Phyre 2 alignment of P0A742 with c1ceuA_

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Job Description | P0A742
Confidence | 2.60% | Date | Thu Jan 5 11:04:44 GMT 2012
Rank | 95 | Aligned Residues | 25
% Identity | 24% | Template | c1ceuA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal | PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 107 | . | . | 110 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | 120 | . | . | . | . | . | . | . | . | . | 130 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | E | E | P | A | A | A | P | A | P | T | K | E | E | . | . | . | . | . | . | V | L | L | T | E | I | R | D | L | L | K | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | Q | A | P | E | D | Q | G | P | Q | R | E | P | Y | N | D | W | T | L | E | L | L | E | E | L | K | N | E | A | V | R
Template Known Secondary structure |  |  | S |  |  |  | T | T | T | T |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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