Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	S	L	V	V	P	V	F	N	E	E	E	A	I	P	I	F	Y	K	T	V	R	E	F	E	E	L	K	S	Y	E	V	E	I	V	F	I	N	D	G	S	K	D	A	T	E	S	I	I	N	A	L	A	V	S	D	P	L
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	V	P	L	S	F	T	R	N	F	G	K	E	P	A	L	F	A	G	L	D	H	A	T	G	D	A	I	I	P	I	D	V	D	L	Q	D	P	I	E	V	I	P	H	L	I	E	K	W	Q	A	G	A	D	M	V	L	A	K	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	D	R	S	T	D	G	R	L	K	R	K	T	A	E	W	F	Y	K	L	H	N	K	I	S	N	P	K	I	E	E	N	V	G	D	F	R	L	M	S	R	D	V	V	E	N	I	K	L	M	P	E	R	N	L	F	M	K	G	I
Secondary structure
SS confidence
Disorder					?	?																																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	S	W	V	G	G	K	T	D	I	V	E	Y	V	R	A	E	R	I	A	G	D	T	K	F	N	G	W	K	L	W	N	L	A	L	E	G	I	T	S	F	S	T	F	P	L	R	I	W	T	Y	I	G	L	V	V	A	S	V	A
Secondary structure
SS confidence
Disorder																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	I	Y	G	A	W	M	I	L	D	T	I	I	F	G	N	A	V	R	G	Y	P	S	L	L	V	S	I	L	F	L	G	G	I	Q	M	I	G	I	G	V	L	G	E	Y	I	G	R	T	Y	I	E	T	K	K	R	P	K	Y	I
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.
Sequence		I	K	R	V	K	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xhb chain A Region: 2 - 215 Aligned: 211 Modelled: 214 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Phyre2 PDB 3f1y chain C Region: 2 - 224 Aligned: 223 Modelled: 223 Confidence: 100.0% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus Phyre2 PDB 2ffu chain A Region: 2 - 204 Aligned: 197 Modelled: 203 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Phyre2 PDB 2d7i chain A Region: 2 - 204 Aligned: 200 Modelled: 203 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Phyre2 PDB 1xhb chain A domain 2 Region: 2 - 215 Aligned: 211 Modelled: 214 Confidence: 100.0% Identity: 17% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Phyre2 PDB 3ckv chain A Region: 2 - 225 Aligned: 219 Modelled: 224 Confidence: 100.0% Identity: 18% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein Phyre2 PDB 2z86 chain D Region: 2 - 203 Aligned: 199 Modelled: 202 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp Phyre2 PDB 1omz chain A Region: 2 - 118 Aligned: 112 Modelled: 117 Confidence: 99.9% Identity: 14% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Exostosin Phyre2 PDB 1omx chain B Region: 2 - 118 Aligned: 112 Modelled: 117 Confidence: 99.9% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) Phyre2 PDB 3bcv chain A Region: 2 - 192 Aligned: 185 Modelled: 191 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis Phyre2 PDB 1qg8 chain A Region: 2 - 119 Aligned: 115 Modelled: 118 Confidence: 99.9% Identity: 12% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Spore coat polysaccharide biosynthesis protein SpsA Phyre2 PDB 2bo4 chain A domain 1 Region: 5 - 193 Aligned: 185 Modelled: 189 Confidence: 99.8% Identity: 18% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: MGS-like Phyre2 PDB 2qgi chain A Region: 7 - 221 Aligned: 204 Modelled: 204 Confidence: 99.7% Identity: 10% PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus Phyre2 PDB 1pzt chain A Region: 2 - 188 Aligned: 141 Modelled: 144 Confidence: 98.9% Identity: 16% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: beta 1,4 galactosyltransferase (b4GalT1) Phyre2 PDB 3lw6 chain A Region: 2 - 189 Aligned: 142 Modelled: 145 Confidence: 98.3% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 Phyre2 PDB 1fo8 chain A Region: 5 - 119 Aligned: 113 Modelled: 115 Confidence: 98.1% Identity: 10% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: N-acetylglucosaminyltransferase I Phyre2 PDB 2wvm chain A Region: 2 - 173 Aligned: 166 Modelled: 172 Confidence: 98.1% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) Phyre2 PDB 2zu8 chain A Region: 2 - 173 Aligned: 164 Modelled: 170 Confidence: 98.0% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii Phyre2 PDB 3cu0 chain A domain 1 Region: 1 - 105 Aligned: 103 Modelled: 105 Confidence: 96.9% Identity: 15% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: 1,3-glucuronyltransferase Phyre2 PDB 2px7 chain A Region: 1 - 124 Aligned: 106 Modelled: 111 Confidence: 96.5% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 Phyre2 1 c1xhbA_ 2 c3f1yC_ 3 c2ffuA_ 4 c2d7iA_ 5 d1xhba2 6 c3ckvA_ 7 c2z86D_ 8 d1omza_ 9 c1omxB_ 10 c3bcvA_ 11 d1qg8a_ 12 d2bo4a1 13 c2qgiA_ 14 d1pzta_ 15 c3lw6A_ 16 d1fo8a_ 17 c2wvmA_ 18 c2zu8A_ 19 d3cu0a1 20 c2px7A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1xhbA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 2 c3f1yC_ 100.0 13 PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus 3 c2ffuA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 4 c2d7iA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ 5 