLN 105

Query: 100 GHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDG 159
           GHTG+ +AG V+E+FG FL+ GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD 
Sbjct: 106 GHTGSCSAGHVIESFGFFLIRGNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDA 165

Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219
           MPGKQMAIDADLN+GLI E +AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N
Sbjct: 166 MPGKQMAIDADLNSGLISEKQAKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVN 225

Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVG 278
           ++GGLL+G++Q+ MS+  A + Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++G
Sbjct: 226 VIGGLLIGIVQYKMSLLKAIKIYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIG 285

Query: 279 EQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP 338
           E+++ Q+F+N  V+  S+ +    GL+PGMPN +FL F+     L+W+I  R+       
Sbjct: 286 EKIIYQVFNNSKVIFFSSIIFCFFGLIPGMPNFIFLFFSVLFFILSWYINYRKN-INKNF 344

Query: 339 KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEM 398
             +   +    ++ +WND++ ED L +E+      +   ++   L+ +++ +RK  AQ+ 
Sbjct: 345 SKILKFKKRKKIDISWNDIEFEDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDY 404

Query: 399 GFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPA 458
           GFL P ++I  N  L   +Y+I +KGVE+ SG  +  + L IN       + G    D  
Sbjct: 405 GFLLPEINIIHNSKLDRGQYKIFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSF 464

Query: 459 FGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQ 518
           F     WI   +K+    +    ++++ ++  + N +I  +   LFG QE QQLLDR++Q
Sbjct: 465 FSFPVFWINPVIKDTLLNKKIVFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQ 524

Query: 519 EMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAV 577
             PKL + L+P ++++ T   +LQNLL + + I+D+RTI+ETL +++   +++  ELT +
Sbjct: 525 HYPKLIDYLIPNLMSIITFQNILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNI 584

Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGGLEPGLADRLLAQTQEAL 636
           +R+AL   ITQ++F     ++VIGL T  E +LL+ +      +EP  +++L+ +T+ A+
Sbjct: 585 IRIALKEFITQKFFFKNKYINVIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAI 644

Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             Q+    P VLLVN  +R LLS F       L VLS  E+S+NR I++T  I
Sbjct: 645 ILQKKNNLPVVLLVNPKIRVLLSNFFLNCNIILPVLSFSEISENRVIKITQFI 697


>UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum
           RepID=B6AMB1_9BACT
          Length = 702

 Score =  548 bits (1411), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 314/673 (46%), Positives = 442/673 (65%), Gaps = 25/673 (3%)

Query: 26  ILILL----ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           ILIL+    IL +M++P+P  +LDL    NI  S+++LLVAM T+  LEF  FP+ILL +
Sbjct: 23  ILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFPSILLLS 82

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RL+LNVASTR+IL+ G  G  AAG V+++FG F+VGG++A+G+V+F I V+INF+V+
Sbjct: 83  TLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVVINFVVV 142

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FYG+MDGA
Sbjct: 143 TRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMDGA 202

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDA+A ILI+ +NI+GGL++G++  G+ +  A  +YTLLTIG+GLVAQ+PAL++S
Sbjct: 203 SKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALIVS 262

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            AAG++VTR  +  D+G ++  Q+ + P  +  ++ +L LL ++PG+P+  F L  A + 
Sbjct: 263 VAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLL-ASVT 321

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN-DVQLE-DSLGMEVGYRLIPMVDFQQ 379
           GL  + R   +K  A       AE  TV     N +  L  D L + VGY L+ +V+ + 
Sbjct: 322 GLMAYRRTTLEKKKARE---LQAEEKTVPPPAENVETYLSLDLLELNVGYGLVDLVEGKA 378

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
              L  RIR IR++ AQEMG + P +HIRDN+ L+P  Y +L+KG  +   +  P   LA
Sbjct: 379 GSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSLLA 438

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +NPG    T+ G    +P FGL A WI    +E+ + QG+TVV+  TV++THL  +I  H
Sbjct: 439 MNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIRSH 498

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           AAEL GRQE Q+LLD + ++ P+L EDLVPG V+L  L  VL  LL E+V IRD+RTILE
Sbjct: 499 AAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTILE 558

Query: 560 TLAEHAPIQSDPHELTAV---VRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL-QAL 614
            +++      D  ++T +   VR ALGR+I   +  GK   + V+  D   E + + QA 
Sbjct: 559 AVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQAS 618

Query: 615 QGGGG----LEPGLADRLLA---QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
           Q   G    LEPGLA +LL+   Q  E+L R+   G  PVLLV+   R  + RFL R   
Sbjct: 619 QTPPGSPLVLEPGLAQKLLSGLGQVMESLGRK---GVQPVLLVSAQTRVPVRRFLERYFS 675

Query: 668 QLVVLSNLELSDN 680
            L VLS +E+  +
Sbjct: 676 SLPVLSPMEVPKD 688


>UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA3_RHOM4
          Length = 696

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 319/661 (48%), Positives = 433/661 (65%), Gaps = 12/661 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           I+LIL +M++PLP F+LD+L   NI +S+ +LL A +  R LEFA FP +LL TTL RL+
Sbjct: 31  IVLILFVMLVPLPPFLLDVLLATNITISLAILLTAFYAARPLEFAIFPGLLLLTTLFRLS 90

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNVASTR+IL EG  GA     ++ AFG F+V GN+ +G ++F++LV+INF+VITKG+GR
Sbjct: 91  LNVASTRLILSEGKAGA-----LISAFGQFVVAGNYVVGAIIFIVLVVINFVVITKGSGR 145

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD +PGKQMAIDADLNAGLI EDEA+KRR E+ +EADFYG+MDGASKFVRG
Sbjct: 146 IAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIAREADFYGAMDGASKFVRG 205

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAG++I  +NI+GG L+GV QHGMS   AA+++ LL+IGDGLV+QIPAL+ISTAAG+I
Sbjct: 206 DAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGDGLVSQIPALLISTAAGII 265

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           V+R S + ++ E+   QLF     +L++ + L LLGLVPG+P + F L     L L +  
Sbjct: 266 VSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLPLVPFWLLAGTTLLLGYQR 325

Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387
           R  E++  A+P   +  E          ++ + D L +E+GY LIP+VD  Q G+LL RI
Sbjct: 326 RQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLELEIGYGLIPLVDPNQHGDLLDRI 385

Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447
           + +R++ A E+G + P V IRDNM L   RY I ++G  +  G+  PG +LA+ P     
Sbjct: 386 KVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGNPVAEGEVLPGYYLALLPEGLEE 445

Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507
           T PG  T DP FGL A+W+       A+  G TVVEA  V+ THL  ++ ++A  L  RQ
Sbjct: 446 TPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAPAVITTHLLEVLRKNAHLLLDRQ 505

Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567
           E ++LLD+V +  P L E+L P ++++  + KVL+ LL E++PIRD+ +ILE LA+HA  
Sbjct: 506 EVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLLRERIPIRDLVSILEALADHATS 565

Query: 568 QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG------GLE 621
             +   LT  VR AL   IT+Q+      ++   LD  LER LLQ  + G       GLE
Sbjct: 566 TKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPILERHLLQQAEAGELHPGTLGLE 625

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS-NLELSDN 680
           P  ++R L + +    R    G PPVLL +  LRP+L  FL  S+P L VLS N  L D 
Sbjct: 626 PRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPVLYNFLAPSIPDLNVLSYNDLLPDT 685

Query: 681 R 681
           R
Sbjct: 686 R 686


>UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG1_9GAMM
          Length = 703

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 310/681 (45%), Positives = 454/681 (66%), Gaps = 19/681 (2%)

Query: 1   MSNLAAMLRLPANLKSTQW---QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57
           M +     +  A++  ++W   Q L GPI++++IL+M+V+PLP  +LD+LFTFNI  S++
Sbjct: 1   MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60

Query: 58  VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117
           +L  A +T++ L+F+AFPT+LL  TLLRLALNVA+ R+IL++G+ G  AAG V+E+FG F
Sbjct: 61  ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120

Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177
           +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I 
Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180

Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237
           +++AKKRR  ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+  
Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240

Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296
           AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G  +  QLF  N   +L++A
Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP-KPVKMAENNTVVEATWN 355
            +LG+ G++PGMP+  FLL+ A L G  W++  R +   AE       AE   VVE   +
Sbjct: 301 IILGITGIIPGMPHWAFLLY-ALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPID 359

Query: 356 DVQLE--DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
              L+  + +G+ +GY+LIP++  Q+DGEL  R+  +R++ ++  GF+ P +H+ D++ L
Sbjct: 360 ARVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTL 417

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
           +P  YRI + G+    G+ +  + LAI  G+    + G  T DP +G  A WI     + 
Sbjct: 418 RPGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADD 477

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
           A++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+   KL + ++P +VT
Sbjct: 478 AELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVT 537

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593
              L KVL++L+ E+V +RD+  ILE+LAE         +L  ++R  LGR I      G
Sbjct: 538 APKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLG 597

Query: 594 KDE-------VHVIGLDTPLE--RLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGA 644
           +D        V    +D+ L+       A      LEP +   L    ++A+++ E    
Sbjct: 598 RDRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSM 657

Query: 645 PPVLLVNHALRPLLSRFLRRS 665
            PV+LV  A+R  LS +LR +
Sbjct: 658 RPVILVRDAIRYALSGWLRSA 678


>UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIY8_THEYD
          Length = 683

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 316/669 (47%), Positives = 464/669 (69%), Gaps = 12/669 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           I+LIL  M++P+P F+LDL  T +I LSI+++LVA + ++ L+F+ FP++LL  TL+RL+
Sbjct: 17  IILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVLLIATLMRLS 76

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LN+ASTR+IL  G  G  AAGKV++AFG F+V GNF +G++VF+ILVIINF+VITKGAGR
Sbjct: 77  LNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINFIVITKGAGR 136

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+MDGASKF+RG
Sbjct: 137 IAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAMDGASKFIRG 196

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL+ STAAG++
Sbjct: 197 DAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPALITSTAAGIV 256

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           V+R +T+ ++G+ ++ QLF NP  +  ++ VL LLGL+PG+P+L F++       +A+ +
Sbjct: 257 VSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAVVSGAIAYLM 316

Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387
             +E+K      P  + E    +EA    +   D + +E+GY LIP+V  + +  L+ RI
Sbjct: 317 ISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLV--EGESSLVERI 374

Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI--NPGTA 445
           RS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + +   GR+LAI   PG  
Sbjct: 375 RSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFLAIGARPGQD 434

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
              +P   T DPAFG++A+WIE     +AQ+ G+TVV+AS+V+ THL  ++  +  EL G
Sbjct: 435 IDGIP---TKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKNYGYELLG 491

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
           +QE Q+LLD +A+  P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TILETL+E+A
Sbjct: 492 KQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTILETLSEYA 551

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG-----GGGL 620
            +  DP  LT  VR AL R IT+        +  I  +  LER  +++LQ          
Sbjct: 552 NVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTPQGINFAT 611

Query: 621 EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
           +P L ++ +   ++      + G  PVL+ + ++R  + R + R  P L VLS  E++  
Sbjct: 612 DPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLSPQEIAPG 671

Query: 681 RHIRMTATI 689
             I M  T+
Sbjct: 672 VKILMFGTV 680


>UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria
           RepID=A1T0L5_PSYIN
          Length = 695

 Score =  530 bits (1366), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/684 (42%), Positives = 434/684 (63%), Gaps = 29/684 (4%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P  +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+  T+R L+F+ FPT+LL  
Sbjct: 14  LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRVLDFSVFPTLLLIA 73

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL+RL LNVASTRI+L+EGH G  AAG V++AFG  ++GGN+ +G+VVF+IL+IINF+VI
Sbjct: 74  TLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMVVFIILMIINFVVI 133

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG  RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR E   EA+FYGSMDGA
Sbjct: 134 TKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQETGDEAEFYGSMDGA 193

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDAIAG+LI+ IN++GG+L+G+  H MS   + +++ LLTIGDG+VAQIP+L+++
Sbjct: 194 SKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIGDGIVAQIPSLLLA 253

Query: 262 TAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
           T+A VIVTRVS +D D+ + +  Q+ S PSV+  SA V+ ++GLVP MP+L FL+F A L
Sbjct: 254 TSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNMPHLPFLIF-AAL 312

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEA---------TWNDVQLEDSLGMEVGYRL 371
           LG   W + + Q+        ++ E N  V            W  V   + + + +G++L
Sbjct: 313 LGFVGWQQSKIQEES------QLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITLTLGFKL 366

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           + +++ +    LL  I+  RK  ++E+GFL P V IRDN+ L+P  Y I + G E+  G 
Sbjct: 367 VSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDGEEMERGT 426

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
              G  +A++   + G++ G    DPA+ + A+WI    K  A   GY V+  + V+ATH
Sbjct: 427 VKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLADVIATH 486

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           +N ++S + A +F   + + + D++    P+L+E L   V     L ++++NLL ++VP+
Sbjct: 487 INKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQL-QIIKNLLIDQVPV 545

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           ++ + I  T+ +      DP  +++ VR AL R I     P    + +  L + L+ +L 
Sbjct: 546 KNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSELDNILR 605

Query: 612 QALQGGGGLEPGLA-------DRLLAQTQEALSR--QEML--GAPPVLLVNHALRPLLSR 660
            A+       P  +         LLAQ Q+ L    Q+M+  G  P+LLV+  +RP++S+
Sbjct: 606 NAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTVRPMMSK 665

Query: 661 FLRRSLPQLVVLSNLELSDNRHIR 684
           F R     L+VLS  E++D+  I 
Sbjct: 666 FSRAFSRDLIVLSFNEIADDYQIN 689


>UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT
          Length = 694

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 302/674 (44%), Positives = 452/674 (67%), Gaps = 17/674 (2%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I +L +L +M++PLP +++D++   NI + +++LL A++  + LEF+ FP++LL TTL R
Sbjct: 22  ISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVFPSLLLLTTLFR 81

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+LNVA+TR+IL+ G  G AAAG V+E FG F+VGGN  +G+++F+ILV+INF+VI+KG+
Sbjct: 82  LSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILVLINFVVISKGS 141

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR  V +EA+FYG+MDGASKFV
Sbjct: 142 TRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEFYGAMDGASKFV 201

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           RGDA+AG++I VIN+VGGL++GV+QHGMS+  A   ++LLT+GDGLV+QIPALVISTAAG
Sbjct: 202 RGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQIPALVISTAAG 261

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +I+TR S+++ +  ++  Q  ++P V  ++A  L L+ LVPG+P + FL+ + GL    +
Sbjct: 262 IIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFLILSLGLGASGY 321

Query: 326 WIR-GREQKAPAEPKPVKMAENNTVV-----EATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           +++ G++QK         +AE+ T +     E   +D+ +ED + +E+GY LI MV+  +
Sbjct: 322 YLQLGQQQKGLE-----TIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLIDMVEGGR 376

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
           +G LL R++ +R++  QE+GF+ P VHI+DN+ L  + Y+IL++G  +G G+  P   LA
Sbjct: 377 EGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIRPRNLLA 436

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +    +   + G AT +PAFGL A+WI    ++QA++ GYTVVE +TV+ THL  L+   
Sbjct: 437 LESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLTELLRGQ 496

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           AAE+  R +   LL++ AQ  PK+ E++VP  V +  L  VLQ LL E VPIRD+  ILE
Sbjct: 497 AAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRDLMLILE 556

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGG 617
            L++HA       +L   VR  LGR ITQ++   + E+ V  LD  LE+ + + +  Q G
Sbjct: 557 ALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSERMSQQQG 616

Query: 618 GGLEPGLAD--RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675
             L   + +  R +++  E  S  ++    PVLL    LR  L+R LR+ + ++ VLS  
Sbjct: 617 WALPLDMPEWQRFISRVNEISSHFDV--DIPVLLTTPQLRGHLTRALRKVMTRIAVLSIA 674

Query: 676 ELSDNRHIRMTATI 689
           E+    +I+  A +
Sbjct: 675 EIPPQTNIQSLAKV 688


>UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria
           RepID=D1B6A5_THEAS
          Length = 697

 Score =  520 bits (1340), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 301/682 (44%), Positives = 442/682 (64%), Gaps = 34/682 (4%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           +L++LI+ MM++PLP ++LD+L   NI   +++LL   + ++ LE AAFPTILL  TL R
Sbjct: 21  VLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAFPTILLMATLFR 80

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           LALNV++TR++L+ G+     AG+++ AFG+F+VGGN+ +G VVF+ILVII F+VITKGA
Sbjct: 81  LALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILVIIQFLVITKGA 135

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADFYG+MDGASKFV
Sbjct: 136 ERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADFYGAMDGASKFV 195

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAG++I  INI+GGL +GVLQ GM +  A  +Y+LLT+GDGLVAQIPAL++STA G
Sbjct: 196 KGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQIPALLLSTATG 255

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +IVTR + + D+G  MV  +  N   + + + +L  L +VPG+P + F L  + +  +A+
Sbjct: 256 IIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFALLGSAMAAMAY 315

Query: 326 WIR----------GREQKAPAEPKPVKMAENNTVVEATWNDVQLE----DSLGMEVGYRL 371
            I+          GR + +P +PK    A +      +  +  L     D + +E+GY L
Sbjct: 316 GIQREAAEAEVPAGRGEGSP-QPKGAPGAPSAPPSAPSGPENVLPLLTVDPMEVEIGYAL 374

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           IP+VD  Q G++L RI +IR++ A ++G + P + IRDN+ L+P  Y I +KG E+G G+
Sbjct: 375 IPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIRVKGAEVGRGE 434

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
             P  +LA++ G     L G  T +PAFGL A+WI   +++QA+  GYTVV+  +V+ATH
Sbjct: 435 LLPDHYLAMSTG-GEDLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTVVDCPSVLATH 493

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L+ +I ++ A+L  RQE Q+L+D VA+  P +T+DL+  V++L  + KVLQ L+ E+V I
Sbjct: 494 LSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVLQGLIREQVSI 552

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT---PLER 608
           RD+ T+ ETLA+H      P  L   VR AL R IT +    +D+  V+G+ T     E+
Sbjct: 553 RDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKL---QDQDGVLGVYTLSPRWEQ 609

Query: 609 LLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
            + + ++G         + P     L+     A     M G  PVLL +  +R ++ R +
Sbjct: 610 RIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVRLVVRRIV 669

Query: 663 RRSLPQLVVLSNLELSDNRHIR 684
             SLPQL V+S  E++ +  +R
Sbjct: 670 EGSLPQLFVVSYNEIAPSTQLR 691


>UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria
           RepID=A0LT74_ACIC1
          Length = 708

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/671 (43%), Positives = 435/671 (64%), Gaps = 16/671 (2%)

Query: 25  PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84
           P  ++ I+ MMV+PLP  +LD+L   NI  +++VLLV+MF +R L+FAAFP++LL  TL 
Sbjct: 40  PAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRPLDFAAFPSLLLIATLF 99

Query: 85  RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144
           RLALN++ TR++L+ G+     AGKVV++FGHF+VGG+  +G+V+F+I++II F+VIT G
Sbjct: 100 RLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLVIFLIILIIQFVVITNG 154

Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204
           AGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+  EADFYG+MDGASKF
Sbjct: 155 AGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEADFYGAMDGASKF 214

Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264
           V+GDAIA ++I  +N++GGL +G+LQ  +S+G A  +Y+LL++GDGLV+QIPAL++S + 
Sbjct: 215 VKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVSQIPALLLSVST 274

Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
           G+IVTR +++ D+G  ++ Q+ S    + +  A + ++ L+PG+P L FL+     L L 
Sbjct: 275 GLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPFLILGGAALALG 334

Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384
             ++   + A  +P     A      EA   ++++E  L + + + L+ +VD  + GELL
Sbjct: 335 MRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEMRVE-PLELNLAFDLVDLVDQSRGGELL 393

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
            R+R++R+K A E+G + P+V  RDN+DL P  Y I + GVE+  G+A PG  LAI  G 
Sbjct: 394 ERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEAPPGAMLAI--GE 451

Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504
               LPG AT++P FGL   W+   L++QA++ G TVV+ ++V+ THL  ++  +AA+L 
Sbjct: 452 NLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHLAEVVRDNAAKLL 511

Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564
            R++ + L +   +  P + E+L P ++ L  + +VLQ LLDE VPIRD+  I E L++ 
Sbjct: 512 SREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIRDLPRIFEALSQR 571

Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERLLLQALQGGG----- 618
           A +  DP  L    R  LG AI+  +   +D  + V+ +D   E+ L+  L+ G      
Sbjct: 572 ARVSQDPEGLIEAARATLGPAISAAY--AQDGRLSVLTIDPLTEQRLVDKLRHGEHGSFL 629

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
            L+P  A+ L+ + +    R E LG  PVL     LRP L R +R + P+L VL+  EL 
Sbjct: 630 ALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVRSANPRLPVLAYGELG 689

Query: 679 DNRHIRMTATI 689
            +  +    T+
Sbjct: 690 PHLQLETVGTV 700


>UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae
           RepID=FLHA_AQUAE
          Length = 678

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/675 (43%), Positives = 452/675 (66%), Gaps = 10/675 (1%)

Query: 19  WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78
           W ILA    ++LILS +++P+PA +LDLL T +I  S+ VLL+  F +  LEF++FP++L
Sbjct: 7   WIILA----VVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVL 62

Query: 79  LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138
           L  TLLRL+LN+A+ R IL+ GH G  AAGKV+EAFG  + GG+  +G++VF+I ++INF
Sbjct: 63  LLGTLLRLSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVINF 122

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           +VITKGA RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY +M
Sbjct: 123 IVITKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAM 182

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGASKF+RGDAIA ++I+ +++VGGLL+G+   GM +  A ++YT+L+IG+GL +Q+PAL
Sbjct: 183 DGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPAL 242

Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318
           ++STAAGV+ T++S+ +++GE +  +L   P  +L SA VLG +GL+PG+P L FL  +A
Sbjct: 243 LLSTAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSA 302

Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQLEDSLGMEVGYRLIPMVD 376
            L G A+++  +  K     +  K+A+  T  +    +  +   + + +E+GY LIP+VD
Sbjct: 303 ILAG-AYYLVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVD 361

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436
             Q G++  +I+++RK+ A+E G + P++HIRDN+ L+P  YRIL+KG+EI   +  PG 
Sbjct: 362 ESQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGH 421

Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
           +LA+N G A G + G  T DPAF + A WI    KE+AQ  GY VV+A TV+ THL+ +I
Sbjct: 422 YLAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVI 481

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
            ++  EL  R E  +L++ ++++ PK+ +++VP  V ++ +H+VLQNLL E +P+ D+ T
Sbjct: 482 KRNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLT 541

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616
           ILETLA++     DP  LT  VR AL + IT+ +      ++ I L   +E  L++ L+ 
Sbjct: 542 ILETLADYIEQTKDPDLLTEYVRQALSKRITRMYLTN-GTLYAIALSPKVEAKLVKFLKE 600

Query: 617 GGGLE--PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
               E    + + LL + +  + +    GA PVLL +  +R  + + +   L +L VLS 
Sbjct: 601 NREDEFIDYVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSY 660

Query: 675 LELSDNRHIRMTATI 689
            EL    +I++   +
Sbjct: 661 NELEKQVNIKIIGIV 675


>UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE9_SALRD
          Length = 693

 Score =  517 bits (1332), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 303/665 (45%), Positives = 433/665 (65%), Gaps = 18/665 (2%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           I+ IL MMV+PLP+++LDL    +IALS+ VLL + + +R LEFA FP +LL TTL RL+
Sbjct: 5   IVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTLFRLS 64

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNVASTR+IL     G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITKG  R
Sbjct: 65  LNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITKGTER 119

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           I+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+KFVRG
Sbjct: 120 ISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATKFVRG 179

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           +A+AGILI  IN+VGGL++GV Q  M +G AA ++ LL+IGDGLV+QIPAL++STAAG+I
Sbjct: 180 EAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTAAGII 239

Query: 268 VTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW 326
           V+R S ++  +  +M  QL   P  +L++   LG++G VPG+P + F L +AG+L L W+
Sbjct: 240 VSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVL-LLWY 298

Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATW-----NDVQLEDSLGMEVGYRLIPMVDFQQDG 381
           +R +E+KA  E +  +  E              +D+ L D L +E+GY LI +VD  Q G
Sbjct: 299 LRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPDQGG 358

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
           +LL R++ +RK+ A+EMG + P V IRDN+D+   +Y I ++G  IG G   PG  LA+ 
Sbjct: 359 DLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKLALL 418

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
           P        G    DP FGL A+W+      +A+  G TV+E   V++THL   + ++A 
Sbjct: 419 PDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRKNAY 478

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
            L  RQE +++LD+V +  P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TILETL
Sbjct: 479 RLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTILETL 538

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618
           A+HA        LT   R AL   IT+++   +  +    +D  LE+ LL+  + GG   
Sbjct: 539 ADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGGLDA 598

Query: 619 ---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675
              GL+P  AD L+    E  +        P+LL++  LR  + +FL   +  + VLS  
Sbjct: 599 NTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVLSYN 658

Query: 676 ELSDN 680
           +L+ +
Sbjct: 659 DLTPD 663


>UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria
           RepID=A6Q2M0_NITSB
          Length = 695

 Score =  517 bits (1331), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/659 (44%), Positives = 441/659 (66%), Gaps = 12/659 (1%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           M+LP+P F LDLL T +I  S+++L+  ++    LE A+FP++LL  TL RLALN+A+TR
Sbjct: 31  MILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIASFPSLLLLATLFRLALNIATTR 90

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
            IL+ GH G  AAGK++E+FG F+VGGN+ +GI++FVILV INF+V+TKG  RI+EVGAR
Sbjct: 91  RILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVILVTINFIVVTKGTERISEVGAR 150

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD MPGKQMAIDADLNAGLI E EA++RR  + +EADFYG+MDGASKF+RGDAIAGI+
Sbjct: 151 FTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEADFYGAMDGASKFIRGDAIAGII 210

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274
           I  INI+GG+ +GVLQHGM +  AA ++TLLT+GDGLV+QIP+L+ STAAG++VTR  ++
Sbjct: 211 ITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLVSQIPSLITSTAAGLMVTRAVSE 270

Query: 275 QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA 334
            ++G+++ +QL S P  + ++A  L ++G VPGMP + F +  AG++ L  ++   E K 
Sbjct: 271 TNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIPFTIL-AGMIALTAYMMQLEMKR 329

Query: 335 PAEPKPVKMAE---NNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIR 391
               K  +  +      V E+    +   +++  E+GY LIP+VD ++ GELL RI+S+R
Sbjct: 330 ETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYGLIPLVDEEKGGELLKRIKSLR 389

Query: 392 KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG 451
           K+ ++E+G + P++HI+DN++L+   YRIL+KGVE+      PG+ LAI+ G   G L G
Sbjct: 390 KQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARYQIEPGKMLAIDTGQTNGKLEG 449

Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511
             T +P FGL A WI+ + K++A++ G+TVV+  TV+ THL+ +I Q+A E+ GR E ++
Sbjct: 450 VETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIITHLSEIIKQNAHEILGRSETKE 509

Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571
           L+D++ Q+ P + +++VP  V    LH+VLQNLL E +PI+D+ TI+E+L+++     D 
Sbjct: 510 LVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIPIKDLLTIIESLSDNITKTEDT 568

Query: 572 HELTAVVRVALGRAITQQWFPGKDEV-HVIGLDTPLERLLLQALQGGGG----LEPGLAD 626
             LT +VR +L R IT  +   KD V + + LD   E  L   ++   G    ++P    
Sbjct: 569 DILTELVRESLARLITSIY--AKDGVLYALTLDPASEEKLYAKIKEYNGNLPPIDPAKLQ 626

Query: 627 RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685
             + Q  + + +  +    PVLL +  +R  + + +   +  + VLS  E+     +++
Sbjct: 627 SFIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYMSNVAVLSYNEVDPKTKLKI 685


>UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWG6_ALIAD
          Length = 682

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 292/673 (43%), Positives = 435/673 (64%), Gaps = 17/673 (2%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           LK T   ++   + +L  + M+V+P+P  +LD+L  FN+ +S+ +LLVAM T   LEF+ 
Sbjct: 5   LKRTDLMVM---LFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSI 61

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FP++LL TTL RL+LN+++TR+IL +G+ GA     V++ FG+F++G N  +G +VF+I+
Sbjct: 62  FPSLLLVTTLYRLSLNISTTRLILSQGNAGA-----VIQTFGNFVIGNNPVVGFIVFLII 116

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           +I+ ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEAD
Sbjct: 117 IIVQYVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEAD 176

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           FYG+MDGASKFV+GDAIA ++I+ IN+V GL++GV     S   A  +YT+L++GDGLV+
Sbjct: 177 FYGAMDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVS 236

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           QIPAL++STA G++V+R +TDQ++G  +V Q+F     + + +  + LLGL+  +  L  
Sbjct: 237 QIPALLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPV 296

Query: 314 LLFTAG---LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370
           +    G   +   A   R  +QK   E K  +        E  +  + +E  +  E GY 
Sbjct: 297 IPIAGGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVE-PVEFEFGYG 355

Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430
           LIP+VD +Q G+ + R+  IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+  G
Sbjct: 356 LIPLVDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARG 415

Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
           +   G WLA++PG     + G  T DP FGL A+W+   +K +A+  GYTVV+  +V+AT
Sbjct: 416 EILMGHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMAT 475

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
           HL  ++ +HA EL GRQ+ ++LL+ + Q  P + ED+ PG ++L  + +VL NLL+E VP
Sbjct: 476 HLTEVLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVP 535

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610
           IRD+ TILE LA+      D  +LT  VR  L R I  Q+  G+D + V+  D  LER +
Sbjct: 536 IRDLVTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREM 595

Query: 611 LQAL--QGGG---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665
            QA+  QGG    GLEP  A  +  + +E  +  +  G  PVLLV+  +R  LSR +RR 
Sbjct: 596 QQAVVEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRY 655

Query: 666 LPQLVVLSNLELS 678
           +P L VLS  EL 
Sbjct: 656 VPDLPVLSFAELD 668


>UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC
          Length = 691

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 291/682 (42%), Positives = 437/682 (64%), Gaps = 20/682 (2%)

Query: 13  NLKSTQWQILA-GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           NLK     I+A G + I+L   MM++PLP FILD+L   NI+LS+++LL+ +FT   L+ 
Sbjct: 5   NLKENMDVIVAFGVVGIVL---MMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDL 61

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
           + FPT+LL TTL RL LN++STR+IL +G+     AG+V+EAFG F+VGGN+ +GI++F+
Sbjct: 62  SIFPTVLLVTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFL 116

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           I++I+ F+VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I +  A+KRR E+ QE
Sbjct: 117 IILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQE 176

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
           ADFYGSMDGA+KFV+GDAIAG+++  INI+GG+++G +   M++  AA++Y  LTIGDGL
Sbjct: 177 ADFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGL 236

Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           V+QIPAL+IST+AG+IVTR STD++ G  +  QL + P  ++++  VL +LG++PG+P  
Sbjct: 237 VSQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKP 296

Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAE----PKPVKMAENNTVVEATWNDVQLEDSLGMEV 367
            F     G +   +++ GRE+K   E     KP  +  +   VE   N + +E S+ +E+
Sbjct: 297 AFFSLGIGAIAAGYFL-GREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLINVE-SIEVEI 354

Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427
           GY LI + D    G+LL RI SIR++ A +MG +   + IRDN+ L P +Y I +KG  +
Sbjct: 355 GYGLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVV 414

Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487
           G  +  P   L ++P     ++ G  T++P FG+ A+WIES   E A+I+GYTVV++ST+
Sbjct: 415 GGYEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTI 474

Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
           + THL  +I  +A EL GRQE + ++D   +    + ++L+P ++TL  + KVL+NLL E
Sbjct: 475 LITHLLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLRE 534

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
           KV I+D  TILETLA+ +    D   LT  VR+AL R+I          + V  L    E
Sbjct: 535 KVNIKDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETE 594

Query: 608 RLLLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
            L+   LQ         ++P   +++    QE ++        PV++V+  +R    + +
Sbjct: 595 ELVSNNLQRSVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLV 654

Query: 663 RRSLPQLVVLSNLELSDNRHIR 684
               P L VLS  E+ ++  I+
Sbjct: 655 EIVYPNLTVLSLNEIPNDIKIK 676


>UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria
           RepID=A3PKA8_RHOS1
          Length = 704

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 313/690 (45%), Positives = 432/690 (62%), Gaps = 38/690 (5%)

Query: 25  PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84
           P+ IL +++MMVLPLP  +LDL F  NI LS+++L+VA+ T R L+F++FP+ILL  T+L
Sbjct: 20  PLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFPSILLVATVL 79

Query: 85  RLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKG 144
           RLALNVASTRI+L  GHTG  AAGKV+EAFG F++GGNF +G  VF ILVIIN +VITKG
Sbjct: 80  RLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVIINLVVITKG 139

Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204
           AGR++EV ARF LD MPGKQMAIDADLNAGL+  DEA++RR++V  EADFYG+MDGASKF
Sbjct: 140 AGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFYGAMDGASKF 199

Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264
           V+GDA+AGILI++INIVGG+++G LQHG+ +  AAE+Y LL+IGDGLVAQIP+L++S A 
Sbjct: 200 VKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQIPSLLLSIAT 259

Query: 265 GVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
            +IVTRVS+  D    +G+QM       P      AAV+ +LGL PGMPNL+FLL     
Sbjct: 260 AIIVTRVSSTTDMSVLIGKQMGIGRAWVP-----VAAVMLILGLTPGMPNLLFLLGGVAA 314

Query: 321 LGLAWWIRGREQ----------------KAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364
             +AW    RE                 +A A P P  +         T  DV     + 
Sbjct: 315 AAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAI---------TTEDVTDYAPIS 365

Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
           +++GY LIP+      G L+ RI +IR+  ++ +GF+ P V IRD++ L P +YRI +  
Sbjct: 366 LQIGYGLIPLAG-DNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQ 424

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
             +     YP R LA+  G +   L G A  DP+FGL A WI      +A+   + VVE 
Sbjct: 425 AILAEDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEP 484

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
            +V+ATHL+ ++ +HAA+L G+ + Q L+D + +  P L + +VP +V L  L  VL+ L
Sbjct: 485 ESVIATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKAL 544

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           L +++P+ DMR ILE L++ A     P E+   +R AL   + QQ  P    + +I L+ 
Sbjct: 545 LADRIPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEP 604

Query: 605 PLERLLLQALQGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661
            LE+LLL++ + G  +   + GLA  LL    E L      G    ++V   LR   + F
Sbjct: 605 DLEQLLLRSRRQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAF 664

Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           +R  LP  VV+   EL + R + +  T+GG
Sbjct: 665 VRPHLPDAVVIGMGELPEARRVEVLGTVGG 694


>UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A546_GEMAT
          Length = 695

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 301/682 (44%), Positives = 430/682 (63%), Gaps = 15/682 (2%)

Query: 5   AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64
           +A L +PAN    +   +A  ++++L ++++V+PLP  +LDL    +I LS++VLLV++ 
Sbjct: 3   SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62

Query: 65  TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124
           T   L+F++FP +LL  TL R+ L+V+STR+IL E H     AGKV+EAFG F++GGN+A
Sbjct: 63  TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117

Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184
           +GIV+F+IL  INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R
Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177

Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244
           R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+
Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237

Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           LT+GDGLV Q+PAL+ISTAAG++VT  + +  +G  +  QL ++P  M ++A VLG   L
Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKA---PAEPKPVKMAENNTVVEATWNDVQLED 361
           +PG+P   FL   AG   LA      E +         PV+M E     +   + +Q+ D
Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQI-D 356

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            + +EVGY LIP++D  Q G+LL RI  +RK+ A E+G L P + IRD++ L    Y I 
Sbjct: 357 PIELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIK 416

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           ++G E+   +  P   +A+N G+    + G  TVDP+FG+ A W+ SA + +A+  GY V
Sbjct: 417 LRGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVV 476

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           VE +TVVATHL   +   A+EL GRQE Q++++ + +  P L E+++PG V+L+ LH+VL
Sbjct: 477 VEPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVL 536

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q LL E+VPIRD+ TILE L + A    DP  LT V R AL   I + +      V  I 
Sbjct: 537 QRLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGIT 596

Query: 602 LDTPLERLLL------QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
           +   LE  L+       +      L P     +L       +   + G P  L+   +LR
Sbjct: 597 IGGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLR 656

Query: 656 PLLSRFLRRSLPQLVVLSNLEL 677
             + R +   LP L V+S  EL
Sbjct: 657 VGVRRLIEPVLPSLPVISLAEL 678


>UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes
           RepID=Q5WFS0_BACSK
          Length = 678

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/668 (42%), Positives = 432/668 (64%), Gaps = 24/668 (3%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP F+LD+L  FNI+LS+++LLVA+ T+  L+F+ FPT+LL  TL RL L+V++TR IL
Sbjct: 22  PLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTMLLLVTLFRLGLSVSTTRSIL 81

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
                G A AG V++ FG F++GGN  +G +VF+IL++I F+VITKGA R++EVGARF L
Sbjct: 82  -----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQFIVITKGAERVSEVGARFTL 136

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQM+IDADLNAGLI + EAK+RR ++  EADFYGSMDGASKFV+GDAIA I+I++
Sbjct: 137 DAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGSMDGASKFVKGDAIASIIIVI 196

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277
           IN++GGL++G++Q GM M  AA +YTLLT+GDGLV QIPAL+ISTA GVIVT+ +++ ++
Sbjct: 197 INMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPALLISTATGVIVTKAASEGNL 256

Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA- 336
              +  Q+ + P ++ ++AA + LLGL   +  +V     AGLL  A +   +   A A 
Sbjct: 257 STDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSI-AGLLAFAGYRLSKASLAKAN 315

Query: 337 -------EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRS 389
                  E  P + +   +VV+     +Q+ D +  E GY LIP+ D  Q G+LL R+  
Sbjct: 316 FEEALLEEAPPEEPSGPESVVQL----LQM-DPIEFEFGYGLIPLADANQGGDLLDRVVM 370

Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449
           IRK+ A E+G + PV+ IRDN+ L+P  Y I +KG  +  G+     ++A++ G    ++
Sbjct: 371 IRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLDHYMAMSTGEQDDSI 430

Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509
            G  T++PAFGL A+W++  ++++A++ GYTVV+  TV++THL  ++  HA EL GR+E 
Sbjct: 431 VGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEVLKAHAYELLGREET 490

Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569
           +QL+D + +  P L E++ P  +T   + KVL+NLL E++ IR++  I E LA++ P+  
Sbjct: 491 KQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLPVIFEALADYGPLTK 550

Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGG----LEPGL 624
           D + +T  VR AL R IT Q   G +E+ VI L   +E+ +  A+ Q   G    L P  
Sbjct: 551 DMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIGQNENGSFLALAPAD 610

Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
           +  +L  T + + +   LG   V+L + A+R  + + + R LP + V+S  EL  +  ++
Sbjct: 611 SQAILQNTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVPVVSYNELEPDVEVQ 670

Query: 685 MTATIGGK 692
               +  +
Sbjct: 671 SVGVVNAE 678


>UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=B8FTQ1_DESHD
          Length = 688

 Score =  503 bits (1296), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/648 (43%), Positives = 415/648 (64%), Gaps = 16/648 (2%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           P+P  +LD+L T +I+ +++ L++++FT+  L+F+  P+++L  TL RL+LNV +TR+IL
Sbjct: 31  PIPPLMLDILLTISISAAVLTLMISVFTKDPLDFSVLPSLILILTLFRLSLNVTTTRLIL 90

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
            EGH     AG+V++ FG F+V G+  +G ++F ILV++NF+VITKG+ R++EVGARF L
Sbjct: 91  GEGH-----AGEVIQQFGEFVVKGSAVVGFIIFAILVVVNFIVITKGSERVSEVGARFTL 145

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQM+IDADLNAG+I E +A+ RR ++  EADFYG+MDGASKFV+GDAIA I+I+ 
Sbjct: 146 DAMPGKQMSIDADLNAGMITETQARDRRQKIQAEADFYGAMDGASKFVKGDAIAAIIILF 205

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277
           INI+GG + GV+  GM +  A  +YTLLTIGDGLV QIPAL++STA G++VTR +++ ++
Sbjct: 206 INIIGGFVTGVVMRGMDIMEALHTYTLLTIGDGLVTQIPALLMSTATGLVVTRAASETNL 265

Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337
           GE +  QLF  P  + ++A V  +L +  G+P L  L+    L+ L   +    QKA  E
Sbjct: 266 GEDLSRQLFHTPKALYITAGVAMVLAMF-GLPLLPLLIVAIVLVALGRVMDKGSQKAVVE 324

Query: 338 PKPVKMA---ENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394
                     E +   E   N + + D++ +E+GY LI +VD QQ G+LL RI  IR++ 
Sbjct: 325 ESAAARETALEESKKPENVLNLLNV-DNMELELGYALIALVDVQQGGDLLDRIVLIRRQV 383

Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454
           A E+GF+ PV+ +RDNM+LQP +Y I ++G E+  G+     +LA++ G     +PG  T
Sbjct: 384 ASELGFIVPVIRVRDNMNLQPNQYSIKIRGAEVAGGEILADHYLAMSSGLGDDNIPGIPT 443

Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514
            +PAFGL+A WI +  +E+ ++ G TVV+A TV+ATHL  +I  +A E+  RQ+ + LLD
Sbjct: 444 KEPAFGLDAKWINAVYREEVEMNGGTVVDAPTVLATHLTEVIKSNAWEILSRQDVKTLLD 503

Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574
              ++ P   +D +   + L  L KVL NLL E+V IRDM TILETLA++A    D   L
Sbjct: 504 HAREQAPAAVDDAMEH-LDLGHLQKVLANLLRERVSIRDMVTILETLADYASTTKDLDRL 562

Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLL 629
           T  VR +L R I Q       ++ V+ L+  LE+L+L ++Q         L+P +   L+
Sbjct: 563 TEYVRQSLARQIVQPLLGMDKQLPVLTLEPKLEQLILDSIQPSDFGSYMTLDPRVLQELM 622

Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677
                 + +  + G  PVL+    +R  L R   R LPQL+VLS  EL
Sbjct: 623 QSLAREMEKMVLKGYNPVLVCAPVVRINLKRVTERQLPQLMVLSYNEL 670


>UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2
           Tax=Bacteria RepID=Q1Q6S4_9BACT
          Length = 695

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/661 (43%), Positives = 446/661 (67%), Gaps = 17/661 (2%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++ I  ++++P+P FI+DLL T NI+L +++LLV++  +  L+ ++FP+ILLF TL RLA
Sbjct: 29  VISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALDLSSFPSILLFMTLFRLA 88

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNVASTR IL++G+      GKV+ AFG F+VGGN  +G+VVF+I+V+I F+VITKGA R
Sbjct: 89  LNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVFLIIVVIQFIVITKGATR 143

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           I EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++EA+FYG+MDGA KFV G
Sbjct: 144 IGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSREAEFYGAMDGAGKFVSG 203

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DA+AGI+I++INI+GG+++G ++ GMS+  A + YTLLT+GDGLV+QIP+ +I+TA+ VI
Sbjct: 204 DAVAGIIIVLINIIGGIVMG-MRSGMSVSEAMQHYTLLTVGDGLVSQIPSFIIATASAVI 262

Query: 268 VTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW 326
           VT+ S T +++G  +  QLFS P+ +  +  +L L  +VPG+P + FL+  AG   + ++
Sbjct: 263 VTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPKIPFLVL-AGFFWMMFF 321

Query: 327 IRGREQK----APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382
           +  R  K    A A  K  +        E +   +   D + +EVGY+L+P+VD  ++G 
Sbjct: 322 VLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELEVGYKLVPLVDPNKNGG 381

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
           +L RI ++R + A++MG + P + +RDN+ L+  +Y + ++G EI  G+   G +LAI+ 
Sbjct: 382 ILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQEIAHGELLTGSYLAIDS 441

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
           G     + G  T+DPA+GL A+WI  A+KE A+  GYTVV+ ++V+ THL  +I  HA E
Sbjct: 442 GAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPASVMITHLTEIIKTHAYE 501

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
           +  R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL E+VPIRD+ +ILET+A
Sbjct: 502 ILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLKEQVPIRDLSSILETIA 561

Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL---QGGG- 618
           ++AP   D  +LT  VR  L R I +++   + ++ VI  D  LE+ +  A+   + G  
Sbjct: 562 DYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHLEQTIANAIHKTEKGNL 621

Query: 619 -GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677
             L+P +A +++ +  E +      G   VLL + ++R  + R +  +LPQL VLS  E+
Sbjct: 622 LALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRLIENALPQLAVLSYKEI 681

Query: 678 S 678
           S
Sbjct: 682 S 682


>UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6J9_9SPHN
          Length = 700

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 281/675 (41%), Positives = 419/675 (62%), Gaps = 10/675 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P  IL I+ +MV+P+PA +LD+    NIALS+ VL+ AM  Q+ L+F++FP++LLF 
Sbjct: 11  LALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFSSFPSVLLFA 70

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+IL+IIN MV+
Sbjct: 71  TLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLILMIINLMVV 130

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGAGR++EV ARF LD +PGKQMAIDADL AGL+  DEAK RR E+  EADFYGSMDGA
Sbjct: 131 TKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEADFYGSMDGA 190

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFV+GDA+A +LI++IN++ GL++G+  HG++ G AAE+Y  L +GD LVA +PAL++S
Sbjct: 191 SKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALVASVPALLLS 250

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            AA VIVTRVS  +D+  Q+  QL ++P + L  A +L ++G +P MP  + L  ++G  
Sbjct: 251 IAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSIILPLSSGTF 309

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
            L + +R   +     P+P    + + +   T  +V  +  + +++GY LI + D ++  
Sbjct: 310 YLWFRLRKNHEARKEMPEPEAKPDPSHI---TIEEVTDQTLVTVQLGYGLISLTDDKRGA 366

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            L+ R+  +RK+  Q  GF+ P   I D+ +L P  YRI + G  +G G   PG  LAI+
Sbjct: 367 RLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKINPGHLLAID 426

Query: 442 PGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
            G   G  T+PG  TVDP+FG  A+WIE   ++ A  +GY  V+  +V+AT ++ L+   
Sbjct: 427 TGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIATQVHQLLGAR 486

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           A +L G  + + L++ +     +L + + P  ++L  L ++L++LL + + +R    +  
Sbjct: 487 AQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGISLRHALRVFS 546

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
           +++  A   ++   L  +VR  LG  I  +  P   ++ VI L   LE ++   LQ    
Sbjct: 547 SISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMVTGGLQDPSS 606

Query: 620 ----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675
               +EP LA  +  +    + +++     P L+V    R  LS  LR   PQ +VLS  
Sbjct: 607 GEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRAPQCLVLSIN 666

Query: 676 ELSDNRHIRMTATIG 690
           EL   + I + A +G
Sbjct: 667 ELPVAQPIEVIAVVG 681


>UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria
           RepID=FLHA_HELPJ
          Length = 733

 Score =  500 bits (1288), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 296/727 (40%), Positives = 441/727 (60%), Gaps = 42/727 (5%)

Query: 2   SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
           S LA     P   +  Q + LA  + ++ IL+++++PLP F+LD L T +IALS++++L+
Sbjct: 6   SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            ++  +  +F+AFPT+LL  TL RLALNVA+TR+IL +G+ G +A   ++ AFG F V G
Sbjct: 66  GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA
Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q  MS+  +A +
Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +T+LTIGDGLV QIPAL+I+TA G++ TR +   ++D   +++ QL +    +++  A L
Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA------------------PAEPKPV 341
            L   +PG+P    L F   L     W+  RE K                     +P   
Sbjct: 306 LLFATIPGLPTFS-LAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSS 364

Query: 342 KMAENN-TVVEATWNDVQLEDS-----------LGMEVGYRLIPMVDFQQDGELLGRIRS 389
           K+  +  T    T  +++ E+            L + +GY+LI + D +Q G+LL RIR 
Sbjct: 365 KIKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRG 424

Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449
           IRKK A + GFL P + IRDN+ L P  Y I +KG+ IG G   P ++LA+N G     +
Sbjct: 425 IRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREI 484

Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509
            G  T +PAFG++A+WI++  KE+A IQGYT+++ STV+ATH + L+ ++A +   + E 
Sbjct: 485 EGIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEV 544

Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQ 568
           + LL+R+A++ P + E+     +    +  VLQ LL EK+PI+DM TILET+ + AP +Q
Sbjct: 545 KSLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQ 602

Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPG 623
           +D + LT  VR  L R IT  +      +  +   T  E+ LL  L+  G      L  G
Sbjct: 603 NDVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVG 662

Query: 624 LADRLL-AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682
              +L+   ++EA+   +   AP +L+V   LR  LS  + ++   +VVLS+ EL  N +
Sbjct: 663 ELQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSN 722

Query: 683 IRMTATI 689
                TI
Sbjct: 723 FEALGTI 729


>UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia
           RepID=C4ZAM7_EUBR3
          Length = 680

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/663 (39%), Positives = 415/663 (62%), Gaps = 20/663 (3%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
             ++P+P+F+LD++  FN+++++++L   +F +  L+ + FPT+LLFTT+ R++LNV+ST
Sbjct: 19  FFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTLLLFTTIFRISLNVSST 78

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           R+IL  G+ G      VV  FG F+ GGN  IG +VF++L+II F+VI KG+ R+AEV A
Sbjct: 79  RLILSTGNPGV-----VVNVFGQFVGGGNLVIGAIVFIVLIIIQFVVINKGSERVAEVTA 133

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+MDGA+K+V+GDA AGI
Sbjct: 134 RFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGAMDGATKYVKGDAAAGI 193

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I +IN+VGG ++GV+  G+ +  A + + LLTIGDGLV+QIP+L+IS + G++VT+ S 
Sbjct: 194 IITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPSLLISLSTGILVTKGSN 253

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR--E 331
           + D   +++ QLF    V+ + + VL +LG++  + N  +L      L +A+++ G+  +
Sbjct: 254 ENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG---LAVAFFVTGKNLD 310

Query: 332 QKAPAEPKPVKMAENNTVVEATW---NDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGR 386
           +KA  E    + A+  +  E      N V L   D + +E GY +IP+ D  Q G+LL R
Sbjct: 311 KKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIPLADVNQGGDLLDR 370

Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446
           +  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+     ++A+NPG   
Sbjct: 371 VVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEILFDHYMAMNPGYVE 430

Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506
             + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL  +I  H AEL  R
Sbjct: 431 EEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRSHIAELLTR 490

Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566
           Q+ Q L++ + +  P + ++L+P ++ L  + KVLQNLL E + IRD+ TI ETLA+HA 
Sbjct: 491 QDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRDLLTIFETLADHAQ 550

Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGG-GLE 621
              D   LT  VR  L RAI+ ++FP  +   VI LD  +E+ ++    Q  QG    L+
Sbjct: 551 TTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSSVKQTEQGSYLSLD 610

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681
           P     ++   +  + + E LG   +++ +  +R    +        L+VLS  E+  N 
Sbjct: 611 PDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKDLIVLSYNEVESNV 670

Query: 682 HIR 684
            ++
Sbjct: 671 ELQ 673


>UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia
           RepID=B1ZR28_OPITP
          Length = 712

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/675 (41%), Positives = 418/675 (61%), Gaps = 40/675 (5%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
           +++LP+P  +LD  F  NI LS++VLL  ++ +   EF++FPT+LL  TL RLALN++ST
Sbjct: 18  LLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTLLLALTLFRLALNISST 77

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           R++L++G+     AG+V++AFGHF++ GN+ +G VVF+ILV+INF+VITKGAGRIAEV A
Sbjct: 78  RLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVINFVVITKGAGRIAEVSA 132

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD +PGKQMAIDA+LNAG+I E +A  RR +V +EADFYG+MDGASKFVRGDAIAGI
Sbjct: 133 RFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGAMDGASKFVRGDAIAGI 192

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I ++N++GG  +GVLQ G+S+G + + +TLL+IGDGLV+QIP+LV+S AAGV+VTR S 
Sbjct: 193 IITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPSLVLSVAAGVLVTRASE 252

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWW----IRG 329
           + ++G Q+  Q+F  P  M ++A +L   G++PGMP L F    AGL   +W+    ++ 
Sbjct: 253 NNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPF----AGLAAFSWFLGKMLKD 308

Query: 330 REQKA-------------------PAEPKPVKMAENNTVVEATWNDVQ--LE-DSLGMEV 367
           +E K                      +      A           DV+  +E D   +E+
Sbjct: 309 QEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVRKLIEVDVFAIEL 368

Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427
           GY L+ + + +  G+LL R+  +RK  A+E G + P V +RDN++L+P  YR L++G  +
Sbjct: 369 GYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEPNDYRFLLRGKAL 428

Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487
             G  +P RWLA+N   +   L G  T +P F L A WI+   K+ A+I GYTVV+ ++V
Sbjct: 429 ARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAEINGYTVVDPASV 488

Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
           + THL+  +  +A  L GRQE Q L+D + Q  P L  +L+P +VTL  + +VLQNLL E
Sbjct: 489 LITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLGIIQRVLQNLLRE 548

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
            + I ++  ILE + + A +  +P +L+ ++R  LG     ++      V  + +D   E
Sbjct: 549 NISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPGVVRAVTVDPRFE 608

Query: 608 RLLLQALQG-----GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
           + L   +Q      G  L+P     +L +    ++     G P VL+V+  +R  L RF 
Sbjct: 609 QWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVVSSEVRLPLKRFF 668

Query: 663 RRSLPQLVVLSNLEL 677
             S P+L VL+  EL
Sbjct: 669 ESSFPRLTVLAFQEL 683


>UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia
           RepID=B0K1R1_THEPX
          Length = 673

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 295/667 (44%), Positives = 431/667 (64%), Gaps = 21/667 (3%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           I+ ++++P+P  I+D L   NI LSI++LL  M+ +  L+F+ FP+ILL TTLLRLALN+
Sbjct: 15  IVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSILLITTLLRLALNI 74

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150
           +STR+IL   +     AG V++AFG F++GGN  +G ++F+I+ I+ F+VIT+GA R++E
Sbjct: 75  SSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQFIVITRGAERVSE 129

Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210
           V ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+MDGASKFV+GDAI
Sbjct: 130 VSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGAMDGASKFVKGDAI 189

Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270
           A I+I++INIV GL++G++  GM +  A  +Y +LT+GDGLV+QIPAL+ISTA G+IVTR
Sbjct: 190 ASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPALLISTATGMIVTR 249

Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA--GLLGLAWWIR 328
            +++ ++G  ++ QLF+ P ++ ++A +L  L LVP +P L  +L  +    LG A   +
Sbjct: 250 SASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIGSLFAYLGFAGTQK 309

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388
              ++   E    ++ EN    +  +  +Q+ D + +E GY LIP+      GELL RI 
Sbjct: 310 VTIKEEEQEENIKEL-ENIRDPKKVYELLQV-DPIELEFGYELIPLA----SGELLDRIV 363

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
            IR++ A ++G + P++ +RDN+ L+P  Y I ++G EI  G  Y  R++A+  G     
Sbjct: 364 MIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRYMAMTAGEIDED 423

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           + G    +PAFGL AIW++   + +A+ +GYTVV+  +V+ATHL H+I QHA EL GRQE
Sbjct: 424 ISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIKQHAHELLGRQE 483

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
            Q L+D V    P L E+LVP ++T+  + KVL NLL E + IRD+ TILETLA++API 
Sbjct: 484 VQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTILETLADYAPII 543

Query: 569 SDPHELTAVVRVALGRAITQQWFP-GKDEVHVIGLDTPLERLLLQAL---QGGG--GLEP 622
            D   LT  VR AL R I+ ++ P GK  + VI LD  +E+L+  ++   + G    LEP
Sbjct: 544 RDTDVLTEYVRQALARTISNKYAPYGK--IEVITLDPSVEQLISSSITQTEHGSYLALEP 601

Query: 623 GLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682
             A R+L    E   +  + G  PV+L     R  L + + +  P + VLS  EL  N  
Sbjct: 602 SSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVLSYNELLPNIE 661

Query: 683 IRMTATI 689
           +    T+
Sbjct: 662 VASVETV 668


>UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter
           RepID=B4UG32_ANASK
          Length = 692

 Score =  491 bits (1265), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 297/673 (44%), Positives = 434/673 (64%), Gaps = 10/673 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA  I +L IL+++++PLP   LD+    +I LS+++LLVA+   R +EF+ FP++LL  
Sbjct: 17  LAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFPSLLLLV 76

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLALNVA+TR+IL +G  GA AAG ++E FG F VGG+  +G+VVF+IL+I+NF VI
Sbjct: 77  TLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLIVNFTVI 136

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR  + +E +F+G+MDGA
Sbjct: 137 TKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFFGAMDGA 196

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDA+AG+ I  +NIVGGLL G+L+  +S+  AAE+YTLLT+GDGLV+Q+PAL++S
Sbjct: 197 SKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQMPALLVS 256

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           TAAG++VTR +   D+G Q+ +Q+   P V+  +A VL  LGL+PGMP + F      LL
Sbjct: 257 TAAGLVVTR-AAGSDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGGVAGALL 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
             A    GR++ A   P+P    +    ++       LE      VGY L+P++D  + G
Sbjct: 316 LAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALELG----VGYGLVPLIDLDKGG 371

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
           EL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P R +A++
Sbjct: 372 ELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPERLMALD 431

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
           P      + G   VDPAFGL A+WI  A + +A+  G T+V+A++V+ THL+ L+ ++A 
Sbjct: 432 PNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSELLRRNAH 491

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           E+ GRQE Q+LL  + ++ PKL ED+VPG ++L  L +V++ LL E V +RD+RT+LE +
Sbjct: 492 EIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLRTVLEAV 551

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQGGG 618
           A+ AP   +P  L    R  L R +T +       V  + LD   E   R  L A  G  
Sbjct: 552 ADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLGASDGEA 611

Query: 619 GLEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
            L P +  A RL+A  +   +R    G P VLL    LR  L  F  R +P + VL+  E
Sbjct: 612 ALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQVLAARE 671

Query: 677 LSDNRHIRMTATI 689
           L+    +    T+
Sbjct: 672 LAPGTTVEPAGTV 684


>UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F997_ACIC5
          Length = 700

 Score =  491 bits (1263), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 289/669 (43%), Positives = 421/669 (62%), Gaps = 19/669 (2%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P+  + ++ +M++P+PA +LDLL   ++A S++V L A+  ++ ++F+ FPT+LL  
Sbjct: 24  LALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLLLL 83

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+V+
Sbjct: 84  TLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFLVV 143

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           + GA R AEV ARF LD +PGKQMAIDAD+NAGLI E  A++RR  + QEA+FYG+MDGA
Sbjct: 144 SHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMDGA 203

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           ++F + D++A ILI  INIV GLL+G LQHG+++  A ++YT+LT+GDGLV  IP+L++S
Sbjct: 204 ARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLLVS 263

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            A G+++TR S+   +  ++  QLF   + + +++ VLG L LVPG+P L FL+    L 
Sbjct: 264 VAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVILA 323

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
           G+   +   +    A  +  K A+ +       + V   D L +E+G++LIP+VD  Q G
Sbjct: 324 GIGRTVTKEQPAEEAAEEAGKKADPSRA--DNLDSVLKVDDLSLEIGFQLIPLVDEAQGG 381

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            +L R+R++R+  A E+GFL P VHI DN+ L+P  Y + ++G+EIG       + LA++
Sbjct: 382 LMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLAVS 441

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
                  + G+   +PAFG NA WI   L+EQA   GY+VV+ +T ++THL  LI  HA 
Sbjct: 442 NEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTHAH 501

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           EL  R E ++LLD + +  PKL E+LVP V++L  + KVLQ LL E+V IRD+ TILETL
Sbjct: 502 ELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILETL 561

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621
            E A        +   VR ALGR +TQ+       + V+ L+  LE  L+ A Q     E
Sbjct: 562 VEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQS----E 617

Query: 622 P---GLADR-------LLAQTQEA---LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           P    L DR       L A+  E+   LS+     A PVLL     R  L R+L    P+
Sbjct: 618 PPTDALLDRRTPASAQLFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPR 677

Query: 669 LVVLSNLEL 677
           + VL+  E+
Sbjct: 678 ITVLAPPEI 686


>UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4
           RepID=C9R9X8_AMMDK
          Length = 684

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/634 (44%), Positives = 404/634 (63%), Gaps = 9/634 (1%)

Query: 57  MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116
           ++LLV +FT   L+F+ FPT+LL  TL RLAL VA+TR+IL     G A+AG V+ AFG 
Sbjct: 54  VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108

Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176
           F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI
Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168

Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236
            E EA++RR  + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++  GM + 
Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228

Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296
            A  +YTLLTIG+GLV QIPAL++ST+AGV+VTR   +   G +   QL + P ++ ++A
Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI-RGREQKAPAEPKPVKMAENNTVVEATWN 355
           A+  LLGLVPG+P+L+ L        L +++   R+++  A   P    E  T  E    
Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348

Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
             Q+E  L +E+GY L+P+   +Q G+LL R+ ++R++ A E+G     + IRDN+ L P
Sbjct: 349 YFQVE-PLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPP 407

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
             Y   ++G+E   G+  PG +LA++P      L G AT +P FGL A WI  A KE+A+
Sbjct: 408 NVYLFRLRGIEAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAE 466

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
             G+TVVE S V+ATHL+  I Q+A  L GRQE ++LLD + ++ P L E+LVPG++ L 
Sbjct: 467 AAGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLG 526

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
            + KVLQ LL+E+VPI+D+ +ILE LA+ A +  DP  L    R AL R ITQQ +   +
Sbjct: 527 EVQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQ-YARDN 585

Query: 596 EVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
           ++ V+ L    E  L QA + G  LEP    RLL +  +A+      G  PV+L     R
Sbjct: 586 KLSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGAR 645

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            LL R +    PQ+ V+S  E+     +    T+
Sbjct: 646 LLLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679


>UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae
           RepID=A3U131_9RHOB
          Length = 701

 Score =  490 bits (1261), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/671 (40%), Positives = 403/671 (60%), Gaps = 10/671 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           + L+L+++ +PLP  ILD     +++LS+++L+VA++  + L+F +FPT+LL  T+LRL+
Sbjct: 31  VTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFPTLLLVVTMLRLS 90

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNVASTR+IL EGHTG  AAG V+E F  F+V GNF IGIV+F ILV+INF+VITKG+ R
Sbjct: 91  LNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVVINFLVITKGSTR 150

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD MPGKQMAIDADL AGLI E EAK RR  +  E+ F+G+MDGASKFVRG
Sbjct: 151 IAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFFGAMDGASKFVRG 210

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DA+AGI+I +IN++GG+L+GV+Q+ +S+  AA SYT LTIGDGLV Q+PAL++S AAG+I
Sbjct: 211 DAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQVPALIVSLAAGLI 270

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           VT+  T+    E ++ QL   P  + ++A +L  +GL+PG P +VF      + GL W+I
Sbjct: 271 VTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFALGGLMAGLGWYI 330

Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLIPMVDFQQDGELL 384
             +E++   + +  ++ +      A    VQ     D L +E+G  L+P++    D  L 
Sbjct: 331 GQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALVPLMS-AADAALP 389

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
           G+I+S+R  FA+E GF+ P V I D   L    Y +L++GVE+  G+  P   + +NP  
Sbjct: 390 GKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEVRPNGMMVVNPSD 449

Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504
               + GEA  DP FGL+A+WI+     +A+ QGYTVV+  +V+ THL  ++ +H  +L 
Sbjct: 450 NPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHLTEVVKEHMPDLL 509

Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564
                Q L++ + ++  KL  + + G      +  VLQ LL E+V +R++  I+E +AE 
Sbjct: 510 TYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVRNLPLIVEAIAEA 568

Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG----- 619
               S+   +   VR  L   I +        + VI L    ++  + +++  G      
Sbjct: 569 KRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVDSIRMNGDDKTLI 628

Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679
           + P      +   +  +         P +LV+   R  +   L R  P   V+S+ E+  
Sbjct: 629 MSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSPMTQVISHNEVHR 688

Query: 680 NRHIRMTATIG 690
           N ++R  ATIG
Sbjct: 689 NANLRTLATIG 699


>UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae
           RepID=A3ZZP0_9PLAN
          Length = 695

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 297/680 (43%), Positives = 430/680 (63%), Gaps = 21/680 (3%)

Query: 25  PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLL 84
           P+ I+  + ++++PLP ++++LL T NI   +++LL  ++ Q  LEF  FP++LL TTL 
Sbjct: 17  PVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVFPSLLLATTLA 76

Query: 85  RLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143
           RL LNVA+TR+IL +    G  AAG V+E+FG F+ G   A+GI++F+I+++I FMVITK
Sbjct: 77  RLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIIIIVIQFMVITK 136

Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203
           GA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+ADF+G+MDGASK
Sbjct: 137 GATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQADFFGAMDGASK 196

Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263
           FVRGDAIAGI+I +INIVGG ++G LQ GMS+  AAE YT LTIGDGLV+Q+PA +IS A
Sbjct: 197 FVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVSQVPAFLISLA 255

Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           AG++VTR S   ++  + V QL S P  ++++ A LGLL +  G+P +  L    G LG+
Sbjct: 256 AGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPLLTLCGGCLGI 314

Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG-----MEVGYRLIPMVDFQ 378
           A++I+ ++++  A+ +  +  + +    A   D ++ED L      ME+G  L+ +    
Sbjct: 315 AFFIKKQDRQDEADKQTAETKKQDQEKAAKKED-RIEDYLSIDPMEMELGVGLVRLAAPD 373

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           + G+LL R+  +R+  A E+G + P V IRDNM L   +YRI +    +     YP R L
Sbjct: 374 RGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAENTIYPDRLL 433

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           AI    + G LPGE T DPA+   A+WIE  L+ QA++ GYT+VE S+V+ATHL  +  +
Sbjct: 434 AITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLATHLQRVAKK 493

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           HA EL  R   + LLD +  E P + ++L+PGV+ L  +  VL NLL E+VPIR +  IL
Sbjct: 494 HADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEVPIRQLAIIL 553

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           ETL +HA    D   LT  VR  L R I  ++   ++++ V+ LD  ++      +  G 
Sbjct: 554 ETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQ----DRIAAGI 609

Query: 619 GLEPGLADRLLAQTQEALSR------QEML--GAPPVLLVNHALRPLLSRFLRRSLPQLV 670
             E G   R+  Q  E   R      +++L  G PP++LVN  +RP L +     +P L+
Sbjct: 610 DTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNHIPDLI 669

Query: 671 VLSNLELSDNRHIRMTATIG 690
           VLS+ E++ +  I     I 
Sbjct: 670 VLSHNEVTRDTLIESVGIIS 689


>UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales
           RepID=C2ED96_9LACO
          Length = 692

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/652 (38%), Positives = 397/652 (60%), Gaps = 26/652 (3%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  +LD+    N+ ++I +LL+ +FT+  LEF+ FPT+LL TT+ +L LN++STR IL
Sbjct: 33  PLPTSLLDIFIVTNLTVAINILLITLFTKSVLEFSTFPTVLLITTMFKLGLNMSSTRSIL 92

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
             G+      G V+EAF   + G N+ +GI++FVI++I+  +V+T G+GR++EV ARF L
Sbjct: 93  TTGN-----GGHVIEAFADVVAGENYIVGIILFVIIMIVQLVVVTNGSGRVSEVSARFTL 147

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQMAID+DLN+G I E++A++RR ++ +EADFYGSMDGASKFV+GDAIAGI+I++
Sbjct: 148 DAMPGKQMAIDSDLNSGAITEEQARQRRKDLQREADFYGSMDGASKFVKGDAIAGIIIVL 207

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277
           +N++GG ++   +  +S+  A   +  L IGDGLV+ +P+L+IS A GVIVTR   +   
Sbjct: 208 VNLIGGTIIFTAKGDLSITDALSQFGKLAIGDGLVSSVPSLLISLATGVIVTRSEDNSTF 267

Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337
           G  + +    NP +  +   +L +L LVPG P + F++ +  +      ++ +E++   E
Sbjct: 268 GTDIASDALRNPQLFKVVGVILLVLALVPGFPKIPFIVLSLAMFAANVLVKQKEEQRIKE 327

Query: 338 PKPVKMAENNTVVEATWNDVQLEDS---------LGMEVGYRLIPMVDFQQDGELLGRIR 388
               ++ E  T+      + Q ED          L +E+GY LIP+VD   D  L+ RI 
Sbjct: 328 ----RIKEEQTLALQRKKEEQEEDDDVASFQVEPLSIEIGYGLIPLVDSTIDNSLMNRIS 383

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
           +IR++ A E+G L   V IRDN+ L    Y I ++G E+G GD YP +++ I+  +  G+
Sbjct: 384 AIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIRGNEVGHGDIYPDKYMIISQ-SDDGS 442

Query: 449 LP--GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506
            P  G  T +PAF L+A+WI+   KE A +QG+TV+E  TV+ATHL  +I  HA EL GR
Sbjct: 443 FPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVIEPLTVIATHLKEIIHAHAPELLGR 502

Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566
           QE Q+LL+ +      + ++L+P ++ L  + KVLQNLL+E VPI D+ TILETLA++  
Sbjct: 503 QEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQNLLEENVPINDLSTILETLADYGT 562

Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LE 621
           +  D   LT  VR  L R I  ++    D ++V+ +   +E ++ Q++Q         ++
Sbjct: 563 VTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTIHPKVEEMVSQSIQKTATGSYPVMK 622

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
           P   +++L    +   +        V+L +  +R    + +  + P + VLS
Sbjct: 623 PDSVNKILTAIGDISQQMAAQNMNYVILTSPKIRLAFRKLIAFNFPDVAVLS 674


>UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales
           RepID=Q5HUS5_CAMJR
          Length = 724

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/702 (39%), Positives = 422/702 (60%), Gaps = 52/702 (7%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
            ++ IL+++++PLP+ ILD     +IALS++++L++++  +  +   FPT++L  TL RL
Sbjct: 32  FLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRL 91

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           +LN+A+TR+IL EG  G  A  +++ AFG F+VGGN  IG++VF ILV+INFMV+TKG+ 
Sbjct: 92  SLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGST 151

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R++EV ARF LD MPGKQMAIDADLNAGLI E  A+ RR EV  EA+FYG+MDG+SKF++
Sbjct: 152 RVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIK 211

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDA+AGI+I +INI+GG L+G  QH M++  AA +YT+LTIGDGLV+QIP L+ STA  +
Sbjct: 212 GDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAI 271

Query: 267 IVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           I+TR S D ++  E  + QL S    +L+   VL +  LVPG+P L     + G + L +
Sbjct: 272 IITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTL-----SLGFMALVF 326

Query: 326 WIRGREQKAPAEPK----PVKMAENNTVVEA-------------------------TWND 356
              G   K   E K     VK ++ +  V +                           ND
Sbjct: 327 LSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKIND 386

Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           +   + L +E+GY LI +     + EL  RIRS+R+  A+ +GFL P + IRDN+ L+P 
Sbjct: 387 ILKVEILELELGYGLIKLA----ENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPN 442

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQI 476
            Y   +KGV I S + YP ++LA++ G     + G AT +PAF  +A+WI++ LK++A +
Sbjct: 443 EYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATL 502

Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536
            GY V++ ++V++TH++ LI  HA+EL  RQE Q LLD+V  + P + E  + GV  ++ 
Sbjct: 503 NGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGAL-GVAPVSL 561

Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596
           + K+L++LL   +PI+DM TILE++++ A +      +   VR +L R IT  +   K  
Sbjct: 562 IQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGN 621

Query: 597 VHVIGLDTPLERLLLQALQGGGG--------LEPG-LADRLLAQTQEALSRQEMLGAPPV 647
           + +  LD+    +L++ +Q   G         + G L D L A+   A++   +   P +
Sbjct: 622 LDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVA-AVANGRI--KPFI 678

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           L V   LR  ++         +VVLS  E+++N +      I
Sbjct: 679 LCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720


>UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria
           RepID=B5ZM53_GLUDA
          Length = 731

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/668 (41%), Positives = 422/668 (63%), Gaps = 10/668 (1%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++++L+++++PLP FILD+  + +I  S++VL+VA+F +RTL+F +FPT+LL TTLLRL+
Sbjct: 67  VVVLLAILIIPLPTFILDMGLSLSITSSVLVLMVALFLERTLDFTSFPTLLLLTTLLRLS 126

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           L +A+TR+IL  G  G  AAG VV AFG FL+GG+  IG +VF IL+++NFMVITKG+GR
Sbjct: 127 LEIATTRLILSHGSEGTYAAGHVVAAFGGFLMGGDLFIGGIVFCILLVVNFMVITKGSGR 186

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEV ARF LD MPGKQMAIDADL++G I E  A+ +R E+  E+ FYG+MDGA+KFVRG
Sbjct: 187 IAEVAARFFLDSMPGKQMAIDADLSSGAINERTARAKRKELEDESAFYGAMDGAAKFVRG 246

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAG++I  INIVGGL +G+L+H M +  AA ++T LT+GDGLV+QIPAL++STAAG++
Sbjct: 247 DAIAGLIITAINIVGGLAIGILRHDMPLSEAASTFTTLTVGDGLVSQIPALLVSTAAGIV 306

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           VT+  +D      +V QL  NP  + ++  +  L  ++PG+P L FL+   G  G+  W+
Sbjct: 307 VTKGGSDGSTDVTLVRQLGGNPKPLAVAGGLSALFAIMPGLPALPFLVIAVG-AGIGAWM 365

Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387
           R +      +    +++   T      +++   D L +E+G+ L+P+    ++ +L  +I
Sbjct: 366 RHKTPVKDGDGDVTQISPQPTA--PPISEMLKLDLLRLELGFGLLPLTS-GENPQLTEQI 422

Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447
           +++R+  A E+GF+ P V I+DN+ L    Y I +K +EIGSG+  PG+ +A++P   A 
Sbjct: 423 KALRRTVATELGFITPPVRIQDNILLPSDNYVIKLKEIEIGSGEVKPGKLMAMSPSGGAP 482

Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507
            LPG+ T +PAFGL A+WI+ +LK +A     T+V+ ++V+ THL+  + Q+  +L    
Sbjct: 483 DLPGDRTTEPAFGLPAVWIDPSLKPKAVAMKCTIVDPASVIVTHLSEAVRQNLPDLLTYV 542

Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567
             Q LLD + +E  KL  DL+P  V L+T+ +VLQ+LL E+V IRD+ TILE++ E   +
Sbjct: 543 ATQTLLDDLPREQQKLVNDLIPSQVPLSTIQRVLQSLLAERVSIRDLPTILESIQEGCSL 602

Query: 568 Q-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLE 621
                  LT  VRV L R I      G   + +I L    E   +  + G        + 
Sbjct: 603 GLRGVQALTGHVRVRLSRQICNALVGGAGYIPMITLSAEWEAEFMAHITGQADDRRLAMP 662

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681
           P + ++ + + +E  +     G  PV++V+  +R  +   + R  P + VLS  E+    
Sbjct: 663 PSMLNKFVGKLREVFNTVSASGEIPVVVVSTPVRDSMRSIVERVRPSVSVLSQSEIYPRS 722

Query: 682 HIRMTATI 689
            I+  ATI
Sbjct: 723 RIKTVATI 730


>UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae
           RepID=D2QZ28_9PLAN
          Length = 690

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 287/677 (42%), Positives = 431/677 (63%), Gaps = 13/677 (1%)

Query: 17  TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76
           +Q + L  P+ I+  + ++++P+P+ ++DLL   NI +S++VLL  ++ +  LEF  FPT
Sbjct: 5   SQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIFPT 64

Query: 77  ILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           +LL TTL RL LNVASTR+IL    T G  AAG V+ AFG F+ G    +GI+VFVI+V+
Sbjct: 65  MLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVIIVV 124

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+ADF+
Sbjct: 125 IQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQADFF 184

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M +  +AE +T L+IGDGLV+Q+
Sbjct: 185 GAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVSQV 244

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PA + S AAG++ TR S  Q++    + QLFSNP  ++++   + +L L   +P +  L 
Sbjct: 245 PAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVLVLT-NLPKIPLLA 303

Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPV---KMAENNTV-VEATWNDVQLEDSLGMEVGYRL 371
             AG  GLA  +  R+QK+  E K V   K AE  T   E    D    D + +E+G  L
Sbjct: 304 IGAGCGGLALML-SRKQKS-EEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           I + + +Q G+LL RI ++R+  A ++G + P V ++D   L   +YRI + G  + +G+
Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
             PG++LAI+ G   G +PG  T DPAF   A+WI+S L+E+AQ+ GYT VE + V+ATH
Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L  ++ +HA EL  R   + LLD + +  P + ++LVP  + ++ + +VLQ LL E+V I
Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R++ TILETL + A    DP  LT  VR  L R I+ ++   ++ +HV+ LD  LE  + 
Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
             ++         L+P + +R+  +    L++    G  P++LV+  +R  L      +L
Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661

Query: 667 PQLVVLSNLELSDNRHI 683
           P+L VLS  E++ +  +
Sbjct: 662 PRLHVLSFNEVTRDTKV 678


>UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria
           RepID=Q01PP7_SOLUE
          Length = 699

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/661 (43%), Positives = 418/661 (63%), Gaps = 10/661 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P+ +L I+  ++ PLP F+LDLL   +I +S+ VL+V+++  R +EF +FPT LL  
Sbjct: 31  LAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEFTSFPTTLLLL 90

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F++L+ I ++VI
Sbjct: 91  TLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFLVLIAIQYVVI 150

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
             GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR  +  EA+FYG+MDGA
Sbjct: 151 NHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATEAEFYGAMDGA 210

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           S+F + DA+A ILI  INI+ G L+GV QHGM    A E+YT+LTIGDGLV  IPAL+IS
Sbjct: 211 SRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGLVTVIPALMIS 270

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            + G+IVTR S++  +G +   Q+  N   +LL+A VL  L  +PGMP L FL+   G  
Sbjct: 271 ISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKLPFLVLGFGAG 330

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
              W +R  E    A P P    +     ++  + +++E  L +EVG  LI +V+  Q+ 
Sbjct: 331 AGGWRMRKTELAQIAAP-PEDTGKPAPAKDSVESLLRVE-PLAIEVGLGLIGLVEGAQES 388

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            LL RI +IR++ A ++G+L P V + DN+ L+   Y I +KGVEI   +   G  LAI 
Sbjct: 389 PLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYELPQGCELAIA 448

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
            G A+  L G+AT DPAFG+NA WI +   ++A+  GYTVV++ +V+ THL+ +I ++A 
Sbjct: 449 TGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTHLSEIIRRYAH 508

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           ELF RQ+A++LLDRV  E PK+ ED+VP ++ L+++ +VLQNLL E+V IRD  +ILE L
Sbjct: 509 ELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSIRDAVSILEAL 568

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618
            E      +P  LT  VR A+ RA+ + +     ++    +D  +E  +  A++ G    
Sbjct: 569 GEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVEAAVEHGEQNS 628

Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
              L P     +L +    +   E    P V + +   R  L +    ++P L  L++ E
Sbjct: 629 HIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTMPNLFFLAHNE 685

Query: 677 L 677
           +
Sbjct: 686 V 686


>UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae
           RepID=A9BHY7_PETMO
          Length = 710

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 285/690 (41%), Positives = 435/690 (63%), Gaps = 30/690 (4%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           ILI+ I+ +MV+P+P F+LD L   NI +SI++LL  ++ +R L+ + FP++LL  T+ R
Sbjct: 15  ILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDISIFPSLLLVMTIFR 74

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           LALNV+STR+IL+ G       GKV+ AFG F+VGGN+ +GI++F+ILVII F+VITKG 
Sbjct: 75  LALNVSSTRLILLNGKN---FEGKVIRAFGDFVVGGNYIVGIIIFLILVIIQFLVITKGT 131

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EADFYG+MDGASKFV
Sbjct: 132 ERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREADFYGAMDGASKFV 191

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           RGDAIAG++I +IN+VGGL++G+LQ G+++  AAE + LLT+GDGLVAQIPAL+IST+AG
Sbjct: 192 RGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLVAQIPALLISTSAG 251

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +IV+R ++  + G  ++ QL S+  V+ ++  ++ +LGL+  +P    L+  AGLL +A+
Sbjct: 252 MIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFPSLILGAGLLFVAY 311

Query: 326 WIRGREQK--------------APAEPKPVKMAENN------TVVEATWNDVQLEDSLGM 365
             R  E +                A PK  K   +       T  E     +Q  D++ +
Sbjct: 312 ANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEEVSEVLQ-GDTIEV 370

Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425
           ++GY LIP+ D  Q G+LL RI  +RK+ A E+G +   + IRD++ L    Y I ++GV
Sbjct: 371 DIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLLSSNEYVIKLRGV 430

Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485
           E+G  +  P R LAIN G A   LPG  T +PAFGL A WI+ +LKE+A  +GYT V+A 
Sbjct: 431 EVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEEAIEKGYTTVDAP 490

Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545
           +V ATHL+  I ++A E+ G +E + L+D +      L + L+P ++ +  L KVL  LL
Sbjct: 491 SVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLKMHELKKVLSELL 550

Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHE-LTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
            E+V IR++  I E+L E A    +  E L   VR +LGR I +       E+HV  LD 
Sbjct: 551 YERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKSDDGELHVSALDP 610

Query: 605 PLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
            +E+ L ++++         LEP  ++ L+ +  ++L    M G  P+L+ +  +R   +
Sbjct: 611 TIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPILICSKNIRYPFA 670

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           RF  + +  + +++  E+  +  + +   +
Sbjct: 671 RFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700


>UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C3B57
          Length = 720

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/659 (42%), Positives = 412/659 (62%), Gaps = 22/659 (3%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
           + ++PLP  +LD+L  FNI+ ++++LLV +  ++ LEF+ FP++LL  TL RLALNVA+T
Sbjct: 42  IFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQPLEFSTFPSLLLLLTLFRLALNVATT 101

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           R++L+ G      AG +VEAFG F+VGG+  +G+V+F+IL++I F+VITKGAGR++EV A
Sbjct: 102 RLVLLNGD-----AGTIVEAFGKFVVGGSLIVGLVIFLILIVIQFVVITKGAGRVSEVAA 156

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD +PGKQMAIDA++NAG+I E EAK+RR+ + +E++FYG+MDGAS+FVRGDA+A I
Sbjct: 157 RFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLMRESEFYGTMDGASRFVRGDAVAAI 216

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I  IN+ GG ++G L  GM +  A   Y++LTIGDGLV QIPAL+ +TA+ ++VT+ ++
Sbjct: 217 IITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIGDGLVTQIPALITATASAMLVTKATS 275

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333
              +GE++  Q  +      L+A +L  L LVPGMP L FL     LL L+     R  +
Sbjct: 276 GTSLGEELGGQFSAASGPFRLAAFILIALALVPGMPMLPFLALGVALLLLSR----RMSR 331

Query: 334 APAEPK----------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383
            P  P               A + + VE   +D    D + +E+G  LIPMV  ++   L
Sbjct: 332 VPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRVSLEIGAALIPMVSARRGPGL 391

Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443
           + RI  +R+  A++ G   P V +RDN+ L P  YRIL+ G E+  GD  P  WLAI+PG
Sbjct: 392 IDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLGGREVARGDVRPDLWLAIDPG 451

Query: 444 TAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
            AA   L GE   +PAFGL A WI  A + +A+  G+TVV++  V+ THL  ++ +HA E
Sbjct: 452 GAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVVDSPNVIITHLGEVVRRHAGE 511

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
           L GR + + ++DRV +  P + +DL+P VV++  LH+VL  LLDE+VPI ++  ILE+LA
Sbjct: 512 LLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLTQLLDERVPISNLPRILESLA 571

Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-GLE 621
            HAP   DP EL   VRV LGRA+  ++      +  I LD  LE  L +A+Q     ++
Sbjct: 572 AHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVLDPRLELDLKRAVQNNQLIID 631

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
           P   ++L  +    L +    G    LL +  LR  L   L R+L  L V+S  E+  +
Sbjct: 632 PSRLEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRHSLARALHDLSVVSYQEIPTD 690


>UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria
           RepID=C4Z5H9_EUBE2
          Length = 679

 Score =  470 bits (1210), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 263/671 (39%), Positives = 426/671 (63%), Gaps = 22/671 (3%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I +L  +   ++ +P+++LD+L   NI ++++VL  ++F +  L+ A+FPT+LLFTT+ R
Sbjct: 12  IYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTMLLFTTIFR 71

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           ++LNV+ST++IL  G+     AGKVV+ FG F+  GN  IGI++F+IL+II F+VI KG+
Sbjct: 72  ISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQFIVINKGS 126

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE  F+GSMDGA+K+V
Sbjct: 127 ERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGSMDGATKYV 186

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDA AG++I  IN++GG+++G+   G+++  A   YT+LTIGDGL +QIP+L+IS A G
Sbjct: 187 KGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPSLLISLATG 246

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           V+VT+ S++ ++G++++ QLFS   V+L+  A L LLG+   +P  +F+      LG+A 
Sbjct: 247 VLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFI-----PLGMAL 301

Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEAT-----WNDVQL--EDSLGMEVGYRLIPMVDFQ 378
            I GR+  A A    ++ +      EA+      N V L   D + +E GY +IP+ D  
Sbjct: 302 IIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLADVN 361

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           Q G+LL R+  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+     ++
Sbjct: 362 QGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFDHYM 421

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A+NPG     + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL  +I Q
Sbjct: 422 AMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRQ 481

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           H AEL  RQ+ Q L++ +      L E+LVP ++ +  + KVLQNLL+E + IRD+ TI 
Sbjct: 482 HIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLVTIF 541

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           ETLA+HA +  DP  LT  VR AL RAI+ ++F   +  +V+ +D  +E+ ++ +++   
Sbjct: 542 ETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVKNTE 601

Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
                 L+P  + +++      L + E +G  P+++ +  +R       +     ++V+S
Sbjct: 602 QGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDIIVIS 661

Query: 674 NLELSDNRHIR 684
             E+  N  ++
Sbjct: 662 YNEVESNVELQ 672


>UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria
           RepID=FLHA_CAUCR
          Length = 700

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 278/663 (41%), Positives = 413/663 (62%), Gaps = 12/663 (1%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           I+ ++++P+PA +LD+L   ++  S+++L+ A+  ++ LEF +FPT+LL TTL RL LN+
Sbjct: 36  IIVLLIIPVPAPLLDVLLAISLTGSVLILMTAILIKKPLEFTSFPTVLLVTTLFRLGLNI 95

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150
           ASTR+IL  G  G   AG V+EAFGH ++ GNF IG++VF+IL+++NFMV+TKG+GRIAE
Sbjct: 96  ASTRLILSHGQEGTGGAGAVIEAFGHLMMQGNFVIGVIVFIILIVVNFMVVTKGSGRIAE 155

Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210
           V ARF LD MPGKQMAIDADL+ GLI +DEAK RR E+ QE+ F+G+MDGASKFV+GDAI
Sbjct: 156 VAARFTLDSMPGKQMAIDADLSTGLISQDEAKIRRKELEQESTFFGAMDGASKFVKGDAI 215

Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270
           AG++I  INI+GG+++GV+QH M  G AA +YT++TIGDGLV+QIPAL+IS AAG++V++
Sbjct: 216 AGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQIPALIISIAAGMVVSK 275

Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330
              +    + +  QL  NP  + + +A  G++ L+PGMP   F         LA+  R +
Sbjct: 276 AGVEGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAMALAAGALAYK-RVQ 334

Query: 331 EQKAPA--EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388
           + K P   +P  ++ A  +   E   +     D + +E+GY L+ +++     +L  +IR
Sbjct: 335 DAKKPKALDPADLEAAAPSEPEEEPISASLAIDDVKIELGYGLLTLINDLDGRKLTDQIR 394

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
           ++RK  A E GF+ P V I DNM L    Y I +K +E G+G+   G  + ++P      
Sbjct: 395 ALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEVRLGCLMCMDPRGGQVE 454

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           LPGE   +PAFGL A WI   L+E+A  +GYTVV+ +TV+ THL  ++ ++ A+L    E
Sbjct: 455 LPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLTTHLTEILKENMADLLSYAE 514

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
            Q+LL  + +   KL +DL+PG VT TT+ +VLQ+LL E+V IRD+  ILE + E AP  
Sbjct: 515 VQKLLKELPETQKKLVDDLIPGTVTATTVQRVLQSLLRERVSIRDLPQILEGVGEAAPHT 574

Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDE--VHVIGLDTPLERLLLQALQGGG-----GLE 621
           +   +L   VR  L R +   W    D+  + +I L    E+   +AL G G      L 
Sbjct: 575 ASVTQLVEQVRARLARQLC--WANRGDDGALPIITLSADWEQAFAEALIGPGDDKQLALP 632

Query: 622 PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNR 681
           P      +   +++  R  + G  PVLL +  +RP +   + R   Q VV+S  E+    
Sbjct: 633 PSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRPYVRSIIERFRGQTVVMSQNEIHPRA 692

Query: 682 HIR 684
            ++
Sbjct: 693 RLK 695


>UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira
           RepID=Q04SD6_LEPBJ
          Length = 705

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/657 (40%), Positives = 397/657 (60%), Gaps = 29/657 (4%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           I++M+V+PLP  ILD+L   ++A+ ++VLL ++      +F+ FP++LL TTL RLALNV
Sbjct: 20  IVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIFPSLLLITTLYRLALNV 79

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVVFVILVIINFMVITKGA 145
           ++TR IL +G    A    V++AFG F++G       + +G ++F+ILV++  +VITKGA
Sbjct: 80  STTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFIIFIILVLVQILVITKGA 136

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR  +  E DFYGSMDGASKFV
Sbjct: 137 TRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIEAEVDFYGSMDGASKFV 196

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GD  AG++I  IN++GG+++G    G S   A E+Y   TIGDGLV+QIPAL+ + A G
Sbjct: 197 QGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGDGLVSQIPALLTTVATG 256

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +IVTR  ++ D+  Q  +QLFSN  V+ + A  LG    +PG+P +  ++ +AG+  L +
Sbjct: 257 IIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLPFIPLVILSAGIAYLGY 316

Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLIPMVDFQQDGE 382
            +   EQ    + + ++  E  +  +    D   E   D + +EVGY LIP+VD  Q G 
Sbjct: 317 SL---EQTVKEQLESIEKKEKESGQDRKPKDFYEELRTDPIEIEVGYHLIPLVDTSQGGA 373

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN- 441
           LL +I ++RKKFAQ+ G + P V I DN+DL P  Y I + G E+G     P + +A+N 
Sbjct: 374 LLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGISTVKPDKLMALNT 433

Query: 442 -PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
            PGTA  ++ GE  ++P+FG  A WI S  K +A+ +GYTVV+ASTVV THL  L++ HA
Sbjct: 434 SPGTAE-SIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVVVTHLKELLATHA 492

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDL---VPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           + L GR+E ++LLD      P L  +L    PG   L  + +VLQNLL E + IR++  I
Sbjct: 493 STLLGREEVKKLLDHYKTSYPTLIGELDADKPG--NLGIIQQVLQNLLREGLGIRNLVPI 550

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP-LERLLLQALQG 616
           LE++A +     +P+ LT +VR ++ R + + +     ++ VI L++  L+RL     Q 
Sbjct: 551 LESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRILDRLNKSITQD 610

Query: 617 GG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
                    L P    +L+    E      M G  P+ +VN  +R   S  L +  P
Sbjct: 611 RIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSYLLAKEFP 667


>UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=A9KND9_CLOPH
          Length = 677

 Score =  468 bits (1204), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/655 (38%), Positives = 410/655 (62%), Gaps = 12/655 (1%)

Query: 37  LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96
           +P+PA +LD L   NI++S+++L  A+F+Q  L  + FPTILLFTT+ R++LNV+ST++I
Sbjct: 21  VPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTILLFTTVFRISLNVSSTKLI 80

Query: 97  LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156
           L  G+ GA     VV  FG F+   +  IG++VF+IL+II F+VI KG+ R++EV ARF 
Sbjct: 81  LSSGNPGA-----VVTQFGRFVGQDDVIIGVIVFIILIIIQFIVINKGSERVSEVTARFT 135

Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216
           LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+MDGA+K+V+GDA+AG++I 
Sbjct: 136 LDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGATKYVKGDAVAGLIIT 195

Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD 276
           V+N++GG ++G+++ G+  G A   Y +LTIGDGLV+QIP+L+IS A G++VT+VS + D
Sbjct: 196 VVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISLATGIVVTKVSKEAD 255

Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336
           +G+ ++ QLFS P V+ +    L  LG+V  +P +VF  + A  +     I  R + A  
Sbjct: 256 IGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIFCGRVIDKRVKIASI 315

Query: 337 EPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394
           E +     ++   +    N V L   D + +E GY +IP+ D  Q G+LL R+  IR++ 
Sbjct: 316 EEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVNQGGDLLDRVVLIRRQI 375

Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454
           A E+G + P + +RDN+ L P +Y I +KG+ +  G+     ++A+NPG     + G  T
Sbjct: 376 ALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYMAMNPGYVEEEITGIPT 435

Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514
            +P+F L A+WI  + +E+A+  GYTVV+  +++ATHL  +I  H  EL  RQ+ Q L+ 
Sbjct: 436 FEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRGHLDELLTRQDVQNLIT 495

Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574
            + +    L  +LVP ++ +  + KVLQNLL E + IRD+ TI ETLA++AP   D   L
Sbjct: 496 NITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIFETLADYAPTTRDTDVL 555

Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGG-GLEPGLADRLL 629
           T  VR +L RAI+ ++F   +   V+ LD  +E+ ++    Q  QG    ++P     ++
Sbjct: 556 TEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTEQGAFLAIDPEKTQSIM 615

Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
              ++ + + E LG  P+++ +  +R    +  +     L+V+S  E+  N  ++
Sbjct: 616 KSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLIVISYNEIESNVELQ 670


>UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes
           RepID=FLHA_BACSU
          Length = 677

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 300/678 (44%), Positives = 441/678 (65%), Gaps = 36/678 (5%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I ++LI++M+V+P P ++L +L   NI+L+++VLL  M  Q  L+F+ FP++LL  TL R
Sbjct: 10  ISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSLLLLLTLFR 69

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L LNV++TR IL  G       GKVVE FG+F+VGGN  +G+VVF+IL+II F+VITKGA
Sbjct: 70  LGLNVSTTRSILSHGE-----GGKVVETFGNFVVGGNVLVGLVVFIILIIIQFIVITKGA 124

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+MDGASKFV
Sbjct: 125 ERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGAMDGASKFV 184

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAGI+I++INI+ G+++G+LQ GMS+  AA  +T+LT+GDG+V+QIPAL+ISTA G
Sbjct: 185 KGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPALLISTATG 244

