BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (158 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAY8 Uncharacterized protein ybjN n=158 Tax=Enterobac... 325 3e-88 UniRef50_C2LJJ0 Sensory transduction regulator n=4 Tax=Proteus R... 158 7e-38 UniRef50_Q0VNM1 Putative uncharacterized protein n=2 Tax=Alcaniv... 104 8e-22 UniRef50_A4SLU1 Putative uncharacterized protein n=2 Tax=Aeromon... 99 3e-20 UniRef50_Q2SIX5 Putative uncharacterized protein n=1 Tax=Hahella... 92 7e-18 UniRef50_B8KN40 Sensory transduction regulator n=2 Tax=unclassif... 91 1e-17 UniRef50_A4BJU4 Putative uncharacterized protein n=1 Tax=Reineke... 65 8e-10 >UniRef50_P0AAY8 Uncharacterized protein ybjN n=158 Tax=Enterobacteriaceae RepID=YBJN_ECO57 Length = 158 Score = 325 bits (832), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM Sbjct: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV Sbjct: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 Query: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH 158 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH Sbjct: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH 158 >UniRef50_C2LJJ0 Sensory transduction regulator n=4 Tax=Proteus RepID=C2LJJ0_PROMI Length = 167 Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 70/133 (52%), Positives = 107/133 (80%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M ++V LD L+ WLD+L ++F+ECD+CQALHLPH+Q +G+FDAKID++D+ ++F+A+ Sbjct: 1 MDAVVTIDLDQLKSWLDELQIAFYECDSCQALHLPHLQYINGIFDAKIDVLDDVLVFTAI 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 AE++PSA++P+ A+LS INASSL +K FL++ D+NLPKLV+ QSL + G+++ QF F+ Sbjct: 61 AELKPSAIVPVMANLSQINASSLFIKTFLEISDENLPKLVLSQSLPIAVGLSFNQFDLFL 120 Query: 121 RQSEEQISMVILE 133 ++EEQ + VI E Sbjct: 121 HKAEEQSAEVISE 133 >UniRef50_Q0VNM1 Putative uncharacterized protein n=2 Tax=Alcanivorax RepID=Q0VNM1_ALCBS Length = 183 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 89/145 (61%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M +V D +++WL + + C++C ALHL +Q +GV DA++ + ++ IL ++ Sbjct: 29 MLGVVNADADQVKRWLQQANIQHYICEHCHALHLSELQEREGVVDARLFVEEDGILLTSE 88 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 EVRP+A+ + A+L +N + +VK FLD+ DD+LP+LVVC L +GVT+EQF +FV Sbjct: 89 LEVRPAALFAVQAELGRLNMAYPSVKVFLDVNDDSLPRLVVCDLLLGRKGVTFEQFIYFV 148 Query: 121 RQSEEQISMVILEANAHQLLLPTDD 145 + + + ++ E+ LL DD Sbjct: 149 QATVDATLQLLDESQESDWLLWPDD 173 >UniRef50_A4SLU1 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SLU1_AERS4 Length = 153 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M + +P + + +WL + + CD C +H+ +Q+ DG+ +++I + + +LFS+ Sbjct: 1 MEMMNIPSSEMIMRWLQQARIEHYVCDQCHGIHIVSLQSVDGIQESRIFVEEEGLLFSSE 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 EVRPSA+LPL A+L +N ++K FLD+ DDNLP+L+V ++ G++ EQF FV Sbjct: 61 LEVRPSALLPLMAELGRLNMQYPSLKVFLDIIDDNLPRLIVGHTVFTKAGLSVEQFLLFV 120 Query: 121 RQSEEQISMVILEANAHQLL-LPTDDEGQNNV 151 + V+ E L LP G +V Sbjct: 121 ESTTAATHEVVSECERLGFLNLPEIQVGSESV 152 >UniRef50_Q2SIX5 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX5_HAHCH Length = 157 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 74/124 (59%) Query: 10 DTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMAEVRPSAVL 69 D+L +WL DL + + C CQ +H+ +Q+ +GV ++++ L ++F+ E+R SA+L Sbjct: 