d1xhba2 100.0 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain 6 c3ckvA_ 100.0 18 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein 7 c2z86D_ 100.0 16 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 8 d1omza_ 99.9 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 9 c1omxB_ 99.9 15 PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) 10 c3bcvA_ 99.9 19 PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis 11 d1qg8a_ 99.9 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Spore coat polysaccharide biosynthesis protein SpsA 12 d2bo4a1 99.8 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MGS-like 13 c2qgiA_ 99.7 10 PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus 14 d1pzta_ 98.9 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 15 c3lw6A_ 98.3 18 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 16 d1fo8a_ 98.1 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:N-acetylglucosaminyltransferase I 17 c2wvmA_ 98.1 17 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) 18 c2zu8A_ 98.0 12 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii 19 d3cu0a1 96.9 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 20 c2px7A_ 96.5 13 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 21 c1w57A_ not modelled 95.9 13 PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn 22 d1v82a_ not modelled 95.8 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 23 c2d0jD_ not modelled 95.8 16 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 24 d1i52a_ not modelled 95.4 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 25 d1vh3a_ not modelled 95.0 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 26 c2wawA_ not modelled 92.4 10 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 27 d1w55a1 not modelled 92.4 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 28 d1vpaa_ not modelled 92.0 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 29 c3tztB_ not modelled 91.2 11 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 8; PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii. 30 d1w77a1 not modelled 88.7 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 31 d1vgwa_ not modelled 88.4 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 32 d1fxoa_ not modelled 87.0 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 33 c3oamD_ not modelled 86.8 19 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 34 c3okrA_ not modelled 84.1 14 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 35 c1ga8A_ not modelled 82.9 12 PDB header:transferase Chain: A: PDB Molecule:galactosyl transferase lgtc; PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs. 36 d1ga8a_ not modelled 82.9 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Galactosyltransferase LgtC 37 c1jylC_ not modelled 81.9 15 PDB header:transferase Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase; PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc) 38 d1lvwa_ not modelled 81.8 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 39 d1h5ra_ not modelled 80.0 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 40 c2gamA_ not modelled 79.8 8 PDB header:transferase Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase; PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,2 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex3 with galb1,3galnac 41 c2xwlB_ not modelled 79.6 10 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 42 c3d5nB_ not modelled 79.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125. 43 c1zcyA_ not modelled 77.9 10 PDB header:transferase Chain: A: PDB Molecule:glycogenin-1; PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser 44 c3hl3A_ not modelled 75.4 10 PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. 45 c3okrC_ not modelled 73.4 13 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 46 c2ywrA_ not modelled 72.6 12 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus 47 c1zctB_ not modelled 72.4 10 PDB header:transferase Chain: B: PDB Molecule:glycogenin-1; PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp 48 d1ll2a_ not modelled 67.6 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycogenin 49 d1jkxa_ not modelled 63.1 8 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 50 d1o6ca_ not modelled 62.6 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 51 d1mc3a_ not modelled 62.1 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 52 d1iina_ not modelled 61.8 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 53 d2oi6a2 not modelled 57.6 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 54 d1jyka_ not modelled 57.2 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 