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT---AGLLG 322
           ++VTR +++ ++G  +  QLF+ P ++ ++AA + LLG+       + +L T   AGLL 
Sbjct: 245 IVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIF----TPIGILLTGPLAGLLA 300

Query: 323 LAWWI--RGREQKAPAEPKPVKMAENNTVVEATWNDVQLE--DSLGMEVGYRLIPMVDFQ 378
              +   +  ++K   +    + AE +  +++  + VQL   D +  E GY LIP+ D  
Sbjct: 301 FGAYTLSKSGKEKEEVDEILEEEAEVDE-LKSPESVVQLLHIDPIEFEFGYGLIPLADAN 359

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           Q G+LL RI  IR++ A E+G + PVV IRDN+ LQP  YR+ +KG E+  G+     +L
Sbjct: 360 QGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYL 419

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A++P      + G  TV+P+FGL A WI  A+K++A + GYTVV+ ++VV+TH+   I Q
Sbjct: 420 AMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQ 479

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           HA EL GRQE +QL+D + +  P L E++ P  +++  + KVL  LL EKV IR++ TI 
Sbjct: 480 HAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIF 539

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL---LQALQ 615
           ETLA++  + +D   LT   R AL + IT Q+    + + V+     +E+ +   +Q  +
Sbjct: 540 ETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTE 599

Query: 616 GGG--GLEPGLAD---RLLAQTQEALS-RQE---MLGAPPVLLVNHALRPLLSRFLRRSL 666
            G    LEP +++   R +A+  E LS RQE   +L +PPV       R  + + L R  
Sbjct: 600 HGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPV-------RMYVKQLLERYF 652

Query: 667 PQLVVLSNLELSDNRHIR 684
           P L VLS  EL  N  ++
Sbjct: 653 PDLPVLSYNELEANVEVQ 670


>UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW37_ARCB4
          Length = 703

 Score =  457 bits (1175), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 276/690 (40%), Positives = 418/690 (60%), Gaps = 33/690 (4%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
           L L +L+++++PL    LD   + ++A+S ++LL++++ Q+  +   FPT++L   + RL
Sbjct: 18  LFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPADLTTFPTLILILVVFRL 77

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           AL++A+TR IL EGH G  A   ++ AFG F+VGGN  IGI++F+ILV+INFMV+TKGA 
Sbjct: 78  ALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIIIFIILVLINFMVVTKGAT 137

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR  +  EA+FYG+MDG+SKFV+
Sbjct: 138 RVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEANFYGAMDGSSKFVK 197

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDAIA I+I ++N+VGG+LVG+ QH +S+  A E+YT+LTIGDGLV+QIPAL++STA  +
Sbjct: 198 GDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLVSQIPALLLSTATAI 257

Query: 267 IVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL--GL 323
           I+TR +TD +    Q VNQL  +   ++L    L L  LVPG P   F+L T GLL  GL
Sbjct: 258 IITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPT--FILMTMGLLMGGL 315

Query: 324 AWWI----RG------REQKAPAEP---KPVKMAENNTVVEATWNDVQLEDSLGMEV--- 367
            + I    RG      R  K P      KP  + E      A      +E  + +EV   
Sbjct: 316 GYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQTIETIMKLEVLEL 375

Query: 368 --GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425
             G RL+ +V  Q + ELL +I++IRK  A E+GF+ P + I D+  L P  Y++ +K +
Sbjct: 376 KLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDDSYLSPNEYQLYLKRI 433

Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485
            +  G     ++LA+  GT    L G    +P F L+A WI   L+E+A ++G+TVV+A 
Sbjct: 434 PLVKGRIEVDKFLAMG-GTGNEKLQGIHVKEPVFNLDATWITGDLREEALMKGFTVVDAP 492

Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545
           T+++TH++ +I +HA ++  RQ+   +++R+ ++ P + E+ +  V +   L KV ++LL
Sbjct: 493 TIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAMK-VTSYGALLKVCKDLL 551

Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605
            EK+PI DM TI+E +A+ A     P  L   VR  L R ITQ++      +H+I +   
Sbjct: 552 HEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDTDGILHIITIKPD 611

Query: 606 LERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV-LLVNHALRPLLS 659
           +E+  +  LQ   G     L     + L+ +T++ L   EM G   V ++V+  LR  +S
Sbjct: 612 VEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFSKVCMVVDPVLRKRIS 671

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
               +   Q+ VLS+ EL    +  +  T+
Sbjct: 672 EIYEKFGLQIAVLSHAELDSKANFAIEGTL 701


>UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter
           RepID=C5EZ65_9HELI
          Length = 754

 Score =  451 bits (1159), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 290/713 (40%), Positives = 424/713 (59%), Gaps = 64/713 (8%)

Query: 37  LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96
           +PLP+ +LD     +IALS +++L+A++ ++  +F+AFPT+LL  TL RL+LN+A+TR+I
Sbjct: 42  VPLPSALLDFFLAISIALSALIILIALYVKKPTDFSAFPTLLLIVTLFRLSLNIATTRMI 101

Query: 97  LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156
           L  GH G  A   ++ AFG F+VGGN+ IGI++F+ILVIINFMV+T G+ R++EV ARF 
Sbjct: 102 LSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILFIILVIINFMVVTNGSTRVSEVKARFT 161

Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216
           LD MPGKQMAIDADLN GLIG++EAK RR E+  EADFYGSMDGA+KFV+GDAIAGI+I 
Sbjct: 162 LDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFYGSMDGANKFVKGDAIAGIIIT 221

Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD-Q 275
           +INI+GG L+GV Q  MS+  AA ++T+LTIGDGLV+Q+PAL++STA G+IVTR S + +
Sbjct: 222 LINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQLPALIVSTATGIIVTRFSKEGE 281

Query: 276 DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL------------GL 323
           +    +V+QL +    +++   +L L  LVPG+P  + L F   L             G 
Sbjct: 282 NFASGIVDQLINESKTLMIVGCILLLFALVPGLPT-ISLGFVGLLFLTLALLLNKQKDGE 340

Query: 324 AWWI---------RGREQKAPAEPKPVKMAENNTVVEATWNDVQ---------------- 358
           AW           +G+ ++  A P P +  +  +  +   N  Q                
Sbjct: 341 AWKYVESLFKKVRKGKAEEGQA-PLPQRQTQRASGGQTPQNAQQAAPKPQPQESEEERRK 399

Query: 359 -----LEDSLGMEV-----GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIR 408
                ++ +L +++     GY+LI   D  Q GEL+ +IR+IRK  A E G L P+VH+R
Sbjct: 400 REEAEIDKALKVKILRVGLGYQLIKFADPAQGGELVNKIRAIRKTMATEYGILVPMVHLR 459

Query: 409 DNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIE 467
           D+++L P  Y+IL+K +EIG G     ++LAI      G LP G  T +P FGL+A WI+
Sbjct: 460 DDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSGFVGELPDGIPTKEPVFGLDAYWID 519

Query: 468 SALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL 527
              KE A I+GYT+++ +TV++TH+  LI Q+A EL  RQE   L+ ++ Q+ P L E++
Sbjct: 520 EDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEELLTRQEVANLVAKLGQDYPILAEEI 579

Query: 528 VPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAI 586
               V + T+  +L+ LL E++PI+DM +I E +A+  P  ++D   L+  VR  L R I
Sbjct: 580 KG--VGIGTIQHILKELLHEQIPIKDMLSIAEAIADGYPAYKADLPTLSEYVRACLKRLI 637

Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGGG----LEPGLADRLLAQTQEALSRQE 640
           T  +      +    L   LE+ LL+ L  Q   G    L P  +  LL     A  +  
Sbjct: 638 THNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQRLRLSPTESQSLLDAINVAYQKGV 697

Query: 641 MLGAPPVLL--VNHALRPLLSRFLRRS--LPQLVVLSNLELSDNRHIRMTATI 689
            +GA P ++  V   LR  L+ FL +      +VVLS  E+       +  +I
Sbjct: 698 SMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVLSTAEIDYQSKFEILGSI 750


>UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus
           F0268 RepID=C2KYZ6_9FIRM
          Length = 718

 Score =  447 bits (1150), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/680 (35%), Positives = 400/680 (58%), Gaps = 45/680 (6%)

Query: 43  ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102
           ++D+    N+A+S+M+L++ M  +  LE + FP++LL TTL RL +NV++TR IL    T
Sbjct: 29  MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNIL----T 84

Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162
              ++G +++AFG F+V GN  +G+++++I+V++ F+VITKGA R++EV ARF LD MPG
Sbjct: 85  NGGSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144

Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222
           KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD +  ++   IN+VG
Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204

Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282
           G ++G++Q G  +     +Y++ T+GDGLV QIP+L+IS + G+IVTR  ++  + E + 
Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR------------ 330
            Q    P  M+++   +G+L L+PGMP L  L    G +   +++  R            
Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324

Query: 331 -----EQKAPAEPK---------PVKMAENN-TVVEATWNDVQLEDSLGMEVGYRLIPMV 375
                  +AP +P+         P +  E+    V   +N +Q+E  + M+ GY LIP+ 
Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVE-PIEMDFGYSLIPLA 383

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGF-LPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           D    G L+ RI   R+++AQ++GF +P  + +RD+  L    Y I +KG EI  G+   
Sbjct: 384 DESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILT 443

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
              LA+ P      + G  T++PA+G+ + WI    +E+A++ GYTV++  +V+ +HL+ 
Sbjct: 444 DYVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSE 503

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
            I +HA EL  RQE  +L++ + +  P+L E+  PGV++   L KVL  LL E V I+D+
Sbjct: 504 TIKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDL 563

Query: 555 RTILETLAEHA-----PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609
            TI+ET+ E       P++ D  ++   VR +L R IT+ +    + + VI LD  LER 
Sbjct: 564 ETIVETMFECISETGLPVK-DTDQIVEKVRASLKRTITRMYCEDGN-MKVITLDAGLERT 621

Query: 610 LLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664
           ++ +L  G       L P L   L+ Q  E   +   L +PP++L +  +R      + +
Sbjct: 622 MVNSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQ 681

Query: 665 SLPQLVVLSNLELSDNRHIR 684
             P + VLS  E++ N  I+
Sbjct: 682 FYPNVRVLSFNEVASNVQIQ 701


>UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms
           RepID=FLHA_BRUME
          Length = 723

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/676 (38%), Positives = 411/676 (60%), Gaps = 20/676 (2%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           I++IL+++ LP+PA +LD+   F+IA S+++L+VA++ QR L+F+AFPT+LL  T++RL+
Sbjct: 53  IIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWIQRPLDFSAFPTVLLIATMMRLS 112

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LN+A+TR+IL  G+ G  AAG V+  F  F++GG+F IG+VVF IL+I+NF+VITKGA R
Sbjct: 113 LNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVIGLVVFAILIIVNFLVITKGATR 172

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           IAEVGARF LD +PGKQMAIDADL++GLI E EA++RR E+ +E+ F+GSMDGASKFVRG
Sbjct: 173 IAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELEEESSFFGSMDGASKFVRG 232

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAG++I  +NI GG+++G  +HGM +  AA+ +T L++GDGLV QIPAL++S AAG++
Sbjct: 233 DAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLVTQIPALIVSLAAGLL 292

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL--LGLA- 324
           V++  T     + +  QL + P  +L++A +L +LG++PG+P   F L    +  +G+A 
Sbjct: 293 VSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFPFFLLGGAMAFVGIAV 352

Query: 325 --WWIRGREQKAPAEPKPVKMAENN--TVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
                R RE  A    K  + AE      V+A+    Q+E  LG ++  RLI   +    
Sbjct: 353 PRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLSARLIASQE---- 408

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
            EL  R+  +R+KFAQE GF+ P + + D++ L P  YRI + G  + S +   G  L +
Sbjct: 409 -ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGTAVASHELRVGEILVV 467

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
                  ++PGE   +PAFG+ A  +        + +GY  V+  +V+ THL+ ++  + 
Sbjct: 468 LGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNLSVLLTHLSEIVRNNL 527

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
           A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  VL+ LL E++ IR++  ILE 
Sbjct: 528 AQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLLAERISIRNLHLILEA 587

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-- 618
           +AE AP+   P  +   VR+ + + I          ++V+ L    + +  Q+L+     
Sbjct: 588 IAEIAPLVRRPEMIVEHVRMRMAQQICGD-LSDNGVLNVLRLGNRWDLVFHQSLKRDAKG 646

Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
                 ++P L ++   +   A+ +    G   VL+ +   RP +   + R    L VLS
Sbjct: 647 EIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARPYIRMIIERLFATLPVLS 706

Query: 674 NLELSDNRHIRMTATI 689
           ++E++    ++    I
Sbjct: 707 HVEIARGVEVKSLGAI 722


>UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular
           organisms RepID=Q2SEX4_HAHCH
          Length = 697

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 257/659 (38%), Positives = 391/659 (59%), Gaps = 15/659 (2%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           IL ++  P+P+ +LD+L   N +  +++LL+  F  + L F+ FP++LL  TL RL+LN+
Sbjct: 26  ILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLLLIATLFRLSLNI 85

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150
           A+TR+IL +G      AG+V+ A G ++VGGN+ IG+VVF+IL+++ ++V+T GA R+AE
Sbjct: 86  AATRLILSDGD-----AGEVINAIGTYVVGGNYVIGLVVFLILIVVQYVVVTNGAQRVAE 140

Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210
           V ARF LD MPGKQM+IDAD+N GLI E EA++RR  + +EA FYG+MDGASKFV+GDAI
Sbjct: 141 VAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAMDGASKFVKGDAI 200

Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270
           AGILI++I+I+GGL VG+ Q G+S G A  SYTLLT+GDG+V QIPALVISTA G+I+TR
Sbjct: 201 AGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPALVISTATGIIITR 260

Query: 271 VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330
            +TD  +G+++  Q+   P  +++    L  L L+PG+P L   +  + +  L  +   +
Sbjct: 261 AATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVASLMAALVVYAFKQ 320

Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390
            +   AE       +    +        LE SLG  +   L        +G L+  I+ +
Sbjct: 321 NKYQEAEDNVEDQEDAEKDIYEELKVEPLEISLGPSIAGYL-----GASEGALMDEIKRL 375

Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450
           RK+ A E+GF+ P V I          Y++ + G ++  G+ Y  R LAI+       LP
Sbjct: 376 RKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRILAISAQDLTDKLP 435

Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510
           G +  DP +GL A+WIE  LKE+A+    T+V+  TV+ TH+N  +   A  L  R E +
Sbjct: 436 GVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRLQAPALLTRSETE 495

Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSD 570
           +L+ RV      L E+LVP  +TL+ + KVLQ LL EKV IR++  I E L +   +  D
Sbjct: 496 KLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIAEALVDAGKVSKD 555

Query: 571 PHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL---LQALQGGGGL--EPGLA 625
             +L   VR  LG  I Q        +HV+ +D  +E+L+   ++  + G  L  +P L 
Sbjct: 556 HEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTEQGASLYVDPKLT 615

Query: 626 DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
           +++L+     + +   +G  PVL+ +  +R  + +   R LP L VL+  E+    +I+
Sbjct: 616 EQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLALTEVPVGMNIK 674


>UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia
           RepID=FLHA_BORBU
          Length = 697

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 408/676 (60%), Gaps = 23/676 (3%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++ +++  +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ FPT+LL  T+  L 
Sbjct: 27  LIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSVFPTLLLVMTIFGLV 86

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI----TK 143
           LN++STR+IL +G       G+++  FG F+VG +   G+V+  I+ II   V     TK
Sbjct: 87  LNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFIIFIIIIAVQFIVITK 143

Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203
           GA R+AEV ARF LD +PGKQMAID+  ++G + E+EA ++++++  E +FYG+MDGASK
Sbjct: 144 GATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQSEVNFYGAMDGASK 203

Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263
           FV G+   G LI +INI+GGLLVG+   G++   A  +Y  LT+GDGLV+Q+P+L+IST+
Sbjct: 204 FVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGDGLVSQLPSLLISTS 263

Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
            G+IVTR  +    G ++ +Q  ++  +  + +  L  L  +PG P L+ +  +  +  L
Sbjct: 264 TGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFPTLILMFLSLSIAFL 323

Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE-----DSLGMEVGYRLIPMVDFQ 378
           A+ + G  QK   + K +K+ E      + ++D  +      D L +E+GY L+P+VD  
Sbjct: 324 AYSLSGIRQKEEID-KKMKLEEEQA---SIYSDKDVSPVVPLDPLALEIGYNLVPIVDDT 379

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           +  ELL RI  IR++ A E G + P + I DNM L+P  Y   ++GVE+G G+   G++L
Sbjct: 380 KTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVGRGEIKLGKFL 439

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
            IN G  +G + G+   DP+FGL ++W+    +E A+  GYTVV+  +++ATH+  LI +
Sbjct: 440 VINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSIIATHMTELIKR 498

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           H+ E+  RQ+ Q  LD   ++   + E+++    ++  + +VLQ LL E+V IR++ TI 
Sbjct: 499 HSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQVSIRNLVTIF 557

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           ET+A+   I  D   L    R ++GR IT  +     E++VI L+   E++++ +     
Sbjct: 558 ETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQMIIDSRVESN 617

Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
                 ++P L  + + +  + ++  +  G  PV+L + + RP++     R +P LVV+S
Sbjct: 618 HDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITSREIPDLVVMS 677

Query: 674 NLELSDNRHIRMTATI 689
            LE+  N  + +  T+
Sbjct: 678 VLEVPQNIKVNVLKTV 693


>UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI
          Length = 579

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/569 (40%), Positives = 348/569 (61%), Gaps = 20/569 (3%)

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V  EA
Sbjct: 10  LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+TIGDGLV
Sbjct: 70  DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           AQIP+L++STAA +IVTRVS + D+   + NQL ++PSV+  +  ++ +L +VPGMP+L 
Sbjct: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189

Query: 313 FLLFTAGLLGLAWWIRGREQ-KAPAEPKPVKMAENNTVVEA-----TWNDVQLEDSLGME 366
           FLLF+A LLG   W   ++   A AE K ++     T+ E      +W  + L + + + 
Sbjct: 190 FLLFSA-LLGFTGWRMSKQPLAAEAEEKSLETL-TRTITETSEQQVSWETIPLIEPISLS 247

Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426
           +GY+L+ +VD  Q   L  RIR +R+  +   G L P + IR+N  L+P++Y I + G++
Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307

Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486
               D    + +A+      G + G    DPA+G+   WI++A K +A   GY V+++++
Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367

Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546
           V+ATH+N ++  +  +LF   +  QL +R++   P+L EDL    +  + L KV + LL 
Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426

Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606
           E V +RD+ TI   L   + +  D   L A VR+AL R+IT   F  K E+ V  L+  L
Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNEL 485

Query: 607 ERLLL----QALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           E LL     QA QGG        ++P + ++  +   +   + +  G  PVLLV   LRP
Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRM 685
           LL+R+ R   P L VLS  E+ D   +++
Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKI 574


>UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217
           RepID=Q12T85_SHEDO
          Length = 680

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/664 (35%), Positives = 383/664 (57%), Gaps = 19/664 (2%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++ IL ++ +P+PA +LD+L   NI+ ++++LL+  +++R L+F+  P++LL  TL RL 
Sbjct: 20  VIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVLLLATLFRLG 79

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LN+ASTR+IL +G+     AGKV+ A G ++V GN+ IG+V+F ILV++ F+V+T GA R
Sbjct: 80  LNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQFLVVTNGAQR 134

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           +AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+MDGA+KFV+G
Sbjct: 135 VAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAMDGATKFVKG 194

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIA I+I++INI+GGL +GV Q G+    A   YTL T+GDG+V QIP+L+I+   G+I
Sbjct: 195 DAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSLIIAVGTGII 254

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           +TR +T  ++ +Q+  Q+ ++P  + L A V+     +PG+P+L  +L         ++ 
Sbjct: 255 ITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGITFALFGYFA 314

Query: 328 RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387
             ++Q    E K  +  EN      T      E  L +    ++ P +   ++ E+  + 
Sbjct: 315 HKKKQLKLIE-KTFREFEN------TKKTSTQESLLQVAFSSQIWPQI-LAEETEIQRQF 366

Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447
              + +F  + G   P + ++    L+   Y I +  +E  SG  +P + + I+P     
Sbjct: 367 SRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMMVIDPQNKLD 426

Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507
              G A V+PA+GLNA+W+++   +  +  G TVVE  +V+ TH+   +  H+AE   RQ
Sbjct: 427 KKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKSHSAEFVTRQ 486

Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPI 567
              QL+    +    L  +++P  + +  + ++  +L+ EKV + +   I E LA+ A  
Sbjct: 487 FVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIFEVLADKARH 546

Query: 568 QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL----QALQGGGGLEPG 623
           + D   LT  VR  L   +T         +++I +   LER LL      +  G  + P 
Sbjct: 547 EKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVITKGLQISPT 606

Query: 624 LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
             D L+ Q    + +   LGA PVLLVN  +R  L + L R++P L V+S  E+    HI
Sbjct: 607 DLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISVNEVP--HHI 664

Query: 684 RMTA 687
           ++ +
Sbjct: 665 KLNS 668


>UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema
           RepID=FLHA_TREPA
          Length = 707

 Score =  387 bits (995), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/675 (37%), Positives = 385/675 (57%), Gaps = 33/675 (4%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  ILD L  FN+  ++++LL+ +F ++  +F+ FP++LL +T+  L LNV+STR+IL
Sbjct: 29  PLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLIL 88

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
                G   +G ++ AF  F+VGG+      IG  VF+IL+ +   VITKGA RIAEV A
Sbjct: 89  T---LGDRFSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIAVQAFVITKGATRIAEVAA 145

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD    K M+IDA+ NAG+I E+EA++R+ ++ +EADF+G+MDGASKFV G+   GI
Sbjct: 146 RFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGI 205

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
            I ++N++ GL+VGV+        A ++YT LTIGDGL+AQ+P+L++S A G IVTR S 
Sbjct: 206 FITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQLPSLLLSVATGFIVTRSSD 265

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN--LVFLLFTAGLLGLAWWIRGR- 330
               G+ +  Q   +  V  + +  L ++ ++PG P+  L F+      +GL    R R 
Sbjct: 266 QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRKRERV 325

Query: 331 -----EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385
                E +  ++ K ++  +++T   +    +   D L +E+GY LIP+VD ++  ELL 
Sbjct: 326 HVQEHEMQKSSDKKGMQQTQDST---SEMGPIVPLDPLSLELGYGLIPLVDKEKGAELLS 382

Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445
           RI  IRK  A ++G + P + I DNM L P+ Y   ++G+E+  G    G +LAI  G  
Sbjct: 383 RITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAIKSGQV 442

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
              +PGE T+DP FGL A+WI    +++A+  GYTVV  S ++ATHL  +I  +AA++ G
Sbjct: 443 TEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILG 502

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
           RQ  Q ++D + +E P + +D V     L  + KVLQ LL E+V IR+   I ETLA+ A
Sbjct: 503 RQNVQMIIDALRKEYPAVVDD-VTQKCPLGKIQKVLQGLLREQVSIRNTVAIFETLADFA 561

Query: 566 PIQSDPHE---LTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEP 622
              SD      L   VR  LGR I  Q+   ++ +HV+ LD+ LE  L + +        
Sbjct: 562 ST-SDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLETFLSEKIALTVDSLS 620

Query: 623 GLADRLLAQTQ--EAL------SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
            L   L  Q Q  +A+      +RQE  G  PVLL    +R  +         ++ V+S 
Sbjct: 621 ILTLSLDEQRQVLQAVRTVFVPTRQE--GYIPVLLTTDTIRSAMWNLFFSDRIEIAVMSY 678

Query: 675 LELSDNRHIRMTATI 689
            E+S +  I     +
Sbjct: 679 KEVSTDMRIETVGVV 693


>UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria
           RepID=Q1D9J0_MYXXD
          Length = 707

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/656 (37%), Positives = 369/656 (56%), Gaps = 33/656 (5%)

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
           +    L  + FPT+LL TT+ RLAL +++TR+IL+ G       G+VV AFG+F+V GNF
Sbjct: 58  YVPAALHLSVFPTLLLITTMFRLALTISTTRLILLTGD-----PGEVVVAFGNFVVQGNF 112

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
            +G ++F+ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK
Sbjct: 113 VVGAILFIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKK 172

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           +R ++ +E+  +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YT
Sbjct: 173 KRRDLERESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYT 232

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLG 300
           LLTIGDGLV  IPA+++ST AG+IVTRV+ +++   +G  M +QL + P  + ++A +L 
Sbjct: 233 LLTIGDGLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLI 292

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP----------VKMAENNTVV 350
           +LGLVPG+P + F L   G  GL  W   ++Q+   E +             MA      
Sbjct: 293 VLGLVPGLPKIPFFLLGIG-AGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPK 351

Query: 351 EATWNDVQL----EDSLGMEVGYRLIPMVDFQQD-GELLGR-IRSIRKKFAQEMGFLPPV 404
           EA   D +L       + +EV   L+P VD +QD G+ L   I  +R     E+G   P 
Sbjct: 352 EALNPDSELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPG 411

Query: 405 VHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLN 462
           V  R N  L P  Y+I +  V + +G A  G  L  +         + G   V+PA    
Sbjct: 412 VRARGNGSLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQP 471

Query: 463 AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPK 522
           A W+    ++  +  G T  +    +  H   ++ ++A E  G QE Q +L+++ +  P 
Sbjct: 472 AAWVPEQYRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPA 531

Query: 523 LTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVAL 582
           + +++VP VV +  L  +LQ L++E++ IRD+R IL+ LAE+  +++D   LT  VR A 
Sbjct: 532 IVKEVVPKVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQ 591

Query: 583 GRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQGGG--GLEPGLADRLLAQTQEALS 637
            R I+ ++  G   + V  LD  +E   R  ++    G    LEP LA  ++   +    
Sbjct: 592 RRYISHKYARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECG 651

Query: 638 RQEMLGAPPVLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692
                   PV+L    +R  + + L     P   VLS  ELS   +I+  A I  +
Sbjct: 652 HLPPSAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707


>UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira
           RepID=C0QXX5_BRAHW
          Length = 703

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/699 (34%), Positives = 395/699 (56%), Gaps = 24/699 (3%)

Query: 8   LRLPANL-KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
           ++LPANL + +      G +++++   M+++PLP+ ILD L   NI +S+++LL+ +  +
Sbjct: 11  IKLPANLSRHSDIMFAIGAVMVIM---MLIIPLPSLILDFLLIINIIVSLLILLMVLSIR 67

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
              +F+ FP++LL  T  RLALNV++TR IL EG   A   GKV+ +F  F+VGGN  +G
Sbjct: 68  SANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGGNIVVG 124

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
           +V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA+++R 
Sbjct: 125 VVIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRK 184

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
           ++  E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+   G     A  +YT  T
Sbjct: 185 KIRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFT 244

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306
           +GDGLV+QIP+  +S A G++VTR S++ ++  Q+  Q+F+ P  + + A     L L+P
Sbjct: 245 VGDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLP 304

Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLG 364
           G P +   +    L    + ++  +Q+        K      V +   +       + + 
Sbjct: 305 GFPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLKVEKIE 364

Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
           + VG  LIP+    + G+L+ RI  IR++ A E+G + P V I DN  ++P  Y + + G
Sbjct: 365 LSVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSING 424

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
            E+  G   P   LA+N  +  G  P  E   +PAFGL A WI+   K+ A+ +G+ + +
Sbjct: 425 TEMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQ 484

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV----VTLTTLHK 539
            ++V+ATH +  I ++A  L GR+E Q +LD +  +   L  +++         L  + K
Sbjct: 485 PTSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQK 544

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VLQNLL E+VPIR+   ILE +A+   I     + T +VR  L   I+Q        + V
Sbjct: 545 VLQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQDRNIRV 603

Query: 600 IGLDTPLERLLLQALQGGGGLEPGL--------ADRLLAQTQEALSRQEMLGAPP-VLLV 650
           I L   L+  + Q L   G L+              L+   ++A+      G    V L 
Sbjct: 604 ITLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDDIVFLT 663

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +R  L +F+ +++ +  V++  E++   +++  A+I
Sbjct: 664 SPIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702


>UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales
           RepID=A8LMR6_DINSH
          Length = 698

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/668 (36%), Positives = 380/668 (56%), Gaps = 20/668 (2%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I++L I+ MM+LP+P+ +LD+    + +LSI++  V +F  R L+F+AFPT+LL + +LR
Sbjct: 21  IMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFSAFPTVLLASLMLR 80

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+LNV+ST++I+ +GH G  AAG V+E F +F++GG+  +G+VVF++L+I+NF+VITKGA
Sbjct: 81  LSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLVLLIVNFIVITKGA 140

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEVGARF LDGMPGKQ+AIDAD++AG I   EAK+RR     E  F+GS+DGASKFV
Sbjct: 141 SRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFGSLDGASKFV 200

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDA+AG+LI  +N++ GL++G+  H M +G A  +Y++LT+GDGLV QIPA++IS AA 
Sbjct: 201 KGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIPAVIISIAAA 260

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           +++ +  +D+     +  Q   +P+ +     ++ L  L+PG+P + F L    L G A 
Sbjct: 261 LLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLGAMVLGGAAL 320

Query: 326 WIRGREQKAP-AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384
           ++  +   +P  E KP   A+ +   EAT  D+   D + +     L+  +     G L 
Sbjct: 321 YLYRKTPDSPEGEDKPA--AQTDRPREATMGDILDVDEIHVTFSTDLVSSI-LDAAGGLD 377

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
            RI+S+R   A E G + P + + D+  L  A Y I + GVE   G  YP R L + P  
Sbjct: 378 TRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQLYPDRILLLLPEE 437

Query: 445 AAGTLPGEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
                P E  V +P +G  A WIE + +++  + G T V ++ V+ATHL  ++  + A L
Sbjct: 438 GFRE-PTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHLLEVVKGNLARL 496

Query: 504 FGRQEAQQLL-------DRVAQEMPK-LTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
              +  ++L+       D    E  + L E+L+P  VT  TL  +L+ LL+E+V IR++ 
Sbjct: 497 MTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLLLEERVSIRNLP 556

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
            ILE +AE   I S    +   VR  L   I          + +I L    E++      
Sbjct: 557 LILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQEWEQIFAANSI 616

Query: 616 GGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
           G         L P L  +L+    E + +    G  P ++ +   R  LS  L     Q+
Sbjct: 617 GREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFLSTVLASKGLQV 676

Query: 670 VVLSNLEL 677
            VLS  EL
Sbjct: 677 PVLSFEEL 684


>UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria
           RepID=LCRD_YERE8
          Length = 704

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/691 (34%), Positives = 394/691 (57%), Gaps = 47/691 (6%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           +L+L ++ MMVLPLP  +LD+L   N+ +S+++L++A++    L+F+AFP +LL TTL R
Sbjct: 22  VLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFR 81

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           LAL+V++TR+IL++     A AG++V  FG+F+VGGN  +GIV+F+I+ I+ F+VITKG+
Sbjct: 82  LALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIITIVQFLVITKGS 136

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LD MPGKQM+ID D+ AG+I  +EA++RR+ + +E+  +GSMDGA KFV
Sbjct: 137 ERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQMFGSMDGAMKFV 196

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAG++I+ +NI+GG+ +GV Q G++   A + Y++LT+GDG+V+Q+PAL+I+  AG
Sbjct: 197 KGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQVPALLIAITAG 256

Query: 266 VIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           +IVTRVS++   D+G  +  Q+ + P  ML+   +L L GL+PG P + FL+  A L+G 
Sbjct: 257 IIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVTFLIL-ALLVGC 315

Query: 324 AWWIRGREQK------------------APAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365
             ++  R+Q                   APA     K +  N         +  +++  M
Sbjct: 316 GGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANK------GRLGEQEAFAM 369

Query: 366 EVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            V   LI +   QQ+      L   +  +R+    ++G   P +H+R N  +    Y I 
Sbjct: 370 TVPL-LIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEGEYLIS 428

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTL---PGEATVDPAFGLNAIWIESALKEQAQIQG 478
           ++ V +  G+   G +L +    +   L   P E            W+    +E+ +   
Sbjct: 429 LQEVPVARGELKAG-YLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERLEKSQ 487

Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLH 538
                 S V+  HL+H++ ++A +  G QE + LL+++     +L ++ V  +V L  + 
Sbjct: 488 LEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPLQRMT 546

Query: 539 KVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVH 598
           ++LQ L+ E + IR+MR+ILE + E    + D  +LT  +R +L R I  ++  G + + 
Sbjct: 547 EILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILP 606

Query: 599 VIGLDTPLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653
               D  +E  +  A+ Q   G    L+P + + LL Q ++ +     + + PVL+V+  
Sbjct: 607 AYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMD 666

Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
           +R  + + +      L VLS  EL+   +I+
Sbjct: 667 IRRYVRKLIESEYYGLPVLSYQELTQQINIQ 697


>UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria
           RepID=Q0C5I9_HYPNA
          Length = 692

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/549 (40%), Positives = 341/549 (62%), Gaps = 15/549 (2%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           ++ I+ +MVLP+PA++LD+  T + ALSI++    +F ++ L+F++FP+ILL + +LRLA
Sbjct: 20  LMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASLVLRLA 79

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           LNV+ST++I+ EGHTG  AAG V+E F  F++GGN  +G+VVF +LVI+NFMVITKGAGR
Sbjct: 80  LNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVITKGAGR 139

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           +AEVGARF LD MPGKQ+AID+DL  G I  +EAK RR    +EA F GS+DGASKFV+G
Sbjct: 140 MAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGASKFVKG 199

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAG+LI  +N++ G+  GV+ H +S+  A  +Y++LT+GDGLV+QIPA+++S AA ++
Sbjct: 200 DAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSVAAALL 259

Query: 268 VTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
           +++   +  +   +  QL  N + + + A +L +  L+PG+P L F+   AG   +A++ 
Sbjct: 260 LSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAAVAYFT 319

Query: 328 R--GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385
           +    E+ A  E KP   A     +     D    D + +EV   L+ MV   ++G    
Sbjct: 320 KKAADEKAASEETKPEDAAPKAPKI----GDSIYADEIHLEVAPDLVNMVLVGENG-FES 374

Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445
           RI  IR+  A+E GF+ P + + DN  L+   YR+ ++GV + SG   PG+ LA+     
Sbjct: 375 RIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIEENQ 434

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
              L GE   +P +   A W+ SA K++       VVE   V+ATH+  +I  + + +F 
Sbjct: 435 LPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSLVFT 494

Query: 506 RQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           R    + LD +        A    +  ++ +PG VT   L  VL+ LL E+VPIR++  I
Sbjct: 495 RMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNLFLI 554

Query: 558 LETLAEHAP 566
           +ET+AE  P
Sbjct: 555 IETVAEAKP 563


>UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria
           RepID=HRPI_ERWAM
          Length = 715

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 247/696 (35%), Positives = 386/696 (55%), Gaps = 71/696 (10%)

Query: 24  GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83
           G  +++ I+ MM++PLP  ++D+L   NI +S +++++AM+  + L F+ FP++LL TT+
Sbjct: 23  GAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSVLLLTTM 82

Query: 84  LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143
            RLAL++++TR IL++       AG +VEAFG+F+VGGN A+G+V+F+IL ++NF+VITK
Sbjct: 83  FRLALSISTTRQILLQQD-----AGHIVEAFGNFVVGGNLAVGLVIFLILTVVNFLVITK 137

Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203
           G+ R+AEV ARF LD MPGKQM+ID+DL AGLI   +A++RR  + +E+  +G+MDGA K
Sbjct: 138 GSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMK 197

Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263
           FV+GDAIAG++I+ IN++GG  +GVLQ+GM  G A   Y++LTIGDGL+AQIPAL+IS  
Sbjct: 198 FVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIAQIPALLISLT 257

Query: 264 AGVIVTRVST-----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLG--LVPGMPNLVFLLF 316
           AG+I+TRVS      D ++G ++  QL S P   ++SAA  G+LG  L+PGMP  VF++ 
Sbjct: 258 AGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAA--GMLGFALLPGMPTAVFVII 315

Query: 317 TAGLLGLA----WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
           +A  LG      W I+ ++ +  A+             E     +  ED+ G +   R  
Sbjct: 316 SAIALGSGLFQLWRIKQQDSQQQAD-------------ELHAQQLAPEDN-GYQDLRRFN 361

Query: 373 P----MVDFQQDG-------ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
           P    ++ F Q+         L+  IR +R +     GF  P   I  +  L    +R  
Sbjct: 362 PTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFC 421

Query: 422 MKGVEIGSGDAYPGRWLAINP---------GTAAGTL-PGEATVDPAFGLNAIWI--ESA 469
           +  + + +   +    LA+           G + G + PG+A  D     +  W+  +  
Sbjct: 422 VYEIPLVTA-TFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCWLPPQHP 477

Query: 470 LKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP 529
           L +Q   + +    A  ++   +   I Q  A+  G QE++ +L+ +  E P+L ++L  
Sbjct: 478 LLQQEDRRCWN---AQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQEL-Q 533

Query: 530 GVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQ 589
            ++ L+    VLQ L  E++P+R +RTI ETL EH   + D   LT  VR+AL   I  Q
Sbjct: 534 RIMPLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQ 593

Query: 590 WFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGA 644
            +   + ++V  L    E LL  +L+         L       LL Q + A    +   A
Sbjct: 594 -YQQPNGLNVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHA 652

Query: 645 PPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
             ++LV   LR  L   L+     + VLS  EL+ N
Sbjct: 653 --LILVAQDLRSPLRALLKDEFHAVPVLSFAELTSN 686


>UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans
           PD1222 RepID=A1B5C1_PARDP
          Length = 694

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/687 (36%), Positives = 375/687 (54%), Gaps = 36/687 (5%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           +L+L++LSM V+P+ A +LDL    +IA + ++L++A   ++  +F AFP +LL + L+R
Sbjct: 21  VLLLIVLSM-VIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVSLLIR 79

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+LN++STR+IL  G  GA AAG V+EAF  F+ GG+  +G+ VF ++ ++NFMVITKG+
Sbjct: 80  LSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVITKGS 139

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
           GR+AEV ARF LD +PGKQ+AID DLN+G I  DEAK+RR+   +E  F+GS+DGASKFV
Sbjct: 140 GRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGASKFV 199

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAG++I +IN+  GL  GV+ HGM +  A  +Y+ LTIGDGLV+QIPAL+ S AA 
Sbjct: 200 KGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITSMAAA 259

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           ++++R    +   + +  Q  SN  V  + A  +  +GLVPGMP LVF    A L   AW
Sbjct: 260 LLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLGVAAW 319

Query: 326 WIRGREQKA-PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-----PMVDFQQ 379
           +IR R+ K  P +  PV+ +      +    DV   D + +E+G  LI     P+    Q
Sbjct: 320 FIRARQDKTRPEDAAPVE-SHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRGLGQ 378

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
                 RI ++R   A+  G + P V I D    Q   Y + ++GV  G G   P   LA
Sbjct: 379 ------RITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLA 432

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +        L GE   +P +G  A WI    +++A I G TVV    V++THL  ++  +
Sbjct: 433 LGAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTN 492

Query: 500 AAELFGRQEAQQLL--------DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
              L      Q+++        +  AQ   +  + +VP  V    L  VL+ LL+E++ +
Sbjct: 493 LPALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISV 552

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL----DTPLE 607
           R++  I + + E A   + P  +   VR  L   IT+Q+      + ++ L    +  + 
Sbjct: 553 RNLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIA 611

Query: 608 RLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPP----VLLVNHALRPLLSRFLR 663
           R   ++ + G G  P +  RL    Q  LS     G PP    VL V    R L+   L 
Sbjct: 612 RSEAESARAGNGAIPQIQKRLADALQATLS-----GLPPGIEVVLAVPDHRRRLVRMMLS 666

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIG 690
            +     VL   E+     +R+  T+G
Sbjct: 667 SAGIATPVLGLDEIDPGAQVRLRGTVG 693


>UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria
           RepID=A9L223_SHEB9
          Length = 685

 Score =  366 bits (940), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 233/675 (34%), Positives = 398/675 (58%), Gaps = 36/675 (5%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
           ++++ + MM+LPLP  ++D+L   N+ LSI++L++A++ +  LEF+ FP++LL TTL RL
Sbjct: 22  MLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVFPSLLLITTLYRL 81

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           AL ++++R+IL++       AG +V  FG+F+VGGN A+GI++F I+ I+ F+VITKG+ 
Sbjct: 82  ALTISTSRLILLQHD-----AGDIVYTFGNFVVGGNLAVGIIIFAIITIVQFIVITKGSE 136

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK++R++V +E+  YG+MDGA KFV+
Sbjct: 137 RVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLYGAMDGAMKFVK 196

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDAIA I++++ NI+GG+ VGV+QH MS   A  +Y +L++GDGL+AQIP+L+IS  AG+
Sbjct: 197 GDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQIPSLLISVTAGL 256

Query: 267 IVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
           IVTRV  +  Q++  ++V Q+   P+ + ++  V+ +  L+PG P LVF    + +LG +
Sbjct: 257 IVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVFGTLGSVVLGAS 316

Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF-QQDGEL 383
            W++ ++++A A+       E +   +A  +D    D++        +P++ +   D  +
Sbjct: 317 LWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGA----VPLILYLGADVPI 366

Query: 384 LG---RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
            G    ++ +R ++ +++G   P + ++           +L+    +      P   L I
Sbjct: 367 HGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQLVPQEALLI 426

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
           +   +  T+P      P       WI+    EQA+ QG  V     + A  +  +I ++A
Sbjct: 427 D---SIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRYA 483

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
            E  G QE + L+D +     +L ++L   ++++  + ++LQ L++E + +RD+RTI ET
Sbjct: 484 GEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVRDLRTIFET 542

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGG 619
           L E  P + D   LT  VR+AL R I +++   +  + V+ +   +E ++ +++ Q   G
Sbjct: 543 LVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAG 602

Query: 620 LEPGLADRLLAQTQEALSR-QEMLGAPP----VLLVNHALRPLLSRFLRRSLPQLVVLSN 674
               L    +AQTQ+ L+  QE L  PP    VLL +  +R  L + + R L    VLS 
Sbjct: 603 SYSALD---MAQTQQILTCIQEQL--PPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSF 657

Query: 675 LELSDNRHIRMTATI 689
            EL D+  I++   +
Sbjct: 658 QELGDDAEIKVIGQV 672


>UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y7F7_COPPD
          Length = 671

 Score =  366 bits (939), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 231/670 (34%), Positives = 392/670 (58%), Gaps = 25/670 (3%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           + +++ + M+++P+P+ +LD+LF FN+  S++VL+++++T+   EF++FP+++LF     
Sbjct: 8   LFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLMLFAVFFH 67

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINFMVITKG 144
           L L V+S R IL+ G+ GA A      AFG  ++G GN+ +G+V+FV+L+I+ +MVIT G
Sbjct: 68  LVLIVSSARAILVTGNPGALAT-----AFGKLIMGQGNWVVGLVIFVVLLIVQYMVITSG 122

Query: 145 AGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKF 204
             RI+EV ARF LD MPG+QMAIDADL+AG I  +EA+++R  + +E+DF+G+MDGAS+F
Sbjct: 123 QQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAMDGASRF 182

Query: 205 VRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAA 264
           VRG+ +A  L  V+N +GG++VG+L+ G +   A   Y  + IG  L   I +L +S +A
Sbjct: 183 VRGETMASALAAVVNALGGMVVGLLK-GEAAVDALLHYLGVAIGVALQIAISSLALSLSA 241

Query: 265 GVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
            ++V RVS++Q +GE++ ++L + P ++ +   VL +  L+PG+P L+ +     L+   
Sbjct: 242 ALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGVLLI--- 298

Query: 325 WWIRGREQKAPAE---PKPV---KMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378
           W+  GR  K  AE   P+ V   ++ E  +  EA    V + D++ +E GY L+P+ D  
Sbjct: 299 WF--GRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVGV-DAVELEFGYELLPLFDTT 355

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
              ++L  I  +RK  ++E GF  P + I DN+ L+P +YRI ++GV  G G    G  L
Sbjct: 356 SGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLLL 415

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A+  G+    + G  T +P F L+A WI  + K +A+  G TVV+  T+V THL  ++  
Sbjct: 416 AMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLKS 475

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
             A+L  RQ  + ++D V +  P + E+L   V +L  +  V + LL E++P+RD+  + 
Sbjct: 476 SLADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRVF 534

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           E + +      D  E   + R A    + +     +  + VI L   +ER L+++ Q G 
Sbjct: 535 ELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPGS 594

Query: 619 GLEPGLA----DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVLS 673
            +   L+     +++ + ++A           VL+V+  +R  L   L R+ L +L VLS
Sbjct: 595 EIGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVLS 654

Query: 674 NLELSDNRHI 683
             E+ D +++
Sbjct: 655 YNEIMDAKYV 664


>UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL
          Length = 686

 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/681 (33%), Positives = 388/681 (56%), Gaps = 30/681 (4%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           +L+++I++M+++PLP +++D L   NI L+I+V + + + +R L F+ FP++LL TTL R
Sbjct: 19  VLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLITTLFR 78

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           LAL+++++R+IL++     A AGK++  FG F++G + A+G V+F I+ ++ F+VITKG+
Sbjct: 79  LALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVITKGS 133

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LDGMPGKQM+IDADL AG+I    AK+RRS + +E+  YGS DGA KF+
Sbjct: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQLYGSFDGAMKFI 193

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAGI+I+ +N++GG+ VG+ QHGMS+  A  +YT+LTIGDGLV+QIPAL+IS +AG
Sbjct: 194 KGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLISISAG 253

Query: 266 VIVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
            IVTRV+ D D +G  +++Q+F NP V+++++A+   +G++PG P  VF L    L  L 
Sbjct: 254 FIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALF 313

Query: 325 WWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM-----EVGYRLIPMV-DFQ 378
           ++     +K   + K +  ++++        D   + SL M      +    +P++  F 
Sbjct: 314 YY-----KKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFA 368

Query: 379 QD----GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           ++     ++ G I  IR +F  + G   P +  R + +L+     +L+  V   S + Y 
Sbjct: 369 ENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYF 428

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTVVATHLN 493
            +    +       L G   V  ++    I W++ +  E        +  A       L+
Sbjct: 429 DKVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLS 487

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
             +  +  E+FG QE + +LD+     P L +++    VT+  + +VLQ LL E + +R+
Sbjct: 488 QALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGENISVRN 546

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           ++ I+E+LA  AP + D   L   VR +L R I  +      E+ V+ L   +E  + + 
Sbjct: 547 LKLIMESLALWAPREKDVITLVEHVRASLSRYICSK-IAVSGEIKVVMLSGYIEDAIRKG 605

Query: 614 L-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           + Q  GG    ++  ++D ++     AL          VLLV+  +R  + R +      
Sbjct: 606 IRQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKS 665

Query: 669 LVVLSNLELSDNRHIRMTATI 689
           ++V+S  E+ +   I +  TI
Sbjct: 666 ILVISYAEIDEAYTINVLKTI 686


>UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp.
           NGR234 RepID=C3KN99_RHISN
          Length = 714

 Score =  362 bits (928), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 241/679 (35%), Positives = 381/679 (56%), Gaps = 43/679 (6%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
           +++L ++MM++P+P F++D+L  FN   S+++L+ A++     +F++ P+I+L  TL RL
Sbjct: 25  VVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGALYISSPAQFSSLPSIILLGTLFRL 84

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           AL + +TR+IL E     A AG++V AFG F+VGG+  +G++VF+I+ I  F+VITKGA 
Sbjct: 85  ALAITTTRLILTE-----ADAGQIVAAFGSFVVGGDVLVGLIVFLIITIAQFVVITKGAE 139

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEVGARF LD MPGKQM+ID +  +G I + EA+++R ++ +E+ FYG+MDGA KFV+
Sbjct: 140 RVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLERESQFYGAMDGAMKFVK 199

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y+LLT+GDGL++QIPAL+++ AAG 
Sbjct: 200 GDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGDGLISQIPALMMAVAAGA 259

Query: 267 IVTRVSTD---QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           +VTRV +    QD+  +++ QL ++   + L+AA+L   GLVPG P +VF    AGL GL
Sbjct: 260 VVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVPGFPLIVFWPL-AGLAGL 318

Query: 324 AWWIRGREQKAPA---------EPKPVKMAENNTVVEATWNDV-----------QLEDSL 363
             +   + Q A           E +PV  +    VV+    ++           +L  ++
Sbjct: 319 LAYAARKRQAAEEVTGSAQNRREARPV--SPGGRVVDHIAGNLPGAGSDLGMAHRLTLTM 376

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
           G  +G RL P + F +      R  S+ +   +++G   P +    +  L  A +RI  +
Sbjct: 377 GEGLGERLPPPL-FAE------RTESLAEAILEDLGIRVPAIGRLTDARLATAEFRIDFE 429

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF-GLNAIWIESALKEQAQIQGYTVV 482
           GV +  G   P   +A +       L       P   GL  +WI+ +        G    
Sbjct: 430 GVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAAALDAAGVGYC 489

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           EA+ VV T +  ++ ++A +    QE + LL R+      LT++++  VV+   L  VL+
Sbjct: 490 EAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVL-DVVSAQRLSDVLR 548

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            L++E VPI +MR IL+T+AE      +   L   VR  LGR I  +       V    L
Sbjct: 549 RLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADSNRIVSAYLL 608

Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQTQEAL-SRQEMLGAPP--VLLVNHALRPLLS 659
             P E  L  A++   G    + +RL A   E L  R+E  GA     +L +  LR  + 
Sbjct: 609 TRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGAQSRAAILTSMDLRRHIR 668

Query: 660 RFLRRSLPQLVVLSNLELS 678
             L R   Q+ VLS  E++
Sbjct: 669 NLLMRHDVQMAVLSYQEIA 687


>UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria
           RepID=Q254G8_CHLFF
          Length = 709

 Score =  351 bits (900), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 237/666 (35%), Positives = 385/666 (57%), Gaps = 32/666 (4%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
           M++LPLP  I+DL+ T N+A+S+ +L+VA++    L+ + FP++LL TT+ RL +N++S+
Sbjct: 39  MIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSS 98

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           R IL++ +     AG V++AFG F+VGGN+ +G ++F+I+ II F+V+TKGA R+AEV A
Sbjct: 99  RQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAA 153

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD MPGKQMAIDADL AG+I   +A+ +R  + +E++ YG+MDGA KF++GD IAGI
Sbjct: 154 RFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMDGAMKFIKGDVIAGI 213

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I +INIVGGL +GV  HGM +  AA  YTLL+IGDGLV+QIP+L+IS  AG++ TRVS+
Sbjct: 214 VISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLLISLTAGIVTTRVSS 273

Query: 274 DQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF--LLFTAGLLGLAWWIR- 328
           D+  ++G+++ +QL   P  +LL++A    +G   G P   F  L F  GLLG+    + 
Sbjct: 274 DKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILSFIFGLLGVILLAKK 333

Query: 329 ---GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ-QDGELL 384
               ++  + A       A+         +D  L   + +E+G  L  ++  + + G+  
Sbjct: 334 NSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDLSALIQHRTKSGQSF 393

Query: 385 --GRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMKGVEIGSGDAYPGRWLA-- 439
               I  +R+   Q++G   P +H+R D+  L+   Y IL+  V    G   P   L   
Sbjct: 394 IDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPYVRGKIPPHHVLTNE 453

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALK---EQAQIQGYTVVEASTVVATHLNHLI 496
           +        LP   T   A GL + W+    K   E+A I+ +T +E   V+  HL++  
Sbjct: 454 VEENLKRYNLPF-ITYKNAAGLPSAWVSEDAKTILEKAAIKYWTPLE---VIILHLSYFF 509

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
            + + E  G QE + +++ + +  P L ++ V  ++ L  L ++ + L+ E++ I+D+RT
Sbjct: 510 HRSSQEFLGIQEVRSMIEFMERSFPDLVKE-VTRLIPLQKLTEIFKRLVQEQISIKDLRT 568

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-Q 615
           ILE+L+E A  + D   LT  VR +L   I+ ++  G+  + V  LD  +E ++  A+ Q
Sbjct: 569 ILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQ 628

Query: 616 GGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
              G    L+P   + +L   +  ++     G PPVLL    +R  + + +    P + V
Sbjct: 629 TSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAV 688

Query: 672 LSNLEL 677
           +S  E+
Sbjct: 689 ISYQEI 694


>UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN
          Length = 687

 Score =  350 bits (899), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 252/677 (37%), Positives = 376/677 (55%), Gaps = 56/677 (8%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           I+ +M+LPLP  I+D L   NIA+   +LL+A++    + F++FP++LL TTL RL+L++
Sbjct: 35  IIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSFPSVLLLTTLFRLSLSI 94

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150
           A TR IL+E     A  G +VE FG  + GGN  +G VVF+I+ ++ F+VI KGA R+AE
Sbjct: 95  AITRSILLE-----ANGGHIVETFGSLVAGGNLVVGFVVFLIITVVQFIVIAKGAERVAE 149

Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210
           V ARF LD MPGKQ++ID+DL AGLI +DEAK++R  +  E+  +GS+DGA KFV+GDAI
Sbjct: 150 VAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQLHGSLDGAMKFVKGDAI 209

Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270
           AGI+I++IN++GGL +GVLQ GM +  A  +Y++LTIGDGLV+QIPA++ + AAG++VTR
Sbjct: 210 AGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQIPAILATIAAGLVVTR 269

Query: 271 VSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
            + D+D   +GE +  Q+   P V+L++  +   +  VPG P LVFL+ +  LLG A W 
Sbjct: 270 TAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKLVFLMLSVVLLGFAAW- 328

Query: 328 RGRE-----QKAPAEPKPVKMAENNTVVE---ATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           R R      ++A   P+  + AE  TV E   A    +QLE +  +   +          
Sbjct: 329 RYRHHHPVLRRAFKVPEGERPAEEKTVNEDEIAPPAPLQLELAPSLAAAF---------- 378

Query: 380 DGELLGRIR--SIRKKFAQEMGFLPPVVHIRDN----MDLQPARYRILMKGVEIGSGDAY 433
            GE   R R   I ++  +E G   PV  ++ +     D     YR+   G  +  G   
Sbjct: 379 -GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAFGARLAFGRLS 437

Query: 434 P-GRWLAINPGTA-AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
           P  ++     G A A  LPG     P   L   W   A        G  + +    V+ H
Sbjct: 438 PNAQFRPARAGDANAPKLPG--FFPP---LAGEWTGQA--------GADIRDGLATVSEH 484

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
               + +  A   G QEA  L  R+ ++ P L ++++  VV    +  VL+ L++E VPI
Sbjct: 485 CRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVLRRLVEEGVPI 543

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R++R   E + +    + D   LT  VRVAL R I  ++  G+  + V+ +   LE  L 
Sbjct: 544 RNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLLIHPELEDRLR 603

Query: 612 QALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
           Q+++  GG     + P LA RL A+ +  L+RQ   G  PVLL +  +R  L + L    
Sbjct: 604 QSVRVAGGATQLAISPELAGRLGAEVRSHLARQGE-GIKPVLLCSLDVRRHLRKLLEIDF 662

Query: 667 PQLVVLSNLELSDNRHI 683
            +L VLS  EL+ +  I
Sbjct: 663 FELPVLSYQELAPDLRI 679


>UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus
           RepID=B4EYD9_PROMH
          Length = 699

 Score =  349 bits (895), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 223/698 (31%), Positives = 381/698 (54%), Gaps = 53/698 (7%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
           +++L++ M+++PLP +++D L   NI ++I++ + + + +R L F  FP +LL TTL RL
Sbjct: 20  VMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMTFPALLLITTLFRL 79

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           AL+++++R+IL++     A AG+++ +FG F++G N  +G VVF I+ I+ F+VITKG+ 
Sbjct: 80  ALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIVTIVQFLVITKGSE 134

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEV ARF LDGMPGKQM+IDADL +G+I  +E + RR E+ QE+  YGS DGA KF++
Sbjct: 135 RVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQLYGSFDGAMKFIK 194

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDAIAGI+I+ +N++GG+ VG+ Q G+S+  A  +YTLLTIGDGLVAQIPAL+IS +AG 
Sbjct: 195 GDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVAQIPALLISISAGF 254

Query: 267 IVTRV-STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           IVTRV   + ++G  ++N+L +    +L++A +   +G +PG P  VFL+ +  +LG+ +
Sbjct: 255 IVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPVFLILSV-MLGV-Y 312

Query: 326 WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL----GMEVGYRLIPMVDFQQDG 381
           + + + + +  E K     +N+    A      + +      G EV   L+         
Sbjct: 313 FFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVDNSLLTENITLSQA 372

Query: 382 ELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
           E L  I                 + ++K+F  + G L P + I  +  +   +  IL+  
Sbjct: 373 ETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSDKIDDDKIIILINE 432

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAI--------WIESALKEQAQI 476
           V+    +  P     I         P +  +   F L +I        WIE   + +   
Sbjct: 433 VKAKELNC-PFPLFHIEN-------PNDELLSLGFNLISIEDDNKTHYWIERDDESKLAP 484

Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536
            GY    + +      + LI+ +  E  G QE + +LD++ +  P+L ++     V++  
Sbjct: 485 LGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECYRQ-VSIQR 543

Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596
           ++ VLQ L+ EK+PIR+++TI+  L +    + DP  LT  +R  L R I+  +F    +
Sbjct: 544 INDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYIS-YFFSTDGK 602

Query: 597 VHVIGLDTPLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651
            + I L   +E ++   + Q   G    LEP   D ++ +    +   + +    + L +
Sbjct: 603 FNAIILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYI-QDYIFLTS 661

Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +R  + + +    PQ+ VLS  E++ +  I +  +I
Sbjct: 662 IDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699


>UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1
           Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL
          Length = 703

 Score =  347 bits (890), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 242/701 (34%), Positives = 384/701 (54%), Gaps = 58/701 (8%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
            LI++I+ M+V+PLP  +LD L   N+   ++VL+ A+     L  + FP I+L TTL R
Sbjct: 24  CLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAIVLLTTLFR 83

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           LAL+++S R+ILM GH     AG++++ FG F++G N  +G+V+F I+ I+ F+VITKGA
Sbjct: 84  LALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQFIVITKGA 138

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LD MPGKQM+IDAD  AG+I  D  + RRS + +E+  YGS DGA KF+
Sbjct: 139 ERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGSFDGAMKFI 198

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAGILI+ IN++GG+++G++++ +S   +  +Y++L++GD LV QIPAL+IS  AG
Sbjct: 199 KGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPALLISMGAG 258

Query: 266 VIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
            +VTR+S ++Q++G  +V++L S+  V+L+S+ +  L+GL+PG P  VFL  +A  LG  
Sbjct: 259 FLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTVSAS-LGFF 317

Query: 325 WWIRGR-EQKAPAE------PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI----- 372
            W R R E+ A AE       +P   A      +A   DVQ +      +G+ L+     
Sbjct: 318 CWSRWRAERSASAEGRHANAGRPALQALGAGTAQAD-ADVQADTDTAF-LGHPLVVILPH 375

Query: 373 -----PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVH---------IRDNMDLQPARY 418
                P +  Q          S+  +   E+G L P +          + D  D   AR 
Sbjct: 376 ACAHTPSLSPQNLAT------SLHARVFDEVGLLLPTIVVGFAAADAIVSDAQD--DARQ 427

Query: 419 RILMKGVEIGSG---DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
           R++++  ++ +     A+ G  L  +     G     + +    G  A W+   + + AQ
Sbjct: 428 RVVIRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV---MAQPAQ 484

Query: 476 IQGYTVVEASTVVATHLNHL--ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
           +Q   +   S +   H   +  I ++ +E FG QE + LLD +    P+L ++ V   + 
Sbjct: 485 LQDIGIAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKE-VYRQIP 543

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593
           +  L ++L+ LL E+V IR+M+ ILETLA     + D   LT  VR+ALGR I+ +    
Sbjct: 544 VQKLCEILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHR-IAR 602

Query: 594 KDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVL 648
              + VI L    E  + Q ++         L P +A+ L+ +   AL++   +    VL
Sbjct: 603 NGHMKVIVLTPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVL 662

Query: 649 LVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           L +  +R      +    P L V+S  E+SDN  + +   I
Sbjct: 663 LASMDVRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703


>UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group
           RepID=A0RCA3_BACAH
          Length = 693

 Score =  345 bits (885), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 220/665 (33%), Positives = 363/665 (54%), Gaps = 32/665 (4%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           +++PLP FILD++  F +++S+++ + A       E  +FPT+LL   + R+++NV++TR
Sbjct: 28  LLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDELKSFPTMLLLIGIFRVSINVSTTR 87

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
            IL  G+     AG V+E FG F++GGN  IGIV+F +L+I  F+V   GA R AEV AR
Sbjct: 88  AILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFTVLIIFQFIV-ANGASRTAEVAAR 141

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD +PGKQM+IDADLN  +I E +A+ +R ++  E +FYG+MDGA KF++GD I GI+
Sbjct: 142 FTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNMETEFYGAMDGAGKFIKGDVIFGIV 201

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--S 272
           I+ +NI+ GL+VG++Q GMS G AA  YT LT+GDG+V QI +L+++ + G+IVTRV   
Sbjct: 202 ILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGIVNQIGSLMLAISTGIIVTRVFDG 261

Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF--TAGLLGLAWWIRGR 330
           +   V E +  +L ++  V+     +   +G+   +P L F L   T   LG+    R +
Sbjct: 262 SPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLPFLPFALVGGTIIFLGIRNKKRIK 321

Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG---------MEVGYRLIPMVDFQQDG 381
           ++K     K ++M +     E      Q+EDS G         +E+G  L  +V  + +G
Sbjct: 322 KEKEDELQKEIEMIQGED--EQLQ---QVEDSFGVFTDKYPIIVELGLDLAALVKQKING 376

Query: 382 ELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYPGRWLA 439
           E    ++  +RK    ++G   P ++ +DN   +P  RY I +KG +   G    G  LA
Sbjct: 377 ETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIRIKGAKAAEGVLKSGYLLA 436

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +        L  E   DP FG +  WI   + + AQ++GY V+E  +++ THL+ ++ ++
Sbjct: 437 LKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQVLEPLSILITHLDVVVRRN 496

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
             EL  RQ  + L++ +  +   L E++    + L+ +  V++ LL E + IRD+ TI+E
Sbjct: 497 LHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVIKQLLKEGISIRDLPTIIE 556

Query: 560 TLAEHAPI-QSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE---RLLLQALQ 615
            + +   I Q+    +T+ VR  + + I +       +++       +E    ++  + Q
Sbjct: 557 GIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAALFSDSIELDADVVNNSYQ 616

Query: 616 GG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA-LRPLLSRFLRRSLPQLVVLS 673
           G     +  L  R++ Q Q    +  ++G  PVLL      R  + R L R   +  VL 
Sbjct: 617 GYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFRFAIVRLLERYQVEAQVLC 676

Query: 674 NLELS 678
             EL+
Sbjct: 677 ISELA 681


>UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105
           RepID=A6GN34_9BURK
          Length = 705

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 231/709 (32%), Positives = 388/709 (54%), Gaps = 58/709 (8%)

Query: 12  ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           A L S + +++   ++IL+I+ MMV+P+   ILD+L   NI++S+++++ A+  +  L F
Sbjct: 9   ARLASARSEVVGASLIILMIV-MMVIPMGPGILDVLLAINISVSVVLVISAVLIETPLAF 67

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
           ++FP +LL TTL RL+L +++TR IL+EG      AG +V+ FG F+VGGN A+G+ +F+
Sbjct: 68  SSFPALLLMTTLFRLSLTISTTRQILLEGD-----AGHIVQTFGEFVVGGNVAVGLTIFL 122

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI +  AK+RRS++ +E
Sbjct: 123 IISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQRRSDLEKE 182

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
           +  +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS   A   YT+L++GDGL
Sbjct: 183 SQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYTILSVGDGL 242

Query: 252 VAQIPALVISTAAGVIVTRVSTDQ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           VA IP+L++S AAG+IVTRV+  +    +  + M+  L  N + + +S     L   VPG
Sbjct: 243 VAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFCFLFAFVPG 302

Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGME- 366
           MP+ VFL  +A LL   ++I  +  KA       + ++   ++ A+   ++++D L    
Sbjct: 303 MPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSD---MLSASGKSIKMDDILHTNT 359

Query: 367 ---VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY----- 418
              +  RL   ++     ++    R  R +  +++G L P+    ++ +     Y     
Sbjct: 360 FAPLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFVEFYVYGVP 419

Query: 419 ----RILMKGVEIGSG----DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESAL 470
                I  K + I S      A PG    I      G    +   DP        ++  L
Sbjct: 420 AMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKY--DMLCDP--------LQKTL 469

Query: 471 KEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ----LLDRVAQEMPKLTED 526
            +Q +++  T     T + + +  L+ Q   +LF   E Q+    L D+  +++ +L E 
Sbjct: 470 LDQHKLEYLTF---ETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ER 525

Query: 527 LVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAI 586
           ++P    +T + +VLQ LL E V I++MR+IL +L E    + DP  +   VR  L   I
Sbjct: 526 VLP----VTKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQI 581

Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEM 641
             Q    + ++ V  L    E+L+ ++ +  G      ++    + L+   +E      +
Sbjct: 582 CHQH-THERKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLV 640

Query: 642 LGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
               P ++ +   R    + ++ SL  + VLS+ E+S N  I++   I 
Sbjct: 641 GNYVPAIVCSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689


>UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX
          Length = 675

 Score =  337 bits (863), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 224/689 (32%), Positives = 376/689 (54%), Gaps = 40/689 (5%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K+  +  L   +   + + MM++PLP  ++D++   NI+ ++++L+++++ +  LE  +F
Sbjct: 10  KAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSF 69

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           PTILL TTL+RL+L+V++TR+IL+        AG ++ +FG+F+VGGN  +G+V+F I+ 
Sbjct: 70  PTILLITTLMRLSLSVSTTRLILLHHD-----AGDIIYSFGNFVVGGNIVVGLVIFTIIT 124

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK  RS V +E+ F
Sbjct: 125 IVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQKESQF 184

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q  M    A   +++L++GD LVAQ
Sbjct: 185 YGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDALVAQ 244

Query: 255 IPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310
           IPAL+IS  AGV+VTRV      ++++   +V Q+  N    L+SAA++ ++ ++PG P 
Sbjct: 245 IPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGFPA 304

Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370
           LVFL     LLG+AW ++ +        K    A+             L +S  +  G  
Sbjct: 305 LVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMGAD-------------LSNSQNISPGAE 351

Query: 371 --LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
             ++ +       ++  +I  +R  F +E G   P + +    +   A   +L +  E  
Sbjct: 352 PLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQ--ESI 409

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ--AQIQGYTVVEAST 486
             D      +    G A  +      V      N+I  ++    Q  A + G  V   + 
Sbjct: 410 YKDTLIDDTVYFEAGHAEISFE---FVQEKLSTNSIVYKTNKTNQQLAHLTGMDVYATTN 466

Query: 487 VVATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545
              T  L  L+  +A E  G QE + L+D + ++  +L ++L    + L+ +  +LQ L+
Sbjct: 467 DKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRLV 525

Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605
           +E V IRD+RTI ETL   +  + D   L   VR+AL R I  ++      ++V  + + 
Sbjct: 526 EENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSD 585

Query: 606 LERLLLQAL-QGGGGLEPGLADRLLAQTQEALSRQEMLGAPP---VLLVNHALRPLLSRF 661
           +E  L +++ Q   G    ++     +T++ +   + +  P    V+L    +R  + + 
Sbjct: 586 IENELRESIRQTSSGSYLNISPE---RTEQIIGFLKNIMNPTGNGVILTALDIRRYVKKM 642

Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           +  S P + VLS  E+ +N  +++  T+ 
Sbjct: 643 IEGSFPSVPVLSFQEVGNNIELKVLGTVN 671


>UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae
           RepID=Q2NR60_SODGM
          Length = 665

 Score =  335 bits (860), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 221/666 (33%), Positives = 361/666 (54%), Gaps = 45/666 (6%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLPA+++D L   NI ++++V + A +  R L F+ FP +LL TTL RLAL ++++R+IL
Sbjct: 31  PLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVLLITTLFRLALTISTSRLIL 90

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
            +     A AG+++  FG F++G N  +G V+F I+ ++ F+VITKG+ R+AEV ARF L
Sbjct: 91  TD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQFIVITKGSERVAEVAARFCL 145

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           DGMPGKQM+IDADL  G+I  + A++RRS + +E+  YG+ DGA KF++GDAIA I++  
Sbjct: 146 DGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAFDGAMKFIKGDAIASIIVAF 205

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD- 276
           +N +GG+ VG+ QH M +  A  ++TLLTIGDGLV QIPAL+IS +AG+IVTRV+ D D 
Sbjct: 206 VNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPALLISISAGLIVTRVNGDGDN 265

Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336
           +G  ++ QL  NP V+L++A +   +G++PG P  VF++  A  LG    +R R+ +   
Sbjct: 266 LGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVML-AMALGTLLLMRQRQTRVVP 324

Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396
            P     A         + +  + ++L + +          +++ +L  R+R    +F  
Sbjct: 325 LPAAADYA-------GGYPERIMPEALAVILQVSRANYARLEKE-QLCERLRG---QFLI 373

Query: 397 EMGF-LPPVVHIRDNMDLQPARY---RILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452
           + G  LPP++       L P  +   R ++  +     D +      ++       +PG+
Sbjct: 374 DFGVALPPLM-------LCPCEHTDDRTVVVVLNEIRADVF-----TLHFDMLRRVIPGD 421

Query: 453 ATVDPAFGLN----AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
               P   L+    A+W     +E+    G  +  A   +      +++ H  E FG QE
Sbjct: 422 RPCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVMLTHHVNEFFGVQE 481

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
            + LLD++    P L ++++    T+  + ++LQ LL E++ IR ++ I+E +A  AP +
Sbjct: 482 TKHLLDQMESHAPDLLKEVLRH-ATVQRIAELLQRLLMERISIRHLKLIMEAMALWAPRE 540

Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPG 623
            D   L   VR AL R I  Q F   + + VI L + +E  L  +L          L P 
Sbjct: 541 KDVSALVEHVRCALARYICHQ-FAADNLLRVIMLSSEVEETLRDSLHTTSAGTFLNLGPQ 599

Query: 624 LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
           +++ L+     AL    +     VLL    +R  +   ++     L VLS  EL+++  +
Sbjct: 600 VSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEVLSFGELTESVTV 659

Query: 684 RMTATI 689
            +  TI
Sbjct: 660 NVIKTI 665


>UniRef50_P74856 Secretion system apparatus protein ssaV n=63
           Tax=Gammaproteobacteria RepID=SSAV_SALTY
          Length = 681

 Score =  333 bits (853), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 383/686 (55%), Gaps = 35/686 (5%)

Query: 14  LKSTQW-QILAG------PILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
           +++ QW  + AG        ++L+ + MM+LPLP +++D+L T N+  S+++LL+A++  
Sbjct: 9   VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS 68

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
             L+ + FP++LL TTL RL+L ++++R++L++ +     AG +V+AFG F+VGGN  +G
Sbjct: 69  DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVG 123

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
           +VVF I+ I+ F+VITKG  R+AEV ARF LDGMPGKQM+ID DL AG+I  D A+  R 
Sbjct: 124 LVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQ 183

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
            V QE+ F G+MDGA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM  A  +Y++L+
Sbjct: 184 HVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLS 243

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           IGDGL  QIP+L+IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++L+A VL LL L
Sbjct: 244 IGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLAL 303

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364
           +PG P +    F+A LL L   I  R +K+      V+  E +++V              
Sbjct: 304 IPGFPFITLAFFSA-LLALPI-ILIRRKKSVVSANGVEAPEKDSMVPG-----------A 350

Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
             +  RL P +      +L+  I ++R    ++ G   P V+I   +  +P     ++  
Sbjct: 351 CPLILRLSPTL---HSADLIRDIDAMRWFLFEDTGVPLPEVNI--EVLPEPTEKLTVLLY 405

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
            E     + P +   +  G  A  +    T+    G    W+   +  +AQ  G  V   
Sbjct: 406 QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-QICWLTKDMAHKAQGFGLDVFAG 464

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
           S  ++  L  ++ +H  E  G QE + L++ + +   +L ++L    + +  + + LQ L
Sbjct: 465 SQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRL 523

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           + E+V IRD+R I  TL + AP + D   LT  VR+AL R I ++  P    + ++ +  
Sbjct: 524 VSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGE 583

Query: 605 PLERLLLQAL-QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
            +E L+ +++ Q   G    L+ R   Q  + + +     A   ++ +   R  L +   
Sbjct: 584 GIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITE 643

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689
            +L  + +LS  EL +   I++  +I
Sbjct: 644 ATLFDVPILSWQELGEESLIQVVESI 669


>UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria
           RepID=Q48IR5_PSE14
          Length = 727

 Score =  330 bits (845), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 230/696 (33%), Positives = 385/696 (55%), Gaps = 47/696 (6%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
            +L+ ++MM++P+P +++D L   NIALS+++L+VA +   ++EF+A P ++L +TL RL
Sbjct: 25  FMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALPPLILLSTLFRL 84

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           +L++ +TR+IL++G+     AG +V+AFG F++ G   +G+VVF+I+ +  F+VITKGA 
Sbjct: 85  SLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITVAQFVVITKGAE 139

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEV ARF LD MPGKQM+ID DL  G I   EA++RRS + +E+  +G+MDGA KFV+
Sbjct: 140 RVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMFGAMDGAMKFVK 199

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDAIAG++I+ +N++GG+++G++Q GM    AA  Y+LLT+GDGL+AQIPAL+IS AAG 
Sbjct: 200 GDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQIPALLISVAAGT 259

Query: 267 IVTRVSTD---QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           +VTRV++D   +D+  ++V QL ++   + L+A +L  +G++PG P LVF+   A L G 
Sbjct: 260 VVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLVFVGLAAVLGGS 319

Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVE--------ATWNDVQLEDSLG----------- 364
           A+ +  R+++A       ++ E+ T+ E           ND   ED+L            
Sbjct: 320 AFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAA-EDALESAERPRDSQVL 378

Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
           + +G  L      Q    L  RI ++       +G   P+  +  +  L   R+++ ++G
Sbjct: 379 LSIGTGLAEAAPLQP---LRQRIEALCHDIRINLGVEVPLPEVYLDRSLPVDRFQVELEG 435

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALKEQAQIQGYTV 481
           V +  G+ + G  L +        L    T +   P       W      ++ Q  G   
Sbjct: 436 VPVSEGE-FSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHADRLQDAGIGF 494

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           + A  V+   L+  + ++AA+  G QE + +L+++  +  +L ++++  ++ L  + + L
Sbjct: 495 LFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVLR-ILPLQRIAEAL 553

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           + L+ E V IR  R +LE++ E   I+SD   LT  +R  L R I+ Q+      +    
Sbjct: 554 RLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYADRNRVISAFV 613

Query: 602 LDTPLERLLLQALQGGGGLEPGLADRL-------LAQTQEALSRQEMLGAPPVLLVNHAL 654
           L   LE  L   L         L D +       L +  + L   ++     VLLV+  L
Sbjct: 614 LAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRRLCDMLPEHDL----TVLLVHSEL 669

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R  + R + R   QL VLS  EL+   +++   T+ 
Sbjct: 670 RRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705


>UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL
          Length = 707

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 221/649 (34%), Positives = 363/649 (55%), Gaps = 26/649 (4%)

Query: 45  DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGA 104
           D+L  FN+  +I++L+VA++    L+F++ P ++L +T+ RLAL +A+TR+IL EG    
Sbjct: 41  DMLIGFNLGFAILLLMVALYLSTPLDFSSLPGVILISTVFRLALTIATTRLILAEGD--- 97

Query: 105 AAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQ 164
             AG ++  FG F++ GN A+GIV+F+I+ ++ FMV+ KGA R+AEV ARF LD +PGKQ
Sbjct: 98  --AGSIIHTFGDFVISGNIAVGIVIFLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQ 155

Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224
           MAIDA+L    I + EA++RR+ + QE+  +G+MDGA KFV+GDAIAG++++ IN++GG+
Sbjct: 156 MAIDAELRNNHIDQHEARRRRAALEQESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGI 215

Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMV 282
            +G+L   MS+  A   YTLLTIGD L++QIPAL++S  A  IVTRV+  +   +G  +V
Sbjct: 216 SIGLLSKDMSLDAAMHHYTLLTIGDALISQIPALLLSITAATIVTRVNGPSKLKLGADIV 275

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR-GREQKAPAEPKPV 341
           +QL ++   + L+A VL L+G VPG P   F++  A L   A +++ G +   PA     
Sbjct: 276 SQLTASTQALRLAACVLLLMGFVPGFPLPPFVIL-AVLFAAASYVKVGAKGDEPAAKTGA 334

Query: 342 KMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGF 400
            +  +           Q   +  + +   L P +    D  EL   I  +    + ++G 
Sbjct: 335 NVTASAPAPAQAQAQKQAAHAEALPIALFLAPNLTHSIDKDELEQSIARVSTSVSADLGI 394

Query: 401 LPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG-EATVDPAF 459
             P +  R + +L  +++RI +  V +      P + L +N   A   L G     DP  
Sbjct: 395 TVPRIPARIDQNLSKSQFRIDVDSVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPET 453

Query: 460 GLNAIWIE---SALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
               +WIE   +A  + A I  +  VE   ++A  L+  ++++A  L G QE +QLL R+
Sbjct: 454 A--RVWIEERHAAALKAAGIGHHRPVE---ILALRLHSTLTRYAQRLVGIQETRQLLARM 508

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
            QE   L ++++    T+  + +VL+ LLDE +PIR+ R +LE LAE +  + +   LT 
Sbjct: 509 EQEYADLVKEVL-RTATIPRIAEVLRRLLDEGIPIRNTRLLLEALAEWSEREQNAVLLTE 567

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631
            VR AL R I  ++      V    ++   E ++  +++         L+   +++LL+Q
Sbjct: 568 YVRAALKRQICFRYANAHRVVAAFIIERETEEIVRVSVRETAVGPYLVLDDWQSEKLLSQ 627

Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
            ++  S      + PV+L +  +R  +  FL R+   L VLS  +L+  
Sbjct: 628 FRQIHSTIAQSQSQPVILGSMDIRRFVRGFLTRNGLDLPVLSYQDLASE 676


>UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6
          Length = 691

 Score =  324 bits (831), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 225/673 (33%), Positives = 378/673 (56%), Gaps = 25/673 (3%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           +++PLP F+LDL+    +A S++V + A   +   E  +FP++LL   + R+++N+++TR
Sbjct: 23  LIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMGIFRVSINISTTR 82

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
            IL  G       G+V++ FG+F++G NF +GIV+F+IL++  F ++  G+ R AEV AR
Sbjct: 83  AILTTGD-----PGQVIKQFGNFVIGSNFVVGIVIFIILIVFQF-IVANGSSRTAEVAAR 136

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD +PGKQMAIDADLN  LI E EAK++R+ +  E +FYG+MDGA KFV+GD +  +L
Sbjct: 137 FTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAGKFVKGDVLFTVL 196

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--S 272
           + V+NIV GL+VG++Q G+S G AA  YT LTIGDG+V+QI +L+++ +AGVIVTRV   
Sbjct: 197 LAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAMSAGVIVTRVFDG 256

Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF--LLFTAGLLGL--AWWIR 328
           +D +V   +  +L  N  V+   +A+  L+G+   +P + F  +    G++G    + ++
Sbjct: 257 SDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVLGIIGYRTQFNLK 316

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWND----VQLEDSLGMEVGYRLIPMVDFQQDGELL 384
            +EQ    +   +  +E N+  EA  N      + +  + +E+G  +  +V  + +GE  
Sbjct: 317 KKEQLELEKEMELIQSETNS-AEAEHNQAFGAAREKFPVVVELGLNIAALVKQKMNGETA 375

Query: 385 -GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYPGRWLAINP 442
             ++  +RK   Q++G   P ++ +DN   QP  +Y I +KGV + SG    G  LA+  
Sbjct: 376 KDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKAGHLLALKT 435

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
                 L  E T DP FG +  WI     E AQ++ Y V+E  +++ THL+ ++ ++  E
Sbjct: 436 PGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDVVLRKNLHE 495

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
           L  RQ+ + L+D +A E   L +++    +  + +  VL+ LL E + +RD+ TI+E + 
Sbjct: 496 LLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDLPTIVEGII 555

Query: 563 EHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--RLLLQALQGGGG 619
           +   I  +D   +TA VR  + + I +Q      +++ + L   +E    ++     G  
Sbjct: 556 DGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIVNTPYYGYA 615

Query: 620 LEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNHA-LRPLLSRFLRRSLPQLVVLSNLE 676
           L   L   L  + + ++ +++ ++ G  PV+L      R    R L R    + VLS  E
Sbjct: 616 LNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLDVPVLSISE 675

Query: 677 LSDNRHIRMTATI 689
           LS    +   A I
Sbjct: 676 LSPETEVEQIALI 688


>UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales
           RepID=Y4YR_RHISN
          Length = 697

 Score =  321 bits (822), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 369/670 (55%), Gaps = 36/670 (5%)

Query: 33  SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92
           SMMV+P+P   +D L  FN+ L++++L+ A++    L+F++ P ++L +T+ RLAL VA+
Sbjct: 29  SMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVFRLALTVAT 88

Query: 93  TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152
           TR+IL EG      AG ++  FG F++ GN  +G V+F+++ ++ FMV+ KGA R+AEV 
Sbjct: 89  TRLILAEGE-----AGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVA 143

Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212
           ARF LD +PGKQMAIDA+L  G I  DE+++RR+ + +E+  YG+MDGA KFV+GD+IAG
Sbjct: 144 ARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAG 203

Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272
           ++++ IN++GG+ +G+L  GMS       YTLLTIGD L++QIPAL++S  A  +VTRV+
Sbjct: 204 LVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGDALISQIPALLLSITAATMVTRVT 263

Query: 273 --TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330
             +  ++GE + NQL ++   + L+A VL  +G VPG P  VF +  A     ++     
Sbjct: 264 GASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVKGDV 323

Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390
                 +   V  AE+      T N     + +G+ +   L   +D     EL   I  I
Sbjct: 324 LDADKVDATTVTPAESQ-----TPNVAAQPNPIGVFLAPSLTNAID---QVELRQHIARI 375

Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN--PGTAAGT 448
            +  + ++G + P + +  +  L  +++RI ++GV +      P +    +      +  
Sbjct: 376 SQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPAQLSLADDLKKIESSG 435

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           +P     DP    + IW+E + +   +  G      S ++A  ++  ++ HA  L G QE
Sbjct: 436 IPFRH--DPE--THRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLTCHAPRLVGIQE 491

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK---VLQNLLDEKVPIRDMRTILETLAEHA 565
            +QLL R+ QE      DLV  V+  T + +   VL+ LL E +PIR+ R +LE LAE +
Sbjct: 492 TRQLLGRMEQEY----SDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVLEALAEWS 547

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEV---HVIGLDTP-LERLLLQALQGGG--G 619
             + +   LT  VR  + R I  ++  G+  V    V+  +T  + R  ++    G    
Sbjct: 548 EREQNVALLTEHVRSGMKRQICHRY--GRHGVLPAFVMERETEDVVRCAVRETAAGPYLA 605

Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679
           LE   ++ LL+Q ++  S        P++L +  +R  +  FL R+  +L VLS  +L+ 
Sbjct: 606 LEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSYQDLAS 665

Query: 680 NRHIRMTATI 689
           +  I+   +I
Sbjct: 666 DFKIQPVGSI 675


>UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria
           RepID=HRCV_RALSO
          Length = 690

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 332/604 (54%), Gaps = 51/604 (8%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  ++D L   NI LS+++L+V M+       +AFP++LLFTTLLRL+LN+AST+ IL
Sbjct: 30  PLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSLNIASTKSIL 89

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
           +      A AG ++E+FG  +VGGN  +G+VVF+I+  + F+VI KG+ R+AEVGARF L
Sbjct: 90  LH-----ADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTL 144

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQM+IDADL AG +  +EA+KRR+ +  E+  +G MDGA KFV+GDAIAG++I +
Sbjct: 145 DAMPGKQMSIDADLRAGHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITL 204

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-- 275
           +NI+ G+++G+  H M+ G AA  + +L+IGD +V+QIP+L+IS AAGV++TRVS ++  
Sbjct: 205 VNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVSQIPSLLISVAAGVMITRVSDEEQA 264

Query: 276 ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE 331
                +G ++V QL ++   M  ++A+L    LVPG P+ +F+     +    + +R R 
Sbjct: 265 HKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTLRNRA 324

Query: 332 QKA--------PAEPKPVKMAENNTVVE-ATWNDVQLEDSLGMEVGYRL-IPMVD--FQQ 379
           ++         PA  +     +  T+ E A    V +   LG E+   L +P +D  FQQ
Sbjct: 325 KEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQ 384

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
                      R   A+ +G   P + I     LQP  Y + +  +  G   A P   L 
Sbjct: 385 G----------RHALAEALGLPFPGIAIWKADALQPDSYEVRVHDIP-GEPVAVPDGHLL 433

Query: 440 I--------NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
           I             A  LP      PA      WI  A   Q      T      V+A H
Sbjct: 434 IPDLPEALRAQAVEAAGLPNH----PA----PHWIAPAHVAQDAALSATGQRVERVIADH 485

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           + H++ + A    G QE Q +L+RV  + P L  +     V    +  VL+ LL+E+VPI
Sbjct: 486 VVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAE-AQKAVPAQRIADVLRRLLEEQVPI 544

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R+MR ILE+L    P + D   L   VR  LGR I  Q   G  ++  I LD  +E+ + 
Sbjct: 545 RNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVR 604

Query: 612 QALQ 615
           QA++
Sbjct: 605 QAIK 608


>UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B2TCZ3_BURPP
          Length = 691

 Score =  316 bits (809), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 235/679 (34%), Positives = 378/679 (55%), Gaps = 33/679 (4%)

Query: 28  ILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLA 87
           +L +L +++LP+P+F+LDL    +   S ++L   ++  + +E ++FP++LL TTLLRLA
Sbjct: 28  MLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFPSLLLVTTLLRLA 87

Query: 88  LNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGR 147
           L +AST++IL+  H     AG+++ AFG  +VGGN A+G+VVF++L  I F+V+ KGA R
Sbjct: 88  LAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSAIQFIVVAKGADR 142

Query: 148 IAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRG 207
           +AEV ARF LDG+PG+QM+IDADL  GLIG  EA + R E+ +E  FYGS+DGA KFV+G
Sbjct: 143 VAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFYGSLDGAMKFVKG 202

Query: 208 DAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVI 267
           DAIAG+++ ++NI GGL VG+ Q GMS+  A  +YT+LT+GDGLV+QIP+L++S +AG++
Sbjct: 203 DAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQIPSLIVSISAGLL 262

Query: 268 VTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324
           VTRVS+     ++G  +  QL ++P  M+++      L  +PG P++ F+L    L+GLA
Sbjct: 263 VTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQFVLAAVVLIGLA 322

Query: 325 WWI--RGREQKAPAEPK-PVKMAENNTVVEATWNDVQLEDSLGMEVGYRL-IPMVDFQQD 380
             +  +       A PK P    +    V+   +DV+L  S  + V  RL     +    
Sbjct: 323 VALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRV--RLGSAACNALNA 380

Query: 381 GELLGRIRSIRKKFAQEMGF-LPPVVHIRD-NMDLQPARYRILMKGVEIGSGDAYPGRWL 438
            EL  ++  +R+     +G   P +V +RD  +D+   RY + +  V    G    G  L
Sbjct: 381 AELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVD--RYIVDIDDVPFSGGTLLAGHVL 438

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST--VVATHLNHLI 496
            ++  T   T+ G     P     ++W+ +     A I    ++++S   ++  HL  + 
Sbjct: 439 -VSGDTERVTMEGPPGYHPR-AEKSVWVRA--DSAAGIDDTQLMKSSANGLLCDHLMDVC 494

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
            + A    G QE + LL+ V  E  +L   +   VVT   +  VL++LL+++V IR+MR 
Sbjct: 495 EKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRVSIRNMRA 553

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERLLLQALQ 615
           ILE + +    +     +    R+AL   + + +      EVH   L+   E  L   + 
Sbjct: 554 ILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEAELEAQID 613

Query: 616 GGGGLEPGL---ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
            G   EP     ADRL +  +   +R +++    +++    LRP L R LR    +  VL
Sbjct: 614 LGPDGEPRCVLDADRLESLQRGFAARNDVV---RLVVTTAVLRPHLERVLRTLGMRTDVL 670

Query: 673 SNLELS-DNRHIRMTATIG 690
           +  E+  D   +R+ AT+ 
Sbjct: 671 AMEEIPLDEYRVRVIATLA 689


>UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1
           Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK
          Length = 644

 Score =  308 bits (788), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 212/659 (32%), Positives = 346/659 (52%), Gaps = 64/659 (9%)

Query: 30  LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALN 89
           +I+ MMVLP+P  ++D +  FN+A + +VL+  ++ +  L+ + FP ++L  TL RLAL 
Sbjct: 25  VIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVLDISTFPAVILIGTLFRLALT 84

Query: 90  VASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIA 149
           +++TR++L EG      AG+++ AFG F+V GN  +G+++F+I+ ++ F+V+TKGA RIA
Sbjct: 85  ISTTRLVLAEGD-----AGEIISAFGSFVVAGNVVVGLIMFLIVALVQFIVVTKGAERIA 139

Query: 150 EVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDA 209
           EVGARF LD MPGKQ+AID+DL +G I  + A+KRRS++ +E+ F+G+MDGA +FV+GDA
Sbjct: 140 EVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLERESQFFGAMDGAMRFVKGDA 199

Query: 210 IAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVT 269
           IAG++I+ +N++GGL +G+ Q G+S   AA+ Y+LL+IGDGLV+QIP+++++ AAG +VT
Sbjct: 200 IAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGDGLVSQIPSMLMAVAAGTVVT 259

Query: 270 RVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW-W 326
           RVS D+  ++G ++  QL   P  + ++AA+    GL+PG P  V      GL  LA   
Sbjct: 260 RVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPGFPTTVLWPIGIGLATLALVL 319

Query: 327 IRGREQKAPAEPKPVKMA-ENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG 385
           +R R  ++P       MA + N    A  +  +  D           P+V        + 
Sbjct: 320 VRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGD-----------PIVA-TLSAATMS 367

Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445
           R+       A  +G          ++D   AR R+  + V +                  
Sbjct: 368 RLE------ANNLG---------GHLD---ARIRVAARAVGV------------------ 391

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
           A T+P     DP  G + I I+      A +        + ++A  +  ++ +H   +F 
Sbjct: 392 AITVP-TFNADPRMGEDMIHIQVE-NVPAGLISCKADRPAELIAQDIVRIVRRHTGSIFS 449

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
             +A Q L  +   + KL  D V   V+   L  V++ LLD  V +   R +LET+ +  
Sbjct: 450 VDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRLLDSGVTLSQPRGLLETMLKIE 508

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLA 625
           P + DP +L    R AL R I       +  + V+      ER +          E    
Sbjct: 509 PHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSPEWERFVRSYSDASDKTEKEEI 568

Query: 626 D----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN 680
                RL  +T++AL      G  PV+++   LR L    + R   ++ V++  E+  +
Sbjct: 569 SEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQALMIRHNCRVPVVAIEEIDHD 627


>UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11M51_MESSB
          Length = 691

 Score =  307 bits (786), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 213/666 (31%), Positives = 348/666 (52%), Gaps = 49/666 (7%)

Query: 36  VLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRI 95
           +LPLP   +DL+ T N++ SI++LL+++     ++F+ FP +LL TTL RL++++++TR+
Sbjct: 30  ILPLPPAAMDLMITLNVSASIIILLMSLQMHNPVQFSTFPALLLVTTLFRLSISISTTRL 89

Query: 96  ILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARF 155
           IL+EG      AG++VE FG   +GGN A+G+V F+I+ ++ F+VITKGA R+AEVGARF
Sbjct: 90  ILLEGD-----AGRIVETFGQVAMGGNLAVGLVTFLIITVVQFLVITKGADRVAEVGARF 144

Query: 156 VLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILI 215
            LDGMPGKQM+IDAD+ AG + + +A+  R  + +EA  +G+MDGA KFV+GDAIAG++I
Sbjct: 145 TLDGMPGKQMSIDADVRAGNMDQLDARHARQNLEREAKLFGAMDGAMKFVKGDAIAGLVI 204

Query: 216 MVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ 275
            VIN+VGG+ +G+ Q G+  G A   Y LLT+GDGLVAQIPAL+IS AAG +VTRV+   
Sbjct: 205 TVINLVGGVAIGMAQRGVGFGEALSLYALLTVGDGLVAQIPALLISVAAGNMVTRVTNPN 264

Query: 276 --DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333
             D+G ++  Q  +N   ++++  ++ L GLVPG P  +F+   + + G   W   R+  
Sbjct: 265 GMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPGFPTWIFVSVGSAMTGGVIWTIRRQH- 323

Query: 334 APAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLI-PMVDFQQD-GELLGRIR 388
                + V  A+ +  +       Q  +     G +   RLI P   ++ D         
Sbjct: 324 -----RDVLSAQTDWSLRLDLLQRQCAEIAMRTGAKEAVRLILPKEIYKLDVTAFFSAFE 378

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
           ++R   AQE G +P    + +  +  P  Y+I            Y  + LA      A +
Sbjct: 379 AVRISIAQEYG-IPTGYWLFEVDEGSPHSYQI------------YVNQELADCGIFRADS 425

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQI----QGYTVVEASTV-------VATHLNHLIS 497
           L  +A       L   W+    + +  +    Q   + E + V       +  HL  +  
Sbjct: 426 LFVKAHTSYLDALGIPWLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQLLMHLKRVAV 485

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           +    +   Q    +L+ V    P L  DL         +  V++NLL E++P+     I
Sbjct: 486 ERLDVMASLQNITAILNEVQTNNPALVGDLREAASN-NQIAGVIRNLLRERIPVTSRVRI 544

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
           LE + + +  + DP  L   VR+ +   IT++ F     + V+ +   +E L+ + ++  
Sbjct: 545 LEGILKWSQKRPDPGYLAQKVRIEIADFITKR-FAADGFLPVVVVSPTVESLMREGMRNT 603

Query: 618 GG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
                  LEP ++  +  Q ++    +   G  PVL++   +R  +   L      L VL
Sbjct: 604 EEGNFLILEPSISAYIAKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNILYEHGIHLPVL 663

Query: 673 SNLELS 678
           +  E++
Sbjct: 664 AYQEIT 669


>UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group
           RepID=A3P6H9_BURP0
          Length = 705

