Phyre 2 Results for P76298

Email | l.a.kelley@imperial.ac.uk
Description | P76298
Date | Thu Jan 5 12:21:40 GMT 2012
Unique Job ID | c6d306720198cc3f

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3a5iB_ |
|  | 100.0 | 96 | PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha
2 | c3mydA_ |
|  | 100.0 | 38 | PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori
3 | c2x49A_ |
|  | 100.0 | 22 | PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva
4 | c3mixA_ |
|  | 100.0 | 36 | PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha
5 | c3lw9B_ |
|  | 100.0 | 18 | PDB header:protein transport Chain: B: PDB Molecule:invasion protein inva; PDBTitle: structure of a cytoplasmic domain of salmonella inva
6 | c1ny5A_ |
|  | 48.4 | 14 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
7 | d1lm5a_ |
|  | 47.8 | 18 | Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Plakin repeat Family:Plakin repeat
8 | c3gz6A_ |
|  | 41.5 | 18 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna
9 | c2jobA_ |
|  | 39.9 | 38 | PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
10 | d1ovma1 |
|  | 37.8 | 12 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
11 | d1wi9a_ |
|  | 37.2 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif)
12 | c3mtuD_ |
|  | 32.8 | 23 | PDB header:contractile protein Chain: D: PDB Molecule:tropomyosin alpha-1 chain, microtubule-associated protein PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
13 | c3t6kB_ |
|  | 29.0 | 22 | PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
14 | d1zh2a1 |
|  | 29.0 | 18 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
15 | d1jhna4 |
|  | 27.2 | 16 | Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Calnexin/calreticulin
16 | d2h9fa2 |
|  | 23.2 | 24 | Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like
17 | c1b35D_ |
|  | 23.0 | 22 | PDB header:virus Chain: D: PDB Molecule:protein (cricket paralysis virus, vp4); PDBTitle: cricket paralysis virus (crpv)
18 | c3cfyA_ |
|  | 22.3 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
19 | d2fswa1 |
|  | 21.4 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like
20 | c1iijA_ |
|  | 21.0 | 38 | PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
21 | c3kmgE_ |
| not modelled | 20.8 | 50 | PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide
22 | c2q2kA_ |
| not modelled | 20.1 | 34 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein
23 | c2rjnA_ |
| not modelled | 19.3 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
24 | c2zwmA_ |
| not modelled | 19.0 | 19 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
25 | c2dd4H_ |
| not modelled | 18.4 | 26 | PDB header:hydrolase Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit; PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus2 recombinant apo-enzyme
26 | c2cdqB_ |
| not modelled | 17.6 | 13 | PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine
27 | c4a5mH_ |
| not modelled | 17.4 | 20 | PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form
28 | d1qhma_ |
| not modelled | 17.1 | 50 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
29 | c2o2fA_ |
| not modelled | 17.1 | 16 | PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
30 | c2yhsA_ |
| not modelled | 16.6 | 15 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy
31 | d1zgza1 |
| not modelled | 16.3 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
32 | c3dnfB_ |
| not modelled | 16.0 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
33 | c2lkyA_ |
| not modelled | 15.2 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
34 | c3rg0A_ |
| not modelled | 15.1 | 24 | PDB header:chaperone Chain: A: PDB Molecule:calreticulin; PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin
35 | c1vj7B_ |
| not modelled | 14.9 | 17 | PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis.
36 | c2lbgA_ |
| not modelled | 14.9 | 56 | PDB header:membrane protein Chain: A: PDB Molecule:major prion protein; PDBTitle: structure of the chr of the prion protein in dpc micelles
37 | c2oviA_ |
| not modelled | 14.5 | 21 | PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux
38 | c2hfpB_ |
| not modelled | 14.5 | 54 | PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands
39 | c1fm9E_ |
| not modelled | 14.3 | 54 | PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides.
40 | c1fm6E_ |
| not modelled | 14.3 | 54 | PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides.
41 | c1k74E_ |
| not modelled | 14.3 | 54 | PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides.
42 | d1h16a_ |
| not modelled | 14.2 | 50 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
43 | c3ke8A_ |
| not modelled | 14.1 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex
44 | c1fm6V_ |
| not modelled | 14.0 | 54 | PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides.