55 d1qwja_ not modelled 55.1 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 56 c2qh5B_ not modelled 54.4 12 PDB header:isomerase Chain: B: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori 57 c2xmhB_ not modelled 53.7 16 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 58 c3tqdA_ not modelled 47.0 19 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii 59 d1eyra_ not modelled 44.6 5 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 60 c2j0bA_ not modelled 43.7 14 PDB header:transferase Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe; PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese 61 c2x5sB_ not modelled 43.2 11 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 62 d1e5ka_ not modelled 40.1 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Molybdenum cofactor biosynthesis protein MobA 63 c3brkX_ not modelled 39.8 11 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 64 d2nx2a1 not modelled 39.4 12 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 65 c3cgxA_ not modelled 38.1 10 PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution 66 c2vshB_ not modelled 37.1 11 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 67 c2we9A_ not modelled 33.7 14 PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv 68 d2fcja1 not modelled 32.2 13 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 69 d1r6wa1 not modelled 32.1 8 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 70 c2c0nA_ not modelled 30.8 21 PDB header:viral protein/transferase Chain: A: PDB Molecule:a197; PDBTitle: crystal structure of a197 from stiv 71 c2e3dB_ not modelled 30.6 14 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase 72 c3tqrA_ not modelled 30.2 12 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 73 d1vkpa_ not modelled 30.0 11 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 74 c2yswB_ not modelled 28.6 11 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 75 c3ot5D_ not modelled 27.9 13 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 76 d1g97a2 not modelled 27.5 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 77 d2bu3a1 not modelled 26.6 9 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 78 c3f1cB_ not modelled 26.6 8 PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes 79 c2e8bA_ not modelled 26.2 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5 80 c3rsbB_ not modelled 25.5 11 PDB header:transferase Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase; PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii 81 c3dcjA_ not modelled 24.2 8 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 82 c2cu2A_ not modelled 23.5 14 PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 83 c2bmxB_ not modelled 19.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:alkyl hydroperoxidase c; PDBTitle: mycobacterium tuberculosis ahpc 84 d1t0ia_ not modelled 19.5 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 85 c2hyxA_ not modelled 17.8 9 PDB header:unknown function Chain: A: PDB Molecule:protein dipz; PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis 86 c3c3yB_ not modelled 17.6 11 PDB header:transferase Chain: B: PDB Molecule:o-methyltransferase; PDBTitle: crystal structure of pfomt, phenylpropanoid and flavonoid o-2 methyltransferase from m. crystallinum 87 d1xkna_ not modelled 16.6 16 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 88 d1di0a_ not modelled 15.1 24 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 89 c2btwA_ not modelled 14.7 9 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 90 d1h7ea_ not modelled 14.1 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 91 d1z0sa1 not modelled 13.8 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 92 c3qmzA_ not modelled 13.7 12 PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain 93 c3io3A_ not modelled 13.4 13 PDB header:chaperone Chain: A: PDB Molecule:deha2d07832p; PDBTitle: get3 with adp from d. hansenii in closed form 94 d2bmxa1 not modelled 12.9 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 95 c3kyiB_ not modelled 12.7 17 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 96 c3bzbA_ not modelled 12.2 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein cmq451c from the2 primitive red alga cyanidioschyzon merolae 97 d2cu2a2 not modelled 12.0 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:mannose-1-phosphate guanylyl transferase 98 d1k3ra2 not modelled 11.9 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 99 c3h0kA_ not modelled 11.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0200 protein sso1041; PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0