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 233/704 (33%), Positives = 376/704 (53%), Gaps = 71/704 (10%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
           L++ I+S+M+LPLP   +DLL   NI +S+ +L+V M+       +AFP++LLFTTL RL
Sbjct: 18  LVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRL 77

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           +LN+AST+ IL+      A AG ++E+FG  +VGGN  +G+VVF I+  + F+VI KG+ 
Sbjct: 78  SLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSE 132

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           R+AEVGARF LD +PGKQM+IDADL +GL+  +EA+K+R+ +  E+  +G MDGA KFV+
Sbjct: 133 RVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLAVESQLHGGMDGAMKFVK 192

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           GDAIAG++I +INIV G+ VGV  HGMS G AA  +++L++GD +V+QIP+L++S AAGV
Sbjct: 193 GDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQIPSLLLSVAAGV 252

Query: 267 IVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           ++TRV+ +     + +G+++ +QL S+   +  +A +L     VPG P  +F+L  A L 
Sbjct: 253 MITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALA 312

Query: 322 GLAWWI-----------RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370
              + +           RG+EQ+A      ++  + +         +         VG R
Sbjct: 313 FAGYRLSRKGSPSSGAARGQEQEA------LRAMQRSGAKADVPPILPRAPQFACAVGVR 366

Query: 371 LIPMVDFQQDGELLGRIRSI----RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK--- 423
           + P +     G  L R+       R +   E+G   P V +  +  L  A + +L+    
Sbjct: 367 IAPDL---ASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATFEVLIHDVP 423

Query: 424 --GVEIGSGDAYPGRWLAINPGTAAGTLPGEAT-------------VDPAFGLNAIWIES 468
              V + +  A   +   ++P  AA T   +A              +D A G    WI+ 
Sbjct: 424 HLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPID-ASGQATHWID- 481

Query: 469 ALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLV 528
              E A     +V  A  ++A      I  HA    G QE Q +LD++  + P L  +++
Sbjct: 482 ---EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVL 538

Query: 529 PGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQ 588
             ++  T +  VL+ LL+E++ IR++RTI+E+L      + D   LT  VR  L R +  
Sbjct: 539 K-ILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAH 597

Query: 589 QWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQE---ALSRQE 640
           +   G+  +  +  D   E+ + QA++         L P  A RL+ + Q    A +R +
Sbjct: 598 RAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLVGANARTD 657

Query: 641 MLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
           +      L+ +  +R  + R + R +  L V S  EL ++  +R
Sbjct: 658 I-----ALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELR 696


>UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae
           RepID=Q0B7U0_BURCM
          Length = 749

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 233/625 (37%), Positives = 347/625 (55%), Gaps = 60/625 (9%)

Query: 21  ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80
            LAG   I+ ++++ +LPLP   LD + + N+A S+++L V+ +    + F++FP +LLF
Sbjct: 50  FLAG--FIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFSSFPALLLF 107

Query: 81  TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140
           TTL RLALN+AS ++IL+      A AG V++AFG  +VG N  +G VVF+++ ++ F+V
Sbjct: 108 TTLFRLALNIASCKLILLH-----ANAGHVIDAFGRLVVGNNVVVGGVVFLVIAVVQFIV 162

Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200
           I KG+ R+AEVGARF LD MPGKQM+IDADL AG+I  DEA++RR  + QE+  +G+MDG
Sbjct: 163 IAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQESQMHGAMDG 222

Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260
           A KFV+GDAIAG++I  INIV G+ VG L HGM +G A + Y +LT+GDG+ +QIP+L++
Sbjct: 223 AMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMASQIPSLLV 282

Query: 261 STAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316
           S AAG++ TRV+T     + +GEQ+  QL ++P  +L++A VL    +VPG P   F L 
Sbjct: 283 SIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGFPKWSFALI 342

Query: 317 TAGLLGLAWWIRGREQKAPA----------------EPKPVKMAENNTVVEATWNDVQLE 360
             GL   A     R+  AP+                +P  V  A   T + A    V L 
Sbjct: 343 ALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA----VSLS 398

Query: 361 DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRI 420
           D L   +              +L   + S + +   ++G + P + + D+       YRI
Sbjct: 399 DDLRTTLNL-----------AQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRI 447

Query: 421 LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQI 476
            ++ V    G   PG WL  +       LP  A   P  AFG    A+WI    K     
Sbjct: 448 YLQDVLAAHGALKPG-WLLWD---GVAPLPERAERQPAEAFGPFATALWI----KPDGAA 499

Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536
                + +   +A H+  ++ QHA EL G QE Q L+  V +E P+L  +L   +V L  
Sbjct: 500 PDGKWLTSEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELTR-LVPLQR 558

Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPH-ELTAVVRVALGRAITQQWFPGKD 595
           + +VL+ LL E+VPIR++R I E+L   AP + D    L  +VRV L R IT +      
Sbjct: 559 VTEVLRRLLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAAR 618

Query: 596 EVHVI----GLDTPLERLLLQALQG 616
           ++ V+     L   +E  +++  QG
Sbjct: 619 QLRVVLFEQNLQERIESAVMRTKQG 643


>UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P7_DESVU
          Length = 398

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/262 (51%), Positives = 202/262 (77%), Gaps = 6/262 (2%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           M+LPLP  ++D L   N+ALS ++L+++M+ +  L+F+ FPT+LLFTTL R+ LN+ +TR
Sbjct: 33  MILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTR 92

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
           +IL++     A AG+++  FG + +GGNF +G VVFVIL I+ F+VI KGA R+AEVGAR
Sbjct: 93  LILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGAR 147

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD MPGKQM+IDAD+ AG+I  +EA++RR+ V+QE+  YG+MDGA KFV+GD+IAG++
Sbjct: 148 FTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMI 207

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV-ST 273
           + ++NIVGG ++G+ QHGM+ G A  +Y +LTIGDGLV+QIP+L++S +AG+++TR   +
Sbjct: 208 VALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITRSGDS 267

Query: 274 DQDVGEQMVNQLFSNPSVMLLS 295
             +VG Q+  Q+F  P  +L++
Sbjct: 268 GGNVGAQIGGQIFGQPKALLMA 289


>UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli
           RepID=B3Q2A2_RHIE6
          Length = 643

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 151/361 (41%), Positives = 236/361 (65%), Gaps = 11/361 (3%)

Query: 31  ILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNV 90
           +++M+VLPLP  +LD+L  FN++ + +VL+   + +  LE + FP ++L  TL RLAL +
Sbjct: 26  VVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLKSVLEISTFPAVILIGTLFRLALTI 85

Query: 91  ASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAE 150
           +STR++L +     A AG+++ AFG F+V GN  +G+++F+I+ ++ F+V+TKGA RIAE
Sbjct: 86  SSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVGLIIFLIVALVQFIVVTKGAERIAE 140

Query: 151 VGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAI 210
           VGARF LD MPGKQ+AID+DL  G I  + A+KRRS + QE+ F+G+MDGA +FV+GDA+
Sbjct: 141 VGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRSRLEQESQFFGAMDGAMRFVKGDAV 200

Query: 211 AGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTR 270
           AG++I+ +N++GGL +G+ Q G+S   AA  YTLL+IGDGLV+QIP+++++ +AG++VTR
Sbjct: 201 AGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLSIGDGLVSQIPSILMAVSAGIVVTR 260

Query: 271 VSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328
           VS D +  +G  +  +LF  P  + ++AA+    G VPG P  V       L GLA+ + 
Sbjct: 261 VSDDGNGSLGSDIGRELFREPRALAIAAALTICAGFVPGFPTGVLGAIGLCLAGLAFMVH 320

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL-GRI 387
            R +  PA        E+        +  +  D +   V    +  ++  + GE+L GRI
Sbjct: 321 -RRRAGPAAAGSANAVESAN--SYPLDRTKYGDPVIATVAVETLARLEAMRLGEMLDGRI 377

Query: 388 R 388
           R
Sbjct: 378 R 378


>UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU
          Length = 645

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 223/661 (33%), Positives = 355/661 (53%), Gaps = 76/661 (11%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
           +M+LPLP  ++D L   NI LS+++L+V M+   ++  ++FP++LLFTTLLRL+LN+AST
Sbjct: 30  LMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAST 89

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           + IL+      A AG ++E+FG  +VGGN  +G+VVF+I+  + F+VI KG+ R+AEVGA
Sbjct: 90  KSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGA 144

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD MPGKQM+IDADL  G +  DEA+++R+ +  E+  +G MDGA KFV+GDAIAG+
Sbjct: 145 RFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGL 204

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I ++NI+ G++VGV  HGM+ G AA  + +L++GD +V+QI +L+IS AAGV++TRV+ 
Sbjct: 205 VITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVAN 264

Query: 274 DQD-----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--W 326
           + +     +G  +  QL SN   ++ ++ +L     VPG P ++FLL  A +    +  W
Sbjct: 265 ENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTIW 324

Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATW---NDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383
            + R+     + K    +      EA     N       L M +  +L  ++D      L
Sbjct: 325 RKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLD---PARL 381

Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443
              I S R++  + +G   P + I     LQ  +Y +L+  V                P 
Sbjct: 382 DQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDV----------------PE 425

Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA-AE 502
           T A     E T D         +++AL  QA                    +   HA A 
Sbjct: 426 TRAEL---ENTDD---------MQAALARQA--------------------ISPLHARAH 453

Query: 503 LF-GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           LF G QE Q +L++VA + P L  + V   +    +  VL+ LL+E++P+R++++ILE+L
Sbjct: 454 LFVGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESL 512

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618
               P + D   LT  VR  LGR +      G  ++  + LD  +E+L+ Q+++      
Sbjct: 513 VVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGN 572

Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
              L P  A++L+ Q +  +        P  ++ +  +R  + R +   L  L V S  E
Sbjct: 573 FLALPPEQANQLVEQVERIVGDHAQ--HPLAVVASMDVRRYVRRMIEARLTWLQVYSFQE 630

Query: 677 L 677
           L
Sbjct: 631 L 631


>UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae
           RepID=Q1D0P1_MYXXD
          Length = 688

 Score =  284 bits (726), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 236/677 (34%), Positives = 366/677 (54%), Gaps = 57/677 (8%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           +++PLPA++LD     N+A S+ +L+ A+  +  L+  +FPT+LLFTTL RLALNV+STR
Sbjct: 30  LIIPLPAWLLDAGLAVNLAASVALLVAALRARDALKVTSFPTLLLFTTLFRLALNVSSTR 89

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
           + L EGH     AG V++AFG F+V G++ +G VVF IL ++  +V+TKGA R+AEV AR
Sbjct: 90  LALAEGH-----AGDVIQAFGEFVVRGDYVVGAVVFAILTLVQLLVVTKGAERVAEVSAR 144

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD MPGKQM+IDADL AG I + +A++RR ++ +E+  +G+MDGA KFV+GD IAG++
Sbjct: 145 FTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLERESQMFGAMDGAMKFVKGDVIAGLV 204

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274
           I+ +N++GG ++GVLQ GM +  AA ++ L+ IGDGLV+Q+P+L I+ AAG++VTRV+++
Sbjct: 205 IVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGDGLVSQVPSLCIAVAAGLVVTRVASE 264

Query: 275 QD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF------------LLFTAG 319
           ++   +G ++  Q F     + + A +   L L+PGMP++ F            +L  AG
Sbjct: 265 KEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMPGMPHVTFLLLAGGLGGLGHVLSRAG 324

Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           +  +       E+KA A    V         E+  + V +   L +++   L  + + + 
Sbjct: 325 VPKV-------EEKAGAPADGVAPGAAGAPPESAASPVGV-SPLTLDMAPDLTVLAEAEG 376

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRILMKGVEIGSGDAYPGRWL 438
              +   +  +R +   E+G   P + +R     L P  YR+L+  V  G G   PG   
Sbjct: 377 AAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVLVDEVPAGGGQVLPGALY 436

Query: 439 AINPGTAAGTL--PGEATVDPAFGLNAIWI-ESA--LKEQAQIQGYTVVEASTVVATHLN 493
           A+ P      L    EA  +P+ G     I ESA  L E AQ+    +     +V+ H+ 
Sbjct: 437 ALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQV---PLRRPGELVSDHVR 493

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            ++   AA+L G Q+ Q LL+ +  + P L ++ +   V L  L  VL+ LL E V IRD
Sbjct: 494 AILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTDVLRKLLQEGVSIRD 552

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           +R ILE L      + D   L    R AL R ++ ++ P    ++   +D  +E +L   
Sbjct: 553 LRAILEALVSPT-TEGDAVALAERCRQALRRYLSHKFAP-TGPLYAYLVDPEVEEVLR-- 608

Query: 614 LQGGGGLEPGLADRLLAQTQEALS------RQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
                    G+  R LA   E ++      RQ       VLL    +R  L R    + P
Sbjct: 609 ---------GMGPRGLAPDPERVAEILEGVRQVATEGRAVLLTAPDVRRPLRRLCEGAFP 659

Query: 668 QLVVLSNLELSDNRHIR 684
            + VL+  EL     IR
Sbjct: 660 DVAVLTYGELDGALQIR 676


>UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp.
           SKA58 RepID=Q1NCU5_9SPHN
          Length = 654

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/304 (47%), Positives = 215/304 (70%), Gaps = 8/304 (2%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           + ++ I+++++LPLPA ++D+L   NIA+ +++LL  +   + L+F+ FPT+LL +TL R
Sbjct: 23  VAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTLHITKPLDFSTFPTVLLLSTLFR 82

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+L++A+TR+IL       A  G +++ FG  + GGN  +G+VVF+I+ ++ F+VI+KGA
Sbjct: 83  LSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNLIVGLVVFLIVTVVQFIVISKGA 137

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++RR  +  E+  +GS+DGA KFV
Sbjct: 138 ERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLELESKLHGSLDGAMKFV 197

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIA I+I++IN+VGGL VGV  HGM  G A + +++LTIGDGLVAQIPAL  + AAG
Sbjct: 198 KGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGDGLVAQIPALFSAMAAG 257

Query: 266 VIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           ++VTR    S D  +G  +V Q+ S P V+  +A +  L+ L+PG P  VF+     L  
Sbjct: 258 LLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIPGFPAAVFIGIAFALGS 317

Query: 323 LAWW 326
            A W
Sbjct: 318 AAAW 321



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
           +A  +  L+ ++AA   G QE   +L+R+  + P L +++V  V +   + +VL+ L +E
Sbjct: 437 IAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVVRAVSS-PRIAEVLRLLAEE 495

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP-GKDEVHVIGLDTPL 606
           +V +R++R +LE +AE    + +   +    RVAL R I       G+  V V+G    L
Sbjct: 496 EVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHMADGRFPVLVVG--GRL 553

Query: 607 ERLLLQALQ 615
           ER     LQ
Sbjct: 554 ERFFRDNLQ 562


>UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B1T6S7_9BURK
          Length = 679

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 223/685 (32%), Positives = 346/685 (50%), Gaps = 62/685 (9%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I +L +L +++ PLP   LD++   N+ +S+++L ++++    L  + FPT+LL  TL R
Sbjct: 24  IAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTFPTLLLVATLFR 83

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L LN+A+TR IL+ G+     AG ++  FG  +VGG+  +G VVF+I+ II F+V+ KGA
Sbjct: 84  LGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIAIIQFVVVAKGA 138

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + FYG+MDGASKFV
Sbjct: 139 DRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGASKFV 198

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAG+LI ++N+VGG+++G   +G  +   A  YT+LT+GDGLV+QIP+L+IS AAG
Sbjct: 199 KGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLISFAAG 258

Query: 266 VIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           +++TRV+   +   VG  + +Q+ S P  +  +A V     LVPG P L FL     L  
Sbjct: 259 ILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGVLLAL 318

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQ------LEDSLGMEV--GYRLIPM 374
           LA  I          P+   M  +  +    W   +      +E  LG  V    RL P 
Sbjct: 319 LAALI----------PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRVRLAPE 368

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           +  Q     L R+    ++  +E G   P + +  +  L    Y + +  V I  G    
Sbjct: 369 LFDQLKPLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQLER 428

Query: 435 GRWLAINP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
            +       G +  +LPG A  +                       + +E   ++   + 
Sbjct: 429 TQGEGERKRGLSLPSLPGRAGAETG---------------------SQMEIEAMLVGRIG 467

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
             I        G QEA  L D +++  P+L  +++   + L     VL  LL   V IR+
Sbjct: 468 DAICAKPWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTGVGIRN 526

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           +R I E L + +   +D   L +  R AL   I+ QW   +  + +  L   LE +L Q 
Sbjct: 527 LRAIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQR 586

Query: 614 LQGGGGL---------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664
           L   G +         +     +++A  Q   + ++  GA  VL+    LR  +   LR 
Sbjct: 587 LIASGQIKFIDLQVDEQHAFVQQVIADMQT--TWRDHPGA--VLVTGQDLRRSVEALLRG 642

Query: 665 SLPQLVVLSNLELSDNRHIRMTATI 689
               + VL+  E+SD    R+  TI
Sbjct: 643 GERGVTVLAVEEISDEVTYRVLHTI 667


>UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
           RepID=A8DVR9_NEMVE
          Length = 383

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219
           MPG+QM+IDADLN G I + EA++RR  + +EA FYG+MDGASKFV+GDAIAGI+I++IN
Sbjct: 1   MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60

Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279
           I+GGL++GV+QH +    A ++Y+LLTIGDG+V Q+PAL+I+   G+IVTR ++D ++ +
Sbjct: 61  IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120

Query: 280 QMVNQLFSNPSVMLL-SAAVLGLLGL--VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336
           +++ Q+ S P  +LL  AA+ GLL    +P +P LV +   A +  + +    R     A
Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVY----RNASNSA 176

Query: 337 EPKPVKMAENNTVV---------EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRI 387
           E         +            +  +  +Q+E  + + VG     +V  Q    L+ RI
Sbjct: 177 EDGTAPADAQDAAQPADAAQKGEDDPYASLQVE-PIEVHVGSEWAALVS-QPGSVLMDRI 234

Query: 388 RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG 447
            + RK+ AQ++G + P V  +D   L   RY I + GV  G G+A   R LAI+P     
Sbjct: 235 ATFRKQHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTD 294

Query: 448 TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQ 507
            +PGE T DP +GL A+WIE   +  A +  +T+V+A TV  THL  ++ + +A L  R 
Sbjct: 295 GMPGEPTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRA 354

Query: 508 EAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
           E  +LL+RV Q    L E+L+P V++++
Sbjct: 355 EVDRLLNRVRQNQASLVEELIPTVLSVS 382


>UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH
          Length = 628

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 181/674 (26%), Positives = 335/674 (49%), Gaps = 80/674 (11%)

Query: 29  LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88
            L+ +++++ LP  ++D     +   S ++L++ +   + L+    PT++L  T  RL L
Sbjct: 21  FLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKVTFLPTMVLLLTTFRLLL 80

Query: 89  NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148
           ++A+TR I+          G+V+E  G F++GGN   G+++FVI+ I+ F+V+TKG  R+
Sbjct: 81  SIATTRNII-----ANEDVGRVIETIGEFVMGGNLISGLLIFVIITIVQFLVVTKGGERV 135

Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208
           AEVGARF LD +PGKQM ID DL +GLI  ++A+K R+++  E   +GS+DGA KFV+GD
Sbjct: 136 AEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTENKLFGSLDGAMKFVKGD 195

Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268
           AIAGILI ++N+ GG+ VG+ Q  +S+  + + +++LTIGDGLV+QIP+L++S A GV +
Sbjct: 196 AIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGLVSQIPSLLLSMACGVYL 255

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--PNLVFLLFTAGLL----G 322
           TR+   +D     ++Q+ +       S  V+G++ ++ G+  P L+++     +L     
Sbjct: 256 TRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNPTLMYVCLPLAVLCIVMA 315

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382
           L  W +        + +P    E + V E+            ++  +R     D Q    
Sbjct: 316 LLLWKKNENTAVAVKVEP----EGSGVFES------------LKFVFR-----DAQYQHL 354

Query: 383 LLGRIRSIRKK-FAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
           +  R++ +  + + Q +G   P V ++ ++D+  A Y   + GV+              +
Sbjct: 355 IKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGVQT----------YQFS 399

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
             ++ G +  E   D  F L+                    + S  +   +++ I     
Sbjct: 400 QNSSEGIV--EILNDDVFNLHD-------------------DLSANLDEIISYFIQTRLV 438

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           E +  Q +  ++  +A +  ++ +  +   V L  +H VL+ ++       D  +  E+L
Sbjct: 439 EKYNLQYSSNIVAELASQ-SEIMKSEIDSAVGLNRVHDVLKQMIRSPEFYLDRVSFFESL 497

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621
              + ++SDP      +R      IT +      ++HV+ L   L     + + G    E
Sbjct: 498 IYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPELT----EEISGYVAGE 553

Query: 622 PGLADRLLAQTQEALSRQ--EMLGAP---PVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
               +RL+ + Q AL  +   ++ +    PVL+VN     L+  F+++ +  L+V S+ +
Sbjct: 554 FEDFERLI-EIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQVMSTLLVCSHTD 612

Query: 677 LSDNRHIRMTATIG 690
           + DN  I  +  I 
Sbjct: 613 IVDNNCISSSEVIN 626


>UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9
           Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO
          Length = 634

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 208/347 (59%), Gaps = 17/347 (4%)

Query: 4   LAAMLRLPANLKSTQWQILAGP--ILILLILSMMVL-PLPAFILDLLFTFNIALSIMVLL 60
           + A LRL ++LK  +  +L  P  +LI  +L  ++L  LP  ++D     +   S ++L+
Sbjct: 1   MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           + +     L+    PT++L  T  RL L++A+TR I+          G+V+E  G F++G
Sbjct: 60  IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNII-----ANEDVGQVIETVGQFVMG 114

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GN   G+++F+I+ I+ F+V+TKG  R+AEVGARF LD +PGKQM ID DL +GLI  ++
Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           A+K R+++  E   +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q  +S+  +  
Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298
            +++LT+GDGLV+QIP+L++S A GV +TR+    D     + QL +       S     
Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294

Query: 299 LGLLGLVPGMPNLVFLLFTAGLL--GLAWWIRGREQKAPA----EPK 339
           + ++ L    PNL+++     +L  GLA W+  ++    A    EPK
Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPK 341



 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 17/225 (7%)

Query: 476 IQGYTVVEASTVVATHLNHLIS----QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531
           IQ   +  AS  VA++LN++IS        E +  Q +  ++  +AQ+  ++ +  +   
Sbjct: 416 IQNDELFVASADVASNLNNIISYFIHHRFIEKYNLQYSNNIVAGLAQQ-SEIMKSEIDSA 474

Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591
           V L  +H VL+ ++       D  +  E L   + ++SDP      +R      IT    
Sbjct: 475 VGLNRVHDVLKQMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLL 534

Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEM------LGAP 645
             + +V+V+ L TP    L + + G    E    DRL+A  Q  L R E+       G  
Sbjct: 535 NQEGKVNVVLL-TP---ELTEEISGFVAGEFDDVDRLIA-VQTGL-RNEIKRLLVQYGVK 588

Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           PV++VN     ++  F ++ +  ++V S+ ++ ++  I  + TI 
Sbjct: 589 PVVVVNENELNVVKAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633


>UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria
           MEX-5 RepID=B1TCM3_9BURK
          Length = 349

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/314 (42%), Positives = 179/314 (57%), Gaps = 13/314 (4%)

Query: 386 RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTA 445
           RI + R ++A E GF+ P V  RD+  L P  Y++ + G   G    YPGR LAI+P   
Sbjct: 20  RIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLAIHPAGV 79

Query: 446 AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
            G LPG AT +PAFGL A+WI+   +++A+  G+T V+  T + TH+  LI  HAA LFG
Sbjct: 80  TGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTHAARLFG 139

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
           R E   LLD V    P L +++VP V+ +  + +VLQ LL E+VPIRD+  I++TLA+ A
Sbjct: 140 RAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQTLADVA 199

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----L 620
             + DP  L   VR  LG AI Q+    +D + V+ LD  LE  + + L G  G     L
Sbjct: 200 RHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADGHGTHVL 259

Query: 621 EPGLAD----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
           +P LA+    RLLA T E + RQ   G  P LL    +R  L  F RR  P+LVVLS  E
Sbjct: 260 DPRLAEPFLGRLLAHT-ETMMRQ---GHTPALLCRPDIRRALKTFSRRVAPRLVVLSINE 315

Query: 677 LSDNRHIRMTATIG 690
           + D   +R  AT+G
Sbjct: 316 VPDAIPLRAFATVG 329


>UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6G3X4_9DELT
          Length = 602

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/292 (40%), Positives = 182/292 (62%), Gaps = 11/292 (3%)

Query: 54  LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113
            +++VL+  +  +R L+FAAFP +LL  T  RL LNV++TR+IL +     A AG+V++A
Sbjct: 37  CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91

Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173
           F   +V G+  +G V+F ++  I ++VI +GA R+AEV ARF LD +PG+Q+AID +   
Sbjct: 92  FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151

Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233
           G IG DEA+ RR+E+ + ADF+G MDG  + V+GDA+ G++I  IN+VGG  +G ++ G 
Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIG-MRQGA 210

Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293
            +  +   Y  L +GDGL+AQ+PA++++ AA ++V+RV          +      P ++L
Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345
             A +L +L  VPGMP L F     GLL +A ++     +APA  K +   E
Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYL----TRAPAAAKKLASPE 317


>UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645
           RepID=A3ZLT3_9PLAN
          Length = 489

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 9/348 (2%)

Query: 344 AENNTVVEAT-------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396
           AE    VEA+       W      D L +EVG  LI +V   +  +   R+ ++R + A 
Sbjct: 97  AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIV-APESKDFFDRMTAVRCQLAD 155

Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456
            +G + P + +RDN  L    YRIL+   E+      PG+++A++ GTA  TL G   VD
Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215

Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
           P FG   IWI +  + +A+  GY V+E S ++ THL   + +H+ E+    + ++L++  
Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
             +     E+L    ++L+T+H VL  LL+E V I++   +LETL  H     D   L A
Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635
            VRV LGR I Q++      VH IGL+  LE  LL+    G G +     +RL+    ++
Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395

Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
             + E    P  L+ +  LR  L R +   LP++ VLS  E+  N  I
Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443


>UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae
           RepID=C4PLR3_CHLTZ
          Length = 605

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 176/305 (57%), Gaps = 15/305 (4%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N + + W+I+A P  IL  L   +  LP +++D     N+A S+ ++      + +    
Sbjct: 30  NFRGSSWKIVAIPSCILFTL---IFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FP++LL+  LLRL LN+ASTR IL  G      A  ++ A G+F   G+  + + V ++
Sbjct: 87  IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG   A  ++S + +E+
Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           D++ +M+G  +FV+GDAI   +++ +NI+  L +G   H   +        L  +GD LV
Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDLW-------LTVLGDALV 254

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +QIPAL+ S AA  ++ +V   + + + +++    +    L  A +L  +  +PG P  +
Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314

Query: 313 FLLFT 317
            L F+
Sbjct: 315 ILGFS 319



 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I Q A E    +   +L+D   +      E+++P  ++  +L  +L+ L+ E+V +    
Sbjct: 410 IRQLAPETISERFVTRLVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSLHLFP 469

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
            ILE +  +     +  EL   VR  LG+ I    +  +D + VI +D+ +E+ +  + +
Sbjct: 470 KILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVRDSQE 529

Query: 616 GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNL 675
               +   L ++++AQ +  L   E  G    ++     R  L R +    P L+VL++ 
Sbjct: 530 ---KVVLDLNEKVVAQVKHLLRVGE--GNFRAIVTGSETRKELKRIVDPYFPDLLVLAHS 584

Query: 676 ELSDN 680
           EL + 
Sbjct: 585 ELPEE 589


>UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae
           RepID=Q9Z8I0_CHLPN
          Length = 582

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 170/320 (53%), Gaps = 23/320 (7%)

Query: 29  LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88
           L IL ++ LPLP  +LD     + ALS++ +        +     FP   L+  LLRL L
Sbjct: 16  LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75

Query: 89  NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148
           N+ASTR I+  G      A  ++ + G F   G+        ++L  +NF++++KG+ RI
Sbjct: 76  NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130

Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208
           AEV +RF L+ +P KQMA+D+DL +G       KK+++ + +E DF+ +M+G  +FV+GD
Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190

Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268
           AI   +++++N+V    V  L +  + G+A E      +GD LV+Q+PAL+ S AA  ++
Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL----LGLVPGMPNLVFLLFTAGLLGLA 324
           +++    D  E ++N LF     +     V+ L    L  +P  P      F   LL   
Sbjct: 246 SKI----DKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPK-----FPIVLLASL 296

Query: 325 WWIRGREQKAPAEPKPVKMA 344
            W+  R+++  +E   ++ A
Sbjct: 297 LWLAYRKEEPASEDSCIERA 316


>UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU
          Length = 223

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 10/216 (4%)

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           VE   +    L+ L++ H  +L  R+   Q+L + +   PKL E+LVPGV++L+ L KVL
Sbjct: 8   VEPDALAQLPLDELVACHECDLLLRKPVLQVLSKAS---PKLAEELVPGVISLSGLLKVL 64

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q LL E+VP+RD+R+I E +A +A    D   L AVVRV L RAI Q     + E+ VI 
Sbjct: 65  QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124

Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           L+  LE++LL +LQ  G        LEP +A++L     EA  RQEM G P +LLV   +
Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R +LSRF R ++P L VL+  E+ DN+ + + AT+G
Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220


>UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of
           Sitophilus zeamais RepID=Q8GAT5_9ENTR
          Length = 340

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 130/197 (65%), Gaps = 6/197 (3%)

Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224
           M+IDADL AG++ ED  KKRR  +  E+  YG++DGA KF++GDAIAGI+I+ +N++GG+
Sbjct: 1   MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60

Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282
            VG++QHGM +  A   YT L+IGD LVAQIPAL+IS + G IVTRV  + + ++G +++
Sbjct: 61  SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPK 339
             LF+N S ++++A +   +G +PG P  VF++ +A L+ + +   W R R +    E  
Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKW-RNRHKNKSGESH 179

Query: 340 PVKMAENNTVVEATWND 356
             K A++    EA   D
Sbjct: 180 REKGADDEAQSEAVTID 196


>UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella
           melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME
          Length = 512

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 187/386 (48%), Gaps = 20/386 (5%)

Query: 307 GMPNLVFLLFTAGL--LGLA---WWIRGREQKAPAEPKPVKMAEN--NTVVEATWNDVQL 359
           G+P   F L    +  +G+A      R RE  A    K  + AE      V+A+    Q+
Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
           E  LG ++  RLI   +     EL  R+  +R+KFAQE GF+ P + + D++ L P  YR
Sbjct: 181 ELCLGKQLSARLIASQE-----ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYR 235

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
           I + G  + S +   G  L +       ++PGE   +PAFG+ A  +        + +GY
Sbjct: 236 IKIHGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGY 295

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
             V+  +V+ THL+ ++  + A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  
Sbjct: 296 MTVDNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQA 355

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VL+ LL E++ IR++  ILE +AE AP+   P  +   VR+ + + I          ++V
Sbjct: 356 VLKLLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGD-LSDNGVLNV 414

Query: 600 IGLDTPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           + L    + +  Q+L+           ++P L ++   +   A+ +    G   VL+ + 
Sbjct: 415 LRLGNRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSP 474

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELS 678
             RP +   + R    L VLS++E++
Sbjct: 475 EARPYIRMIIERLFATLPVLSHVEIA 500


>UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum
           EbN1 RepID=Q5P877_AZOSE
          Length = 206

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 91/109 (83%), Gaps = 6/109 (5%)

Query: 3   NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62
           NL A++  PANL+     +L  P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVA
Sbjct: 6   NLRALMA-PANLR-----MLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVA 59

Query: 63  MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111
           M+T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG  AAGKV+
Sbjct: 60  MYTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108



 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 72/117 (61%), Gaps = 5/117 (4%)

Query: 580 VALGRAITQQWFPGKDEV-HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQE 634
           VA  R +  +   G D    V+ LD  LER+L QA+  GGG    +EP LAD LL    E
Sbjct: 87  VASTRIVLLEGHTGPDAAGKVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAE 146

Query: 635 ALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
              RQE +G PPVLLV   LR LLSRFLRR++P L V++N E+ + R IR+TA +GG
Sbjct: 147 VAQRQEDIGLPPVLLVPPQLRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203


>UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria
          RepID=C0AUZ1_9ENTR
          Length = 111

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 74/78 (94%)

Query: 1  MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
          M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL
Sbjct: 1  MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60

Query: 61 VAMFTQRTLEFAAFPTIL 78
          VAMFT+RTL+FAAFPTI 
Sbjct: 61 VAMFTKRTLDFAAFPTIF 78


>UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P6_DESVU
          Length = 298

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 6/199 (3%)

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
           + ++A HL+ ++S+HA+   G QEA+ LLDR+ +  P L  + V  ++ +  + ++ Q L
Sbjct: 88  ARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLVRE-VTRLLPVQRIAEIFQRL 146

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           + E+V IRD+R+ILE L E +  + D   LT  VR AL R I+     G++ +  I LD 
Sbjct: 147 VQEQVSIRDLRSILEALIEWSAKEKDTVMLTEYVRSALKRQISYMHSRGQNMLPAILLDP 206

Query: 605 PLERLLLQAL-QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
            +E  + +A+ Q   G    LEP + +R +    +A          PV++ +  +R  + 
Sbjct: 207 GVEETIRKAVRQTSAGAFLALEPAVTERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVR 266

Query: 660 RFLRRSLPQLVVLSNLELS 678
           R +      L V+S  EL+
Sbjct: 267 RLIEGDHYTLAVMSYQELT 285


>UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis
           RepID=Q1CE51_YERPN
          Length = 348

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 465 WIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLT 524
           W+++    QA+  G   VE    + T L  +  ++ AE  G QE + L+D +     +L 
Sbjct: 113 WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETRYLMDAMEGRYGELV 172

Query: 525 EDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGR 584
           ++L    + +  + ++LQ L++E + IRD+RTI   L   AP + D   LT  VR+AL R
Sbjct: 173 KEL-QRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRR 231

Query: 585 AITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGGGLEPGLADR----LLAQTQEALSRQ 639
            + +++   K  + V+ L   +E L+  ++ Q   G    L +R    +L + + A +  
Sbjct: 232 HLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAEN 291

Query: 640 EMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +      VLL    +R  + + + R L  L VLS  EL D  ++++  TI
Sbjct: 292 Q----DAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTI 337


>UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar
           Gallinarum RepID=Q58FD6_SALGL
          Length = 132

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 4/117 (3%)

Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293
             A  +Y++L+IGDGL  QIP+L+IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++
Sbjct: 1   SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV 350
           L+A VL LL L+PG P +    F+A LL L   I  R +K+      V+  E +++V
Sbjct: 61  LTAVVLMLLALIPGFPFITLAFFSA-LLALP-IILIRRKKSVVSANGVEAPEKDSMV 115


>UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1
           Tax=Sordaria macrospora RepID=D1ZYM6_SORMA
          Length = 102

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 438 LAINPGTA-AGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
           LA++ G A  G L G+   DP FGL+AIWI+    + A   GY VV+A TV+ATHLNH++
Sbjct: 8   LALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHVL 67

Query: 497 SQHAAELFGRQEAQQLLD 514
           + +A EL G  E Q LLD
Sbjct: 68  TVNATELLGPDEVQALLD 85


>UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter
           sp. MED105 RepID=A6GSW7_9BURK
          Length = 106

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 64/102 (62%), Gaps = 4/102 (3%)

Query: 595 DEVHVIGLDTPLERLLLQALQGGG----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650
           ++++V+ ++  LE+++  A    G    G++P LA+ L  QT +A  RQE LG  PVLLV
Sbjct: 4   EDLNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLV 63

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
             ALR  ++R L+R+ P L VLS+ E+ +NR IR+   +G K
Sbjct: 64  PDALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105


>UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1
           Tax=Sordaria macrospora RepID=D1ZYL5_SORMA
          Length = 168

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 22/180 (12%)

Query: 229 LQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSN 288
           ++   ++GH    +TLLTIGDG+  Q+PAL+IS A G+IVTR ++D+++  ++  QL S 
Sbjct: 1   MEWSEALGH----FTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSV 56

Query: 289 PSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT 348
           P + L+ AAVL  L L+PGMP    ++   G +    W R R+  A A  +PV       
Sbjct: 57  PRIPLIVAAVLAALLLLPGMPKWPIVVI--GTIAFVAWRRIRKAAAEAAAEPVD------ 108

Query: 349 VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE---LLGRIRSIRKKFAQEMGF-LPPV 404
                  +V  E +    +  RL   +     GE   ++ RI  +R+   ++ G   PP 
Sbjct: 109 ------EEVAAESTASPPLEIRLGEALSGAWAGEGALVMDRIAGLRRVHEEQFGLPFPPC 162


>UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3
           Tax=Salmonella enterica subsp. enterica serovar Typhi
           RepID=UPI000190D087
          Length = 290

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 1/204 (0%)

Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449
           +R +F  + G   P V +RD   L      +L+  + +     Y      +N      + 
Sbjct: 63  LRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSF 122

Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509
               T+         W+     E+ +  GY +  A   +   L   ++++  E FG QE 
Sbjct: 123 GINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQET 182

Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569
           + +LD++  + P L ++++    T+  + +VLQ LL E+V +R+M+ I+E LA  AP + 
Sbjct: 183 KHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREK 241

Query: 570 DPHELTAVVRVALGRAITQQWFPG 593
           D   L   +R A+ R I  ++  G
Sbjct: 242 DVINLVEHIRGAMARYICHKFANG 265


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce...   825   0.0  
UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac...   799   0.0  
UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri...   794   0.0  
UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac...   791   0.0  
UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic...   786   0.0  
UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm...   785   0.0  
UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam...   783   0.0  
UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del...   782   0.0  
UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod...   779   0.0  
UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente...   774   0.0  
UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep...   773   0.0  
UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   768   0.0  
UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2...   768   0.0  
UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni...   765   0.0  
UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact...   765   0.0  
UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   758   0.0  
UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact...   755   0.0  
UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact...   752   0.0  
UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo...   750   0.0  
UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n...   750   0.0  
UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact...   750   0.0  
UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-...   749   0.0  
UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot...   747   0.0  
UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan...   746   0.0  
UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac...   742   0.0  
UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir...   738   0.0  
UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui...   735   0.0  
UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The...   731   0.0  
UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm...   730   0.0  
UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo...   728   0.0  
UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr...   725   0.0  
UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib...   724   0.0  
UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali...   724   0.0  
UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps...   723   0.0  
UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta...   722   0.0  
UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid...   722   0.0  
UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp...   720   0.0  
UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet...   715   0.0  
UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther...   715   0.0  
UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi...   714   0.0  
UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp...   708   0.0  
UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr...   707   0.0  
UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap...   705   0.0  
UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto...   705   0.0  
UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel...   703   0.0  
UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac...   701   0.0  
UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam...   697   0.0  
UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n...   695   0.0  
UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   694   0.0  
UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae...   692   0.0  
UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   691   0.0  
UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt...   682   0.0  
UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n...   678   0.0  
UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact...   676   0.0  
UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor...   674   0.0  
UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=...   669   0.0  
UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco...   667   0.0  
UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax...   663   0.0  
UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T...   663   0.0  
UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys...   658   0.0  
UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep...   656   0.0  
UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O...   652   0.0  
UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den...   651   0.0  
UniRef50_Q057S2 Type III protein export, membrane component n=1 ...   650   0.0  
UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho...   648   0.0  
UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot...   648   0.0  
UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz...   647   0.0  
UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu...   646   0.0  
UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA...   645   0.0  
UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI...   634   e-180
UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=...   633   e-180
UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus...   629   e-178
UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco...   626   e-178
UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein...   625   e-177
UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G...   623   e-177
UniRef50_P35656 Hypersensitivity response secretion protein hrcV...   618   e-175
UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero...   618   e-175
UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8...   617   e-175
UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s...   613   e-174
UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax...   611   e-173
UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6   608   e-172
UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax...   607   e-172
UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea...   604   e-171
UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr...   602   e-170
UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp...   601   e-170
UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2...   579   e-163
UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta...   574   e-162
UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ...   572   e-161
UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho...   552   e-155
UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh...   546   e-153
UniRef50_B9JJ70 Type III secretory system inner memberane protei...   546   e-153
UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax...   524   e-147
UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob...   507   e-142
UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho...   485   e-135
UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH               462   e-128
UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf...   403   e-110
UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax...   377   e-103
UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell...   371   e-101
UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil...   365   3e-99
UniRef50_D0I6B6 Type III secretion inner membrane channel protei...   352   2e-95
UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n...   336   2e-90
UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell...   325   2e-87
UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho...   316   2e-84
UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples...   293   2e-77
UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf...   254   7e-66
UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi...   251   7e-65
UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo...   244   8e-63
UniRef50_UPI000190D087 possible secretory protein (associated wi...   214   9e-54
UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID...   186   2e-45
UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4...   124   1e-26
UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs...   108   7e-22
UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom...   102   7e-20
UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n...    93   5e-17
UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4...    86   6e-15
UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri...    83   4e-14

Sequences not found previously or not previously below threshold:

UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl...    81   1e-13
UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T...    51   1e-04
UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re...    51   2e-04
UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ...    47   0.002

>UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms
           RepID=FLHA_BUCAI
          Length = 696

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/695 (62%), Positives = 554/695 (79%), Gaps = 4/695 (0%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M N +++LR+  +LK+TQWQILAGPILIL+ILSMMVLPL  F+LD+ FTFNIALSI++LL
Sbjct: 1   MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG  +AG+V+E+FGHFLVG
Sbjct: 61  VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++
Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M +  A E
Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG
Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---QKAPAEPKPVKMAENNTVVEATWNDV 357
           +LGLVPGMPN++FL+FT  L  L+WW+  ++   +    +        ++ + EA+WNDV
Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWLYEKKYDLENDFIKSNKKYKFIHDAISEASWNDV 360

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
           +LED + +E+GY+L PM D  + G+LL RIR +RKK AQE+GFLPP+V I++NM L    
Sbjct: 361 ELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNS 420

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
           YRI +KGVE+G G  + GR++AI+ G    +LP E   +P FGL+  WI+   K +AQ +
Sbjct: 421 YRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKK 480

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
           GY+V+E+S V++THLN LI+ H  +LFGRQEAQQLL+RV  + PKLTEDL+P  + LT  
Sbjct: 481 GYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIF 540

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597
           HK+L+NLL E VPIRDMRTILETL+EHA  Q DP+ELT++VR+AL + I Q+ F   + +
Sbjct: 541 HKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNII 600

Query: 598 HVIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
            +IGL+  LERLLL +L+ G   +EP L++ LL QT+EA+ +Q ++G+P VLLV H+LR 
Sbjct: 601 EIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRY 660

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
            LS+FLR++ P+L VLS  E+ D + I+MT  IG 
Sbjct: 661 FLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIGT 695


>UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria
           RepID=A0LC38_MAGSM
          Length = 708

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/695 (46%), Positives = 467/695 (67%), Gaps = 10/695 (1%)

Query: 5   AAMLRLPANLKS---TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
            A + LP  L+     ++  L   + +++++++M++PLP+ +LD   + NIA++I++LL 
Sbjct: 11  LAAIGLPLKLQGISLKKYSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLT 70

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            ++  + L+F++FP++LL  T+ RLALN+A+TR+IL+ G  G +AAG+V+ AFG F+VGG
Sbjct: 71  TIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILLHGGEGESAAGEVIRAFGQFVVGG 130

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N+ +G+++F ILVIINF+VITKGAGRIAEV ARF LD MPGKQMAIDADLN+GLI EDEA
Sbjct: 131 NYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEA 190

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           ++RRSE+ QE++F+G+MDGASKFVRGDAIAGILI +INIV G ++GV Q  +S   +A+ 
Sbjct: 191 RRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQI 250

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301
           YT+LT+GDGLVAQIP LVIS  AG +VTR S D ++ + +  Q+ + P V+L+SA VLGL
Sbjct: 251 YTILTVGDGLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGL 310

Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGR--EQKAPAEPKPVKMAENNTVVEATWNDVQL 359
           L ++PGMP + F L    +   +W++  R  ++    + K +  AE     E        
Sbjct: 311 LAIIPGMPTVAFGLLAIAMGSWSWYLFRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLA 370

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
            D L ++VGY LI +VD  Q G+LL +IRSIR++FAQ+MGF+ P +HI+DN+ L+P  Y 
Sbjct: 371 LDLLRLDVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYS 430

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
            L+KGVE+G G+  PG +LA+  G   G + G ATV+PAFGL A WI S  +E+A++ GY
Sbjct: 431 YLVKGVEVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGY 490

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
           TVV+ASTV+ATH+  ++  HA E+  RQE Q LLD V++  PKL E+L+P +V+L  + K
Sbjct: 491 TVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQK 550

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VLQ LL E+V IRDM TILETLA++  I   P +L  +VR +L R+I +++   +  +  
Sbjct: 551 VLQGLLRERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTA 610

Query: 600 IGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           + L    E L+ +A+  G       L P  A +LL + +  + +   +   PVL+    +
Sbjct: 611 LVLGPDAENLVAEAIVSGDYGSYLSLSPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRV 670

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           RP + + L   LP LVVLS  E+  N  +    +I
Sbjct: 671 RPFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705


>UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia
           RepID=C4ZAM7_EUBR3
          Length = 680

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/683 (36%), Positives = 412/683 (60%), Gaps = 14/683 (2%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + +L  +   ++P+P+F+LD++  FN+++++++L   +F +  L+ + FPT+
Sbjct: 3   KKTDLGVGLYLLCAVLFFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTL 62

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LLFTT+ R++LNV+STR+IL  G+      G VV  FG F+ GGN  IG +VF++L+II 
Sbjct: 63  LLFTTIFRISLNVSSTRLILSTGNP-----GVVVNVFGQFVGGGNLVIGAIVFIVLIIIQ 117

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VI KG+ R+AEV ARF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+
Sbjct: 118 FVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGA 177

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA+K+V+GDA AGI+I +IN+VGG ++GV+  G+ +  A + + LLTIGDGLV+QIP+
Sbjct: 178 MDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPS 237

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IS + G++VT+ S + D   +++ QLF    V+ + + VL +LG++  + N  +L   
Sbjct: 238 LLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG 297

Query: 318 AGLLGL--AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIP 373
             +        +  +      E +  +   +   +    N V L   D + +E GY +IP
Sbjct: 298 LAVAFFVTGKNLDKKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIP 357

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           + D  Q G+LL R+  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+  
Sbjct: 358 LADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEIL 417

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
              ++A+NPG     + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL 
Sbjct: 418 FDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLT 477

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            +I  H AEL  RQ+ Q L++ + +  P + ++L+P ++ L  + KVLQNLL E + IRD
Sbjct: 478 EVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRD 537

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           + TI ETLA+HA    D   LT  VR  L RAI+ ++FP  +   VI LD  +E+ ++ +
Sbjct: 538 LLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSS 597

Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           ++         L+P     ++   +  + + E LG   +++ +  +R    +        
Sbjct: 598 VKQTEQGSYLSLDPDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKD 657

Query: 669 LVVLSNLELSDNRHIRMTATIGG 691
           L+VLS  E+  N  ++    +  
Sbjct: 658 LIVLSYNEVESNVELQSVGMVTA 680


>UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria
           RepID=D1B6A5_THEAS
          Length = 697

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/694 (42%), Positives = 435/694 (62%), Gaps = 26/694 (3%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K  ++  +   +L++LI+ MM++PLP ++LD+L   NI   +++LL   + ++ LE AAF
Sbjct: 10  KVLRYADVGMAVLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAF 69

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           PTILL  TL RLALNV++TR++L+ G+     AG+++ AFG+F+VGGN+ +G VVF+ILV
Sbjct: 70  PTILLMATLFRLALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILV 124

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           II F+VITKGA R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADF
Sbjct: 125 IIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADF 184

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGASKFV+GDAIAG++I  INI+GGL +GVLQ GM +  A  +Y+LLT+GDGLVAQ
Sbjct: 185 YGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQ 244

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IPAL++STA G+IVTR + + D+G  MV  +  N   + + + +L  L +VPG+P + F 
Sbjct: 245 IPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFA 304

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND-------------VQLED 361
           L  + +  +A+ I+    +A       + +          +              +   D
Sbjct: 305 LLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLPLLTVD 364

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            + +E+GY LIP+VD  Q G++L RI +IR++ A ++G + P + IRDN+ L+P  Y I 
Sbjct: 365 PMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIR 424

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           +KG E+G G+  P  +LA++ G     L G  T +PAFGL A+WI   +++QA+  GYTV
Sbjct: 425 VKGAEVGRGELLPDHYLAMSTGGE-DLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTV 483

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           V+  +V+ATHL+ +I ++ A+L  RQE Q+L+D VA+  P +T+DL+  V++L  + KVL
Sbjct: 484 VDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVL 542

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q L+ E+V IRD+ T+ ETLA+H      P  L   VR AL R IT +       + V  
Sbjct: 543 QGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVLGVYT 602

Query: 602 LDTPLERLLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
           L    E+ + + ++G         + P     L+     A     M G  PVLL +  +R
Sbjct: 603 LSPRWEQRIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVR 662

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            ++ R +  SLPQL V+S  E++ +  +R    +
Sbjct: 663 LVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696


>UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWG6_ALIAD
          Length = 682

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/681 (42%), Positives = 435/681 (63%), Gaps = 14/681 (2%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + +L  + M+V+P+P  +LD+L  FN+ +S+ +LLVAM T   LEF+ FP++
Sbjct: 6   KRTDLMVMLFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSIFPSL 65

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL TTL RL+LN+++TR+IL +G+     AG V++ FG+F++G N  +G +VF+I++I+ 
Sbjct: 66  LLVTTLYRLSLNISTTRLILSQGN-----AGAVIQTFGNFVIGNNPVVGFIVFLIIIIVQ 120

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEADFYG+
Sbjct: 121 YVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFYGA 180

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIA ++I+ IN+V GL++GV     S   A  +YT+L++GDGLV+QIPA
Sbjct: 181 MDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQIPA 240

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L++STA G++V+R +TDQ++G  +V Q+F     + + +  + LLGL+  +  L  +   
Sbjct: 241 LLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIPIA 300

Query: 318 AG---LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374
            G   +   A   R  +QK   E K  +        E  +  + +E  +  E GY LIP+
Sbjct: 301 GGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVE-PVEFEFGYGLIPL 359

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           VD +Q G+ + R+  IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+  G+   
Sbjct: 360 VDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEILM 419

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
           G WLA++PG     + G  T DP FGL A+W+   +K +A+  GYTVV+  +V+ATHL  
Sbjct: 420 GHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLTE 479

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           ++ +HA EL GRQ+ ++LL+ + Q  P + ED+ PG ++L  + +VL NLL+E VPIRD+
Sbjct: 480 VLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRDL 539

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
            TILE LA+      D  +LT  VR  L R I  Q+  G+D + V+  D  LER + QA+
Sbjct: 540 VTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQAV 599

Query: 615 --QGGG---GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
             QGG    GLEP  A  +  + +E  +  +  G  PVLLV+  +R  LSR +RR +P L
Sbjct: 600 VEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVPDL 659

Query: 670 VVLSNLELSDNRHIRMTATIG 690
            VLS  EL  +  I     + 
Sbjct: 660 PVLSFAELDPSISIHSGGVVN 680


>UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes
           RepID=Q5WFS0_BACSK
          Length = 678

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/662 (41%), Positives = 419/662 (63%), Gaps = 12/662 (1%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP F+LD+L  FNI+LS+++LLVA+ T+  L+F+ FPT+LL  TL RL L+V++TR IL
Sbjct: 22  PLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTMLLLVTLFRLGLSVSTTRSIL 81

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
                G A AG V++ FG F++GGN  +G +VF+IL++I F+VITKGA R++EVGARF L
Sbjct: 82  -----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQFIVITKGAERVSEVGARFTL 136

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQM+IDADLNAGLI + EAK+RR ++  EADFYGSMDGASKFV+GDAIA I+I++
Sbjct: 137 DAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGSMDGASKFVKGDAIASIIIVI 196

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277
           IN++GGL++G++Q GM M  AA +YTLLT+GDGLV QIPAL+ISTA GVIVT+ +++ ++
Sbjct: 197 INMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPALLISTATGVIVTKAASEGNL 256

Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337
              +  Q+ + P ++ ++AA + LLGL   +  +V       L    + +          
Sbjct: 257 STDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSIAGLLAFAGYRLSKASLAKANF 316

Query: 338 PKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFA 395
            + +             + VQL   D +  E GY LIP+ D  Q G+LL R+  IRK+ A
Sbjct: 317 EEALLEEAPPEEPSGPESVVQLLQMDPIEFEFGYGLIPLADANQGGDLLDRVVMIRKQMA 376

Query: 396 QEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV 455
            E+G + PV+ IRDN+ L+P  Y I +KG  +  G+     ++A++ G    ++ G  T+
Sbjct: 377 LELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLDHYMAMSTGEQDDSIVGIETI 436

Query: 456 DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDR 515
           +PAFGL A+W++  ++++A++ GYTVV+  TV++THL  ++  HA EL GR+E +QL+D 
Sbjct: 437 EPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEVLKAHAYELLGREETKQLIDH 496

Query: 516 VAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELT 575
           + +  P L E++ P  +T   + KVL+NLL E++ IR++  I E LA++ P+  D + +T
Sbjct: 497 LKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLPVIFEALADYGPLTKDMNVVT 556

Query: 576 AVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLA 630
             VR AL R IT Q   G +E+ VI L   +E+ +  A+          L P  +  +L 
Sbjct: 557 EYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIGQNENGSFLALAPADSQAILQ 616

Query: 631 QTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            T + + +   LG   V+L + A+R  + + + R LP + V+S  EL  +  ++    + 
Sbjct: 617 NTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVPVVSYNELEPDVEVQSVGVVN 676

Query: 691 GK 692
            +
Sbjct: 677 AE 678


>UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria
           RepID=Q21IQ2_SACD2
          Length = 755

 Score =  783 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/722 (50%), Positives = 492/722 (68%), Gaps = 44/722 (6%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           ++      L+ PIL+L++L MM LPLPAF+LD  F+FNIALSI+VLLVA+++ R L+FA 
Sbjct: 25  IRGAGRGNLSVPILLLMLLGMMTLPLPAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAV 84

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPTILL  TLLRLALNVASTR++L+EGH G  AAGKV++AFG  ++GGN+A+G+VVF+IL
Sbjct: 85  FPTILLIATLLRLALNVASTRVVLLEGHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIIL 144

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           +IINF+V+TKGAGRI+EV ARF LD MPGKQMAIDADLNAG+I +DEA+ RR +V  EAD
Sbjct: 145 IIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEAD 204

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           FYG+MDGASKFVRGD++AGILI++INI GGLLVG++QH +    A E Y LLTIGDGLVA
Sbjct: 205 FYGAMDGASKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVA 264

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           QIP+L++S AA ++VTRV++ +D+  Q+++Q+F +P  + ++  ++ ++G +PGMP+  F
Sbjct: 265 QIPSLLLSVAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPF 324

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEP----------------------------------- 338
           +        LA++I  R Q+A                                       
Sbjct: 325 ITLAIICGILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSA 384

Query: 339 -KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397
            +     +++   E +W+DV   D +G+EVGYRLIP+VD  Q GELLGRI+ +RKK +Q+
Sbjct: 385 RQGNPPPQSSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQD 444

Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457
           +GFL P VHIRDN+DL P+ YRI + GV IG G+ +P ++LAINPG   G+L G  T DP
Sbjct: 445 LGFLIPAVHIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDP 504

Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVA 517
           AFGL AIWI+ A +EQAQ  GYTVV+ STVVATHLN +I  H  EL G +E Q+ LD + 
Sbjct: 505 AFGLEAIWIDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLG 564

Query: 518 QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAV 577
           ++ PKL E+LVP  +++  L K LQ LL E+VPIRDMRTI E LA H     D   LT++
Sbjct: 565 EKSPKLVEELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSI 624

Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG--------GGGLEPGLADRLL 629
            RV+L R I Q        + VI LD  LE+LLLQ++Q         G  +EP LA+RL 
Sbjct: 625 ARVSLARQIVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLN 684

Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
               E   +QEM G P VLLV   +RP++++F+R  + ++ V++  E+ DN+ I + ATI
Sbjct: 685 KSLVETAKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744

Query: 690 GG 691
           G 
Sbjct: 745 GA 746


>UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria
           RepID=A1V9R4_DESVV
          Length = 703

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/686 (44%), Positives = 435/686 (63%), Gaps = 11/686 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  +   +     ++ IL +M++PLP F LD+L   +I+LS+++L+ +MF    LEF+ F
Sbjct: 15  RFAKQGDILLAGGVVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIF 74

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTLLRLALNVASTR+IL+ G  G  AAG+V+ AFG F+VGG++ IG V+F+IL 
Sbjct: 75  PSLLLVTTLLRLALNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILF 134

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+N  VIT G  RIAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR  + +EADF
Sbjct: 135 ILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADF 194

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV GD  AG+ I +INI+GGLLVG++Q  M    A  +YTLLT+GDGLV+ 
Sbjct: 195 YGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVST 254

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IP++++STAAG+IV+R +++  +GE+ + QL  N   M L + VL L  LVPG+P + FL
Sbjct: 255 IPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFL 314

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND------VQLEDSLGMEVG 368
           +F+A L   A  +  R+             +       + +       +   D+L +EVG
Sbjct: 315 IFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVG 374

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y LIP+VD +Q+G LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ 
Sbjct: 375 YGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVA 434

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
           S +      LA++PGTA   + G  T +PAF L A+WI  + KE+A + GYTVV+ STV+
Sbjct: 435 SAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVI 494

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATHL  +  +H +E  GRQE Q LLD +++  PK  E+LVPGV++L  + KVLQNL+ E 
Sbjct: 495 ATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVREN 554

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           V +RD+ +++ETLA++ P   +P  LT  VR  L R+I +     +  + +I LD  +ER
Sbjct: 555 VSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVER 614

Query: 609 LLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
            L  +++   G     L P  A RL+      +         PV+L     RP L++ L 
Sbjct: 615 TLQDSIRQTEGGAYLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLM 674

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689
           R LP + VLS  E+  +  ++    +
Sbjct: 675 RFLPNIPVLSQAEIPPDIRLQAVGNV 700


>UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA3_RHOM4
          Length = 696

 Score =  779 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/683 (46%), Positives = 437/683 (63%), Gaps = 11/683 (1%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           LP  L             I+LIL +M++PLP F+LD+L   NI +S+ +LL A +  R L
Sbjct: 13  LPGGLARRFNTEALLASSIVLILFVMLVPLPPFLLDVLLATNITISLAILLTAFYAARPL 72

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           EFA FP +LL TTL RL+LNVASTR+IL EG      AG ++ AFG F+V GN+ +G ++
Sbjct: 73  EFAIFPGLLLLTTLFRLSLNVASTRLILSEGK-----AGALISAFGQFVVAGNYVVGAII 127

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F++LV+INF+VITKG+GRIAEV ARF LD +PGKQMAIDADLNAGLI EDEA+KRR E+ 
Sbjct: 128 FIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIA 187

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +EADFYG+MDGASKFVRGDAIAG++I  +NI+GG L+GV QHGMS   AA+++ LL+IGD
Sbjct: 188 READFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGD 247

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           GLV+QIPAL+ISTAAG+IV+R S + ++ E+   QLF     +L++ + L LLGLVPG+P
Sbjct: 248 GLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLP 307

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369
            + F L     L L +  R  E++  A+P   +  E          ++ + D L +E+GY
Sbjct: 308 LVPFWLLAGTTLLLGYQRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLELEIGY 367

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
            LIP+VD  Q G+LL RI+ +R++ A E+G + P V IRDNM L   RY I ++G  +  
Sbjct: 368 GLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGNPVAE 427

Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489
           G+  PG +LA+ P     T PG  T DP FGL A+W+       A+  G TVVEA  V+ 
Sbjct: 428 GEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAPAVIT 487

Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549
           THL  ++ ++A  L  RQE ++LLD+V +  P L E+L P ++++  + KVL+ LL E++
Sbjct: 488 THLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLLRERI 547

Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609
           PIRD+ +ILE LA+HA    +   LT  VR AL   IT+Q+      ++   LD  LER 
Sbjct: 548 PIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPILERH 607

Query: 610 LLQALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
           LLQ  + G       GLEP  ++R L + +    R    G PPVLL +  LRP+L  FL 
Sbjct: 608 LLQQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPVLYNFLA 667

Query: 664 RSLPQLVVLSNLELSDNRHIRMT 686
            S+P L VLS  +L  +  + + 
Sbjct: 668 PSIPDLNVLSYNDLLPDTRVEVV 690


>UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae
           RepID=FLHA_BUCBP
          Length = 702

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/700 (58%), Positives = 525/700 (75%), Gaps = 9/700 (1%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M+N+ ++ +     +  ++Q L+GP+LIL+ILSMMVLPL  FILDL FTFNIALSI+VLL
Sbjct: 1   MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG
Sbjct: 61  MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE +
Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+   AA+
Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS  VLG
Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357
           +LGLVPGMPN++FL+FT  L  ++W I             +K  +N     + +A+WNDV
Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360

Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           QLE S+ +E+G  LIPM+    +   LL +IR++RKK A+ +GFLPP+VHIRDN +L   
Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474
            Y IL+KG+EI  G    G++LAIN G A+G   LP E T DP F   + WI S L  QA
Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           + +GY + E STV++THLNH+I  H + LFGRQEAQQLLD V++  PKL EDL+P  + L
Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQSDPHELTAVVRVALGRAITQQWFPG 593
           T  H+VLQNLL E VPIRDM+TILETL  HAP  Q+D   LT++VR++LG+ I Q  F  
Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIF-Q 599

Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
            +++ VI  D+ LE++LL+ +      LEPGL + ++ + Q+  +  ++   P VLLV+H
Sbjct: 600 NNKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            LR  +++ L +++P++ VLSNLEL D   I  T  IG +
Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699


>UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC
          Length = 691

 Score =  773 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/679 (41%), Positives = 429/679 (63%), Gaps = 14/679 (2%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             +     ++ I+ MM++PLP FILD+L   NI+LS+++LL+ +FT   L+ + FPT+LL
Sbjct: 10  MDVIVAFGVVGIVLMMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDLSIFPTVLL 69

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
            TTL RL LN++STR+IL +G+     AG+V+EAFG F+VGGN+ +GI++F+I++I+ F+
Sbjct: 70  VTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFLIILIVQFV 124

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I +  A+KRR E+ QEADFYGSMD
Sbjct: 125 VITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEADFYGSMD 184

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GA+KFV+GDAIAG+++  INI+GG+++G +   M++  AA++Y  LTIGDGLV+QIPAL+
Sbjct: 185 GANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLVSQIPALL 244

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
           IST+AG+IVTR STD++ G  +  QL + P  ++++  VL +LG++PG+P   F     G
Sbjct: 245 ISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPAFFSLGIG 304

Query: 320 LLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376
            +   +++   ++    +    KP  +  +   VE   N + +E S+ +E+GY LI + D
Sbjct: 305 AIAAGYFLGREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLINVE-SIEVEIGYGLISLAD 363

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436
               G+LL RI SIR++ A +MG +   + IRDN+ L P +Y I +KG  +G  +  P  
Sbjct: 364 ESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGGYEIMPNM 423

Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
            L ++P     ++ G  T++P FG+ A+WIES   E A+I+GYTVV++ST++ THL  +I
Sbjct: 424 VLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILITHLLDII 483

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
             +A EL GRQE + ++D   +    + ++L+P ++TL  + KVL+NLL EKV I+D  T
Sbjct: 484 KSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKVNIKDRVT 543

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616
           ILETLA+ +    D   LT  VR+AL R+I          + V  L    E L+   LQ 
Sbjct: 544 ILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEELVSNNLQR 603

Query: 617 G-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
                   ++P   +++    QE ++        PV++V+  +R    + +    P L V
Sbjct: 604 SVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEIVYPNLTV 663

Query: 672 LSNLELSDNRHIRMTATIG 690
           LS  E+ ++  I+    + 
Sbjct: 664 LSLNEIPNDIKIKAEGVVS 682


>UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=B8FTQ1_DESHD
          Length = 688

 Score =  768 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/690 (41%), Positives = 430/690 (62%), Gaps = 16/690 (2%)

Query: 8   LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67
           +    N +      +   I I+ I+ MMV+P+P  +LD+L T +I+ +++ L++++FT+ 
Sbjct: 1   MATNVNRRWYSNIDVLAAIFIVSIVVMMVVPIPPLMLDILLTISISAAVLTLMISVFTKD 60

Query: 68  TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127
            L+F+  P+++L  TL RL+LNV +TR+IL EGH     AG+V++ FG F+V G+  +G 
Sbjct: 61  PLDFSVLPSLILILTLFRLSLNVTTTRLILGEGH-----AGEVIQQFGEFVVKGSAVVGF 115

Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187
           ++F ILV++NF+VITKG+ R++EVGARF LD MPGKQM+IDADLNAG+I E +A+ RR +
Sbjct: 116 IIFAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQK 175

Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247
           +  EADFYG+MDGASKFV+GDAIA I+I+ INI+GG + GV+  GM +  A  +YTLLTI
Sbjct: 176 IQAEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTI 235

Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GDGLV QIPAL++STA G++VTR +++ ++GE +  QLF  P  + ++A V  +L +  G
Sbjct: 236 GDGLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-G 294

Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK---MAENNTVVEATWNDVQLEDSLG 364
           +P L  L+    L+ L   +    QKA  E          E +   E   N +   D++ 
Sbjct: 295 LPLLPLLIVAIVLVALGRVMDKGSQKAVVEESAAARETALEESKKPENVLN-LLNVDNME 353

Query: 365 MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
           +E+GY LI +VD QQ G+LL RI  IR++ A E+GF+ PV+ +RDNM+LQP +Y I ++G
Sbjct: 354 LELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRG 413

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
            E+  G+     +LA++ G     +PG  T +PAFGL+A WI +  +E+ ++ G TVV+A
Sbjct: 414 AEVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDA 473

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
            TV+ATHL  +I  +A E+  RQ+ + LLD   ++ P   +D +   + L  L KVL NL
Sbjct: 474 PTVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEH-LDLGHLQKVLANL 532

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           L E+V IRDM TILETLA++A    D   LT  VR +L R I Q       ++ V+ L+ 
Sbjct: 533 LRERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEP 592

Query: 605 PLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
            LE+L+L ++Q         L+P +   L+      + +  + G  PVL+    +R  L 
Sbjct: 593 KLEQLILDSIQPSDFGSYMTLDPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRINLK 652

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           R   R LPQL+VLS  EL     ++    +
Sbjct: 653 RVTERQLPQLMVLSYNELVHGVQVQAVGMV 682


>UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum
           RepID=B6AMB1_9BACT
          Length = 702

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/679 (44%), Positives = 430/679 (63%), Gaps = 11/679 (1%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             +   + ++ IL +M++P+P  +LDL    NI  S+++LLVAM T+  LEF  FP+ILL
Sbjct: 21  SDILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFPSILL 80

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
            +TL RL+LNVASTR+IL+ G  G  AAG V+++FG F+VGG++A+G+V+F I V+INF+
Sbjct: 81  LSTLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVVINFV 140

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           V+T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FYG+MD
Sbjct: 141 VVTRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMD 200

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GASKFVRGDA+A ILI+ +NI+GGL++G++  G+ +  A  +YTLLTIG+GLVAQ+PAL+
Sbjct: 201 GASKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALI 260

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
           +S AAG++VTR  +  D+G ++  Q+ + P  +  ++ +L LL ++PG+P+  F L  + 
Sbjct: 261 VSVAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLLASV 320

Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
              +A+     E+K   E +  +                  D L + VGY L+ +V+ + 
Sbjct: 321 TGLMAYRRTTLEKKKARELQAEEKTVP--PPAENVETYLSLDLLELNVGYGLVDLVEGKA 378

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
              L  RIR IR++ AQEMG + P +HIRDN+ L+P  Y +L+KG  +   +  P   LA
Sbjct: 379 GSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSLLA 438

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +NPG    T+ G    +P FGL A WI    +E+ + QG+TVV+  TV++THL  +I  H
Sbjct: 439 MNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIRSH 498

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           AAEL GRQE Q+LLD + ++ P+L EDLVPG V+L  L  VL  LL E+V IRD+RTILE
Sbjct: 499 AAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTILE 558

Query: 560 TLAE---HAPIQSDPHELTAVVRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL-QAL 614
            +++         D   L   VR ALGR+I   +  GK   + V+  D   E + + QA 
Sbjct: 559 AVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQAS 618

Query: 615 QGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
           Q   G    LEPGLA +LL+   + +      G  PVLLV+   R  + RFL R    L 
Sbjct: 619 QTPPGSPLVLEPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLERYFSSLP 678

Query: 671 VLSNLELSDNRHIRMTATI 689
           VLS +E+  +  I     +
Sbjct: 679 VLSPMEVPKDVPIVSQEVV 697


>UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNG5_9BACT
          Length = 696

 Score =  765 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/678 (43%), Positives = 451/678 (66%), Gaps = 8/678 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           Q   +   I  + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ +   L F+ FP++
Sbjct: 13  QQNDVMFSIFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSV 72

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RL+LNVA+TR IL+ G  G  AAG+V+ +FG F+VGGN+ +GI++F+ILV+IN
Sbjct: 73  LLIVTLFRLSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLIN 132

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           FMVITKG+GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+
Sbjct: 133 FMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGA 192

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFVRGDAIAGI+I  INI+GGLL+GV QH M  G +A  +T+LTIGDGLV+QIP+
Sbjct: 193 MDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPS 252

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IST+AG+IV+R     D+  Q+  QLFS+  V+ ++ A+L    LVPG+P + F+   
Sbjct: 253 LIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIA 312

Query: 318 AGLLGLAWW---IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374
           A +  L +     +   +K   E    +    +   E    ++   D + +E+G+ LIP+
Sbjct: 313 ALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPL 372

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           VD  Q G LL RI++IR++ A EMGF+ P V IRDN+ L    Y +++K V + +G  +P
Sbjct: 373 VDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFP 432

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
            ++L +NP      + G  T +PAFGL A W++  +K+ A+++GYT+V+ STV+ATHL  
Sbjct: 433 EKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTE 492

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           +I ++A EL GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR++
Sbjct: 493 IIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNL 552

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
           +T++E LA       +P  L   VR+ L R IT+        ++V  L + +E++L  +L
Sbjct: 553 QTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSL 612

Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
           Q         ++P LA ++L+   +        G PP+++++  +R  + RF+ + +P +
Sbjct: 613 QNTDDGQEIVIDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFVEKFVPNV 672

Query: 670 VVLSNLELSDNRHIRMTA 687
            ++S+ E+S++  I    
Sbjct: 673 NIMSHNEISESVRIESLG 690


>UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae
           RepID=A3U131_9RHOB
          Length = 701

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/685 (39%), Positives = 409/685 (59%), Gaps = 10/685 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             + + +A  + + L+L+++ +PLP  ILD     +++LS+++L+VA++  + L+F +FP
Sbjct: 19  GLKNRDIAFAVGVTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFP 78

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           T+LL  T+LRL+LNVASTR+IL EGHTG  AAG V+E F  F+V GNF IGIV+F ILV+
Sbjct: 79  TLLLVVTMLRLSLNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVV 138

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           INF+VITKG+ RIAEV ARF LD MPGKQMAIDADL AGLI E EAK RR  +  E+ F+
Sbjct: 139 INFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFF 198

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFVRGDA+AGI+I +IN++GG+L+GV+Q+ +S+  AA SYT LTIGDGLV Q+
Sbjct: 199 GAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQV 258

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PAL++S AAG+IVT+  T+    E ++ QL   P  + ++A +L  +GL+PG P +VF  
Sbjct: 259 PALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFA 318

Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE---DSLGMEVGYRLI 372
               + GL W+I  +E++   + +  ++ +      A    VQ     D L +E+G  L+
Sbjct: 319 LGGLMAGLGWYIGQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALV 378

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
           P++    D  L G+I+S+R  FA+E GF+ P V I D   L    Y +L++GVE+  G+ 
Sbjct: 379 PLMSAA-DAALPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEV 437

Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
            P   + +NP      + GEA  DP FGL+A+WI+     +A+ QGYTVV+  +V+ THL
Sbjct: 438 RPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHL 497

Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             ++ +H  +L      Q L++ + ++  KL  + + G      +  VLQ LL E+V +R
Sbjct: 498 TEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVR 556

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612
           ++  I+E +AE     S+   +   VR  L   I +        + VI L    ++  + 
Sbjct: 557 NLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVD 616

Query: 613 ALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
           +++  G      + P      +   +  +         P +LV+   R  +   L R  P
Sbjct: 617 SIRMNGDDKTLIMSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSP 676

Query: 668 QLVVLSNLELSDNRHIRMTATIGGK 692
              V+S+ E+  N ++R  ATIG +
Sbjct: 677 MTQVISHNEVHRNANLRTLATIGRE 701


>UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=A9KND9_CLOPH
          Length = 677

 Score =  758 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/662 (37%), Positives = 410/662 (61%), Gaps = 12/662 (1%)

Query: 37  LPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRII 96
           +P+PA +LD L   NI++S+++L  A+F+Q  L  + FPTILLFTT+ R++LNV+ST++I
Sbjct: 21  VPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTILLFTTVFRISLNVSSTKLI 80

Query: 97  LMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFV 156
           L  G+      G VV  FG F+   +  IG++VF+IL+II F+VI KG+ R++EV ARF 
Sbjct: 81  LSSGNP-----GAVVTQFGRFVGQDDVIIGVIVFIILIIIQFIVINKGSERVSEVTARFT 135

Query: 157 LDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIM 216
           LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+MDGA+K+V+GDA+AG++I 
Sbjct: 136 LDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGATKYVKGDAVAGLIIT 195

Query: 217 VINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD 276
           V+N++GG ++G+++ G+  G A   Y +LTIGDGLV+QIP+L+IS A G++VT+VS + D
Sbjct: 196 VVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISLATGIVVTKVSKEAD 255

Query: 277 VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA 336
           +G+ ++ QLFS P V+ +    L  LG+V  +P +VF  + A  +     I  R + A  
Sbjct: 256 IGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIFCGRVIDKRVKIASI 315

Query: 337 EPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKF 394
           E +     ++   +    N V L   D + +E GY +IP+ D  Q G+LL R+  IR++ 
Sbjct: 316 EEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVNQGGDLLDRVVLIRRQI 375

Query: 395 AQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT 454
           A E+G + P + +RDN+ L P +Y I +KG+ +  G+     ++A+NPG     + G  T
Sbjct: 376 ALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYMAMNPGYVEEEITGIPT 435

Query: 455 VDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLD 514
            +P+F L A+WI  + +E+A+  GYTVV+  +++ATHL  +I  H  EL  RQ+ Q L+ 
Sbjct: 436 FEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRGHLDELLTRQDVQNLIT 495

Query: 515 RVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574
            + +    L  +LVP ++ +  + KVLQNLL E + IRD+ TI ETLA++AP   D   L
Sbjct: 496 NITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIFETLADYAPTTRDTDVL 555

Query: 575 TAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLL 629
           T  VR +L RAI+ ++F   +   V+ LD  +E+ ++ +++         ++P     ++
Sbjct: 556 TEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTEQGAFLAIDPEKTQSIM 615

Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
              ++ + + E LG  P+++ +  +R    +  +     L+V+S  E+  N  ++    +
Sbjct: 616 KSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLIVISYNEIESNVELQSVGMV 675

Query: 690 GG 691
             
Sbjct: 676 TA 677


>UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria
           RepID=A6Q2M0_NITSB
          Length = 695

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/663 (43%), Positives = 440/663 (66%), Gaps = 10/663 (1%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           M+LP+P F LDLL T +I  S+++L+  ++    LE A+FP++LL  TL RLALN+A+TR
Sbjct: 31  MILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIASFPSLLLLATLFRLALNIATTR 90

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
            IL+ GH G  AAGK++E+FG F+VGGN+ +GI++FVILV INF+V+TKG  RI+EVGAR
Sbjct: 91  RILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVILVTINFIVVTKGTERISEVGAR 150

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD MPGKQMAIDADLNAGLI E EA++RR  + +EADFYG+MDGASKF+RGDAIAGI+
Sbjct: 151 FTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEADFYGAMDGASKFIRGDAIAGII 210

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD 274
           I  INI+GG+ +GVLQHGM +  AA ++TLLT+GDGLV+QIP+L+ STAAG++VTR  ++
Sbjct: 211 ITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLVSQIPSLITSTAAGLMVTRAVSE 270

Query: 275 QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA 334
            ++G+++ +QL S P  + ++A  L ++G VPGMP + F +  AG++ L  ++   E K 
Sbjct: 271 TNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIPFTIL-AGMIALTAYMMQLEMKR 329

Query: 335 PAEPKPVKMAE---NNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIR 391
               K  +  +      V E+    +   +++  E+GY LIP+VD ++ GELL RI+S+R
Sbjct: 330 ETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYGLIPLVDEEKGGELLKRIKSLR 389

Query: 392 KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPG 451
           K+ ++E+G + P++HI+DN++L+   YRIL+KGVE+      PG+ LAI+ G   G L G
Sbjct: 390 KQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARYQIEPGKMLAIDTGQTNGKLEG 449

Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511
             T +P FGL A WI+ + K++A++ G+TVV+  TV+ THL+ +I Q+A E+ GR E ++
Sbjct: 450 VETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIITHLSEIIKQNAHEILGRSETKE 509

Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571
           L+D++ Q+ P + +++VP  V    LH+VLQNLL E +PI+D+ TI+E+L+++     D 
Sbjct: 510 LVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIPIKDLLTIIESLSDNITKTEDT 568

Query: 572 HELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG----LEPGLADR 627
             LT +VR +L R IT  +      ++ + LD   E  L   ++   G    ++P     
Sbjct: 569 DILTELVRESLARLITSIYA-KDGVLYALTLDPASEEKLYAKIKEYNGNLPPIDPAKLQS 627

Query: 628 LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
            + Q  + + +  +    PVLL +  +R  + + +   +  + VLS  E+     +++  
Sbjct: 628 FIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYMSNVAVLSYNEVDPKTKLKIID 687

Query: 688 TIG 690
            + 
Sbjct: 688 KVS 690


>UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria
           RepID=C4Z5H9_EUBE2
          Length = 679

 Score =  752 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/681 (37%), Positives = 422/681 (61%), Gaps = 12/681 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   I +L  +   ++ +P+++LD+L   NI ++++VL  ++F +  L+ A+FPT+
Sbjct: 4   KKNDLFIGIYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTM 63

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LLFTT+ R++LNV+ST++IL  G+     AGKVV+ FG F+  GN  IGI++F+IL+II 
Sbjct: 64  LLFTTIFRISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQ 118

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VI KG+ R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE  F+GS
Sbjct: 119 FIVINKGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGS 178

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA+K+V+GDA AG++I  IN++GG+++G+   G+++  A   YT+LTIGDGL +QIP+
Sbjct: 179 MDGATKYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPS 238

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IS A GV+VT+ S++ ++G++++ QLFS   V+L+  A L LLG+   +P  +F+   
Sbjct: 239 LLISLATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLG 298

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMV 375
             L+     +  +  +   E    +     + +    N V L   D + +E GY +IP+ 
Sbjct: 299 MALIIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLA 358

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL R+  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+    
Sbjct: 359 DVNQGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFD 418

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            ++A+NPG     + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL  +
Sbjct: 419 HYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEV 478

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I QH AEL  RQ+ Q L++ +      L E+LVP ++ +  + KVLQNLL+E + IRD+ 
Sbjct: 479 IRQHIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLV 538

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           TI ETLA+HA +  DP  LT  VR AL RAI+ ++F   +  +V+ +D  +E+ ++ +++
Sbjct: 539 TIFETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVK 598

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    L+P  + +++      L + E +G  P+++ +  +R       +     ++
Sbjct: 599 NTEQGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDII 658

Query: 671 VLSNLELSDNRHIRMTATIGG 691
           V+S  E+  N  ++    +  
Sbjct: 659 VISYNEVESNVELQSVGMVTA 679


>UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia
           RepID=B0K1R1_THEPX
          Length = 673

 Score =  750 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/677 (42%), Positives = 425/677 (62%), Gaps = 15/677 (2%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + ++ I+ ++++P+P  I+D L   NI LSI++LL  M+ +  L+F+ FP+I
Sbjct: 2   KASELTVALFVVGIVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSI 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL TTLLRLALN++STR+IL   +     AG V++AFG F++GGN  +G ++F+I+ I+ 
Sbjct: 62  LLITTLLRLALNISSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VIT+GA R++EV ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+
Sbjct: 117 FIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIA I+I++INIV GL++G++  GM +  A  +Y +LT+GDGLV+QIPA
Sbjct: 177 MDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPA 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+ISTA G+IVTR +++ ++G  ++ QLF+ P ++ ++A +L  L LVP +P L  +L  
Sbjct: 237 LLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIG 296

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377
           +    L +    +      E +       N        ++   D + +E GY LIP+   
Sbjct: 297 SLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKKVYELLQVDPIELEFGYELIPLAS- 355

Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437
              GELL RI  IR++ A ++G + P++ +RDN+ L+P  Y I ++G EI  G  Y  R+
Sbjct: 356 ---GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRY 412

Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
           +A+  G     + G    +PAFGL AIW++   + +A+ +GYTVV+  +V+ATHL H+I 
Sbjct: 413 MAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIK 472

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           QHA EL GRQE Q L+D V    P L E+LVP ++T+  + KVL NLL E + IRD+ TI
Sbjct: 473 QHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTI 532

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
           LETLA++API  D   LT  VR AL R I+ ++ P   ++ VI LD  +E+L+  ++   
Sbjct: 533 LETLADYAPIIRDTDVLTEYVRQALARTISNKYAPY-GKIEVITLDPSVEQLISSSITQT 591

Query: 618 G-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
                  LEP  A R+L    E   +  + G  PV+L     R  L + + +  P + VL
Sbjct: 592 EHGSYLALEPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVL 651

Query: 673 SNLELSDNRHIRMTATI 689
           S  EL  N  +    T+
Sbjct: 652 SYNELLPNIEVASVETV 668


>UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT
          Length = 694

 Score =  750 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/681 (43%), Positives = 449/681 (65%), Gaps = 7/681 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  +   +   I +L +L +M++PLP +++D++   NI + +++LL A++  + LEF+ F
Sbjct: 11  RIGKQPDILLAISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVF 70

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RL+LNVA+TR+IL+ G  G AAAG V+E FG F+VGGN  +G+++F+ILV
Sbjct: 71  PSLLLLTTLFRLSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILV 130

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           +INF+VI+KG+ RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR  V +EA+F
Sbjct: 131 LINFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEF 190

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGASKFVRGDA+AG++I VIN+VGGL++GV+QHGMS+  A   ++LLT+GDGLV+Q
Sbjct: 191 YGAMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQ 250

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IPALVISTAAG+I+TR S+++ +  ++  Q  ++P V  ++A  L L+ LVPG+P + FL
Sbjct: 251 IPALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFL 310

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-NNTVVEATWNDVQLEDSLGMEVGYRLIP 373
           + + GL    ++++  +Q+   E     +      + E   +D+ +ED + +E+GY LI 
Sbjct: 311 ILSLGLGASGYYLQLGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLID 370

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           MV+  ++G LL R++ +R++  QE+GF+ P VHI+DN+ L  + Y+IL++G  +G G+  
Sbjct: 371 MVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIR 430

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
           P   LA+    +   + G AT +PAFGL A+WI    ++QA++ GYTVVE +TV+ THL 
Sbjct: 431 PRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLT 490

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            L+   AAE+  R +   LL++ AQ  PK+ E++VP  V +  L  VLQ LL E VPIRD
Sbjct: 491 ELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRD 550

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ- 612
           +  ILE L++HA       +L   VR  LGR ITQ++   + E+ V  LD  LE+ + + 
Sbjct: 551 LMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSER 610

Query: 613 -ALQGGGGLEPGLA--DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
            + Q G  L   +    R +++  E  S  ++    PVLL    LR  L+R LR+ + ++
Sbjct: 611 MSQQQGWALPLDMPEWQRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTRALRKVMTRI 668

Query: 670 VVLSNLELSDNRHIRMTATIG 690
            VLS  E+    +I+  A + 
Sbjct: 669 AVLSIAEIPPQTNIQSLAKVS 689


>UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales
           RepID=C2ED96_9LACO
          Length = 692

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/663 (37%), Positives = 397/663 (59%), Gaps = 16/663 (2%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  +LD+    N+ ++I +LL+ +FT+  LEF+ FPT+LL TT+ +L LN++STR IL
Sbjct: 33  PLPTSLLDIFIVTNLTVAINILLITLFTKSVLEFSTFPTVLLITTMFKLGLNMSSTRSIL 92

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
             G+      G V+EAF   + G N+ +GI++FVI++I+  +V+T G+GR++EV ARF L
Sbjct: 93  TTGN-----GGHVIEAFADVVAGENYIVGIILFVIIMIVQLVVVTNGSGRVSEVSARFTL 147

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQMAID+DLN+G I E++A++RR ++ +EADFYGSMDGASKFV+GDAIAGI+I++
Sbjct: 148 DAMPGKQMAIDSDLNSGAITEEQARQRRKDLQREADFYGSMDGASKFVKGDAIAGIIIVL 207

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDV 277
           +N++GG ++   +  +S+  A   +  L IGDGLV+ +P+L+IS A GVIVTR   +   
Sbjct: 208 VNLIGGTIIFTAKGDLSITDALSQFGKLAIGDGLVSSVPSLLISLATGVIVTRSEDNSTF 267

Query: 278 GEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAE 337
           G  + +    NP +  +   +L +L LVPG P + F++ +  +      ++ +E++   E
Sbjct: 268 GTDIASDALRNPQLFKVVGVILLVLALVPGFPKIPFIVLSLAMFAANVLVKQKEEQRIKE 327

Query: 338 PKPVKMA---ENNTVVEATWNDVQ--LEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392
               +     +     +   +DV     + L +E+GY LIP+VD   D  L+ RI +IR+
Sbjct: 328 RIKEEQTLALQRKKEEQEEDDDVASFQVEPLSIEIGYGLIPLVDSTIDNSLMNRISAIRR 387

Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN-PGTAAGTLPG 451
           + A E+G L   V IRDN+ L    Y I ++G E+G GD YP +++ I+     +    G
Sbjct: 388 QTAHELGILVSPVRIRDNLYLNANDYSIKIRGNEVGHGDIYPDKYMIISQSDDGSFPFQG 447

Query: 452 EATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQ 511
             T +PAF L+A+WI+   KE A +QG+TV+E  TV+ATHL  +I  HA EL GRQE Q+
Sbjct: 448 IPTKEPAFQLDALWIDEKDKENADLQGFTVIEPLTVIATHLKEIIHAHAPELLGRQEVQK 507

Query: 512 LLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDP 571
           LL+ +      + ++L+P ++ L  + KVLQNLL+E VPI D+ TILETLA++  +  D 
Sbjct: 508 LLEGIKANNNVVIDELIPDIMRLGEVEKVLQNLLEENVPINDLSTILETLADYGTVTKDT 567

Query: 572 HELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLAD 626
             LT  VR  L R I  ++    D ++V+ +   +E ++ Q++Q         ++P   +
Sbjct: 568 EVLTEYVRQGLRRTIANKYADENDRINVVTIHPKVEEMVSQSIQKTATGSYPVMKPDSVN 627

Query: 627 RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 686
           ++L    +   +        V+L +  +R    + +  + P + VLS  E+ +   I   
Sbjct: 628 KILTAIGDISQQMAAQNMNYVILTSPKIRLAFRKLIAFNFPDVAVLSLNEIPNEIAIESI 687

Query: 687 ATI 689
             I
Sbjct: 688 GNI 690


>UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72
           Tax=Proteobacteria RepID=Q5DY37_ECOLX
          Length = 697

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/698 (42%), Positives = 441/698 (63%), Gaps = 16/698 (2%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
                + L   +   L  P++IL IL+M++LPLP  +LD+LFTFNI L++MVLLVA+  +
Sbjct: 2   AKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAK 61

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
           R LEF+ FPTILL TTL+RL LNVASTR++L+ GH GA AAGKV+E+FG  ++GGNF +G
Sbjct: 62  RPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVG 121

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
            VVF+IL+IINF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR 
Sbjct: 122 FVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRK 181

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
           +V  EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+T
Sbjct: 182 DVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMT 241

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306
           IGDGLVAQIP+L++STAA +IVTRVS + D+   + +QL ++PSV+  +  ++ +L +VP
Sbjct: 242 IGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVP 301

Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK----MAENNTVVEATWNDVQLEDS 362
           GMP+L FLLF+A L    W +  R Q A AE K ++         +  + +W  + L + 
Sbjct: 302 GMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 361

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + + +GY+L+ +VD  Q   L  RIR +R+  +   G L P + IR+N  L+P++Y I +
Sbjct: 362 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 421

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
            G++    D    + +A+      G + G    DPA+G+   WI+ A K +A   GY V+
Sbjct: 422 NGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVI 481

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           ++++V+ATH+N ++  +  +LF   +  QL +R++   P+L EDL    +  + L KV +
Sbjct: 482 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYR 540

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E V +RD+ TI   L   + +  D   L A VR+AL R+IT  +   K E+ V  L
Sbjct: 541 ALLTEGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 599

Query: 603 DTPLERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           +  LE LL     QA Q G  +      +P + ++  +   +   + +  G  PVLLV  
Sbjct: 600 NNELENLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPP 659

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            LRPLL+R+ R   P L VLS  E+ D   +++   + 
Sbjct: 660 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALS 697


>UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2
           Tax=Bacteria RepID=Q1Q6S4_9BACT
          Length = 695

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/688 (42%), Positives = 451/688 (65%), Gaps = 17/688 (2%)

Query: 12  ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           A  K      +A  I ++ I  ++++P+P FI+DLL T NI+L +++LLV++  +  L+ 
Sbjct: 13  AFFKYLFKGDMALIIGVISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALDL 72

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
           ++FP+ILLF TL RLALNVASTR IL++G+      GKV+ AFG F+VGGN  +G+VVF+
Sbjct: 73  SSFPSILLFMTLFRLALNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVFL 127

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           I+V+I F+VITKGA RI EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++E
Sbjct: 128 IIVVIQFIVITKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSRE 187

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
           A+FYG+MDGA KFV GDA+AGI+I++INI+GG+++G+ + GMS+  A + YTLLT+GDGL
Sbjct: 188 AEFYGAMDGAGKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDGL 246

Query: 252 VAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310
           V+QIP+ +I+TA+ VIVT+ S T +++G  +  QLFS P+ +  +  +L L  +VPG+P 
Sbjct: 247 VSQIPSFIIATASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPK 306

Query: 311 LVFLLFTAGLLGLAWWIRGREQK----APAEPKPVKMAENNTVVEATWNDVQLEDSLGME 366
           + FL+  AG   + +++  R  K    A A  K  +        E +   +   D + +E
Sbjct: 307 IPFLVL-AGFFWMMFFVLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELE 365

Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426
           VGY+L+P+VD  ++G +L RI ++R + A++MG + P + +RDN+ L+  +Y + ++G E
Sbjct: 366 VGYKLVPLVDPNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQE 425

Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486
           I  G+   G +LAI+ G     + G  T+DPA+GL A+WI  A+KE A+  GYTVV+ ++
Sbjct: 426 IAHGELLTGSYLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPAS 485

Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546
           V+ THL  +I  HA E+  R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL 
Sbjct: 486 VMITHLTEIIKTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLK 545

Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606
           E+VPIRD+ +ILET+A++AP   D  +LT  VR  L R I +++   + ++ VI  D  L
Sbjct: 546 EQVPIRDLSSILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHL 605

Query: 607 ERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661
           E+ +  A+          L+P +A +++ +  E +      G   VLL + ++R  + R 
Sbjct: 606 EQTIANAIHKTEKGNLLALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRL 665

Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +LPQL VLS  E+S    I     +
Sbjct: 666 IENALPQLAVLSYKEISPGVMIDSVGVV 693


>UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae
           RepID=D2QZ28_9PLAN
          Length = 690

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/683 (40%), Positives = 429/683 (62%), Gaps = 9/683 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           + +Q + L  P+ I+  + ++++P+P+ ++DLL   NI +S++VLL  ++ +  LEF  F
Sbjct: 3   RLSQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIF 62

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           PT+LL TTL RL LNVASTR+IL    T G  AAG V+ AFG F+ G    +GI+VFVI+
Sbjct: 63  PTMLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVII 122

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           V+I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+AD
Sbjct: 123 VVIQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQAD 182

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           F+G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M +  +AE +T L+IGDGLV+
Sbjct: 183 FFGAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVS 242

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           Q+PA + S AAG++ TR S  Q++    + QLFSNP  ++++   + +L ++  +P +  
Sbjct: 243 QVPAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPL 301

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT--VVEATWNDVQLEDSLGMEVGYRL 371
           L   AG  GLA  +  +++   A+      A        E    D    D + +E+G  L
Sbjct: 302 LAIGAGCGGLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           I + + +Q G+LL RI ++R+  A ++G + P V ++D   L   +YRI + G  + +G+
Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
             PG++LAI+ G   G +PG  T DPAF   A+WI+S L+E+AQ+ GYT VE + V+ATH
Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L  ++ +HA EL  R   + LLD + +  P + ++LVP  + ++ + +VLQ LL E+V I
Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R++ TILETL + A    DP  LT  VR  L R I+ ++   ++ +HV+ LD  LE  + 
Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
             ++         L+P + +R+  +    L++    G  P++LV+  +R  L      +L
Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661

Query: 667 PQLVVLSNLELSDNRHIRMTATI 689
           P+L VLS  E++ +  + +   +
Sbjct: 662 PRLHVLSFNEVTRDTKVDILGVV 684


>UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria
           RepID=A0LT74_ACIC1
          Length = 708

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/682 (42%), Positives = 438/682 (64%), Gaps = 14/682 (2%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           +++ +   L  P  ++ I+ MMV+PLP  +LD+L   NI  +++VLLV+MF +R L+FAA
Sbjct: 29  VRAKRLGELGIPAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRPLDFAA 88

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FP++LL  TL RLALN++ TR++L+ G+     AGKVV++FGHF+VGG+  +G+V+F+I+
Sbjct: 89  FPSLLLIATLFRLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLVIFLII 143

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           +II F+VIT GAGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+  EAD
Sbjct: 144 LIIQFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEAD 203

