Phyre 2 alignment of P0A742 with c3ebjD_

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Job Description | P0A742
Confidence | 4.45% | Date | Thu Jan 5 11:04:44 GMT 2012
Rank | 39 | Aligned Residues | 24
% Identity | 21% | Template | c3ebjD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:polymerase acidic protein; | PDBTitle: crystal structure of an avian influenza virus protein
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | A | A | P | A | P | T | K | E | E | V | L | . | . | . | . | . | L | T | E | I | R | D | L | L | K | E | Q | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | A | D | Y | T | L | D | E | E | S | R | A | R | I | K | T | R | L | F | T | I | R | Q | E | M | A | S | R | G
Template Known Secondary structure |  | G | G |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 158 | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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