45 | c3hjlA_ |
| not modelled | 13.7 | 14 | PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus
46 | d2fb1a1 |
| not modelled | 13.4 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Nudix-associated domain
47 | c1jscA_ |
| not modelled | 13.2 | 16 | PDB header:lyase Chain: A: PDB Molecule:acetohydroxy-acid synthase; PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors
48 | d1pvda1 |
| not modelled | 13.2 | 12 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
49 | c1p8dC_ |
| not modelled | 13.1 | 50 | PDB header:membrane protein/protein binding Chain: C: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol
50 | d2f2ea1 |
| not modelled | 13.0 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like
51 | c2cu5C_ |
| not modelled | 12.9 | 21 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:conserved hypothetical protein tt1486; PDBTitle: crystal structure of the conserved hypothetical protein tt1486 from2 thermus thermophilus hb8
52 | d1zpda1 |
| not modelled | 12.4 | 15 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain
53 | c2qzjC_ |
| not modelled | 12.3 | 8 | PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
54 | c2peoA_ |
| not modelled | 12.3 | 16 | PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from anabaena ca
55 | d2peoa1 |
| not modelled | 12.3 | 16 | Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like
56 | d1rh5a_ |
| not modelled | 12.1 | 20 | Fold:Preprotein translocase SecY subunit Superfamily:Preprotein translocase SecY subunit Family:Preprotein translocase SecY subunit
57 | c3s93B_ |
| not modelled | 12.0 | 16 | PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5
58 | d1a68a_ |
| not modelled | 11.8 | 25 | Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels
59 | c1mhsA_ |
| not modelled | 11.3 | 24 | PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase
60 | c1nw3A_ |
| not modelled | 11.2 | 23 | PDB header:transferase Chain: A: PDB Molecule:histone methyltransferase dot1l; PDBTitle: structure of the catalytic domain of human dot1l, a non-set2 domain nucleosomal histone methyltransferase
61 | d1nw3a_ |
| not modelled | 11.2 | 23 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
62 | c2kvcA_ |
| not modelled | 11.2 | 12 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
63 | d1ugpa_ |
| not modelled | 11.2 | 29 | Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain
64 | c2prgC_ |
| not modelled | 11.1 | 54 | PDB header:complex (thiazolidinedione/receptor) Chain: C: PDB Molecule:nuclear receptor coactivator src-1; PDBTitle: ligand-binding domain of the human peroxisome proliferator2 activated receptor gamma
65 | d1xhfa1 |
| not modelled | 10.7 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
66 | c3ktsA_ |
| not modelled | 10.6 | 20 | PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
67 | c2c9eA_ |
| not modelled | 10.6 | 18 | PDB header:photosynthesis Chain: A: PDB Molecule:peridinin-chlorophyll a protein; PDBTitle: peridinin-chlorophyll a protein, high-salt form
68 | d1niga_ |
| not modelled | 10.5 | 23 | Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Hypothetical protein Ta1238
69 | c2z99A_ |
| not modelled | 10.3 | 19 | PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis
70 | d1y8oa1 |
| not modelled | 10.2 | 17 | Fold:Bromodomain-like Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain
71 | c3cgxA_ |
| not modelled | 10.2 | 13 | PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution
72 | c2qr3A_ |
| not modelled | 10.2 | 15 | PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
73 | c1pjtB_ |
| not modelled | 10.0 | 11 | PDB header:transferase/oxidoreductase/lyase Chain: B: PDB Molecule:siroheme synthase; PDBTitle: the structure of the ser128ala point-mutant variant of cysg,2 the multifunctional3 methyltransferase/dehydrogenase/ferrochelatase for4 siroheme synthesis
74 | d1d8ba_ |
| not modelled | 9.9 | 23 | Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases
75 | c3df8A_ |
| not modelled | 9.9 | 24 | PDB header:transcription Chain: A: PDB Molecule:possible hxlr family transcriptional factor; PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1
76 | c6paxA_ |
| not modelled | 9.8 | 29 | PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
77 | c2q9qF_ |
| not modelled | 9.8 | 16 | PDB header:replication Chain: F: PDB Molecule:gins complex subunit 4; PDBTitle: the crystal structure of full length human gins complex
78 | d1qkka_ |
| not modelled | 9.7 | 8 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
79 | d1dsxa_ |
| not modelled | 9.7 | 27 | Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels
80 | d1orna_ |
| not modelled | 9.7 | 17 | Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III
81 | d1b0na1 |
| not modelled | 9.4 | 38 | Fold:Dimerisation interlock Superfamily:SinR repressor dimerisation domain-like Family:SinR repressor dimerisation domain-like
82 | d1wfra_ |
| not modelled | 9.3 | 27 | Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP
83 | c2ph0A_ |
| not modelled | 9.2 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41.
84 | c1cpbA_ |
| not modelled | 9.1 | 24 | PDB header:hydrolase (c-terminal peptidase) Chain: A: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution
85 | d1iuka_ |
| not modelled | 9.0 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain
86 | c2f3oB_ |
| not modelled | 8.9 | 25 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
87 | d1ni5a1 |
| not modelled | 8.9 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase
88 | c3hv2B_ |
| not modelled | 8.9 | 17 | PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
89 | c3dzdA_ |
| not modelled | 8.9 | 8 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
90 | c4ktqA_ |
| not modelled | 8.8 | 25 | PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
91 | c1p8dD_ |
| not modelled | 8.7 | 55 | PDB header:membrane protein/protein binding Chain: D: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol
92 | d2cdqa1 |
| not modelled | 8.6 | 13 | Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like
93 | c2pw0A_ |
| not modelled | 8.6 | 24 | PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis
94 | c3r0jA_ |
| not modelled | 8.5 | 22 | PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis
95 | d1ckqa_ |
| not modelled | 8.5 | 15 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI
96 | c1k7lD_ |
| not modelled | 8.4 | 55 | PDB header:transcription Chain: D: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide.
97 | c1k7lB_ |
| not modelled | 8.4 | 55 | PDB header:transcription Chain: B: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide.
98 | c1k7lF_ |
| not modelled | 8.4 | 55 | PDB header:transcription Chain: F: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide.
99 | c1k7lH_ |
| not modelled | 8.4 | 55 | PDB header:transcription Chain: H: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.5 angstrom resolution crystal structure of the human2 pparalpha ligand binding domain bound with gw409544 and a3 co-activator peptide.