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           FYG+MDGASKFV+GDAIA ++I  +N++GGL +G+LQ  +S+G A  +Y+LL++GDGLV+
Sbjct: 204 FYGAMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVS 263

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           QIPAL++S + G+IVTR +++ D+G  ++ Q+ S    + +  A + ++ L+PG+P L F
Sbjct: 264 QIPALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPF 323

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373
           L+     L L   ++   + A  +P     A      EA   ++++E  L + + + L+ 
Sbjct: 324 LILGGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEMRVE-PLELNLAFDLVD 382

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           +VD  + GELL R+R++R+K A E+G + P+V  RDN+DL P  Y I + GVE+  G+A 
Sbjct: 383 LVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEAP 442

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
           PG  LAI  G     LPG AT++P FGL   W+   L++QA++ G TVV+ ++V+ THL 
Sbjct: 443 PGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHLA 500

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            ++  +AA+L  R++ + L +   +  P + E+L P ++ L  + +VLQ LLDE VPIRD
Sbjct: 501 EVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIRD 560

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           +  I E L++ A +  DP  L    R  LG AI+  +      + V+ +D   E+ L+  
Sbjct: 561 LPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYA-QDGRLSVLTIDPLTEQRLVDK 619

Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           L+ G       L+P  A+ L+ + +    R E LG  PVL     LRP L R +R + P+
Sbjct: 620 LRHGEHGSFLALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVRSANPR 679

Query: 669 LVVLSNLELSDNRHIRMTATIG 690
           L VL+  EL  +  +    T+ 
Sbjct: 680 LPVLAYGELGPHLQLETVGTVS 701


>UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes
           RepID=FLHA_BACSU
          Length = 677

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/679 (41%), Positives = 431/679 (63%), Gaps = 12/679 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
             + L+  I ++LI++M+V+P P ++L +L   NI+L+++VLL  M  Q  L+F+ FP++
Sbjct: 2   STRDLSVLISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSL 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RL LNV++TR IL  G       GKVVE FG+F+VGGN  +G+VVF+IL+II 
Sbjct: 62  LLLLTLFRLGLNVSTTRSILSHGE-----GGKVVETFGNFVVGGNVLVGLVVFIILIIIQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGA R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+
Sbjct: 117 FIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIAGI+I++INI+ G+++G+LQ GMS+  AA  +T+LT+GDG+V+QIPA
Sbjct: 177 MDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPA 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+ISTA G++VTR +++ ++G  +  QLF+ P ++ ++AA + LLG+   +  L+     
Sbjct: 237 LLISTATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLA 296

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGMEVGYRLIPMV 375
             L   A+ +    ++     + ++       +++  + VQL   D +  E GY LIP+ 
Sbjct: 297 GLLAFGAYTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLA 356

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL RI  IR++ A E+G + PVV IRDN+ LQP  YR+ +KG E+  G+    
Sbjct: 357 DANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLD 416

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            +LA++P      + G  TV+P+FGL A WI  A+K++A + GYTVV+ ++VV+TH+   
Sbjct: 417 HYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEK 476

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I QHA EL GRQE +QL+D + +  P L E++ P  +++  + KVL  LL EKV IR++ 
Sbjct: 477 IKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 536

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           TI ETLA++  + +D   LT   R AL + IT Q+    + + V+     +E+ +   +Q
Sbjct: 537 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQ 596

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    LEP +++ ++    +   +  +     +LL +  +R  + + L R  P L 
Sbjct: 597 QTEHGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLP 656

Query: 671 VLSNLELSDNRHIRMTATI 689
           VLS  EL  N  ++    +
Sbjct: 657 VLSYNELEANVEVQSIGVV 675


>UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae
           RepID=FLHA_AQUAE
          Length = 678

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/667 (43%), Positives = 445/667 (66%), Gaps = 4/667 (0%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           + ++LILS +++P+PA +LDLL T +I  S+ VLL+  F +  LEF++FP++LL  TLLR
Sbjct: 10  LAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVLLLGTLLR 69

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L+LN+A+ R IL+ GH G  AAGKV+EAFG  + GG+  +G++VF+I ++INF+VITKGA
Sbjct: 70  LSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVINFIVITKGA 129

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY +MDGASKF+
Sbjct: 130 ERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAMDGASKFI 189

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           RGDAIA ++I+ +++VGGLL+G+   GM +  A ++YT+L+IG+GL +Q+PAL++STAAG
Sbjct: 190 RGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPALLLSTAAG 249

Query: 266 VIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           V+ T++S+ +++GE +  +L   P  +L SA VLG +GL+PG+P L FL  +A L G  +
Sbjct: 250 VLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSAILAGAYY 309

Query: 326 WIRGREQKAP-AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384
            ++   ++    E + +   +     E     +   + + +E+GY LIP+VD  Q G++ 
Sbjct: 310 LVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVDESQGGQIP 369

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
            +I+++RK+ A+E G + P++HIRDN+ L+P  YRIL+KG+EI   +  PG +LA+N G 
Sbjct: 370 KKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHYLAVNLGN 429

Query: 445 AAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELF 504
           A G + G  T DPAF + A WI    KE+AQ  GY VV+A TV+ THL+ +I ++  EL 
Sbjct: 430 AKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIKRNLHELL 489

Query: 505 GRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEH 564
            R E  +L++ ++++ PK+ +++VP  V ++ +H+VLQNLL E +P+ D+ TILETLA++
Sbjct: 490 TRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTILETLADY 549

Query: 565 APIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEP-- 622
                DP  LT  VR AL + IT+ +      ++ I L   +E  L++ L+     E   
Sbjct: 550 IEQTKDPDLLTEYVRQALSKRITRMYLT-NGTLYAIALSPKVEAKLVKFLKENREDEFID 608

Query: 623 GLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH 682
            + + LL + +  + +    GA PVLL +  +R  + + +   L +L VLS  EL    +
Sbjct: 609 YVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSYNELEKQVN 668

Query: 683 IRMTATI 689
           I++   +
Sbjct: 669 IKIIGIV 675


>UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae
           RepID=A9BHY7_PETMO
          Length = 710

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/702 (40%), Positives = 436/702 (62%), Gaps = 28/702 (3%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N    +   +   ILI+ I+ +MV+P+P F+LD L   NI +SI++LL  ++ +R L+ +
Sbjct: 2   NFTRIKGLDVIISILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDIS 61

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FP++LL  T+ RLALNV+STR+IL+ G       GKV+ AFG F+VGGN+ +GI++F+I
Sbjct: 62  IFPSLLLVMTIFRLALNVSSTRLILLNGK---NFEGKVIRAFGDFVVGGNYIVGIIIFLI 118

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           LVII F+VITKG  RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EA
Sbjct: 119 LVIIQFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREA 178

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYG+MDGASKFVRGDAIAG++I +IN+VGGL++G+LQ G+++  AAE + LLT+GDGLV
Sbjct: 179 DFYGAMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLV 238

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           AQIPAL+IST+AG+IV+R ++  + G  ++ QL S+  V+ ++  ++ +LGL+  +P   
Sbjct: 239 AQIPALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFP 298

Query: 313 FLLFTAGLLGLAWWIRGREQK--------------APAEPKPVKM-----AENNTVVEAT 353
            L+  AGLL +A+  R  E +                A PK  K                
Sbjct: 299 SLILGAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEE 358

Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
            ++V   D++ +++GY LIP+ D  Q G+LL RI  +RK+ A E+G +   + IRD++ L
Sbjct: 359 VSEVLQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLL 418

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
               Y I ++GVE+G  +  P R LAIN G A   LPG  T +PAFGL A WI+ +LKE+
Sbjct: 419 SSNEYVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEE 478

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
           A  +GYT V+A +V ATHL+  I ++A E+ G +E + L+D +      L + L+P ++ 
Sbjct: 479 AIEKGYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLK 538

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFP 592
           +  L KVL  LL E+V IR++  I E+L E A    ++   L   VR +LGR I +    
Sbjct: 539 MHELKKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKS 598

Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV 647
              E+HV  LD  +E+ L ++++         LEP  ++ L+ +  ++L    M G  P+
Sbjct: 599 DDGELHVSALDPTIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPI 658

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           L+ +  +R   +RF  + +  + +++  E+  +  + +   +
Sbjct: 659 LICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700


>UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A546_GEMAT
          Length = 695

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/692 (43%), Positives = 424/692 (61%), Gaps = 13/692 (1%)

Query: 5   AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64
           +A L +PAN    +   +A  ++++L ++++V+PLP  +LDL    +I LS++VLLV++ 
Sbjct: 3   SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62

Query: 65  TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124
           T   L+F++FP +LL  TL R+ L+V+STR+IL E H     AGKV+EAFG F++GGN+A
Sbjct: 63  TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117

Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184
           +GIV+F+IL  INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R
Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177

Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244
           R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+
Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237

Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           LT+GDGLV Q+PAL+ISTAAG++VT  + +  +G  +  QL ++P  M ++A VLG   L
Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK--PVKMAENNTVVEATWNDVQLEDS 362
           +PG+P   FL   AG   LA      E +             E          D+   D 
Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQIDP 357

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + +EVGY LIP++D  Q G+LL RI  +RK+ A E+G L P + IRD++ L    Y I +
Sbjct: 358 IELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKL 417

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           +G E+   +  P   +A+N G+    + G  TVDP+FG+ A W+ SA + +A+  GY VV
Sbjct: 418 RGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVV 477

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           E +TVVATHL   +   A+EL GRQE Q++++ + +  P L E+++PG V+L+ LH+VLQ
Sbjct: 478 EPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQ 537

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E+VPIRD+ TILE L + A    DP  LT V R AL   I + +      V  I +
Sbjct: 538 RLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITI 597

Query: 603 DTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
              LE  L        +      L P     +L       +   + G P  L+   +LR 
Sbjct: 598 GGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLRV 657

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688
            + R +   LP L V+S  EL     +    T
Sbjct: 658 GVRRLIEPVLPSLPVISLAELPAQITLSSVTT 689


>UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4
           RepID=C9R9X8_AMMDK
          Length = 684

 Score =  728 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/634 (44%), Positives = 404/634 (63%), Gaps = 9/634 (1%)

Query: 57  MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116
           ++LLV +FT   L+F+ FPT+LL  TL RLAL VA+TR+IL     G A+AG V+ AFG 
Sbjct: 54  VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108

Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176
           F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI
Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168

Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236
            E EA++RR  + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++  GM + 
Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228

Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296
            A  +YTLLTIG+GLV QIPAL++ST+AGV+VTR   +   G +   QL + P ++ ++A
Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI-RGREQKAPAEPKPVKMAENNTVVEATWN 355
           A+  LLGLVPG+P+L+ L        L +++   R+++  A   P    E  T  E    
Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348

Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
             Q+E  L +E+GY L+P+   +Q G+LL R+ ++R++ A E+G     + IRDN+ L P
Sbjct: 349 YFQVE-PLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPP 407

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
             Y   ++G+E   G+  PG +LA++P      L G AT +P FGL A WI  A KE+A+
Sbjct: 408 NVYLFRLRGIEAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAE 466

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
             G+TVVE S V+ATHL+  I Q+A  L GRQE ++LLD + ++ P L E+LVPG++ L 
Sbjct: 467 AAGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLG 526

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
            + KVLQ LL+E+VPI+D+ +ILE LA+ A +  DP  L    R AL R ITQQ+    +
Sbjct: 527 EVQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYA-RDN 585

Query: 596 EVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
           ++ V+ L    E  L QA + G  LEP    RLL +  +A+      G  PV+L     R
Sbjct: 586 KLSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGAR 645

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            LL R +    PQ+ V+S  E+     +    T+
Sbjct: 646 LLLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679


>UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia
           RepID=B1ZR28_OPITP
          Length = 712

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/699 (39%), Positives = 417/699 (59%), Gaps = 32/699 (4%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L     + + + +++LP+P  +LD  F  NI LS++VLL  ++ +   EF++FPT+
Sbjct: 2   KRADLVLTAGLFITVLLLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTL 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RLALN++STR++L++G+     AG+V++AFGHF++ GN+ +G VVF+ILV+IN
Sbjct: 62  LLALTLFRLALNISSTRLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVIN 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGAGRIAEV ARF LD +PGKQMAIDA+LNAG+I E +A  RR +V +EADFYG+
Sbjct: 117 FVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFVRGDAIAGI+I ++N++GG  +GVLQ G+S+G + + +TLL+IGDGLV+QIP+
Sbjct: 177 MDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPS 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           LV+S AAGV+VTR S + ++G Q+  Q+F  P  M ++A +L   G++PGMP L F    
Sbjct: 237 LVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPFAGLA 296

Query: 318 AGLLGLAWWIRGREQKAP----------------------AEPKPVKMAENNTVVEATWN 355
           A    L   ++ +E K                        A       A   +       
Sbjct: 297 AFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVR 356

Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
            +   D   +E+GY L+ + + +  G+LL R+  +RK  A+E G + P V +RDN++L+P
Sbjct: 357 KLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEP 416

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
             YR L++G  +  G  +P RWLA+N   +   L G  T +P F L A WI+   K+ A+
Sbjct: 417 NDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAE 476

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
           I GYTVV+ ++V+ THL+  +  +A  L GRQE Q L+D + Q  P L  +L+P +VTL 
Sbjct: 477 INGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLG 536

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
            + +VLQNLL E + I ++  ILE + + A +  +P +L+ ++R  LG     ++     
Sbjct: 537 IIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPG 596

Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650
            V  + +D   E+ L   +Q         L+P     +L +    ++     G P VL+V
Sbjct: 597 VVRAVTVDPRFEQWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVV 656

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +R  L RF   S P+L VL+  EL     I     +
Sbjct: 657 SSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695


>UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus
           F0268 RepID=C2KYZ6_9FIRM
          Length = 718

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/683 (34%), Positives = 391/683 (57%), Gaps = 41/683 (6%)

Query: 43  ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102
           ++D+    N+A+S+M+L++ M  +  LE + FP++LL TTL RL +NV++TR IL  G  
Sbjct: 29  MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNILTNG-- 86

Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162
              ++G +++AFG F+V GN  +G+++++I+V++ F+VITKGA R++EV ARF LD MPG
Sbjct: 87  --GSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144

Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222
           KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD +  ++   IN+VG
Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204

Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282
           G ++G++Q G  +     +Y++ T+GDGLV QIP+L+IS + G+IVTR  ++  + E + 
Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP-- 340
            Q    P  M+++   +G+L L+PGMP L  L    G +   +++  R ++ P   +   
Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324

Query: 341 --------------VKMAENNTVVEATWND----------VQLEDSLGMEVGYRLIPMVD 376
                             E  +    +  D          +   + + M+ GY LIP+ D
Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLAD 384

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
               G L+ RI   R+++AQ++GF+ P  + +RD+  L    Y I +KG EI  G+    
Sbjct: 385 ESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTD 444

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
             LA+ P      + G  T++PA+G+ + WI    +E+A++ GYTV++  +V+ +HL+  
Sbjct: 445 YVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSET 504

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I +HA EL  RQE  +L++ + +  P+L E+  PGV++   L KVL  LL E V I+D+ 
Sbjct: 505 IKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDLE 564

Query: 556 TILETLAEHAPIQ----SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           TI+ET+ E          D  ++   VR +L R IT+ +      + VI LD  LER ++
Sbjct: 565 TIVETMFECISETGLPVKDTDQIVEKVRASLKRTITRMYC-EDGNMKVITLDAGLERTMV 623

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
            +L  G       L P L   L+ Q  E   +   L +PP++L +  +R      + +  
Sbjct: 624 NSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFY 683

Query: 667 PQLVVLSNLELSDNRHIRMTATI 689
           P + VLS  E++ N  I+   ++
Sbjct: 684 PNVRVLSFNEVASNVQIQAIGSL 706


>UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE9_SALRD
          Length = 693

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/676 (44%), Positives = 436/676 (64%), Gaps = 18/676 (2%)

Query: 27  LILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRL 86
            I+ IL MMV+PLP+++LDL    +IALS+ VLL + + +R LEFA FP +LL TTL RL
Sbjct: 4   AIVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTLFRL 63

Query: 87  ALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAG 146
           +LNVASTR+IL     G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITKG  
Sbjct: 64  SLNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITKGTE 118

Query: 147 RIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVR 206
           RI+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+KFVR
Sbjct: 119 RISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATKFVR 178

Query: 207 GDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGV 266
           G+A+AGILI  IN+VGGL++GV Q  M +G AA ++ LL+IGDGLV+QIPAL++STAAG+
Sbjct: 179 GEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTAAGI 238

Query: 267 IVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW 325
           IV+R S ++  +  +M  QL   P  +L++   LG++G VPG+P + F L +AG+L L W
Sbjct: 239 IVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVL-LLW 297

Query: 326 WIRGREQKAP-----AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
           ++R +E+KA         +  +  +     E   +D+ L D L +E+GY LI +VD  Q 
Sbjct: 298 YLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPDQG 357

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
           G+LL R++ +RK+ A+EMG + P V IRDN+D+   +Y I ++G  IG G   PG  LA+
Sbjct: 358 GDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKLAL 417

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
            P        G    DP FGL A+W+      +A+  G TV+E   V++THL   + ++A
Sbjct: 418 LPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRKNA 477

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
             L  RQE +++LD+V +  P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TILET
Sbjct: 478 YRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTILET 537

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-- 618
           LA+HA        LT   R AL   IT+++   +  +    +D  LE+ LL+  + GG  
Sbjct: 538 LADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGGLD 597

Query: 619 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
               GL+P  AD L+    E  +        P+LL++  LR  + +FL   +  + VLS 
Sbjct: 598 ANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVLSY 657

Query: 675 LELSDNRHIRMTATIG 690
            +L+ +  + +   + 
Sbjct: 658 NDLTPDAPVDIVDQVS 673


>UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria
           RepID=FLHA_HELPJ
          Length = 733

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/726 (40%), Positives = 433/726 (59%), Gaps = 40/726 (5%)

Query: 2   SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
           S LA     P   +  Q + LA  + ++ IL+++++PLP F+LD L T +IALS++++L+
Sbjct: 6   SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            ++  +  +F+AFPT+LL  TL RLALNVA+TR+IL +G+ G +A   ++ AFG F V G
Sbjct: 66  GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA
Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q  MS+  +A +
Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +T+LTIGDGLV QIPAL+I+TA G++ TR   + ++D   +++ QL +    +++  A L
Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA-----------------PAEPKPVK 342
            L   +PG+P           L +AW I    +                     +P   K
Sbjct: 306 LLFATIPGLPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSK 365

Query: 343 MAENNTVV------------EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390
           +  +                E   ++V   + L + +GY+LI + D +Q G+LL RIR I
Sbjct: 366 IKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGI 425

Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450
           RKK A + GFL P + IRDN+ L P  Y I +KG+ IG G   P ++LA+N G     + 
Sbjct: 426 RKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIE 485

Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510
           G  T +PAFG++A+WI++  KE+A IQGYT+++ STV+ATH + L+ ++A +   + E +
Sbjct: 486 GIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVK 545

Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQS 569
            LL+R+A++ P + E+     +    +  VLQ LL EK+PI+DM TILET+ + AP +Q+
Sbjct: 546 SLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQN 603

Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624
           D + LT  VR  L R IT  +      +  +   T  E+ LL  L+  G      L  G 
Sbjct: 604 DVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE 663

Query: 625 ADRLLAQTQEALSRQEMLGAPPVLL-VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
             +L+    E   +    G  PV+L V   LR  LS  + ++   +VVLS+ EL  N + 
Sbjct: 664 LQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNF 723

Query: 684 RMTATI 689
               TI
Sbjct: 724 EALGTI 729


>UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria
           RepID=Q3SJM4_THIDA
          Length = 692

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/667 (50%), Positives = 470/667 (70%), Gaps = 3/667 (0%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++  +R L+F+ FPT+LL T
Sbjct: 16  VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TLLRL+LNVASTRIILM+GHTG  AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI
Sbjct: 76  TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA
Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A   Y LLT+GDGLV QIPAL+IS
Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           TAAG++V+R S++QD+  +   Q+F  P  + ++AAVL  LG++PG P++ FL   A L 
Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNT-VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
            LA W+    + A  +  P+   E     V+ TW+D+   D L +EVGYRLIP+VD  Q 
Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
           G  L RI   R++FA +MG + P++ +RDN+DL+P  +RI +KGV++  G+   G+ LA+
Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
           + G   G + G   VDP   L  +WI++A  E+A+++G+ V+E + ++A  +  +  QHA
Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
            EL GR E QQLLD +A+  P L ED+ P  + LTT+  +LQ L+ E VPIRD RT+ ET
Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618
           LA  AP   D  +L   VR ALGR+I  + F G D + VIGL    E  LL  +  +G  
Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
            L P   D L    ++A++  E  G PPVLL +  LR +LSR LRR+LP+L V++  E+ 
Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLRAILSRLLRRTLPRLAVIAYAEVP 675

Query: 679 DNRHIRM 685
            ++ +++
Sbjct: 676 ADKTVQV 682


>UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria
           RepID=Q01PP7_SOLUE
          Length = 699

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/673 (42%), Positives = 417/673 (61%), Gaps = 10/673 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P+ +L I+  ++ PLP F+LDLL   +I +S+ VL+V+++  R +EF +FPT LL  
Sbjct: 31  LAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEFTSFPTTLLLL 90

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F++L+ I ++VI
Sbjct: 91  TLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFLVLIAIQYVVI 150

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
             GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR  +  EA+FYG+MDGA
Sbjct: 151 NHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATEAEFYGAMDGA 210

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           S+F + DA+A ILI  INI+ G L+GV QHGM    A E+YT+LTIGDGLV  IPAL+IS
Sbjct: 211 SRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGLVTVIPALMIS 270

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            + G+IVTR S++  +G +   Q+  N   +LL+A VL  L  +PGMP L FL+   G  
Sbjct: 271 ISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKLPFLVLGFGAG 330

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
              W +R  E    A P   +        + +   +   + L +EVG  LI +V+  Q+ 
Sbjct: 331 AGGWRMRKTELAQIAAPP--EDTGKPAPAKDSVESLLRVEPLAIEVGLGLIGLVEGAQES 388

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            LL RI +IR++ A ++G+L P V + DN+ L+   Y I +KGVEI   +   G  LAI 
Sbjct: 389 PLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYELPQGCELAIA 448

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
            G A+  L G+AT DPAFG+NA WI +   ++A+  GYTVV++ +V+ THL+ +I ++A 
Sbjct: 449 TGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTHLSEIIRRYAH 508

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           ELF RQ+A++LLDRV  E PK+ ED+VP ++ L+++ +VLQNLL E+V IRD  +ILE L
Sbjct: 509 ELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSIRDAVSILEAL 568

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG--- 618
            E      +P  LT  VR A+ RA+ + +     ++    +D  +E  +  A++ G    
Sbjct: 569 GEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVEAAVEHGEQNS 628

Query: 619 --GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
              L P     +L +    +   E    P V + +   R  L +    ++P L  L++ E
Sbjct: 629 HIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTMPNLFFLAHNE 685

Query: 677 LSDNRHIRMTATI 689
           +     ++    I
Sbjct: 686 VPPGVRVQSLGNI 698


>UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria
           RepID=B5ZM53_GLUDA
          Length = 731

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/698 (40%), Positives = 432/698 (61%), Gaps = 16/698 (2%)

Query: 4   LAAMLRLPANLKSTQWQ------ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57
           L+A        ++T W+       +   + ++++L+++++PLP FILD+  + +I  S++
Sbjct: 37  LSAETLRSGGWRATSWRSLVPGTDVGLALGVVVLLAILIIPLPTFILDMGLSLSITSSVL 96

Query: 58  VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117
           VL+VA+F +RTL+F +FPT+LL TTLLRL+L +A+TR+IL  G  G  AAG VV AFG F
Sbjct: 97  VLMVALFLERTLDFTSFPTLLLLTTLLRLSLEIATTRLILSHGSEGTYAAGHVVAAFGGF 156

Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177
           L+GG+  IG +VF IL+++NFMVITKG+GRIAEV ARF LD MPGKQMAIDADL++G I 
Sbjct: 157 LMGGDLFIGGIVFCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAIN 216

Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237
           E  A+ +R E+  E+ FYG+MDGA+KFVRGDAIAG++I  INIVGGL +G+L+H M +  
Sbjct: 217 ERTARAKRKELEDESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSE 276

Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAA 297
           AA ++T LT+GDGLV+QIPAL++STAAG++VT+  +D      +V QL  NP  + ++  
Sbjct: 277 AASTFTTLTVGDGLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGG 336

Query: 298 VLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV 357
           +  L  ++PG+P L FL+   G  G+  W+R +      +    +++   T      +++
Sbjct: 337 LSALFAIMPGLPALPFLVIAVG-AGIGAWMRHKTPVKDGDGDVTQISPQPTAP--PISEM 393

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
              D L +E+G+ L+P+    ++ +L  +I+++R+  A E+GF+ P V I+DN+ L    
Sbjct: 394 LKLDLLRLELGFGLLPLTS-GENPQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDN 452

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
           Y I +K +EIGSG+  PG+ +A++P   A  LPG+ T +PAFGL A+WI+ +LK +A   
Sbjct: 453 YVIKLKEIEIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAM 512

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
             T+V+ ++V+ THL+  + Q+  +L      Q LLD + +E  KL  DL+P  V L+T+
Sbjct: 513 KCTIVDPASVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTI 572

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDE 596
            +VLQ+LL E+V IRD+ TILE++ E   +       LT  VRV L R I      G   
Sbjct: 573 QRVLQSLLAERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGY 632

Query: 597 VHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651
           + +I L    E   +  + G        + P + ++ + + +E  +     G  PV++V+
Sbjct: 633 IPMITLSAEWEAEFMAHITGQADDRRLAMPPSMLNKFVGKLREVFNTVSASGEIPVVVVS 692

Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +R  +   + R  P + VLS  E+     I+  ATI
Sbjct: 693 TPVRDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATI 730


>UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae
           RepID=A3ZZP0_9PLAN
          Length = 695

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/686 (42%), Positives = 425/686 (61%), Gaps = 11/686 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
              + + L  P+ I+  + ++++PLP ++++LL T NI   +++LL  ++ Q  LEF  F
Sbjct: 7   ALERIRDLILPVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVF 66

Query: 75  PTILLFTTLLRLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           P++LL TTL RL LNVA+TR+IL +    G  AAG V+E+FG F+ G   A+GI++F+I+
Sbjct: 67  PSLLLATTLARLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIII 126

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           ++I FMVITKGA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+AD
Sbjct: 127 IVIQFMVITKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQAD 186

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           F+G+MDGASKFVRGDAIAGI+I +INIVGG ++G LQ GMS+  AAE YT LTIGDGLV+
Sbjct: 187 FFGAMDGASKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVS 245

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           Q+PA +IS AAG++VTR S   ++  + V QL S P  ++++ A LGLL +  G+P +  
Sbjct: 246 QVPAFLISLAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPL 304

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKM----AENNTVVEATWNDVQLEDSLGMEVGY 369
           L    G LG+A++I+ ++++  A+ +  +      E     E    D    D + ME+G 
Sbjct: 305 LTLCGGCLGIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGV 364

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
            L+ +    + G+LL R+  +R+  A E+G + P V IRDNM L   +YRI +    +  
Sbjct: 365 GLVRLAAPDRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAE 424

Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489
              YP R LAI    + G LPGE T DPA+   A+WIE  L+ QA++ GYT+VE S+V+A
Sbjct: 425 NTIYPDRLLAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLA 484

Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549
           THL  +  +HA EL  R   + LLD +  E P + ++L+PGV+ L  +  VL NLL E+V
Sbjct: 485 THLQRVAKKHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEV 544

Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609
           PIR +  ILETL +HA    D   LT  VR  L R I  ++   ++++ V+ LD  ++  
Sbjct: 545 PIRQLAIILETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDR 604

Query: 610 LLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665
           +   +    G    + P   +         + +   +G PP++LVN  +RP L +     
Sbjct: 605 IAAGIDTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNH 664

Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691
           +P L+VLS+ E++ +  I     I  
Sbjct: 665 IPDLIVLSHNEVTRDTLIESVGIISD 690


>UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIY8_THEYD
          Length = 683

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/675 (46%), Positives = 464/675 (68%), Gaps = 8/675 (1%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             +   + I+LIL  M++P+P F+LDL  T +I LSI+++LVA + ++ L+F+ FP++LL
Sbjct: 9   SDVLVAVGIILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVLL 68

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
             TL+RL+LN+ASTR+IL  G  G  AAGKV++AFG F+V GNF +G++VF+ILVIINF+
Sbjct: 69  IATLMRLSLNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINFI 128

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           VITKGAGRIAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+MD
Sbjct: 129 VITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAMD 188

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GASKF+RGDAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL+
Sbjct: 189 GASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPALI 248

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
            STAAG++V+R +T+ ++G+ ++ QLF NP  +  ++ VL LLGL+PG+P+L F++    
Sbjct: 249 TSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAVV 308

Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
              +A+ +  +E+K      P  + E    +EA    +   D + +E+GY LIP+V+ + 
Sbjct: 309 SGAIAYLMISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLVEGES 368

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
              L+ RIRS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + +   GR+LA
Sbjct: 369 S--LVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFLA 426

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           I        + G  T DPAFG++A+WIE     +AQ+ G+TVV+AS+V+ THL  ++  +
Sbjct: 427 IGARPGQD-IDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKNY 485

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
             EL G+QE Q+LLD +A+  P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TILE
Sbjct: 486 GYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTILE 545

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG- 618
           TL+E+A +  DP  LT  VR AL R IT+        +  I  +  LER  +++LQ    
Sbjct: 546 TLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTPQ 605

Query: 619 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
                 +P L ++ +   ++      + G  PVL+ + ++R  + R + R  P L VLS 
Sbjct: 606 GINFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLSP 665

Query: 675 LELSDNRHIRMTATI 689
            E++    I M  T+
Sbjct: 666 QEIAPGVKILMFGTV 680


>UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales
           RepID=A5V5S8_SPHWW
          Length = 715

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/677 (45%), Positives = 443/677 (65%), Gaps = 9/677 (1%)

Query: 23  AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82
             P+  L+++ +MV+P+P+F+LD+ F  NI +S+ VL+VA+   + L+F++FPT+LLF T
Sbjct: 20  ILPLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFAT 79

Query: 83  LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142
           LLRL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VIT
Sbjct: 80  LLRLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVIT 139

Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202
           KGAGR++EV ARF LD MPGKQMAIDADLNAGL+  +EAK RR EV  EADFYGSMDGAS
Sbjct: 140 KGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGAS 199

Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262
           KFV+GDA+AG+LI+VINI GGL++G L HG+S+  AA +Y +L IGD LVAQ+PAL++S 
Sbjct: 200 KFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSI 259

Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           AA  IVTRVS+  D+  Q+ +Q F +       AA+LGLLG+VPGMP+++ L   A    
Sbjct: 260 AAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMIILSAAAVAGF 318

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEAT----WNDVQLEDSLGMEVGYRLIPMVDFQ 378
           +AW +   ++   A       A N     +     WN++    +LG+E+GY L+ +VD +
Sbjct: 319 VAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGLELGYGLVGLVDER 378

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           +   L+ RI  IR++ ++EMGF+ P+V +RDN+ L P  YRI + GV +G  + +P + L
Sbjct: 379 KGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMGEDECFPEQLL 438

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A++ G   G + G    DP+FGL A+WI    +  A + GYTVV+ +TVVATHLN +I+ 
Sbjct: 439 ALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVVATHLNQVIAA 498

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
            AA+LFG  EAQ+LLD + +  P+L   L P  ++L  +    + LL E VP++D R I 
Sbjct: 499 TAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEGVPLKDFRRIA 558

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           E + + A   +D   L   +R  +G  I Q   P K  + V+ LD  LE LL QA++   
Sbjct: 559 EAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLESLLAQAVRTSP 618

Query: 619 G----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
           G     EP LA+R++A   EA            ++ +   R  L+R L+  LP+  V+S 
Sbjct: 619 GASHPFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIARRALARLLKPHLPETPVMSF 678

Query: 675 LELSDNRHIRMTATIGG 691
           LE+ D + + + A +GG
Sbjct: 679 LEIPDGKAVEVAAVVGG 695


>UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria
           RepID=FLHA_CAUCR
          Length = 700

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/693 (40%), Positives = 419/693 (60%), Gaps = 6/693 (0%)

Query: 3   NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62
           N ++M    + L       +   + ++ I+ ++++P+PA +LD+L   ++  S+++L+ A
Sbjct: 8   NASSMPSAKSLLDGLMRGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTA 67

Query: 63  MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122
           +  ++ LEF +FPT+LL TTL RL LN+ASTR+IL  G  G   AG V+EAFGH ++ GN
Sbjct: 68  ILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILSHGQEGTGGAGAVIEAFGHLMMQGN 127

Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182
           F IG++VF+IL+++NFMV+TKG+GRIAEV ARF LD MPGKQMAIDADL+ GLI +DEAK
Sbjct: 128 FVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAK 187

Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242
            RR E+ QE+ F+G+MDGASKFV+GDAIAG++I  INI+GG+++GV+QH M  G AA +Y
Sbjct: 188 IRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTY 247

Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302
           T++TIGDGLV+QIPAL+IS AAG++V++   +    + +  QL  NP  + + +A  G++
Sbjct: 248 TIMTIGDGLVSQIPALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGII 307

Query: 303 GLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA-EPKPVKMAENNTVVEATWNDVQLED 361
            L+PGMP   F         LA+      +K  A +P  ++ A  +   E   +     D
Sbjct: 308 ALIPGMPIFPFAAMALAAGALAYKRVQDAKKPKALDPADLEAAAPSEPEEEPISASLAID 367

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            + +E+GY L+ +++     +L  +IR++RK  A E GF+ P V I DNM L    Y I 
Sbjct: 368 DVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIR 427

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           +K +E G+G+   G  + ++P      LPGE   +PAFGL A WI   L+E+A  +GYTV
Sbjct: 428 IKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTV 487

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           V+ +TV+ THL  ++ ++ A+L    E Q+LL  + +   KL +DL+PG VT TT+ +VL
Sbjct: 488 VDPATVLTTHLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVL 547

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q+LL E+V IRD+  ILE + E AP  +   +L   VR  L R +          + +I 
Sbjct: 548 QSLLRERVSIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIIT 607

Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           L    E+   +AL G G      L P      +   +++  R  + G  PVLL +  +RP
Sbjct: 608 LSADWEQAFAEALIGPGDDKQLALPPSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRP 667

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            +   + R   Q VV+S  E+     ++    +
Sbjct: 668 YVRSIIERFRGQTVVMSQNEIHPRARLKTVGMV 700


>UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria
           RepID=LCRD_YERE8
          Length = 704

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/700 (32%), Positives = 391/700 (55%), Gaps = 33/700 (4%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  + + +   +L+L ++ MMVLPLP  +LD+L   N+ +S+++L++A++    L+F+AF
Sbjct: 11  RIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAF 70

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P +LL TTL RLAL+V++TR+IL++     A AG++V  FG+F+VGGN  +GIV+F+I+ 
Sbjct: 71  PAVLLVTTLFRLALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIIT 125

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ F+VITKG+ R+AEV ARF LD MPGKQM+ID D+ AG+I  +EA++RR+ + +E+  
Sbjct: 126 IVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQM 185

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           +GSMDGA KFV+GDAIAG++I+ +NI+GG+ +GV Q G++   A + Y++LT+GDG+V+Q
Sbjct: 186 FGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQ 245

Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +PAL+I+  AG+IVTRVS++   D+G  +  Q+ + P  ML+   +L L GL+PG P + 
Sbjct: 246 VPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVT 305

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPK------------PVKMAENNTVVEATWNDVQLE 360
           FL+  A L+G   ++  R+Q    E                          A    +  +
Sbjct: 306 FLIL-ALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGRLGEQ 364

Query: 361 DSLGMEVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           ++  M V   LI +   QQ+      L   +  +R+    ++G   P +H+R N  +   
Sbjct: 365 EAFAMTVPL-LIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEG 423

Query: 417 RYRILMKGVEIGSGDAYPGRWLAIN--PGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474
            Y I ++ V +  G+   G  L            +P E            W+    +E+ 
Sbjct: 424 EYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERL 483

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           +         S V+  HL+H++ ++A +  G QE + LL+++     +L ++ V  +V L
Sbjct: 484 EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPL 542

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594
             + ++LQ L+ E + IR+MR+ILE + E    + D  +LT  +R +L R I  ++  G 
Sbjct: 543 QRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGN 602

Query: 595 DEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLL 649
           + +     D  +E  +  A++         L+P + + LL Q ++ +     + + PVL+
Sbjct: 603 NILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLI 662

Query: 650 VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           V+  +R  + + +      L VLS  EL+   +I+    +
Sbjct: 663 VSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702


>UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria
           RepID=A1T0L5_PSYIN
          Length = 695

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/697 (40%), Positives = 433/697 (62%), Gaps = 19/697 (2%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
           +L+   N+K +    LA P  +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+  T+
Sbjct: 3   LLKKFKNIKLS----LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTK 58

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
           R L+F+ FPT+LL  TL+RL LNVASTRI+L+EGH G  AAG V++AFG  ++GGN+ +G
Sbjct: 59  RVLDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVG 118

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
           +VVF+IL+IINF+VITKG  RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR 
Sbjct: 119 MVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQ 178

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
           E   EA+FYGSMDGASKFVRGDAIAG+LI+ IN++GG+L+G+  H MS   + +++ LLT
Sbjct: 179 ETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLT 238

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305
           IGDG+VAQIP+L+++T+A VIVTRVS +D D+ + +  Q+ S PSV+  SA V+ ++GLV
Sbjct: 239 IGDGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLV 298

Query: 306 PGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT--WNDVQLEDSL 363
           P MP+L FL+F A L  + W     ++++  E     +    +  E    W  V   + +
Sbjct: 299 PNMPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPI 358

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
            + +G++L+ +++ +    LL  I+  RK  ++E+GFL P V IRDN+ L+P  Y I + 
Sbjct: 359 TLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFID 418

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           G E+  G    G  +A++   + G++ G    DPA+ + A+WI    K  A   GY V+ 
Sbjct: 419 GEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVIS 478

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
            + V+ATH+N ++S + A +F   + + + D++    P+L+E L   V     L  +++N
Sbjct: 479 LADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQ-IIKN 537

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LL ++VP+++ + I  T+ +      DP  +++ VR AL R I     P    + +  L 
Sbjct: 538 LLIDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLS 597

Query: 604 TPLERLLLQALQGGGG-----------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           + L+ +L  A+                ++P L  +L         +    G  P+LLV+ 
Sbjct: 598 SELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSP 657

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            +RP++S+F R     L+VLS  E++D+  I     +
Sbjct: 658 TVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694


>UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira
           RepID=Q04SD6_LEPBJ
          Length = 705

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/679 (38%), Positives = 403/679 (59%), Gaps = 21/679 (3%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             +   +  + I++M+V+PLP  ILD+L   ++A+ ++VLL ++      +F+ FP++LL
Sbjct: 9   SDVILGVGAVAIVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIFPSLLL 68

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVVFVILV 134
            TTL RLALNV++TR IL +G    A    V++AFG F++G       + +G ++F+ILV
Sbjct: 69  ITTLYRLALNVSTTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFIIFIILV 125

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           ++  +VITKGA RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR  +  E DF
Sbjct: 126 LVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIEAEVDF 185

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YGSMDGASKFV+GD  AG++I  IN++GG+++G    G S   A E+Y   TIGDGLV+Q
Sbjct: 186 YGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGDGLVSQ 245

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IPAL+ + A G+IVTR  ++ D+  Q  +QLFSN  V+ + A  LG    +PG+P +  +
Sbjct: 246 IPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLPFIPLV 305

Query: 315 LFTAGLLGLAWWIRGR-EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373
           + +AG+  L + +    +++  +  K  K +  +   +  + +++  D + +EVGY LIP
Sbjct: 306 ILSAGIAYLGYSLEQTVKEQLESIEKKEKESGQDRKPKDFYEELR-TDPIEIEVGYHLIP 364

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           +VD  Q G LL +I ++RKKFAQ+ G + P V I DN+DL P  Y I + G E+G     
Sbjct: 365 LVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGISTVK 424

Query: 434 PGRWLAINPG-TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
           P + +A+N     A ++ GE  ++P+FG  A WI S  K +A+ +GYTVV+ASTVV THL
Sbjct: 425 PDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVVVTHL 484

Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL-VPGVVTLTTLHKVLQNLLDEKVPI 551
             L++ HA+ L GR+E ++LLD      P L  +L       L  + +VLQNLL E + I
Sbjct: 485 KELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQNLLREGLGI 544

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R++  ILE++A +     +P+ LT +VR ++ R + + +     ++ VI L++ +   L 
Sbjct: 545 RNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRILDRLN 604

Query: 612 QALQGG-------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664
           +++            L P    +L+    E      M G  P+ +VN  +R   S  L +
Sbjct: 605 KSITQDRIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSYLLAK 664

Query: 665 SLP--QLVVLSNLELSDNR 681
             P     VL+  E+  + 
Sbjct: 665 EFPPRNFGVLAYEEIHSSV 683


>UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms
           RepID=FLHA_BRUME
          Length = 723

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/681 (36%), Positives = 407/681 (59%), Gaps = 12/681 (1%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             +   + I++IL+++ LP+PA +LD+   F+IA S+++L+VA++ QR L+F+AFPT+LL
Sbjct: 45  SDIGLAVGIIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWIQRPLDFSAFPTVLL 104

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
             T++RL+LN+A+TR+IL  G+ G  AAG V+  F  F++GG+F IG+VVF IL+I+NF+
Sbjct: 105 IATMMRLSLNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVIGLVVFAILIIVNFL 164

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           VITKGA RIAEVGARF LD +PGKQMAIDADL++GLI E EA++RR E+ +E+ F+GSMD
Sbjct: 165 VITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELEEESSFFGSMD 224

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GASKFVRGDAIAG++I  +NI GG+++G  +HGM +  AA+ +T L++GDGLV QIPAL+
Sbjct: 225 GASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLVTQIPALI 284

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
           +S AAG++V++  T     + +  QL + P  +L++A +L +LG++PG+P   F L    
Sbjct: 285 VSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFPFFLLGGA 344

Query: 320 LLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376
           +  +       + R+++A A     K  E       +       + + + +G +L   + 
Sbjct: 345 MAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQIELCLGKQLSARLI 404

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436
             Q+ EL  R+  +R+KFAQE GF+ P + + D++ L P  YRI + G  + S +   G 
Sbjct: 405 ASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGTAVASHELRVGE 463

Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
            L +       ++PGE   +PAFG+ A  +        + +GY  V+  +V+ THL+ ++
Sbjct: 464 ILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNLSVLLTHLSEIV 523

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
             + A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  VL+ LL E++ IR++  
Sbjct: 524 RNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLLAERISIRNLHL 583

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616
           ILE +AE AP+   P  +   VR+ + + I          ++V+ L    + +  Q+L+ 
Sbjct: 584 ILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLGNRWDLVFHQSLKR 642

Query: 617 GG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
                     ++P L ++   +   A+ +    G   VL+ +   RP +   + R    L
Sbjct: 643 DAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARPYIRMIIERLFATL 702

Query: 670 VVLSNLELSDNRHIRMTATIG 690
            VLS++E++    ++    I 
Sbjct: 703 PVLSHVEIARGVEVKSLGAIS 723


>UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria
           RepID=Q1D9J0_MYXXD
          Length = 707

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 403/707 (57%), Gaps = 31/707 (4%)

Query: 12  ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           +N   +++  +   ++++ I+ MM++PLP  +LD+L T NI++S+++LLV+++    L  
Sbjct: 6   SNSFLSKYSDIVLAVVVVAIVGMMIVPLPTLLLDVLLTLNISISVVLLLVSLYVPAALHL 65

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
           + FPT+LL TT+ RLAL +++TR+IL+ G       G+VV AFG+F+V GNF +G ++F+
Sbjct: 66  SVFPTLLLITTMFRLALTISTTRLILLTGDP-----GEVVVAFGNFVVQGNFVVGAILFI 120

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK+R ++ +E
Sbjct: 121 ILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRRDLERE 180

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
           +  +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YTLLTIGDGL
Sbjct: 181 SQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLTIGDGL 240

Query: 252 VAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           V  IPA+++ST AG+IVTRV+ +++   +G  M +QL + P  + ++A +L +LGLVPG+
Sbjct: 241 VGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLGLVPGL 300

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE---------NNTVVEATWND--- 356
           P + F L   G    AW +  ++Q+A          E              EA   D   
Sbjct: 301 PKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALNPDSEL 360

Query: 357 -VQLEDSLGMEVGYRLIPMVDFQQDGE--LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
            + +   + +EV   L+P VD +QD    L   I  +R     E+G   P V  R N  L
Sbjct: 361 FIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRARGNGSL 420

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALK 471
            P  Y+I +  V + +G A  G  L  +         + G   V+PA    A W+    +
Sbjct: 421 PPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWVPEQYR 480

Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531
           +  +  G T  +    +  H   ++ ++A E  G QE Q +L+++ +  P + +++VP V
Sbjct: 481 DTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKEVVPKV 540

Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591
           V +  L  +LQ L++E++ IRD+R IL+ LAE+  +++D   LT  VR A  R I+ ++ 
Sbjct: 541 VNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYISHKYA 600

Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPP 646
            G   + V  LD  +E  +  +++         LEP LA  ++   +            P
Sbjct: 601 RGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECGHLPPSAQRP 660

Query: 647 VLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692
           V+L    +R  + + L     P   VLS  ELS   +I+  A I  +
Sbjct: 661 VILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707


>UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales
           RepID=Q5HUS5_CAMJR
          Length = 724

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/703 (37%), Positives = 414/703 (58%), Gaps = 36/703 (5%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           + + L     ++ IL+++++PLP+ ILD     +IALS++++L++++  +  +   FPT+
Sbjct: 23  KAKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTL 82

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           +L  TL RL+LN+A+TR+IL EG  G  A  +++ AFG F+VGGN  IG++VF ILV+IN
Sbjct: 83  ILIITLFRLSLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLIN 142

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           FMV+TKG+ R++EV ARF LD MPGKQMAIDADLNAGLI E  A+ RR EV  EA+FYG+
Sbjct: 143 FMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGA 202

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDG+SKF++GDA+AGI+I +INI+GG L+G  QH M++  AA +YT+LTIGDGLV+QIP 
Sbjct: 203 MDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPG 262

Query: 258 LVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316
           L+ STA  +I+TR S  +++  E  + QL S    +L+   VL +  LVPG+P L     
Sbjct: 263 LITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFM 322

Query: 317 TAGLLGLAWWIRGRE---------QKAPAEPKPVKMAENNTVVEAT-------------- 353
               L L +  +  +         +K+         +       A               
Sbjct: 323 ALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEH 382

Query: 354 -WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD 412
             ND+   + L +E+GY LI +     + EL  RIRS+R+  A+ +GFL P + IRDN+ 
Sbjct: 383 KINDILKVEILELELGYGLIKLA----ENELTERIRSMRRSIAESLGFLMPKIRIRDNLR 438

Query: 413 LQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKE 472
           L+P  Y   +KGV I S + YP ++LA++ G     + G AT +PAF  +A+WI++ LK+
Sbjct: 439 LKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKD 498

Query: 473 QAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVV 532
           +A + GY V++ ++V++TH++ LI  HA+EL  RQE Q LLD+V  + P + E  + GV 
Sbjct: 499 EATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGAL-GVA 557

Query: 533 TLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP 592
            ++ + K+L++LL   +PI+DM TILE++++ A +      +   VR +L R IT  +  
Sbjct: 558 PVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLD 617

Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPP- 646
            K  + +  LD+    +L++ +Q   G     L       L+   +  ++        P 
Sbjct: 618 DKGNLDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPF 677

Query: 647 VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +L V   LR  ++         +VVLS  E+++N +      I
Sbjct: 678 ILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720


>UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular
           organisms RepID=Q2SEX4_HAHCH
          Length = 697

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/675 (38%), Positives = 396/675 (58%), Gaps = 15/675 (2%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             LA  + ++ IL ++  P+P+ +LD+L   N +  +++LL+  F  + L F+ FP++LL
Sbjct: 15  SELALVLGMVGILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLLL 74

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
             TL RL+LN+A+TR+IL +G      AG+V+ A G ++VGGN+ IG+VVF+IL+++ ++
Sbjct: 75  IATLFRLSLNIAATRLILSDG-----DAGEVINAIGTYVVGGNYVIGLVVFLILIVVQYV 129

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           V+T GA R+AEV ARF LD MPGKQM+IDAD+N GLI E EA++RR  + +EA FYG+MD
Sbjct: 130 VVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAMD 189

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GASKFV+GDAIAGILI++I+I+GGL VG+ Q G+S G A  SYTLLT+GDG+V QIPALV
Sbjct: 190 GASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPALV 249

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
           ISTA G+I+TR +TD  +G+++  Q+   P  +++    L  L L+PG+P L   +  + 
Sbjct: 250 ISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVASL 309

Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           +  L  +   + +   AE       +    +        LE SLG  +   L        
Sbjct: 310 MAALVVYAFKQNKYQEAEDNVEDQEDAEKDIYEELKVEPLEISLGPSIAGYL-----GAS 364

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
           +G L+  I+ +RK+ A E+GF+ P V I          Y++ + G ++  G+ Y  R LA
Sbjct: 365 EGALMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRILA 424

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           I+       LPG +  DP +GL A+WIE  LKE+A+    T+V+  TV+ TH+N  +   
Sbjct: 425 ISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRLQ 484

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           A  L  R E ++L+ RV      L E+LVP  +TL+ + KVLQ LL EKV IR++  I E
Sbjct: 485 APALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIAE 544

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
            L +   +  D  +L   VR  LG  I Q        +HV+ +D  +E+L+   ++    
Sbjct: 545 ALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTEQ 604

Query: 620 -----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
                ++P L +++L+     + +   +G  PVL+ +  +R  + +   R LP L VL+ 
Sbjct: 605 GASLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLAL 664

Query: 675 LELSDNRHIRMTATI 689
            E+    +I+  + +
Sbjct: 665 TEVPVGMNIKSFSIV 679


>UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG1_9GAMM
          Length = 703

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/700 (43%), Positives = 458/700 (65%), Gaps = 17/700 (2%)

Query: 1   MSNLAAMLRLPANLKSTQW---QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57
           M +     +  A++  ++W   Q L GPI++++IL+M+V+PLP  +LD+LFTFNI  S++
Sbjct: 1   MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60

Query: 58  VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117
           +L  A +T++ L+F+AFPT+LL  TLLRLALNVA+ R+IL++G+ G  AAG V+E+FG F
Sbjct: 61  ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120

Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177
           +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I 
Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180

Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237
           +++AKKRR  ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+  
Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240

Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296
           AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G  +  QLF  N   +L++A
Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN- 355
            +LG+ G++PGMP+  FLL+      + + ++  + +   +      AE   VVE   + 
Sbjct: 301 IILGITGIIPGMPHWAFLLYALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPIDA 360

Query: 356 -DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414
             ++  + +G+ +GY+LIP++  Q+DGEL  R+  +R++ ++  GF+ P +H+ D++ L+
Sbjct: 361 RVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTLR 418

Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474
           P  YRI + G+    G+ +  + LAI  G+    + G  T DP +G  A WI     + A
Sbjct: 419 PGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDA 478

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           ++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+   KL + ++P +VT 
Sbjct: 479 ELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTA 538

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594
             L KVL++L+ E+V +RD+  ILE+LAE         +L  ++R  LGR I      G+
Sbjct: 539 PKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGR 598

Query: 595 DE---VHVIGLDTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAP 645
           D    +    +   ++ +L        A      LEP +   L    ++A+++ E     
Sbjct: 599 DRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMR 658

Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685
           PV+LV  A+R  LS +LR +   + VL   E+     ++ 
Sbjct: 659 PVILVRDAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698


>UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter
           RepID=B4UG32_ANASK
          Length = 692

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/676 (43%), Positives = 435/676 (64%), Gaps = 10/676 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA  I +L IL+++++PLP   LD+    +I LS+++LLVA+   R +EF+ FP++LL  
Sbjct: 17  LAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFPSLLLLV 76

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLALNVA+TR+IL +G  GA AAG ++E FG F VGG+  +G+VVF+IL+I+NF VI
Sbjct: 77  TLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLIVNFTVI 136

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR  + +E +F+G+MDGA
Sbjct: 137 TKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFFGAMDGA 196

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDA+AG+ I  +NIVGGLL G+L+  +S+  AAE+YTLLT+GDGLV+Q+PAL++S
Sbjct: 197 SKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQMPALLVS 256

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           TAAG++VTR +   D+G Q+ +Q+   P V+  +A VL  LGL+PGMP + F      LL
Sbjct: 257 TAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGGVAGALL 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
             A    GR++ A   P+P    +    ++       LE    + VGY L+P++D  + G
Sbjct: 316 LAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALE----LGVGYGLVPLIDLDKGG 371

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
           EL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P R +A++
Sbjct: 372 ELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPERLMALD 431

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
           P      + G   VDPAFGL A+WI  A + +A+  G T+V+A++V+ THL+ L+ ++A 
Sbjct: 432 PNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSELLRRNAH 491

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           E+ GRQE Q+LL  + ++ PKL ED+VPG ++L  L +V++ LL E V +RD+RT+LE +
Sbjct: 492 EIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLRTVLEAV 551

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-- 619
           A+ AP   +P  L    R  L R +T +       V  + LD   E  L   L    G  
Sbjct: 552 ADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLGASDGEA 611

Query: 620 -LEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
            L P +  A RL+A  +   +R    G P VLL    LR  L  F  R +P + VL+  E
Sbjct: 612 ALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQVLAARE 671

Query: 677 LSDNRHIRMTATIGGK 692
           L+    +    T+  +
Sbjct: 672 LAPGTTVEPAGTVQAQ 687


>UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F997_ACIC5
          Length = 700

 Score =  691 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/680 (42%), Positives = 421/680 (61%), Gaps = 13/680 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           LA P+  + ++ +M++P+PA +LDLL   ++A S++V L A+  ++ ++F+ FPT+LL  
Sbjct: 24  LALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLLLL 83

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+V+
Sbjct: 84  TLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFLVV 143

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           + GA R AEV ARF LD +PGKQMAIDAD+NAGLI E  A++RR  + QEA+FYG+MDGA
Sbjct: 144 SHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMDGA 203

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           ++F + D++A ILI  INIV GLL+G LQHG+++  A ++YT+LT+GDGLV  IP+L++S
Sbjct: 204 ARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLLVS 263

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            A G+++TR S+   +  ++  QLF   + + +++ VLG L LVPG+P L FL+    L 
Sbjct: 264 VAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVILA 323

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDG 381
           G+   +   +    A  +  K A+ +       + V   D L +E+G++LIP+VD  Q G
Sbjct: 324 GIGRTVTKEQPAEEAAEEAGKKADPSRA--DNLDSVLKVDDLSLEIGFQLIPLVDEAQGG 381

Query: 382 ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 441
            +L R+R++R+  A E+GFL P VHI DN+ L+P  Y + ++G+EIG       + LA++
Sbjct: 382 LMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLAVS 441

Query: 442 PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAA 501
                  + G+   +PAFG NA WI   L+EQA   GY+VV+ +T ++THL  LI  HA 
Sbjct: 442 NEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTHAH 501

Query: 502 ELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETL 561
           EL  R E ++LLD + +  PKL E+LVP V++L  + KVLQ LL E+V IRD+ TILETL
Sbjct: 502 ELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILETL 561

Query: 562 AEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLE 621
            E A        +   VR ALGR +TQ+       + V+ L+  LE  L+ A Q     +
Sbjct: 562 VEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQSEPPTD 621

Query: 622 -------PGLADRLLAQTQEALSRQ---EMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
                  P  A  L A+  E+L +        A PVLL     R  L R+L    P++ V
Sbjct: 622 ALLDRRTPASAQ-LFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPRITV 680

Query: 672 LSNLELSDNRHIRMTATIGG 691
           L+  E+     +     + G
Sbjct: 681 LAPPEIGPEIRVHSIGVLRG 700


>UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6J9_9SPHN
          Length = 700

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/685 (40%), Positives = 421/685 (61%), Gaps = 10/685 (1%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N++      LA P  IL I+ +MV+P+PA +LD+    NIALS+ VL+ AM  Q+ L+F+
Sbjct: 2   NVRHFLNPGLALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFS 61

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FP++LLF TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+I
Sbjct: 62  SFPSVLLFATLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLI 121

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L+IIN MV+TKGAGR++EV ARF LD +PGKQMAIDADL AGL+  DEAK RR E+  EA
Sbjct: 122 LMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEA 181

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYGSMDGASKFV+GDA+A +LI++IN++ GL++G+  HG++ G AAE+Y  L +GD LV
Sbjct: 182 DFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALV 241

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           A +PAL++S AA VIVTRVS  +D+  Q+  QL ++P + L  A +L ++G +P MP  +
Sbjct: 242 ASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSI 300

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
            L  ++G   L + +R   +     P+P    + + +      +V  +  + +++GY LI
Sbjct: 301 ILPLSSGTFYLWFRLRKNHEARKEMPEPEAKPDPSHIT---IEEVTDQTLVTVQLGYGLI 357

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
            + D ++   L+ R+  +RK+  Q  GF+ P   I D+ +L P  YRI + G  +G G  
Sbjct: 358 SLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKI 417

Query: 433 YPGRWLAINPGTAAGT--LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
            PG  LAI+ G   G+  +PG  TVDP+FG  A+WIE   ++ A  +GY  V+  +V+AT
Sbjct: 418 NPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIAT 477

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
            ++ L+   A +L G  + + L++ +     +L + + P  ++L  L ++L++LL + + 
Sbjct: 478 QVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGIS 537

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610
           +R    +  +++  A   ++   L  +VR  LG  I  +  P   ++ VI L   LE ++
Sbjct: 538 LRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMV 597

Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
              LQ        +EP LA  +  +    + +++     P L+V    R  LS  LR   
Sbjct: 598 TGGLQDPSSGEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRA 657

Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691
           PQ +VLS  EL   + I + A +G 
Sbjct: 658 PQCLVLSINELPVAQPIEVIAVVGD 682


>UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter
           RepID=C5EZ65_9HELI
          Length = 754

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/737 (39%), Positives = 426/737 (57%), Gaps = 60/737 (8%)

Query: 11  PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70
           P   + T  + L     I+ IL+++++PLP+ +LD     +IALS +++L+A++ ++  +
Sbjct: 16  PFLSQLTGSKDLTVVFFIIAILAIIIVPLPSALLDFFLAISIALSALIILIALYVKKPTD 75

Query: 71  FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130
           F+AFPT+LL  TL RL+LN+A+TR+IL  GH G  A   ++ AFG F+VGGN+ IGI++F
Sbjct: 76  FSAFPTLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILF 135

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           +ILVIINFMV+T G+ R++EV ARF LD MPGKQMAIDADLN GLIG++EAK RR E+  
Sbjct: 136 IILVIINFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAA 195

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           EADFYGSMDGA+KFV+GDAIAGI+I +INI+GG L+GV Q  MS+  AA ++T+LTIGDG
Sbjct: 196 EADFYGSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDG 255

Query: 251 LVAQIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           LV+Q+PAL++STA G+IVTR S + ++    +V+QL +    +++   +L L  LVPG+P
Sbjct: 256 LVSQLPALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLP 315

Query: 310 NLVFLLFTAGLLGL-----------------AWWIRGREQKAPA--EPKPVKMAENNTVV 350
            +         L L                 + + + R+ KA     P P +  +  +  
Sbjct: 316 TISLGFVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGG 375

Query: 351 EATWNDVQL--------------------------EDSLGMEVGYRLIPMVDFQQDGELL 384
           +   N  Q                              L + +GY+LI   D  Q GEL+
Sbjct: 376 QTPQNAQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELV 435

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
            +IR+IRK  A E G L P+VH+RD+++L P  Y+IL+K +EIG G     ++LAI    
Sbjct: 436 NKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSG 495

Query: 445 AAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
             G LP G  T +P FGL+A WI+   KE A I+GYT+++ +TV++TH+  LI Q+A EL
Sbjct: 496 FVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEEL 555

Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563
             RQE   L+ ++ Q+ P L E++    V + T+  +L+ LL E++PI+DM +I E +A+
Sbjct: 556 LTRQEVANLVAKLGQDYPILAEEI--KGVGIGTIQHILKELLHEQIPIKDMLSIAEAIAD 613

Query: 564 HAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL------QALQG 616
             P    D   L+  VR  L R IT  +      +    L   LE+ LL      Q +  
Sbjct: 614 GYPAYKADLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ 673

Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLL--VNHALRPLLSRFLRRSLP--QLVVL 672
              L P  +  LL     A  +   +GA P ++  V   LR  L+ FL +      +VVL
Sbjct: 674 RLRLSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVL 733

Query: 673 SNLELSDNRHIRMTATI 689
           S  E+       +  +I
Sbjct: 734 STAEIDYQSKFEILGSI 750


>UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria
           RepID=A3PKA8_RHOS1
          Length = 704

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/680 (45%), Positives = 429/680 (63%), Gaps = 12/680 (1%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           +  P+ IL +++MMVLPLP  +LDL F  NI LS+++L+VA+ T R L+F++FP+ILL  
Sbjct: 17  MTLPLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFPSILLVA 76

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           T+LRLALNVASTRI+L  GHTG  AAGKV+EAFG F++GGNF +G  VF ILVIIN +VI
Sbjct: 77  TVLRLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVIINLVVI 136

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGAGR++EV ARF LD MPGKQMAIDADLNAGL+  DEA++RR++V  EADFYG+MDGA
Sbjct: 137 TKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFYGAMDGA 196

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFV+GDA+AGILI++INIVGG+++G LQHG+ +  AAE+Y LL+IGDGLVAQIP+L++S
Sbjct: 197 SKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQIPSLLLS 256

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            A  +IVTRVS+  D+   +  Q+       +  AAV+ +LGL PGMPNL+FLL      
Sbjct: 257 IATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMPNLLFLLGGVAAA 315

Query: 322 GLAWWIRGRE-------QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374
            +AW    RE         A      V+          T  DV     + +++GY LIP+
Sbjct: 316 AMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAPISLQIGYGLIPL 375

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
                 G L+ RI +IR+  ++ +GF+ P V IRD++ L P +YRI +    +     YP
Sbjct: 376 A-GDNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQAILAEDTVYP 434

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
            R LA+  G +   L G A  DP+FGL A WI      +A+   + VVE  +V+ATHL+ 
Sbjct: 435 DRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEPESVIATHLSQ 494

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           ++ +HAA+L G+ + Q L+D + +  P L + +VP +V L  L  VL+ LL +++P+ DM
Sbjct: 495 ILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKALLADRIPVSDM 554

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
           R ILE L++ A     P E+   +R AL   + QQ  P    + +I L+  LE+LLL++ 
Sbjct: 555 RRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEPDLEQLLLRSR 614

Query: 615 QGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
           + G  +   + GLA  LL    E L      G    ++V   LR   + F+R  LP  VV
Sbjct: 615 RQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAFVRPHLPDAVV 674

Query: 672 LSNLELSDNRHIRMTATIGG 691
           +   EL + R + +  T+GG
Sbjct: 675 IGMGELPEARRVEVLGTVGG 694


>UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia
           RepID=FLHA_BORBU
          Length = 697

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/686 (35%), Positives = 409/686 (59%), Gaps = 15/686 (2%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           L       L   + ++ +++  +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ 
Sbjct: 13  LGLNNKSDLIISVGLIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSV 72

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPT+LL  T+  L LN++STR+IL +G       G+++  FG F+VG +   G+V+  I+
Sbjct: 73  FPTLLLVMTIFGLVLNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFII 129

Query: 134 VIINFMVI----TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
            II   V     TKGA R+AEV ARF LD +PGKQMAID+  ++G + E+EA ++++++ 
Sbjct: 130 FIIIIAVQFIVITKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQ 189

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            E +FYG+MDGASKFV G+   G LI +INI+GGLLVG+   G++   A  +Y  LT+GD
Sbjct: 190 SEVNFYGAMDGASKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGD 249

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           GLV+Q+P+L+IST+ G+IVTR  +    G ++ +Q  ++  +  + +  L  L  +PG P
Sbjct: 250 GLVSQLPSLLISTSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFP 309

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPK-PVKMAENNTVVEATWNDVQLEDSLGMEVG 368
            L+ +  +  +  LA+ + G  QK   + K  ++  + +   +   + V   D L +E+G
Sbjct: 310 TLILMFLSLSIAFLAYSLSGIRQKEEIDKKMKLEEEQASIYSDKDVSPVVPLDPLALEIG 369

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y L+P+VD  +  ELL RI  IR++ A E G + P + I DNM L+P  Y   ++GVE+G
Sbjct: 370 YNLVPIVDDTKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVG 429

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
            G+   G++L IN G  +G + G+   DP+FGL ++W+    +E A+  GYTVV+  +++
Sbjct: 430 RGEIKLGKFLVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSII 488

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATH+  LI +H+ E+  RQ+ Q  LD   ++   + E+++    ++  + +VLQ LL E+
Sbjct: 489 ATHMTELIKRHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQ 547

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           V IR++ TI ET+A+   I  D   L    R ++GR IT  +     E++VI L+   E+
Sbjct: 548 VSIRNLVTIFETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQ 607

Query: 609 LLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
           +++ +           ++P L  + + +  + ++  +  G  PV+L + + RP++     
Sbjct: 608 MIIDSRVESNHDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITS 667

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689
           R +P LVV+S LE+  N  + +  T+
Sbjct: 668 REIPDLVVMSVLEVPQNIKVNVLKTV 693


>UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C3B57
          Length = 720

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/665 (42%), Positives = 415/665 (62%), Gaps = 14/665 (2%)

Query: 33  SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92
            + ++PLP  +LD+L  FNI+ ++++LLV +  ++ LEF+ FP++LL  TL RLALNVA+
Sbjct: 41  VIFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQPLEFSTFPSLLLLLTLFRLALNVAT 100

Query: 93  TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152
           TR++L+ G      AG +VEAFG F+VGG+  +G+V+F+IL++I F+VITKGAGR++EV 
Sbjct: 101 TRLVLLNG-----DAGTIVEAFGKFVVGGSLIVGLVIFLILIVIQFVVITKGAGRVSEVA 155

Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212
           ARF LD +PGKQMAIDA++NAG+I E EAK+RR+ + +E++FYG+MDGAS+FVRGDA+A 
Sbjct: 156 ARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLMRESEFYGTMDGASRFVRGDAVAA 215

Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272
           I+I  IN+ GG ++G L  GM +  A   Y++LTIGDGLV QIPAL+ +TA+ ++VT+ +
Sbjct: 216 IIITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIGDGLVTQIPALITATASAMLVTKAT 274

Query: 273 TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQ 332
           +   +GE++  Q  +      L+A +L  L LVPGMP L FL     LL L+  +    +
Sbjct: 275 SGTSLGEELGGQFSAASGPFRLAAFILIALALVPGMPMLPFLALGVALLLLSRRMSRVPE 334

Query: 333 KAP------AEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGR 386
             P      A       A + + VE   +D    D + +E+G  LIPMV  ++   L+ R
Sbjct: 335 LPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRVSLEIGAALIPMVSARRGPGLIDR 394

Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446
           I  +R+  A++ G   P V +RDN+ L P  YRIL+ G E+  GD  P  WLAI+PG AA
Sbjct: 395 IGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLGGREVARGDVRPDLWLAIDPGGAA 454

Query: 447 G-TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFG 505
              L GE   +PAFGL A WI  A + +A+  G+TVV++  V+ THL  ++ +HA EL G
Sbjct: 455 RVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVVDSPNVIITHLGEVVRRHAGELLG 514

Query: 506 RQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHA 565
           R + + ++DRV +  P + +DL+P VV++  LH+VL  LLDE+VPI ++  ILE+LA HA
Sbjct: 515 RDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLTQLLDERVPISNLPRILESLAAHA 574

Query: 566 PIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-GLEPGL 624
           P   DP EL   VRV LGRA+  ++      +  I LD  LE  L +A+Q     ++P  
Sbjct: 575 PTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVLDPRLELDLKRAVQNNQLIIDPSR 634

Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
            ++L  +    L +    G    LL +  LR  L   L R+L  L V+S  E+  +  + 
Sbjct: 635 LEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRHSLARALHDLSVVSYQEIPTDLLME 694

Query: 685 MTATI 689
             A I
Sbjct: 695 PVAVI 699


>UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW37_ARCB4
          Length = 703

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 264/702 (37%), Positives = 416/702 (59%), Gaps = 29/702 (4%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           + K    + L    L L +L+++++PL    LD   + ++A+S ++LL++++ Q+  +  
Sbjct: 4   DFKKIFTRDLIAVALFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPADLT 63

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FPT++L   + RLAL++A+TR IL EGH G  A   ++ AFG F+VGGN  IGI++F+I
Sbjct: 64  TFPTLILILVVFRLALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIIIFII 123

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           LV+INFMV+TKGA R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR  +  EA
Sbjct: 124 LVLINFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEA 183

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           +FYG+MDG+SKFV+GDAIA I+I ++N+VGG+LVG+ QH +S+  A E+YT+LTIGDGLV
Sbjct: 184 NFYGAMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLV 243

Query: 253 AQIPALVISTAAGVIVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           +QIPAL++STA  +I+TR +TD +    Q VNQL  +   ++L    L L  LVPG P  
Sbjct: 244 SQIPALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPTF 303

Query: 312 VFLLFTAGLLGLAWWI------------------RGREQKAPAEPKPVKMAENNTVVEAT 353
           + +     + GL + I                    ++   P + K  +   +      T
Sbjct: 304 ILMTMGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQT 363

Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
              +   + L +++G RL+ +V  Q + ELL +I++IRK  A E+GF+ P + I D+  L
Sbjct: 364 IETIMKLEVLELKLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDDSYL 421

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
            P  Y++ +K + +  G     ++LA+  GT    L G    +P F L+A WI   L+E+
Sbjct: 422 SPNEYQLYLKRIPLVKGRIEVDKFLAM-GGTGNEKLQGIHVKEPVFNLDATWITGDLREE 480

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
           A ++G+TVV+A T+++TH++ +I +HA ++  RQ+   +++R+ ++ P + E+ +  V +
Sbjct: 481 ALMKGFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAM-KVTS 539

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPG 593
              L KV ++LL EK+PI DM TI+E +A+ A     P  L   VR  L R ITQ++   
Sbjct: 540 YGALLKVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDT 599

Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV- 647
              +H+I +   +E+  +  LQ   G     L     + L+ +T++ L   EM G   V 
Sbjct: 600 DGILHIITIKPDVEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFSKVC 659

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           ++V+  LR  +S    +   Q+ VLS+ EL    +  +  T+
Sbjct: 660 MVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701


>UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria
           RepID=A9L223_SHEB9
          Length = 685

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/682 (32%), Positives = 391/682 (57%), Gaps = 26/682 (3%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K+     +    ++++ + MM+LPLP  ++D+L   N+ LSI++L++A++ +  LEF+ F
Sbjct: 10  KAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVF 69

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RLAL ++++R+IL++       AG +V  FG+F+VGGN A+GI++F I+ 
Sbjct: 70  PSLLLITTLYRLALTISTSRLILLQ-----HDAGDIVYTFGNFVVGGNLAVGIIIFAIIT 124

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ F+VITKG+ R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK++R++V +E+  
Sbjct: 125 IVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQL 184

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV+GDAIA I++++ NI+GG+ VGV+QH MS   A  +Y +L++GDGL+AQ
Sbjct: 185 YGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQ 244

Query: 255 IPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           IP+L+IS  AG+IVTRV  +  Q++  ++V Q+   P+ + ++  V+ +  L+PG P LV
Sbjct: 245 IPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILV 304

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
           F    + +LG + W++ ++++A A+       E +   +A  +D    D++       ++
Sbjct: 305 FGTLGSVVLGASLWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGAVPLIL 358

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
            +        +   ++ +R ++ +++G   P + ++           +L+    +     
Sbjct: 359 YLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQL 418

Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
            P   L I+      T+P      P       WI+    EQA+ QG  V     + A  +
Sbjct: 419 VPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVM 475

Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             +I ++A E  G QE + L+D +     +L ++L   ++++  + ++LQ L++E + +R
Sbjct: 476 GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVR 534

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612
           D+RTI ETL E  P + D   LT  VR+AL R I +++   +  + V+ +   +E ++ +
Sbjct: 535 DLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRE 594

Query: 613 ALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
           +++         L+     ++L   QE L  ++      VLL +  +R  L + + R L 
Sbjct: 595 SIRQSTAGSYSALDMAQTQQILTCIQEQLPPEQT----CVLLTSLDVRRYLRKIVERELF 650

Query: 668 QLVVLSNLELSDNRHIRMTATI 689
              VLS  EL D+  I++   +
Sbjct: 651 STPVLSFQELGDDAEIKVIGQV 672


>UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria
           RepID=Q254G8_CHLFF
          Length = 709

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/692 (33%), Positives = 382/692 (55%), Gaps = 26/692 (3%)

Query: 17  TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76
            +   L   + ++ ++ M++LPLP  I+DL+ T N+A+S+ +L+VA++    L+ + FP+
Sbjct: 22  NKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFPS 81

Query: 77  ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136
           +LL TT+ RL +N++S+R IL++ +     AG V++AFG F+VGGN+ +G ++F+I+ II
Sbjct: 82  LLLITTMFRLGINISSSRQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITII 136

Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196
            F+V+TKGA R+AEV ARF LD MPGKQMAIDADL AG+I   +A+ +R  + +E++ YG
Sbjct: 137 QFIVVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYG 196

Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256
           +MDGA KF++GD IAGI+I +INIVGGL +GV  HGM +  AA  YTLL+IGDGLV+QIP
Sbjct: 197 AMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIP 256

Query: 257 ALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF- 313
           +L+IS  AG++ TRVS+D   ++G+++ +QL   P  +LL++A    +G   G P   F 
Sbjct: 257 SLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFS 316

Query: 314 -LLFTAGLLGLAWWIRG----REQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
            L F  GLLG+    +     ++  + A       A+         +D  L   + +E+G
Sbjct: 317 ILSFIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELG 376

Query: 369 YRLIPMVDF---QQDGELLGRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMKG 424
             L  ++          +   I  +R+   Q++G   P +H+R D+  L+   Y IL+  
Sbjct: 377 KDLSALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNE 436

Query: 425 VEIGSGDAYPGRWLA--INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           V    G   P   L   +        LP   T   A GL + W+    K   +       
Sbjct: 437 VPYVRGKIPPHHVLTNEVEENLKRYNLPFI-TYKNAAGLPSAWVSEDAKTILEKAAIKYW 495

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
               V+  HL++   + + E  G QE + +++ + +  P L +++   ++ L  L ++ +
Sbjct: 496 TPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVT-RLIPLQKLTEIFK 554

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            L+ E++ I+D+RTILE+L+E A  + D   LT  VR +L   I+ ++  G+  + V  L
Sbjct: 555 RLVQEQISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLL 614

Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
           D  +E ++  A++         L+P   + +L   +  ++     G PPVLL    +R  
Sbjct: 615 DPEIEEMIRGAIKQTSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRY 674

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           + + +    P + V+S  E+     I+    I
Sbjct: 675 VRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706


>UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira
           RepID=C0QXX5_BRAHW
          Length = 703

 Score =  658 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/698 (34%), Positives = 395/698 (56%), Gaps = 22/698 (3%)

Query: 8   LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67
           ++LPANL  ++   +   I  ++++ M+++PLP+ ILD L   NI +S+++LL+ +  + 
Sbjct: 11  IKLPANL--SRHSDIMFAIGAVMVIMMLIIPLPSLILDFLLIINIIVSLLILLMVLSIRS 68

Query: 68  TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127
             +F+ FP++LL  T  RLALNV++TR IL EG   A   GKV+ +F  F+VGGN  +G+
Sbjct: 69  ANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGGNIVVGV 125

Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187
           V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA+++R +
Sbjct: 126 VIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRKK 185

Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247
           +  E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+   G     A  +YT  T+
Sbjct: 186 IRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFTV 245

Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GDGLV+QIP+  +S A G++VTR S++ ++  Q+  Q+F+ P  + + A     L L+PG
Sbjct: 246 GDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLPG 305

Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL--EDSLGM 365
            P +   +    L    + ++  +Q+        K      V +   +       + + +
Sbjct: 306 FPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLKVEKIEL 365

Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425
            VG  LIP+    + G+L+ RI  IR++ A E+G + P V I DN  ++P  Y + + G 
Sbjct: 366 SVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSINGT 425

Query: 426 EIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
           E+  G   P   LA+N  +  G  P  E   +PAFGL A WI+   K+ A+ +G+ + + 
Sbjct: 426 EMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQP 485

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP----GVVTLTTLHKV 540
           ++V+ATH +  I ++A  L GR+E Q +LD +  +   L  +++         L  + KV
Sbjct: 486 TSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQKV 545

Query: 541 LQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVI 600
           LQNLL E+VPIR+   ILE +A+   I     + T +VR  L   I+Q        + VI
Sbjct: 546 LQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQDRNIRVI 604

Query: 601 GLDTPLERLLLQALQGGGGLE--------PGLADRLLAQTQEALSRQEMLGA-PPVLLVN 651
            L   L+  + Q L   G L+              L+   ++A+      G    V L +
Sbjct: 605 TLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDDIVFLTS 664

Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +R  L +F+ +++ +  V++  E++   +++  A+I
Sbjct: 665 PIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702


>UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema
           RepID=FLHA_TREPA
          Length = 707

 Score =  656 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/670 (36%), Positives = 375/670 (55%), Gaps = 23/670 (3%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  ILD L  FN+  ++++LL+ +F ++  +F+ FP++LL +T+  L LNV+STR+IL
Sbjct: 29  PLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLIL 88

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
             G      +G ++ AF  F+VGG+      IG  VF+IL+ +   VITKGA RIAEV A
Sbjct: 89  TLGDR---FSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIAVQAFVITKGATRIAEVAA 145

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD    K M+IDA+ NAG+I E+EA++R+ ++ +EADF+G+MDGASKFV G+   GI
Sbjct: 146 RFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGI 205

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
            I ++N++ GL+VGV+        A ++YT LTIGDGL+AQ+P+L++S A G IVTR S 
Sbjct: 206 FITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQLPSLLLSVATGFIVTRSSD 265

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333
               G+ +  Q   +  V  + +  L ++ ++PG P+ +          +   +R RE+ 
Sbjct: 266 QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRKRERV 325

Query: 334 APAEPKPVKMAENNTVVEATWNDVQLE-----DSLGMEVGYRLIPMVDFQQDGELLGRIR 388
              E +  K ++   + +   +  ++      D L +E+GY LIP+VD ++  ELL RI 
Sbjct: 326 HVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLSLELGYGLIPLVDKEKGAELLSRIT 385

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
            IRK  A ++G + P + I DNM L P+ Y   ++G+E+  G    G +LAI  G     
Sbjct: 386 VIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAIKSGQVTEE 445

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           +PGE T+DP FGL A+WI    +++A+  GYTVV  S ++ATHL  +I  +AA++ GRQ 
Sbjct: 446 VPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILGRQN 505

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
            Q ++D + +E P + +D+      L  + KVLQ LL E+V IR+   I ETLA+ A   
Sbjct: 506 VQMIIDALRKEYPAVVDDVTQK-CPLGKIQKVLQGLLREQVSIRNTVAIFETLADFAS-T 563

Query: 569 SDPH---ELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG------ 619
           SD      L   VR  LGR I  Q+   ++ +HV+ LD+ LE  L + +           
Sbjct: 564 SDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLETFLSEKIALTVDSLSILT 623

Query: 620 LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSD 679
           L      ++L   +         G  PVLL    +R  +         ++ V+S  E+S 
Sbjct: 624 LSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDTIRSAMWNLFFSDRIEIAVMSYKEVST 683

Query: 680 NRHIRMTATI 689
           +  I     +
Sbjct: 684 DMRIETVGVV 693


>UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX
          Length = 675

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/689 (31%), Positives = 369/689 (53%), Gaps = 34/689 (4%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
             K+  +  L   +   + + MM++PLP  ++D++   NI+ ++++L+++++ +  LE  
Sbjct: 8   FKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPLELT 67

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FPTILL TTL+RL+L+V++TR+IL+        AG ++ +FG+F+VGGN  +G+V+F I
Sbjct: 68  SFPTILLITTLMRLSLSVSTTRLILLH-----HDAGDIIYSFGNFVVGGNIVVGLVIFTI 122

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           + I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK  RS V +E+
Sbjct: 123 ITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQKES 182

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
            FYGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q  M    A   +++L++GD LV
Sbjct: 183 QFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGDALV 242

Query: 253 AQIPALVISTAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           AQIPAL+IS  AGV+VTRV      ++++   +V Q+  N    L+SAA++ ++ ++PG 
Sbjct: 243 AQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAIIPGF 302

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
           P LVFL     LLG+AW ++ +           +        +A   D+    ++     
Sbjct: 303 PALVFLFLAVCLLGIAWKLQKK-----------RTFGTGNNKDAMGADLSNSQNISPGAE 351

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
             ++ +       ++  +I  +R  F +E G   P + +    +   A   +L +  E  
Sbjct: 352 PLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSAIEFLLYQ--ESI 409

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
             D      +    G A  +         +            ++ A + G  V   +   
Sbjct: 410 YKDTLIDDTVYFEAGHAEISFEFVQEK-LSTNSIVYKTNKTNQQLAHLTGMDVYATTNDK 468

Query: 489 ATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
            T  L  L+  +A E  G QE + L+D + ++  +L ++L    + L+ +  +LQ L++E
Sbjct: 469 ITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRLVEE 527

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
            V IRD+RTI ETL   +  + D   L   VR+AL R I  ++      ++V  + + +E
Sbjct: 528 NVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGSDIE 587

Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
             L ++++         + P   ++++   +  ++         V+L    +R  + + +
Sbjct: 588 NELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNG----VILTALDIRRYVKKMI 643

Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGG 691
             S P + VLS  E+ +N  +++  T+  
Sbjct: 644 EGSFPSVPVLSFQEVGNNIELKVLGTVND 672


>UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217
           RepID=Q12T85_SHEDO
          Length = 680

 Score =  651 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/673 (34%), Positives = 381/673 (56%), Gaps = 17/673 (2%)

Query: 21  ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80
            +   + ++ IL ++ +P+PA +LD+L   NI+ ++++LL+  +++R L+F+  P++LL 
Sbjct: 13  DVFFAVGVIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVLLL 72

Query: 81  TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140
            TL RL LN+ASTR+IL +G+     AGKV+ A G ++V GN+ IG+V+F ILV++ F+V
Sbjct: 73  ATLFRLGLNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQFLV 127

Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200
           +T GA R+AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+MDG
Sbjct: 128 VTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAMDG 187

Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260
           A+KFV+GDAIA I+I++INI+GGL +GV Q G+    A   YTL T+GDG+V QIP+L+I
Sbjct: 188 ATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSLII 247

Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
           +   G+I+TR +T  ++ +Q+  Q+ ++P  + L A V+     +PG+P+L  +L     
Sbjct: 248 AVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGITF 307

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
               ++   ++Q    E    +        E T      E  L +    ++ P +   ++
Sbjct: 308 ALFGYFAHKKKQLKLIEKTFRE-------FENTKKTSTQESLLQVAFSSQIWPQI-LAEE 359

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
            E+  +    + +F  + G   P + ++    L+   Y I +  +E  SG  +P + + I
Sbjct: 360 TEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMMVI 419

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
           +P        G A V+PA+GLNA+W+++   +  +  G TVVE  +V+ TH+   +  H+
Sbjct: 420 DPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKSHS 479

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
           AE   RQ   QL+    +    L  +++P  + +  + ++  +L+ EKV + +   I E 
Sbjct: 480 AEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIFEV 539

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA----LQG 616
           LA+ A  + D   LT  VR  L   +T         +++I +   LER LL      +  
Sbjct: 540 LADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVITK 599

Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
           G  + P   D L+ Q    + +   LGA PVLLVN  +R  L + L R++P L V+S  E
Sbjct: 600 GLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISVNE 659

Query: 677 LSDNRHIRMTATI 689
           +  +  +     I
Sbjct: 660 VPHHIKLNSLGVI 672


>UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC
          Length = 699

 Score =  650 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/692 (43%), Positives = 461/692 (66%), Gaps = 4/692 (0%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           + N++ +      +       L  P LIL IL +++LPLP F+LDL FTFNI  SI++L+
Sbjct: 7   IKNISLLFNYFKKIIYKNLNSLFFPFLILSILCLLILPLPTFVLDLFFTFNIIFSIIILI 66

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           V++F  + L+F++FPTILLF+TL RL+LN++STRIIL+ GHTG+ +AG V+E+FG FL+ 
Sbjct: 67  VSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLNGHTGSCSAGHVIESFGFFLIR 126

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD MPGKQMAIDADLN+GLI E +
Sbjct: 127 GNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQ 186

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N++GGLL+G++Q+ MS+  A +
Sbjct: 187 AKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIK 246

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVL 299
            Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++GE+++ Q+F+N  V+  S+ + 
Sbjct: 247 IYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIF 306

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359
              GL+PGMPN +FL F+     L+W+I  R +        +   +    ++ +WND++ 
Sbjct: 307 CFFGLIPGMPNFIFLFFSVLFFILSWYINYR-KNINKNFSKILKFKKRKKIDISWNDIEF 365

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
           ED L +E+      +   ++   L+ +++ +RK  AQ+ GFL P ++I  N  L   +Y+
Sbjct: 366 EDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYK 425

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
           I +KGVE+ SG  +  + L IN       + G    D  F     WI   +K+    +  
Sbjct: 426 IFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKI 485

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
             ++++ ++  + N +I  +   LFG QE QQLLDR++Q  PKL + L+P ++++ T   
Sbjct: 486 VFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQN 545

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPI-QSDPHELTAVVRVALGRAITQQWFPGKDEVH 598
           +LQNLL + + I+D+RTI+ETL +++   +++  ELT ++R+AL   ITQ++F     ++
Sbjct: 546 ILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYIN 605

Query: 599 VIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
           VIGL T  E +LL+ +      +EP  +++L+ +T+ A+  Q+    P VLLVN  +R L
Sbjct: 606 VIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVL 665

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           LS F       L VLS  E+S+NR I++T  I
Sbjct: 666 LSNFFLNCNIILPVLSFSEISENRVIKITQFI 697


>UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales
           RepID=A8LMR6_DINSH
          Length = 698

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/685 (34%), Positives = 375/685 (54%), Gaps = 16/685 (2%)

Query: 21  ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLF 80
            +   I++L I+ MM+LP+P+ +LD+    + +LSI++  V +F  R L+F+AFPT+LL 
Sbjct: 16  TVFFVIMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFSAFPTVLLA 75

Query: 81  TTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMV 140
           + +LRL+LNV+ST++I+ +GH G  AAG V+E F +F++GG+  +G+VVF++L+I+NF+V
Sbjct: 76  SLMLRLSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLVLLIVNFIV 135

Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200
           ITKGA R+AEVGARF LDGMPGKQ+AIDAD++AG I   EAK+RR     E  F+GS+DG
Sbjct: 136 ITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFGSLDG 195

Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260
           ASKFV+GDA+AG+LI  +N++ GL++G+  H M +G A  +Y++LT+GDGLV QIPA++I
Sbjct: 196 ASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIPAVII 255

Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
           S AA +++ +  +D+     +  Q   +P+ +     ++ L  L+PG+P + F L    L
Sbjct: 256 SIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLGAMVL 315

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
            G A ++  +   +P        A+ +   EAT  D+   D + +     L+  +     
Sbjct: 316 GGAALYLYRKTPDSPEGEDK-PAAQTDRPREATMGDILDVDEIHVTFSTDLVSSILDAAG 374

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
           G L  RI+S+R   A E G + P + + D+  L  A Y I + GVE   G  YP R L +
Sbjct: 375 G-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQLYPDRILLL 433

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
            P             +P +G  A WIE + +++  + G T V ++ V+ATHL  ++  + 
Sbjct: 434 LPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHLLEVVKGNL 493

Query: 501 AELFGRQEAQQLLDRVA--------QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
           A L   +  ++L+  +         +    L E+L+P  VT  TL  +L+ LL+E+V IR
Sbjct: 494 ARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLLLEERVSIR 553

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612
           ++  ILE +AE   I S    +   VR  L   I          + +I L    E++   
Sbjct: 554 NLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQEWEQIFAA 613

Query: 613 AL------QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
                        L P L  +L+    E + +    G  P ++ +   R  LS  L    
Sbjct: 614 NSIGREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFLSTVLASKG 673

Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691
            Q+ VLS  EL       +   +  
Sbjct: 674 LQVPVLSFEELGKTNRPSLVGVVSA 698


>UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria
           RepID=HRPI_ERWAM
          Length = 715

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/690 (33%), Positives = 377/690 (54%), Gaps = 33/690 (4%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           Q   + G  +++ I+ MM++PLP  ++D+L   NI +S +++++AM+  + L F+ FP++
Sbjct: 17  QRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSV 76

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL TT+ RLAL++++TR IL++       AG +VEAFG+F+VGGN A+G+V+F+IL ++N
Sbjct: 77  LLLTTMFRLALSISTTRQILLQ-----QDAGHIVEAFGNFVVGGNLAVGLVIFLILTVVN 131

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI   +A++RR  + +E+  +G+
Sbjct: 132 FLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLAKESQLFGA 191

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA KFV+GDAIAG++I+ IN++GG  +GVLQ+GM  G A   Y++LTIGDGL+AQIPA
Sbjct: 192 MDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGDGLIAQIPA 251

Query: 258 LVISTAAGVIVTRVSTDQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           L+IS  AG+I+TRVS D      ++G ++  QL S P   ++SAA +    L+PGMP  V
Sbjct: 252 LLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGMPTAV 311

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT-WNDVQLEDSLGMEVGYRL 371
           F++ +A  LG   +   R ++  ++ +  ++       E   + D++  +     +    
Sbjct: 312 FVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRFNPTRAYLLQFS 371

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
              ++ +    L+  IR +R +     GF  P   I  +  L    +R  +  + + +  
Sbjct: 372 QEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRFCVYEIPLVTAT 431

Query: 432 AYPGRW--------LAINPGTAAGTL-PGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
               +         + +  G + G + PG+A  D     +  W+        Q +     
Sbjct: 432 FAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCWLPPQH-PLLQQEDRRCW 487

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
            A  ++   +   I Q  A+  G QE++ +L+ +  E P+L ++L   ++ L+    VLQ
Sbjct: 488 NAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQEL-QRIMPLSRFAAVLQ 546

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            L  E++P+R +RTI ETL EH   + D   LT  VR+AL   I  Q+      ++V  L
Sbjct: 547 RLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNG-LNVWLL 605

Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
               E LL  +L+         L       LL Q + A    +      ++LV   LR  
Sbjct: 606 TPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYD--NHHALILVAQDLRSP 663

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
           L   L+     + VLS  EL+ N  I +  
Sbjct: 664 LRALLKDEFHAVPVLSFAELTSNVAINVLG 693


>UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales
           RepID=Y4YR_RHISN
          Length = 697

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/665 (32%), Positives = 365/665 (54%), Gaps = 26/665 (3%)

Query: 33  SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92
           SMMV+P+P   +D L  FN+ L++++L+ A++    L+F++ P ++L +T+ RLAL VA+
Sbjct: 29  SMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVFRLALTVAT 88

Query: 93  TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152
           TR+IL EG      AG ++  FG F++ GN  +G V+F+++ ++ FMV+ KGA R+AEV 
Sbjct: 89  TRLILAEGE-----AGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVA 143

Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212
           ARF LD +PGKQMAIDA+L  G I  DE+++RR+ + +E+  YG+MDGA KFV+GD+IAG
Sbjct: 144 ARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAG 203

Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV- 271
           ++++ IN++GG+ +G+L  GMS       YTLLTIGD L++QIPAL++S  A  +VTRV 
Sbjct: 204 LVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGDALISQIPALLLSITAATMVTRVT 263

Query: 272 -STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGR 330
            ++  ++GE + NQL ++   + L+A VL  +G VPG P  VF +  A     ++     
Sbjct: 264 GASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVKGDV 323

Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390
                 +   V  AE+ T      N     + +G+ +   L   +D     EL   I  I
Sbjct: 324 LDADKVDATTVTPAESQTP-----NVAAQPNPIGVFLAPSLTNAID---QVELRQHIARI 375

Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450
            +  + ++G + P + +  +  L  +++RI ++GV +      P + L++          
Sbjct: 376 SQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPAQ-LSLADDLKKIESS 434

Query: 451 GEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509
           G     DP    + IW+E + +   +  G      S ++A  ++  ++ HA  L G QE 
Sbjct: 435 GIPFRHDPE--THRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLTCHAPRLVGIQET 492

Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569
           +QLL R+ QE   L ++++     +  +  VL+ LL E +PIR+ R +LE LAE +  + 
Sbjct: 493 RQLLGRMEQEYSDLVKEVLRTT-PIPRIADVLRRLLGEGIPIRNTRLVLEALAEWSEREQ 551

Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGL 624
           +   LT  VR  + R I  ++      +    ++   E ++  A++         LE   
Sbjct: 552 NVALLTEHVRSGMKRQICHRY-GRHGVLPAFVMERETEDVVRCAVRETAAGPYLALEDRQ 610

Query: 625 ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
           ++ LL+Q ++  S        P++L +  +R  +  FL R+  +L VLS  +L+ +  I+
Sbjct: 611 SEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSYQDLASDFKIQ 670

Query: 685 MTATI 689
              +I
Sbjct: 671 PVGSI 675


>UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus
           RepID=B4EYD9_PROMH
          Length = 699

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/695 (31%), Positives = 374/695 (53%), Gaps = 37/695 (5%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L    +++L++ M+++PLP +++D L   NI ++I++ + + + +R L F  FP +LL T
Sbjct: 15  LIVLSVMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMTFPALLLIT 74

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLAL+++++R+IL++     A AG+++ +FG F++G N  +G VVF I+ I+ F+VI
Sbjct: 75  TLFRLALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIVTIVQFLVI 129

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+ R+AEV ARF LDGMPGKQM+IDADL +G+I  +E + RR E+ QE+  YGS DGA
Sbjct: 130 TKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQLYGSFDGA 189

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
            KF++GDAIAGI+I+ +N++GG+ VG+ Q G+S+  A  +YTLLTIGDGLVAQIPAL+IS
Sbjct: 190 MKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVAQIPALLIS 249

Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
            +AG IVTRV  +  ++G  ++N+L +    +L++A +   +G +PG P  VFL+ +  L
Sbjct: 250 ISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPVFLILSVML 309

