19/01/2012 07:38:47 : INFO  : Run start: Thu Jan 19 07:38:45 GMT 2012
19/01/2012 07:38:58 : INFO  : Initialised job
19/01/2012 07:39:01 : INFO  : Renaming log file 'phyre2_20120119_073844.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c6d306720198cc3f/phyre_20120119_073844.log'
19/01/2012 07:39:05 : INFO  : Initialised job:
Sequence
>batch____
MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLL
VAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVG
GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDE
AKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAE
SYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLG
LLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKAPAEPKPVKMAENNTVVEATWNDVQLE
DSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRI
LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYT
VVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKV
LQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVI
GLDTPLERLLLQALQGGGGLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSR
FLRRSLPQLVVLSNLELSDNRHIRMTATIGGK

19/01/2012 07:39:07 : INFO  : Checked sequence
19/01/2012 07:39:14 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 07:39:16 : INFO  : PSI-BLAST 3 iterations
19/01/2012 07:42:54 : INFO  : PSI-BLAST 5 iterations
19/01/2012 07:45:38 : INFO  : Finished PSI-BLAST
19/01/2012 07:45:43 : INFO  : Running Buildali to generate a3m file
19/01/2012 07:59:53 : INFO  : Converting to HMM
19/01/2012 07:59:58 : INFO  : Calibrating HMM
19/01/2012 08:00:28 : INFO  : Searching HMM database
19/01/2012 08:12:56 : INFO  : Finished buildali
19/01/2012 08:12:59 : INFO  : Predicting secondary structure
19/01/2012 08:13:16 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 08:13:20 : INFO  : Predicting Disordered regions
19/01/2012 08:13:29 : INFO  : Predicted Disorder (Disopred)
19/01/2012 08:13:32 : INFO  : Running memsat_svm check
19/01/2012 08:19:25 : INFO  : Running memsat_svm full
19/01/2012 08:26:58 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c6d306720198cc3f'
19/01/2012 08:27:01 : INFO  : Initialising fold library search
19/01/2012 08:27:08 : INFO  : Initialised search input
19/01/2012 08:27:13 : INFO  : Building Ensemble models
19/01/2012 08:27:19 : INFO  : Building hh.c3a5iB_.model.1.pdb
19/01/2012 08:27:50 : INFO  : Building c3a5iB_.1.pdb
19/01/2012 08:28:22 : INFO  : Building c3mydA_.2.pdb
19/01/2012 08:28:52 : INFO  : Building c2x49A_.3.pdb
19/01/2012 08:29:21 : INFO  : Building c3mixA_.4.pdb
19/01/2012 08:29:53 : INFO  : Building c3lw9B_.5.pdb
19/01/2012 08:30:24 : INFO  : Building c1ny5A_.6.pdb
19/01/2012 08:30:53 : INFO  : Building d1lm5a_.7.pdb
19/01/2012 08:31:22 : INFO  : Building c3gz6A_.8.pdb
19/01/2012 08:31:53 : INFO  : Building c2jobA_.9.pdb
19/01/2012 08:32:25 : INFO  : Building d1ovma1.10.pdb
19/01/2012 08:32:56 : INFO  : Building d1wi9a_.11.pdb
19/01/2012 08:33:25 : INFO  : Building c3mtuD_.12.pdb
19/01/2012 08:33:54 : INFO  : Building c3t6kB_.13.pdb
19/01/2012 08:34:25 : INFO  : Building d1zh2a1.14.pdb
19/01/2012 08:34:55 : INFO  : Building d1jhna4.15.pdb
19/01/2012 08:35:28 : INFO  : Building d2h9fa2.16.pdb
19/01/2012 08:35:57 : INFO  : Building c1b35D_.17.pdb
19/01/2012 08:36:28 : INFO  : Building c3cfyA_.18.pdb
19/01/2012 08:36:58 : INFO  : Building d2fswa1.19.pdb
19/01/2012 08:37:27 : INFO  : Building c1iijA_.20.pdb
19/01/2012 08:38:32 : INFO  : Finished HH model building
19/01/2012 08:38:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 08:39:59 : INFO  : html domain output complete ID 'c6d306720198cc3f'
19/01/2012 09:00:52 : INFO  : Run end  : Thu Jan 19 09:00:50 GMT 2012