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL----GMEVGYRLIPMVD 376
               ++ + + + +  E K     +N+    A      + +      G EV   L+    
Sbjct: 310 G--VYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVDNSLLTENI 367

Query: 377 FQQDGELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
                E L  I                 + ++K+F  + G L P + I  +  +   +  
Sbjct: 368 TLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSDKIDDDKII 427

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
           IL+  V+    +     +   NP     +L               WIE   + +    GY
Sbjct: 428 ILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERDDESKLAPLGY 487

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
               + +      + LI+ +  E  G QE + +LD++ +  P+L ++     V++  ++ 
Sbjct: 488 KAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECY-RQVSIQRIND 546

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VLQ L+ EK+PIR+++TI+  L +    + DP  LT  +R  L R I+  +F    + + 
Sbjct: 547 VLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISY-FFSTDGKFNA 605

Query: 600 IGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           I L   +E ++   ++         LEP   D ++ +    +   + +    + L +  +
Sbjct: 606 IILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYI-QDYIFLTSIDI 664

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           R  + + +    PQ+ VLS  E++ +  I +  +I
Sbjct: 665 RRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699


>UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL
          Length = 686

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/680 (32%), Positives = 380/680 (55%), Gaps = 20/680 (2%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L   +L+++I++M+++PLP +++D L   NI L+I+V + + + +R L F+ FP++LL T
Sbjct: 15  LIILVLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTFPSVLLIT 74

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLAL+++++R+IL++     A AGK++  FG F++G + A+G V+F I+ ++ F+VI
Sbjct: 75  TLFRLALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVTVVQFIVI 129

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+ R+AEV ARF LDGMPGKQM+IDADL AG+I    AK+RRS + +E+  YGS DGA
Sbjct: 130 TKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQLYGSFDGA 189

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
            KF++GDAIAGI+I+ +N++GG+ VG+ QHGMS+  A  +YT+LTIGDGLV+QIPAL+IS
Sbjct: 190 MKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQIPALLIS 249

Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
            +AG IVTRV+ D  ++G  +++Q+F NP V+++++A+   +G++PG P  VF L    L
Sbjct: 250 ISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFFLIAVTL 309

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV----- 375
             L ++ +  E++                ++ + +           +    +P++     
Sbjct: 310 TALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVPLILLFAE 369

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           +     ++ G I  IR +F  + G   P +  R + +L+     +L+  V   S + Y  
Sbjct: 370 NKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFD 429

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTVVATHLNH 494
           +    +       L G   V  ++    I W++ +  E        +  A       L+ 
Sbjct: 430 KVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQ 488

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
            +  +  E+FG QE + +LD+     P L +++    VT+  + +VLQ LL E + +R++
Sbjct: 489 ALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGENISVRNL 547

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
           + I+E+LA  AP + D   L   VR +L R I  +      E+ V+ L   +E  + + +
Sbjct: 548 KLIMESLALWAPREKDVITLVEHVRASLSRYICSKIAV-SGEIKVVMLSGYIEDAIRKGI 606

Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
           +   G     ++  ++D ++     AL          VLLV+  +R  + R +      +
Sbjct: 607 RQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSI 666

Query: 670 VVLSNLELSDNRHIRMTATI 689
           +V+S  E+ +   I +  TI
Sbjct: 667 LVISYAEIDEAYTINVLKTI 686


>UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL
          Length = 707

 Score =  634 bits (1636), Expect = e-180,   Method: Composition-based stats.
 Identities = 214/654 (32%), Positives = 357/654 (54%), Gaps = 18/654 (2%)

Query: 45  DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGA 104
           D+L  FN+  +I++L+VA++    L+F++ P ++L +T+ RLAL +A+TR+IL EG    
Sbjct: 41  DMLIGFNLGFAILLLMVALYLSTPLDFSSLPGVILISTVFRLALTIATTRLILAEGD--- 97

Query: 105 AAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQ 164
             AG ++  FG F++ GN A+GIV+F+I+ ++ FMV+ KGA R+AEV ARF LD +PGKQ
Sbjct: 98  --AGSIIHTFGDFVISGNIAVGIVIFLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQ 155

Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224
           MAIDA+L    I + EA++RR+ + QE+  +G+MDGA KFV+GDAIAG++++ IN++GG+
Sbjct: 156 MAIDAELRNNHIDQHEARRRRAALEQESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGI 215

Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS--TDQDVGEQMV 282
            +G+L   MS+  A   YTLLTIGD L++QIPAL++S  A  IVTRV+  +   +G  +V
Sbjct: 216 SIGLLSKDMSLDAAMHHYTLLTIGDALISQIPALLLSITAATIVTRVNGPSKLKLGADIV 275

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK 342
           +QL ++   + L+A VL L+G VPG P   F++        ++   G +   PA      
Sbjct: 276 SQLTASTQALRLAACVLLLMGFVPGFPLPPFVILAVLFAAASYVKVGAKGDEPAAKTGAN 335

Query: 343 MAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFL 401
           +  +           Q   +  + +   L P +    D  EL   I  +    + ++G  
Sbjct: 336 VTASAPAPAQAQAQKQAAHAEALPIALFLAPNLTHSIDKDELEQSIARVSTSVSADLGIT 395

Query: 402 PPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV-DPAFG 460
            P +  R + +L  +++RI +  V +      P + L +N   A   L G     DP   
Sbjct: 396 VPRIPARIDQNLSKSQFRIDVDSVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPE-- 452

Query: 461 LNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEM 520
              +WIE       +  G        ++A  L+  ++++A  L G QE +QLL R+ QE 
Sbjct: 453 TARVWIEERHAAALKAAGIGHHRPVEILALRLHSTLTRYAQRLVGIQETRQLLARMEQEY 512

Query: 521 PKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRV 580
             L ++++    T+  + +VL+ LLDE +PIR+ R +LE LAE +  + +   LT  VR 
Sbjct: 513 ADLVKEVLRTA-TIPRIAEVLRRLLDEGIPIRNTRLLLEALAEWSEREQNAVLLTEYVRA 571

Query: 581 ALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEA 635
           AL R I  ++      V    ++   E ++  +++         L+   +++LL+Q ++ 
Sbjct: 572 ALKRQICFRYANAHRVVAAFIIERETEEIVRVSVRETAVGPYLVLDDWQSEKLLSQFRQI 631

Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            S      + PV+L +  +R  +  FL R+   L VLS  +L+    ++   ++
Sbjct: 632 HSTIAQSQSQPVILGSMDIRRFVRGFLTRNGLDLPVLSYQDLASEFTVQPIGSV 685


>UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp.
           NGR234 RepID=C3KN99_RHISN
          Length = 714

 Score =  633 bits (1634), Expect = e-180,   Method: Composition-based stats.
 Identities = 229/696 (32%), Positives = 372/696 (53%), Gaps = 29/696 (4%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
            +++   +    +++L ++MM++P+P F++D+L  FN   S+++L+ A++     +F++ 
Sbjct: 13  AASRRSDIVVAAVVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGALYISSPAQFSSL 72

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P+I+L  TL RLAL + +TR+IL E     A AG++V AFG F+VGG+  +G++VF+I+ 
Sbjct: 73  PSIILLGTLFRLALAITTTRLILTE-----ADAGQIVAAFGSFVVGGDVLVGLIVFLIIT 127

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I  F+VITKGA R+AEVGARF LD MPGKQM+ID +  +G I + EA+++R ++ +E+ F
Sbjct: 128 IAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLERESQF 187

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV+GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y+LLT+GDGL++Q
Sbjct: 188 YGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGDGLISQ 247

Query: 255 IPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           IPAL+++ AAG +VTRV +    QD+  +++ QL ++   + L+AA+L   GLVPG P +
Sbjct: 248 IPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVPGFPLI 307

Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV-------------EATWNDVQ 358
           VF         LA+  R R+             E   V                  +D+ 
Sbjct: 308 VFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHIAGNLPGAGSDLG 367

Query: 359 LEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418
           +   L + +G  L   +          R  S+ +   +++G   P +    +  L  A +
Sbjct: 368 MAHRLTLTMGEGLGERLPP---PLFAERTESLAEAILEDLGIRVPAIGRLTDARLATAEF 424

Query: 419 RILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP-AFGLNAIWIESALKEQAQIQ 477
           RI  +GV +  G   P   +A +       L       P   GL  +WI+ +        
Sbjct: 425 RIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAAALDAA 484

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
           G    EA+ VV T +  ++ ++A +    QE + LL R+      LT++++  VV+   L
Sbjct: 485 GVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVL-DVVSAQRL 543

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597
             VL+ L++E VPI +MR IL+T+AE      +   L   VR  LGR I  +       V
Sbjct: 544 SDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADSNRIV 603

Query: 598 HVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEML---GAPPVLLVNHAL 654
               L  P E  L  A++   G    + +RL A   E L ++       +   +L +  L
Sbjct: 604 SAYLLTRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGAQSRAAILTSMDL 663

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R  +   L R   Q+ VLS  E++    ++    I 
Sbjct: 664 RRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYIA 699


>UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group
           RepID=A0RCA3_BACAH
          Length = 693

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 216/692 (31%), Positives = 364/692 (52%), Gaps = 22/692 (3%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
            K    +      L    +  +++PLP FILD++  F +++S+++ + A       E  +
Sbjct: 7   FKIDSARTYFSIFLAASFVVALLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDELKS 66

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPT+LL   + R+++NV++TR IL  G+     AG V+E FG F++GGN  IGIV+F +L
Sbjct: 67  FPTMLLLIGIFRVSINVSTTRAILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFTVL 121

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           +I  F+V   GA R AEV ARF LD +PGKQM+IDADLN  +I E +A+ +R ++  E +
Sbjct: 122 IIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNMETE 180

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           FYG+MDGA KF++GD I GI+I+ +NI+ GL+VG++Q GMS G AA  YT LT+GDG+V 
Sbjct: 181 FYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGIVN 240

Query: 254 QIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           QI +L+++ + G+IVTRV   +   V E +  +L ++  V+     +   +G+   +P L
Sbjct: 241 QIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLPFL 300

Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVK------MAENNTVVEATWNDVQLEDSLGM 365
            F L    ++ L    + R +K   +    +        E    VE ++     +  + +
Sbjct: 301 PFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKYPIIV 360

Query: 366 EVGYRLIPMVDFQQDGELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMK 423
           E+G  L  +V  + +GE    ++  +RK    ++G   P ++ +DN   +P  RY I +K
Sbjct: 361 ELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIRIK 420

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           G +   G    G  LA+        L  E   DP FG +  WI   + + AQ++GY V+E
Sbjct: 421 GAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQVLE 480

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
             +++ THL+ ++ ++  EL  RQ  + L++ +  +   L E++    + L+ +  V++ 
Sbjct: 481 PLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVIKQ 540

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDP-HELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
           LL E + IRD+ TI+E + +   I  +    +T+ VR  + + I +       +++    
Sbjct: 541 LLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAALF 600

Query: 603 DTPLE---RLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH-ALRPL 657
              +E    ++  + QG     +  L  R++ Q Q    +  ++G  PVLL      R  
Sbjct: 601 SDSIELDADVVNNSYQGYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFRFA 660

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           + R L R   +  VL   EL+    +   A I
Sbjct: 661 IVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692


>UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans
           PD1222 RepID=A1B5C1_PARDP
          Length = 694

 Score =  626 bits (1615), Expect = e-178,   Method: Composition-based stats.
 Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 17/682 (2%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L    ++LLI+  MV+P+ A +LDL    +IA + ++L++A   ++  +F AFP +LL +
Sbjct: 16  LIITGVLLLIVLSMVIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVS 75

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
            L+RL+LN++STR+IL  G  GA AAG V+EAF  F+ GG+  +G+ VF ++ ++NFMVI
Sbjct: 76  LLIRLSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVI 135

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+GR+AEV ARF LD +PGKQ+AID DLN+G I  DEAK+RR+   +E  F+GS+DGA
Sbjct: 136 TKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGA 195

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFV+GDAIAG++I +IN+  GL  GV+ HGM +  A  +Y+ LTIGDGLV+QIPAL+ S
Sbjct: 196 SKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITS 255

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            AA ++++R    +   + +  Q  SN  V  + A  +  +GLVPGMP LVF    A L 
Sbjct: 256 MAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLG 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-PMVDFQQD 380
             AW+IR R+ K   E      +      +    DV   D + +E+G  LI   +D  + 
Sbjct: 316 VAAWFIRARQDKTRPEDAAPVESHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRG 375

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
             L  RI ++R   A+  G + P V I D    Q   Y + ++GV  G G   P   LA+
Sbjct: 376 --LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLAL 433

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
                   L GE   +P +G  A WI    +++A I G TVV    V++THL  ++  + 
Sbjct: 434 GAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTNL 493

Query: 501 AELFGRQEAQQLL--------DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             L      Q+++        +  AQ   +  + +VP  V    L  VL+ LL+E++ +R
Sbjct: 494 PALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISVR 553

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL-- 610
           ++  I + + E A   + P  +   VR  L   IT+Q+      + ++ L    E  +  
Sbjct: 554 NLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIAR 612

Query: 611 --LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
              ++ + G G  P +  RL    Q  LS     G   VL V    R L+   L  +   
Sbjct: 613 SEAESARAGNGAIPQIQKRLADALQATLSGLPP-GIEVVLAVPDHRRRLVRMMLSSAGIA 671

Query: 669 LVVLSNLELSDNRHIRMTATIG 690
             VL   E+     +R+  T+G
Sbjct: 672 TPVLGLDEIDPGAQVRLRGTVG 693


>UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1
           Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL
          Length = 703

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/692 (33%), Positives = 371/692 (53%), Gaps = 32/692 (4%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L    LI++I+ M+V+PLP  +LD L   N+   ++VL+ A+     L  + FP I+L T
Sbjct: 20  LVVLCLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAIVLLT 79

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLAL+++S R+ILM GH     AG++++ FG F++G N  +G+V+F I+ I+ F+VI
Sbjct: 80  TLFRLALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQFIVI 134

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGA R+AEV ARF LD MPGKQM+IDAD  AG+I  D  + RRS + +E+  YGS DGA
Sbjct: 135 TKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGSFDGA 194

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
            KF++GDAIAGILI+ IN++GG+++G++++ +S   +  +Y++L++GD LV QIPAL+IS
Sbjct: 195 MKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPALLIS 254

Query: 262 TAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
             AG +VTR+S ++Q++G  +V++L S+  V+L+S+ +  L+GL+PG P  VFL  +A L
Sbjct: 255 MGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTVSASL 314

Query: 321 LGLAWWIRGREQKAPAE------PKPVKMAENNTVVEATWNDVQLEDS--LGMEVGYRLI 372
               W     E+ A AE       +P   A      +A  +     D+  LG  +   L 
Sbjct: 315 GFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDTAFLGHPLVVILP 374

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHI-------RDNMDLQPARYRILMKGV 425
                           S+  +   E+G L P + +         +     AR R++++  
Sbjct: 375 HACAHTPSLSPQNLATSLHARVFDEVGLLLPTIVVGFAAADAIVSDAQDDARQRVVIRIN 434

Query: 426 EIGSGDAYP---GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           ++ +   Y    G  L  +     G     + +    G  A W+  A   Q Q  G    
Sbjct: 435 DVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV-MAQPAQLQDIGIAFR 493

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
            A   +      +I ++ +E FG QE + LLD +    P+L +++    + +  L ++L+
Sbjct: 494 SALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKEVY-RQIPVQKLCEILR 552

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E+V IR+M+ ILETLA     + D   LT  VR+ALGR I+ +       + VI L
Sbjct: 553 RLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHRIA-RNGHMKVIVL 611

Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
               E  + Q ++         L P +A+ L+ +   AL++   +    VLL +  +R  
Sbjct: 612 TPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVLLASMDVRRY 671

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
               +    P L V+S  E+SDN  + +   I
Sbjct: 672 ARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703


>UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria
           RepID=Q48IR5_PSE14
          Length = 727

 Score =  623 bits (1607), Expect = e-177,   Method: Composition-based stats.
 Identities = 228/703 (32%), Positives = 386/703 (54%), Gaps = 39/703 (5%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
           +++   +     +L+ ++MM++P+P +++D L   NIALS+++L+VA +   ++EF+A P
Sbjct: 14  ASKRTDVIIVAFMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALP 73

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
            ++L +TL RL+L++ +TR+IL++G+     AG +V+AFG F++ G   +G+VVF+I+ +
Sbjct: 74  PLILLSTLFRLSLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITV 128

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
             F+VITKGA R+AEV ARF LD MPGKQM+ID DL  G I   EA++RRS + +E+  +
Sbjct: 129 AQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMF 188

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGA KFV+GDAIAG++I+ +N++GG+++G++Q GM    AA  Y+LLT+GDGL+AQI
Sbjct: 189 GAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQI 248

Query: 256 PALVISTAAGVIVTRVSTDQ---DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           PAL+IS AAG +VTRV++D    D+  ++V QL ++   + L+A +L  +G++PG P LV
Sbjct: 249 PALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLV 308

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV-------QLEDSLG- 364
           F+   A L G A+ +  R+++A       ++ E+ T+ E   +           ED+L  
Sbjct: 309 FVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAAEDALES 368

Query: 365 ----------MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414
                     + +G  L      Q    L  RI ++       +G   P+  +  +  L 
Sbjct: 369 AERPRDSQVLLSIGTGLAEAAPLQ---PLRQRIEALCHDIRINLGVEVPLPEVYLDRSLP 425

Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALK 471
             R+++ ++GV +  G+ + G  L +        L    T +   P       W      
Sbjct: 426 VDRFQVELEGVPVSEGE-FSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHA 484

Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531
           ++ Q  G   + A  V+   L+  + ++AA+  G QE + +L+++  +  +L ++++  +
Sbjct: 485 DRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVL-RI 543

Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591
           + L  + + L+ L+ E V IR  R +LE++ E   I+SD   LT  +R  L R I+ Q+ 
Sbjct: 544 LPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYA 603

Query: 592 PGKDEVHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV 647
                +    L   LE  L   L    +    L   +   +L Q +  L          V
Sbjct: 604 DRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRR-LCDMLPEHDLTV 662

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           LLV+  LR  + R + R   QL VLS  EL+   +++   T+ 
Sbjct: 663 LLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705


>UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria
           RepID=HRCV_RALSO
          Length = 690

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 223/664 (33%), Positives = 346/664 (52%), Gaps = 21/664 (3%)

Query: 38  PLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIIL 97
           PLP  ++D L   NI LS+++L+V M+       +AFP++LLFTTLLRL+LN+AST+ IL
Sbjct: 30  PLPTMLIDALLGLNITLSVVLLMVTMYIPSATSLSAFPSLLLFTTLLRLSLNIASTKSIL 89

Query: 98  MEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVL 157
           +      A AG ++E+FG  +VGGN  +G+VVF+I+  + F+VI KG+ R+AEVGARF L
Sbjct: 90  LH-----ADAGHIIESFGKLVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTL 144

Query: 158 DGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMV 217
           D MPGKQM+IDADL AG +  +EA+KRR+ +  E+  +G MDGA KFV+GDAIAG++I +
Sbjct: 145 DAMPGKQMSIDADLRAGHLSPEEARKRRALLAMESQLHGGMDGAMKFVKGDAIAGLVITL 204

Query: 218 INIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-- 275
           +NI+ G+++G+  H M+ G AA  + +L+IGD +V+QIP+L+IS AAGV++TRVS ++  
Sbjct: 205 VNILAGIVIGITYHNMTAGEAANRFAVLSIGDAMVSQIPSLLISVAAGVMITRVSDEEQA 264

Query: 276 ----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE 331
                +G ++V QL ++   M  ++A+L    LVPG P+ +F+     +    + +R R 
Sbjct: 265 HKQSSLGMEIVRQLSTSARAMFTASALLMGFALVPGFPSFLFVALATLIFVFGYTLRNRA 324

Query: 332 QKAPAEP-KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLG-RIRS 389
           ++   +    +                +   S  + VG RL   +    D   L    + 
Sbjct: 325 KEGDGDEGDALPALLREGSKGKAPTIAEQAPSFTVPVGVRLGAELAKGLDVPALDTAFQQ 384

Query: 390 IRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTL 449
            R   A+ +G   P + I     LQP  Y + +  +         G  L  +   A    
Sbjct: 385 GRHALAEALGLPFPGIAIWKADALQPDSYEVRVHDIPGEPVAVPDGHLLIPDLPEALRAQ 444

Query: 450 PGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEA 509
             EA   P       WI  A   Q      T      V+A H+ H++ + A    G QE 
Sbjct: 445 AVEAAGLPNHPAP-HWIAPAHVAQDAALSATGQRVERVIADHVVHVLRRSAHLFVGLQET 503

Query: 510 QQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS 569
           Q +L+RV  + P L  +     V    +  VL+ LL+E+VPIR+MR ILE+L    P + 
Sbjct: 504 QWMLERVTTDYPGLVAE-AQKAVPAQRIADVLRRLLEEQVPIRNMRAILESLVVWGPKEK 562

Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624
           D   L   VR  LGR I  Q   G  ++  I LD  +E+ + QA++         L+P  
Sbjct: 563 DTLMLVEYVRGDLGRQIAHQATGGTRQMPAILLDLSVEQTVRQAIKPTPAGNFLTLDPQQ 622

Query: 625 ADRLLAQTQEALS-RQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
            + ++ + +  +        +   ++ +  +R  + R +   L  L V S  EL     +
Sbjct: 623 VEAIIMRLRGIMQGNPVETPSALAIVTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDL 682

Query: 684 RMTA 687
           R   
Sbjct: 683 RPVG 686


>UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae
           RepID=Q2NR60_SODGM
          Length = 665

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 214/678 (31%), Positives = 360/678 (53%), Gaps = 37/678 (5%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L   +L++ I+ M+++PLPA+++D L   NI ++++V + A +  R L F+ FP +LL T
Sbjct: 15  LLILVLVITIIFMIIIPLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVLLIT 74

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TL RLAL ++++R+IL +     A AG+++  FG F++G N  +G V+F I+ ++ F+VI
Sbjct: 75  TLFRLALTISTSRLILTD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQFIVI 129

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+ R+AEV ARF LDGMPGKQM+IDADL  G+I  + A++RRS + +E+  YG+ DGA
Sbjct: 130 TKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAFDGA 189

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
            KF++GDAIA I++  +N +GG+ VG+ QH M +  A  ++TLLTIGDGLV QIPAL+IS
Sbjct: 190 MKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPALLIS 249

Query: 262 TAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
            +AG+IVTRV+ D  ++G  ++ QL  NP V+L++A +   +G++PG P  VF++    L
Sbjct: 250 ISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVMLAMAL 309

Query: 321 LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
            G    +R R+ +    P     A         + +  + ++L + +          +++
Sbjct: 310 -GTLLLMRQRQTRVVPLPAAADYAGG-------YPERIMPEALAVILQVSRANYARLEKE 361

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
                    +R +F  + G   P + +            +++  +       +       
Sbjct: 362 ----QLCERLRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNEIRADVFTLHFDML--- 414

Query: 441 NPGTAAGTLPGEATVDPAFGLN----AIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
                   +PG+    P   L+    A+W     +E+    G  +  A   +      ++
Sbjct: 415 -----RRVIPGDRPCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVML 469

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
           + H  E FG QE + LLD++    P L ++++    T+  + ++LQ LL E++ IR ++ 
Sbjct: 470 THHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHA-TVQRIAELLQRLLMERISIRHLKL 528

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616
           I+E +A  AP + D   L   VR AL R I  Q+    + + VI L + +E  L  +L  
Sbjct: 529 IMEAMALWAPREKDVSALVEHVRCALARYICHQFA-ADNLLRVIMLSSEVEETLRDSLHT 587

Query: 617 GGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
                   L P +++ L+     AL    +     VLL    +R  +   ++     L V
Sbjct: 588 TSAGTFLNLGPQVSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEV 647

Query: 672 LSNLELSDNRHIRMTATI 689
           LS  EL+++  + +  TI
Sbjct: 648 LSFGELTESVTVNVIKTI 665


>UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN
          Length = 687

 Score =  617 bits (1592), Expect = e-175,   Method: Composition-based stats.
 Identities = 245/695 (35%), Positives = 375/695 (53%), Gaps = 44/695 (6%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +   +  +      + I+ +M+LPLP  I+D L   NIA+   +LL+A++    + F++F
Sbjct: 19  RRAGYSDVVLAFAAVTIIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSF 78

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RL+L++A TR IL+E +      G +VE FG  + GGN  +G VVF+I+ 
Sbjct: 79  PSVLLLTTLFRLSLSIAITRSILLEAN-----GGHIVETFGSLVAGGNLVVGFVVFLIIT 133

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           ++ F+VI KGA R+AEV ARF LD MPGKQ++ID+DL AGLI +DEAK++R  +  E+  
Sbjct: 134 VVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQL 193

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           +GS+DGA KFV+GDAIAGI+I++IN++GGL +GVLQ GM +  A  +Y++LTIGDGLV+Q
Sbjct: 194 HGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQ 253

Query: 255 IPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           IPA++ + AAG++VTR + D+D   +GE +  Q+   P V+L++  +   +  VPG P L
Sbjct: 254 IPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKL 313

Query: 312 VFLLFTAGLLGLAWWIRGRE----QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367
           VFL+ +  LLG A W         ++A   P+  + AE  TV E   +++     L +E+
Sbjct: 314 VFLMLSVVLLGFAAWRYRHHHPVLRRAFKVPEGERPAEEKTVNE---DEIAPPAPLQLEL 370

Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNM----DLQPARYRILMK 423
              L        +     RI  I ++  +E G   PV  ++ +     D     YR+   
Sbjct: 371 APSLAAAF---GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAF 427

Query: 424 GVEIGSGDAYPGRWL--AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           G  +  G   P      A      A  LPG     P  G    W   A        G  +
Sbjct: 428 GARLAFGRLSPNAQFRPARAGDANAPKLPG--FFPPLAGE---WTGQA--------GADI 474

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
            +    V+ H    + +  A   G QEA  L  R+ ++ P L ++++  VV    +  VL
Sbjct: 475 RDGLATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVL 533

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           + L++E VPIR++R   E + +    + D   LT  VRVAL R I  ++  G+  + V+ 
Sbjct: 534 RRLVEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLL 593

Query: 602 LDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           +   LE  L Q+++  GG     + P LA RL A+ +  L+RQ   G  PVLL +  +R 
Sbjct: 594 IHPELEDRLRQSVRVAGGATQLAISPELAGRLGAEVRSHLARQ-GEGIKPVLLCSLDVRR 652

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
            L + L     +L VLS  EL+ +  I     +  
Sbjct: 653 HLRKLLEIDFFELPVLSYQELAPDLRIVQAGQVNA 687


>UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105
           RepID=A6GN34_9BURK
          Length = 705

 Score =  613 bits (1581), Expect = e-174,   Method: Composition-based stats.
 Identities = 224/703 (31%), Positives = 381/703 (54%), Gaps = 30/703 (4%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +  +L   A L S + +++   ++IL+I+ MMV+P+   ILD+L   NI++S+++++ A+
Sbjct: 1   MIEVLNRFARLASARSEVVGASLIILMIV-MMVIPMGPGILDVLLAINISVSVVLVISAV 59

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
             +  L F++FP +LL TTL RL+L +++TR IL+EG      AG +V+ FG F+VGGN 
Sbjct: 60  LIETPLAFSSFPALLLMTTLFRLSLTISTTRQILLEG-----DAGHIVQTFGEFVVGGNV 114

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
           A+G+ +F+I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI +  AK+
Sbjct: 115 AVGLTIFLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQ 174

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           RRS++ +E+  +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS   A   YT
Sbjct: 175 RRSDLEKESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYT 234

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +L++GDGLVA IP+L++S AAG+IVTRV    +   +  + M+  L  N + + +S    
Sbjct: 235 ILSVGDGLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFC 294

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359
            L   VPGMP+ VFL  +A LL   ++I  +  KA       + ++   ++ A+   +++
Sbjct: 295 FLFAFVPGMPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSD---MLSASGKSIKM 351

Query: 360 EDSLG----MEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
           +D L       +  RL   ++     ++    R  R +  +++G L P+    ++ +   
Sbjct: 352 DDILHTNTFAPLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFV 411

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT---VDPAFGLNAIWIESALKE 472
             Y   + GV   S      R    +  +    +PG       D   G   +  +   K 
Sbjct: 412 EFY---VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKT 468

Query: 473 QAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVV 532
                    +   T + + +  L+ Q   +LF   E Q+ +  +  +  +  ++L   V+
Sbjct: 469 LLDQHKLEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ERVL 527

Query: 533 TLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFP 592
            +T + +VLQ LL E V I++MR+IL +L E    + DP  +   VR  L   I  Q   
Sbjct: 528 PVTKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQH-T 586

Query: 593 GKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPV 647
            + ++ V  L    E+L+ ++ +  G      ++    + L+   +E      +    P 
Sbjct: 587 HERKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLVGNYVPA 646

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           ++ +   R    + ++ SL  + VLS+ E+S N  I++   I 
Sbjct: 647 IVCSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689


>UniRef50_P74856 Secretion system apparatus protein ssaV n=63
           Tax=Gammaproteobacteria RepID=SSAV_SALTY
          Length = 681

 Score =  611 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 219/673 (32%), Positives = 375/673 (55%), Gaps = 28/673 (4%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
           Q +    ++L+ + MM+LPLP +++D+L T N+  S+++LL+A++    L+ + FP++LL
Sbjct: 22  QDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLL 81

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
            TTL RL+L ++++R++L++ +     AG +V+AFG F+VGGN  +G+VVF I+ I+ F+
Sbjct: 82  ITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFI 136

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           VITKG  R+AEV ARF LDGMPGKQM+ID DL AG+I  D A+  R  V QE+ F G+MD
Sbjct: 137 VITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMD 196

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM  A  +Y++L+IGDGL  QIP+L+
Sbjct: 197 GAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLL 256

Query: 260 ISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++L+A VL LL L+PG P +    F+
Sbjct: 257 ISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFS 316

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377
           A L      I  R +K+      V+  E +++V                +  RL P +  
Sbjct: 317 ALLA--LPIILIRRKKSVVSANGVEAPEKDSMV-----------PGACPLILRLSPTL-- 361

Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437
               +L+  I ++R    ++ G   P V+I   +  +P     ++   E     + P + 
Sbjct: 362 -HSADLIRDIDAMRWFLFEDTGVPLPEVNI--EVLPEPTEKLTVLLYQEPVFSLSIPAQA 418

Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
             +  G  A  +    T+    G    W+   +  +AQ  G  V   S  ++  L  ++ 
Sbjct: 419 DYLLIGADASVVGDSQTLPNGMGQ-ICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLL 477

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           +H  E  G QE + L++ + +   +L ++L    + +  + + LQ L+ E+V IRD+R I
Sbjct: 478 RHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRLVSERVSIRDLRLI 536

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
             TL + AP + D   LT  VR+AL R I ++  P    + ++ +   +E L+ ++++  
Sbjct: 537 FGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT 596

Query: 618 G-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
             G    L+ R   Q  + + +     A   ++ +   R  L +    +L  + +LS  E
Sbjct: 597 AMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQE 656

Query: 677 LSDNRHIRMTATI 689
           L +   I++  +I
Sbjct: 657 LGEESLIQVVESI 669


>UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6
          Length = 691

 Score =  608 bits (1568), Expect = e-172,   Method: Composition-based stats.
 Identities = 222/681 (32%), Positives = 377/681 (55%), Gaps = 23/681 (3%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           ++ +  +  +++PLP F+LDL+    +A S++V + A   +   E  +FP++LL   + R
Sbjct: 14  LIAVSFVIALIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMGIFR 73

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           +++N+++TR IL  G       G+V++ FG+F++G NF +GIV+F+IL++  F+V   G+
Sbjct: 74  VSINISTTRAILTTGDP-----GQVIKQFGNFVIGSNFVVGIVIFIILIVFQFIV-ANGS 127

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R AEV ARF LD +PGKQMAIDADLN  LI E EAK++R+ +  E +FYG+MDGA KFV
Sbjct: 128 SRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAGKFV 187

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GD +  +L+ V+NIV GL+VG++Q G+S G AA  YT LTIGDG+V+QI +L+++ +AG
Sbjct: 188 KGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAMSAG 247

Query: 266 VIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           VIVTRV   +D +V   +  +L  N  V+   +A+  L+G+   +P + F+     L  +
Sbjct: 248 VIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVLGII 307

Query: 324 AWWIR---GREQKAPAEPKPVKMAENNTVVEATWND----VQLEDSLGMEVGYRLIPMVD 376
            +  +    ++++   E +   +       EA  N      + +  + +E+G  +  +V 
Sbjct: 308 GYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVELGLNIAALVK 367

Query: 377 FQQDGELL-GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGDAYP 434
            + +GE    ++  +RK   Q++G   P ++ +DN   QP  +Y I +KGV + SG    
Sbjct: 368 QKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKA 427

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
           G  LA+        L  E T DP FG +  WI     E AQ++ Y V+E  +++ THL+ 
Sbjct: 428 GHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDV 487

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           ++ ++  EL  RQ+ + L+D +A E   L +++    +  + +  VL+ LL E + +RD+
Sbjct: 488 VLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDL 547

Query: 555 RTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--RLLL 611
            TI+E + +   I  +D   +TA VR  + + I +Q      +++ + L   +E    ++
Sbjct: 548 PTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIV 607

Query: 612 QALQGGGGLEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNH-ALRPLLSRFLRRSLPQ 668
                G  L   L   L  + + ++ +++ ++ G  PV+L      R    R L R    
Sbjct: 608 NTPYYGYALNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLD 667

Query: 669 LVVLSNLELSDNRHIRMTATI 689
           + VLS  ELS    +   A I
Sbjct: 668 VPVLSISELSPETEVEQIALI 688


>UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group
           RepID=A3P6H9_BURP0
          Length = 705

 Score =  607 bits (1567), Expect = e-172,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 366/716 (51%), Gaps = 45/716 (6%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           +  +LK      +    L++ I+S+M+LPLP   +DLL   NI +S+ +L+V M+     
Sbjct: 1   MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIA 60

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
             +AFP++LLFTTL RL+LN+AST+ IL+      A AG ++E+FG  +VGGN  +G+VV
Sbjct: 61  ALSAFPSLLLFTTLFRLSLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVV 115

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F I+  + F+VI KG+ R+AEVGARF LD +PGKQM+IDADL +GL+  +EA+K+R+ + 
Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            E+  +G MDGA KFV+GDAIAG++I +INIV G+ VGV  HGMS G AA  +++L++GD
Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235

Query: 250 GLVAQIPALVISTAAGVIVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
            +V+QIP+L++S AAGV++TRV+ +     + +G+++ +QL S+   +  +A +L     
Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQ-----KAPAEPKPVKMAENNTVVEATWNDVQL 359
           VPG P  +F+L  A L    + +  +           E + ++  + +         +  
Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355

Query: 360 EDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418
                  VG R+ P +        L   +   R +   E+G   P V +  +  L  A +
Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415

Query: 419 RILMKGVEIGSGDAYPGRWL------------AINPGTAAGTLPGEATVD-----PAFGL 461
            +L+  V   S      + +            A+     A         +      A G 
Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475

Query: 462 NAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMP 521
              WI+    E A     +V  A  ++A      I  HA    G QE Q +LD++  + P
Sbjct: 476 ATHWID----EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531

Query: 522 KLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVA 581
            L  +++  ++  T +  VL+ LL+E++ IR++RTI+E+L      + D   LT  VR  
Sbjct: 532 GLVAEVL-KILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGD 590

Query: 582 LGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEAL 636
           L R +  +   G+  +  +  D   E+ + QA++         L P  A RL+ + Q  +
Sbjct: 591 LSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLV 650

Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
                      L+ +  +R  + R + R +  L V S  EL ++  +R    +  +
Sbjct: 651 G--ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQ 704


>UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI
          Length = 579

 Score =  604 bits (1557), Expect = e-171,   Method: Composition-based stats.
 Identities = 228/571 (39%), Positives = 346/571 (60%), Gaps = 16/571 (2%)

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           + L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V  
Sbjct: 8   LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+TIGDG
Sbjct: 68  EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127

Query: 251 LVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310
           LVAQIP+L++STAA +IVTRVS + D+   + NQL ++PSV+  +  ++ +L +VPGMP+
Sbjct: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187

Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK----MAENNTVVEATWNDVQLEDSLGME 366
           L FLLF+A L    W +  +   A AE K ++         +  + +W  + L + + + 
Sbjct: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247

Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426
           +GY+L+ +VD  Q   L  RIR +R+  +   G L P + IR+N  L+P++Y I + G++
Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307

Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486
               D    + +A+      G + G    DPA+G+   WI++A K +A   GY V+++++
Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367

Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546
           V+ATH+N ++  +  +LF   +  QL +R++   P+L EDL    +  + L KV + LL 
Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426

Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606
           E V +RD+ TI   L   + +  D   L A VR+AL R+IT  +   K E+ V  L+  L
Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485

Query: 607 ERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           E LL     QA QGG  +      +P + ++  +   +   + +  G  PVLLV   LRP
Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
           LL+R+ R   P L VLS  E+ D   +++  
Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMG 576


>UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y7F7_COPPD
          Length = 671

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 227/677 (33%), Positives = 391/677 (57%), Gaps = 16/677 (2%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L   + +++ + M+++P+P+ +LD+LF FN+  S++VL+++++T+   EF++FP+++LF 
Sbjct: 4   LYTTLFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLMLFA 63

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINFMV 140
               L L V+S R IL+ G+ GA A      AFG  ++G GN+ +G+V+FV+L+I+ +MV
Sbjct: 64  VFFHLVLIVSSARAILVTGNPGALA-----TAFGKLIMGQGNWVVGLVIFVVLLIVQYMV 118

Query: 141 ITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDG 200
           IT G  RI+EV ARF LD MPG+QMAIDADL+AG I  +EA+++R  + +E+DF+G+MDG
Sbjct: 119 ITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAMDG 178

Query: 201 ASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVI 260
           AS+FVRG+ +A  L  V+N +GG++VG+L  G +   A   Y  + IG  L   I +L +
Sbjct: 179 ASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGVALQIAISSLAL 237

Query: 261 STAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
           S +A ++V RVS++Q +GE++ ++L + P ++ +   VL +  L+PG+P L+ +     L
Sbjct: 238 SLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGVLL 297

Query: 321 LGLAWWIR-GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           +      +   E   P + +  ++ E  +  EA    V + D++ +E GY L+P+ D   
Sbjct: 298 IWFGRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVGV-DAVELEFGYELLPLFDTTS 356

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
             ++L  I  +RK  ++E GF  P + I DN+ L+P +YRI ++GV  G G    G  LA
Sbjct: 357 GQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLLLA 416

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           +  G+    + G  T +P F L+A WI  + K +A+  G TVV+  T+V THL  ++   
Sbjct: 417 MGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLKSS 476

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
            A+L  RQ  + ++D V +  P + E+L   V +L  +  V + LL E++P+RD+  + E
Sbjct: 477 LADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRVFE 535

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
            + +      D  E   + R A    + +     +  + VI L   +ER L+++ Q G  
Sbjct: 536 LITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPGSE 595

Query: 620 LEPGLA----DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVLSN 674
           +   L+     +++ + ++A           VL+V+  +R  L   L R+ L +L VLS 
Sbjct: 596 IGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVLSY 655

Query: 675 LELSDNRHIRMTATIGG 691
            E+ D +++ +  ++G 
Sbjct: 656 NEIMDAKYV-VVGSVGA 671


>UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria
           RepID=Q0C5I9_HYPNA
          Length = 692

 Score =  601 bits (1551), Expect = e-170,   Method: Composition-based stats.
 Identities = 241/679 (35%), Positives = 378/679 (55%), Gaps = 17/679 (2%)

Query: 24  GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83
             I ++ I+ +MVLP+PA++LD+  T + ALSI++    +F ++ L+F++FP+ILL + +
Sbjct: 16  LAIGLMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASLV 75

Query: 84  LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143
           LRLALNV+ST++I+ EGHTG  AAG V+E F  F++GGN  +G+VVF +LVI+NFMVITK
Sbjct: 76  LRLALNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVITK 135

Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203
           GAGR+AEVGARF LD MPGKQ+AID+DL  G I  +EAK RR    +EA F GS+DGASK
Sbjct: 136 GAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGASK 195

Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263
           FV+GDAIAG+LI  +N++ G+  GV+ H +S+  A  +Y++LT+GDGLV+QIPA+++S A
Sbjct: 196 FVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSVA 255

Query: 264 AGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGL 323
           A +++++   +  +   +  QL  N + + + A +L +  L+PG+P L F+   AG   +
Sbjct: 256 AALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAAV 315

Query: 324 AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGEL 383
           A++ +    +  A  +     E+         D    D + +EV   L+ MV   ++G  
Sbjct: 316 AYFTKKAADEKAASEET--KPEDAAPKAPKIGDSIYADEIHLEVAPDLVNMVLVGENG-F 372

Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443
             RI  IR+  A+E GF+ P + + DN  L+   YR+ ++GV + SG   PG+ LA+   
Sbjct: 373 ESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIEE 432

Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
                L GE   +P +   A W+ SA K++       VVE   V+ATH+  +I  + + +
Sbjct: 433 NQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSLV 492

Query: 504 FGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           F R    + LD +        A    +  ++ +PG VT   L  VL+ LL E+VPIR++ 
Sbjct: 493 FTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNLF 552

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL---- 611
            I+ET+AE  P       +  +VR  L   I  +    +  + +I L T  E+       
Sbjct: 553 LIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQLSTSWEQKFTEYEV 612

Query: 612 --QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
             ++      L P +   L+   Q  L+     G    +  +   R  L   L     + 
Sbjct: 613 TNESGGSDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSSRRRRFLQTVLASKGIRN 672

Query: 670 VVLSNLELSDNRHIRMTAT 688
            V++  E++      +   
Sbjct: 673 AVVAYEEINSKSKPYIIGV 691


>UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU
          Length = 645

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 216/671 (32%), Positives = 352/671 (52%), Gaps = 72/671 (10%)

Query: 34  MMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAST 93
           +M+LPLP  ++D L   NI LS+++L+V M+   ++  ++FP++LLFTTLLRL+LN+AST
Sbjct: 30  LMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAST 89

Query: 94  RIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGA 153
           + IL+      A AG ++E+FG  +VGGN  +G+VVF+I+  + F+VI KG+ R+AEVGA
Sbjct: 90  KSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGA 144

Query: 154 RFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGI 213
           RF LD MPGKQM+IDADL  G +  DEA+++R+ +  E+  +G MDGA KFV+GDAIAG+
Sbjct: 145 RFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAGL 204

Query: 214 LIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVST 273
           +I ++NI+ G++VGV  HGM+ G AA  + +L++GD +V+QI +L+IS AAGV++TRV+ 
Sbjct: 205 VITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVAN 264

Query: 274 DQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--W 326
           +       +G  +  QL SN   ++ ++ +L     VPG P ++FLL  A +    +  W
Sbjct: 265 ENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTIW 324

Query: 327 IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLIPMVDFQQDGEL 383
            + R+     + K    +      EA        D    L M +  +L  ++D  +   L
Sbjct: 325 RKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLDPAR---L 381

Query: 384 LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPG 443
              I S R++  + +G   P + I     LQ  +Y +L+  V     +            
Sbjct: 382 DQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDVPETRAEL----------- 430

Query: 444 TAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
                   E T D         +++AL  QA                     +   A   
Sbjct: 431 --------ENTDD---------MQAALARQAISP------------------LHARAHLF 455

Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563
            G QE Q +L++VA + P L  + V   +    +  VL+ LL+E++P+R++++ILE+L  
Sbjct: 456 VGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESLVV 514

Query: 564 HAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG----- 618
             P + D   LT  VR  LGR +      G  ++  + LD  +E+L+ Q+++        
Sbjct: 515 WGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGNFL 574

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
            L P  A++L+ Q +  +        P  ++ +  +R  + R +   L  L V S  EL 
Sbjct: 575 ALPPEQANQLVEQVERIVGDHA--QHPLAVVASMDVRRYVRRMIEARLTWLQVYSFQELG 632

Query: 679 DNRHIRMTATI 689
               ++    +
Sbjct: 633 SEVQLQPIGRV 643


>UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae
           RepID=Q1D0P1_MYXXD
          Length = 688

 Score =  574 bits (1479), Expect = e-162,   Method: Composition-based stats.
 Identities = 230/688 (33%), Positives = 367/688 (53%), Gaps = 25/688 (3%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           LK+     +   + +  +L  +++PLPA++LD     N+A S+ +L+ A+  +  L+  +
Sbjct: 9   LKARNSSDVVLAVAMAAVLGALIIPLPAWLLDAGLAVNLAASVALLVAALRARDALKVTS 68

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPT+LLFTTL RLALNV+STR+ L EGH     AG V++AFG F+V G++ +G VVF IL
Sbjct: 69  FPTLLLFTTLFRLALNVSSTRLALAEGH-----AGDVIQAFGEFVVRGDYVVGAVVFAIL 123

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
            ++  +V+TKGA R+AEV ARF LD MPGKQM+IDADL AG I + +A++RR ++ +E+ 
Sbjct: 124 TLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLERESQ 183

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
            +G+MDGA KFV+GD IAG++I+ +N++GG ++GVLQ GM +  AA ++ L+ IGDGLV+
Sbjct: 184 MFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGDGLVS 243

Query: 254 QIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310
           Q+P+L I+ AAG++VTRV++   +  +G ++  Q F     + + A +   L L+PGMP+
Sbjct: 244 QVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMPGMPH 303

Query: 311 LVFLLFTAGLLGLAWWIRGR-----EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365
           + FLL   GL GL   +        E+KA A    V         E+  + V +   L +
Sbjct: 304 VTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGAPPESAASPVGV-SPLTL 362

Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRILMKG 424
           ++   L  + + +    +   +  +R +   E+G   P + +R     L P  YR+L+  
Sbjct: 363 DMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVLVDE 422

Query: 425 VEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           V  G G   PG   A+ P        +  EA  +P+ G     I  + +   +     + 
Sbjct: 423 VPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQVPLR 482

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
               +V+ H+  ++   AA+L G Q+ Q LL+ +  + P L ++ +   V L  L  VL+
Sbjct: 483 RPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTDVLR 541

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E V IRD+R ILE L      + D   L    R AL R ++ ++ P    ++   +
Sbjct: 542 KLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLSHKFAP-TGPLYAYLV 599

Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
           D  +E +L      G   +P     +L   ++  +         VLL    +R  L R  
Sbjct: 600 DPEVEEVLRGMGPRGLAPDPERVAEILEGVRQVATE-----GRAVLLTAPDVRRPLRRLC 654

Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIG 690
             + P + VL+  EL     IR    + 
Sbjct: 655 EGAFPDVAVLTYGELDGALQIRPIGRLS 682


>UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11M51_MESSB
          Length = 691

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 197/659 (29%), Positives = 335/659 (50%), Gaps = 17/659 (2%)

Query: 36  VLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRI 95
           +LPLP   +DL+ T N++ SI++LL+++     ++F+ FP +LL TTL RL++++++TR+
Sbjct: 30  ILPLPPAAMDLMITLNVSASIIILLMSLQMHNPVQFSTFPALLLVTTLFRLSISISTTRL 89

Query: 96  ILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARF 155
           IL+EG      AG++VE FG   +GGN A+G+V F+I+ ++ F+VITKGA R+AEVGARF
Sbjct: 90  ILLEGD-----AGRIVETFGQVAMGGNLAVGLVTFLIITVVQFLVITKGADRVAEVGARF 144

Query: 156 VLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILI 215
            LDGMPGKQM+IDAD+ AG + + +A+  R  + +EA  +G+MDGA KFV+GDAIAG++I
Sbjct: 145 TLDGMPGKQMSIDADVRAGNMDQLDARHARQNLEREAKLFGAMDGAMKFVKGDAIAGLVI 204

Query: 216 MVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ 275
            VIN+VGG+ +G+ Q G+  G A   Y LLT+GDGLVAQIPAL+IS AAG +VTRV+   
Sbjct: 205 TVINLVGGVAIGMAQRGVGFGEALSLYALLTVGDGLVAQIPALLISVAAGNMVTRVTNPN 264

Query: 276 --DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK 333
             D+G ++  Q  +N   ++++  ++ L GLVPG P  +F+   + + G   W   R+ +
Sbjct: 265 GMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPGFPTWIFVSVGSAMTGGVIWTIRRQHR 324

Query: 334 APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKK 393
                +       + +++    ++ +       V   L   +             ++R  
Sbjct: 325 DVLSAQTDWSLRLD-LLQRQCAEIAMRTGAKEAVRLILPKEIYKLDVTAFFSAFEAVRIS 383

Query: 394 FAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEA 453
            AQE G       + +  +  P  Y+I +       G             +    L G  
Sbjct: 384 IAQEYGIPT-GYWLFEVDEGSPHSYQIYVNQELADCGIFRADSLFVKAHTSYLDAL-GIP 441

Query: 454 TVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLL 513
            +          + +  +++   +          +  HL  +  +    +   Q    +L
Sbjct: 442 WLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQLLMHLKRVAVERLDVMASLQNITAIL 501

Query: 514 DRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHE 573
           + V    P L  DL     +   +  V++NLL E++P+     ILE + + +  + DP  
Sbjct: 502 NEVQTNNPALVGDL-REAASNNQIAGVIRNLLRERIPVTSRVRILEGILKWSQKRPDPGY 560

Query: 574 LTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRL 628
           L   VR+ +   IT+++      + V+ +   +E L+ + ++         LEP ++  +
Sbjct: 561 LAQKVRIEIADFITKRFA-ADGFLPVVVVSPTVESLMREGMRNTEEGNFLILEPSISAYI 619

Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
             Q ++    +   G  PVL++   +R  +   L      L VL+  E++    I    
Sbjct: 620 AKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNILYEHGIHLPVLAYQEITPETVIYPVG 678


>UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B2TCZ3_BURPP
          Length = 691

 Score =  552 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 229/684 (33%), Positives = 363/684 (53%), Gaps = 21/684 (3%)

Query: 17  TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76
            +   LA    +L +L +++LP+P+F+LDL    +   S ++L   ++  + +E ++FP+
Sbjct: 17  ARHADLAVGAGMLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFPS 76

Query: 77  ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136
           +LL TTLLRLAL +AST++IL+  H     AG+++ AFG  +VGGN A+G+VVF++L  I
Sbjct: 77  LLLVTTLLRLALAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSAI 131

Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196
            F+V+ KGA R+AEV ARF LDG+PG+QM+IDADL  GLIG  EA + R E+ +E  FYG
Sbjct: 132 QFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFYG 191

Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256
           S+DGA KFV+GDAIAG+++ ++NI GGL VG+ Q GMS+  A  +YT+LT+GDGLV+QIP
Sbjct: 192 SLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQIP 251

Query: 257 ALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           +L++S +AG++VTRVS+     ++G  +  QL ++P  M+++      L  +PG P++ F
Sbjct: 252 SLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQF 311

Query: 314 LLFTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370
           +L    L+GLA  +  +   A        P    +    V+   +DV+L  S  + V   
Sbjct: 312 VLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRVRLG 371

Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430
                +     EL  ++  +R+     +G   P + +  +  L   RY + +  V    G
Sbjct: 372 -SAACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVDIDDVPFSGG 430

Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
               G  L ++  T   T+ G     P     ++W+ +               A+ ++  
Sbjct: 431 TLLAGHVL-VSGDTERVTMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMKSSANGLLCD 488

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
           HL  +  + A    G QE + LL+ V  E  +L   +   VVT   +  VL++LL+++V 
Sbjct: 489 HLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRVS 547

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD-EVHVIGLDTPLERL 609
           IR+MR ILE + +    +     +    R+AL   + + +      EVH   L+   E  
Sbjct: 548 IRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEAE 607

Query: 610 LLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV--LLVNHALRPLLSRFLRRSLP 667
           L   +  G   EP     L A   E+L R        V  ++    LRP L R LR    
Sbjct: 608 LEAQIDLGPDGEPRCV--LDADRLESLQRGFAARNDVVRLVVTTAVLRPHLERVLRTLGM 665

Query: 668 QLVVLSNLELS-DNRHIRMTATIG 690
           +  VL+  E+  D   +R+ AT+ 
Sbjct: 666 RTDVLAMEEIPLDEYRVRVIATLA 689


>UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae
           RepID=Q0B7U0_BURCM
          Length = 749

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/702 (33%), Positives = 368/702 (52%), Gaps = 39/702 (5%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
            L ++    L     I+ ++++ +LPLP   LD + + N+A S+++L V+ +    + F+
Sbjct: 40  RLGASPRADLFLAGFIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFS 99

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FP +LLFTTL RLALN+AS ++IL+  +     AG V++AFG  +VG N  +G VVF++
Sbjct: 100 SFPALLLFTTLFRLALNIASCKLILLHAN-----AGHVIDAFGRLVVGNNVVVGGVVFLV 154

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           + ++ F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG+I  DEA++RR  + QE+
Sbjct: 155 IAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQES 214

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
             +G+MDGA KFV+GDAIAG++I  INIV G+ VG L HGM +G A + Y +LT+GDG+ 
Sbjct: 215 QMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMA 274

Query: 253 AQIPALVISTAAGVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           +QIP+L++S AAG++ TRV+T       +GEQ+  QL ++P  +L++A VL    +VPG 
Sbjct: 275 SQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGF 334

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
           P   F L   GL   A     R+  AP+              +     V     +   + 
Sbjct: 335 PKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA 394

Query: 369 YRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427
             L   +    +  +L   + S + +   ++G + P + + D+       YRI ++ V  
Sbjct: 395 VSLSDDLRTTLNLAQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIYLQDVLA 454

Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQIQGYTVVE 483
             G   PG  L          LP  A   P  AFG    A+WI+              + 
Sbjct: 455 AHGALKPGWLLW----DGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKWLT 506

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
           +   +A H+  ++ QHA EL G QE Q L+  V +E P+L  +L   +V L  + +VL+ 
Sbjct: 507 SEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELT-RLVPLQRVTEVLRR 565

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
           LL E+VPIR++R I E+L   AP +  D   L  +VRV L R IT +      ++ V+  
Sbjct: 566 LLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVLF 625

Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE---------MLGAP-PV 647
           +  L+  +  A+          L   +   +  Q +  +   +           GAP   
Sbjct: 626 EQNLQERIESAVMRTKQGNFLALSSAIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPRLA 685

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           ++V    R  +   L+  LP+L VLS  E+ ++  +     +
Sbjct: 686 VMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWV 727


>UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1
           Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK
          Length = 644

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 203/692 (29%), Positives = 341/692 (49%), Gaps = 66/692 (9%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           LP      +   +       +I+ MMVLP+P  ++D +  FN+A + +VL+  ++ +  L
Sbjct: 5   LPPVAAIAKRTDILFAGFFAVIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVL 64

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           + + FP ++L  TL RLAL +++TR++L EG      AG+++ AFG F+V GN  +G+++
Sbjct: 65  DISTFPAVILIGTLFRLALTISTTRLVLAEG-----DAGEIISAFGSFVVAGNVVVGLIM 119

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL +G I  + A+KRRS++ 
Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +E+ F+G+MDGA +FV+GDAIAG++I+ +N++GGL +G+ Q G+S   AA+ Y+LL+IGD
Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GLV+QIP+++++ AAG +VTRVS D+  ++G ++  QL   P  + ++AA+    GL+PG
Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299

Query: 308 MPNLVFLLFTAGL--LGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365
            P  V      GL  L L    + R Q    +       + N    A  +  +  D +  
Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGDPIVA 359

Query: 366 EVGYRLIPMVDFQQ-DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
            +    +  ++     G L  RI    +  A+ +G    V     +  +      I ++ 
Sbjct: 360 TLSAATMSRLEANNLGGHLDARI----RVAARAVGVAITVPTFNADPRMGEDMIHIQVEN 415

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
           V                                                A +        
Sbjct: 416 VP-----------------------------------------------AGLISCKADRP 428

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
           + ++A  +  ++ +H   +F   +A Q L  +   + KL  D V   V+   L  V++ L
Sbjct: 429 AELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRL 487

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           LD  V +   R +LET+ +  P + DP +L    R AL R I       +  + V+    
Sbjct: 488 LDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSP 547

Query: 605 PLERLLLQALQGGGGLE----PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
             ER +          E         RL  +T++AL      G  PV+++   LR L   
Sbjct: 548 EWERFVRSYSDASDKTEKEEISEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQA 607

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            + R   ++ V++  E+  +    +   +G +
Sbjct: 608 LMIRHNCRVPVVAIEEIDHDITSDVVGMVGVQ 639


>UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp.
           SKA58 RepID=Q1NCU5_9SPHN
          Length = 654

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 206/681 (30%), Positives = 335/681 (49%), Gaps = 71/681 (10%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             L   + ++ I+++++LPLPA ++D+L   NIA+ +++LL  +   + L+F+ FPT+LL
Sbjct: 17  ADLMLIVAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTLHITKPLDFSTFPTVLL 76

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
            +TL RL+L++A+TR+IL       A  G +++ FG  + GGN  +G+VVF+I+ ++ F+
Sbjct: 77  LSTLFRLSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNLIVGLVVFLIVTVVQFI 131

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           VI+KGA R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++RR  +  E+  +GS+D
Sbjct: 132 VISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLELESKLHGSLD 191

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GA KFV+GDAIA I+I++IN+VGGL VGV  HGM  G A + +++LTIGDGLVAQIPAL 
Sbjct: 192 GAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGDGLVAQIPALF 251

Query: 260 ISTAAGVIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316
            + AAG++VTR    S D  +G  +V Q+ S P V+  +A +  L+ L+PG P  VF+  
Sbjct: 252 SAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIPGFPAAVFIGI 311

Query: 317 TAGLLGLAWWIRGREQK---APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373
              L   A W            A             + A     +    L +E+    + 
Sbjct: 312 AFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAPRPVRPLVLEIAAPALD 371

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
               ++   L  R   + +     +G   P   +   +               +  G+  
Sbjct: 372 AAQAER---LRARFVLVIEAVQARLGLPMPAGEVTTRL---------------LPEGERP 413

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
                A      +G + G                                    +A  + 
Sbjct: 414 RWTLSAYEAPVGSGEVDGPF-------------------------------EEAIAPAIE 442

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            L+ ++AA   G QE   +L+R+  + P L +++V   V+   + +VL+ L +E+V +R+
Sbjct: 443 ALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVV-RAVSSPRIAEVLRLLAEEEVCLRN 501

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           +R +LE +AE    + +   +    RVAL R I            V+ +   LER     
Sbjct: 502 LRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHM-ADGRFPVLVVGGRLERFFRDN 560

Query: 614 LQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           LQ   G     + P  A  L+   +   ++         ++  + LR  L +     L  
Sbjct: 561 LQTVEGVAHLAMPPDQARTLIGMIRSETAKCGAR----AIITAYDLRRPLRQLTAGDLFG 616

Query: 669 LVVLSNLELSDNRHIRMTATI 689
           L +L   EL+    + +  T+
Sbjct: 617 LPILCYNELTPALPLDVVGTL 637


>UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli
           RepID=B3Q2A2_RHIE6
          Length = 643

 Score =  507 bits (1306), Expect = e-142,   Method: Composition-based stats.
 Identities = 203/690 (29%), Positives = 334/690 (48%), Gaps = 67/690 (9%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
            +R  A     Q   +   +    +++M+VLPLP  +LD+L  FN++ + +VL+   + +
Sbjct: 2   KVRSSAIAMLAQRTDMLLAVFFASVVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLK 61

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
             LE + FP ++L  TL RLAL ++STR++L +     A AG+++ AFG F+V GN  +G
Sbjct: 62  SVLEISTFPAVILIGTLFRLALTISSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVG 116

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
           +++F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL  G I  + A+KRRS
Sbjct: 117 LIIFLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRS 176

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
            + QE+ F+G+MDGA +FV+GDA+AG++I+ +N++GGL +G+ Q G+S   AA  YTLL+
Sbjct: 177 RLEQESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLS 236

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           IGDGLV+QIP+++++ +AG++VTRVS D +  +G  +  +LF  P  + ++AA+    G 
Sbjct: 237 IGDGLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGF 296

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364
           VPG P  V       L GLA+ +  R     A           +      +  +  D + 
Sbjct: 297 VPGFPTGVLGAIGLCLAGLAFMVHRRRAGPAAAGSA---NAVESANSYPLDRTKYGDPVI 353

Query: 365 MEVGYRLIPMVDFQQDGELLG-RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
             V    +  ++  + GE+L  RIR      A+ +G    V     +  +      + ++
Sbjct: 354 ATVAVETLARLEAMRLGEMLDGRIRMA----ARAVGVSVTVPTFNADPRMAEDLIHLQVE 409

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
            V                                                A +       
Sbjct: 410 NVP-----------------------------------------------AGLVSCGPER 422

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
            +  +A  +  ++ +H   LF   +A Q L  +   + KL  D V   V L     V++ 
Sbjct: 423 TAEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAID-VATQVPLMLTVAVVRR 481

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LLD  V +   R +LE +  HA     P  L  + R AL + I       +  +  + L 
Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540

Query: 604 TPLERLLLQALQGGGGLEPGLADR---LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
              +  +      G   +  +A+R   L  + ++AL      G  P+++V    R L   
Sbjct: 541 AEWDHFIRSYDAAGATEKIEIAERLRLLAEKARQALEDANERGYDPIIIVPGEWRLLTQT 600

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +     ++ VL+  E+  +  I     IG
Sbjct: 601 LMIHHNCRIPVLAAEEIDRDITIETIGEIG 630


>UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B1T6S7_9BURK
          Length = 679

 Score =  485 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 217/676 (32%), Positives = 338/676 (50%), Gaps = 42/676 (6%)

Query: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85
           I +L +L +++ PLP   LD++   N+ +S+++L ++++    L  + FPT+LL  TL R
Sbjct: 24  IAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTFPTLLLVATLFR 83

Query: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145
           L LN+A+TR IL+ G+     AG ++  FG  +VGG+  +G VVF+I+ II F+V+ KGA
Sbjct: 84  LGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIAIIQFVVVAKGA 138

Query: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205
            R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + FYG+MDGASKFV
Sbjct: 139 DRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGASKFV 198

Query: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265
           +GDAIAG+LI ++N+VGG+++G   +G  +   A  YT+LT+GDGLV+QIP+L+IS AAG
Sbjct: 199 KGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLISFAAG 258

Query: 266 VIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           +++TRV+   +   VG  + +Q+ S P  +  +A V     LVPG P L FL     L  
Sbjct: 259 ILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGVLLAL 318

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG--MEVGYRLIPMVDFQQD 380
           LA  I     +     +   +A  +           +E  LG  + +  RL P +  Q  
Sbjct: 319 LAALI----PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRVRLAPELFDQLK 374

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
              L R+    ++  +E G   P + +  +  L    Y + +  V I  G     +    
Sbjct: 375 PLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQLERTQGEGE 434

Query: 441 NP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
              G +  +LPG A  +                       + +E   ++   +   I   
Sbjct: 435 RKRGLSLPSLPGRAGAETG---------------------SQMEIEAMLVGRIGDAICAK 473

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
                G QEA  L D +++  P+L  +++   + L     VL  LL   V IR++R I E
Sbjct: 474 PWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTGVGIRNLRAIAE 532

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
            L + +   +D   L +  R AL   I+ QW   +  + +  L   LE +L Q L   G 
Sbjct: 533 GLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQRLIASGQ 592

Query: 620 LEPGLAD-----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
           ++            + Q    +          VL+    LR  +   LR     + VL+ 
Sbjct: 593 IKFIDLQVDEQHAFVQQVIADMQTTWRDHPGAVLVTGQDLRRSVEALLRGGERGVTVLAV 652

Query: 675 LELSDNRHIRMTATIG 690
            E+SD    R+  TI 
Sbjct: 653 EEISDEVTYRVLHTIS 668


>UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH
          Length = 628

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 180/688 (26%), Positives = 335/688 (48%), Gaps = 73/688 (10%)

Query: 15  KSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           K     +L  P  ++   L+ +++++ LP  ++D     +   S ++L++ +   + L+ 
Sbjct: 4   KLRNSTLLFNPSSVMIAFLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKV 63

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
              PT++L  T  RL L++A+TR I+          G+V+E  G F++GGN   G+++FV
Sbjct: 64  TFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGRVIETIGEFVMGGNLISGLLIFV 118

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           I+ I+ F+V+TKG  R+AEVGARF LD +PGKQM ID DL +GLI  ++A+K R+++  E
Sbjct: 119 IITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTE 178

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
              +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q  +S+  + + +++LTIGDGL
Sbjct: 179 NKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGL 238

Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--P 309
           V+QIP+L++S A GV +TR+   +D     ++Q+ +       S  V+G++ ++ G+  P
Sbjct: 239 VSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNP 298

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369
            L+++     +L +   +   ++            E + V E             ++  +
Sbjct: 299 TLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVEPEGSGVFE------------SLKFVF 346

Query: 370 RLIPMVDFQQDGELLGRIRSIR-KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           R     D Q    +  R++ +  + + Q +G   P V ++ ++D+  A Y   + GV   
Sbjct: 347 R-----DAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGV--- 393

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
                  +    +  ++ G +  E   D  F L+                    + S  +
Sbjct: 394 -------QTYQFSQNSSEGIV--EILNDDVFNLHD-------------------DLSANL 425

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
              +++ I     E +  Q +  ++  +A +  ++ +  +   V L  +H VL+ ++   
Sbjct: 426 DEIISYFIQTRLVEKYNLQYSSNIVAELASQ-SEIMKSEIDSAVGLNRVHDVLKQMIRSP 484

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
               D  +  E+L   + ++SDP      +R      IT +      ++HV+ L      
Sbjct: 485 EFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPE--- 541

Query: 609 LLLQALQGGGGLEPGLADRLLA---QTQEALSRQEMLGA-PPVLLVNHALRPLLSRFLRR 664
            L + + G    E    +RL+      +  + R  M     PVL+VN     L+  F+++
Sbjct: 542 -LTEEISGYVAGEFEDFERLIEIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQ 600

Query: 665 SLPQLVVLSNLELSDNRHIRMTATIGGK 692
            +  L+V S+ ++ DN  I  +  I  +
Sbjct: 601 VMSTLLVCSHTDIVDNNCISSSEVINVQ 628


>UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P7_DESVU
          Length = 398

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/269 (50%), Positives = 203/269 (75%), Gaps = 6/269 (2%)

Query: 35  MVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTR 94
           M+LPLP  ++D L   N+ALS ++L+++M+ +  L+F+ FPT+LLFTTL R+ LN+ +TR
Sbjct: 33  MILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTR 92

Query: 95  IILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGAR 154
           +IL++     A AG+++  FG + +GGNF +G VVFVIL I+ F+VI KGA R+AEVGAR
Sbjct: 93  LILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAERVAEVGAR 147

Query: 155 FVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGIL 214
           F LD MPGKQM+IDAD+ AG+I  +EA++RR+ V+QE+  YG+MDGA KFV+GD+IAG++
Sbjct: 148 FTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMI 207

Query: 215 IMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS-T 273
           + ++NIVGG ++G+ QHGM+ G A  +Y +LTIGDGLV+QIP+L++S +AG+++TR   +
Sbjct: 208 VALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITRSGDS 267

Query: 274 DQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302
             +VG Q+  Q+F  P  +L++      L
Sbjct: 268 GGNVGAQIGGQIFGQPKALLMAGGAGLSL 296


>UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae
           RepID=C4PLR3_CHLTZ
          Length = 605

 Score =  377 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/681 (24%), Positives = 298/681 (43%), Gaps = 110/681 (16%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N + + W+I+A P  IL  L   +  LP +++D     N+A S+ ++      + +    
Sbjct: 30  NFRGSSWKIVAIPSCILFTL---IFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FP++LL+  LLRL LN+ASTR IL  G      A  ++ A G+F   G+  + + V ++
Sbjct: 87  IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG   A  ++S + +E+
Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           D++ +M+G  +FV+GDAI   +++ +NI+  L +G   H   +        L  +GD LV
Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDL-------WLTVLGDALV 254

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +QIPAL+ S AA  ++ +V   + + + +++    +    L  A +L  +  +PG P  +
Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
            L F+  LL L +                 +      VE    D  + +   +       
Sbjct: 315 ILGFSV-LLFLGY---------KNPSSGETLLFQKERVEFVLPDEGVGNPANL------- 357

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV-VHIRDNMDLQPARYRILMKGVEIGSGD 431
                          +  R +  QE+G + P  + +R      P   R++  G E+   +
Sbjct: 358 --------------YKDARNQIYQELGVVFPEAIVVRHVTGSSP---RLIFSGQEVALRE 400

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
                                                     A ++    +   T+    
Sbjct: 401 LSC--------------------------------------PAILESIRQLAPETI---- 418

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
                   +     R     L+D   +      E+++P  ++  +L  +L+ L+ E+V +
Sbjct: 419 --------SERFVTR-----LVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSL 465

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
                ILE +  +     +  EL   VR  LG+ I    +  +D + VI +D+ +E+ + 
Sbjct: 466 HLFPKILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVR 525

Query: 612 QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
            + Q    L+  L ++++AQ +  L      G    ++     R  L R +    P L+V
Sbjct: 526 DS-QEKVVLD--LNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYFPDLLV 580

Query: 672 LSNLELSDNRHIRMTATIGGK 692
           L++ EL +   I +   +  +
Sbjct: 581 LAHSELPEEIPITLLGAVSDE 601


>UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
           RepID=A8DVR9_NEMVE
          Length = 383

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 229/384 (59%), Gaps = 8/384 (2%)

Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219
           MPG+QM+IDADLN G I + EA++RR  + +EA FYG+MDGASKFV+GDAIAGI+I++IN
Sbjct: 1   MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60

Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279
           I+GGL++GV+QH +    A ++Y+LLTIGDG+V Q+PAL+I+   G+IVTR ++D ++ +
Sbjct: 61  IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120

Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK 339
           +++ Q+ S P  +LL  A L  L   PG+P L  L+  A +  +AW +      +  +  
Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180

Query: 340 -------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392
                    + A+     E         + + + VG     +V  Q    L+ RI + RK
Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVS-QPGSVLMDRIATFRK 239

Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452
           + AQ++G + P V  +D   L   RY I + GV  G G+A   R LAI+P      +PGE
Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299

Query: 453 ATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQL 512
            T DP +GL A+WIE   +  A +  +T+V+A TV  THL  ++ + +A L  R E  +L
Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359

Query: 513 LDRVAQEMPKLTEDLVPGVVTLTT 536
           L+RV Q    L E+L+P V++++ 
Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383


>UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae
           RepID=Q9Z8I0_CHLPN
          Length = 582

 Score =  365 bits (938), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 142/664 (21%), Positives = 277/664 (41%), Gaps = 101/664 (15%)

Query: 29  LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88
           L IL ++ LPLP  +LD     + ALS++ +        +     FP   L+  LLRL L
Sbjct: 16  LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75

Query: 89  NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148
           N+ASTR I+  G      A  ++ + G F   G+        ++L  +NF++++KG+ RI
Sbjct: 76  NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130

Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208
           AEV +RF L+ +P KQMA+D+DL +G       KK+++ + +E DF+ +M+G  +FV+GD
Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190

Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268
           AI   +++++N+V    V  L +  + G+A E      +GD LV+Q+PAL+ S AA  ++
Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328
           +++  ++ +   +            + + ++  L  +P  P    +L  + L     W+ 
Sbjct: 246 SKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLL-----WLA 300

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388
            R+++  +E   ++ A +                                Q+ +     R
Sbjct: 301 YRKEEPASEDSCIERAFSYVEGACPKE-----------------------QESQFYQVYR 337

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
           +  ++  +++G   PV+              + ++           G+ + ++  T    
Sbjct: 338 AASEEVFEDLGVRLPVLT------------SLRIEERPWLR---VFGQNVYLDEMTPEAV 382

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           LP                   +  +A                    ++ ++         
Sbjct: 383 LPFLR---------------NIAHEALNA----------------EVVQKY--------- 402

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
               L+   +      ED+VP  ++L++L  + + L+ E+V ++    ILE +A +    
Sbjct: 403 ----LEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEAVAVYQNSG 458

Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRL 628
                L   VR +LG  I +  +  K  + VI +D  +E L+  +        P + + +
Sbjct: 459 DSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSYSKSN---PVMQENV 515

Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688
           + +    L R         ++ +   R  + + L    P L+VLS+ EL     I     
Sbjct: 516 IRRVDSLLERSVFKDFR-AIVTSCETRFEMKKMLDPHFPDLLVLSHDELPKEIPISFLGI 574

Query: 689 IGGK 692
           +  +
Sbjct: 575 VSDE 578


>UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9
           Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO
          Length = 634

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 125/350 (35%), Positives = 206/350 (58%), Gaps = 13/350 (3%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           + A LRL ++LK  +  +L  P  +L   L+ +++++ LP  ++D     +   S ++L+
Sbjct: 1   MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           + +     L+    PT++L  T  RL L++A+TR I+          G+V+E  G F++G
Sbjct: 60  IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGQVIETVGQFVMG 114

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GN   G+++F+I+ I+ F+V+TKG  R+AEVGARF LD +PGKQM ID DL +GLI  ++
Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           A+K R+++  E   +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q  +S+  +  
Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298
            +++LT+GDGLV+QIP+L++S A GV +TR+    D     + QL +       S     
Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294

Query: 299 LGLLGLVPGMPNLVFLLFTAGLL--GLAWWIRGREQKAPAEPKPVKMAEN 346
           + ++ L    PNL+++     +L  GLA W+  ++    A          
Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHG 344



 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 91/212 (42%), Gaps = 9/212 (4%)

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           + ++ +   +++ I     E +  Q +  ++  +AQ+  ++ +  +   V L  +H VL+
Sbjct: 427 DVASNLNNIISYFIHHRFIEKYNLQYSNNIVAGLAQQ-SEIMKSEIDSAVGLNRVHDVLK 485

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            ++       D  +  E L   + ++SDP      +R      IT      + +V+V+ L
Sbjct: 486 QMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQEGKVNVVLL 545

Query: 603 DTPLERLLLQALQGGGGLEPGLADRLLAQ---TQEALSR-QEMLGAPPVLLVNHALRPLL 658
                  L + + G    E    DRL+A     +  + R     G  PV++VN     ++
Sbjct: 546 TPE----LTEEISGFVAGEFDDVDRLIAVQTGLRNEIKRLLVQYGVKPVVVVNENELNVV 601

Query: 659 SRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
             F ++ +  ++V S+ ++ ++  I  + TI 
Sbjct: 602 KAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633


>UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella
           melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME
          Length = 512

 Score =  336 bits (862), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 12/394 (3%)

Query: 307 GMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363
           G+P   F L    +  +       + R+++A A     K  E       +       + +
Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
            + +G +L   +   Q+ EL  R+  +R+KFAQE GF+ P + + D++ L P  YRI + 
Sbjct: 181 ELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIH 239

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           G  + S +   G  L +       ++PGE   +PAFG+ A  +        + +GY  V+
Sbjct: 240 GTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVD 299

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
             +V+ THL+ ++  + A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  VL+ 
Sbjct: 300 NLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKL 359

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LL E++ IR++  ILE +AE AP+   P  +   VR+ + + I          ++V+ L 
Sbjct: 360 LLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLG 418

Query: 604 TPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
              + +  Q+L+           ++P L ++   +   A+ +    G   VL+ +   RP
Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 478

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +   + R    L VLS++E++    ++    I 
Sbjct: 479 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 512


>UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645
           RepID=A3ZLT3_9PLAN
          Length = 489

 Score =  325 bits (835), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 109/348 (31%), Positives = 172/348 (49%), Gaps = 2/348 (0%)

Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396
                K+  +       W      D L +EVG  LI +V   +  +   R+ ++R + A 
Sbjct: 97  AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIVAP-ESKDFFDRMTAVRCQLAD 155

Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456
            +G + P + +RDN  L    YRIL+   E+      PG+++A++ GTA  TL G   VD
Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215

Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
           P FG   IWI +  + +A+  GY V+E S ++ THL   + +H+ E+    + ++L++  
Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
             +     E+L    ++L+T+H VL  LL+E V I++   +LETL  H     D   L A
Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635
            VRV LGR I Q++      VH IGL+  LE  LL+    G G +     +RL+    ++
Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395

Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
             + E    P  L+ +  LR  L R +   LP++ VLS  E+  N  I
Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443


>UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria
           MEX-5 RepID=B1TCM3_9BURK
          Length = 349

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 172/313 (54%), Gaps = 5/313 (1%)

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
              RI + R ++A E GF+ P V  RD+  L P  Y++ + G   G    YPGR LAI+P
Sbjct: 17  FAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLAIHP 76

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
               G LPG AT +PAFGL A+WI+   +++A+  G+T V+  T + TH+  LI  HAA 
Sbjct: 77  AGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTHAAR 136

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
           LFGR E   LLD V    P L +++VP V+ +  + +VLQ LL E+VPIRD+  I++TLA
Sbjct: 137 LFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQTLA 196

Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG--- 619
           + A  + DP  L   VR  LG AI Q+    +D + V+ LD  LE  + + L G  G   
Sbjct: 197 DVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADGHGT 256

Query: 620 --LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677
             L+P LA+  L +           G  P LL    +R  L  F RR  P+LVVLS  E+
Sbjct: 257 HVLDPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRRALKTFSRRVAPRLVVLSINEV 316

Query: 678 SDNRHIRMTATIG 690
            D   +R  AT+G
Sbjct: 317 PDAIPLRAFATVG 329


>UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6G3X4_9DELT
          Length = 602

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 169/640 (26%), Positives = 286/640 (44%), Gaps = 105/640 (16%)

Query: 54  LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113
            +++VL+  +  +R L+FAAFP +LL  T  RL LNV++TR+IL +     A AG+V++A
Sbjct: 37  CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91

Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173
           F   +V G+  +G V+F ++  I ++VI +GA R+AEV ARF LD +PG+Q+AID +   
Sbjct: 92  FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151

Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233
           G IG DEA+ RR+E+ + ADF+G MDG  + V+GDA+ G++I  IN+VGG  +G+ Q G 
Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GA 210

Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293
            +  +   Y  L +GDGL+AQ+PA++++ AA ++V+RV          +      P ++L
Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353
             A +L +L  VPGMP L F     GLL +A ++      A     P             
Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKKLASPE------------ 317

Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
                    L + V   L P +    +G L     ++R++ +  +    P + +    +L
Sbjct: 318 --------PLRVGVPASLRPELREDLEGAL----PALRQRCSATLNLPFPPLVLELRPEL 365

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
                 + ++   +                    T+   A  DP       W+ +     
Sbjct: 366 PERSLALDLEDRSLAR-----------------ETIEASAADDPD-----AWLLAGF--- 400

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
                               H +++ A+ L      +  ++R  +  P +    +    +
Sbjct: 401 --------------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAES 440

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAE----HAPIQSDPHELTAVVRVALGRAITQQ 589
           +  LH + +  + E+VP+  +  +L  LAE    H P +        + R AL     ++
Sbjct: 441 IDLLH-IARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497

Query: 590 WFPG------KDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSR 638
              G         +        LE LL+   + G       L P    R+LA+ Q     
Sbjct: 498 LHAGVCELGDPRWLRA---SPDLEDLLVARWEPGANRPRVHLSPKERQRVLARVQGE--- 551

Query: 639 QEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
                 P ++L +   RP L+  +    P + V +  EL+
Sbjct: 552 -----GPAIVLCSARARPALAALMTGLRPHVPVFALGELA 586


>UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P6_DESVU
          Length = 298

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 10/298 (3%)

Query: 400 FLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF 459
              P +++R N  L    Y + +  + +  G    G  L  +       + G A  +   
Sbjct: 1   MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLA-MMGVAVREGER 59

Query: 460 GLN---AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
            L     +W+        +  G   +  + ++A HL+ ++S+HA+   G QEA+ LLDR+
Sbjct: 60  FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
            +  P L  ++   ++ +  + ++ Q L+ E+V IRD+R+ILE L E +  + D   LT 
Sbjct: 120 EERAPDLVREVT-RLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTE 178

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631
            VR AL R I+     G++ +  I LD  +E  + +A++         LEP + +R +  
Sbjct: 179 YVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVTERFMKA 238

Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +A          PV++ +  +R  + R +      L V+S  EL+    ++    I
Sbjct: 239 VADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVNRI 296


>UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis
           RepID=Q1CE51_YERPN
          Length = 348

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 11/311 (3%)

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
           L   I  +R ++ + +G   P V IR +  L      + +    +      P   L   P
Sbjct: 34  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP 93

Query: 443 GTAAGTLPGEATVDPAFGLNA---IWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
            ++        T +   G       W+++    QA+  G   VE    + T L  +  ++
Sbjct: 94  CSSLV------TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERY 147

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
            AE  G QE + L+D +     +L ++L    + +  + ++LQ L++E + IRD+RTI  
Sbjct: 148 TAEFIGVQETRYLMDAMEGRYGELVKEL-QRQIPVGKVAEILQRLVEENISIRDLRTIFG 206

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL-QGGG 618
            L   AP + D   LT  VR+AL R + +++   K  + V+ L   +E L+  ++ Q   
Sbjct: 207 ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSS 266

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
           G    L +R        +          VLL    +R  + + + R L  L VLS  EL 
Sbjct: 267 GTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELG 326

Query: 679 DNRHIRMTATI 689
           D  ++++  TI
Sbjct: 327 DEMNLKVAGTI 337


>UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of
           Sitophilus zeamais RepID=Q8GAT5_9ENTR
          Length = 340

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 13/346 (3%)

Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224
           M+IDADL AG++ ED  KKRR  +  E+  YG++DGA KF++GDAIAGI+I+ +N++GG+
Sbjct: 1   MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60

Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282
            VG++QHGM +  A   YT L+IGD LVAQIPAL+IS + G IVTRV  + + ++G +++
Sbjct: 61  SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--WIRGREQKAPAEPKP 340
             LF+N S ++++A +   +G +PG P  VF++ +A L+ + +    R R +    E   
Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180

Query: 341 VKMAENNTVVEATWND---VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397
            K A++    EA   D   +     L +       P ++             ++K F  E
Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKPKLEQHNLA------SRLKKTFFIE 234

Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457
            G   P + I        A   I +  + +      PG    +  G     L        
Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294

Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
                + W+     + A   GY    A       ++ L++ + +E 
Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340


>UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3
           Tax=Salmonella enterica subsp. enterica serovar Typhi
           RepID=UPI000190D087
          Length = 290

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL--GR 386
            R    P   K  +         ++   +   D +  E    LI +V   +  +L     
Sbjct: 1   KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLILLVPKSRREDLEKAQL 59

Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446
              +R +F  + G   P V +RD   L      +L+  + +     Y      +N     
Sbjct: 60  AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119

Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506
            +     T+         W+     E+ +  GY +  A   +   L   ++++  E FG 
Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179

Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566
           QE + +LD++  + P L ++++    T+  + +VLQ LL E+V +R+M+ I+E LA  AP
Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAP 238

Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
            + D   L   +R A+ R I  ++  G  E+  + +   +E ++ + ++   G
Sbjct: 239 REKDVINLVEHIRGAMARYICHKFANG-GELRAVMVSAEVEDVIRKGIRQTSG 290


>UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU
          Length = 223

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 10/216 (4%)

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           VE   +    L+ L++ H  +L  R+   Q+L   ++  PKL E+LVPGV++L+ L KVL
Sbjct: 8   VEPDALAQLPLDELVACHECDLLLRKPVLQVL---SKASPKLAEELVPGVISLSGLLKVL 64

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q LL E+VP+RD+R+I E +A +A    D   L AVVRV L RAI Q     + E+ VI 
Sbjct: 65  QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124

Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           L+  LE++LL +LQ  G        LEP +A++L     EA  RQEM G P +LLV   +
Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R +LSRF R ++P L VL+  E+ DN+ + + AT+G
Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220


>UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1
           Tax=Sordaria macrospora RepID=D1ZYL5_SORMA
          Length = 168

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 11/172 (6%)

Query: 233 MSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVM 292
           M    A   +TLLTIGDG+  Q+PAL+IS A G+IVTR ++D+++  ++  QL S P + 
Sbjct: 1   MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60

Query: 293 LLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA 352
           L+ AAVL  L L+PGMP    ++   G +    W R R+  A A  +PV          +
Sbjct: 61  LIVAAVLAALLLLPGMPKWPIVVI--GTIAFVAWRRIRKAAAEAAAEPVDEEVAAESTAS 118

Query: 353 TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV 404
                     L + +G  L       +   ++ RI  +R+   ++ G   P 
Sbjct: 119 P--------PLEIRLGEALSG-AWAGEGALVMDRIAGLRRVHEEQFGLPFPP 161


>UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar
           Gallinarum RepID=Q58FD6_SALGL
          Length = 132

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293
             A  +Y++L+IGDGL  QIP+L+IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++
Sbjct: 1   SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353
           L+A VL LL L+PG P +    F+A L      I  R +K+      V+  E +++V   
Sbjct: 61  LTAVVLMLLALIPGFPFITLAFFSALLA--LPIILIRRKKSVVSANGVEAPEKDSMVPGA 118

Query: 354 WNDVQLEDS 362
              +     
Sbjct: 119 CPLILRLSP 127


>UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum
           EbN1 RepID=Q5P877_AZOSE
          Length = 206

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 67/108 (62%), Positives = 87/108 (80%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +   L L A +     ++L  P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVAM
Sbjct: 1   MFEALNLRALMAPANLRMLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVAM 60

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111
           +T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG  AAGKV+
Sbjct: 61  YTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108



 Score = 78.7 bits (193), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 4/98 (4%)

Query: 598 HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653
            V+ LD  LER+L QA+  GGG    +EP LAD LL    E   RQE +G PPVLLV   
Sbjct: 106 KVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAEVAQRQEDIGLPPVLLVPPQ 165

Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           LR LLSRFLRR++P L V++N E+ + R IR+TA +GG
Sbjct: 166 LRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203


>UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter
           sp. MED105 RepID=A6GSW7_9BURK
          Length = 106

 Score = 92.6 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 4/100 (4%)

Query: 597 VHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           ++V+ ++  LE+++  A     Q   G++P LA+ L  QT +A  RQE LG  PVLLV  
Sbjct: 6   LNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLVPD 65

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
           ALR  ++R L+R+ P L VLS+ E+ +NR IR+   +G K
Sbjct: 66  ALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105


>UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1
           Tax=Sordaria macrospora RepID=D1ZYM6_SORMA
          Length = 102

 Score = 85.6 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 436 RWLAINPGTAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
             LA++ G A G  L G+   DP FGL+AIWI+    + A   GY VV+A TV+ATHLNH
Sbjct: 6   EMLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNH 65

Query: 495 LISQHAAELFGRQEAQQLLDRVAQ 518
           +++ +A EL G  E Q LLD +  
Sbjct: 66  VLTVNATELLGPDEVQALLDGLKA 89


>UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria
          RepID=C0AUZ1_9ENTR
          Length = 111

 Score = 82.9 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 66/78 (84%), Positives = 74/78 (94%)

Query: 1  MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
          M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL
Sbjct: 1  MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60

Query: 61 VAMFTQRTLEFAAFPTIL 78
          VAMFT+RTL+FAAFPTI 
Sbjct: 61 VAMFTKRTLDFAAFPTIF 78


>UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KQE5_CLOPH
          Length = 266

 Score = 81.4 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 48/217 (22%)

Query: 359 LEDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
           L + + ++VG   +  ++   Q G    +++ +R   A+E G+L P V I D++ L    
Sbjct: 88  LSEPITLKVGCGFVDYLMKENQQG--FPKLQQVRINMAKESGYLLPTVRILDDITLDNHC 145

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
           ++I            +  + +         +       +                     
Sbjct: 146 FQI-----------LFYDKVVYEQNNLNPSSSEYPEIFE--------------------- 173

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
                         LN   + H  +L  RQ  + L+D +++  P L +  +P  ++   +
Sbjct: 174 -------------QLNLTCTAHYEKLLHRQIVKDLIDNLSKLYPVLVDGYIPDKLSYAQI 220

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574
             VL++L++ K  IR++  I+E L ++  +  D   +
Sbjct: 221 QFVLKSLIEHKKSIRNLCEIIEYLEDNLVLGKDLVSI 257


>UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori
           HPKX_438_CA4C1 RepID=UPI000185465C
          Length = 72

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328
           T  + ++D   +++ QL +    +++  A+L L   +PG+P           L +AW I 
Sbjct: 3   TTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLIS 62

Query: 329 GREQK 333
              + 
Sbjct: 63  REGKD 67


>UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX
          Length = 63

 Score = 50.6 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 645 PPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
             VLLV   LR  L   LR     + VLS  E+S+   +++  
Sbjct: 4   QAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMG 46


>UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty RepID=UPI000190A6ED
          Length = 85

 Score = 47.5 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 41/78 (52%)

Query: 286 FSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345
            +NP V++++A +   +G +PG P  VF++ +  L  L ++     +++ A+PK  K  +
Sbjct: 1   MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ 60

Query: 346 NNTVVEATWNDVQLEDSL 363
             ++ E   + + L   L
Sbjct: 61  PLSIEEKEGSSLGLIGDL 78


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac...   810   0.0  
UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri...   804   0.0  
UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce...   803   0.0  
UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm...   800   0.0  
UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac...   800   0.0  
UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del...   797   0.0  
UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic...   786   0.0  
UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2...   785   0.0  
UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep...   785   0.0  
UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   783   0.0  
UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod...   782   0.0  
UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam...   781   0.0  
UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni...   779   0.0  
UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact...   775   0.0  
UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir...   774   0.0  
UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente...   764   0.0  
UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact...   763   0.0  
UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo...   763   0.0  
UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact...   762   0.0  
UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n...   760   0.0  
UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot...   759   0.0  
UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-...   758   0.0  
UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact...   757   0.0  
UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan...   755   0.0  
UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac...   752   0.0  
UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir...   752   0.0  
UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui...   743   0.0  
UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The...   740   0.0  
UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm...   738   0.0  
UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr...   737   0.0  
UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo...   737   0.0  
UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr...   736   0.0  
UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps...   735   0.0  
UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali...   733   0.0  
UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid...   731   0.0  
UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib...   730   0.0  
UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp...   730   0.0  
UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp...   725   0.0  
UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto...   724   0.0  
UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet...   723   0.0  
UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel...   723   0.0  
UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap...   718   0.0  
UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther...   718   0.0  
UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac...   717   0.0  
UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi...   715   0.0  
UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta...   713   0.0  
UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam...   708   0.0  
UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n...   703   0.0  
UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   700   0.0  
UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid...   697   0.0  
UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae...   694   0.0  
UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n...   691   0.0  
UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T...   688   0.0  
UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax...   685   0.0  
UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor...   684   0.0  
UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt...   684   0.0  
UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O...   682   0.0  
UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot...   679   0.0  
UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact...   679   0.0  
UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=...   678   0.0  
UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco...   677   0.0  
UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys...   676   0.0  
UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu...   670   0.0  
UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep...   670   0.0  
UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA...   669   0.0  
UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho...   666   0.0  
UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den...   665   0.0  
UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz...   662   0.0  
UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=...   662   0.0  
UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein...   656   0.0  
UniRef50_Q057S2 Type III protein export, membrane component n=1 ...   655   0.0  
UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI...   654   0.0  
UniRef50_P35656 Hypersensitivity response secretion protein hrcV...   653   0.0  
UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G...   648   0.0  
UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s...   648   0.0  
UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus...   646   0.0  
UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero...   646   0.0  
UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8...   639   0.0  
UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco...   638   0.0  
UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax...   632   e-179
UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax...   624   e-177
UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp...   622   e-176
UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ...   618   e-175
UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6   618   e-175
UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea...   609   e-172
UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr...   597   e-169
UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta...   592   e-167
UniRef50_B9JJ70 Type III secretory system inner memberane protei...   592   e-167
UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2...   582   e-164
UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh...   578   e-163
UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho...   576   e-162
UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax...   560   e-158
UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob...   556   e-156
UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho...   497   e-139
UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH               480   e-133
UniRef50_D0I6B6 Type III secretion inner membrane channel protei...   456   e-127
UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil...   429   e-118
UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax...   419   e-115
UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf...   408   e-112
UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell...   371   e-101
UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n...   352   2e-95
UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples...   339   2e-91
UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell...   328   5e-88
UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho...   312   2e-83
UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo...   280   1e-73
UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf...   280   1e-73
UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi...   270   1e-70
UniRef50_UPI000190D087 possible secretory protein (associated wi...   232   4e-59
UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID...   181   6e-44
UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4...   129   5e-28
UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs...   114   9e-24
UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl...   106   4e-21
UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom...   104   1e-20
UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n...    88   1e-15
UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4...    82   8e-14
UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteri...    73   4e-11
UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T...    61   1e-07
UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ...    56   5e-06
UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re...    51   1e-04

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria
           RepID=A0LC38_MAGSM
          Length = 708

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/695 (46%), Positives = 467/695 (67%), Gaps = 10/695 (1%)

Query: 5   AAMLRLPANLK---STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
            A + LP  L+     ++  L   + +++++++M++PLP+ +LD   + NIA++I++LL 
Sbjct: 11  LAAIGLPLKLQGISLKKYSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLT 70

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            ++  + L+F++FP++LL  T+ RLALN+A+TR+IL+ G  G +AAG+V+ AFG F+VGG
Sbjct: 71  TIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILLHGGEGESAAGEVIRAFGQFVVGG 130

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N+ +G+++F ILVIINF+VITKGAGRIAEV ARF LD MPGKQMAIDADLN+GLI EDEA
Sbjct: 131 NYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEA 190

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           ++RRSE+ QE++F+G+MDGASKFVRGDAIAGILI +INIV G ++GV Q  +S   +A+ 
Sbjct: 191 RRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQI 250

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301
           YT+LT+GDGLVAQIP LVIS  AG +VTR S D ++ + +  Q+ + P V+L+SA VLGL
Sbjct: 251 YTILTVGDGLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGL 310

Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGR--EQKAPAEPKPVKMAENNTVVEATWNDVQL 359
           L ++PGMP + F L    +   +W++  R  ++    + K +  AE     E        
Sbjct: 311 LAIIPGMPTVAFGLLAIAMGSWSWYLFRRAEQRDEAVQHKAMAEAEAEAEAEEPIESYLA 370

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
            D L ++VGY LI +VD  Q G+LL +IRSIR++FAQ+MGF+ P +HI+DN+ L+P  Y 
Sbjct: 371 LDLLRLDVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYS 430

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
            L+KGVE+G G+  PG +LA+  G   G + G ATV+PAFGL A WI S  +E+A++ GY
Sbjct: 431 YLVKGVEVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGY 490

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
           TVV+ASTV+ATH+  ++  HA E+  RQE Q LLD V++  PKL E+L+P +V+L  + K
Sbjct: 491 TVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQK 550

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VLQ LL E+V IRDM TILETLA++  I   P +L  +VR +L R+I +++   +  +  
Sbjct: 551 VLQGLLRERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTA 610

Query: 600 IGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           + L    E L+ +A+  G       L P  A +LL + +  + +   +   PVL+    +
Sbjct: 611 LVLGPDAENLVAEAIVSGDYGSYLSLSPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRV 670

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           RP + + L   LP LVVLS  E+  N  +    +I
Sbjct: 671 RPFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705


>UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia
           RepID=C4ZAM7_EUBR3
          Length = 680

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 251/683 (36%), Positives = 411/683 (60%), Gaps = 14/683 (2%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + +L  +   ++P+P+F+LD++  FN+++++++L   +F +  L+ + FPT+
Sbjct: 3   KKTDLGVGLYLLCAVLFFIIPIPSFLLDVMLAFNLSIALIILFKVLFVKEVLDMSFFPTL 62

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LLFTT+ R++LNV+STR+IL  G+      G VV  FG F+ GGN  IG +VF++L+II 
Sbjct: 63  LLFTTIFRISLNVSSTRLILSTGNP-----GVVVNVFGQFVGGGNLVIGAIVFIVLIIIQ 117

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VI KG+ R+AEV ARF LD MPGKQMAIDADLN G I + EAK RR ++ +E+ FYG+
Sbjct: 118 FVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQKESSFYGA 177

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA+K+V+GDA AGI+I +IN+VGG ++GV+  G+ +  A + + LLTIGDGLV+QIP+
Sbjct: 178 MDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGDGLVSQIPS 237

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IS + G++VT+ S + D   +++ QLF    V+ + + VL +LG++  + N  +L   
Sbjct: 238 LLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLRNEWWLFIG 297

Query: 318 AGLLGL--AWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIP 373
             +        +  +      E +  +   +   +    N V     D + +E GY +IP
Sbjct: 298 LAVAFFVTGKNLDKKAGIESIEDETAQAESDAEEIRKPENVVSLLQVDPIELEFGYGIIP 357

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           + D  Q G+LL R+  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+  
Sbjct: 358 LADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIKGIQVTEGEIL 417

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
              ++A+NPG     + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL 
Sbjct: 418 FDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLT 477

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            +I  H AEL  RQ+ Q L++ + +  P + ++L+P ++ L  + KVLQNLL E + IRD
Sbjct: 478 EVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQNLLSEGISIRD 537

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           + TI ETLA+HA    D   LT  VR  L RAI+ ++FP  +   VI LD  +E+ ++ +
Sbjct: 538 LLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLDPAVEQEIMSS 597

Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           ++         L+P     ++   +  + + E LG   +++ +  +R    +        
Sbjct: 598 VKQTEQGSYLSLDPDRIKAIIKSVETEIGKLESLGKSAIIITSPIVRMYFKKMTEDYFKD 657

Query: 669 LVVLSNLELSDNRHIRMTATIGG 691
           L+VLS  E+  N  ++    +  
Sbjct: 658 LIVLSYNEVESNVELQSVGMVTA 680


>UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms
           RepID=FLHA_BUCAI
          Length = 696

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/695 (62%), Positives = 554/695 (79%), Gaps = 4/695 (0%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M N +++LR+  +LK+TQWQILAGPILIL+ILSMMVLPL  F+LD+ FTFNIALSI++LL
Sbjct: 1   MINFSSLLRIVKSLKTTQWQILAGPILILMILSMMVLPLAPFVLDVFFTFNIALSIIILL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           V+MFT+ TLEF AFPTILLF+TLLRLALNVASTR+I + GHTG  +AG+V+E+FGHFLVG
Sbjct: 61  VSMFTRHTLEFTAFPTILLFSTLLRLALNVASTRVIFLRGHTGTNSAGRVIESFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNFAIGIVVF+ILVIINF+VITKGA RIAEVGARF+LD MPGKQMAIDADLNAGLIGE++
Sbjct: 121 GNFAIGIVVFIILVIINFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEK 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR ++TQEADFYGSMDGASKFVRGDAIAGILIMVINI GGL++G++QH M +  A E
Sbjct: 181 AKKRRIKITQEADFYGSMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVE 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YTLLTIGDGLVAQIPALVISTAAGVIVTRVS++Q+VGEQM +QLF NP V+LLSA VLG
Sbjct: 241 VYTLLTIGDGLVAQIPALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---QKAPAEPKPVKMAENNTVVEATWNDV 357
           +LGLVPGMPN++FL+FT  L  L+WW+  ++   +    +        ++ + EA+WNDV
Sbjct: 301 VLGLVPGMPNIIFLVFTVLLFILSWWLYEKKYDLENDFIKSNKKYKFIHDAISEASWNDV 360

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
           +LED + +E+GY+L PM D  + G+LL RIR +RKK AQE+GFLPP+V I++NM L    
Sbjct: 361 ELEDPIRIEIGYKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNS 420

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
           YRI +KGVE+G G  + GR++AI+ G    +LP E   +P FGL+  WI+   K +AQ +
Sbjct: 421 YRIFIKGVEVGQGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKK 480

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
           GY+V+E+S V++THLN LI+ H  +LFGRQEAQQLL+RV  + PKLTEDL+P  + LT  
Sbjct: 481 GYSVIESSVVLSTHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIF 540

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597
           HK+L+NLL E VPIRDMRTILETL+EHA  Q DP+ELT++VR+AL + I Q+ F   + +
Sbjct: 541 HKILRNLLLEHVPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNII 600

Query: 598 HVIGLDTPLERLLLQALQ-GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
            +IGL+  LERLLL +L+ G   +EP L++ LL QT+EA+ +Q ++G+P VLLV H+LR 
Sbjct: 601 EIIGLEPNLERLLLNSLKSGTDTIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRY 660

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
            LS+FLR++ P+L VLS  E+ D + I+MT  IG 
Sbjct: 661 FLSKFLRQNFPELTVLSQFEIIDVKEIKMTNIIGT 695


>UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes
           RepID=Q5WFS0_BACSK
          Length = 678

 Score =  800 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/682 (40%), Positives = 429/682 (62%), Gaps = 12/682 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           + + L     ++LI+ M+++PLP F+LD+L  FNI+LS+++LLVA+ T+  L+F+ FPT+
Sbjct: 2   KARDLTVLAGVILIIVMLIIPLPPFLLDVLIIFNISLSLLILLVAISTKDALDFSIFPTM 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RL L+V++TR IL     G A AG V++ FG F++GGN  +G +VF+IL++I 
Sbjct: 62  LLLVTLFRLGLSVSTTRSIL-----GNAEAGNVIDTFGSFVIGGNAVVGFIVFLILIVIQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGA R++EVGARF LD MPGKQM+IDADLNAGLI + EAK+RR ++  EADFYGS
Sbjct: 117 FIVITKGAERVSEVGARFTLDAMPGKQMSIDADLNAGLISDREAKQRREKIEHEADFYGS 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIA I+I++IN++GGL++G++Q GM M  AA +YTLLT+GDGLV QIPA
Sbjct: 177 MDGASKFVKGDAIASIIIVIINMLGGLMIGMMQMGMDMNTAASTYTLLTVGDGLVTQIPA 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+ISTA GVIVT+ +++ ++   +  Q+ + P ++ ++AA + LLGL   +  +V     
Sbjct: 237 LLISTATGVIVTKAASEGNLSTDLSRQILAYPKLLYVTAATILLLGLATPITKVVTFSIA 296

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375
             L    + +           + +             + V     D +  E GY LIP+ 
Sbjct: 297 GLLAFAGYRLSKASLAKANFEEALLEEAPPEEPSGPESVVQLLQMDPIEFEFGYGLIPLA 356

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL R+  IRK+ A E+G + PV+ IRDN+ L+P  Y I +KG  +  G+    
Sbjct: 357 DANQGGDLLDRVVMIRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGAVVAKGEVLLD 416

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            ++A++ G    ++ G  T++PAFGL A+W++  ++++A++ GYTVV+  TV++THL  +
Sbjct: 417 HYMAMSTGEQDDSIVGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPPTVISTHLTEV 476

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           +  HA EL GR+E +QL+D + +  P L E++ P  +T   + KVL+NLL E++ IR++ 
Sbjct: 477 LKAHAYELLGREETKQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLLREQLSIRNLP 536

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
            I E LA++ P+  D + +T  VR AL R IT Q   G +E+ VI L   +E+ +  A+ 
Sbjct: 537 VIFEALADYGPLTKDMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAAVEKKIADAIG 596

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    L P  +  +L  T + + +   LG   V+L + A+R  + + + R LP + 
Sbjct: 597 QNENGSFLALAPADSQAILQNTAKEVQKVAELGRQAVILCSPAVRMHMRQLIERHLPYVP 656

Query: 671 VLSNLELSDNRHIRMTATIGGK 692
           V+S  EL  +  ++    +  +
Sbjct: 657 VVSYNELEPDVEVQSVGVVNAE 678


>UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria
           RepID=D1B6A5_THEAS
          Length = 697

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/694 (42%), Positives = 434/694 (62%), Gaps = 26/694 (3%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K  ++  +   +L++LI+ MM++PLP ++LD+L   NI   +++LL   + ++ LE AAF
Sbjct: 10  KVLRYADVGMAVLLVLIVGMMIIPLPTWLLDVLLALNITFGVVILLSTFYVKQALEIAAF 69

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           PTILL  TL RLALNV++TR++L+ G+     AG+++ AFG+F+VGGN+ +G VVF+ILV
Sbjct: 70  PTILLMATLFRLALNVSTTRLVLLNGY-----AGEIINAFGNFVVGGNYVVGGVVFLILV 124

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           II F+VITKGA R+AEV ARF LD MPGKQMAIDADLNAG+I E EA+KRR+ V +EADF
Sbjct: 125 IIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQREADF 184

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGASKFV+GDAIAG++I  INI+GGL +GVLQ GM +  A  +Y+LLT+GDGLVAQ
Sbjct: 185 YGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGDGLVAQ 244

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IPAL++STA G+IVTR + + D+G  MV  +  N   + + + +L  L +VPG+P + F 
Sbjct: 245 IPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLPTIPFA 304

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT-------------VVEATWNDVQLED 361
           L  + +  +A+ I+    +A       + +                         +   D
Sbjct: 305 LLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLPLLTVD 364

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            + +E+GY LIP+VD  Q G++L RI +IR++ A ++G + P + IRDN+ L+P  Y I 
Sbjct: 365 PMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPTEYVIR 424

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           +KG E+G G+  P  +LA++ G     L G  T +PAFGL A+WI   +++QA+  GYTV
Sbjct: 425 VKGAEVGRGELLPDHYLAMSTGGE-DLLVGIPTKEPAFGLPALWISPEIRDQAEGLGYTV 483

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           V+  +V+ATHL+ +I ++ A+L  RQE Q+L+D VA+  P +T+DL+  V++L  + KVL
Sbjct: 484 VDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLL-DVLSLADVQKVL 542

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q L+ E+V IRD+ T+ ETLA+H      P  L   VR AL R IT +       + V  
Sbjct: 543 QGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVLGVYT 602

Query: 602 LDTPLERLLLQALQGG------GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
           L    E+ + + ++G         + P     L+     A     M G  PVLL +  +R
Sbjct: 603 LSPRWEQRIKECIKGDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPVLLTHPDVR 662

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            ++ R +  SLPQL V+S  E++ +  +R    +
Sbjct: 663 LVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696


>UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria
           RepID=A1V9R4_DESVV
          Length = 703

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/686 (44%), Positives = 435/686 (63%), Gaps = 11/686 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  +   +     ++ IL +M++PLP F LD+L   +I+LS+++L+ +MF    LEF+ F
Sbjct: 15  RFAKQGDILLAGGVVTILFVMLVPLPTFFLDILLCCSISLSLVILVTSMFMMSPLEFSIF 74

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTLLRLALNVASTR+IL+ G  G  AAG+V+ AFG F+VGG++ IG V+F+IL 
Sbjct: 75  PSLLLVTTLLRLALNVASTRLILLHGDEGTDAAGEVIRAFGEFVVGGSYVIGAVIFMILF 134

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+N  VIT G  RIAEV ARF LD MPGKQMAI+ADLNAGLI E EA +RR  + +EADF
Sbjct: 135 ILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIRKEADF 194

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV GD  AG+ I +INI+GGLLVG++Q  M    A  +YTLLT+GDGLV+ 
Sbjct: 195 YGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGDGLVST 254

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IP++++STAAG+IV+R +++  +GE+ + QL  N   M L + VL L  LVPG+P + FL
Sbjct: 255 IPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLPTVPFL 314

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND------VQLEDSLGMEVG 368
           +F+A L   A  +  R+             +       + +       +   D+L +EVG
Sbjct: 315 IFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDALELEVG 374

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y LIP+VD +Q+G LL RIRSIR++FA +MG + P +H+RDN+ L+P +Y +L+KG ++ 
Sbjct: 375 YGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIKGNQVA 434

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
           S +      LA++PGTA   + G  T +PAF L A+WI  + KE+A + GYTVV+ STV+
Sbjct: 435 SAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVDPSTVI 494

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATHL  +  +H +E  GRQE Q LLD +++  PK  E+LVPGV++L  + KVLQNL+ E 
Sbjct: 495 ATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQNLVREN 554

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           V +RD+ +++ETLA++ P   +P  LT  VR  L R+I +     +  + +I LD  +ER
Sbjct: 555 VSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLDANVER 614

Query: 609 LLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
            L  +++   G     L P  A RL+      +         PV+L     RP L++ L 
Sbjct: 615 TLQDSIRQTEGGAYLALNPSTAQRLIQSVNTQVENAVGTDGQPVVLTQPGTRPHLAQLLM 674

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATI 689
           R LP + VLS  E+  +  ++    +
Sbjct: 675 RFLPNIPVLSQAEIPPDIRLQAVGNV 700


>UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWG6_ALIAD
          Length = 682

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/683 (41%), Positives = 429/683 (62%), Gaps = 12/683 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             +   L   + +L  + M+V+P+P  +LD+L  FN+ +S+ +LLVAM T   LEF+ FP
Sbjct: 4   WLKRTDLMVMLFVLWTIVMIVIPIPRPLLDVLILFNMFVSMTILLVAMNTSEPLEFSIFP 63

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           ++LL TTL RL+LN+++TR+IL +G+     AG V++ FG+F++G N  +G +VF+I++I
Sbjct: 64  SLLLVTTLYRLSLNISTTRLILSQGN-----AGAVIQTFGNFVIGNNPVVGFIVFLIIII 118

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           + ++VIT+GA R+AEV ARF LD MPGKQ+AIDADLNAGLI E EA++RR ++ QEADFY
Sbjct: 119 VQYVVITRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFY 178

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFV+GDAIA ++I+ IN+V GL++GV     S   A  +YT+L++GDGLV+QI
Sbjct: 179 GAMDGASKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQI 238

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PAL++STA G++V+R +TDQ++G  +V Q+F     + + +  + LLGL+  +  L  + 
Sbjct: 239 PALLLSTATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIP 298

Query: 316 FTAGLLGLAWW--IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373
              G   +A         Q+   E +  +   +          +   + +  E GY LIP
Sbjct: 299 IAGGATLMARRAERSRALQQKREEEEKARQKRSEAKKPENVYQLITVEPVEFEFGYGLIP 358

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           +VD +Q G+ + R+  IR++ A ++G + P+V +RDN+ L+P +Y I +KGVE+  G+  
Sbjct: 359 LVDARQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEIL 418

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
            G WLA++PG     + G  T DP FGL A+W+   +K +A+  GYTVV+  +V+ATHL 
Sbjct: 419 MGHWLALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLT 478

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            ++ +HA EL GRQ+ ++LL+ + Q  P + ED+ PG ++L  + +VL NLL+E VPIRD
Sbjct: 479 EVLRRHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRD 538

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA 613
           + TILE LA+      D  +LT  VR  L R I  Q+  G+D + V+  D  LER + QA
Sbjct: 539 LVTILEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQA 598

Query: 614 LQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
           +   G     GLEP  A  +  + +E  +  +  G  PVLLV+  +R  LSR +RR +P 
Sbjct: 599 VVEQGGALSIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVPD 658

Query: 669 LVVLSNLELSDNRHIRMTATIGG 691
           L VLS  EL  +  I     +  
Sbjct: 659 LPVLSFAELDPSISIHSGGVVNV 681


>UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum
           RepID=B6AMB1_9BACT
          Length = 702

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/686 (43%), Positives = 428/686 (62%), Gaps = 11/686 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
                 +   + ++ IL +M++P+P  +LDL    NI  S+++LLVAM T+  LEF  FP
Sbjct: 17  LDSRSDILILVGVVGILFIMIVPMPPLLLDLFLATNITFSLVILLVAMTTKNLLEFTIFP 76

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           +ILL +TL RL+LNVASTR+IL+ G  G  AAG V+++FG F+VGG++A+G+V+F I V+
Sbjct: 77  SILLLSTLFRLSLNVASTRLILLHGQNGTGAAGHVIQSFGRFVVGGSYAVGLVLFAIFVV 136

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           INF+V+T+GAGRIAEV ARF LD +PGKQMAIDADLN+G I E+EA+KRR E+++E++FY
Sbjct: 137 INFVVVTRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFY 196

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFVRGDA+A ILI+ +NI+GGL++G++  G+ +  A  +YTLLTIG+GLVAQ+
Sbjct: 197 GAMDGASKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQL 256

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PAL++S AAG++VTR  +  D+G ++  Q+ + P  +  ++ +L LL ++PG+P+  F L
Sbjct: 257 PALIVSVAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFL 316

Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375
             +    +A+     E+K   E +  +                  D L + VGY L+ +V
Sbjct: 317 LASVTGLMAYRRTTLEKKKARELQAEEKTV--PPPAENVETYLSLDLLELNVGYGLVDLV 374

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           + +    L  RIR IR++ AQEMG + P +HIRDN+ L+P  Y +L+KG  +   +  P 
Sbjct: 375 EGKAGSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPD 434

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
             LA+NPG    T+ G    +P FGL A WI    +E+ + QG+TVV+  TV++THL  +
Sbjct: 435 SLLAMNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEV 494

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I  HAAEL GRQE Q+LLD + ++ P+L EDLVPG V+L  L  VL  LL E+V IRD+R
Sbjct: 495 IRSHAAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLR 554

Query: 556 TILETLAE---HAPIQSDPHELTAVVRVALGRAITQQWFPGK-DEVHVIGLDTPLERLLL 611
           TILE +++         D   L   VR ALGR+I   +  GK   + V+  D   E + +
Sbjct: 555 TILEAVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFM 614

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
           +            LEPGLA +LL+   + +      G  PVLLV+   R  + RFL R  
Sbjct: 615 KQASQTPPGSPLVLEPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLERYF 674

Query: 667 PQLVVLSNLELSDNRHIRMTATIGGK 692
             L VLS +E+  +  I     +  +
Sbjct: 675 SSLPVLSPMEVPKDVPIVSQEVVRFQ 700


>UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC
          Length = 691

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/686 (40%), Positives = 429/686 (62%), Gaps = 14/686 (2%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
                +   +     ++ I+ MM++PLP FILD+L   NI+LS+++LL+ +FT   L+ +
Sbjct: 3   KFNLKENMDVIVAFGVVGIVLMMIVPLPTFILDILLAINISLSVLILLMTLFTTNVLDLS 62

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FPT+LL TTL RL LN++STR+IL +G+     AG+V+EAFG F+VGGN+ +GI++F+I
Sbjct: 63  IFPTVLLVTTLFRLGLNLSSTRLILTQGY-----AGEVIEAFGSFVVGGNYVVGIIIFLI 117

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           ++I+ F+VIT G+GR++EV ARF LD MPGKQM+IDADLNAG+I +  A+KRR E+ QEA
Sbjct: 118 ILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEA 177

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYGSMDGA+KFV+GDAIAG+++  INI+GG+++G +   M++  AA++Y  LTIGDGLV
Sbjct: 178 DFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLV 237

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +QIPAL+IST+AG+IVTR STD++ G  +  QL + P  ++++  VL +LG++PG+P   
Sbjct: 238 SQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPA 297

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369
           F     G +   +++   ++    +    KP  +  +   VE   N +   +S+ +E+GY
Sbjct: 298 FFSLGIGAIAAGYFLGREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLI-NVESIEVEIGY 356

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
            LI + D    G+LL RI SIR++ A +MG +   + IRDN+ L P +Y I +KG  +G 
Sbjct: 357 GLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGG 416

Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489
            +  P   L ++P     ++ G  T++P FG+ A+WIES   E A+I+GYTVV++ST++ 
Sbjct: 417 YEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILI 476

Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549
           THL  +I  +A EL GRQE + ++D   +    + ++L+P ++TL  + KVL+NLL EKV
Sbjct: 477 THLLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKV 536

Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609
            I+D  TILETLA+ +    D   LT  VR+AL R+I          + V  L    E L
Sbjct: 537 NIKDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEEL 596

Query: 610 LLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRR 664
           +   LQ         ++P   +++    QE ++        PV++V+  +R    + +  
Sbjct: 597 VSNNLQRSVNGTYPAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEI 656

Query: 665 SLPQLVVLSNLELSDNRHIRMTATIG 690
             P L VLS  E+ ++  I+    + 
Sbjct: 657 VYPNLTVLSLNEIPNDIKIKAEGVVS 682


>UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=B8FTQ1_DESHD
          Length = 688

 Score =  783 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/691 (41%), Positives = 428/691 (61%), Gaps = 14/691 (2%)

Query: 8   LRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQR 67
           +    N +      +   I I+ I+ MMV+P+P  +LD+L T +I+ +++ L++++FT+ 
Sbjct: 1   MATNVNRRWYSNIDVLAAIFIVSIVVMMVVPIPPLMLDILLTISISAAVLTLMISVFTKD 60

Query: 68  TLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGI 127
            L+F+  P+++L  TL RL+LNV +TR+IL EGH     AG+V++ FG F+V G+  +G 
Sbjct: 61  PLDFSVLPSLILILTLFRLSLNVTTTRLILGEGH-----AGEVIQQFGEFVVKGSAVVGF 115

Query: 128 VVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSE 187
           ++F ILV++NF+VITKG+ R++EVGARF LD MPGKQM+IDADLNAG+I E +A+ RR +
Sbjct: 116 IIFAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQK 175

Query: 188 VTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTI 247
           +  EADFYG+MDGASKFV+GDAIA I+I+ INI+GG + GV+  GM +  A  +YTLLTI
Sbjct: 176 IQAEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTI 235

Query: 248 GDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GDGLV QIPAL++STA G++VTR +++ ++GE +  QLF  P  + ++A V  +L +  G
Sbjct: 236 GDGLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-G 294

Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQLEDSLGM 365
           +P L  L+    L+ L   +    QKA  E             +   N   +   D++ +
Sbjct: 295 LPLLPLLIVAIVLVALGRVMDKGSQKAVVEESAAARETALEESKKPENVLNLLNVDNMEL 354

Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425
           E+GY LI +VD QQ G+LL RI  IR++ A E+GF+ PV+ +RDNM+LQP +Y I ++G 
Sbjct: 355 ELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRGA 414

Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485
           E+  G+     +LA++ G     +PG  T +PAFGL+A WI +  +E+ ++ G TVV+A 
Sbjct: 415 EVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDAP 474

Query: 486 TVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLL 545
           TV+ATHL  +I  +A E+  RQ+ + LLD   ++ P   +D +   + L  L KVL NLL
Sbjct: 475 TVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEH-LDLGHLQKVLANLL 533

Query: 546 DEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTP 605
            E+V IRDM TILETLA++A    D   LT  VR +L R I Q       ++ V+ L+  
Sbjct: 534 RERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEPK 593

Query: 606 LERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
           LE+L+L ++Q         L+P +   L+      + +  + G  PVL+    +R  L R
Sbjct: 594 LEQLILDSIQPSDFGSYMTLDPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRINLKR 653

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
              R LPQL+VLS  EL     ++    +  
Sbjct: 654 VTERQLPQLMVLSYNELVHGVQVQAVGMVTT 684


>UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MGA3_RHOM4
          Length = 696

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/689 (46%), Positives = 437/689 (63%), Gaps = 11/689 (1%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
                 LP  L             I+LIL +M++PLP F+LD+L   NI +S+ +LL A 
Sbjct: 7   ATLTPNLPGGLARRFNTEALLASSIVLILFVMLVPLPPFLLDVLLATNITISLAILLTAF 66

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
           +  R LEFA FP +LL TTL RL+LNVASTR+IL EG      AG ++ AFG F+V GN+
Sbjct: 67  YAARPLEFAIFPGLLLLTTLFRLSLNVASTRLILSEGK-----AGALISAFGQFVVAGNY 121

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
            +G ++F++LV+INF+VITKG+GRIAEV ARF LD +PGKQMAIDADLNAGLI EDEA+K
Sbjct: 122 VVGAIIFIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARK 181

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           RR E+ +EADFYG+MDGASKFVRGDAIAG++I  +NI+GG L+GV QHGMS   AA+++ 
Sbjct: 182 RREEIAREADFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFV 241

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLG 303
           LL+IGDGLV+QIPAL+ISTAAG+IV+R S + ++ E+   QLF     +L++ + L LLG
Sbjct: 242 LLSIGDGLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLG 301

Query: 304 LVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363
           LVPG+P + F L     L L +  R  E++  A+P   +  E          ++ + D L
Sbjct: 302 LVPGLPLVPFWLLAGTTLLLGYQRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPL 361

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
            +E+GY LIP+VD  Q G+LL RI+ +R++ A E+G + P V IRDNM L   RY I ++
Sbjct: 362 ELEIGYGLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIR 421

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           G  +  G+  PG +LA+ P     T PG  T DP FGL A+W+       A+  G TVVE
Sbjct: 422 GNPVAEGEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVE 481

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
           A  V+ THL  ++ ++A  L  RQE ++LLD+V +  P L E+L P ++++  + KVL+ 
Sbjct: 482 APAVITTHLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKR 541

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LL E++PIRD+ +ILE LA+HA    +   LT  VR AL   IT+Q+      ++   LD
Sbjct: 542 LLRERIPIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLD 601

Query: 604 TPLERLLLQALQGGG------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
             LER LLQ  + G       GLEP  ++R L + +    R    G PPVLL +  LRP+
Sbjct: 602 PILERHLLQQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLRPV 661

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMT 686
           L  FL  S+P L VLS  +L  +  + + 
Sbjct: 662 LYNFLAPSIPDLNVLSYNDLLPDTRVEVV 690


>UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria
           RepID=Q21IQ2_SACD2
          Length = 755

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/722 (50%), Positives = 492/722 (68%), Gaps = 44/722 (6%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           ++      L+ PIL+L++L MM LPLPAF+LD  F+FNIALSI+VLLVA+++ R L+FA 
Sbjct: 25  IRGAGRGNLSVPILLLMLLGMMTLPLPAFLLDAFFSFNIALSIVVLLVAVYSLRPLDFAV 84

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPTILL  TLLRLALNVASTR++L+EGH G  AAGKV++AFG  ++GGN+A+G+VVF+IL
Sbjct: 85  FPTILLIATLLRLALNVASTRVVLLEGHQGGDAAGKVIQAFGEVVIGGNYAVGLVVFIIL 144

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           +IINF+V+TKGAGRI+EV ARF LD MPGKQMAIDADLNAG+I +DEA+ RR +V  EAD
Sbjct: 145 IIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEAD 204

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           FYG+MDGASKFVRGD++AGILI++INI GGLLVG++QH +    A E Y LLTIGDGLVA
Sbjct: 205 FYGAMDGASKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVA 264

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           QIP+L++S AA ++VTRV++ +D+  Q+++Q+F +P  + ++  ++ ++G +PGMP+  F
Sbjct: 265 QIPSLLLSVAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPF 324

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEP----------------------------------- 338
           +        LA++I  R Q+A                                       
Sbjct: 325 ITLAIICGILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSA 384

Query: 339 -KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397
            +     +++   E +W+DV   D +G+EVGYRLIP+VD  Q GELLGRI+ +RKK +Q+
Sbjct: 385 RQGNPPPQSSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQD 444

Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457
           +GFL P VHIRDN+DL P+ YRI + GV IG G+ +P ++LAINPG   G+L G  T DP
Sbjct: 445 LGFLIPAVHIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDP 504

Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVA 517
           AFGL AIWI+ A +EQAQ  GYTVV+ STVVATHLN +I  H  EL G +E Q+ LD + 
Sbjct: 505 AFGLEAIWIDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLG 564

Query: 518 QEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAV 577
           ++ PKL E+LVP  +++  L K LQ LL E+VPIRDMRTI E LA H     D   LT++
Sbjct: 565 EKSPKLVEELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSI 624

Query: 578 VRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG--------GGGLEPGLADRLL 629
            RV+L R I Q        + VI LD  LE+LLLQ++Q         G  +EP LA+RL 
Sbjct: 625 ARVSLARQIVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGASDGAFIEPQLAERLN 684

Query: 630 AQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
               E   +QEM G P VLLV   +RP++++F+R  + ++ V++  E+ DN+ I + ATI
Sbjct: 685 KSLVETAKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744

Query: 690 GG 691
           G 
Sbjct: 745 GA 746


>UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SNG5_9BACT
          Length = 696

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/680 (43%), Positives = 452/680 (66%), Gaps = 8/680 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           Q   +   I  + I+ +MVLPLPAF+LD+L T +IAL+I++L+VA+ +   L F+ FP++
Sbjct: 13  QQNDVMFSIFFIGIIVVMVLPLPAFLLDILLTMSIALAIVILMVAIHSDDPLNFSTFPSV 72

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RL+LNVA+TR IL+ G  G  AAG+V+ +FG F+VGGN+ +GI++F+ILV+IN
Sbjct: 73  LLIVTLFRLSLNVATTRTILLHGAEGEEAAGQVIRSFGQFVVGGNYVVGIIIFLILVLIN 132

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           FMVITKG+GRIAEV ARF LD MPGKQMAIDADLN GLI EDEAK +R ++ +EAD+YG+
Sbjct: 133 FMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYGA 192

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFVRGDAIAGI+I  INI+GGLL+GV QH M  G +A  +T+LTIGDGLV+QIP+
Sbjct: 193 MDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIPS 252

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IST+AG+IV+R     D+  Q+  QLFS+  V+ ++ A+L    LVPG+P + F+   
Sbjct: 253 LIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISIA 312

Query: 318 AGLLGLAWW---IRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374
           A +  L +     +   +K   E    +    +   E    ++   D + +E+G+ LIP+
Sbjct: 313 ALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLIPL 372

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
           VD  Q G LL RI++IR++ A EMGF+ P V IRDN+ L    Y +++K V + +G  +P
Sbjct: 373 VDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTIFP 432

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
            ++L +NP      + G  T +PAFGL A W++  +K+ A+++GYT+V+ STV+ATHL  
Sbjct: 433 EKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHLTE 492

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           +I ++A EL GRQE Q+LLD++ ++ PKL +D++P ++ L T+++VLQ+LL E+V IR++
Sbjct: 493 IIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIRNL 552

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
           +T++E LA       +P  L   VR+ L R IT+        ++V  L + +E++L  +L
Sbjct: 553 QTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLASSL 612

Query: 615 QGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
           Q         ++P LA ++L+   +        G PP+++++  +R  + RF+ + +P +
Sbjct: 613 QNTDDGQEIVIDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFVEKFVPNV 672

Query: 670 VVLSNLELSDNRHIRMTATI 689
            ++S+ E+S++  I     +
Sbjct: 673 NIMSHNEISESVRIESLGML 692


>UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae
           RepID=A3U131_9RHOB
          Length = 701

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/685 (39%), Positives = 406/685 (59%), Gaps = 10/685 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             + + +A  + + L+L+++ +PLP  ILD     +++LS+++L+VA++  + L+F +FP
Sbjct: 19  GLKNRDIAFAVGVTLVLAVLFIPLPPIILDFGLAISLSLSVLILMVALWIPKPLDFNSFP 78

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           T+LL  T+LRL+LNVASTR+IL EGHTG  AAG V+E F  F+V GNF IGIV+F ILV+
Sbjct: 79  TLLLVVTMLRLSLNVASTRLILSEGHTGPGAAGGVIEGFSRFIVSGNFVIGIVIFAILVV 138

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           INF+VITKG+ RIAEV ARF LD MPGKQMAIDADL AGLI E EAK RR  +  E+ F+
Sbjct: 139 INFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDESGFF 198

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFVRGDA+AGI+I +IN++GG+L+GV+Q+ +S+  AA SYT LTIGDGLV Q+
Sbjct: 199 GAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLVTQV 258

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PAL++S AAG+IVT+  T+    E ++ QL   P  + ++A +L  +GL+PG P +VF  
Sbjct: 259 PALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIVFFA 318

Query: 316 FTAGLLGLAWWIRGREQKAPAE---PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
               + GL W+I  +E++   +    +  K        E T       D L +E+G  L+
Sbjct: 319 LGGLMAGLGWYIGQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRLEMGEALV 378

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
           P++    D  L G+I+S+R  FA+E GF+ P V I D   L    Y +L++GVE+  G+ 
Sbjct: 379 PLMSAA-DAALPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVARGEV 437

Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
            P   + +NP      + GEA  DP FGL+A+WI+     +A+ QGYTVV+  +V+ THL
Sbjct: 438 RPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVITTHL 497

Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             ++ +H  +L      Q L++ + ++  KL  + + G      +  VLQ LL E+V +R
Sbjct: 498 TEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGE-IGGTSPAIMIQHVLQGLLGERVSVR 556

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612
           ++  I+E +AE     S+   +   VR  L   I +        + VI L    ++  + 
Sbjct: 557 NLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQEFVD 616

Query: 613 ALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
           +++  G      + P      +   +  +         P +LV+   R  +   L R  P
Sbjct: 617 SIRMNGDDKTLIMSPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIRNMLERVSP 676

Query: 668 QLVVLSNLELSDNRHIRMTATIGGK 692
              V+S+ E+  N ++R  ATIG +
Sbjct: 677 MTQVISHNEVHRNANLRTLATIGRE 701


>UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes
           RepID=A9KND9_CLOPH
          Length = 677

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/681 (37%), Positives = 417/681 (61%), Gaps = 12/681 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + I+  +  +++P+PA +LD L   NI++S+++L  A+F+Q  L  + FPTI
Sbjct: 2   KKTDLGIGLFIISSIIFLIVPMPATLLDFLLALNISISMIILFNALFSQEVLNMSTFPTI 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LLFTT+ R++LNV+ST++IL  G+      G VV  FG F+   +  IG++VF+IL+II 
Sbjct: 62  LLFTTVFRISLNVSSTKLILSSGNP-----GAVVTQFGRFVGQDDVIIGVIVFIILIIIQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VI KG+ R++EV ARF LD MPGKQMAIDADLN G I + +A++RR ++ +E++F+G+
Sbjct: 117 FIVINKGSERVSEVTARFTLDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA+K+V+GDA+AG++I V+N++GG ++G+++ G+  G A   Y +LTIGDGLV+QIP+
Sbjct: 177 MDGATKYVKGDAVAGLIITVVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPS 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IS A G++VT+VS + D+G+ ++ QLFS P V+ +    L  LG+V  +P +VF  + 
Sbjct: 237 LMISLATGIVVTKVSKEADIGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYG 296

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375
           A  +     I  R + A  E +     ++   +    N V     D + +E GY +IP+ 
Sbjct: 297 AMFIFCGRVIDKRVKIASIEEEASTEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLA 356

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL R+  IR++ A E+G + P + +RDN+ L P +Y I +KG+ +  G+    
Sbjct: 357 DVNQGGDLLDRVVLIRRQIALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFD 416

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            ++A+NPG     + G  T +P+F L A+WI  + +E+A+  GYTVV+  +++ATHL  +
Sbjct: 417 HYMAMNPGYVEEEITGIPTFEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEV 476

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I  H  EL  RQ+ Q L+  + +    L  +LVP ++ +  + KVLQNLL E + IRD+ 
Sbjct: 477 IRGHLDELLTRQDVQNLITNITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLV 536

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           TI ETLA++AP   D   LT  VR +L RAI+ ++F   +   V+ LD  +E+ ++ +++
Sbjct: 537 TIFETLADYAPTTRDTDVLTEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVK 596

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    ++P     ++   ++ + + E LG  P+++ +  +R    +  +     L+
Sbjct: 597 QTEQGAFLAIDPEKTQSIMKSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFNDLI 656

Query: 671 VLSNLELSDNRHIRMTATIGG 691
           V+S  E+  N  ++    +  
Sbjct: 657 VISYNEIESNVELQSVGMVTA 677


>UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae
           RepID=FLHA_BUCBP
          Length = 702

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/700 (58%), Positives = 523/700 (74%), Gaps = 9/700 (1%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           M+N+ ++ +     +  ++Q L+GP+LIL+ILSMMVLPL  FILDL FTFNIALSI+VLL
Sbjct: 1   MANILSIFKTFEIKRLVKFQTLSGPVLILIILSMMVLPLAPFILDLFFTFNIALSIVVLL 60

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           ++MFT +TLEF +FPTILLF+TLLRLALN+ASTRIIL+ GH G+ +AG V++AFGHFLVG
Sbjct: 61  MSMFTTKTLEFTSFPTILLFSTLLRLALNIASTRIILLNGHIGSCSAGNVIQAFGHFLVG 120

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNF IGI+VF+IL+IINFMVITKGA RIAEVGARF LDGMPGKQMAIDADLNAGLIGE +
Sbjct: 121 GNFTIGIIVFIILIIINFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQ 180

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR E+ QEADFYGSMDGASKFVRGDAIAGILIM++NI+GGL++G+LQH M+   AA+
Sbjct: 181 AKKRRIEINQEADFYGSMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQ 240

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
            YT+LTIGDGLVAQIPALV+STA+GVIVTRVSTDQ+V EQ+V+QLF NP V+LLS  VLG
Sbjct: 241 VYTILTIGDGLVAQIPALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLG 300

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENN---TVVEATWNDV 357
           +LGLVPGMPN++FL+FT  L  ++W I             +K  +N     + +A+WNDV
Sbjct: 301 VLGLVPGMPNIIFLIFTTLLFFISWLIYRNPVIFTNFESTMKKIDNTNFCNISDASWNDV 360

Query: 358 QLEDSLGMEVGYRLIPMVDFQ-QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           QLE S+ +E+G  LIPM+    +   LL +IR++RKK A+ +GFLPP+VHIRDN +L   
Sbjct: 361 QLEGSISIELGNLLIPMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGN 420

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQA 474
            Y IL+KG+EI  G    G++LAIN G A+G   LP E T DP F   + WI S L  QA
Sbjct: 421 CYCILIKGIEISKGTVQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQA 480

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           + +GY + E STV++THLNH+I  H + LFGRQEAQQLLD V++  PKL EDL+P  + L
Sbjct: 481 KQKGYNIAEDSTVISTHLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINL 540

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPG 593
           T  H+VLQNLL E VPIRDM+TILETL  HAP    D   LT++VR++LG+ I Q  F  
Sbjct: 541 TIFHQVLQNLLIENVPIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIF-Q 599

Query: 594 KDEVHVIGLDTPLERLLLQALQGGGG-LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
            +++ VI  D+ LE++LL+ +      LEPGL + ++ + Q+  +  ++   P VLLV+H
Sbjct: 600 NNKIEVIKFDSKLEQILLKTIANKDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHH 659

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            LR  +++ L +++P++ VLSNLEL D   I  T  IG +
Sbjct: 660 NLRVFIAKMLLKNIPKIFVLSNLELEDVTKIYTTNIIGDQ 699


>UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria
           RepID=A6Q2M0_NITSB
          Length = 695

 Score =  763 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/684 (42%), Positives = 449/684 (65%), Gaps = 8/684 (1%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
             K  +       ILIL IL+ M+LP+P F LDLL T +I  S+++L+  ++    LE A
Sbjct: 9   FSKVHEHSDAIIIILILAILASMILPVPPFFLDLLLTASITFSLVILMTTVYVGNPLEIA 68

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FP++LL  TL RLALN+A+TR IL+ GH G  AAGK++E+FG F+VGGN+ +GI++FVI
Sbjct: 69  SFPSLLLLATLFRLALNIATTRRILLHGHEGPEAAGKLIESFGQFVVGGNYIVGIIIFVI 128

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           LV INF+V+TKG  RI+EVGARF LD MPGKQMAIDADLNAGLI E EA++RR  + +EA
Sbjct: 129 LVTINFIVVTKGTERISEVGARFTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIAKEA 188

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYG+MDGASKF+RGDAIAGI+I  INI+GG+ +GVLQHGM +  AA ++TLLT+GDGLV
Sbjct: 189 DFYGAMDGASKFIRGDAIAGIIITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGDGLV 248

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +QIP+L+ STAAG++VTR  ++ ++G+++ +QL S P  + ++A  L ++G VPGMP + 
Sbjct: 249 SQIPSLITSTAAGLMVTRAVSETNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMPFIP 308

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE--NNTVVEATWNDVQLEDSLGMEVGYR 370
           F +    +   A+ ++   ++   E +  ++ E     V E+    +   +++  E+GY 
Sbjct: 309 FTILAGMIALTAYMMQLEMKRETIEKEEEEVKEILQQQVEESEEEYITQPETITFEIGYG 368

Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430
           LIP+VD ++ GELL RI+S+RK+ ++E+G + P++HI+DN++L+   YRIL+KGVE+   
Sbjct: 369 LIPLVDEEKGGELLKRIKSLRKQLSKELGLMVPLIHIKDNLELKSGEYRILLKGVEVARY 428

Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
              PG+ LAI+ G   G L G  T +P FGL A WI+ + K++A++ G+TVV+  TV+ T
Sbjct: 429 QIEPGKMLAIDTGQTNGKLEGVETTEPTFGLKAYWIDESQKDKARMLGFTVVDIPTVIIT 488

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
           HL+ +I Q+A E+ GR E ++L+D++ Q+ P + +++VP  V    LH+VLQNLL E +P
Sbjct: 489 HLSEIIKQNAHEILGRSETKELVDKLGQKYP-IVKEIVPEQVPYAILHRVLQNLLREHIP 547

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610
           I+D+ TI+E+L+++     D   LT +VR +L R IT  +      ++ + LD   E  L
Sbjct: 548 IKDLLTIIESLSDNITKTEDTDILTELVRESLARLITSIYA-KDGVLYALTLDPASEEKL 606

Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
              ++   G    ++P      + Q  + + +  +    PVLL +  +R  + + +   +
Sbjct: 607 YAKIKEYNGNLPPIDPAKLQSFIMQISKNMEKFVIEQRTPVLLTSPNVRRYVYKIIEPYM 666

Query: 667 PQLVVLSNLELSDNRHIRMTATIG 690
             + VLS  E+     +++   + 
Sbjct: 667 SNVAVLSYNEVDPKTKLKIIDKVS 690


>UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia
           RepID=B0K1R1_THEPX
          Length = 673

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/677 (42%), Positives = 425/677 (62%), Gaps = 15/677 (2%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   + ++ I+ ++++P+P  I+D L   NI LSI++LL  M+ +  L+F+ FP+I
Sbjct: 2   KASELTVALFVVGIVLLIMIPVPPVIMDFLLISNITLSIIILLTTMYVKDALDFSIFPSI 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL TTLLRLALN++STR+IL   +     AG V++AFG F++GGN  +G ++F+I+ I+ 
Sbjct: 62  LLITTLLRLALNISSTRLILSNTY-----AGNVIQAFGSFVIGGNPIVGFIIFLIIAIVQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VIT+GA R++EV ARF LD MPGKQMAIDADLNAGLI E EA++RR E+ QEA FYG+
Sbjct: 117 FIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQQEAKFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIA I+I++INIV GL++G++  GM +  A  +Y +LT+GDGLV+QIPA
Sbjct: 177 MDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGDGLVSQIPA 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+ISTA G+IVTR +++ ++G  ++ QLF+ P ++ ++A +L  L LVP +P L  +L  
Sbjct: 237 LLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLPKLPLILIG 296

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377
           +    L +    +      E +       N        ++   D + +E GY LIP+   
Sbjct: 297 SLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKKVYELLQVDPIELEFGYELIPLAS- 355

Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437
              GELL RI  IR++ A ++G + P++ +RDN+ L+P  Y I ++G EI  G  Y  R+
Sbjct: 356 ---GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGNEIARGKVYVDRY 412

Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
           +A+  G     + G    +PAFGL AIW++   + +A+ +GYTVV+  +V+ATHL H+I 
Sbjct: 413 MAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVPSVIATHLTHVIK 472

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           QHA EL GRQE Q L+D V    P L E+LVP ++T+  + KVL NLL E + IRD+ TI
Sbjct: 473 QHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLLREGLSIRDLVTI 532

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
           LETLA++API  D   LT  VR AL R I+ ++ P   ++ VI LD  +E+L+  ++   
Sbjct: 533 LETLADYAPIIRDTDVLTEYVRQALARTISNKYAPY-GKIEVITLDPSVEQLISSSITQT 591

Query: 618 G-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
                  LEP  A R+L    E   +  + G  PV+L     R  L + + +  P + VL
Sbjct: 592 EHGSYLALEPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRFYLRKLVEQISPDIAVL 651

Query: 673 SNLELSDNRHIRMTATI 689
           S  EL  N  +    T+
Sbjct: 652 SYNELLPNIEVASVETV 668


>UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria
           RepID=C4Z5H9_EUBE2
          Length = 679

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/681 (37%), Positives = 421/681 (61%), Gaps = 12/681 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L   I +L  +   ++ +P+++LD+L   NI ++++VL  ++F +  L+ A+FPT+
Sbjct: 4   KKNDLFIGIYLLAAVLFFIISIPSWLLDILLAINILVALVVLFNSLFAKEVLDMASFPTM 63

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LLFTT+ R++LNV+ST++IL  G+     AGKVV+ FG F+  GN  IGI++F+IL+II 
Sbjct: 64  LLFTTIFRISLNVSSTKLILKNGY-----AGKVVDTFGKFVGSGNLVIGIIIFIILIIIQ 118

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VI KG+ R+AEV ARF LD M GKQMAID+DLN G I + EA +RR ++ QE  F+GS
Sbjct: 119 FIVINKGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGS 178

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGA+K+V+GDA AG++I  IN++GG+++G+   G+++  A   YT+LTIGDGL +QIP+
Sbjct: 179 MDGATKYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPS 238

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+IS A GV+VT+ S++ ++G++++ QLFS   V+L+  A L LLG+   +P  +F+   
Sbjct: 239 LLISLATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLG 298

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV--QLEDSLGMEVGYRLIPMV 375
             L+     +  +  +   E    +     + +    N V     D + +E GY +IP+ 
Sbjct: 299 MALIIYGRKLSAKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLA 358

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL R+  IR++ A E+G + P++ +RDN+ L P +Y I +KG+++  G+    
Sbjct: 359 DVNQGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFD 418

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            ++A+NPG     + G  T +P+F L AIWI  + +E+A+  GYTVV+  +++ATHL  +
Sbjct: 419 HYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEV 478

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I QH AEL  RQ+ Q L++ +      L E+LVP ++ +  + KVLQNLL+E + IRD+ 
Sbjct: 479 IRQHIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLV 538

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           TI ETLA+HA +  DP  LT  VR AL RAI+ ++F   +  +V+ +D  +E+ ++ +++
Sbjct: 539 TIFETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVK 598

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    L+P  + +++      L + E +G  P+++ +  +R       +     ++
Sbjct: 599 NTEQGSYLSLDPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKDII 658

Query: 671 VLSNLELSDNRHIRMTATIGG 691
           V+S  E+  N  ++    +  
Sbjct: 659 VISYNEVESNVELQSVGMVTA 679


>UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1
           Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT
          Length = 694

 Score =  760 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/681 (43%), Positives = 449/681 (65%), Gaps = 7/681 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  +   +   I +L +L +M++PLP +++D++   NI + +++LL A++  + LEF+ F
Sbjct: 11  RIGKQPDILLAISVLAVLLVMMVPLPTWLMDVMLAANITVGVLILLTALYVLKPLEFSVF 70

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RL+LNVA+TR+IL+ G  G AAAG V+E FG F+VGGN  +G+++F+ILV
Sbjct: 71  PSLLLLTTLFRLSLNVATTRLILLNGQDGPAAAGHVIEGFGQFVVGGNTLVGVIIFIILV 130

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           +INF+VI+KG+ RIAEV ARF LD MPGKQMAIDAD+NAGLI E EA+ RR  V +EA+F
Sbjct: 131 LINFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEF 190

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGASKFVRGDA+AG++I VIN+VGGL++GV+QHGMS+  A   ++LLT+GDGLV+Q
Sbjct: 191 YGAMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQ 250

Query: 255 IPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           IPALVISTAAG+I+TR S+++ +  ++  Q  ++P V  ++A  L L+ LVPG+P + FL
Sbjct: 251 IPALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFL 310

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAE-NNTVVEATWNDVQLEDSLGMEVGYRLIP 373
           + + GL    ++++  +Q+   E     +      + E   +D+ +ED + +E+GY LI 
Sbjct: 311 ILSLGLGASGYYLQLGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLID 370

Query: 374 MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAY 433
           MV+  ++G LL R++ +R++  QE+GF+ P VHI+DN+ L  + Y+IL++G  +G G+  
Sbjct: 371 MVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEIR 430

Query: 434 PGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLN 493
           P   LA+    +   + G AT +PAFGL A+WI    ++QA++ GYTVVE +TV+ THL 
Sbjct: 431 PRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHLT 490

Query: 494 HLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRD 553
            L+   AAE+  R +   LL++ AQ  PK+ E++VP  V +  L  VLQ LL E VPIRD
Sbjct: 491 ELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIRD 550

Query: 554 MRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ- 612
           +  ILE L++HA       +L   VR  LGR ITQ++   + E+ V  LD  LE+ + + 
Sbjct: 551 LMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSER 610

Query: 613 -ALQGGGGLEPGLA--DRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQL 669
            + Q G  L   +    R +++  E  S  ++    PVLL    LR  L+R LR+ + ++
Sbjct: 611 MSQQQGWALPLDMPEWQRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTRALRKVMTRI 668

Query: 670 VVLSNLELSDNRHIRMTATIG 690
            VLS  E+    +I+  A + 
Sbjct: 669 AVLSIAEIPPQTNIQSLAKVS 689


>UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2
           Tax=Bacteria RepID=Q1Q6S4_9BACT
          Length = 695

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/688 (41%), Positives = 447/688 (64%), Gaps = 15/688 (2%)

Query: 11  PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70
            A  K      +A  I ++ I  ++++P+P FI+DLL T NI+L +++LLV++  +  L+
Sbjct: 12  NAFFKYLFKGDMALIIGVISIFIVLIIPVPPFIIDLLVTTNISLVLLLLLVSLHIKGALD 71

Query: 71  FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130
            ++FP+ILLF TL RLALNVASTR IL++G+      GKV+ AFG F+VGGN  +G+VVF
Sbjct: 72  LSSFPSILLFMTLFRLALNVASTRQILLQGY-----GGKVIGAFGDFVVGGNMLVGLVVF 126

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           +I+V+I F+VITKGA RI EV ARF LD MPGKQM+IDADLNAGLI E EA++RR ++++
Sbjct: 127 LIIVVIQFIVITKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSR 186

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           EA+FYG+MDGA KFV GDA+AGI+I++INI+GG+++G+ + GMS+  A + YTLLT+GDG
Sbjct: 187 EAEFYGAMDGAGKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDG 245

Query: 251 LVAQIPALVISTAAGVIVTR-VSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           LV+QIP+ +I+TA+ VIVT+  +T +++G  +  QLFS P+ +  +  +L L  +VPG+P
Sbjct: 246 LVSQIPSFIIATASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLP 305

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEP---KPVKMAENNTVVEATWNDVQLEDSLGME 366
            + FL+       + + +R   ++        K  +        E +   +   D + +E
Sbjct: 306 KIPFLVLAGFFWMMFFVLRRSSKETELAEALVKETEGMAREPKKEESVEGMLRVDRMELE 365

Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426
           VGY+L+P+VD  ++G +L RI ++R + A++MG + P + +RDN+ L+  +Y + ++G E
Sbjct: 366 VGYKLVPLVDPNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQE 425

Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486
           I  G+   G +LAI+ G     + G  T+DPA+GL A+WI  A+KE A+  GYTVV+ ++
Sbjct: 426 IAHGELLTGSYLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPAS 485

Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546
           V+ THL  +I  HA E+  R++ Q+LL+ V ++ P + E+L P +++L ++ ++L+NLL 
Sbjct: 486 VMITHLTEIIKTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLK 545

Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606
           E+VPIRD+ +ILET+A++AP   D  +LT  VR  L R I +++   + ++ VI  D  L
Sbjct: 546 EQVPIRDLSSILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHL 605

Query: 607 ERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRF 661
           E+ +  A+          L+P +A +++ +  E +      G   VLL + ++R  + R 
Sbjct: 606 EQTIANAIHKTEKGNLLALDPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRL 665

Query: 662 LRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +LPQL VLS  E+S    I     +
Sbjct: 666 IENALPQLAVLSYKEISPGVMIDSVGVV 693


>UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72
           Tax=Proteobacteria RepID=Q5DY37_ECOLX
          Length = 697

 Score =  758 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/698 (42%), Positives = 441/698 (63%), Gaps = 16/698 (2%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
                + L   +   L  P++IL IL+M++LPLP  +LD+LFTFNI L++MVLLVA+  +
Sbjct: 2   AKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAK 61

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
           R LEF+ FPTILL TTL+RL LNVASTR++L+ GH GA AAGKV+E+FG  ++GGNF +G
Sbjct: 62  RPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVG 121

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
            VVF+IL+IINF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR 
Sbjct: 122 FVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRK 181

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
           +V  EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+T
Sbjct: 182 DVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMT 241

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306
           IGDGLVAQIP+L++STAA +IVTRVS + D+   + +QL ++PSV+  +  ++ +L +VP
Sbjct: 242 IGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVP 301

Query: 307 GMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA----ENNTVVEATWNDVQLEDS 362
           GMP+L FLLF+A L    W +  R Q A AE K ++         +  + +W  + L + 
Sbjct: 302 GMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 361

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + + +GY+L+ +VD  Q   L  RIR +R+  +   G L P + IR+N  L+P++Y I +
Sbjct: 362 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 421

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
            G++    D    + +A+      G + G    DPA+G+   WI+ A K +A   GY V+
Sbjct: 422 NGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVI 481

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           ++++V+ATH+N ++  +  +LF   +  QL +R++   P+L EDL    +  + L KV +
Sbjct: 482 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDL-SAALNYSQLLKVYR 540

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E V +RD+ TI   L   + +  D   L A VR+AL R+IT  +   K E+ V  L
Sbjct: 541 ALLTEGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 599

Query: 603 DTPLERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           +  LE LL     QA Q G  +      +P + ++  +   +   + +  G  PVLLV  
Sbjct: 600 NNELENLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPP 659

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            LRPLL+R+ R   P L VLS  E+ D   +++   + 
Sbjct: 660 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALS 697


>UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales
           RepID=C2ED96_9LACO
          Length = 692

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/692 (36%), Positives = 409/692 (59%), Gaps = 16/692 (2%)

Query: 9   RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68
           +  A         +    L++ I+ ++++PLP  +LD+    N+ ++I +LL+ +FT+  
Sbjct: 4   KAKAKKGGLTPAEIVISFLVIGIVGLIIIPLPTSLLDIFIVTNLTVAINILLITLFTKSV 63

Query: 69  LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128
           LEF+ FPT+LL TT+ +L LN++STR IL  G+      G V+EAF   + G N+ +GI+
Sbjct: 64  LEFSTFPTVLLITTMFKLGLNMSSTRSILTTGN-----GGHVIEAFADVVAGENYIVGII 118

Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188
           +FVI++I+  +V+T G+GR++EV ARF LD MPGKQMAID+DLN+G I E++A++RR ++
Sbjct: 119 LFVIIMIVQLVVVTNGSGRVSEVSARFTLDAMPGKQMAIDSDLNSGAITEEQARQRRKDL 178

Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248
            +EADFYGSMDGASKFV+GDAIAGI+I+++N++GG ++   +  +S+  A   +  L IG
Sbjct: 179 QREADFYGSMDGASKFVKGDAIAGIIIVLVNLIGGTIIFTAKGDLSITDALSQFGKLAIG 238

Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           DGLV+ +P+L+IS A GVIVTR   +   G  + +    NP +  +   +L +L LVPG 
Sbjct: 239 DGLVSSVPSLLISLATGVIVTRSEDNSTFGTDIASDALRNPQLFKVVGVILLVLALVPGF 298

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA---ENNTVVEATWNDVQ--LEDSL 363
           P + F++ +  +      ++ +E++   E    +     +     +   +DV     + L
Sbjct: 299 PKIPFIVLSLAMFAANVLVKQKEEQRIKERIKEEQTLALQRKKEEQEEDDDVASFQVEPL 358

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
            +E+GY LIP+VD   D  L+ RI +IR++ A E+G L   V IRDN+ L    Y I ++
Sbjct: 359 SIEIGYGLIPLVDSTIDNSLMNRISAIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIR 418

Query: 424 GVEIGSGDAYPGRWLAIN-PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           G E+G GD YP +++ I+     +    G  T +PAF L+A+WI+   KE A +QG+TV+
Sbjct: 419 GNEVGHGDIYPDKYMIISQSDDGSFPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVI 478

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           E  TV+ATHL  +I  HA EL GRQE Q+LL+ +      + ++L+P ++ L  + KVLQ
Sbjct: 479 EPLTVIATHLKEIIHAHAPELLGRQEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQ 538

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
           NLL+E VPI D+ TILETLA++  +  D   LT  VR  L R I  ++    D ++V+ +
Sbjct: 539 NLLEENVPINDLSTILETLADYGTVTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTI 598

Query: 603 DTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
              +E ++ Q++Q         ++P   +++L    +   +        V+L +  +R  
Sbjct: 599 HPKVEEMVSQSIQKTATGSYPVMKPDSVNKILTAIGDISQQMAAQNMNYVILTSPKIRLA 658

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             + +  + P + VLS  E+ +   I     I
Sbjct: 659 FRKLIAFNFPDVAVLSLNEIPNEIAIESIGNI 690


>UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae
           RepID=D2QZ28_9PLAN
          Length = 690

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/683 (40%), Positives = 429/683 (62%), Gaps = 9/683 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           + +Q + L  P+ I+  + ++++P+P+ ++DLL   NI +S++VLL  ++ +  LEF  F
Sbjct: 3   RLSQLRDLVLPVGIIASVLVILVPMPSELIDLLLAINITVSVIVLLTTIYVRTPLEFNIF 62

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHT-GAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           PT+LL TTL RL LNVASTR+IL    T G  AAG V+ AFG F+ G    +GI+VFVI+
Sbjct: 63  PTMLLATTLGRLVLNVASTRLILTHARTEGMDAAGGVIRAFGEFVAGDQIVVGIIVFVII 122

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           V+I F+VITKGA RI+EV ARF LDGMPGKQMAIDADLNAG+I + EA++RR EV Q+AD
Sbjct: 123 VVIQFVVITKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQAD 182

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           F+G+MDGASKFVRGDAIAGI+I ++N++GG ++GV+Q+ M +  +AE +T L+IGDGLV+
Sbjct: 183 FFGAMDGASKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVS 242

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           Q+PA + S AAG++ TR S  Q++    + QLFSNP  ++++   + +L ++  +P +  
Sbjct: 243 QVPAFLTSLAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPL 301

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNT--VVEATWNDVQLEDSLGMEVGYRL 371
           L   AG  GLA  +  +++   A+      A        E    D    D + +E+G  L
Sbjct: 302 LAIGAGCGGLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERIEDFLSVDPMEIEIGAGL 361

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           I + + +Q G+LL RI ++R+  A ++G + P V ++D   L   +YRI + G  + +G+
Sbjct: 362 IRLANPKQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGE 421

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
             PG++LAI+ G   G +PG  T DPAF   A+WI+S L+E+AQ+ GYT VE + V+ATH
Sbjct: 422 VLPGKFLAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATH 481

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L  ++ +HA EL  R   + LLD + +  P + ++LVP  + ++ + +VLQ LL E+V I
Sbjct: 482 LQEVVRRHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSI 541

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           R++ TILETL + A    DP  LT  VR  L R I+ ++   ++ +HV+ LD  LE  + 
Sbjct: 542 RNLSTILETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIA 601

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
             ++         L+P + +R+  +    L++    G  P++LV+  +R  L      +L
Sbjct: 602 AGVEHSERGLFVRLQPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661

Query: 667 PQLVVLSNLELSDNRHIRMTATI 689
           P+L VLS  E++ +  + +   +
Sbjct: 662 PRLHVLSFNEVTRDTKVDILGVV 684


>UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria
           RepID=A0LT74_ACIC1
          Length = 708

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/687 (41%), Positives = 436/687 (63%), Gaps = 14/687 (2%)

Query: 9   RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68
                +++ +   L  P  ++ I+ MMV+PLP  +LD+L   NI  +++VLLV+MF +R 
Sbjct: 24  TRRGGVRAKRLGELGIPAGVIAIIVMMVVPLPTALLDVLLATNITFALLVLLVSMFVKRP 83

Query: 69  LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128
           L+FAAFP++LL  TL RLALN++ TR++L+ G+     AGKVV++FGHF+VGG+  +G+V
Sbjct: 84  LDFAAFPSLLLIATLFRLALNISVTRLVLLHGY-----AGKVVQSFGHFVVGGSLVVGLV 138

Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188
           +F+I++II F+VIT GAGR+AEVGARF LD MPGKQMAIDADLNAGLI E EA++RRSE+
Sbjct: 139 IFLIILIIQFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEI 198

Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248
             EADFYG+MDGASKFV+GDAIA ++I  +N++GGL +G+LQ  +S+G A  +Y+LL++G
Sbjct: 199 AAEADFYGAMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVG 258

Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           DGLV+QIPAL++S + G+IVTR +++ D+G  ++ Q+ S    + +  A + ++ L+PG+
Sbjct: 259 DGLVSQIPALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGL 318

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
           P L FL+     L L   ++   + A  +P     A      EA   ++   + L + + 
Sbjct: 319 PKLPFLILGGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEM-RVEPLELNLA 377

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           + L+ +VD  + GELL R+R++R+K A E+G + P+V  RDN+DL P  Y I + GVE+ 
Sbjct: 378 FDLVDLVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVA 437

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
            G+A PG  LAI  G     LPG AT++P FGL   W+   L++QA++ G TVV+ ++V+
Sbjct: 438 RGEAPPGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVI 495

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
            THL  ++  +AA+L  R++ + L +   +  P + E+L P ++ L  + +VLQ LLDE 
Sbjct: 496 TTHLAEVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEH 555

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           VPIRD+  I E L++ A +  DP  L    R  LG AI+  +      + V+ +D   E+
Sbjct: 556 VPIRDLPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYA-QDGRLSVLTIDPLTEQ 614

Query: 609 LLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
            L+  L+ G       L+P  A+ L+ + +    R E LG  PVL     LRP L R +R
Sbjct: 615 RLVDKLRHGEHGSFLALDPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVR 674

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIG 690
            + P+L VL+  EL  +  +    T+ 
Sbjct: 675 SANPRLPVLAYGELGPHLQLETVGTVS 701


>UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes
           RepID=FLHA_BACSU
          Length = 677

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/679 (41%), Positives = 428/679 (63%), Gaps = 12/679 (1%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
             + L+  I ++LI++M+V+P P ++L +L   NI+L+++VLL  M  Q  L+F+ FP++
Sbjct: 2   STRDLSVLISVVLIVAMLVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSL 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RL LNV++TR IL  G       GKVVE FG+F+VGGN  +G+VVF+IL+II 
Sbjct: 62  LLLLTLFRLGLNVSTTRSILSHG-----EGGKVVETFGNFVVGGNVLVGLVVFIILIIIQ 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGA R++EV ARF LD MPGKQM+IDADLNAG+I E EAK RR +V +EADFYG+
Sbjct: 117 FIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFV+GDAIAGI+I++INI+ G+++G+LQ GMS+  AA  +T+LT+GDG+V+QIPA
Sbjct: 177 MDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPA 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L+ISTA G++VTR +++ ++G  +  QLF+ P ++ ++AA + LLG+   +  L+     
Sbjct: 237 LLISTATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLA 296

Query: 318 AGLLGLAWWIRG--REQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375
             L   A+ +    +E++   E    +   +      +   +   D +  E GY LIP+ 
Sbjct: 297 GLLAFGAYTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLA 356

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  Q G+LL RI  IR++ A E+G + PVV IRDN+ LQP  YR+ +KG E+  G+    
Sbjct: 357 DANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLD 416

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            +LA++P      + G  TV+P+FGL A WI  A+K++A + GYTVV+ ++VV+TH+   
Sbjct: 417 HYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEK 476

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I QHA EL GRQE +QL+D + +  P L E++ P  +++  + KVL  LL EKV IR++ 
Sbjct: 477 IKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 536

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           TI ETLA++  + +D   LT   R AL + IT Q+    + + V+     +E+ +   +Q
Sbjct: 537 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQ 596

Query: 616 GGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
                    LEP +++ ++    +   +  +     +LL +  +R  + + L R  P L 
Sbjct: 597 QTEHGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLP 656

Query: 671 VLSNLELSDNRHIRMTATI 689
           VLS  EL  N  ++    +
Sbjct: 657 VLSYNELEANVEVQSIGVV 675


>UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae
           RepID=FLHA_AQUAE
          Length = 678

 Score =  743 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/675 (42%), Positives = 447/675 (66%), Gaps = 4/675 (0%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           + +     + ++LILS +++P+PA +LDLL T +I  S+ VLL+  F +  LEF++FP++
Sbjct: 2   RGKEFWIILAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSV 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TLLRL+LN+A+ R IL+ GH G  AAGKV+EAFG  + GG+  +G++VF+I ++IN
Sbjct: 62  LLLGTLLRLSLNIAAARRILLHGHEGTHAAGKVIEAFGKLVAGGDVVVGLIVFLIFIVIN 121

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGA RI+EV ARF LD +PGKQM+IDADLNAGLI E+EAK+RR E+ +EA+FY +
Sbjct: 122 FIVITKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAA 181

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKF+RGDAIA ++I+ +++VGGLL+G+   GM +  A ++YT+L+IG+GL +Q+PA
Sbjct: 182 MDGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPA 241

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           L++STAAGV+ T++S+ +++GE +  +L   P  +L SA VLG +GL+PG+P L FL  +
Sbjct: 242 LLLSTAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMS 301

Query: 318 AGLLGLAWWIRGREQKAPAEP-KPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVD 376
           A L G  + ++   ++   +  + +   +     E     +   + + +E+GY LIP+VD
Sbjct: 302 AILAGAYYLVQQSLKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVD 361

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGR 436
             Q G++  +I+++RK+ A+E G + P++HIRDN+ L+P  YRIL+KG+EI   +  PG 
Sbjct: 362 ESQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGH 421

Query: 437 WLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLI 496
           +LA+N G A G + G  T DPAF + A WI    KE+AQ  GY VV+A TV+ THL+ +I
Sbjct: 422 YLAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVI 481

Query: 497 SQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRT 556
            ++  EL  R E  +L++ ++++ PK+ +++VP  V ++ +H+VLQNLL E +P+ D+ T
Sbjct: 482 KRNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLT 541

Query: 557 ILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQG 616
           ILETLA++     DP  LT  VR AL + IT+ +      ++ I L   +E  L++ L+ 
Sbjct: 542 ILETLADYIEQTKDPDLLTEYVRQALSKRITRMYL-TNGTLYAIALSPKVEAKLVKFLKE 600

Query: 617 GGGLEPG--LADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
               E    + + LL + +  + +    GA PVLL +  +R  + + +   L +L VLS 
Sbjct: 601 NREDEFIDYVLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSELAVLSY 660

Query: 675 LELSDNRHIRMTATI 689
            EL    +I++   +
Sbjct: 661 NELEKQVNIKIIGIV 675


>UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae
           RepID=A9BHY7_PETMO
          Length = 710

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/702 (40%), Positives = 436/702 (62%), Gaps = 28/702 (3%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N    +   +   ILI+ I+ +MV+P+P F+LD L   NI +SI++LL  ++ +R L+ +
Sbjct: 2   NFTRIKGLDVIISILIVGIVVLMVIPIPTFLLDFLQLLNIIISIIILLATLYLKRALDIS 61

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FP++LL  T+ RLALNV+STR+IL+ G       GKV+ AFG F+VGGN+ +GI++F+I
Sbjct: 62  IFPSLLLVMTIFRLALNVSSTRLILLNGK---NFEGKVIRAFGDFVVGGNYIVGIIIFLI 118

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           LVII F+VITKG  RI+EV ARF LD MPGKQM+IDAD+++GLI E+EA++RR ++ +EA
Sbjct: 119 LVIIQFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREA 178

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYG+MDGASKFVRGDAIAG++I +IN+VGGL++G+LQ G+++  AAE + LLT+GDGLV
Sbjct: 179 DFYGAMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLV 238

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           AQIPAL+IST+AG+IV+R ++  + G  ++ QL S+  V+ ++  ++ +LGL+  +P   
Sbjct: 239 AQIPALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFP 298

Query: 313 FLLFTAGLLGLAWWIRGREQK--------------APAEPKPVKM-----AENNTVVEAT 353
            L+  AGLL +A+  R  E +                A PK  K                
Sbjct: 299 SLILGAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEE 358

Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
            ++V   D++ +++GY LIP+ D  Q G+LL RI  +RK+ A E+G +   + IRD++ L
Sbjct: 359 VSEVLQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLL 418

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
               Y I ++GVE+G  +  P R LAIN G A   LPG  T +PAFGL A WI+ +LKE+
Sbjct: 419 SSNEYVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEE 478

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
           A  +GYT V+A +V ATHL+  I ++A E+ G +E + L+D +      L + L+P ++ 
Sbjct: 479 AIEKGYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLK 538

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFP 592
           +  L KVL  LL E+V IR++  I E+L E A    ++   L   VR +LGR I +    
Sbjct: 539 MHELKKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKS 598

Query: 593 GKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPV 647
              E+HV  LD  +E+ L ++++         LEP  ++ L+ +  ++L    M G  P+
Sbjct: 599 DDGELHVSALDPTIEKKLSESIRDSDSGRVIILEPEYSNILVQRISKSLENMMMKGFNPI 658

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           L+ +  +R   +RF  + +  + +++  E+  +  + +   +
Sbjct: 659 LICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNVNEIV 700


>UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A546_GEMAT
          Length = 695

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/692 (43%), Positives = 424/692 (61%), Gaps = 13/692 (1%)

Query: 5   AAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMF 64
           +A L +PAN    +   +A  ++++L ++++V+PLP  +LDL    +I LS++VLLV++ 
Sbjct: 3   SAALPIPANSAGAKKAEIAIALVVVLFIALIVVPLPPVLLDLCLAASIGLSLVVLLVSLQ 62

Query: 65  TQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFA 124
           T   L+F++FP +LL  TL R+ L+V+STR+IL E H     AGKV+EAFG F++GGN+A
Sbjct: 63  TTNPLDFSSFPALLLLLTLFRMGLSVSSTRLILSEAH-----AGKVIEAFGQFVIGGNYA 117

Query: 125 IGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKR 184
           +GIV+F+IL  INF+VITKGAGRIAEV ARF LD MPGKQMAIDADL+AGLI E EA+ R
Sbjct: 118 VGIVIFLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTR 177

Query: 185 RSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTL 244
           R E+ + ADFYG+MDGASK+V+GDAI GIL++++NIVGG+ +GV+Q GM +G AA +YT+
Sbjct: 178 RDEIARTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTI 237

Query: 245 LTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           LT+GDGLV Q+PAL+ISTAAG++VT  + +  +G  +  QL ++P  M ++A VLG   L
Sbjct: 238 LTVGDGLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFAL 297

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEP--KPVKMAENNTVVEATWNDVQLEDS 362
           +PG+P   FL   AG   LA      E +             E          D+   D 
Sbjct: 298 IPGLPMFPFLAMAAGAALLARTATKAETRRLELATISAPVEMEELPPPPDPMRDLLQIDP 357

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + +EVGY LIP++D  Q G+LL RI  +RK+ A E+G L P + IRD++ L    Y I +
Sbjct: 358 IELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKL 417

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
           +G E+   +  P   +A+N G+    + G  TVDP+FG+ A W+ SA + +A+  GY VV
Sbjct: 418 RGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVV 477

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           E +TVVATHL   +   A+EL GRQE Q++++ + +  P L E+++PG V+L+ LH+VLQ
Sbjct: 478 EPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQ 537

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E+VPIRD+ TILE L + A    DP  LT V R AL   I + +      V  I +
Sbjct: 538 RLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITI 597

Query: 603 DTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
              LE  L        +      L P     +L       +   + G P  L+   +LR 
Sbjct: 598 GGRLESALVGLFSPRSSQPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLRV 657

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688
            + R +   LP L V+S  EL     +    T
Sbjct: 658 GVRRLIEPVLPSLPVISLAELPAQITLSSVTT 689


>UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria
           RepID=LCRD_YERE8
          Length = 704

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/699 (31%), Positives = 388/699 (55%), Gaps = 31/699 (4%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +  + + +   +L+L ++ MMVLPLP  +LD+L   N+ +S+++L++A++    L+F+AF
Sbjct: 11  RIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILIAVNMTISVVLLMIAIYINSPLQFSAF 70

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P +LL TTL RLAL+V++TR+IL++     A AG++V  FG+F+VGGN  +GIV+F+I+ 
Sbjct: 71  PAVLLVTTLFRLALSVSTTRMILLQ-----ADAGQIVYTFGNFVVGGNLIVGIVIFLIIT 125

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ F+VITKG+ R+AEV ARF LD MPGKQM+ID D+ AG+I  +EA++RR+ + +E+  
Sbjct: 126 IVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIEKESQM 185

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           +GSMDGA KFV+GDAIAG++I+ +NI+GG+ +GV Q G++   A + Y++LT+GDG+V+Q
Sbjct: 186 FGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGDGMVSQ 245

Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +PAL+I+  AG+IVTRVS++   D+G  +  Q+ + P  ML+   +L L GL+PG P + 
Sbjct: 246 VPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPGFPTVT 305

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPK-----------PVKMAENNTVVEATWNDVQLED 361
           FL+    +    + +  ++ +     +                       A    +  ++
Sbjct: 306 FLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGRLGEQE 365

Query: 362 SLGMEVGYRLIPMVDFQQDG----ELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
           +  M V   LI +   QQ+      L   +  +R+    ++G   P +H+R N  +    
Sbjct: 366 AFAMTV-PLLIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGMGEGE 424

Query: 418 YRILMKGVEIGSGDAYPGRWLAIN--PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
           Y I ++ V +  G+   G  L            +P E            W+    +E+ +
Sbjct: 425 YLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYEKGEHLLPDQETFWVSVEYEERLE 484

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
                    S V+  HL+H++ ++A +  G QE + LL+++     +L ++ V  +V L 
Sbjct: 485 KSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKE-VQRIVPLQ 543

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
            + ++LQ L+ E + IR+MR+ILE + E    + D  +LT  +R +L R I  ++  G +
Sbjct: 544 RMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGNN 603

Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650
            +     D  +E  +  A++         L+P + + LL Q ++ +     + + PVL+V
Sbjct: 604 ILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTESLLEQVRKTIGDLSQIQSKPVLIV 663

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +R  + + +      L VLS  EL+   +I+    +
Sbjct: 664 SMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702


>UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4
           RepID=C9R9X8_AMMDK
          Length = 684

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/633 (43%), Positives = 397/633 (62%), Gaps = 7/633 (1%)

Query: 57  MVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGH 116
           ++LLV +FT   L+F+ FPT+LL  TL RLAL VA+TR+IL     G A+AG V+ AFG 
Sbjct: 54  VILLVTLFTVEPLQFSVFPTVLLVLTLFRLALEVAATRLIL-----GQASAGAVIHAFGS 108

Query: 117 FLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLI 176
           F+VGG++ +G V+F+I+ ++ F+VIT GA R+AEV ARF LD +PGKQMAID D NAGLI
Sbjct: 109 FVVGGSYVVGFVIFLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLI 168

Query: 177 GEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMG 236
            E EA++RR  + +EADF+G+MDGA+KFVRGDAIA ++I++INI+GG +VG++  GM + 
Sbjct: 169 TEAEARERRRRLQREADFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLT 228

Query: 237 HAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSA 296
            A  +YTLLTIG+GLV QIPAL++ST+AGV+VTR   +   G +   QL + P ++ ++A
Sbjct: 229 TALRTYTLLTIGEGLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAA 288

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND 356
           A+  LLGLVPG+P+L+ L        L +++    +K      P    +           
Sbjct: 289 AIFILLGLVPGLPHLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRTEPENVLT 348

Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
               + L +E+GY L+P+   +Q G+LL R+ ++R++ A E+G     + IRDN+ L P 
Sbjct: 349 YFQVEPLEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPPN 408

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQI 476
            Y   ++G+E   G+  PG +LA++P      L G AT +P FGL A WI  A KE+A+ 
Sbjct: 409 VYLFRLRGIEAARGELMPGYYLAVSPMGE-AKLEGIATKEPVFGLPAWWISPADKEKAEA 467

Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536
            G+TVVE S V+ATHL+  I Q+A  L GRQE ++LLD + ++ P L E+LVPG++ L  
Sbjct: 468 AGFTVVEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLGE 527

Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596
           + KVLQ LL+E+VPI+D+ +ILE LA+ A +  DP  L    R AL R ITQQ+    ++
Sbjct: 528 VQKVLQGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYA-RDNK 586

Query: 597 VHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           + V+ L    E  L QA + G  LEP    RLL +  +A+      G  PV+L     R 
Sbjct: 587 LSVLTLHPRWEERLSQAKEEGKVLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGARL 646

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           LL R +    PQ+ V+S  E+     +    T+
Sbjct: 647 LLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679


>UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia
           RepID=B1ZR28_OPITP
          Length = 712

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/699 (39%), Positives = 417/699 (59%), Gaps = 32/699 (4%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
           +   L     + + + +++LP+P  +LD  F  NI LS++VLL  ++ +   EF++FPT+
Sbjct: 2   KRADLVLTAGLFITVLLLILPIPTVLLDFFFALNIGLSMLVLLAIIYIKDPPEFSSFPTL 61

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           LL  TL RLALN++STR++L++G+     AG+V++AFGHF++ GN+ +G VVF+ILV+IN
Sbjct: 62  LLALTLFRLALNISSTRLVLVKGY-----AGQVIDAFGHFVIQGNYIVGAVVFLILVVIN 116

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGAGRIAEV ARF LD +PGKQMAIDA+LNAG+I E +A  RR +V +EADFYG+
Sbjct: 117 FVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQKEADFYGA 176

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
           MDGASKFVRGDAIAGI+I ++N++GG  +GVLQ G+S+G + + +TLL+IGDGLV+QIP+
Sbjct: 177 MDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGDGLVSQIPS 236

Query: 258 LVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           LV+S AAGV+VTR S + ++G Q+  Q+F  P  M ++A +L   G++PGMP L F    
Sbjct: 237 LVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMPLLPFAGLA 296

Query: 318 AGLLGLAWWIRGREQKA----------------------PAEPKPVKMAENNTVVEATWN 355
           A    L   ++ +E K                        A       A   +       
Sbjct: 297 AFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPASGPTEDVR 356

Query: 356 DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP 415
            +   D   +E+GY L+ + + +  G+LL R+  +RK  A+E G + P V +RDN++L+P
Sbjct: 357 KLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAVRDNLELEP 416

Query: 416 ARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQ 475
             YR L++G  +  G  +P RWLA+N   +   L G  T +P F L A WI+   K+ A+
Sbjct: 417 NDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWIDEPEKKTAE 476

Query: 476 IQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLT 535
           I GYTVV+ ++V+ THL+  +  +A  L GRQE Q L+D + Q  P L  +L+P +VTL 
Sbjct: 477 INGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAELLPDLVTLG 536

Query: 536 TLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKD 595
            + +VLQNLL E + I ++  ILE + + A +  +P +L+ ++R  LG     ++     
Sbjct: 537 IIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFVPEFEVRPG 596

Query: 596 EVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLV 650
            V  + +D   E+ L   +Q         L+P     +L +    ++     G P VL+V
Sbjct: 597 VVRAVTVDPRFEQWLGTKVQRSPTEVGLALDPATTRHVLDELNRRIAELTAQGHPTVLVV 656

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +  +R  L RF   S P+L VL+  EL     I     +
Sbjct: 657 SSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695


>UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria
           RepID=FLHA_HELPJ
          Length = 733

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/726 (40%), Positives = 431/726 (59%), Gaps = 40/726 (5%)

Query: 2   SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
           S LA     P   +  Q + LA  + ++ IL+++++PLP F+LD L T +IALS++++L+
Sbjct: 6   SKLAFKKTFPVFKRFLQSKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILI 65

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            ++  +  +F+AFPT+LL  TL RLALNVA+TR+IL +G+ G +A   ++ AFG F V G
Sbjct: 66  GLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILTQGYKGPSAVSDIITAFGEFSVSG 125

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N+ IG ++F ILV++N +V+T G+ R+ EV ARF LD MPGKQMAIDADLN+GLI + EA
Sbjct: 126 NYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEA 185

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           KKRR+ ++QEADFYG+MDGASKFV+GDAIA I+I +INI+GG LVGV Q  MS+  +A +
Sbjct: 186 KKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSAST 245

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +T+LTIGDGLV QIPAL+I+TA G++ TR   + ++D   +++ QL +    +++  A L
Sbjct: 246 FTILTIGDGLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANL 305

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRG-----------------------------R 330
            L   +PG+P           L +AW I                               +
Sbjct: 306 LLFATIPGLPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSK 365

Query: 331 EQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSI 390
            +      K     E     E   ++V   + L + +GY+LI + D +Q G+LL RIR I
Sbjct: 366 IKPHAPTTKTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGI 425

Query: 391 RKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP 450
           RKK A + GFL P + IRDN+ L P  Y I +KG+ IG G   P ++LA+N G     + 
Sbjct: 426 RKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIE 485

Query: 451 GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQ 510
           G  T +PAFG++A+WI++  KE+A IQGYT+++ STV+ATH + L+ ++A +   + E +
Sbjct: 486 GIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVK 545

Query: 511 QLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP-IQS 569
            LL+R+A++ P + E+     +    +  VLQ LL EK+PI+DM TILET+ + AP +Q+
Sbjct: 546 SLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQN 603

Query: 570 DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGL 624
           D + LT  VR  L R IT  +      +  +   T  E+ LL  L+  G      L  G 
Sbjct: 604 DVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE 663

Query: 625 ADRLLAQTQEALSRQEMLGAPPVLL-VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHI 683
             +L+    E   +    G  PV+L V   LR  LS  + ++   +VVLS+ EL  N + 
Sbjct: 664 LQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNF 723

Query: 684 RMTATI 689
               TI
Sbjct: 724 EALGTI 729


>UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM
           13855 RepID=Q2RZE9_SALRD
          Length = 693

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/678 (43%), Positives = 428/678 (63%), Gaps = 16/678 (2%)

Query: 24  GPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTL 83
               I+ IL MMV+PLP+++LDL    +IALS+ VLL + + +R LEFA FP +LL TTL
Sbjct: 1   MAGAIVAILFMMVVPLPSYLLDLFLATDIALSLGVLLTSFYAERPLEFAIFPGLLLTTTL 60

Query: 84  LRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITK 143
            RL+LNVASTR+IL     G A AG ++ AFG F+V GN+ +G ++F++LVIINF+VITK
Sbjct: 61  FRLSLNVASTRLIL-----GNAEAGALINAFGSFVVAGNYVVGAIIFLVLVIINFVVITK 115

Query: 144 GAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASK 203
           G  RI+EV ARF LD MPGKQMAIDADLN+GLI E EA++RR EVT+EADFYG+MDGA+K
Sbjct: 116 GTERISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVTEEADFYGAMDGATK 175

Query: 204 FVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTA 263
           FVRG+A+AGILI  IN+VGGL++GV Q  M +G AA ++ LL+IGDGLV+QIPAL++STA
Sbjct: 176 FVRGEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGDGLVSQIPALMVSTA 235

Query: 264 AGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           AG+IV+R S ++  +  +M  QL   P  +L++   LG++G VPG+P + F L +AG+L 
Sbjct: 236 AGIIVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGLPIIPFWLLSAGVLL 295

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEA----TWNDVQLEDSLGMEVGYRLIPMVDFQ 378
           L +     ++         +        E       +D+ L D L +E+GY LI +VD  
Sbjct: 296 LWYLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLELEIGYGLISLVDPD 355

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           Q G+LL R++ +RK+ A+EMG + P V IRDN+D+   +Y I ++G  IG G   PG  L
Sbjct: 356 QGGDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRGNPIGEGQVMPGYKL 415

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A+ P        G    DP FGL A+W+      +A+  G TV+E   V++THL   + +
Sbjct: 416 ALLPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEPPAVISTHLLEELRK 475

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           +A  L  RQE +++LD+V +  P L ++LVP +++L ++ KVLQ LL+E++PIRD+ TIL
Sbjct: 476 NAYRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRLLEERIPIRDLVTIL 535

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           ETLA+HA        LT   R AL   IT+++   +  +    +D  LE+ LL+  + GG
Sbjct: 536 ETLADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDPALEQHLLETAESGG 595

Query: 619 ------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
                 GL+P  AD L+    E  +        P+LL++  LR  + +FL   +  + VL
Sbjct: 596 LDANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVLRATVYQFLDPMVSDITVL 655

Query: 673 SNLELSDNRHIRMTATIG 690
           S  +L+ +  + +   + 
Sbjct: 656 SYNDLTPDAPVDIVDQVS 673


>UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria
           RepID=Q01PP7_SOLUE
          Length = 699

 Score =  731 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/683 (42%), Positives = 419/683 (61%), Gaps = 10/683 (1%)

Query: 12  ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
            +L       LA P+ +L I+  ++ PLP F+LDLL   +I +S+ VL+V+++  R +EF
Sbjct: 21  KSLPLDTLGQLAVPLAVLAIVIALITPLPGFLLDLLIVVDILVSVTVLMVSLYLVRPVEF 80

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
            +FPT LL  TL RLALNV+S+R+IL+ G+TG AAAG+V+ AFG F+VGGN+ IG V+F+
Sbjct: 81  TSFPTTLLLLTLFRLALNVSSSRLILLNGNTGTAAAGEVIGAFGSFVVGGNYVIGAVIFL 140

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           +L+ I ++VI  GA RI+EV ARF LD +PGKQM+ID DLNAGLI E EAK+RR  +  E
Sbjct: 141 VLIAIQYVVINHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALATE 200

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
           A+FYG+MDGAS+F + DA+A ILI  INI+ G L+GV QHGM    A E+YT+LTIGDGL
Sbjct: 201 AEFYGAMDGASRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGDGL 260

Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           V  IPAL+IS + G+IVTR S++  +G +   Q+  N   +LL+A VL  L  +PGMP L
Sbjct: 261 VTVIPALMISISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMPKL 320

Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRL 371
            FL+   G     W +R  E    A P   +        + +   +   + L +EVG  L
Sbjct: 321 PFLVLGFGAGAGGWRMRKTELAQIAAP--PEDTGKPAPAKDSVESLLRVEPLAIEVGLGL 378

Query: 372 IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           I +V+  Q+  LL RI +IR++ A ++G+L P V + DN+ L+   Y I +KGVEI   +
Sbjct: 379 IGLVEGAQESPLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGVEIARYE 438

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
              G  LAI  G A+  L G+AT DPAFG+NA WI +   ++A+  GYTVV++ +V+ TH
Sbjct: 439 LPQGCELAIATGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSVSVLGTH 498

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L+ +I ++A ELF RQ+A++LLDRV  E PK+ ED+VP ++ L+++ +VLQNLL E+V I
Sbjct: 499 LSEIIRRYAHELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLLRERVSI 558

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           RD  +ILE L E      +P  LT  VR A+ RA+ + +     ++    +D  +E  + 
Sbjct: 559 RDAVSILEALGEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPAIEHAVE 618

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
            A++ G       L P     +L +    +   E    P V + +   R  L +    ++
Sbjct: 619 AAVEHGEQNSHIQLAPQHIREMLNRISARIQSPE---TPVVAITSSGARYFLRQIAEPTM 675

Query: 667 PQLVVLSNLELSDNRHIRMTATI 689
           P L  L++ E+     ++    I
Sbjct: 676 PNLFFLAHNEVPPGVRVQSLGNI 698


>UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus
           F0268 RepID=C2KYZ6_9FIRM
          Length = 718

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 237/686 (34%), Positives = 392/686 (57%), Gaps = 41/686 (5%)

Query: 43  ILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT 102
           ++D+    N+A+S+M+L++ M  +  LE + FP++LL TTL RL +NV++TR IL  G  
Sbjct: 29  MVDVAIVVNMAISMMILVITMTIREPLELSIFPSLLLITTLFRLGINVSTTRNILTNG-- 86

Query: 103 GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPG 162
              ++G +++AFG F+V GN  +G+++++I+V++ F+VITKGA R++EV ARF LD MPG
Sbjct: 87  --GSSGAIIKAFGDFVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPG 144

Query: 163 KQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVG 222
           KQMAIDADL++G+I E +A++RR ++ +E+DFYGSMDGA+K V+GD +  ++   IN+VG
Sbjct: 145 KQMAIDADLSSGMITEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVG 204

Query: 223 GLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMV 282
           G ++G++Q G  +     +Y++ T+GDGLV QIP+L+IS + G+IVTR  ++  + E + 
Sbjct: 205 GSIIGIVQSGQPVATVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVS 264

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKP-- 340
            Q    P  M+++   +G+L L+PGMP L  L    G +   +++  R ++ P   +   
Sbjct: 265 KQFTQQPRSMMITGIAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEG 324

Query: 341 --------------VKMAENNTVVEATWND----------VQLEDSLGMEVGYRLIPMVD 376
                             E  +    +  D          +   + + M+ GY LIP+ D
Sbjct: 325 EGLLPSMEAPPQPQEAQGEAASAPAESEEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLAD 384

Query: 377 FQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
               G L+ RI   R+++AQ++GF+ P  + +RD+  L    Y I +KG EI  G+    
Sbjct: 385 ESVGGRLIQRIVIFRRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTD 444

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
             LA+ P      + G  T++PA+G+ + WI    +E+A++ GYTV++  +V+ +HL+  
Sbjct: 445 YVLALEPDDVEDAIDGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSET 504

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           I +HA EL  RQE  +L++ + +  P+L E+  PGV++   L KVL  LL E V I+D+ 
Sbjct: 505 IKRHAYELMTRQEVVRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDLE 564

Query: 556 TILETLAEHAPIQ----SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
           TI+ET+ E          D  ++   VR +L R IT+ +      + VI LD  LER ++
Sbjct: 565 TIVETMFECISETGLPVKDTDQIVEKVRASLKRTITRMYC-EDGNMKVITLDAGLERTMV 623

Query: 612 QALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
            +L  G       L P L   L+ Q  E   +   L +PP++L +  +R      + +  
Sbjct: 624 NSLARGENGLYLALSPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFY 683

Query: 667 PQLVVLSNLELSDNRHIRMTATIGGK 692
           P + VLS  E++ N  I+   ++  +
Sbjct: 684 PNVRVLSFNEVASNVQIQAIGSLRLE 709


>UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria
           RepID=B5ZM53_GLUDA
          Length = 731

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/699 (39%), Positives = 426/699 (60%), Gaps = 16/699 (2%)

Query: 4   LAAMLRLPANLKSTQWQ------ILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57
           L+A        ++T W+       +   + ++++L+++++PLP FILD+  + +I  S++
Sbjct: 37  LSAETLRSGGWRATSWRSLVPGTDVGLALGVVVLLAILIIPLPTFILDMGLSLSITSSVL 96

Query: 58  VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117
           VL+VA+F +RTL+F +FPT+LL TTLLRL+L +A+TR+IL  G  G  AAG VV AFG F
Sbjct: 97  VLMVALFLERTLDFTSFPTLLLLTTLLRLSLEIATTRLILSHGSEGTYAAGHVVAAFGGF 156

Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177
           L+GG+  IG +VF IL+++NFMVITKG+GRIAEV ARF LD MPGKQMAIDADL++G I 
Sbjct: 157 LMGGDLFIGGIVFCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAIN 216

Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237
           E  A+ +R E+  E+ FYG+MDGA+KFVRGDAIAG++I  INIVGGL +G+L+H M +  
Sbjct: 217 ERTARAKRKELEDESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSE 276

Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAA 297
           AA ++T LT+GDGLV+QIPAL++STAAG++VT+  +D      +V QL  NP  + ++  
Sbjct: 277 AASTFTTLTVGDGLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGG 336

Query: 298 VLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDV 357
           +  L  ++PG+P L FL+   G    AW    R +    +        +        +++
Sbjct: 337 LSALFAIMPGLPALPFLVIAVGAGIGAWM---RHKTPVKDGDGDVTQISPQPTAPPISEM 393

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
              D L +E+G+ L+P+   +   +L  +I+++R+  A E+GF+ P V I+DN+ L    
Sbjct: 394 LKLDLLRLELGFGLLPLTSGEN-PQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDN 452

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
           Y I +K +EIGSG+  PG+ +A++P   A  LPG+ T +PAFGL A+WI+ +LK +A   
Sbjct: 453 YVIKLKEIEIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAM 512

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
             T+V+ ++V+ THL+  + Q+  +L      Q LLD + +E  KL  DL+P  V L+T+
Sbjct: 513 KCTIVDPASVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTI 572

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDE 596
            +VLQ+LL E+V IRD+ TILE++ E   +       LT  VRV L R I      G   
Sbjct: 573 QRVLQSLLAERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGY 632

Query: 597 VHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651
           + +I L    E   +  + G        + P + ++ + + +E  +     G  PV++V+
Sbjct: 633 IPMITLSAEWEAEFMAHITGQADDRRLAMPPSMLNKFVGKLREVFNTVSASGEIPVVVVS 692

Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
             +R  +   + R  P + VLS  E+     I+  ATI 
Sbjct: 693 TPVRDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATIT 731


>UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria
           RepID=FLHA_CAUCR
          Length = 700

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/693 (39%), Positives = 417/693 (60%), Gaps = 6/693 (0%)

Query: 3   NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62
           N ++M    + L       +   + ++ I+ ++++P+PA +LD+L   ++  S+++L+ A
Sbjct: 8   NASSMPSAKSLLDGLMRGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTA 67

Query: 63  MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122
           +  ++ LEF +FPT+LL TTL RL LN+ASTR+IL  G  G   AG V+EAFGH ++ GN
Sbjct: 68  ILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILSHGQEGTGGAGAVIEAFGHLMMQGN 127

Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182
           F IG++VF+IL+++NFMV+TKG+GRIAEV ARF LD MPGKQMAIDADL+ GLI +DEAK
Sbjct: 128 FVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAK 187

Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242
            RR E+ QE+ F+G+MDGASKFV+GDAIAG++I  INI+GG+++GV+QH M  G AA +Y
Sbjct: 188 IRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTY 247

Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302
           T++TIGDGLV+QIPAL+IS AAG++V++   +    + +  QL  NP  + + +A  G++
Sbjct: 248 TIMTIGDGLVSQIPALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGII 307

Query: 303 GLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPA-EPKPVKMAENNTVVEATWNDVQLED 361
            L+PGMP   F         LA+      +K  A +P  ++ A  +   E   +     D
Sbjct: 308 ALIPGMPIFPFAAMALAAGALAYKRVQDAKKPKALDPADLEAAAPSEPEEEPISASLAID 367

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            + +E+GY L+ +++     +L  +IR++RK  A E GF+ P V I DNM L    Y I 
Sbjct: 368 DVKIELGYGLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIR 427

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           +K +E G+G+   G  + ++P      LPGE   +PAFGL A WI   L+E+A  +GYTV
Sbjct: 428 IKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTV 487

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           V+ +TV+ THL  ++ ++ A+L    E Q+LL  + +   KL +DL+PG VT TT+ +VL
Sbjct: 488 VDPATVLTTHLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVL 547

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q+LL E+V IRD+  ILE + E AP  +   +L   VR  L R +          + +I 
Sbjct: 548 QSLLRERVSIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIIT 607

Query: 602 LDTPLERLLLQAL-----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           L    E+   +AL          L P      +   +++  R  + G  PVLL +  +RP
Sbjct: 608 LSADWEQAFAEALIGPGDDKQLALPPSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRP 667

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            +   + R   Q VV+S  E+     ++    +
Sbjct: 668 YVRSIIERFRGQTVVMSQNEIHPRARLKTVGMV 700


>UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira
           RepID=Q04SD6_LEPBJ
          Length = 705

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/683 (37%), Positives = 397/683 (58%), Gaps = 19/683 (2%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K      +   +  + I++M+V+PLP  ILD+L   ++A+ ++VLL ++      +F+ F
Sbjct: 4   KWWNQSDVILGVGAVAIVAMLVIPLPGLILDILIIVSLAIGLLVLLTSLSVNEPADFSIF 63

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG-----NFAIGIVV 129
           P++LL TTL RLALNV++TR IL +G    A    V++AFG F++G       + +G ++
Sbjct: 64  PSLLLITTLYRLALNVSTTRQILSKG---PAMNSHVIDAFGSFIIGSESGLSKYVVGFII 120

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F+ILV++  +VITKGA RI+EV ARF LD +PGKQMAID +L++G I E+EAKKRR  + 
Sbjct: 121 FIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIE 180

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            E DFYGSMDGASKFV+GD  AG++I  IN++GG+++G    G S   A E+Y   TIGD
Sbjct: 181 AEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGD 240

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           GLV+QIPAL+ + A G+IVTR  ++ D+  Q  +QLFSN  V+ + A  LG    +PG+P
Sbjct: 241 GLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLP 300

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369
            +  ++ +AG+  L + +    ++     +  +           + +    D + +EVGY
Sbjct: 301 FIPLVILSAGIAYLGYSLEQTVKEQLESIEKKEKESGQDRKPKDFYEELRTDPIEIEVGY 360

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
            LIP+VD  Q G LL +I ++RKKFAQ+ G + P V I DN+DL P  Y I + G E+G 
Sbjct: 361 HLIPLVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGTEVGI 420

Query: 430 GDAYPGRWLAIN-PGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
               P + +A+N     A ++ GE  ++P+FG  A WI S  K +A+ +GYTVV+ASTVV
Sbjct: 421 STVKPDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDASTVV 480

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDL-VPGVVTLTTLHKVLQNLLDE 547
            THL  L++ HA+ L GR+E ++LLD      P L  +L       L  + +VLQNLL E
Sbjct: 481 VTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQNLLRE 540

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
            + IR++  ILE++A +     +P+ LT +VR ++ R + + +     ++ VI L++ + 
Sbjct: 541 GLGIRNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLESRIL 600

Query: 608 RLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
             L +++            L P    +L+    E      M G  P+ +VN  +R   S 
Sbjct: 601 DRLNKSITQDRIENRDVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRDVRLPFSY 660

Query: 661 FLRRSLP--QLVVLSNLELSDNR 681
            L +  P     VL+  E+  + 
Sbjct: 661 LLAKEFPPRNFGVLAYEEIHSSV 683


>UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae
           RepID=A3ZZP0_9PLAN
          Length = 695

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/686 (42%), Positives = 425/686 (61%), Gaps = 11/686 (1%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
              + + L  P+ I+  + ++++PLP ++++LL T NI   +++LL  ++ Q  LEF  F
Sbjct: 7   ALERIRDLILPVGIIASVLVILVPLPNWLMNLLLTANITAGVIILLTTIYVQTPLEFNVF 66

Query: 75  PTILLFTTLLRLALNVASTRIILMEG-HTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           P++LL TTL RL LNVA+TR+IL +    G  AAG V+E+FG F+ G   A+GI++F+I+
Sbjct: 67  PSLLLATTLARLVLNVATTRLILTKAAEDGMDAAGGVIESFGEFVAGDKIAVGIIIFIII 126

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
           ++I FMVITKGA RI+EV ARF LDGMPG+QMAIDADLNAG+I E EA+ RRSE+TQ+AD
Sbjct: 127 IVIQFMVITKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQAD 186

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
           F+G+MDGASKFVRGDAIAGI+I +INIVGG ++G LQ GMS+  AAE YT LTIGDGLV+
Sbjct: 187 FFGAMDGASKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVS 245

Query: 254 QIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           Q+PA +IS AAG++VTR S   ++  + V QL S P  ++++ A LGLL +  G+P +  
Sbjct: 246 QVPAFLISLAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPL 304

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKM----AENNTVVEATWNDVQLEDSLGMEVGY 369
           L    G LG+A++I+ ++++  A+ +  +      E     E    D    D + ME+G 
Sbjct: 305 LTLCGGCLGIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGV 364

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
            L+ +    + G+LL R+  +R+  A E+G + P V IRDNM L   +YRI +    +  
Sbjct: 365 GLVRLAAPDRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAE 424

Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489
              YP R LAI    + G LPGE T DPA+   A+WIE  L+ QA++ GYT+VE S+V+A
Sbjct: 425 NTIYPDRLLAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLA 484

Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549
           THL  +  +HA EL  R   + LLD +  E P + ++L+PGV+ L  +  VL NLL E+V
Sbjct: 485 THLQRVAKKHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEV 544

Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERL 609
           PIR +  ILETL +HA    D   LT  VR  L R I  ++   ++++ V+ LD  ++  
Sbjct: 545 PIRQLAIILETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDR 604

Query: 610 LLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665
           +   +    G    + P   +         + +   +G PP++LVN  +RP L +     
Sbjct: 605 IAAGIDTERGPYARMSPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNH 664

Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691
           +P L+VLS+ E++ +  I     I  
Sbjct: 665 IPDLIVLSHNEVTRDTLIESVGIISD 690


>UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms
           RepID=FLHA_BRUME
          Length = 723

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/695 (36%), Positives = 410/695 (58%), Gaps = 12/695 (1%)

Query: 6   AMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFT 65
           A  +     K      +   + I++IL+++ LP+PA +LD+   F+IA S+++L+VA++ 
Sbjct: 31  AAAKPFIKGKFLTGSDIGLAVGIIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWI 90

Query: 66  QRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAI 125
           QR L+F+AFPT+LL  T++RL+LN+A+TR+IL  G+ G  AAG V+  F  F++GG+F I
Sbjct: 91  QRPLDFSAFPTVLLIATMMRLSLNIATTRVILTHGNEGYLAAGHVIHGFSQFVMGGDFVI 150

Query: 126 GIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRR 185
           G+VVF IL+I+NF+VITKGA RIAEVGARF LD +PGKQMAIDADL++GLI E EA++RR
Sbjct: 151 GLVVFAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRR 210

Query: 186 SEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLL 245
            E+ +E+ F+GSMDGASKFVRGDAIAG++I  +NI GG+++G  +HGM +  AA+ +T L
Sbjct: 211 RELEEESSFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKL 270

Query: 246 TIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305
           ++GDGLV QIPAL++S AAG++V++  T     + +  QL + P  +L++A +L +LG++
Sbjct: 271 SVGDGLVTQIPALIVSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVM 330

Query: 306 PGMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDS 362
           PG+P   F L    +  +       + R+++A A     K  E       +       + 
Sbjct: 331 PGLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQ 390

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + + +G +L   +   Q+ EL  R+  +R+KFAQE GF+ P + + D++ L P  YRI +
Sbjct: 391 IELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKI 449

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
            G  + S +   G  L +       ++PGE   +PAFG+ A  +        + +GY  V
Sbjct: 450 HGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTV 509

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
           +  +V+ THL+ ++  + A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  VL+
Sbjct: 510 DNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLK 569

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL E++ IR++  ILE +AE AP+   P  +   VR+ + + I          ++V+ L
Sbjct: 570 LLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRL 628

Query: 603 DTPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALR 655
               + +  Q+L+           ++P L ++   +   A+ +    G   VL+ +   R
Sbjct: 629 GNRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEAR 688

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           P +   + R    L VLS++E++    ++    I 
Sbjct: 689 PYIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 723


>UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria
           RepID=A1T0L5_PSYIN
          Length = 695

 Score =  718 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/698 (40%), Positives = 433/698 (62%), Gaps = 19/698 (2%)

Query: 6   AMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFT 65
            +L+   N+K +    LA P  +L+IL+M++LPLP F+LD+ FT NI L+I+VLLV+  T
Sbjct: 2   ELLKKFKNIKLS----LAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTT 57

Query: 66  QRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAI 125
           +R L+F+ FPT+LL  TL+RL LNVASTRI+L+EGH G  AAG V++AFG  ++GGN+ +
Sbjct: 58  KRVLDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVV 117

Query: 126 GIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRR 185
           G+VVF+IL+IINF+VITKG  RI+EV ARF LD +PGKQMAIDADLNAGLI +++AK RR
Sbjct: 118 GMVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRR 177

Query: 186 SEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLL 245
            E   EA+FYGSMDGASKFVRGDAIAG+LI+ IN++GG+L+G+  H MS   + +++ LL
Sbjct: 178 QETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALL 237

Query: 246 TIGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           TIGDG+VAQIP+L+++T+A VIVTRVS +D D+ + +  Q+ S PSV+  SA V+ ++GL
Sbjct: 238 TIGDGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGL 297

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA--TWNDVQLEDS 362
           VP MP+L FL+F A L  + W     ++++  E     +    +  E    W  V   + 
Sbjct: 298 VPNMPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEP 357

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + + +G++L+ +++ +    LL  I+  RK  ++E+GFL P V IRDN+ L+P  Y I +
Sbjct: 358 ITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFI 417

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
            G E+  G    G  +A++   + G++ G    DPA+ + A+WI    K  A   GY V+
Sbjct: 418 DGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVI 477

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
             + V+ATH+N ++S + A +F   + + + D++    P+L+E L   V     L  +++
Sbjct: 478 SLADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQ-IIK 536

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
           NLL ++VP+++ + I  T+ +      DP  +++ VR AL R I     P    + +  L
Sbjct: 537 NLLIDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVL 596

Query: 603 DTPLERLLLQALQGGGG-----------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVN 651
            + L+ +L  A+                ++P L  +L         +    G  P+LLV+
Sbjct: 597 SSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVS 656

Query: 652 HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +RP++S+F R     L+VLS  E++D+  I     +
Sbjct: 657 PTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694


>UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YIY8_THEYD
          Length = 683

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/676 (46%), Positives = 464/676 (68%), Gaps = 8/676 (1%)

Query: 19  WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78
              +   + I+LIL  M++P+P F+LDL  T +I LSI+++LVA + ++ L+F+ FP++L
Sbjct: 8   RSDVLVAVGIILILIFMIVPIPPFMLDLSLTMSITLSILIILVASYVRKPLDFSVFPSVL 67

Query: 79  LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138
           L  TL+RL+LN+ASTR+IL  G  G  AAGKV++AFG F+V GNF +G++VF+ILVIINF
Sbjct: 68  LIATLMRLSLNIASTRLILTRGELGTEAAGKVIKAFGEFVVSGNFVVGLIVFLILVIINF 127

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           +VITKGAGRIAEV ARF LD MPGKQM+IDADLNAGLI E EA++RR E+++EADFYG+M
Sbjct: 128 IVITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEISREADFYGAM 187

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGASKF+RGDAIA I+IM+INI+GG+L+GVLQ GM +G A ++Y +LTIGDGL AQ+PAL
Sbjct: 188 DGASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGDGLAAQVPAL 247

Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318
           + STAAG++V+R +T+ ++G+ ++ QLF NP  +  ++ VL LLGL+PG+P+L F++   
Sbjct: 248 ITSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLPHLPFIIIAV 307

Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378
               +A+ +  +E+K      P  + E    +EA    +   D + +E+GY LIP+V+  
Sbjct: 308 VSGAIAYLMISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISLEIGYNLIPLVEG- 366

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
            +  L+ RIRS+RK+ A EMG++ P +HI+DN+ L+P++Y IL+KGVEI + +   GR+L
Sbjct: 367 -ESSLVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGVEIATSEIILGRFL 425

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           AI        + G  T DPAFG++A+WIE     +AQ+ G+TVV+AS+V+ THL  ++  
Sbjct: 426 AIGARPGQD-IDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDASSVIVTHLREVLKN 484

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           +  EL G+QE Q+LLD +A+  P++ +DL+P ++TL+ + KVLQNLL E+V I+D++TIL
Sbjct: 485 YGYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLLRERVSIKDLQTIL 544

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           ETL+E+A +  DP  LT  VR AL R IT+        +  I  +  LER  +++LQ   
Sbjct: 545 ETLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPSLERTFIESLQTTP 604

Query: 619 -----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
                  +P L ++ +   ++      + G  PVL+ + ++R  + R + R  P L VLS
Sbjct: 605 QGINFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIRRFIKRAIERIAPSLPVLS 664

Query: 674 NLELSDNRHIRMTATI 689
             E++    I M  T+
Sbjct: 665 PQEIAPGVKILMFGTV 680


>UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria
           RepID=Q1D9J0_MYXXD
          Length = 707

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/712 (36%), Positives = 404/712 (56%), Gaps = 31/712 (4%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
           M    +N   +++  +   ++++ I+ MM++PLP  +LD+L T NI++S+++LLV+++  
Sbjct: 1   MAATNSNSFLSKYSDIVLAVVVVAIVGMMIVPLPTLLLDVLLTLNISISVVLLLVSLYVP 60

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
             L  + FPT+LL TT+ RLAL +++TR+IL+ G       G+VV AFG+F+V GNF +G
Sbjct: 61  AALHLSVFPTLLLITTMFRLALTISTTRLILLTGDP-----GEVVVAFGNFVVQGNFVVG 115

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
            ++F+ILVI+NF+VI+KG+ R+AEV ARF LD MPGKQM+IDADL AG I +D+ KK+R 
Sbjct: 116 AILFIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRR 175

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
           ++ +E+  +G+MDGA KFV+GDAIA I+I V+NIVGGL++GV Q GMS G AA+ YTLLT
Sbjct: 176 DLERESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLT 235

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLG 303
           IGDGLV  IPA+++ST AG+IVTRV+ +++   +G  M +QL + P  + ++A +L +LG
Sbjct: 236 IGDGLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLG 295

Query: 304 LVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE---------NNTVVEATW 354
           LVPG+P + F L   G    AW +  ++Q+A          E              EA  
Sbjct: 296 LVPGLPKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALN 355

Query: 355 ND----VQLEDSLGMEVGYRLIPMVDFQQDGE--LLGRIRSIRKKFAQEMGFLPPVVHIR 408
            D    + +   + +EV   L+P VD +QD    L   I  +R     E+G   P V  R
Sbjct: 356 PDSELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRAR 415

Query: 409 DNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWI 466
            N  L P  Y+I +  V + +G A  G  L  +         + G   V+PA    A W+
Sbjct: 416 GNGSLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWV 475

Query: 467 ESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTED 526
               ++  +  G T  +    +  H   ++ ++A E  G QE Q +L+++ +  P + ++
Sbjct: 476 PEQYRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKE 535

Query: 527 LVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAI 586
           +VP VV +  L  +LQ L++E++ IRD+R IL+ LAE+  +++D   LT  VR A  R I
Sbjct: 536 VVPKVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYI 595

Query: 587 TQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEM 641
           + ++  G   + V  LD  +E  +  +++         LEP LA  ++   +        
Sbjct: 596 SHKYARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLALEPELAQEIVQAVRSECGHLPP 655

Query: 642 LGAPPVLLVNHALRPLLSRFLRRSL-PQLVVLSNLELSDNRHIRMTATIGGK 692
               PV+L    +R  + + L     P   VLS  ELS   +I+  A I  +
Sbjct: 656 SAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARISTR 707


>UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales
           RepID=A5V5S8_SPHWW
          Length = 715

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/677 (45%), Positives = 443/677 (65%), Gaps = 9/677 (1%)

Query: 23  AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82
             P+  L+++ +MV+P+P+F+LD+ F  NI +S+ VL+VA+   + L+F++FPT+LLF T
Sbjct: 20  ILPLATLMLVGLMVIPVPSFVLDMGFIANIMISLAVLMVALNAAKPLDFSSFPTVLLFAT 79

Query: 83  LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142
           LLRL+LNVASTR++L++GHTG AAAG V+E+FG+FL+GG++A+G+ VF IL++IN +VIT
Sbjct: 80  LLRLSLNVASTRVVLVDGHTGPAAAGHVIESFGNFLIGGDYAVGLFVFGILMVINLVVIT 139

Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202
           KGAGR++EV ARF LD MPGKQMAIDADLNAGL+  +EAK RR EV  EADFYGSMDGAS
Sbjct: 140 KGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEADFYGSMDGAS 199

Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262
           KFV+GDA+AG+LI+VINI GGL++G L HG+S+  AA +Y +L IGD LVAQ+PAL++S 
Sbjct: 200 KFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALVAQVPALLLSI 259

Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           AA  IVTRVS+  D+  Q+ +Q F +       AA+LGLLG+VPGMP+++ L   A    
Sbjct: 260 AAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMIILSAAAVAGF 318

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEAT----WNDVQLEDSLGMEVGYRLIPMVDFQ 378
           +AW +   ++   A       A N     +     WN++    +LG+E+GY L+ +VD +
Sbjct: 319 VAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGLELGYGLVGLVDER 378

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
           +   L+ RI  IR++ ++EMGF+ P+V +RDN+ L P  YRI + GV +G  + +P + L
Sbjct: 379 KGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMGEDECFPEQLL 438

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           A++ G   G + G    DP+FGL A+WI    +  A + GYTVV+ +TVVATHLN +I+ 
Sbjct: 439 ALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVVATHLNQVIAA 498

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
            AA+LFG  EAQ+LLD + +  P+L   L P  ++L  +    + LL E VP++D R I 
Sbjct: 499 TAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEGVPLKDFRRIA 558

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           E + + A   +D   L   +R  +G  I Q   P K  + V+ LD  LE LL QA++   
Sbjct: 559 EAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLESLLAQAVRTSP 618

Query: 619 G----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
           G     EP LA+R++A   EA            ++ +   R  L+R L+  LP+  V+S 
Sbjct: 619 GASHPFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIARRALARLLKPHLPETPVMSF 678

Query: 675 LELSDNRHIRMTATIGG 691
           LE+ D + + + A +GG
Sbjct: 679 LEIPDGKAVEVAAVVGG 695


>UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria
           RepID=Q3SJM4_THIDA
          Length = 692

 Score =  713 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/667 (50%), Positives = 470/667 (70%), Gaps = 3/667 (0%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           +A P+L+LLIL+MMVLPLP F+LD+LFT NIAL+++VLLV++  +R L+F+ FPT+LL T
Sbjct: 16  VAVPLLVLLILAMMVLPLPTFMLDVLFTLNIALAMIVLLVSLNARRPLDFSVFPTVLLLT 75

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
           TLLRL+LNVASTRIILM+GHTG  AAGKV+E+FG+FLVGGN A+G VVF+ILVIINF+VI
Sbjct: 76  TLLRLSLNVASTRIILMQGHTGPDAAGKVIESFGNFLVGGNIAVGFVVFLILVIINFVVI 135

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKGAGRIAEV ARF LD MPGKQ+A+DADLNAG + E EA+ RR+E+ +EADFYG+MDGA
Sbjct: 136 TKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIGREADFYGAMDGA 195

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFVRGDAIAG++I+++N++GG+ VG+LQH + +G A   Y LLT+GDGLV QIPAL+IS
Sbjct: 196 SKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGDGLVTQIPALIIS 255

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
           TAAG++V+R S++QD+  +   Q+F  P  + ++AAVL  LG++PG P++ FL   A L 
Sbjct: 256 TAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTPHVAFLTIAAVLA 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNT-VVEATWNDVQLEDSLGMEVGYRLIPMVDFQQD 380
            LA W+    + A  +  P+   E     V+ TW+D+   D L +EVGYRLIP+VD  Q 
Sbjct: 316 ALALWLTRHRESAAFDSTPLPPIEEEALPVDVTWDDIPPVDVLALEVGYRLIPLVDRNQG 375

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
           G  L RI   R++FA +MG + P++ +RDN+DL+P  +RI +KGV++  G+   G+ LA+
Sbjct: 376 GAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGVDVAHGEMPTGQILAV 435

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
           + G   G + G   VDP   L  +WI++A  E+A+++G+ V+E + ++A  +  +  QHA
Sbjct: 436 DTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPAELIARQVEAVFRQHA 495

Query: 501 AELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILET 560
            EL GR E QQLLD +A+  P L ED+ P  + LTT+  +LQ L+ E VPIRD RT+ ET
Sbjct: 496 PELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLIAENVPIRDTRTLFET 555

Query: 561 LAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL--QGGG 618
           LA  AP   D  +L   VR ALGR+I  + F G D + VIGL    E  LL  +  +G  
Sbjct: 556 LAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPTTESRLLYEMGDEGEA 615

Query: 619 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
            L P   D L    ++A++  E  G PPVLL +  LR +LSR LRR+LP+L V++  E+ 
Sbjct: 616 LLAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLRAILSRLLRRTLPRLAVIAYAEVP 675

Query: 679 DNRHIRM 685
            ++ +++
Sbjct: 676 ADKTVQV 682


>UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales
           RepID=Q5HUS5_CAMJR
          Length = 724

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/723 (37%), Positives = 419/723 (57%), Gaps = 36/723 (4%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           + +L      P      + + L     ++ IL+++++PLP+ ILD     +IALS++++L
Sbjct: 6   IVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIIL 65

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           ++++  +  +   FPT++L  TL RL+LN+A+TR+IL EG  G  A  +++ AFG F+VG
Sbjct: 66  ISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMILSEGQNGPEAVSEIIAAFGEFVVG 125

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GN  IG++VF ILV+INFMV+TKG+ R++EV ARF LD MPGKQMAIDADLNAGLI E  
Sbjct: 126 GNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQT 185

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           A+ RR EV  EA+FYG+MDG+SKF++GDA+AGI+I +INI+GG L+G  QH M++  AA 
Sbjct: 186 ARARRQEVIAEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAAS 245

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +YT+LTIGDGLV+QIP L+ STA  +I+TR S  +++  E  + QL S    +L+   VL
Sbjct: 246 TYTILTIGDGLVSQIPGLITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVL 305

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE---------QKAPAEPKPVKMAENNTVV 350
            +  LVPG+P L         L L +  +  +         +K+         +      
Sbjct: 306 FIFALVPGLPTLSLGFMALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTT 365

Query: 351 EAT---------------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFA 395
            A                 ND+   + L +E+GY LI +     + EL  RIRS+R+  A
Sbjct: 366 AAPAKKSEEEILKEEEHKINDILKVEILELELGYGLIKLA----ENELTERIRSMRRSIA 421

Query: 396 QEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATV 455
           + +GFL P + IRDN+ L+P  Y   +KGV I S + YP ++LA++ G     + G AT 
Sbjct: 422 ESLGFLMPKIRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATK 481

Query: 456 DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDR 515
           +PAF  +A+WI++ LK++A + GY V++ ++V++TH++ LI  HA+EL  RQE Q LLD+
Sbjct: 482 EPAFNSDALWIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDK 541

Query: 516 VAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELT 575
           V  + P + E  + GV  ++ + K+L++LL   +PI+DM TILE++++ A +      + 
Sbjct: 542 VKNDYPIIVEGAL-GVAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMII 600

Query: 576 AVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLA 630
             VR +L R IT  +   K  + +  LD+    +L++ +Q   G     L       L+ 
Sbjct: 601 EHVRASLARMITNMYLDDKGNLDIFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVD 660

Query: 631 QTQEALSRQEMLGAPP-VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +  ++        P +L V   LR  ++         +VVLS  E+++N +      I
Sbjct: 661 TLRAEVAAVANGRIKPFILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720

Query: 690 GGK 692
             +
Sbjct: 721 RIE 723


>UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular
           organisms RepID=Q2SEX4_HAHCH
          Length = 697

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/676 (37%), Positives = 397/676 (58%), Gaps = 15/676 (2%)

Query: 19  WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78
              LA  + ++ IL ++  P+P+ +LD+L   N +  +++LL+  F  + L F+ FP++L
Sbjct: 14  RSELALVLGMVGILLVLFTPIPSQLLDVLLIINFSFGLLILLLTFFVDKPLGFSTFPSLL 73

Query: 79  LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138
           L  TL RL+LN+A+TR+IL +G      AG+V+ A G ++VGGN+ IG+VVF+IL+++ +
Sbjct: 74  LIATLFRLSLNIAATRLILSDG-----DAGEVINAIGTYVVGGNYVIGLVVFLILIVVQY 128

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           +V+T GA R+AEV ARF LD MPGKQM+IDAD+N GLI E EA++RR  + +EA FYG+M
Sbjct: 129 VVVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIEREASFYGAM 188

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGASKFV+GDAIAGILI++I+I+GGL VG+ Q G+S G A  SYTLLT+GDG+V QIPAL
Sbjct: 189 DGASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGDGIVTQIPAL 248

Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318
           VISTA G+I+TR +TD  +G+++  Q+   P  +++    L  L L+PG+P L   +  +
Sbjct: 249 VISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIPALPIFIVAS 308

Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378
            +  L  +   + +   AE       +     E    +    + L + +G  +   +   
Sbjct: 309 LMAALVVYAFKQNKYQEAEDNVEDQEDA----EKDIYEELKVEPLEISLGPSIAGYL-GA 363

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
            +G L+  I+ +RK+ A E+GF+ P V I          Y++ + G ++  G+ Y  R L
Sbjct: 364 SEGALMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGAQVAEGELYSDRIL 423

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
           AI+       LPG +  DP +GL A+WIE  LKE+A+    T+V+  TV+ TH+N  +  
Sbjct: 424 AISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPLTVMLTHVNETVRL 483

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
            A  L  R E ++L+ RV      L E+LVP  +TL+ + KVLQ LL EKV IR++  I 
Sbjct: 484 QAPALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLLQEKVSIRNIELIA 543

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618
           E L +   +  D  +L   VR  LG  I Q        +HV+ +D  +E+L+   ++   
Sbjct: 544 EALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPGIEQLMQSGIRVTE 603

Query: 619 G-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
                 ++P L +++L+     + +   +G  PVL+ +  +R  + +   R LP L VL+
Sbjct: 604 QGASLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVRRHIRKLSGRLLPHLTVLA 663

Query: 674 NLELSDNRHIRMTATI 689
             E+    +I+  + +
Sbjct: 664 LTEVPVGMNIKSFSIV 679


>UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium
           capsulatum ATCC 51196 RepID=C1F997_ACIC5
          Length = 700

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/682 (41%), Positives = 421/682 (61%), Gaps = 13/682 (1%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
           + LA P+  + ++ +M++P+PA +LDLL   ++A S++V L A+  ++ ++F+ FPT+LL
Sbjct: 22  KSLALPVGAISVIFVMLVPVPAVLLDLLLGLSMATSVVVFLAAVQVRKAVDFSVFPTLLL 81

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFM 139
             TL RL+LN+AS+R IL+ G TG AAAGKV+EAFG F+VGGN+ +G V+F+ L+ I F+
Sbjct: 82  LLTLFRLSLNIASSRRILLHGSTGTAAAGKVIEAFGQFVVGGNYVVGFVLFIALIAIQFL 141

Query: 140 VITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMD 199
           V++ GA R AEV ARF LD +PGKQMAIDAD+NAGLI E  A++RR  + QEA+FYG+MD
Sbjct: 142 VVSHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIAQEAEFYGAMD 201

Query: 200 GASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALV 259
           GA++F + D++A ILI  INIV GLL+G LQHG+++  A ++YT+LT+GDGLV  IP+L+
Sbjct: 202 GAARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGDGLVTMIPSLL 261

Query: 260 ISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAG 319
           +S A G+++TR S+   +  ++  QLF   + + +++ VLG L LVPG+P L FL+    
Sbjct: 262 VSVAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLPKLAFLVPAVI 321

Query: 320 LLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQ 379
           L G+   +   +    A  +  K A+ +       + V   D L +E+G++LIP+VD  Q
Sbjct: 322 LAGIGRTVTKEQPAEEAAEEAGKKADPSR--ADNLDSVLKVDDLSLEIGFQLIPLVDEAQ 379

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
            G +L R+R++R+  A E+GFL P VHI DN+ L+P  Y + ++G+EIG       + LA
Sbjct: 380 GGLMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGLEIGRWQTEANQLLA 439

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           ++       + G+   +PAFG NA WI   L+EQA   GY+VV+ +T ++THL  LI  H
Sbjct: 440 VSNEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPATAISTHLAELIRTH 499

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           A EL  R E ++LLD + +  PKL E+LVP V++L  + KVLQ LL E+V IRD+ TILE
Sbjct: 500 AHELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLLREQVSIRDLGTILE 559

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
           TL E A        +   VR ALGR +TQ+       + V+ L+  LE  L+ A Q    
Sbjct: 560 TLVEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPALEEALIAATQSEPP 619

Query: 620 LE-------PGLADRLLAQTQEALSRQEMLGAP---PVLLVNHALRPLLSRFLRRSLPQL 669
            +       P  A  L A+  E+L +          PVLL     R  L R+L    P++
Sbjct: 620 TDALLDRRTPASAQ-LFARISESLKKLSQNHPSSALPVLLCQSPARYYLRRWLEPVFPRI 678

Query: 670 VVLSNLELSDNRHIRMTATIGG 691
            VL+  E+     +     + G
Sbjct: 679 TVLAPPEIGPEIRVHSIGVLRG 700


>UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus
           caldus ATCC 51756 RepID=C6NYG1_9GAMM
          Length = 703

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/700 (42%), Positives = 454/700 (64%), Gaps = 17/700 (2%)

Query: 1   MSNLAAMLRLPANLKSTQWQIL---AGPILILLILSMMVLPLPAFILDLLFTFNIALSIM 57
           M +     +  A++  ++W  L    GPI++++IL+M+V+PLP  +LD+LFTFNI  S++
Sbjct: 1   MRDATVTTKTDASVVKSKWSNLQTLLGPIVLVMILTMIVVPLPPILLDVLFTFNITFSLL 60

Query: 58  VLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHF 117
           +L  A +T++ L+F+AFPT+LL  TLLRLALNVA+ R+IL++G+ G  AAG V+E+FG F
Sbjct: 61  ILFAAFYTKKPLDFSAFPTVLLIATLLRLALNVAAARVILLDGYRGDQAAGVVIESFGRF 120

Query: 118 LVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIG 177
           +VGG++ +GIVVF ILVIINF+VITKG+ RIAEV ARF LD MPGKQMAIDADLNAG+I 
Sbjct: 121 VVGGSYVVGIVVFAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMIN 180

Query: 178 EDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGH 237
           +++AKKRR  ++ EADFYGSMDGASKFVRGDAIA ILI++IN++GGL+VGV QHGMS+  
Sbjct: 181 QEQAKKRRELISAEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSS 240

Query: 238 AAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLF-SNPSVMLLSA 296
           AA +YTLL+IGDGLVAQIP+LVIS AAG++V+R S D ++G  +  QLF  N   +L++A
Sbjct: 241 AAHTYTLLSIGDGLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTA 300

Query: 297 AVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWN- 355
            +LG+ G++PGMP+  FLL+      + + ++  + +   +      AE   VVE   + 
Sbjct: 301 IILGITGIIPGMPHWAFLLYALLTGSIWYVLQRSKVREAEQVSATTAAEAPAVVEEPIDA 360

Query: 356 -DVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414
             ++  + +G+ +GY+LIP++  Q+DGEL  R+  +R++ ++  GF+ P +H+ D++ L+
Sbjct: 361 RVLKRVEPIGLAIGYQLIPLM--QKDGELQKRLNLLRRRISESAGFVLPAIHVTDDLTLR 418

Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474
           P  YRI + G+    G+ +  + LAI  G+    + G  T DP +G  A WI     + A
Sbjct: 419 PGGYRIEIHGIGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDA 478

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
           ++ GYTV++A+TVV THL+ ++ +H A++FG ++ Q+LLD VA+   KL + ++P +VT 
Sbjct: 479 ELLGYTVLDAATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTA 538

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF--- 591
             L KVL++L+ E+V +RD+  ILE+LAE         +L  ++R  LGR I        
Sbjct: 539 PKLTKVLRDLVREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGR 598

Query: 592 PGKDEVHVIGLDTPLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAP 645
                +    +   ++ +L        A      LEP +   L    ++A+++ E     
Sbjct: 599 DRGAPLQAAVMSPEMDSVLQTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMR 658

Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685
           PV+LV  A+R  LS +LR +   + VL   E+     ++ 
Sbjct: 659 PVILVRDAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698


>UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter
           RepID=B4UG32_ANASK
          Length = 692

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/682 (43%), Positives = 436/682 (63%), Gaps = 10/682 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
           +     LA  I +L IL+++++PLP   LD+    +I LS+++LLVA+   R +EF+ FP
Sbjct: 11  AGGRAELAVAIGVLGILAILIVPLPPAALDVFLALSIGLSVLMLLVALGLTRAVEFSVFP 70

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           ++LL  TL RLALNVA+TR+IL +G  GA AAG ++E FG F VGG+  +G+VVF+IL+I
Sbjct: 71  SLLLLVTLFRLALNVATTRLILTDGGKGAGAAGHLIETFGRFAVGGSLVVGLVVFLILLI 130

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           +NF VITKG+ R++EV ARF LD +PGKQMAIDADL AGL+ + EA+ RR  + +E +F+
Sbjct: 131 VNFTVITKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALERETEFF 190

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFVRGDA+AG+ I  +NIVGGLL G+L+  +S+  AAE+YTLLT+GDGLV+Q+
Sbjct: 191 GAMDGASKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGDGLVSQM 250

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           PAL++STAAG++VTR +   D+G Q+ +Q+   P V+  +A VL  LGL+PGMP + F  
Sbjct: 251 PALLVSTAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMPLVAFGG 309

Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV 375
               LL  A    GR++ A   P+P    +    ++       LE    + VGY L+P++
Sbjct: 310 VAGALLLAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALE----LGVGYGLVPLI 365

Query: 376 DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPG 435
           D  + GEL GR+ ++R++ A ++G + P VH+RD++ L P +YR+L++GVE+G G A+P 
Sbjct: 366 DLDKGGELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGVELGRGLAHPE 425

Query: 436 RWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
           R +A++P      + G   VDPAFGL A+WI  A + +A+  G T+V+A++V+ THL+ L
Sbjct: 426 RLMALDPNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAASVITTHLSEL 485

Query: 496 ISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMR 555
           + ++A E+ GRQE Q+LL  + ++ PKL ED+VPG ++L  L +V++ LL E V +RD+R
Sbjct: 486 LRRNAHEIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLLREGVSVRDLR 545

Query: 556 TILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQ 615
           T+LE +A+ AP   +P  L    R  L R +T +       V  + LD   E  L   L 
Sbjct: 546 TVLEAVADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRSTEETLRATLG 605

Query: 616 GGGG---LEPGL--ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLV 670
              G   L P +  A RL+A  +   +R    G P VLL    LR  L  F  R +P + 
Sbjct: 606 ASDGEAALAPDVETARRLVASLESGATRLTGAGQPVVLLAPPDLRRPLFDFASRFVPDVQ 665

Query: 671 VLSNLELSDNRHIRMTATIGGK 692
           VL+  EL+    +    T+  +
Sbjct: 666 VLAARELAPGTTVEPAGTVQAQ 687


>UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter
           RepID=C5EZ65_9HELI
          Length = 754

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/737 (38%), Positives = 422/737 (57%), Gaps = 60/737 (8%)

Query: 11  PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70
           P   + T  + L     I+ IL+++++PLP+ +LD     +IALS +++L+A++ ++  +
Sbjct: 16  PFLSQLTGSKDLTVVFFIIAILAIIIVPLPSALLDFFLAISIALSALIILIALYVKKPTD 75

Query: 71  FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130
           F+AFPT+LL  TL RL+LN+A+TR+IL  GH G  A   ++ AFG F+VGGN+ IGI++F
Sbjct: 76  FSAFPTLLLIVTLFRLSLNIATTRMILSNGHLGPEAVSDIITAFGQFVVGGNYVIGIILF 135

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           +ILVIINFMV+T G+ R++EV ARF LD MPGKQMAIDADLN GLIG++EAK RR E+  
Sbjct: 136 IILVIINFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAA 195

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           EADFYGSMDGA+KFV+GDAIAGI+I +INI+GG L+GV Q  MS+  AA ++T+LTIGDG
Sbjct: 196 EADFYGSMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDG 255

Query: 251 LVAQIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           LV+Q+PAL++STA G+IVTR S + ++    +V+QL +    +++   +L L  LVPG+P
Sbjct: 256 LVSQLPALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLP 315

Query: 310 NLVFLLFTAGLLG-------------------LAWWIRGREQKAPAEPKPVKMAENNTVV 350
            +         L                    L   +R  + +    P P +  +  +  
Sbjct: 316 TISLGFVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGG 375

Query: 351 EAT--------------------------WNDVQLEDSLGMEVGYRLIPMVDFQQDGELL 384
           +                             +       L + +GY+LI   D  Q GEL+
Sbjct: 376 QTPQNAQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELV 435

Query: 385 GRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGT 444
            +IR+IRK  A E G L P+VH+RD+++L P  Y+IL+K +EIG G     ++LAI    
Sbjct: 436 NKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSG 495

Query: 445 AAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
             G LP G  T +P FGL+A WI+   KE A I+GYT+++ +TV++TH+  LI Q+A EL
Sbjct: 496 FVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEEL 555

Query: 504 FGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAE 563
             RQE   L+ ++ Q+ P L E++    V + T+  +L+ LL E++PI+DM +I E +A+
Sbjct: 556 LTRQEVANLVAKLGQDYPILAEEI--KGVGIGTIQHILKELLHEQIPIKDMLSIAEAIAD 613

Query: 564 HAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL------QALQG 616
             P    D   L+  VR  L R IT  +      +    L   LE+ LL      Q +  
Sbjct: 614 GYPAYKADLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ 673

Query: 617 GGGLEPGLADRLLAQTQEALSRQEMLGAPPVLL--VNHALRPLLSRFLRRSLP--QLVVL 672
              L P  +  LL     A  +   +GA P ++  V   LR  L+ FL +      +VVL
Sbjct: 674 RLRLSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVL 733

Query: 673 SNLELSDNRHIRMTATI 689
           S  E+       +  +I
Sbjct: 734 STAEIDYQSKFEILGSI 750


>UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria
           RepID=Q254G8_CHLFF
          Length = 709

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/693 (32%), Positives = 378/693 (54%), Gaps = 26/693 (3%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             +   L   + ++ ++ M++LPLP  I+DL+ T N+A+S+ +L+VA++    L+ + FP
Sbjct: 21  INKSSDLILALWMIGVVLMIILPLPPTIVDLMITINLAVSVFLLMVALYIPSALQLSVFP 80

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           ++LL TT+ RL +N++S+R IL++ +     AG V++AFG F+VGGN+ +G ++F+I+ I
Sbjct: 81  SLLLITTMFRLGINISSSRQILLKAY-----AGHVIQAFGDFVVGGNYVVGFIIFLIITI 135

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           I F+V+TKGA R+AEV ARF LD MPGKQMAIDADL AG+I   +A+ +R  + +E++ Y
Sbjct: 136 IQFIVVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELY 195

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGA KF++GD IAGI+I +INIVGGL +GV  HGM +  AA  YTLL+IGDGLV+QI
Sbjct: 196 GAMDGAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQI 255

Query: 256 PALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           P+L+IS  AG++ TRVS+D   ++G+++ +QL   P  +LL++A    +G   G P   F
Sbjct: 256 PSLLISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSF 315

Query: 314 LLFTAGLLGLAWWI------RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367
            + +     L   +        ++  + A       A+         +D  L   + +E+
Sbjct: 316 SILSFIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILEL 375

Query: 368 GYRLIPMVDF---QQDGELLGRIRSIRKKFAQEMGFLPPVVHIR-DNMDLQPARYRILMK 423
           G  L  ++          +   I  +R+   Q++G   P +H+R D+  L+   Y IL+ 
Sbjct: 376 GKDLSALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLN 435

Query: 424 GVEIGSGDAYPGRWLA--INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
            V    G   P   L   +        LP   T   A GL + W+    K   +      
Sbjct: 436 EVPYVRGKIPPHHVLTNEVEENLKRYNLPFI-TYKNAAGLPSAWVSEDAKTILEKAAIKY 494

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
                V+  HL++   + + E  G QE + +++ + +  P L +++   ++ L  L ++ 
Sbjct: 495 WTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVT-RLIPLQKLTEIF 553

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           + L+ E++ I+D+RTILE+L+E A  + D   LT  VR +L   I+ ++  G+  + V  
Sbjct: 554 KRLVQEQISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYL 613

Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           LD  +E ++  A++         L+P   + +L   +  ++     G PPVLL    +R 
Sbjct: 614 LDPEIEEMIRGAIKQTSAGSYLALDPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRR 673

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            + + +    P + V+S  E+     I+    I
Sbjct: 674 YVRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706


>UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria
           RepID=A9L223_SHEB9
          Length = 685

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/682 (32%), Positives = 390/682 (57%), Gaps = 26/682 (3%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           K+     +    ++++ + MM+LPLP  ++D+L   N+ LSI++L++A++ +  LEF+ F
Sbjct: 10  KAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLEFSVF 69

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RLAL ++++R+IL++       AG +V  FG+F+VGGN A+GI++F I+ 
Sbjct: 70  PSLLLITTLYRLALTISTSRLILLQ-----HDAGDIVYTFGNFVVGGNLAVGIIIFAIIT 124

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ F+VITKG+ R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK++R++V +E+  
Sbjct: 125 IVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQL 184

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV+GDAIA I++++ NI+GG+ VGV+QH MS   A  +Y +L++GDGL+AQ
Sbjct: 185 YGAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQ 244

Query: 255 IPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           IP+L+IS  AG+IVTRV  +  Q++  ++V Q+   P+ + ++  V+ +  L+PG P LV
Sbjct: 245 IPSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILV 304

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
           F    + +LG + W++ ++++A A+       E +   +A  +D    D++       ++
Sbjct: 305 FGTLGSVVLGASLWLKRQQKRASAQ------GEESHFTDAGKSDTANVDNMAPGAVPLIL 358

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
            +        +   ++ +R ++ +++G   P + ++           +L+    +     
Sbjct: 359 YLGADVPIHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQLQL 418

Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
            P   L I+      T+P      P       WI+    EQA+ QG  V     + A  +
Sbjct: 419 VPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVM 475

Query: 493 NHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             +I ++A E  G QE + L+D +     +L ++L   ++++  + ++LQ L++E + +R
Sbjct: 476 GKVIDRYAGEFIGVQETRYLMDAMEARYGELVKEL-QRLLSVGKVAEILQRLVEEGISVR 534

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ 612
           D+RTI ETL E  P + D   LT  VR+AL R I +++   +  + V+ +   +E ++ +
Sbjct: 535 DLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRE 594

Query: 613 ALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLP 667
           +++         L+     ++L   QE L  +       VLL +  +R  L + + R L 
Sbjct: 595 SIRQSTAGSYSALDMAQTQQILTCIQEQLPPE----QTCVLLTSLDVRRYLRKIVERELF 650

Query: 668 QLVVLSNLELSDNRHIRMTATI 689
              VLS  EL D+  I++   +
Sbjct: 651 STPVLSFQELGDDAEIKVIGQV 672


>UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia
           RepID=FLHA_BORBU
          Length = 697

 Score =  684 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/689 (35%), Positives = 409/689 (59%), Gaps = 15/689 (2%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           L       L   + ++ +++  +LPLPA ILD+L T N+ +S++++L+ ++++R+L+F+ 
Sbjct: 13  LGLNNKSDLIISVGLIFVVAGFILPLPAVILDVLITVNLVISLLIILIVLYSKRSLDFSV 72

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FPT+LL  T+  L LN++STR+IL +G       G+++  FG F+VG +   G+V+  I+
Sbjct: 73  FPTLLLVMTIFGLVLNISSTRLILTKG---INFDGQMIRTFGTFVVGSSGIQGLVIGFII 129

Query: 134 VIINFMVI----TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
            II   V     TKGA R+AEV ARF LD +PGKQMAID+  ++G + E+EA ++++++ 
Sbjct: 130 FIIIIAVQFIVITKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQ 189

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            E +FYG+MDGASKFV G+   G LI +INI+GGLLVG+   G++   A  +Y  LT+GD
Sbjct: 190 SEVNFYGAMDGASKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGD 249

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           GLV+Q+P+L+IST+ G+IVTR  +    G ++ +Q  ++  +  + +  L  L  +PG P
Sbjct: 250 GLVSQLPSLLISTSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFP 309

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTV-VEATWNDVQLEDSLGMEVG 368
            L+ +  +  +  LA+ + G  QK   + K     E  ++  +   + V   D L +E+G
Sbjct: 310 TLILMFLSLSIAFLAYSLSGIRQKEEIDKKMKLEEEQASIYSDKDVSPVVPLDPLALEIG 369

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y L+P+VD  +  ELL RI  IR++ A E G + P + I DNM L+P  Y   ++GVE+G
Sbjct: 370 YNLVPIVDDTKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVG 429

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
            G+   G++L IN G  +G + G+   DP+FGL ++W+    +E A+  GYTVV+  +++
Sbjct: 430 RGEIKLGKFLVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSII 488

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATH+  LI +H+ E+  RQ+ Q  LD   ++   + E+++    ++  + +VLQ LL E+
Sbjct: 489 ATHMTELIKRHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKN-FSVGEIQRVLQGLLKEQ 547

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           V IR++ TI ET+A+   I  D   L    R ++GR IT  +     E++VI L+   E+
Sbjct: 548 VSIRNLVTIFETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQ 607

Query: 609 LLLQALQGG-----GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
           +++ +           ++P L  + + +  + ++  +  G  PV+L + + RP++     
Sbjct: 608 MIIDSRVESNHDLISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITS 667

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIGGK 692
           R +P LVV+S LE+  N  + +  T+  +
Sbjct: 668 REIPDLVVMSVLEVPQNIKVNVLKTVEVE 696


>UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P6J9_9SPHN
          Length = 700

 Score =  684 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/685 (40%), Positives = 421/685 (61%), Gaps = 10/685 (1%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N++      LA P  IL I+ +MV+P+PA +LD+    NIALS+ VL+ AM  Q+ L+F+
Sbjct: 2   NVRHFLNPGLALPFGILTIILLMVMPIPAILLDVFLVMNIALSVSVLMAAMNAQKPLDFS 61

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FP++LLF TLLRLALNVASTRI+L+ GH G A+AGKV+EAFG FL+GGNFA+GI VF+I
Sbjct: 62  SFPSVLLFATLLRLALNVASTRIVLLNGHEGGASAGKVIEAFGAFLIGGNFAVGIFVFLI 121

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L+IIN MV+TKGAGR++EV ARF LD +PGKQMAIDADL AGL+  DEAK RR E+  EA
Sbjct: 122 LMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIATEA 181

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           DFYGSMDGASKFV+GDA+A +LI++IN++ GL++G+  HG++ G AAE+Y  L +GD LV
Sbjct: 182 DFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGDALV 241

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           A +PAL++S AA VIVTRVS  +D+  Q+  QL ++P + L  A +L ++G +P MP  +
Sbjct: 242 ASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMPQSI 300

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
            L  ++G   L + +R   +     P+P    + + +      +V  +  + +++GY LI
Sbjct: 301 ILPLSSGTFYLWFRLRKNHEARKEMPEPEAKPDPSHIT---IEEVTDQTLVTVQLGYGLI 357

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
            + D ++   L+ R+  +RK+  Q  GF+ P   I D+ +L P  YRI + G  +G G  
Sbjct: 358 SLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGATLGGGKI 417

Query: 433 YPGRWLAINPGTAAGT--LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
            PG  LAI+ G   G+  +PG  TVDP+FG  A+WIE   ++ A  +GY  V+  +V+AT
Sbjct: 418 NPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVDPESVIAT 477

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
            ++ L+   A +L G  + + L++ +     +L + + P  ++L  L ++L++LL + + 
Sbjct: 478 QVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRSLLADGIS 537

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610
           +R    +  +++  A   ++   L  +VR  LG  I  +  P   ++ VI L   LE ++
Sbjct: 538 LRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLAARLEEMV 597

Query: 611 LQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSL 666
              LQ        +EP LA  +  +    + +++     P L+V    R  LS  LR   
Sbjct: 598 TGGLQDPSSGEIIIEPDLARSIGERIAAIIGQRDPAATRPALIVQPRARRALSALLRLRA 657

Query: 667 PQLVVLSNLELSDNRHIRMTATIGG 691
           PQ +VLS  EL   + I + A +G 
Sbjct: 658 PQCLVLSINELPVAQPIEVIAVVGD 682


>UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX
          Length = 675

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 214/692 (30%), Positives = 367/692 (53%), Gaps = 34/692 (4%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           L    K+  +  L   +   + + MM++PLP  ++D++   NI+ ++++L+++++ +  L
Sbjct: 5   LNIFKKAESYHDLILALFFFMAVMMMIIPLPTVVVDIIIAINISTALLLLMLSIYIKNPL 64

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           E  +FPTILL TTL+RL+L+V++TR+IL+        AG ++ +FG+F+VGGN  +G+V+
Sbjct: 65  ELTSFPTILLITTLMRLSLSVSTTRLILLH-----HDAGDIIYSFGNFVVGGNIVVGLVI 119

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F I+ I+ FMVITKGA R+AEV ARF LDGMPGKQM+ID D+ AG+I   EAK  RS V 
Sbjct: 120 FTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQ 179

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +E+ FYGSMDGA KFV+GDAIAGI+I+++N+ GG+L+G+ Q  M    A   +++L++GD
Sbjct: 180 KESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGD 239

Query: 250 GLVAQIPALVISTAAGVIVTRVST----DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLV 305
            LVAQIPAL+IS  AGV+VTRV      ++++   +V Q+  N    L+SAA++ ++ ++
Sbjct: 240 ALVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAII 299

Query: 306 PGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365
           PG P LVFL     LLG+AW ++ +                    +A   D+    ++  
Sbjct: 300 PGFPALVFLFLAVCLLGIAWKLQKKR-----------TFGTGNNKDAMGADLSNSQNISP 348

Query: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGV 425
                ++ +       ++  +I  +R  F +E G   P + +    +   A    L+   
Sbjct: 349 GAEPLILNLSSNIYSSDITQQIEVMRWNFFEESGIPLPKIIVNPVKNNDSA-IEFLLYQE 407

Query: 426 EIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAS 485
            I          +    G A  +         +            ++ A + G  V   +
Sbjct: 408 SIYKDTLI-DDTVYFEAGHAEISFEFVQEK-LSTNSIVYKTNKTNQQLAHLTGMDVYATT 465

Query: 486 TVVATH-LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
               T  L  L+  +A E  G QE + L+D + ++  +L ++L    + L+ +  +LQ L
Sbjct: 466 NDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKEL-QRQLGLSKIVDILQRL 524

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           ++E V IRD+RTI ETL   +  + D   L   VR+AL R I  ++      ++V  + +
Sbjct: 525 VEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLIGS 584

Query: 605 PLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
            +E  L ++++         + P   ++++   +  ++         V+L    +R  + 
Sbjct: 585 DIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNG----VILTALDIRRYVK 640

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           + +  S P + VLS  E+ +N  +++  T+  
Sbjct: 641 KMIEGSFPSVPVLSFQEVGNNIELKVLGTVND 672


>UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria
           RepID=HRPI_ERWAM
          Length = 715

 Score =  679 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/712 (33%), Positives = 386/712 (54%), Gaps = 34/712 (4%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           MS+L   L   A + + Q   + G  +++ I+ MM++PLP  ++D+L   NI +S ++++
Sbjct: 1   MSSLFVWLNRLA-ISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIV 59

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           +AM+  + L F+ FP++LL TT+ RLAL++++TR IL++       AG +VEAFG+F+VG
Sbjct: 60  LAMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQ-----QDAGHIVEAFGNFVVG 114

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GN A+G+V+F+IL ++NF+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI   +
Sbjct: 115 GNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQ 174

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           A++RR  + +E+  +G+MDGA KFV+GDAIAG++I+ IN++GG  +GVLQ+GM  G A  
Sbjct: 175 ARQRRENLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMH 234

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-----DVGEQMVNQLFSNPSVMLLS 295
            Y++LTIGDGL+AQIPAL+IS  AG+I+TRVS D      ++G ++  QL S P   ++S
Sbjct: 235 IYSVLTIGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMS 294

Query: 296 AAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT-W 354
           AA +    L+PGMP  VF++ +A  LG   +   R ++  ++ +  ++       E   +
Sbjct: 295 AAGMLGFALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGY 354

Query: 355 NDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414
            D++  +     +       ++ +    L+  IR +R +     GF  P   I  +  L 
Sbjct: 355 QDLRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALA 414

Query: 415 PARYRILMKGVEIGSGDAYPGRW--------LAINPGTAAGTL-PGEATVDPAFGLNAIW 465
              +R  +  + + +      +         + +  G + G + PG+A  D     +  W
Sbjct: 415 ADEFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEH---HWCW 471

Query: 466 IESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTE 525
           +        Q +      A  ++   +   I Q  A+  G QE++ +L+ +  E P+L +
Sbjct: 472 LPPQH-PLLQQEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQ 530

Query: 526 DLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRA 585
           +L   ++ L+    VLQ L  E++P+R +RTI ETL EH   + D   LT  VR+AL   
Sbjct: 531 EL-QRIMPLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEH 589

Query: 586 ITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE 640
           I  Q+      ++V  L    E LL  +L+         L       LL Q + A     
Sbjct: 590 ICHQYQQPNG-LNVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPY- 647

Query: 641 MLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
                 ++LV   LR  L   L+     + VLS  EL+ N  I +   +  +
Sbjct: 648 -DNHHALILVAQDLRSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQ 698


>UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria
           RepID=A3PKA8_RHOS1
          Length = 704

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/686 (44%), Positives = 430/686 (62%), Gaps = 12/686 (1%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             +   +  P+ IL +++MMVLPLP  +LDL F  NI LS+++L+VA+ T R L+F++FP
Sbjct: 11  GARLGGMTLPLGILAVVAMMVLPLPVALLDLFFVGNILLSLVILMVALHTFRPLDFSSFP 70

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           +ILL  T+LRLALNVASTRI+L  GHTG  AAGKV+EAFG F++GGNF +G  VF ILVI
Sbjct: 71  SILLVATVLRLALNVASTRIVLSNGHTGHDAAGKVIEAFGSFVIGGNFVVGAFVFAILVI 130

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           IN +VITKGAGR++EV ARF LD MPGKQMAIDADLNAGL+  DEA++RR++V  EADFY
Sbjct: 131 INLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEADFY 190

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFV+GDA+AGILI++INIVGG+++G LQHG+ +  AAE+Y LL+IGDGLVAQI
Sbjct: 191 GAMDGASKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLVAQI 250

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           P+L++S A  +IVTRVS+  D+   +  Q+       +  AAV+ +LGL PGMPNL+FLL
Sbjct: 251 PSLLLSIATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMPNLLFLL 309

Query: 316 FTAGLLGLAWWIRGRE-------QKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
                  +AW    RE         A      V+          T  DV     + +++G
Sbjct: 310 GGVAAAAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAPISLQIG 369

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           Y LIP+      G L+ RI +IR+  ++ +GF+ P V IRD++ L P +YRI +    + 
Sbjct: 370 YGLIPLA-GDNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQAILA 428

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
               YP R LA+  G +   L G A  DP+FGL A WI      +A+   + VVE  +V+
Sbjct: 429 EDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEPESVI 488

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
           ATHL+ ++ +HAA+L G+ + Q L+D + +  P L + +VP +V L  L  VL+ LL ++
Sbjct: 489 ATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKALLADR 548

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           +P+ DMR ILE L++ A     P E+   +R AL   + QQ  P    + +I L+  LE+
Sbjct: 549 IPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITLEPDLEQ 608

Query: 609 LLLQALQGGGGL---EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665
           LLL++ + G  +   + GLA  LL    E L      G    ++V   LR   + F+R  
Sbjct: 609 LLLRSRRQGDEMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQPLRRAFAAFVRPH 668

Query: 666 LPQLVVLSNLELSDNRHIRMTATIGG 691
           LP  VV+   EL + R + +  T+GG
Sbjct: 669 LPDAVVIGMGELPEARRVEVLGTVGG 694


>UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM
           2246 RepID=UPI00016C3B57
          Length = 720

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/692 (41%), Positives = 425/692 (61%), Gaps = 14/692 (2%)

Query: 9   RLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRT 68
             PA+        L   + +L +L + ++PLP  +LD+L  FNI+ ++++LLV +  ++ 
Sbjct: 17  TTPASGSPLLRSELLLSVALLGLLVIFLVPLPTIVLDMLLAFNISATLLLLLVTLTVKQP 76

Query: 69  LEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIV 128
           LEF+ FP++LL  TL RLALNVA+TR++L+ G      AG +VEAFG F+VGG+  +G+V
Sbjct: 77  LEFSTFPSLLLLLTLFRLALNVATTRLVLLNG-----DAGTIVEAFGKFVVGGSLIVGLV 131

Query: 129 VFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEV 188
           +F+IL++I F+VITKGAGR++EV ARF LD +PGKQMAIDA++NAG+I E EAK+RR+ +
Sbjct: 132 IFLILIVIQFVVITKGAGRVSEVAARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSL 191

Query: 189 TQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIG 248
            +E++FYG+MDGAS+FVRGDA+A I+I  IN+ GG ++G L  GM +  A   Y++LTIG
Sbjct: 192 MRESEFYGTMDGASRFVRGDAVAAIIITAINLFGGFIIG-LTKGMPLAEAVRRYSILTIG 250

Query: 249 DGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           DGLV QIPAL+ +TA+ ++VT+ ++   +GE++  Q  +      L+A +L  L LVPGM
Sbjct: 251 DGLVTQIPALITATASAMLVTKATSGTSLGEELGGQFSAASGPFRLAAFILIALALVPGM 310

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAP------AEPKPVKMAENNTVVEATWNDVQLEDS 362
           P L FL     LL L+  +    +  P      A       A + + VE   +D    D 
Sbjct: 311 PMLPFLALGVALLLLSRRMSRVPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDR 370

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
           + +E+G  LIPMV  ++   L+ RI  +R+  A++ G   P V +RDN+ L P  YRIL+
Sbjct: 371 VSLEIGAALIPMVSARRGPGLIDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILL 430

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAG-TLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
            G E+  GD  P  WLAI+PG AA   L GE   +PAFGL A WI  A + +A+  G+TV
Sbjct: 431 GGREVARGDVRPDLWLAIDPGGAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTV 490

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           V++  V+ THL  ++ +HA EL GR + + ++DRV +  P + +DL+P VV++  LH+VL
Sbjct: 491 VDSPNVIITHLGEVVRRHAGELLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVL 550

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
             LLDE+VPI ++  ILE+LA HAP   DP EL   VRV LGRA+  ++      +  I 
Sbjct: 551 TQLLDERVPISNLPRILESLAAHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIV 610

Query: 602 LDTPLERLLLQALQGGG-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
           LD  LE  L +A+Q     ++P   ++L  +    L +    G    LL +  LR  L  
Sbjct: 611 LDPRLELDLKRAVQNNQLIIDPSRLEQLTMRVAAELRKAGARGYEAALLCDAGLRRALRH 670

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            L R+L  L V+S  E+  +  +   A I  +
Sbjct: 671 SLARALHDLSVVSYQEIPTDLLMEPVAVIRPE 702


>UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri
           RM4018 RepID=A8EW37_ARCB4
          Length = 703

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/705 (37%), Positives = 416/705 (59%), Gaps = 29/705 (4%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           +  + K    + L    L L +L+++++PL    LD   + ++A+S ++LL++++ Q+  
Sbjct: 1   MNFDFKKIFTRDLIAVALFLSMLAIIIVPLNQEALDFFISVSLAISFLILLISLYIQKPA 60

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           +   FPT++L   + RLAL++A+TR IL EGH G  A   ++ AFG F+VGGN  IGI++
Sbjct: 61  DLTTFPTLILILVVFRLALSIATTRSILGEGHNGPDAVSSIITAFGQFVVGGNMVIGIII 120

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F+ILV+INFMV+TKGA R+AEV ARF LD MPGKQMAIDADLNAG I + +A+ RR  + 
Sbjct: 121 FIILVLINFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALI 180

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            EA+FYG+MDG+SKFV+GDAIA I+I ++N+VGG+LVG+ QH +S+  A E+YT+LTIGD
Sbjct: 181 SEANFYGAMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGD 240

Query: 250 GLVAQIPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           GLV+QIPAL++STA  +I+TR +  D+    Q VNQL  +   ++L    L L  LVPG 
Sbjct: 241 GLVSQIPALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGF 300

Query: 309 PNLVFLLFTAGLLGLAWWI------------------RGREQKAPAEPKPVKMAENNTVV 350
           P  + +     + GL + I                    ++   P + K  +   +    
Sbjct: 301 PTFILMTMGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADE 360

Query: 351 EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDN 410
             T   +   + L +++G RL+ +V  Q + ELL +I++IRK  A E+GF+ P + I D+
Sbjct: 361 TQTIETIMKLEVLELKLGIRLLQLV--QGNSELLDKIKAIRKTIASELGFVIPQIRISDD 418

Query: 411 MDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESAL 470
             L P  Y++ +K + +  G     ++LA+  GT    L G    +P F L+A WI   L
Sbjct: 419 SYLSPNEYQLYLKRIPLVKGRIEVDKFLAM-GGTGNEKLQGIHVKEPVFNLDATWITGDL 477

Query: 471 KEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPG 530
           +E+A ++G+TVV+A T+++TH++ +I +HA ++  RQ+   +++R+ ++ P + E+ +  
Sbjct: 478 REEALMKGFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAM-K 536

Query: 531 VVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQW 590
           V +   L KV ++LL EK+PI DM TI+E +A+ A     P  L   VR  L R ITQ++
Sbjct: 537 VTSYGALLKVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKF 596

Query: 591 FPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAP 645
                 +H+I +   +E+  +  LQ   G     L     + L+ +T++ L   EM G  
Sbjct: 597 KDTDGILHIITIKPDVEQQFIGKLQEHHGISQLMLSIAEINNLVTKTKQLLDDVEMKGFS 656

Query: 646 PV-LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            V ++V+  LR  +S    +   Q+ VLS+ EL    +  +  T+
Sbjct: 657 KVCMVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701


>UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira
           RepID=C0QXX5_BRAHW
          Length = 703

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/704 (34%), Positives = 396/704 (56%), Gaps = 22/704 (3%)

Query: 2   SNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLV 61
            ++   ++LPANL  ++   +   I  ++++ M+++PLP+ ILD L   NI +S+++LL+
Sbjct: 5   KSILDNIKLPANL--SRHSDIMFAIGAVMVIMMLIIPLPSLILDFLLIINIIVSLLILLM 62

Query: 62  AMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGG 121
            +  +   +F+ FP++LL  T  RLALNV++TR IL EG   A   GKV+ +F  F+VGG
Sbjct: 63  VLSIRSANDFSVFPSVLLVMTAFRLALNVSTTRAILTEG---ANFGGKVITSFADFVVGG 119

Query: 122 NFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEA 181
           N  +G+V+F+IL+I+ F+VITKGA R++EV ARF LD MP K MA++++L AG I + EA
Sbjct: 120 NIVVGVVIFIILIIVQFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEA 179

Query: 182 KKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAES 241
           +++R ++  E+DFYG+MDGASKFV+GD IAGI+I VINIVGGL++G+   G     A  +
Sbjct: 180 EEKRKKIRGESDFYGTMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNA 239

Query: 242 YTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301
           YT  T+GDGLV+QIP+  +S A G++VTR S++ ++  Q+  Q+F+ P  + + A     
Sbjct: 240 YTRFTVGDGLVSQIPSFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFF 299

Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND--VQL 359
           L L+PG P +   +    L    + ++  +Q+        K      V +   +      
Sbjct: 300 LMLLPGFPKIALFIIALALFLAGYALKKEQQELGLNEDGTKTDAGEQVHQGPLDVTPFLK 359

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
            + + + VG  LIP+    + G+L+ RI  IR++ A E+G + P V I DN  ++P  Y 
Sbjct: 360 VEKIELSVGASLIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYT 419

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLP-GEATVDPAFGLNAIWIESALKEQAQIQG 478
           + + G E+  G   P   LA+N  +  G  P  E   +PAFGL A WI+   K+ A+ +G
Sbjct: 420 VSINGTEMAKGFVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKG 479

Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVP----GVVTL 534
           + + + ++V+ATH +  I ++A  L GR+E Q +LD +  +   L  +++         L
Sbjct: 480 FMLFQPTSVIATHFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPL 539

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594
             + KVLQNLL E+VPIR+   ILE +A+   I     + T +VR  L   I+Q      
Sbjct: 540 GYIQKVLQNLLQEEVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQD 598

Query: 595 DEVHVIGLDTPLERLLLQALQGGG--------GLEPGLADRLLAQTQEALSRQEMLGA-P 645
             + VI L   L+  + Q L   G         +       L+   ++A+      G   
Sbjct: 599 RNIRVITLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDD 658

Query: 646 PVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            V L +  +R  L +F+ +++ +  V++  E++   +++  A+I
Sbjct: 659 IVFLTSPIIRRPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702


>UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus
           RepID=B4EYD9_PROMH
          Length = 699

 Score =  670 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/703 (31%), Positives = 374/703 (53%), Gaps = 37/703 (5%)

Query: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73
           L       L    +++L++ M+++PLP +++D L   NI ++I++ + + + +R L F  
Sbjct: 7   LAIKNKPELIVLSVMILVIMMLIIPLPTYLVDFLIGLNITIAILIFMSSFYIKRILNFMT 66

Query: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133
           FP +LL TTL RLAL+++++R+IL++     A AG+++ +FG F++G N  +G VVF I+
Sbjct: 67  FPALLLITTLFRLALSISTSRLILLD-----ADAGEIITSFGEFVIGENLVVGFVVFSIV 121

Query: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193
            I+ F+VITKG+ R+AEV ARF LDGMPGKQM+IDADL +G+I  +E + RR E+ QE+ 
Sbjct: 122 TIVQFLVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQ 181

Query: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253
            YGS DGA KF++GDAIAGI+I+ +N++GG+ VG+ Q G+S+  A  +YTLLTIGDGLVA
Sbjct: 182 LYGSFDGAMKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVA 241

Query: 254 QIPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           QIPAL+IS +AG IVTRV  +  ++G  ++N+L +    +L++A +   +G +PG P  V
Sbjct: 242 QIPALLISISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPV 301

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG----MEVG 368
           FL+ +  L    ++ + + + +  E K     +N+    A      + +        EV 
Sbjct: 302 FLILSVMLG--VYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEVD 359

Query: 369 YRLIPMVDFQQDGELLGRI-----------------RSIRKKFAQEMGFLPPVVHIRDNM 411
             L+         E L  I                 + ++K+F  + G L P + I  + 
Sbjct: 360 NSLLTENITLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSD 419

Query: 412 DLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALK 471
            +   +  IL+  V+    +     +   NP     +L               WIE   +
Sbjct: 420 KIDDDKIIILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERDDE 479

Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531
            +    GY    + +      + LI+ +  E  G QE + +LD++ +  P+L ++     
Sbjct: 480 SKLAPLGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECY-RQ 538

Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591
           V++  ++ VLQ L+ EK+PIR+++TI+  L +    + DP  LT  +R  L R I+  +F
Sbjct: 539 VSIQRINDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISY-FF 597

Query: 592 PGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPP 646
               + + I L   +E ++   ++         LEP   D ++ +    +   + +    
Sbjct: 598 STDGKFNAIILSNDMEEIIRSGIRQSSSGTLLNLEPAELDMIIEKISMVIDDIKYIQ-DY 656

Query: 647 VLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           + L +  +R  + + +    PQ+ VLS  E++ +  I +  +I
Sbjct: 657 IFLTSIDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699


>UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema
           RepID=FLHA_TREPA
          Length = 707

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/690 (35%), Positives = 382/690 (55%), Gaps = 21/690 (3%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
                 I +L+++  +V+PLP  ILD L  FN+  ++++LL+ +F ++  +F+ FP++LL
Sbjct: 11  TDAFVAISVLVVVFSIVVPLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLL 70

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN----FAIGIVVFVILVI 135
            +T+  L LNV+STR+IL  G      +G ++ AF  F+VGG+      IG  VF+IL+ 
Sbjct: 71  TSTVFGLGLNVSSTRLILTLGDR---FSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIA 127

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           +   VITKGA RIAEV ARF LD    K M+IDA+ NAG+I E+EA++R+ ++ +EADF+
Sbjct: 128 VQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQREADFF 187

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGASKFV G+   GI I ++N++ GL+VGV+        A ++YT LTIGDGL+AQ+
Sbjct: 188 GAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQL 247

Query: 256 PALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLL 315
           P+L++S A G IVTR S     G+ +  Q   +  V  + +  L ++ ++PG P+ +   
Sbjct: 248 PSLLLSVATGFIVTRSSDQGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFF 307

Query: 316 FTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND-----VQLEDSLGMEVGYR 370
                  +   +R RE+    E +  K ++   + +   +      +   D L +E+GY 
Sbjct: 308 MAVCFAFVGLQLRKRERVHVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLSLELGYG 367

Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 430
           LIP+VD ++  ELL RI  IRK  A ++G + P + I DNM L P+ Y   ++G+E+  G
Sbjct: 368 LIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARG 427

Query: 431 DAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
               G +LAI  G     +PGE T+DP FGL A+WI    +++A+  GYTVV  S ++AT
Sbjct: 428 KLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAPSAIIAT 487

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
           HL  +I  +AA++ GRQ  Q ++D + +E P + +D+      L  + KVLQ LL E+V 
Sbjct: 488 HLTQVIRTNAADILGRQNVQMIIDALRKEYPAVVDDVTQK-CPLGKIQKVLQGLLREQVS 546

Query: 551 IRDMRTILETLAEHAPIQS--DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           IR+   I ETLA+ A          L   VR  LGR I  Q+   ++ +HV+ LD+ LE 
Sbjct: 547 IRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLET 606

Query: 609 LLLQALQGGGG------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
            L + +           L      ++L   +         G  PVLL    +R  +    
Sbjct: 607 FLSEKIALTVDSLSILTLSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDTIRSAMWNLF 666

Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
                ++ V+S  E+S +  I     +  +
Sbjct: 667 FSDRIEIAVMSYKEVSTDMRIETVGVVRIE 696


>UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL
          Length = 686

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 222/687 (32%), Positives = 382/687 (55%), Gaps = 20/687 (2%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           + +    L   +L+++I++M+++PLP +++D L   NI L+I+V + + + +R L F+ F
Sbjct: 8   QVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIERILSFSTF 67

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RLAL+++++R+IL++     A AGK++  FG F++G + A+G V+F I+ 
Sbjct: 68  PSVLLITTLFRLALSISTSRLILVD-----ADAGKIITTFGQFVIGDSLAVGFVIFSIVT 122

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           ++ F+VITKG+ R+AEV ARF LDGMPGKQM+IDADL AG+I    AK+RRS + +E+  
Sbjct: 123 VVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQL 182

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YGS DGA KF++GDAIAGI+I+ +N++GG+ VG+ QHGMS+  A  +YT+LTIGDGLV+Q
Sbjct: 183 YGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQ 242

Query: 255 IPALVISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVF 313
           IPAL+IS +AG IVTRV+ D  ++G  +++Q+F NP V+++++A+   +G++PG P  VF
Sbjct: 243 IPALLISISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVF 302

Query: 314 LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP 373
            L    L  L ++ +  E++                ++ + +           +    +P
Sbjct: 303 FLIAVTLTALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVP 362

Query: 374 MV-----DFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           ++     +     ++ G I  IR +F  + G   P +  R + +L+     +L+  V   
Sbjct: 363 LILLFAENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLINEVRAD 422

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAI-WIESALKEQAQIQGYTVVEASTV 487
           S + Y  +    +       L G   V  ++    I W++ +  E        +  A   
Sbjct: 423 SFNIYFDKVCITDENGDIDAL-GIPVVSTSYNERVISWVDVSYTENLTNIDAKIKSAQDE 481

Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
               L+  +  +  E+FG QE + +LD+     P L +++    VT+  + +VLQ LL E
Sbjct: 482 FYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRH-VTIQRISEVLQRLLGE 540

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
            + +R+++ I+E+LA  AP + D   L   VR +L R I  +      E+ V+ L   +E
Sbjct: 541 NISVRNLKLIMESLALWAPREKDVITLVEHVRASLSRYICSKIA-VSGEIKVVMLSGYIE 599

Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
             + + ++   G     ++  ++D ++     AL          VLLV+  +R  + R +
Sbjct: 600 DAIRKGIRQTSGGSFLNMDIEVSDEVMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLI 659

Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATI 689
                 ++V+S  E+ +   I +  TI
Sbjct: 660 DNRFKSILVISYAEIDEAYTINVLKTI 686


>UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales
           RepID=A8LMR6_DINSH
          Length = 698

 Score =  666 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 239/693 (34%), Positives = 380/693 (54%), Gaps = 16/693 (2%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           + +      +   I++L I+ MM+LP+P+ +LD+    + +LSI++  V +F  R L+F+
Sbjct: 8   SSRHFLQPTVFFVIMLLGIIVMMILPMPSIVLDIGLALSFSLSILIFTVTLFINRPLDFS 67

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           AFPT+LL + +LRL+LNV+ST++I+ +GH G  AAG V+E F +F++GG+  +G+VVF++
Sbjct: 68  AFPTVLLASLMLRLSLNVSSTKLIIGQGHEGTHAAGGVIEGFANFVMGGSIFLGLVVFLV 127

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L+I+NF+VITKGA R+AEVGARF LDGMPGKQ+AIDAD++AG I   EAK+RR     E 
Sbjct: 128 LLIVNFIVITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAET 187

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
            F+GS+DGASKFV+GDA+AG+LI  +N++ GL++G+  H M +G A  +Y++LT+GDGLV
Sbjct: 188 TFFGSLDGASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLV 247

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
            QIPA++IS AA +++ +  +D+     +  Q   +P+ +     ++ L  L+PG+P + 
Sbjct: 248 TQIPAVIISIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIP 307

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
           F L    L G A ++  +   +P E +    A+ +   EAT  D+   D + +     L+
Sbjct: 308 FTLGAMVLGGAALYLYRKTPDSP-EGEDKPAAQTDRPREATMGDILDVDEIHVTFSTDLV 366

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDA 432
             +     G L  RI+S+R   A E G + P + + D+  L  A Y I + GVE   G  
Sbjct: 367 SSILDAAGG-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQL 425

Query: 433 YPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHL 492
           YP R L + P             +P +G  A WIE + +++  + G T V ++ V+ATHL
Sbjct: 426 YPDRILLLLPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHL 485

Query: 493 NHLISQHAAELFGRQEAQQLLDRVA--------QEMPKLTEDLVPGVVTLTTLHKVLQNL 544
             ++  + A L   +  ++L+  +         +    L E+L+P  VT  TL  +L+ L
Sbjct: 486 LEVVKGNLARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLL 545

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           L+E+V IR++  ILE +AE   I S    +   VR  L   I          + +I L  
Sbjct: 546 LEERVSIRNLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQ 605

Query: 605 PLERLL------LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLL 658
             E++        +       L P L  +L+    E + +    G  P ++ +   R  L
Sbjct: 606 EWEQIFAANSIGREDGAADVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRRRRFL 665

Query: 659 SRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           S  L     Q+ VLS  EL       +   +  
Sbjct: 666 STVLASKGLQVPVLSFEELGKTNRPSLVGVVSA 698


>UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217
           RepID=Q12T85_SHEDO
          Length = 680

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/677 (34%), Positives = 381/677 (56%), Gaps = 17/677 (2%)

Query: 19  WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78
              +   + ++ IL ++ +P+PA +LD+L   NI+ ++++LL+  +++R L+F+  P++L
Sbjct: 11  RGDVFFAVGVIAILMLLFVPIPATVLDVLIILNISFALLILLLTFYSERPLDFSTLPSVL 70

Query: 79  LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138
           L  TL RL LN+ASTR+IL +G+     AGKV+ A G ++V GN+ IG+V+F ILV++ F
Sbjct: 71  LLATLFRLGLNIASTRLILTDGN-----AGKVISAVGSYVVAGNYVIGLVIFFILVVVQF 125

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           +V+T GA R+AEV ARF LD MPGKQM+IDADLN G+I E +A++RR+ + +EA+FYG+M
Sbjct: 126 LVVTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIEKEANFYGAM 185

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGA+KFV+GDAIA I+I++INI+GGL +GV Q G+    A   YTL T+GDG+V QIP+L
Sbjct: 186 DGATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGDGIVTQIPSL 245

Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318
           +I+   G+I+TR +T  ++ +Q+  Q+ ++P  + L A V+     +PG+P+L  +L   
Sbjct: 246 IIAVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLPSLTLILVGI 305

Query: 319 GLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378
                 ++   ++Q    E    +        E T      E  L +    ++ P +  +
Sbjct: 306 TFALFGYFAHKKKQLKLIEKTFRE-------FENTKKTSTQESLLQVAFSSQIWPQILAE 358

Query: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438
            + E+  +    + +F  + G   P + ++    L+   Y I +  +E  SG  +P + +
Sbjct: 359 -ETEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNIEFASGVLHPDKMM 417

Query: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498
            I+P        G A V+PA+GLNA+W+++   +  +  G TVVE  +V+ TH+   +  
Sbjct: 418 VIDPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPISVLMTHITEFVKS 477

Query: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558
           H+AE   RQ   QL+    +    L  +++P  + +  + ++  +L+ EKV + +   I 
Sbjct: 478 HSAEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLVQEKVCLHNANHIF 537

Query: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQA----L 614
           E LA+ A  + D   LT  VR  L   +T         +++I +   LER LL      +
Sbjct: 538 EVLADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPLLERALLNGAANVI 597

Query: 615 QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
             G  + P   D L+ Q    + +   LGA PVLLVN  +R  L + L R++P L V+S 
Sbjct: 598 TKGLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIRRPLWQLLNRTVPLLHVISV 657

Query: 675 LELSDNRHIRMTATIGG 691
            E+  +  +     I  
Sbjct: 658 NEVPHHIKLNSLGVIQA 674


>UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales
           RepID=Y4YR_RHISN
          Length = 697

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 218/693 (31%), Positives = 371/693 (53%), Gaps = 25/693 (3%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +A  LR            L   +++LL +SMMV+P+P   +D L  FN+ L++++L+ A+
Sbjct: 1   MANALRRFTEYAPAN-PDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAAL 59

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
           +    L+F++ P ++L +T+ RLAL VA+TR+IL EG      AG ++  FG F++ GN 
Sbjct: 60  YVSTPLDFSSLPGVILLSTVFRLALTVATTRLILAEG-----EAGSIIHTFGSFVISGNI 114

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
            +G V+F+++ ++ FMV+ KGA R+AEV ARF LD +PGKQMAIDA+L  G I  DE+++
Sbjct: 115 VVGFVIFLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRR 174

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           RR+ + +E+  YG+MDGA KFV+GD+IAG++++ IN++GG+ +G+L  GMS       YT
Sbjct: 175 RRAALEKESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYT 234

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGL 301
           LLTIGD L++QIPAL++S  A  +VTRV  ++  ++GE + NQL ++   + L+A VL  
Sbjct: 235 LLTIGDALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVA 294

Query: 302 LGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLED 361
           +G VPG P  VF      +L   +      +    +   V           T N     +
Sbjct: 295 MGFVPGFPLPVFF-----MLAAVFAAASFVKGDVLDADKVDATTVTPAESQTPNVAAQPN 349

Query: 362 SLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRIL 421
            +G+ +   L   +D     EL   I  I +  + ++G + P + +  +  L  +++RI 
Sbjct: 350 PIGVFLAPSLTNAIDQV---ELRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRID 406

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           ++GV +      P + L++          G          + IW+E + +   +  G   
Sbjct: 407 VEGVPVEQDLINPAQ-LSLADDLKKIESSGIPFRHD-PETHRIWVEQSHEPALKAAGIRH 464

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
              S ++A  ++  ++ HA  L G QE +QLL R+ QE   L ++++     +  +  VL
Sbjct: 465 HSPSELLAMRVHATLTCHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTT-PIPRIADVL 523

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           + LL E +PIR+ R +LE LAE +  + +   LT  VR  + R I  ++      +    
Sbjct: 524 RRLLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVRSGMKRQICHRY-GRHGVLPAFV 582

Query: 602 LDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           ++   E ++  A++         LE   ++ LL+Q ++  S        P++L +  +R 
Sbjct: 583 MERETEDVVRCAVRETAAGPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRR 642

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            +  FL R+  +L VLS  +L+ +  I+   +I
Sbjct: 643 FVRGFLTRNGIELAVLSYQDLASDFKIQPVGSI 675


>UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp.
           NGR234 RepID=C3KN99_RHISN
          Length = 714

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/708 (32%), Positives = 377/708 (53%), Gaps = 30/708 (4%)

Query: 3   NLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62
           ++ A +   A   +++   +    +++L ++MM++P+P F++D+L  FN   S+++L+ A
Sbjct: 2   SVIAAVNQFAR-AASRRSDIVVAAVVMLAITMMIIPMPTFLVDMLIGFNFFYSLLILVGA 60

Query: 63  MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122
           ++     +F++ P+I+L  TL RLAL + +TR+IL E     A AG++V AFG F+VGG+
Sbjct: 61  LYISSPAQFSSLPSIILLGTLFRLALAITTTRLILTE-----ADAGQIVAAFGSFVVGGD 115

Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182
             +G++VF+I+ I  F+VITKGA R+AEVGARF LD MPGKQM+ID +  +G I + EA+
Sbjct: 116 VLVGLIVFLIITIAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEAR 175

Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESY 242
           ++R ++ +E+ FYG+MDGA KFV+GDA+AG++I+ IN++GGL +G LQ G+++G AA +Y
Sbjct: 176 RKRDDLERESQFYGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTY 235

Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +LLT+GDGL++QIPAL+++ AAG +VTRV +    QD+  +++ QL ++   + L+AA+L
Sbjct: 236 SLLTVGDGLISQIPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAIL 295

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVV--------- 350
              GLVPG P +VF         LA+  R R+             E   V          
Sbjct: 296 FGFGLVPGFPLIVFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHI 355

Query: 351 ----EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVH 406
                   +D+ +   L + +G  L   +          R  S+ +   +++G   P + 
Sbjct: 356 AGNLPGAGSDLGMAHRLTLTMGEGLGERLPP---PLFAERTESLAEAILEDLGIRVPAIG 412

Query: 407 IRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPA-FGLNAIW 465
              +  L  A +RI  +GV +  G   P   +A +       L       P   GL  +W
Sbjct: 413 RLTDARLATAEFRIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVW 472

Query: 466 IESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTE 525
           I+ +        G    EA+ VV T +  ++ ++A +    QE + LL R+      LT+
Sbjct: 473 IDRSHAAALDAAGVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTK 532

Query: 526 DLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRA 585
           +++  VV+   L  VL+ L++E VPI +MR IL+T+AE      +   L   VR  LGR 
Sbjct: 533 EVL-DVVSAQRLSDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQ 591

Query: 586 ITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEML--- 642
           I  +       V    L  P E  L  A++   G    + +RL A   E L ++      
Sbjct: 592 ICFRLADSNRIVSAYLLTRPFEDELRAAVEKNSGPAGAVPERLAAPILEELKKRREKAGA 651

Query: 643 GAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +   +L +  LR  +   L R   Q+ VLS  E++    ++    I 
Sbjct: 652 QSRAAILTSMDLRRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYIA 699


>UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1
           Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL
          Length = 703

 Score =  656 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/696 (33%), Positives = 366/696 (52%), Gaps = 32/696 (4%)

Query: 18  QWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTI 77
               L    LI++I+ M+V+PLP  +LD L   N+   ++VL+ A+     L  + FP I
Sbjct: 16  SKPELVVLCLIIMIIGMLVMPLPPGLLDFLIAVNMIGGVLVLMSALHVVNMLSLSTFPAI 75

Query: 78  LLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIIN 137
           +L TTL RLAL+++S R+ILM GH     AG++++ FG F++G N  +G+V+F I+ I+ 
Sbjct: 76  VLLTTLFRLALSISSCRLILMYGH-----AGQIIQTFGEFVIGQNIVVGLVIFSIVTIVQ 130

Query: 138 FMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGS 197
           F+VITKGA R+AEV ARF LD MPGKQM+IDAD  AG+I  D  + RRS + +E+  YGS
Sbjct: 131 FIVITKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLYGS 190

Query: 198 MDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPA 257
            DGA KF++GDAIAGILI+ IN++GG+++G++++ +S   +  +Y++L++GD LV QIPA
Sbjct: 191 FDGAMKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQIPA 250

Query: 258 LVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLF 316
           L+IS  AG +VTR+S ++Q++G  +V++L S+  V+L+S+ +  L+GL+PG P  VFL  
Sbjct: 251 LLISMGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFLTV 310

Query: 317 TAGLLGLAWWIRGREQKAPAEPKPVKMAENN--------TVVEATWNDVQLEDSLGMEVG 368
           +A L    W     E+ A AE +                   +A          LG  + 
Sbjct: 311 SASLGFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDTAFLGHPLV 370

Query: 369 YRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHI-------RDNMDLQPARYRIL 421
             L                 S+  +   E+G L P + +         +     AR R++
Sbjct: 371 VILPHACAHTPSLSPQNLATSLHARVFDEVGLLLPTIVVGFAAADAIVSDAQDDARQRVV 430

Query: 422 MKGVEIGSGDAYP---GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQG 478
           ++  ++ +   Y    G  L  +     G     + +    G  A W+  A   Q Q  G
Sbjct: 431 IRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV-MAQPAQLQDIG 489

Query: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLH 538
                A   +      +I ++ +E FG QE + LLD +    P+L +++    + +  L 
Sbjct: 490 IAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKEVY-RQIPVQKLC 548

Query: 539 KVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVH 598
           ++L+ LL E+V IR+M+ ILETLA     + D   LT  VR+ALGR I+ +       + 
Sbjct: 549 EILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHRIA-RNGHMK 607

Query: 599 VIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653
           VI L    E  + Q ++         L P +A+ L+ +   AL++   +    VLL +  
Sbjct: 608 VIVLTPEFEEKVRQGIKHTSTGTFLNLTPTVANELVDRITVALNQLHAVRRDFVLLASMD 667

Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           +R      +    P L V+S  E+SDN  + +   I
Sbjct: 668 VRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703


>UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera
           aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC
          Length = 699

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/692 (43%), Positives = 459/692 (66%), Gaps = 4/692 (0%)

Query: 1   MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           + N++ +      +       L  P LIL IL +++LPLP F+LDL FTFNI  SI++L+
Sbjct: 7   IKNISLLFNYFKKIIYKNLNSLFFPFLILSILCLLILPLPTFVLDLFFTFNIIFSIIILI 66

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           V++F  + L+F++FPTILLF+TL RL+LN++STRIIL+ GHTG+ +AG V+E+FG FL+ 
Sbjct: 67  VSIFVVKILDFSSFPTILLFSTLFRLSLNISSTRIILLNGHTGSCSAGHVIESFGFFLIR 126

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GNF IGI++F++LVIINF VI+ G+ RIAEVGARF+LD MPGKQMAIDADLN+GLI E +
Sbjct: 127 GNFFIGIIIFIMLVIINFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQ 186

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           AKKRR E+ +EA+FYGSMDGASKF+RGDAIAGI+IM++N++GGLL+G++Q+ MS+  A +
Sbjct: 187 AKKRRLEIHKEAEFYGSMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIK 246

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQ-DVGEQMVNQLFSNPSVMLLSAAVL 299
            Y++LTIGDGLV+QIP+L+IS A+G+I+TR ++D+ ++GE+++ Q+F+N  V+  S+ + 
Sbjct: 247 IYSILTIGDGLVSQIPSLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIF 306

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQL 359
              GL+PGMPN +FL F+     L+W+I  R +        +   +    ++ +WND++ 
Sbjct: 307 CFFGLIPGMPNFIFLFFSVLFFILSWYINYR-KNINKNFSKILKFKKRKKIDISWNDIEF 365

Query: 360 EDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYR 419
           ED L +E+      +   ++   L+ +++ +RK  AQ+ GFL P ++I  N  L   +Y+
Sbjct: 366 EDLLRIELSSIFFKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYK 425

Query: 420 ILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
           I +KGVE+ SG  +  + L IN       + G    D  F     WI   +K+    +  
Sbjct: 426 IFIKGVELFSGFIFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKI 485

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
             ++++ ++  + N +I  +   LFG QE QQLLDR++Q  PKL + L+P ++++ T   
Sbjct: 486 VFLDSNVLIIKNFNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQN 545

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQS-DPHELTAVVRVALGRAITQQWFPGKDEVH 598
           +LQNLL + + I+D+RTI+ETL +++     +  ELT ++R+AL   ITQ++F     ++
Sbjct: 546 ILQNLLKDDISIKDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYIN 605

Query: 599 VIGLDTPLERLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPL 657
           VIGL T  E +LL+ +      +EP  +++L+ +T+ A+  Q+    P VLLVN  +R L
Sbjct: 606 VIGLSTNFENILLKFVGNNKNQIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVL 665

Query: 658 LSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           LS F       L VLS  E+S+NR I++T  I
Sbjct: 666 LSNFFLNCNIILPVLSFSEISENRVIKITQFI 697


>UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL
          Length = 707

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 219/684 (32%), Positives = 374/684 (54%), Gaps = 18/684 (2%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           ++     +   +++LL + MM++P+P  ++D+L  FN+  +I++L+VA++    L+F++ 
Sbjct: 11  RAPAHPDIMVALMLLLAIGMMIMPIPIIVIDMLIGFNLGFAILLLMVALYLSTPLDFSSL 70

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P ++L +T+ RLAL +A+TR+IL EG      AG ++  FG F++ GN A+GIV+F+I+ 
Sbjct: 71  PGVILISTVFRLALTIATTRLILAEG-----DAGSIIHTFGDFVISGNIAVGIVIFLIVT 125

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           ++ FMV+ KGA R+AEV ARF LD +PGKQMAIDA+L    I + EA++RR+ + QE+  
Sbjct: 126 MVQFMVLAKGAERVAEVSARFTLDALPGKQMAIDAELRNNHIDQHEARRRRAALEQESQL 185

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           +G+MDGA KFV+GDAIAG++++ IN++GG+ +G+L   MS+  A   YTLLTIGD L++Q
Sbjct: 186 HGAMDGAMKFVKGDAIAGLIVICINMLGGISIGLLSKDMSLDAAMHHYTLLTIGDALISQ 245

Query: 255 IPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           IPAL++S  A  IVTRV+      +G  +V+QL ++   + L+A VL L+G VPG P   
Sbjct: 246 IPALLLSITAATIVTRVNGPSKLKLGADIVSQLTASTQALRLAACVLLLMGFVPGFPLPP 305

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
           F++        ++   G +   PA      +  +           Q   +  + +   L 
Sbjct: 306 FVILAVLFAAASYVKVGAKGDEPAAKTGANVTASAPAPAQAQAQKQAAHAEALPIALFLA 365

Query: 373 PMVDFQQDGE-LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGD 431
           P +    D + L   I  +    + ++G   P +  R + +L  +++RI +  V +    
Sbjct: 366 PNLTHSIDKDELEQSIARVSTSVSADLGITVPRIPARIDQNLSKSQFRIDVDSVPVERDV 425

Query: 432 AYPGRWLAINPGTAAGTLPGEATV-DPAFGLNAIWIESALKEQAQIQGYTVVEASTVVAT 490
             P + L +N   A   L G     DP      +WIE       +  G        ++A 
Sbjct: 426 INPTQ-LVLNDDIANIELSGIPFRQDPETAR--VWIEERHAAALKAAGIGHHRPVEILAL 482

Query: 491 HLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVP 550
            L+  ++++A  L G QE +QLL R+ QE   L ++++    T+  + +VL+ LLDE +P
Sbjct: 483 RLHSTLTRYAQRLVGIQETRQLLARMEQEYADLVKEVLRTA-TIPRIAEVLRRLLDEGIP 541

Query: 551 IRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL 610
           IR+ R +LE LAE +  + +   LT  VR AL R I  ++      V    ++   E ++
Sbjct: 542 IRNTRLLLEALAEWSEREQNAVLLTEYVRAALKRQICFRYANAHRVVAAFIIERETEEIV 601

Query: 611 LQALQGGG-----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRS 665
             +++         L+   +++LL+Q ++  S      + PV+L +  +R  +  FL R+
Sbjct: 602 RVSVRETAVGPYLVLDDWQSEKLLSQFRQIHSTIAQSQSQPVILGSMDIRRFVRGFLTRN 661

Query: 666 LPQLVVLSNLELSDNRHIRMTATI 689
              L VLS  +L+    ++   ++
Sbjct: 662 GLDLPVLSYQDLASEFTVQPIGSV 685


>UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria
           RepID=HRCV_RALSO
          Length = 690

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/691 (32%), Positives = 358/691 (51%), Gaps = 21/691 (3%)

Query: 11  PANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLE 70
             N        +    L++ ++++MVLPLP  ++D L   NI LS+++L+V M+      
Sbjct: 3   KKNAIQDFSGEIGIAALVVAVVALMVLPLPTMLIDALLGLNITLSVVLLMVTMYIPSATS 62

Query: 71  FAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVF 130
            +AFP++LLFTTLLRL+LN+AST+ IL+      A AG ++E+FG  +VGGN  +G+VVF
Sbjct: 63  LSAFPSLLLFTTLLRLSLNIASTKSILLH-----ADAGHIIESFGKLVVGGNLVVGLVVF 117

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           +I+  + F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG +  +EA+KRR+ +  
Sbjct: 118 LIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAGHLSPEEARKRRALLAM 177

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           E+  +G MDGA KFV+GDAIAG++I ++NI+ G+++G+  H M+ G AA  + +L+IGD 
Sbjct: 178 ESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGDA 237

Query: 251 LVAQIPALVISTAAGVIVTRVSTDQ------DVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           +V+QIP+L+IS AAGV++TRVS ++       +G ++V QL ++   M  ++A+L    L
Sbjct: 238 MVSQIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFAL 297

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDS-L 363
           VPG P+ +F+     +    + +R R ++   +      A      +     +  +    
Sbjct: 298 VPGFPSFLFVALATLIFVFGYTLRNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPSF 357

Query: 364 GMEVGYRL-IPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILM 422
            + VG RL   +        L    +  R   A+ +G   P + I     LQP  Y + +
Sbjct: 358 TVPVGVRLGAELAKGLDVPALDTAFQQGRHALAEALGLPFPGIAIWKADALQPDSYEVRV 417

Query: 423 KGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVV 482
             +         G  L  +   A      EA   P       WI  A   Q      T  
Sbjct: 418 HDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAP-HWIAPAHVAQDAALSATGQ 476

Query: 483 EASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQ 542
               V+A H+ H++ + A    G QE Q +L+RV  + P L  +     V    +  VL+
Sbjct: 477 RVERVIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEA-QKAVPAQRIADVLR 535

Query: 543 NLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
            LL+E+VPIR+MR ILE+L    P + D   L   VR  LGR I  Q   G  ++  I L
Sbjct: 536 RLLEEQVPIRNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPAILL 595

Query: 603 DTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALS-RQEMLGAPPVLLVNHALRP 656
           D  +E+ + QA++         L+P   + ++ + +  +        +   ++ +  +R 
Sbjct: 596 DLSVEQTVRQAIKPTPAGNFLTLDPQQVEAIIMRLRGIMQGNPVETPSALAIVTSMDIRR 655

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTA 687
            + R +   L  L V S  EL     +R   
Sbjct: 656 YVRRMIEPHLQALNVYSFQELGGYVDLRPVG 686


>UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria
           RepID=Q48IR5_PSE14
          Length = 727

 Score =  648 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/703 (31%), Positives = 382/703 (54%), Gaps = 39/703 (5%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
           +++   +     +L+ ++MM++P+P +++D L   NIALS+++L+VA +   ++EF+A P
Sbjct: 14  ASKRTDVIIVAFMLMAIAMMIIPMPTYLVDALIGVNIALSLLILIVAFYINHSVEFSALP 73

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
            ++L +TL RL+L++ +TR+IL++G+     AG +V+AFG F++ G   +G+VVF+I+ +
Sbjct: 74  PLILLSTLFRLSLSITTTRLILLDGN-----AGHIVKAFGDFVIAGQVVVGLVVFLIITV 128

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
             F+VITKGA R+AEV ARF LD MPGKQM+ID DL  G I   EA++RRS + +E+  +
Sbjct: 129 AQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLERESQMF 188

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           G+MDGA KFV+GDAIAG++I+ +N++GG+++G++Q GM    AA  Y+LLT+GDGL+AQI
Sbjct: 189 GAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGDGLIAQI 248

Query: 256 PALVISTAAGVIVTRVSTDQ---DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           PAL+IS AAG +VTRV++D    D+  ++V QL ++   + L+A +L  +G++PG P LV
Sbjct: 249 PALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLPGFPLLV 308

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATW------------------ 354
           F+   A L G A+ +  R+++A       ++ E+ T+ E                     
Sbjct: 309 FVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAAEDALES 368

Query: 355 NDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQ 414
            +   +  + + +G  L      Q    L  RI ++       +G   P+  +  +  L 
Sbjct: 369 AERPRDSQVLLSIGTGLAEAAPLQ---PLRQRIEALCHDIRINLGVEVPLPEVYLDRSLP 425

Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD---PAFGLNAIWIESALK 471
             R+++ ++GV +  G+   G  L +        L    T +   P       W      
Sbjct: 426 VDRFQVELEGVPVSEGEFS-GMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWAGREHA 484

Query: 472 EQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGV 531
           ++ Q  G   + A  V+   L+  + ++AA+  G QE + +L+++  +  +L ++++  +
Sbjct: 485 DRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKEVL-RI 543

Query: 532 VTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWF 591
           + L  + + L+ L+ E V IR  R +LE++ E   I+SD   LT  +R  L R I+ Q+ 
Sbjct: 544 LPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQISHQYA 603

Query: 592 PGKDEVHVIGLDTPLERLLLQAL----QGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV 647
                +    L   LE  L   L    +    L   +   +L Q +             V
Sbjct: 604 DRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDIGRTVLVQLRRLC-DMLPEHDLTV 662

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           LLV+  LR  + R + R   QL VLS  EL+   +++   T+ 
Sbjct: 663 LLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTVS 705


>UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105
           RepID=A6GN34_9BURK
          Length = 705

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 375/701 (53%), Gaps = 26/701 (3%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +  +L   A L S     + G  LI+L++ MMV+P+   ILD+L   NI++S+++++ A+
Sbjct: 1   MIEVLNRFARLASA-RSEVVGASLIILMIVMMVIPMGPGILDVLLAINISVSVVLVISAV 59

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
             +  L F++FP +LL TTL RL+L +++TR IL+EG      AG +V+ FG F+VGGN 
Sbjct: 60  LIETPLAFSSFPALLLMTTLFRLSLTISTTRQILLEG-----DAGHIVQTFGEFVVGGNV 114

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
           A+G+ +F+I+ ++NF+VITKG+ R+AEV ARF LDGMPGKQM+ID+DL AGLI +  AK+
Sbjct: 115 AVGLTIFLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQ 174

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           RRS++ +E+  +G+MDGA KFV+ DAIAG++I V+N++GGL VG++Q GMS   A   YT
Sbjct: 175 RRSDLEKESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYT 234

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV----STDQDVGEQMVNQLFSNPSVMLLSAAVL 299
           +L++GDGLVA IP+L++S AAG+IVTRV    +   +  + M+  L  N + + +S    
Sbjct: 235 ILSVGDGLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFC 294

Query: 300 GLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATW--NDV 357
            L   VPGMP+ VFL  +A LL   ++I  +  KA       + ++  +    +   +D+
Sbjct: 295 FLFAFVPGMPSYVFLATSATLLCGWYFISRKTDKAEEVDVSTQFSDMLSASGKSIKMDDI 354

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
              ++    +  RL   ++     ++    R  R +  +++G L P+    ++ +     
Sbjct: 355 LHTNTFA-PLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFPLFEFINHTESFVEF 413

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEAT---VDPAFGLNAIWIESALKEQA 474
           Y   + GV   S      R    +  +    +PG       D   G   +  +   K   
Sbjct: 414 Y---VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKTLL 470

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
                  +   T + + +  L+ Q   +LF   E Q+ +  +  +  +  ++L   V+ +
Sbjct: 471 DQHKLEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKEL-ERVLPV 529

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594
           T + +VLQ LL E V I++MR+IL +L E    + DP  +   VR  L   I  Q    +
Sbjct: 530 TKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQHT-HE 588

Query: 595 DEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLL 649
            ++ V  L    E+L+ ++ +  G      ++    + L+   +E      +    P ++
Sbjct: 589 RKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDSSSLNELIEIVEEQCRPHLVGNYVPAIV 648

Query: 650 VNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +   R    + ++ SL  + VLS+ E+S N  I++   I 
Sbjct: 649 CSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNIN 689


>UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group
           RepID=A0RCA3_BACAH
          Length = 693

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/694 (31%), Positives = 365/694 (52%), Gaps = 22/694 (3%)

Query: 12  ANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           +  K    +      L    +  +++PLP FILD++  F +++S+++ + A       E 
Sbjct: 5   SLFKIDSARTYFSIFLAASFVVALLIPLPPFILDIIIVFLLSMSVLIYMRATSINEWDEL 64

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
            +FPT+LL   + R+++NV++TR IL  G+     AG V+E FG F++GGN  IGIV+F 
Sbjct: 65  KSFPTMLLLIGIFRVSINVSTTRAILTNGN-----AGHVIEEFGQFVIGGNLLIGIVIFT 119

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           +L+I  F+V   GA R AEV ARF LD +PGKQM+IDADLN  +I E +A+ +R ++  E
Sbjct: 120 VLIIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLNME 178

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
            +FYG+MDGA KF++GD I GI+I+ +NI+ GL+VG++Q GMS G AA  YT LT+GDG+
Sbjct: 179 TEFYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGDGI 238

Query: 252 VAQIPALVISTAAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMP 309
           V QI +L+++ + G+IVTRV   +   V E +  +L ++  V+     +   +G+   +P
Sbjct: 239 VNQIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTPLP 298

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVK------MAENNTVVEATWNDVQLEDSL 363
            L F L    ++ L    + R +K   +    +        E    VE ++     +  +
Sbjct: 299 FLPFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKYPI 358

Query: 364 GMEVGYRLIPMVDFQQDGEL-LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRIL 421
            +E+G  L  +V  + +GE    ++  +RK    ++G   P ++ +DN   +P  RY I 
Sbjct: 359 IVELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYIIR 418

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTV 481
           +KG +   G    G  LA+        L  E   DP FG +  WI   + + AQ++GY V
Sbjct: 419 IKGAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGYQV 478

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           +E  +++ THL+ ++ ++  EL  RQ  + L++ +  +   L E++    + L+ +  V+
Sbjct: 479 LEPLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQNVI 538

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDP-HELTAVVRVALGRAITQQWFPGKDEVHVI 600
           + LL E + IRD+ TI+E + +   I  +    +T+ VR  + + I +       +++  
Sbjct: 539 KQLLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIYAA 598

Query: 601 GLDTPLE---RLLLQALQGG-GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH-ALR 655
                +E    ++  + QG     +  L  R++ Q Q    +  ++G  PVLL      R
Sbjct: 599 LFSDSIELDADVVNNSYQGYLLNWDLDLETRVVEQVQRVFKQARLMGREPVLLTRRKDFR 658

Query: 656 PLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             + R L R   +  VL   EL+    +   A I
Sbjct: 659 FAIVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692


>UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae
           RepID=Q2NR60_SODGM
          Length = 665

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 211/677 (31%), Positives = 355/677 (52%), Gaps = 29/677 (4%)

Query: 19  WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTIL 78
              L   +L++ I+ M+++PLPA+++D L   NI ++++V + A +  R L F+ FP +L
Sbjct: 12  RPELLILVLVITIIFMIIIPLPAYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVL 71

Query: 79  LFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINF 138
           L TTL RLAL ++++R+IL +     A AG+++  FG F++G N  +G V+F I+ ++ F
Sbjct: 72  LITTLFRLALTISTSRLILTD-----ADAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQF 126

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           +VITKG+ R+AEV ARF LDGMPGKQM+IDADL  G+I  + A++RRS + +E+  YG+ 
Sbjct: 127 IVITKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQLYGAF 186

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGA KF++GDAIA I++  +N +GG+ VG+ QH M +  A  ++TLLTIGDGLV QIPAL
Sbjct: 187 DGAMKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQIPAL 246

Query: 259 VISTAAGVIVTRVSTD-QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFT 317
           +IS +AG+IVTRV+ D  ++G  ++ QL  NP V+L++A +   +G++PG P  VF++  
Sbjct: 247 LISISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVMLA 306

Query: 318 AGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377
             L  L    + + +  P                  + +  + ++L + +          
Sbjct: 307 MALGTLLLMRQRQTRVVPLPAAADYAGG--------YPERIMPEALAVILQVSRANYARL 358

Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437
           +++         +R +F  + G   P + +            +++  +       +    
Sbjct: 359 EKE----QLCERLRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNEIRADVFTLHFDML 414

Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
             + PG      P    V       A+W     +E+    G  +  A   +      +++
Sbjct: 415 RRVIPGDR----PCPPDVTLHQEQEAVWAALDDRERLLATGCVLRPAVDELYHCFAVMLT 470

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
            H  E FG QE + LLD++    P L ++++    T+  + ++LQ LL E++ IR ++ I
Sbjct: 471 HHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHA-TVQRIAELLQRLLMERISIRHLKLI 529

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
           +E +A  AP + D   L   VR AL R I  Q+    + + VI L + +E  L  +L   
Sbjct: 530 MEAMALWAPREKDVSALVEHVRCALARYICHQFA-ADNLLRVIMLSSEVEETLRDSLHTT 588

Query: 618 GG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVL 672
                  L P +++ L+     AL    +     VLL    +R  +   ++     L VL
Sbjct: 589 SAGTFLNLGPQVSEELMELFTSALESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEVL 648

Query: 673 SNLELSDNRHIRMTATI 689
           S  EL+++  + +  TI
Sbjct: 649 SFGELTESVTVNVIKTI 665


>UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN
          Length = 687

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/692 (33%), Positives = 363/692 (52%), Gaps = 38/692 (5%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
           +   +  +      + I+ +M+LPLP  I+D L   NIA+   +LL+A++    + F++F
Sbjct: 19  RRAGYSDVVLAFAAVTIIGVMILPLPLAIIDTLVAVNIAIGFGLLLIALYIPTPVAFSSF 78

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           P++LL TTL RL+L++A TR IL+E +      G +VE FG  + GGN  +G VVF+I+ 
Sbjct: 79  PSVLLLTTLFRLSLSIAITRSILLEAN-----GGHIVETFGSLVAGGNLVVGFVVFLIIT 133

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           ++ F+VI KGA R+AEV ARF LD MPGKQ++ID+DL AGLI +DEAK++R  +  E+  
Sbjct: 134 VVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLEVESQL 193

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           +GS+DGA KFV+GDAIAGI+I++IN++GGL +GVLQ GM +  A  +Y++LTIGDGLV+Q
Sbjct: 194 HGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGDGLVSQ 253

Query: 255 IPALVISTAAGVIVTRVSTDQD---VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           IPA++ + AAG++VTR + D+D   +GE +  Q+   P V+L++  +   +  VPG P L
Sbjct: 254 IPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVPGFPKL 313

Query: 312 VFLLFTAGLLGLAWWIRGREQK-APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYR 370
           VFL+ +  LLG A W             K  +            +++     L +E+   
Sbjct: 314 VFLMLSVVLLGFAAWRYRHHHPVLRRAFKVPEGERPAEEKTVNEDEIAPPAPLQLELAPS 373

Query: 371 LIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNM----DLQPARYRILMKGVE 426
           L        +     RI  I ++  +E G   PV  ++ +     D     YR+   G  
Sbjct: 374 LAAAF---GEHAARTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGGYRLTAFGAR 430

Query: 427 IGSGDAYPGRWL--AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
           +  G   P      A      A  LPG     P  G    W            G  + + 
Sbjct: 431 LAFGRLSPNAQFRPARAGDANAPKLPG--FFPPLAGE---WTG--------QAGADIRDG 477

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
              V+ H    + +  A   G QEA  L  R+ ++ P L ++++  VV    +  VL+ L
Sbjct: 478 LATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEML-RVVAPQRVADVLRRL 536

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           ++E VPIR++R   E + +    + D   LT  VRVAL R I  ++  G+  + V+ +  
Sbjct: 537 VEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQVLLIHP 596

Query: 605 PLERLLLQALQ-----GGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
            LE  L Q+++         + P LA RL A+ +  L+R +  G  PVLL +  +R  L 
Sbjct: 597 ELEDRLRQSVRVAGGATQLAISPELAGRLGAEVRSHLAR-QGEGIKPVLLCSLDVRRHLR 655

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           + L     +L VLS  EL+ +  I     +  
Sbjct: 656 KLLEIDFFELPVLSYQELAPDLRIVQAGQVNA 687


>UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans
           PD1222 RepID=A1B5C1_PARDP
          Length = 694

 Score =  638 bits (1645), Expect = 0.0,   Method: Composition-based stats.
 Identities = 245/682 (35%), Positives = 368/682 (53%), Gaps = 17/682 (2%)

Query: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81
           L    ++LLI+  MV+P+ A +LDL    +IA + ++L++A   ++  +F AFP +LL +
Sbjct: 16  LIITGVLLLIVLSMVIPMSARLLDLGIALSIASATLILVMASLVEKPTDFQAFPVLLLVS 75

Query: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141
            L+RL+LN++STR+IL  G  GA AAG V+EAF  F+ GG+  +G+ VF ++ ++NFMVI
Sbjct: 76  LLIRLSLNISSTRLILTNGQNGANAAGHVIEAFAEFVAGGSLLVGLTVFAVITVVNFMVI 135

Query: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201
           TKG+GR+AEV ARF LD +PGKQ+AID DLN+G I  DEAK+RR+   +E  F+GS+DGA
Sbjct: 136 TKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFFGSLDGA 195

Query: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261
           SKFV+GDAIAG++I +IN+  GL  GV+ HGM +  A  +Y+ LTIGDGLV+QIPAL+ S
Sbjct: 196 SKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQIPALITS 255

Query: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321
            AA ++++R    +   + +  Q  SN  V  + A  +  +GLVPGMP LVF    A L 
Sbjct: 256 MAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMPTLVFFGLAAVLG 315

Query: 322 GLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI-PMVDFQQD 380
             AW+IR R+ K   E      +      +    DV   D + +E+G  LI   +D  + 
Sbjct: 316 VAAWFIRARQDKTRPEDAAPVESHAAASAQTRIGDVLDTDEICVEIGAGLILSALDPVRG 375

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
             L  RI ++R   A+  G + P V I D    Q   Y + ++GV  G G   P   LA+
Sbjct: 376 --LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQGVVRGKGVLRPQGVLAL 433

Query: 441 NPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHA 500
                   L GE   +P +G  A WI    +++A I G TVV    V++THL  ++  + 
Sbjct: 434 GAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTPMEVLSTHLMEVVKTNL 493

Query: 501 AELFGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIR 552
             L      Q+++  +        AQ   +  + +VP  V    L  VL+ LL+E++ +R
Sbjct: 494 PALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEMLLAVLRGLLEERISVR 553

Query: 553 DMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLL-- 610
           ++  I + + E A   + P  +   VR  L   IT+Q+      + ++ L    E  +  
Sbjct: 554 NLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGYLELLQLHPQWEAEIAR 612

Query: 611 --LQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
              ++ + G G  P +  RL    Q  LS     G   VL V    R L+   L  +   
Sbjct: 613 SEAESARAGNGAIPQIQKRLADALQATLSGLPP-GIEVVLAVPDHRRRLVRMMLSSAGIA 671

Query: 669 LVVLSNLELSDNRHIRMTATIG 690
             VL   E+     +R+  T+G
Sbjct: 672 TPVLGLDEIDPGAQVRLRGTVG 693


>UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group
           RepID=A3P6H9_BURP0
          Length = 705

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 223/716 (31%), Positives = 366/716 (51%), Gaps = 45/716 (6%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           +  +LK      +    L++ I+S+M+LPLP   +DLL   NI +S+ +L+V M+     
Sbjct: 1   MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIA 60

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
             +AFP++LLFTTL RL+LN+AST+ IL+      A AG ++E+FG  +VGGN  +G+VV
Sbjct: 61  ALSAFPSLLLFTTLFRLSLNIASTKSILLH-----AEAGNIIESFGQLVVGGNLVVGLVV 115

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F I+  + F+VI KG+ R+AEVGARF LD +PGKQM+IDADL +GL+  +EA+K+R+ + 
Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
            E+  +G MDGA KFV+GDAIAG++I +INIV G+ VGV  HGMS G AA  +++L++GD
Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235

Query: 250 GLVAQIPALVISTAAGVIVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
            +V+QIP+L++S AAGV++TRV+ +     + +G+++ +QL S+   +  +A +L     
Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGR-----EQKAPAEPKPVKMAENNTVVEATWNDVQL 359
           VPG P  +F+L  A L    + +  +           E + ++  + +         +  
Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355

Query: 360 EDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARY 418
                  VG R+ P +        L   +   R +   E+G   P V +  +  L  A +
Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415

Query: 419 RILMKGVEIGSGDAYPGRWL------------AINPGTAAGTLPGEATVD-----PAFGL 461
            +L+  V   S      + +            A+     A         +      A G 
Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475

Query: 462 NAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMP 521
              WI+    E A     +V  A  ++A      I  HA    G QE Q +LD++  + P
Sbjct: 476 ATHWID----EPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531

Query: 522 KLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVA 581
            L  +++  ++  T +  VL+ LL+E++ IR++RTI+E+L      + D   LT  VR  
Sbjct: 532 GLVAEVL-KILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGD 590

Query: 582 LGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEAL 636
           L R +  +   G+  +  +  D   E+ + QA++         L P  A RL+ + Q  +
Sbjct: 591 LSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDASRLVDRIQSLV 650

Query: 637 SRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
                      L+ +  +R  + R + R +  L V S  EL ++  +R    +  +
Sbjct: 651 G--ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQ 704


>UniRef50_P74856 Secretion system apparatus protein ssaV n=63
           Tax=Gammaproteobacteria RepID=SSAV_SALTY
          Length = 681

 Score =  624 bits (1610), Expect = e-177,   Method: Composition-based stats.
 Identities = 216/676 (31%), Positives = 371/676 (54%), Gaps = 28/676 (4%)

Query: 17  TQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPT 76
              Q +    ++L+ + MM+LPLP +++D+L T N+  S+++LL+A++    L+ + FP+
Sbjct: 19  AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS 78

Query: 77  ILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVII 136
           +LL TTL RL+L ++++R++L++ +     AG +V+AFG F+VGGN  +G+VVF I+ I+
Sbjct: 79  LLLITTLYRLSLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVGLVVFTIITIV 133

Query: 137 NFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYG 196
            F+VITKG  R+AEV ARF LDGMPGKQM+ID DL AG+I  D A+  R  V QE+ F G
Sbjct: 134 QFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLG 193

Query: 197 SMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIP 256
           +MDGA KFV+GD IAGI+++++NI+GG+++ ++Q+ MSM  A  +Y++L+IGDGL  QIP
Sbjct: 194 AMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIP 253

Query: 257 ALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFL 314
           +L+IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++L+A VL LL L+PG P +   
Sbjct: 254 SLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLA 313

Query: 315 LFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPM 374
            F+A L      I  R +K+      V+  E +++V      +                 
Sbjct: 314 FFSALLAL--PIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSP------------ 359

Query: 375 VDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYP 434
                  +L+  I ++R    ++ G   P V+I    +    +  +L+    + S    P
Sbjct: 360 --TLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSI-P 415

Query: 435 GRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNH 494
            +   +  G  A  +    T+    G    W+   +  +AQ  G  V   S  ++  L  
Sbjct: 416 AQADYLLIGADASVVGDSQTLPNGMGQ-ICWLTKDMAHKAQGFGLDVFAGSQRISALLKC 474

Query: 495 LISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           ++ +H  E  G QE + L++ + +   +L ++L    + +  + + LQ L+ E+V IRD+
Sbjct: 475 VLLRHMGEFIGVQETRYLMNAMEKNYSELVKEL-QRQLPINKIAETLQRLVSERVSIRDL 533

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQAL 614
           R I  TL + AP + D   LT  VR+AL R I ++  P    + ++ +   +E L+ +++
Sbjct: 534 RLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESI 593

Query: 615 QGGG-GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673
           +    G    L+ R   Q  + + +     A   ++ +   R  L +    +L  + +LS
Sbjct: 594 RQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILS 653

Query: 674 NLELSDNRHIRMTATI 689
             EL +   I++  +I
Sbjct: 654 WQELGEESLIQVVESI 669


>UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria
           RepID=Q0C5I9_HYPNA
          Length = 692

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 240/680 (35%), Positives = 377/680 (55%), Gaps = 17/680 (2%)

Query: 23  AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82
              I ++ I+ +MVLP+PA++LD+  T + ALSI++    +F ++ L+F++FP+ILL + 
Sbjct: 15  LLAIGLMAIILVMVLPMPAWVLDVGLTLSFALSILIFTTVIFVEKPLDFSSFPSILLASL 74

Query: 83  LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142
           +LRLALNV+ST++I+ EGHTG  AAG V+E F  F++GGN  +G+VVF +LVI+NFMVIT
Sbjct: 75  VLRLALNVSSTKLIIGEGHTGTDAAGGVIEGFAMFIMGGNLFVGLVVFGVLVIVNFMVIT 134

Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202
           KGAGR+AEVGARF LD MPGKQ+AID+DL  G I  +EAK RR    +EA F GS+DGAS
Sbjct: 135 KGAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFLGSLDGAS 194

Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262
           KFV+GDAIAG+LI  +N++ G+  GV+ H +S+  A  +Y++LT+GDGLV+QIPA+++S 
Sbjct: 195 KFVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQIPAVIVSV 254

Query: 263 AAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLG 322
           AA +++++   +  +   +  QL  N + + + A +L +  L+PG+P L F+   AG   
Sbjct: 255 AAALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIAGAAGFAA 314

Query: 323 LAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGE 382
           +A++ +    +  A  +           +    D    D + +EV   L+ MV   ++G 
Sbjct: 315 VAYFTKKAADEKAASEETKPEDAAPKAPK--IGDSIYADEIHLEVAPDLVNMVLVGENG- 371

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
              RI  IR+  A+E GF+ P + + DN  L+   YR+ ++GV + SG   PG+ LA+  
Sbjct: 372 FESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGILRPGQVLALIE 431

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
                 L GE   +P +   A W+ SA K++       VVE   V+ATH+  +I  + + 
Sbjct: 432 ENQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATHMLEVIQSNFSL 491

Query: 503 LFGRQEAQQLLDRV--------AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDM 554
           +F R    + LD +        A    +  ++ +PG VT   L  VL+ LL E+VPIR++
Sbjct: 492 VFTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLRMLLTERVPIRNL 551

Query: 555 RTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL--- 611
             I+ET+AE  P       +  +VR  L   I  +    +  + +I L T  E+      
Sbjct: 552 FLIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQLSTSWEQKFTEYE 611

Query: 612 ---QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQ 668
              ++      L P +   L+   Q  L+     G    +  +   R  L   L     +
Sbjct: 612 VTNESGGSDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSSRRRRFLQTVLASKGIR 671

Query: 669 LVVLSNLELSDNRHIRMTAT 688
             V++  E++      +   
Sbjct: 672 NAVVAYEEINSKSKPYIIGV 691


>UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1
           RepID=Q11M51_MESSB
          Length = 691

 Score =  618 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 200/690 (28%), Positives = 348/690 (50%), Gaps = 17/690 (2%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           +       + + +   ++  L+L M++LPLP   +DL+ T N++ SI++LL+++     +
Sbjct: 4   IKPLAAIARQKDVFLVLVFALVLLMVILPLPPAAMDLMITLNVSASIIILLMSLQMHNPV 63

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           +F+ FP +LL TTL RL++++++TR+IL+EG      AG++VE FG   +GGN A+G+V 
Sbjct: 64  QFSTFPALLLVTTLFRLSISISTTRLILLEG-----DAGRIVETFGQVAMGGNLAVGLVT 118

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F+I+ ++ F+VITKGA R+AEVGARF LDGMPGKQM+IDAD+ AG + + +A+  R  + 
Sbjct: 119 FLIITVVQFLVITKGADRVAEVGARFTLDGMPGKQMSIDADVRAGNMDQLDARHARQNLE 178

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +EA  +G+MDGA KFV+GDAIAG++I VIN+VGG+ +G+ Q G+  G A   Y LLT+GD
Sbjct: 179 REAKLFGAMDGAMKFVKGDAIAGLVITVINLVGGVAIGMAQRGVGFGEALSLYALLTVGD 238

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GLVAQIPAL+IS AAG +VTRV+     D+G ++  Q  +N   ++++  ++ L GLVPG
Sbjct: 239 GLVAQIPALLISVAAGNMVTRVTNPNGMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPG 298

Query: 308 MPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEV 367
            P  +F+   + + G   W   R+ +     +       + +++    ++ +       V
Sbjct: 299 FPTWIFVSVGSAMTGGVIWTIRRQHRDVLSAQTDWSLRLD-LLQRQCAEIAMRTGAKEAV 357

Query: 368 GYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427
              L   +             ++R   AQE G       + +  +  P  Y+I +     
Sbjct: 358 RLILPKEIYKLDVTAFFSAFEAVRISIAQEYGIPT-GYWLFEVDEGSPHSYQIYVNQELA 416

Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTV 487
             G             +    L G   +          + +  +++   +          
Sbjct: 417 DCGIFRADSLFVKAHTSYLDAL-GIPWLSGFGRREGALVPTDQEQRLAEENIVYWRPMEQ 475

Query: 488 VATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDE 547
           +  HL  +  +    +   Q    +L+ V    P L  DL     +   +  V++NLL E
Sbjct: 476 LLMHLKRVAVERLDVMASLQNITAILNEVQTNNPALVGDL-REAASNNQIAGVIRNLLRE 534

Query: 548 KVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE 607
           ++P+     ILE + + +  + DP  L   VR+ +   IT+++      + V+ +   +E
Sbjct: 535 RIPVTSRVRILEGILKWSQKRPDPGYLAQKVRIEIADFITKRFA-ADGFLPVVVVSPTVE 593

Query: 608 RLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL 662
            L+ + ++         LEP ++  +  Q ++    +   G  PVL++   +R  +   L
Sbjct: 594 SLMREGMRNTEEGNFLILEPSISAYIAKQAKQICGEEFRRGHDPVLIMQQDVRLAMHNIL 653

Query: 663 RRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
                 L VL+  E++    I     +  +
Sbjct: 654 YEHGIHLPVLAYQEITPETVIYPVGFLLAE 683


>UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6
          Length = 691

 Score =  618 bits (1594), Expect = e-175,   Method: Composition-based stats.
 Identities = 222/684 (32%), Positives = 377/684 (55%), Gaps = 23/684 (3%)

Query: 23  AGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTT 82
              ++ +  +  +++PLP F+LDL+    +A S++V + A   +   E  +FP++LL   
Sbjct: 11  FAILIAVSFVIALIVPLPPFVLDLVLVTILAFSVLVYMRATSIKDWNELKSFPSLLLLMG 70

Query: 83  LLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVIT 142
           + R+++N+++TR IL  G       G+V++ FG+F++G NF +GIV+F+IL++  F+V  
Sbjct: 71  IFRVSINISTTRAILTTGDP-----GQVIKQFGNFVIGSNFVVGIVIFIILIVFQFIV-A 124

Query: 143 KGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGAS 202
            G+ R AEV ARF LD +PGKQMAIDADLN  LI E EAK++R+ +  E +FYG+MDGA 
Sbjct: 125 NGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMDGAG 184

Query: 203 KFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIST 262
           KFV+GD +  +L+ V+NIV GL+VG++Q G+S G AA  YT LTIGDG+V+QI +L+++ 
Sbjct: 185 KFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLLMAM 244

Query: 263 AAGVIVTRV--STDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGL 320
           +AGVIVTRV   +D +V   +  +L  N  V+   +A+  L+G+   +P + F+     L
Sbjct: 245 SAGVIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIGVVL 304

Query: 321 LGLAWWIR---GREQKAPAEPKPVKMAENNTVVEATWN----DVQLEDSLGMEVGYRLIP 373
             + +  +    ++++   E +   +       EA  N      + +  + +E+G  +  
Sbjct: 305 GIIGYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVELGLNIAA 364

Query: 374 MVDFQQDGEL-LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQP-ARYRILMKGVEIGSGD 431
           +V  + +GE    ++  +RK   Q++G   P ++ +DN   QP  +Y I +KGV + SG 
Sbjct: 365 LVKQKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVAVASGV 424

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
              G  LA+        L  E T DP FG +  WI     E AQ++ Y V+E  +++ TH
Sbjct: 425 LKAGHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLSILITH 484

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
           L+ ++ ++  EL  RQ+ + L+D +A E   L +++    +  + +  VL+ LL E + +
Sbjct: 485 LDVVLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISV 544

Query: 552 RDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLE--R 608
           RD+ TI+E + +   I  +D   +TA VR  + + I +Q      +++ + L   +E   
Sbjct: 545 RDLPTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDT 604

Query: 609 LLLQALQGGGGLEPGLADRL--LAQTQEALSRQEMLGAPPVLLVNH-ALRPLLSRFLRRS 665
            ++     G  L   L   L  + + ++ +++ ++ G  PV+L      R    R L R 
Sbjct: 605 EIVNTPYYGYALNWALDKELPIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERY 664

Query: 666 LPQLVVLSNLELSDNRHIRMTATI 689
              + VLS  ELS    +   A I
Sbjct: 665 QLDVPVLSISELSPETEVEQIALI 688


>UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI
          Length = 579

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 228/573 (39%), Positives = 347/573 (60%), Gaps = 16/573 (2%)

Query: 131 VILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQ 190
           + L+ INF+V+TKGA RI+EV ARF LD MPGKQMAIDADLNAGLI + +A+ RR +V  
Sbjct: 8   LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67

Query: 191 EADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDG 250
           EADFYG+MDGASKFVRGDAIAG++I+ IN++GG+ +G+ ++ +S   A + Y L+TIGDG
Sbjct: 68  EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127

Query: 251 LVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPN 310
           LVAQIP+L++STAA +IVTRVS + D+   + NQL ++PSV+  +  ++ +L +VPGMP+
Sbjct: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187

Query: 311 LVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA----ENNTVVEATWNDVQLEDSLGME 366
           L FLLF+A L    W +  +   A AE K ++         +  + +W  + L + + + 
Sbjct: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247

Query: 367 VGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVE 426
           +GY+L+ +VD  Q   L  RIR +R+  +   G L P + IR+N  L+P++Y I + G++
Sbjct: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307

Query: 427 IGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEAST 486
               D    + +A+      G + G    DPA+G+   WI++A K +A   GY V+++++
Sbjct: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367

Query: 487 VVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLD 546
           V+ATH+N ++  +  +LF   +  QL +R++   P+L EDL    +  + L KV + LL 
Sbjct: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLT 426

Query: 547 EKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPL 606
           E V +RD+ TI   L   + +  D   L A VR+AL R+IT  +   K E+ V  L+  L
Sbjct: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485

Query: 607 ERLLL----QALQGGGGL------EPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
           E LL     QA QGG  +      +P + ++  +   +   + +  G  PVLLV   LRP
Sbjct: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           LL+R+ R   P L VLS  E+ D   +++   +
Sbjct: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578


>UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter
           proteolyticus DSM 5265 RepID=B5Y7F7_COPPD
          Length = 671

 Score =  597 bits (1539), Expect = e-169,   Method: Composition-based stats.
 Identities = 227/679 (33%), Positives = 389/679 (57%), Gaps = 16/679 (2%)

Query: 20  QILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILL 79
             L   + +++ + M+++P+P+ +LD+LF FN+  S++VL+++++T+   EF++FP+++L
Sbjct: 2   SGLYTTLFVIVGIFMLMVPVPSMVLDVLFAFNLVFSLLVLMISLYTRSATEFSSFPSLML 61

Query: 80  FTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG-GNFAIGIVVFVILVIINF 138
           F     L L V+S R IL+ G+ GA A      AFG  ++G GN+ +G+V+FV+L+I+ +
Sbjct: 62  FAVFFHLVLIVSSARAILVTGNPGALA-----TAFGKLIMGQGNWVVGLVIFVVLLIVQY 116

Query: 139 MVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSM 198
           MVIT G  RI+EV ARF LD MPG+QMAIDADL+AG I  +EA+++R  + +E+DF+G+M
Sbjct: 117 MVITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLRKESDFFGAM 176

Query: 199 DGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPAL 258
           DGAS+FVRG+ +A  L  V+N +GG++VG+L  G +   A   Y  + IG  L   I +L
Sbjct: 177 DGASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGVALQIAISSL 235

Query: 259 VISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTA 318
            +S +A ++V RVS++Q +GE++ ++L + P ++ +   VL +  L+PG+P L+ +    
Sbjct: 236 ALSLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVPKLLLIPLGV 295

Query: 319 GLLGLAWWIRGREQKA-PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDF 377
            L+      +   + A P + +  ++ E  +  EA    V   D++ +E GY L+P+ D 
Sbjct: 296 LLIWFGRTPKPAAETALPEQVEAKRLYEQLSEPEAMLGFVG-VDAVELEFGYELLPLFDT 354

Query: 378 QQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRW 437
               ++L  I  +RK  ++E GF  P + I DN+ L+P +YRI ++GV  G G    G  
Sbjct: 355 TSGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGVTAGEGILEMGLL 414

Query: 438 LAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
           LA+  G+    + G  T +P F L+A WI  + K +A+  G TVV+  T+V THL  ++ 
Sbjct: 415 LAMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCGTIVITHLGEVLK 474

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
              A+L  RQ  + ++D V +  P + E+L   V +L  +  V + LL E++P+RD+  +
Sbjct: 475 SSLADLITRQNIKDIVDYVGRSHPAVVEEL-QQVASLGDVEFVFRYLLQERLPVRDVVRV 533

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
            E + +      D  E   + R A    + +     +  + VI L   +ER L+++ Q G
Sbjct: 534 FELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDMERALIESYQPG 593

Query: 618 G----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFL-RRSLPQLVVL 672
                 L      +++ + ++A           VL+V+  +R  L   L R+ L +L VL
Sbjct: 594 SEIGFALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRRALWELLSRQGLKELTVL 653

Query: 673 SNLELSDNRHIRMTATIGG 691
           S  E+ D +++ +  ++G 
Sbjct: 654 SYNEIMDAKYV-VVGSVGA 671


>UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae
           RepID=Q1D0P1_MYXXD
          Length = 688

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 224/691 (32%), Positives = 362/691 (52%), Gaps = 23/691 (3%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           +   LK+     +   + +  +L  +++PLPA++LD     N+A S+ +L+ A+  +  L
Sbjct: 5   MKVLLKARNSSDVVLAVAMAAVLGALIIPLPAWLLDAGLAVNLAASVALLVAALRARDAL 64

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           +  +FPT+LLFTTL RLALNV+STR+ L EGH     AG V++AFG F+V G++ +G VV
Sbjct: 65  KVTSFPTLLLFTTLFRLALNVSSTRLALAEGH-----AGDVIQAFGEFVVRGDYVVGAVV 119

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F IL ++  +V+TKGA R+AEV ARF LD MPGKQM+IDADL AG I + +A++RR ++ 
Sbjct: 120 FAILTLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLE 179

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +E+  +G+MDGA KFV+GD IAG++I+ +N++GG ++GVLQ GM +  AA ++ L+ IGD
Sbjct: 180 RESQMFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGD 239

Query: 250 GLVAQIPALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVP 306
           GLV+Q+P+L I+ AAG++VTRV++   +  +G ++  Q F     + + A +   L L+P
Sbjct: 240 GLVSQVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMP 299

Query: 307 GMPNLVFLLFTAGLLGLAWWIRG----REQKAPAEPKPVKMAENNTVVEATWNDVQLEDS 362
           GMP++ FLL   GL GL   +      + ++    P              +         
Sbjct: 300 GMPHVTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGAPPESAASPVGVSP 359

Query: 363 LGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMD-LQPARYRIL 421
           L +++   L  + + +    +   +  +R +   E+G   P + +R     L P  YR+L
Sbjct: 360 LTLDMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRVL 419

Query: 422 MKGVEIGSGDAYPGRWLAINPGTAAG--TLPGEATVDPAFGLNAIWIESALKEQAQIQGY 479
           +  V  G G   PG   A+ P        +  EA  +P+ G     I  + +   +    
Sbjct: 420 VDEVPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQV 479

Query: 480 TVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHK 539
            +     +V+ H+  ++   AA+L G Q+ Q LL+ +  + P L ++ +   V L  L  
Sbjct: 480 PLRRPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQK-VPLPLLTD 538

Query: 540 VLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHV 599
           VL+ LL E V IRD+R ILE L      + D   L    R AL R ++ ++ P    ++ 
Sbjct: 539 VLRKLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLSHKFAP-TGPLYA 596

Query: 600 IGLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLS 659
             +D  +E +L      G   +P     +L   ++  +         VLL    +R  L 
Sbjct: 597 YLVDPEVEEVLRGMGPRGLAPDPERVAEILEGVRQVATE-----GRAVLLTAPDVRRPLR 651

Query: 660 RFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R    + P + VL+  EL     IR    + 
Sbjct: 652 RLCEGAFPDVAVLTYGELDGALQIRPIGRLS 682


>UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1
           Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK
          Length = 644

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 203/692 (29%), Positives = 341/692 (49%), Gaps = 66/692 (9%)

Query: 10  LPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTL 69
           LP      +   +       +I+ MMVLP+P  ++D +  FN+A + +VL+  ++ +  L
Sbjct: 5   LPPVAAIAKRTDILFAGFFAVIVVMMVLPMPTVLIDAMIAFNLAFAFVVLVTTIYLRNVL 64

Query: 70  EFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVV 129
           + + FP ++L  TL RLAL +++TR++L EG      AG+++ AFG F+V GN  +G+++
Sbjct: 65  DISTFPAVILIGTLFRLALTISTTRLVLAEG-----DAGEIISAFGSFVVAGNVVVGLIM 119

Query: 130 FVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVT 189
           F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL +G I  + A+KRRS++ 
Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179

Query: 190 QEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGD 249
           +E+ F+G+MDGA +FV+GDAIAG++I+ +N++GGL +G+ Q G+S   AA+ Y+LL+IGD
Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239

Query: 250 GLVAQIPALVISTAAGVIVTRVSTDQ--DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPG 307
           GLV+QIP+++++ AAG +VTRVS D+  ++G ++  QL   P  + ++AA+    GL+PG
Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299

Query: 308 MPNLVFLLFTAGLLGLAWWI--RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365
            P  V      GL  LA  +  + R Q    +       + N    A  +  +  D +  
Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTATAALDRAKYGDPIVA 359

Query: 366 EVGYRLIPMVDFQQ-DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKG 424
            +    +  ++     G L  RI    +  A+ +G    V     +  +      I ++ 
Sbjct: 360 TLSAATMSRLEANNLGGHLDARI----RVAARAVGVAITVPTFNADPRMGEDMIHIQVEN 415

Query: 425 VEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEA 484
           V  G                                                        
Sbjct: 416 VPAGLISCKAD-----------------------------------------------RP 428

Query: 485 STVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNL 544
           + ++A  +  ++ +H   +F   +A Q L  +   + KL  D V   V+   L  V++ L
Sbjct: 429 AELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAID-VRTQVSPMLLVAVIRRL 487

Query: 545 LDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDT 604
           LD  V +   R +LET+ +  P + DP +L    R AL R I       +  + V+    
Sbjct: 488 LDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFSP 547

Query: 605 PLERLLLQALQGGGGLE----PGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
             ER +          E         RL  +T++AL      G  PV+++   LR L   
Sbjct: 548 EWERFVRSYSDASDKTEKEEISEKLRRLANETKDALVDANERGFDPVVVMPGELRFLTQA 607

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
            + R   ++ V++  E+  +    +   +G +
Sbjct: 608 LMIRHNCRVPVVAIEEIDHDITSDVVGMVGVQ 639


>UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU
          Length = 645

 Score =  582 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 209/672 (31%), Positives = 345/672 (51%), Gaps = 72/672 (10%)

Query: 33  SMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVAS 92
            +M+LPLP  ++D L   NI LS+++L+V M+   ++  ++FP++LLFTTLLRL+LN+AS
Sbjct: 29  GLMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIAS 88

Query: 93  TRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVG 152
           T+ IL+      A AG ++E+FG  +VGGN  +G+VVF+I+  + F+VI KG+ R+AEVG
Sbjct: 89  TKSILLH-----AEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVG 143

Query: 153 ARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAG 212
           ARF LD MPGKQM+IDADL  G +  DEA+++R+ +  E+  +G MDGA KFV+GDAIAG
Sbjct: 144 ARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLAMESQLHGGMDGAMKFVKGDAIAG 203

Query: 213 ILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVS 272
           ++I ++NI+ G++VGV  HGM+ G AA  + +L++GD +V+QI +L+IS AAGV++TRV+
Sbjct: 204 LVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGVMITRVA 263

Query: 273 TDQ-----DVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWI 327
            +       +G  +  QL SN   ++ ++ +L     VPG P ++FLL  A +    + I
Sbjct: 264 NENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYTI 323

Query: 328 RGREQK--APAEPKPVKMAENNTVVEATWNDVQLED---SLGMEVGYRLIPMVDFQQDGE 382
             +++      + K    +      EA        D    L M +  +L  ++D  +   
Sbjct: 324 WRKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDFASPLSMRLSPQLAALLDPAR--- 380

Query: 383 LLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINP 442
           L   I S R++  + +G   P + I     LQ  +Y +L+  V     +           
Sbjct: 381 LDQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYEVLIHDVPETRAELE--------- 431

Query: 443 GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAE 502
                                                   +    +A      +   A  
Sbjct: 432 -------------------------------------NTDDMQAALARQAISPLHARAHL 454

Query: 503 LFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLA 562
             G QE Q +L++VA + P L  + V   +    +  VL+ LL+E++P+R++++ILE+L 
Sbjct: 455 FVGIQETQWMLEQVAVDYPGLVAE-VNKAMPAQRIADVLRRLLEERIPVRNIKSILESLV 513

Query: 563 EHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG---- 618
              P + D   LT  VR  LGR +      G  ++  + LD  +E+L+ Q+++       
Sbjct: 514 VWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGNF 573

Query: 619 -GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLEL 677
             L P  A++L+ Q +  +        P  ++ +  +R  + R +   L  L V S  EL
Sbjct: 574 LALPPEQANQLVEQVERIVGDHAQ--HPLAVVASMDVRRYVRRMIEARLTWLQVYSFQEL 631

Query: 678 SDNRHIRMTATI 689
                ++    +
Sbjct: 632 GSEVQLQPIGRV 643


>UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae
           RepID=Q0B7U0_BURCM
          Length = 749

 Score =  578 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 232/702 (33%), Positives = 365/702 (51%), Gaps = 39/702 (5%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
            L ++    L     I+ ++++ +LPLP   LD + + N+A S+++L V+ +    + F+
Sbjct: 40  RLGASPRADLFLAGFIVSVVALFILPLPQAALDGMISLNLAASVVLLTVSTYVPSAVSFS 99

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
           +FP +LLFTTL RLALN+AS ++IL+  +     AG V++AFG  +VG N  +G VVF++
Sbjct: 100 SFPALLLFTTLFRLALNIASCKLILLHAN-----AGHVIDAFGRLVVGNNVVVGGVVFLV 154

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           + ++ F+VI KG+ R+AEVGARF LD MPGKQM+IDADL AG+I  DEA++RR  + QE+
Sbjct: 155 IAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLEQES 214

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
             +G+MDGA KFV+GDAIAG++I  INIV G+ VG L HGM +G A + Y +LT+GDG+ 
Sbjct: 215 QMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGDGMA 274

Query: 253 AQIPALVISTAAGVIVTRVSTDQD----VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308
           +QIP+L++S AAG++ TRV+T       +GEQ+  QL ++P  +L++A VL    +VPG 
Sbjct: 275 SQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVVPGF 334

Query: 309 PNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVG 368
           P   F L   GL   A     R+  AP+              +     V     +   + 
Sbjct: 335 PKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTSLIA 394

Query: 369 YRLIPMVDFQQD-GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEI 427
             L   +    +  +L   + S + +   ++G + P + + D+       YRI ++ V  
Sbjct: 395 VSLSDDLRTTLNLAQLQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIYLQDVLA 454

Query: 428 GSGDAYPGRWLAINPGTAAGTLPGEATVDP--AFG--LNAIWIESALKEQAQIQGYTVVE 483
             G   PG  L          LP  A   P  AFG    A+WI+              + 
Sbjct: 455 AHGALKPGWLLW----DGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKWLT 506

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
           +   +A H+  ++ QHA EL G QE Q L+  V +E P+L  +L   +V L  + +VL+ 
Sbjct: 507 SEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELT-RLVPLQRVTEVLRR 565

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQ-SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGL 602
           LL E+VPIR++R I E+L   AP +  D   L  +VRV L R IT +      ++ V+  
Sbjct: 566 LLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVLF 625

Query: 603 DTPLERLLLQALQGGG-----GLEPGLADRLLAQTQEALSRQE----------MLGAPPV 647
           +  L+  +  A+          L   +   +  Q +  +   +                 
Sbjct: 626 EQNLQERIESAVMRTKQGNFLALSSAIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPRLA 685

Query: 648 LLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
           ++V    R  +   L+  LP+L VLS  E+ ++  +     +
Sbjct: 686 VMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWV 727


>UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B2TCZ3_BURPP
          Length = 691

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 229/685 (33%), Positives = 363/685 (52%), Gaps = 21/685 (3%)

Query: 16  STQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFP 75
             +   LA    +L +L +++LP+P+F+LDL    +   S ++L   ++  + +E ++FP
Sbjct: 16  IARHADLAVGAGMLSVLVLLILPVPSFVLDLFICVSFTASFVMLAATIYAAKPVELSSFP 75

Query: 76  TILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVI 135
           ++LL TTLLRLAL +AST++IL+  H     AG+++ AFG  +VGGN A+G+VVF++L  
Sbjct: 76  SLLLVTTLLRLALAIASTKMILLYAH-----AGQIIGAFGEIVVGGNVAVGMVVFIVLSA 130

Query: 136 INFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFY 195
           I F+V+ KGA R+AEV ARF LDG+PG+QM+IDADL  GLIG  EA + R E+ +E  FY
Sbjct: 131 IQFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELERETYFY 190

Query: 196 GSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQI 255
           GS+DGA KFV+GDAIAG+++ ++NI GGL VG+ Q GMS+  A  +YT+LT+GDGLV+QI
Sbjct: 191 GSLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGDGLVSQI 250

Query: 256 PALVISTAAGVIVTRVST---DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           P+L++S +AG++VTRVS+     ++G  +  QL ++P  M+++      L  +PG P++ 
Sbjct: 251 PSLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIPGFPHIQ 310

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMA---ENNTVVEATWNDVQLEDSLGMEVGY 369
           F+L    L+GLA  +  +   A    +P   A   +    V+   +DV+L  S  + V  
Sbjct: 311 FVLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSSPLRVRL 370

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
                 +     EL  ++  +R+     +G   P + +  +  L   RY + +  V    
Sbjct: 371 G-SAACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVDIDDVPFSG 429

Query: 430 GDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVA 489
           G    G  L  +  T   T+ G     P     ++W+ +               A+ ++ 
Sbjct: 430 GTLLAGHVLV-SGDTERVTMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMKSSANGLLC 487

Query: 490 THLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKV 549
            HL  +  + A    G QE + LL+ V  E  +L   +   VVT   +  VL++LL+++V
Sbjct: 488 DHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVT-VAQKVVTTAQIAAVLRSLLEQRV 546

Query: 550 PIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE-VHVIGLDTPLER 608
            IR+MR ILE + +    +     +    R+AL   + + +       VH   L+   E 
Sbjct: 547 SIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAVLEPSWEA 606

Query: 609 LLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPV--LLVNHALRPLLSRFLRRSL 666
            L   +  G   EP     L A   E+L R        V  ++    LRP L R LR   
Sbjct: 607 ELEAQIDLGPDGEPRCV--LDADRLESLQRGFAARNDVVRLVVTTAVLRPHLERVLRTLG 664

Query: 667 PQLVVLSNLELS-DNRHIRMTATIG 690
            +  VL+  E+  D   +R+ AT+ 
Sbjct: 665 MRTDVLAMEEIPLDEYRVRVIATLA 689


>UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp.
           SKA58 RepID=Q1NCU5_9SPHN
          Length = 654

 Score =  560 bits (1445), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/697 (29%), Positives = 341/697 (48%), Gaps = 71/697 (10%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +AA L       + +   L   + ++ I+++++LPLPA ++D+L   NIA+ +++LL  +
Sbjct: 1   MAASLISRLPRGAVRPADLMLIVAVVAIVALLILPLPAIMIDMLVATNIAIGLLLLLSTL 60

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNF 123
              + L+F+ FPT+LL +TL RL+L++A+TR+IL       A  G +++ FG  + GGN 
Sbjct: 61  HITKPLDFSTFPTVLLLSTLFRLSLSIATTRMILT-----TAEGGHIIQQFGEMVAGGNL 115

Query: 124 AIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKK 183
            +G+VVF+I+ ++ F+VI+KGA R+AEV ARF LD MPGKQ++ID+DL +GLIG+DEA++
Sbjct: 116 IVGLVVFLIVTVVQFIVISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARE 175

Query: 184 RRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYT 243
           RR  +  E+  +GS+DGA KFV+GDAIA I+I++IN+VGGL VGV  HGM  G A + ++
Sbjct: 176 RRRTLELESKLHGSLDGAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFS 235

Query: 244 LLTIGDGLVAQIPALVISTAAGVIVTRV---STDQDVGEQMVNQLFSNPSVMLLSAAVLG 300
           +LTIGDGLVAQIPAL  + AAG++VTR    S D  +G  +V Q+ S P V+  +A +  
Sbjct: 236 ILTIGDGLVAQIPALFSAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCL 295

Query: 301 LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQK---APAEPKPVKMAENNTVVEATWNDV 357
           L+ L+PG P  VF+     L   A W            A             + A     
Sbjct: 296 LMALIPGFPAAVFIGIAFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAP 355

Query: 358 QLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPAR 417
           +    L +E+    +     ++   L  R   + +     +G   P   +   +      
Sbjct: 356 RPVRPLVLEIAAPALDAAQAER---LRARFVLVIEAVQARLGLPMPAGEVTTRL------ 406

Query: 418 YRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQ 477
                    +  G+       A      +G + G                          
Sbjct: 407 ---------LPEGERPRWTLSAYEAPVGSGEVDGP------------------------- 432

Query: 478 GYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTL 537
                     +A  +  L+ ++AA   G QE   +L+R+  + P L +++V   V+   +
Sbjct: 433 ------FEEAIAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVV-RAVSSPRI 485

Query: 538 HKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEV 597
            +VL+ L +E+V +R++R +LE +AE    + +   +    RVAL R I           
Sbjct: 486 AEVLRLLAEEEVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHM-ADGRF 544

Query: 598 HVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
            V+ +   LER     LQ   G     + P  A  L+   +   ++         ++  +
Sbjct: 545 PVLVVGGRLERFFRDNLQTVEGVAHLAMPPDQARTLIGMIRSETAKCGAR----AIITAY 600

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
            LR  L +     L  L +L   EL+    + +  T+
Sbjct: 601 DLRRPLRQLTAGDLFGLPILCYNELTPALPLDVVGTL 637


>UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli
           RepID=B3Q2A2_RHIE6
          Length = 643

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 206/690 (29%), Positives = 337/690 (48%), Gaps = 67/690 (9%)

Query: 7   MLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQ 66
            +R  A     Q   +   +    +++M+VLPLP  +LD+L  FN++ + +VL+   + +
Sbjct: 2   KVRSSAIAMLAQRTDMLLAVFFASVVTMLVLPLPTIVLDVLIAFNLSFAFVVLITTTYLK 61

Query: 67  RTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIG 126
             LE + FP ++L  TL RLAL ++STR++L +     A AG+++ AFG F+V GN  +G
Sbjct: 62  SVLEISTFPAVILIGTLFRLALTISSTRLVLAD-----ADAGEIIMAFGDFVVAGNVVVG 116

Query: 127 IVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRS 186
           +++F+I+ ++ F+V+TKGA RIAEVGARF LD MPGKQ+AID+DL  G I  + A+KRRS
Sbjct: 117 LIIFLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRS 176

Query: 187 EVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLT 246
            + QE+ F+G+MDGA +FV+GDA+AG++I+ +N++GGL +G+ Q G+S   AA  YTLL+
Sbjct: 177 RLEQESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLS 236

Query: 247 IGDGLVAQIPALVISTAAGVIVTRVSTDQD--VGEQMVNQLFSNPSVMLLSAAVLGLLGL 304
           IGDGLV+QIP+++++ +AG++VTRVS D +  +G  +  +LF  P  + ++AA+    G 
Sbjct: 237 IGDGLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGF 296

Query: 305 VPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLG 364
           VPG P  V       L GLA+ +  R     A      +   N+      +  +  D + 
Sbjct: 297 VPGFPTGVLGAIGLCLAGLAFMVHRRRAGPAAAGSANAVESANSY---PLDRTKYGDPVI 353

Query: 365 MEVGYRLIPMVDFQQDGELLG-RIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
             V    +  ++  + GE+L  RIR      A+ +G    V     +  +      + ++
Sbjct: 354 ATVAVETLARLEAMRLGEMLDGRIRMA----ARAVGVSVTVPTFNADPRMAEDLIHLQVE 409

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
            V  G     P R                                               
Sbjct: 410 NVPAGLVSCGPERT---------------------------------------------- 423

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
            +  +A  +  ++ +H   LF   +A Q L  +   + KL  D V   V L     V++ 
Sbjct: 424 -AEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAID-VATQVPLMLTVAVVRR 481

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LLD  V +   R +LE +  HA     P  L  + R AL + I       +  +  + L 
Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540

Query: 604 TPLERLLLQALQGGGGLEPGLADR---LLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR 660
              +  +      G   +  +A+R   L  + ++AL      G  P+++V    R L   
Sbjct: 541 AEWDHFIRSYDAAGATEKIEIAERLRLLAEKARQALEDANERGYDPIIIVPGEWRLLTQT 600

Query: 661 FLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +     ++ VL+  E+  +  I     IG
Sbjct: 601 LMIHHNCRIPVLAAEEIDRDITIETIGEIG 630


>UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia
           RepID=B1T6S7_9BURK
          Length = 679

 Score =  497 bits (1279), Expect = e-139,   Method: Composition-based stats.
 Identities = 216/688 (31%), Positives = 338/688 (49%), Gaps = 42/688 (6%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
              +       I +L +L +++ PLP   LD++   N+ +S+++L ++++    L  + F
Sbjct: 13  AFGRHVDSIPIIAVLGVLCLIIFPLPIPALDVVLALNLTISVLILALSVYIPHALHLSTF 72

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           PT+LL  TL RL LN+A+TR IL+ G+     AG ++  FG  +VGG+  +G VVF+I+ 
Sbjct: 73  PTLLLVATLFRLGLNIATTRQILLNGY-----AGDIITTFGKLVVGGDVVVGFVVFIIIA 127

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           II F+V+ KGA R+AEVGARF LD +PGKQMAIDADL AG+I + +A +RR ++ Q + F
Sbjct: 128 IIQFVVVAKGADRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQF 187

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGASKFV+GDAIAG+LI ++N+VGG+++G   +G  +   A  YT+LT+GDGLV+Q
Sbjct: 188 YGAMDGASKFVKGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQ 247

Query: 255 IPALVISTAAGVIVTRVS---TDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNL 311
           IP+L+IS AAG+++TRV+   +   VG  + +Q+ S P  +  +A V     LVPG P L
Sbjct: 248 IPSLLISFAAGILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTL 307

Query: 312 VFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL--GMEVGY 369
            FL     L  LA  I     +     +   +A  +           +E  L   + +  
Sbjct: 308 AFLGLGVLLALLAALI----PRLSVMGRSTALARQHWARREGVATTVVEGDLGSSVPLRV 363

Query: 370 RLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGS 429
           RL P +  Q     L R+    ++  +E G   P + +  +  L    Y + +  V I  
Sbjct: 364 RLAPELFDQLKPLELDRLLLALRERFRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIAD 423

Query: 430 GDAYPGRWLAINP-GTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
           G     +       G +  +LPG A  +                       + +E   ++
Sbjct: 424 GQLERTQGEGERKRGLSLPSLPGRAGAETG---------------------SQMEIEAML 462

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
              +   I        G QEA  L D +++  P+L  +++   + L     VL  LL   
Sbjct: 463 VGRIGDAICAKPWRFLGIQEASYLQDALSRHYPQLV-NILAERIHLFVFRDVLVELLRTG 521

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
           V IR++R I E L + +   +D   L +  R AL   I+ QW   +  + +  L   LE 
Sbjct: 522 VGIRNLRAIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEA 581

Query: 609 LLLQALQGGGGLEPGLAD-----RLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 663
           +L Q L   G ++            + Q    +          VL+    LR  +   LR
Sbjct: 582 VLRQRLIASGQIKFIDLQVDEQHAFVQQVIADMQTTWRDHPGAVLVTGQDLRRSVEALLR 641

Query: 664 RSLPQLVVLSNLELSDNRHIRMTATIGG 691
                + VL+  E+SD    R+  TI  
Sbjct: 642 GGERGVTVLAVEEISDEVTYRVLHTISV 669


>UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH
          Length = 628

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/688 (26%), Positives = 333/688 (48%), Gaps = 73/688 (10%)

Query: 15  KSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEF 71
           K     +L  P  ++   L+ +++++ LP  ++D     +   S ++L++ +   + L+ 
Sbjct: 4   KLRNSTLLFNPSSVMIAFLLPTIILVTLPGVVIDFFLLISFVSSALLLIIMLENDQPLKV 63

Query: 72  AAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFV 131
              PT++L  T  RL L++A+TR I+          G+V+E  G F++GGN   G+++FV
Sbjct: 64  TFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGRVIETIGEFVMGGNLISGLLIFV 118

Query: 132 ILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQE 191
           I+ I+ F+V+TKG  R+AEVGARF LD +PGKQM ID DL +GLI  ++A+K R+++  E
Sbjct: 119 IITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTE 178

Query: 192 ADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGL 251
              +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q  +S+  + + +++LTIGDGL
Sbjct: 179 NKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGL 238

Query: 252 VAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM--P 309
           V+QIP+L++S A GV +TR+   +D     ++Q+ +       S  V+G++ ++ G+  P
Sbjct: 239 VSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNP 298

Query: 310 NLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGY 369
            L+++     +L +   +   ++            E + V E             ++  +
Sbjct: 299 TLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVEPEGSGVFE------------SLKFVF 346

Query: 370 RLIPMVDFQQDGELLGRIRSIR-KKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIG 428
           R     D Q    +  R++ +  + + Q +G   P V ++ ++D+  A Y   + GV   
Sbjct: 347 R-----DAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVDIAVY---ISGV--- 393

Query: 429 SGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVV 488
                  +    +  ++ G +      D  F L+                    + S  +
Sbjct: 394 -------QTYQFSQNSSEGIVEIL--NDDVFNLHD-------------------DLSANL 425

Query: 489 ATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEK 548
              +++ I     E +  Q +  ++  +A    ++ +  +   V L  +H VL+ ++   
Sbjct: 426 DEIISYFIQTRLVEKYNLQYSSNIVAELAS-QSEIMKSEIDSAVGLNRVHDVLKQMIRSP 484

Query: 549 VPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLER 608
               D  +  E+L   + ++SDP      +R      IT +      ++HV+ L      
Sbjct: 485 EFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIHVMLLSPE--- 541

Query: 609 LLLQALQGGGGLEPGLADRLLA---QTQEALSRQEMLGA-PPVLLVNHALRPLLSRFLRR 664
            L + + G    E    +RL+      +  + R  M     PVL+VN     L+  F+++
Sbjct: 542 -LTEEISGYVAGEFEDFERLIEIQRALKSEIKRLIMSHHNRPVLVVNDNELNLVKTFVQQ 600

Query: 665 SLPQLVVLSNLELSDNRHIRMTATIGGK 692
            +  L+V S+ ++ DN  I  +  I  +
Sbjct: 601 VMSTLLVCSHTDIVDNNCISSSEVINVQ 628


>UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9
           Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO
          Length = 634

 Score =  456 bits (1175), Expect = e-127,   Method: Composition-based stats.
 Identities = 178/700 (25%), Positives = 323/700 (46%), Gaps = 80/700 (11%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILIL---LILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
           + A LRL ++LK  +  +L  P  +L   L+ +++++ LP  ++D     +   S ++L+
Sbjct: 1   MIAKLRL-SSLKLRKSSLLFNPSSVLIAFLLPTIILVTLPGVVIDFFLMISFVSSALLLV 59

Query: 61  VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG 120
           + +     L+    PT++L  T  RL L++A+TR I+          G+V+E  G F++G
Sbjct: 60  IMLENDEPLKVTFLPTMVLLLTTFRLLLSIATTRNIIAN-----EDVGQVIETVGQFVMG 114

Query: 121 GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE 180
           GN   G+++F+I+ I+ F+V+TKG  R+AEVGARF LD +PGKQM ID DL +GLI  ++
Sbjct: 115 GNLLSGLLIFIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQ 174

Query: 181 AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE 240
           A+K R+++  E   +GS+DGA KFV+GDAIAGILI ++N+ GG+ VG+ Q  +S+  +  
Sbjct: 175 AQKLRADLGTENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVS 234

Query: 241 SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLS--AAV 298
            +++LT+GDGLV+QIP+L++S A GV +TR+    D     + QL +       S     
Sbjct: 235 RFSVLTVGDGLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIG 294

Query: 299 LGLLGLVPGMPNLVF--LLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWND 356
           + ++ L    PNL++  +       GLA W+  ++    A                    
Sbjct: 295 VIIIVLGIANPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHG---------- 344

Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKK--FAQEMGFLPPVVHIRDNMDLQ 414
                     +   L  +    Q   L+ R    ++K  + Q +G   P V +  +  L+
Sbjct: 345 ----------LFESLKFVFRDSQYQSLVQRNVENKEKVLWGQALGS--PAVLV--DPTLE 390

Query: 415 PARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQA 474
               ++ +  +E+ S                                 A  +     ++ 
Sbjct: 391 DD-LKVYVSDIEMYSYK----------------------------HAEAGSVVDIQNDEL 421

Query: 475 QIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTL 534
            +    V      +   +++ I     E +  Q +  ++  +AQ   ++ +  +   V L
Sbjct: 422 FVASADVASNLNNI---ISYFIHHRFIEKYNLQYSNNIVAGLAQ-QSEIMKSEIDSAVGL 477

Query: 535 TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGK 594
             +H VL+ ++       D  +  E L   + ++SDP      +R      IT      +
Sbjct: 478 NRVHDVLKQMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQE 537

Query: 595 DEVHVIGLDTPLERLLLQALQGGGGLEPGLADRLL---AQTQEALSR-QEMLGAPPVLLV 650
            +V+V+ L       L + + G    E    DRL+      +  + R     G  PV++V
Sbjct: 538 GKVNVVLLTPE----LTEEISGFVAGEFDDVDRLIAVQTGLRNEIKRLLVQYGVKPVVVV 593

Query: 651 NHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           N     ++  F ++ +  ++V S+ ++ ++  I  + TI 
Sbjct: 594 NENELNVVKAFFQQVMSTVIVCSHADIVNSNCIENSETIN 633


>UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae
           RepID=Q9Z8I0_CHLPN
          Length = 582

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/664 (21%), Positives = 276/664 (41%), Gaps = 101/664 (15%)

Query: 29  LLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLAL 88
           L IL ++ LPLP  +LD     + ALS++ +        +     FP   L+  LLRL L
Sbjct: 16  LSILVLIFLPLPQILLDFGLCISFALSLLTVCWVFTLNSSNSAKLFPPFFLYLCLLRLGL 75

Query: 89  NVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRI 148
           N+ASTR I+  G      A  ++ + G F   G+        ++L  +NF++++KG+ RI
Sbjct: 76  NLASTRWIVSSG-----TASSLIVSLGSFFSLGSLWAATFACLLLFFVNFLMVSKGSERI 130

Query: 149 AEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGD 208
           AEV +RF L+ +P KQMA+D+DL +G       KK+++ + +E DF+ +M+G  +FV+GD
Sbjct: 131 AEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIEEGDFFSAMEGVFRFVKGD 190

Query: 209 AIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIV 268
           AI   +++++N+V    V  L +  + G+A E      +GD LV+Q+PAL+ S AA  ++
Sbjct: 191 AIISCILLLVNVVS---VTCLYY--TSGYALEQMWFTVLGDALVSQVPALLTSCAAATLI 245

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328
           +++  ++ +   +            + + ++  L  +P  P    +L  + L     W+ 
Sbjct: 246 SKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPKFPIVLLASLL-----WLA 300

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIR 388
            R+++  +E   ++ A +                                Q+ +     R
Sbjct: 301 YRKEEPASEDSCIERAFSYVEGACPKE-----------------------QESQFYQVYR 337

Query: 389 SIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGT 448
           +  ++  +++G   PV+              + ++           G+ + ++  T    
Sbjct: 338 AASEEVFEDLGVRLPVLT------------SLRIEERPWLR---VFGQNVYLDEMTPEAV 382

Query: 449 LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE 508
           LP                                             +   A E    + 
Sbjct: 383 LPF--------------------------------------------LRNIAHEALNAEV 398

Query: 509 AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQ 568
            Q+ L+   +      ED+VP  ++L++L  + + L+ E+V ++    ILE +A +    
Sbjct: 399 VQKYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFPKILEAVAVYQNSG 458

Query: 569 SDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGLADRL 628
                L   VR +LG  I +  +  K  + VI +D  +E L+  +        P + + +
Sbjct: 459 DSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSYSKSN---PVMQENV 515

Query: 629 LAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688
           + +    L R         ++ +   R  + + L    P L+VLS+ EL     I     
Sbjct: 516 IRRVDSLLERSVFKDFR-AIVTSCETRFEMKKMLDPHFPDLLVLSHDELPKEIPISFLGI 574

Query: 689 IGGK 692
           +  +
Sbjct: 575 VSDE 578


>UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae
           RepID=C4PLR3_CHLTZ
          Length = 605

 Score =  419 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/681 (24%), Positives = 297/681 (43%), Gaps = 110/681 (16%)

Query: 13  NLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFA 72
           N + + W+I+A P     IL  ++  LP +++D     N+A S+ ++      + +    
Sbjct: 30  NFRGSSWKIVAIPSC---ILFTLIFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASAR 86

Query: 73  AFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVI 132
            FP++LL+  LLRL LN+ASTR IL  G      A  ++ A G+F   G+  + + V ++
Sbjct: 87  IFPSLLLYLCLLRLGLNLASTRWILSSGW-----ASPLIFALGNFFSLGSIPVALTVCLL 141

Query: 133 LVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEA 192
           L ++NF+VITKGA RIAEV ARF L+ +PGKQM++DAD+ AG IG   A  ++S + +E+
Sbjct: 142 LFLVNFLVITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEES 201

Query: 193 DFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLV 252
           D++ +M+G  +FV+GDAI   +++ +NI+  L +G   H   +        L  +GD LV
Sbjct: 202 DYFSAMEGVFRFVKGDAIMSWVLLGVNILAALFLGRATHVGDL-------WLTVLGDALV 254

Query: 253 AQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLV 312
           +QIPAL+ S AA  ++ +V   + + + +++    +    L  A +L  +  +PG P  +
Sbjct: 255 SQIPALLTSCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKAL 314

Query: 313 FLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLI 372
            L F+  L  L +                 +      VE    D  + +   +       
Sbjct: 315 ILGFSVLL-FLGY---------KNPSSGETLLFQKERVEFVLPDEGVGNPANL------- 357

Query: 373 PMVDFQQDGELLGRIRSIRKKFAQEMGFLPP-VVHIRDNMDLQPARYRILMKGVEIGSGD 431
                          +  R +  QE+G + P  + +R      P   R++  G E+   +
Sbjct: 358 --------------YKDARNQIYQELGVVFPEAIVVRHVTGSSP---RLIFSGQEVALRE 400

Query: 432 AYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATH 491
                                                     A ++    +   T+    
Sbjct: 401 LSC--------------------------------------PAILESIRQLAPETI---- 418

Query: 492 LNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPI 551
                   +     R     L+D   +      E+++P  ++  +L  +L+ L+ E+V +
Sbjct: 419 --------SERFVTR-----LVDEFREHAFLSIEEILPLKISENSLIFLLRALVRERVSL 465

Query: 552 RDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLL 611
                ILE +  +     +  EL   VR  LG+ I    +  +D + VI +D+ +E+ + 
Sbjct: 466 HLFPKILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVR 525

Query: 612 QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVV 671
            + Q    L+  L ++++AQ +  L      G    ++     R  L R +    P L+V
Sbjct: 526 DS-QEKVVLD--LNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYFPDLLV 580

Query: 672 LSNLELSDNRHIRMTATIGGK 692
           L++ EL +   I +   +  +
Sbjct: 581 LAHSELPEEIPITLLGAVSDE 601


>UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P7_DESVU
          Length = 398

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 140/289 (48%), Positives = 216/289 (74%), Gaps = 6/289 (2%)

Query: 15  KSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAF 74
             T+   LA  +L+++++++M+LPLP  ++D L   N+ALS ++L+++M+ +  L+F+ F
Sbjct: 13  AVTRHNDLAIVLLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVF 72

Query: 75  PTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILV 134
           PT+LLFTTL R+ LN+ +TR+IL++     A AG+++  FG + +GGNF +G VVFVIL 
Sbjct: 73  PTMLLFTTLFRVGLNITTTRLILLQ-----ADAGEIIFVFGEYALGGNFVVGAVVFVILT 127

Query: 135 IINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADF 194
           I+ F+VI KGA R+AEVGARF LD MPGKQM+IDAD+ AG+I  +EA++RR+ V+QE+  
Sbjct: 128 IVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQM 187

Query: 195 YGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ 254
           YG+MDGA KFV+GD+IAG+++ ++NIVGG ++G+ QHGM+ G A  +Y +LTIGDGLV+Q
Sbjct: 188 YGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQ 247

Query: 255 IPALVISTAAGVIVTRVS-TDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302
           IP+L++S +AG+++TR   +  +VG Q+  Q+F  P  +L++      L
Sbjct: 248 IPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGAGLSL 296


>UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis
           RepID=A8DVR9_NEMVE
          Length = 383

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/384 (39%), Positives = 229/384 (59%), Gaps = 8/384 (2%)

Query: 160 MPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVIN 219
           MPG+QM+IDADLN G I + EA++RR  + +EA FYG+MDGASKFV+GDAIAGI+I++IN
Sbjct: 1   MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60

Query: 220 IVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGE 279
           I+GGL++GV+QH +    A ++Y+LLTIGDG+V Q+PAL+I+   G+IVTR ++D ++ +
Sbjct: 61  IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120

Query: 280 QMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPK 339
           +++ Q+ S P  +LL  A L  L   PG+P L  L+  A +  +AW +      +  +  
Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180

Query: 340 -------PVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK 392
                    + A+     E         + + + VG     +V  Q    L+ RI + RK
Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVS-QPGSVLMDRIATFRK 239

Query: 393 KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGE 452
           + AQ++G + P V  +D   L   RY I + GV  G G+A   R LAI+P      +PGE
Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299

Query: 453 ATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQL 512
            T DP +GL A+WIE   +  A +  +T+V+A TV  THL  ++ + +A L  R E  +L
Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359

Query: 513 LDRVAQEMPKLTEDLVPGVVTLTT 536
           L+RV Q    L E+L+P V++++ 
Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383


>UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella
           melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME
          Length = 512

 Score =  352 bits (905), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 12/394 (3%)

Query: 307 GMPNLVFLLFTAGLLGLAW---WIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSL 363
           G+P   F L    +  +       + R+++A A     K  E       +       + +
Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQERNSVKASLETNQI 180

Query: 364 GMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMK 423
            + +G +L   +   Q+ EL  R+  +R+KFAQE GF+ P + + D++ L P  YRI + 
Sbjct: 181 ELCLGKQLSARLIASQE-ELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIH 239

Query: 424 GVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVE 483
           G  + S +   G  L +       ++PGE   +PAFG+ A  +        + +GY  V+
Sbjct: 240 GTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVD 299

Query: 484 ASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQN 543
             +V+ THL+ ++  + A+L   ++ + LLDR+  E  KL ED+ P  ++ + L  VL+ 
Sbjct: 300 NLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKL 359

Query: 544 LLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLD 603
           LL E++ IR++  ILE +AE AP+   P  +   VR+ + + I          ++V+ L 
Sbjct: 360 LLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSD-NGVLNVLRLG 418

Query: 604 TPLERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRP 656
              + +  Q+L+           ++P L ++   +   A+ +    G   VL+ +   RP
Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 478

Query: 657 LLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            +   + R    L VLS++E++    ++    I 
Sbjct: 479 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAIS 512


>UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6G3X4_9DELT
          Length = 602

 Score =  339 bits (871), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/640 (26%), Positives = 285/640 (44%), Gaps = 105/640 (16%)

Query: 54  LSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEA 113
            +++VL+  +  +R L+FAAFP +LL  T  RL LNV++TR+IL +     A AG+V++A
Sbjct: 37  CAVVVLVATLQIRRVLDFAAFPVLLLVLTFARLTLNVSTTRLILSQ-----ADAGRVIDA 91

Query: 114 FGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNA 173
           F   +V G+  +G V+F ++  I ++VI +GA R+AEV ARF LD +PG+Q+AID +   
Sbjct: 92  FAGLVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERAR 151

Query: 174 GLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGM 233
           G IG DEA+ RR+E+ + ADF+G MDG  + V+GDA+ G++I  IN+VGG  +G+ Q G 
Sbjct: 152 GQIGADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GA 210

Query: 234 SMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVML 293
            +  +   Y  L +GDGL+AQ+PA++++ AA ++V+RV          +      P ++L
Sbjct: 211 GLVESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAP-MLL 269

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353
             A +L +L  VPGMP L F     GLL +A ++      A     P             
Sbjct: 270 APATLLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKKLASPE------------ 317

Query: 354 WNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDL 413
                    L + V   L P +    +G L     ++R++ +  +    P + +    +L
Sbjct: 318 --------PLRVGVPASLRPELREDLEGAL----PALRQRCSATLNLPFPPLVLELRPEL 365

Query: 414 QPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQ 473
                 + ++   +                    T+   A  DP       W+ +     
Sbjct: 366 PERSLALDLEDRSLAR-----------------ETIEASAADDPD-----AWLLAGF--- 400

Query: 474 AQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVT 533
                               H +++ A+ L      +  ++R  +  P +    +    +
Sbjct: 401 --------------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAES 440

Query: 534 LTTLHKVLQNLLDEKVPIRDMRTILETLAE----HAPIQSDPHELTAVVRVALGRAITQQ 589
           +  LH + +  + E+VP+  +  +L  LAE    H P +        + R AL     ++
Sbjct: 441 IDLLH-IARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497

Query: 590 W------FPGKDEVHVIGLDTPLERLLLQALQGGGG-----LEPGLADRLLAQTQEALSR 638
                        +        LE LL+   + G       L P    R+LA+ Q     
Sbjct: 498 LHAGVCELGDPRWLRA---SPDLEDLLVARWEPGANRPRVHLSPKERQRVLARVQGE--- 551

Query: 639 QEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELS 678
                 P ++L +   RP L+  +    P + V +  EL+
Sbjct: 552 -----GPAIVLCSARARPALAALMTGLRPHVPVFALGELA 586


>UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645
           RepID=A3ZLT3_9PLAN
          Length = 489

 Score =  328 bits (841), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 172/349 (49%), Gaps = 2/349 (0%)

Query: 337 EPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQ 396
                K+  +       W      D L +EVG  LI +V  +   +   R+ ++R + A 
Sbjct: 97  AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIVAPESK-DFFDRMTAVRCQLAD 155

Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456
            +G + P + +RDN  L    YRIL+   E+      PG+++A++ GTA  TL G   VD
Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215

Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
           P FG   IWI +  + +A+  GY V+E S ++ THL   + +H+ E+    + ++L++  
Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
             +     E+L    ++L+T+H VL  LL+E V I++   +LETL  H     D   L A
Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPG-LADRLLAQTQEA 635
            VRV LGR I Q++      VH IGL+  LE  LL+    G G +     +RL+    ++
Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLELNDAGAGRKARPWVERLIDNLADS 395

Query: 636 LSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIR 684
             + E    P  L+ +  LR  L R +   LP++ VLS  E+  N  I 
Sbjct: 396 FQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEIY 444


>UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria
           MEX-5 RepID=B1TCM3_9BURK
          Length = 349

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/316 (39%), Positives = 172/316 (54%), Gaps = 5/316 (1%)

Query: 380 DGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439
                 RI + R ++A E GF+ P V  RD+  L P  Y++ + G   G    YPGR LA
Sbjct: 14  QAVFAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLA 73

Query: 440 INPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQH 499
           I+P    G LPG AT +PAFGL A+WI+   +++A+  G+T V+  T + TH+  LI  H
Sbjct: 74  IHPAGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTH 133

Query: 500 AAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILE 559
           AA LFGR E   LLD V    P L +++VP V+ +  + +VLQ LL E+VPIRD+  I++
Sbjct: 134 AARLFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQ 193

Query: 560 TLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
           TLA+ A  + DP  L   VR  LG AI Q+    +D + V+ LD  LE  + + L G  G
Sbjct: 194 TLADVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADG 253

Query: 620 -----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674
                L+P LA+  L +           G  P LL    +R  L  F RR  P+LVVLS 
Sbjct: 254 HGTHVLDPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRRALKTFSRRVAPRLVVLSI 313

Query: 675 LELSDNRHIRMTATIG 690
            E+ D   +R  AT+G
Sbjct: 314 NEVPDAIPLRAFATVG 329


>UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of
           Sitophilus zeamais RepID=Q8GAT5_9ENTR
          Length = 340

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 13/346 (3%)

Query: 165 MAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGL 224
           M+IDADL AG++ ED  KKRR  +  E+  YG++DGA KF++GDAIAGI+I+ +N++GG+
Sbjct: 1   MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60

Query: 225 LVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRV--STDQDVGEQMV 282
            VG++QHGM +  A   YT L+IGD LVAQIPAL+IS + G IVTRV  + + ++G +++
Sbjct: 61  SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120

Query: 283 NQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAW--WIRGREQKAPAEPKP 340
             LF+N S ++++A +   +G +PG P  VF++ +A L+ + +    R R +    E   
Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180

Query: 341 VKMAENNTVVEA---TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQE 397
            K A++    EA     + +     L +       P ++             ++K F  E
Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKPKLEQHNLA------SRLKKTFFIE 234

Query: 398 MGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDP 457
            G   P + I        A   I +  + +      PG    +  G     L        
Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294

Query: 458 AFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAEL 503
                + W+     + A   GY    A       ++ L++ + +E 
Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340


>UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris
           RCH1 RepID=C5U3P6_DESVU
          Length = 298

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 10/298 (3%)

Query: 400 FLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAF 459
              P +++R N  L    Y + +  + +  G    G  L  +       + G A  +   
Sbjct: 1   MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLA-MMGVAVREGER 59

Query: 460 GLN---AIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
            L     +W+        +  G   +  + ++A HL+ ++S+HA+   G QEA+ LLDR+
Sbjct: 60  FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTA 576
            +  P L  ++   ++ +  + ++ Q L+ E+V IRD+R+ILE L E +  + D   LT 
Sbjct: 120 EERAPDLVREVT-RLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTE 178

Query: 577 VVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG-----GLEPGLADRLLAQ 631
            VR AL R I+     G++ +  I LD  +E  + +A++         LEP + +R +  
Sbjct: 179 YVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVTERFMKA 238

Query: 632 TQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATI 689
             +A          PV++ +  +R  + R +      L V+S  EL+    ++    I
Sbjct: 239 VADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVNRI 296


>UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis
           RepID=Q1CE51_YERPN
          Length = 348

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 11/313 (3%)

Query: 381 GELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAI 440
             L   I  +R ++ + +G   P V IR +  L      + +    +      P   L  
Sbjct: 32  PHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLT 91

Query: 441 NPGTAAGTLPGEATVDPAFGLNA---IWIESALKEQAQIQGYTVVEASTVVATHLNHLIS 497
            P ++        T +   G       W+++    QA+  G   VE    + T L  +  
Sbjct: 92  RPCSSLV------TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFE 145

Query: 498 QHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTI 557
           ++ AE  G QE + L+D +     +L ++L    + +  + ++LQ L++E + IRD+RTI
Sbjct: 146 RYTAEFIGVQETRYLMDAMEGRYGELVKEL-QRQIPVGKVAEILQRLVEENISIRDLRTI 204

Query: 558 LETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGG 617
              L   AP + D   LT  VR+AL R + +++   K  + V+ L   +E L+  +++  
Sbjct: 205 FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQT 264

Query: 618 -GGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLE 676
             G    L +R        +          VLL    +R  + + + R L  L VLS  E
Sbjct: 265 SSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQE 324

Query: 677 LSDNRHIRMTATI 689
           L D  ++++  TI
Sbjct: 325 LGDEMNLKVAGTI 337


>UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3
           Tax=Salmonella enterica subsp. enterica serovar Typhi
           RepID=UPI000190D087
          Length = 290

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 5/293 (1%)

Query: 329 GREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELL--GR 386
            R    P   K  +         ++   +   D +  E    LI +V   +  +L     
Sbjct: 1   KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLILLVPKSRREDLEKAQL 59

Query: 387 IRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAA 446
              +R +F  + G   P V +RD   L      +L+  + +     Y      +N     
Sbjct: 60  AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119

Query: 447 GTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGR 506
            +     T+         W+     E+ +  GY +  A   +   L   ++++  E FG 
Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179

Query: 507 QEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP 566
           QE + +LD++  + P L ++++    T+  + +VLQ LL E+V +R+M+ I+E LA  AP
Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLIMEALALWAP 238

Query: 567 IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGG 619
            + D   L   +R A+ R I  ++  G  E+  + +   +E ++ + ++   G
Sbjct: 239 REKDVINLVEHIRGAMARYICHKFANG-GELRAVMVSAEVEDVIRKGIRQTSG 290


>UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU
          Length = 223

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 10/216 (4%)

Query: 482 VEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVL 541
           VE   +    L+ L++ H  +L  R+     L  +++  PKL E+LVPGV++L+ L KVL
Sbjct: 8   VEPDALAQLPLDELVACHECDLLLRKPV---LQVLSKASPKLAEELVPGVISLSGLLKVL 64

Query: 542 QNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIG 601
           Q LL E+VP+RD+R+I E +A +A    D   L AVVRV L RAI Q     + E+ VI 
Sbjct: 65  QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124

Query: 602 LDTPLERLLLQALQGGGG-------LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHAL 654
           L+  LE++LL +LQ  G        LEP +A++L     EA  RQEM G P +LLV   +
Sbjct: 125 LEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPI 184

Query: 655 RPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
           R +LSRF R ++P L VL+  E+ DN+ + + AT+G
Sbjct: 185 RAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATVG 220


>UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1
           Tax=Sordaria macrospora RepID=D1ZYL5_SORMA
          Length = 168

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 11/172 (6%)

Query: 233 MSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVM 292
           M    A   +TLLTIGDG+  Q+PAL+IS A G+IVTR ++D+++  ++  QL S P + 
Sbjct: 1   MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60

Query: 293 LLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEA 352
           L+ AAVL  L L+PGMP    ++           IR    +A AEP   ++A  +T    
Sbjct: 61  LIVAAVLAALLLLPGMPKWPIVVIGTIAFVAWRRIRKAAAEAAAEPVDEEVAAESTASP- 119

Query: 353 TWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPV 404
                     L + +G  L       +   ++ RI  +R+   ++ G   P 
Sbjct: 120 ---------PLEIRLGEALSG-AWAGEGALVMDRIAGLRRVHEEQFGLPFPP 161


>UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar
           Gallinarum RepID=Q58FD6_SALGL
          Length = 132

 Score =  114 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 236 GHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTD--QDVGEQMVNQLFSNPSVML 293
             A  +Y++L+IGDGL  QIP+L+IS +AG+IVTRV  +  Q++  ++ +Q+   P  ++
Sbjct: 1   SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60

Query: 294 LSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEAT 353
           L+A VL LL L+PG P +    F+A L      I  R +K+      V+  E +++V   
Sbjct: 61  LTAVVLMLLALIPGFPFITLAFFSALLAL--PIILIRRKKSVVSANGVEAPEKDSMVPGA 118

Query: 354 WNDVQLEDS 362
              +     
Sbjct: 119 CPLILRLSP 127


>UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KQE5_CLOPH
          Length = 266

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 90/238 (37%), Gaps = 49/238 (20%)

Query: 338 PKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIP-MVDFQQDGELLGRIRSIRKKFAQ 396
           P  +  ++N+   E  +  +   + + ++VG   +  ++   Q G    +++ +R   A+
Sbjct: 68  PTSLTESDNDKDKERLFRAIL-SEPITLKVGCGFVDYLMKENQQG--FPKLQQVRINMAK 124

Query: 397 EMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVD 456
           E G+L P V I D++ L    ++I            +  + +         +       +
Sbjct: 125 ESGYLLPTVRILDDITLDNHCFQI-----------LFYDKVVYEQNNLNPSSSEYPEIFE 173

Query: 457 PAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRV 516
                                              LN   + H  +L  RQ  + L+D +
Sbjct: 174 ----------------------------------QLNLTCTAHYEKLLHRQIVKDLIDNL 199

Query: 517 AQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHEL 574
           ++  P L +  +P  ++   +  VL++L++ K  IR++  I+E L ++  +  D   +
Sbjct: 200 SKLYPVLVDGYIPDKLSYAQIQFVLKSLIEHKKSIRNLCEIIEYLEDNLVLGKDLVSI 257


>UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum
           EbN1 RepID=Q5P877_AZOSE
          Length = 206

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/108 (62%), Positives = 87/108 (80%)

Query: 4   LAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAM 63
           +   L L A +     ++L  P+ I+++LSMMVLPLPAF LD+ FTFNIA+S+MV+LVAM
Sbjct: 1   MFEALNLRALMAPANLRMLGAPVFIIMVLSMMVLPLPAFALDVFFTFNIAISVMVMLVAM 60

Query: 64  FTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVV 111
           +T++ LEF+ FPT+LL TTLLRLALNVASTRI+L+EGHTG  AAGKV+
Sbjct: 61  YTKKPLEFSVFPTVLLVTTLLRLALNVASTRIVLLEGHTGPDAAGKVM 108



 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 4/98 (4%)

Query: 598 HVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHA 653
            V+ LD  LER+L QA+  GGG    +EP LAD LL    E   RQE +G PPVLLV   
Sbjct: 106 KVMALDPSLERILGQAVGAGGGEGGVIEPSLADGLLRHAAEVAQRQEDIGLPPVLLVPPQ 165

Query: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGG 691
           LR LLSRFLRR++P L V++N E+ + R IR+TA +GG
Sbjct: 166 LRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMVGG 203


>UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter
           sp. MED105 RepID=A6GSW7_9BURK
          Length = 106

 Score = 87.9 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 4/100 (4%)

Query: 597 VHVIGLDTPLERLLL----QALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           ++V+ ++  LE+++      A Q   G++P LA+ L  QT +A  RQE LG  PVLLV  
Sbjct: 6   LNVLVMEPKLEQMITHAHTAAGQDQVGIDPNLAENLARQTADAAGRQEQLGQSPVLLVPD 65

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIGGK 692
           ALR  ++R L+R+ P L VLS+ E+ +NR IR+   +G K
Sbjct: 66  ALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVVGAK 105


>UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1
           Tax=Sordaria macrospora RepID=D1ZYM6_SORMA
          Length = 102

 Score = 81.8 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 437 WLAINPGTAAGT-LPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHL 495
            LA++ G A G  L G+   DP FGL+AIWI+    + A   GY VV+A TV+ATHLNH+
Sbjct: 7   MLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHV 66

Query: 496 ISQHAAELFGRQEAQQLLDRVAQ 518
           ++ +A EL G  E Q LLD +  
Sbjct: 67  LTVNATELLGPDEVQALLDGLKA 89


>UniRef50_C0AUZ1 Putative uncharacterized protein n=2 Tax=Bacteria
          RepID=C0AUZ1_9ENTR
          Length = 111

 Score = 72.9 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 66/78 (84%), Positives = 74/78 (94%)

Query: 1  MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL 60
          M+NLA++LRLP N KS+QWQILAGP+LILLILSMMVLPLP F+LDLLFTFNIALSIMVLL
Sbjct: 1  MANLASLLRLPGNWKSSQWQILAGPVLILLILSMMVLPLPPFLLDLLFTFNIALSIMVLL 60

Query: 61 VAMFTQRTLEFAAFPTIL 78
          VAMFT+RTL+FAAFPTI 
Sbjct: 61 VAMFTKRTLDFAAFPTIF 78


>UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori
           HPKX_438_CA4C1 RepID=UPI000185465C
          Length = 72

 Score = 61.4 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 269 TRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIR 328
           T  + ++D   +++ QL +    +++  A+L L   +PG+P           L +AW I 
Sbjct: 3   TTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLIS 62

Query: 329 GREQK 333
              + 
Sbjct: 63  REGKD 67


>UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty RepID=UPI000190A6ED
          Length = 85

 Score = 56.0 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 41/78 (52%)

Query: 286 FSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAE 345
            +NP V++++A +   +G +PG P  VF++ +  L  L ++     +++ A+PK  K  +
Sbjct: 1   MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ 60

Query: 346 NNTVVEATWNDVQLEDSL 363
             ++ E   + + L   L
Sbjct: 61  PLSIEEKEGSSLGLIGDL 78


>UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX
          Length = 63

 Score = 51.3 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%)

Query: 644 APPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTAT 688
              VLLV   LR  L   LR     + VLS  E+S+   +++   
Sbjct: 3   EQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGR 47


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.313    0.160    0.464 

Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,845,222,568
Number of Sequences: 3077464
Number of extensions: 268578991
Number of successful extensions: 848015
Number of sequences better than 1.0e-01: 142
Number of HSP's better than  0.1 without gapping: 355
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 845369
Number of HSP's gapped (non-prelim): 1087
length of query: 692
length of database: 1,040,396,356
effective HSP length: 136
effective length of query: 556
effective length of database: 621,861,252
effective search space: 345754856112
effective search space used: 345754856112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 97 (41.7 bits)