10 DSLLKWLKDLEVDHYLCGQCQGVHIADLQSQEGVLESRVFLEQECLIFTTEVELRASALL 69 Query: 70 PLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFVRQSEEQISM 129 L A+L +N + +K F D+ DD P++++C +L V GVT EQ F+R + E Sbjct: 70 NLVAELPRLNGAYANIKTFADLADDGAPRVIMCDTLWVSAGVTKEQLGVFLRNALEAKQD 129 Query: 130 VILE 133 ++ E Sbjct: 130 ILRE 133 >UniRef50_B8KN40 Sensory transduction regulator n=2 Tax=unclassified Gammaproteobacteria RepID=B8KN40_9GAMM Length = 157 Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%) Query: 7 PGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMAEVRPS 66 P L+QWL+ + + EC C+ LHL +++ +GV D++I L +L + E+RP Sbjct: 8 PDRALLQQWLEQARVEYSECGECEGLHLAALKSIEGVIDSRIFLERYGLLLTTELEIRPM 67 Query: 67 AVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 A+LP++ADL IN +K FLD+ DD P+LV+ L G+T EQ A F+ Sbjct: 68 ALLPMSADLGRINMDYPILKIFLDVVDDATPQLVIAGILQAQAGLTLEQTAQFI 121 >UniRef50_A4BJU4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJU4_9GAMM Length = 151 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Query: 11 TLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMAEVRPSAVLP 70 T++ W++ F C +C+ +HLP + D V +++ + + + + +RPSAVLP Sbjct: 6 TVQTWIEANNWEAFVCQDCEGIHLPAWEGRDSVLESRCFVETSRLYWLTEIAIRPSAVLP 65 Query: 71 LAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFVRQSEEQISMV 130 L + +N +K + M DD++P+L++ +L V + + F ++ Q E++ V Sbjct: 66 LQGAVHFMNYDYGLLKVMIAMADDDVPRLLLTHALPVAH-LNEQHFVSWMNQLNEEMEAV 124 Query: 131 ILEANAHQLLLPTDDE 146 +LLP D++ Sbjct: 125 YKHLAEMDVLLPEDND 140 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AAY8 Uncharacterized protein ybjN n=158 Tax=Enterobac... 219 3e-56 UniRef50_A4SLU1 Putative uncharacterized protein n=2 Tax=Aeromon... 205 4e-52 UniRef50_Q0VNM1 Putative uncharacterized protein n=2 Tax=Alcaniv... 201 7e-51 UniRef50_A4BJU4 Putative uncharacterized protein n=1 Tax=Reineke... 180 1e-44 UniRef50_Q2SIX5 Putative uncharacterized protein n=1 Tax=Hahella... 177 8e-44 UniRef50_C2LJJ0 Sensory transduction regulator n=4 Tax=Proteus R... 174 8e-43 UniRef50_B8KN40 Sensory transduction regulator n=2 Tax=unclassif... 172 2e-42 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AAY8 Uncharacterized protein ybjN n=158 Tax=Enterobacteriaceae RepID=YBJN_ECO57 Length = 158 Score = 219 bits (557), Expect = 3e-56, Method: Composition-based stats. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM Sbjct: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV Sbjct: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 Query: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH 158 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH Sbjct: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH 158 >UniRef50_A4SLU1 Putative uncharacterized protein n=2 Tax=Aeromonas RepID=A4SLU1_AERS4 Length = 153 Score = 205 bits (521), Expect = 4e-52, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M + +P + + +WL + + CD C +H+ +Q+ DG+ +++I + + +LFS+ Sbjct: 1 MEMMNIPSSEMIMRWLQQARIEHYVCDQCHGIHIVSLQSVDGIQESRIFVEEEGLLFSSE 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 EVRPSA+LPL A+L +N ++K FLD+ DDNLP+L+V ++ G++ EQF FV Sbjct: 61 LEVRPSALLPLMAELGRLNMQYPSLKVFLDIIDDNLPRLIVGHTVFTKAGLSVEQFLLFV 120 Query: 121 RQSEEQISMVILEANAHQLL-LPTDDEGQNNV 151 + V+ E L LP G +V Sbjct: 121 ESTTAATHEVVSECERLGFLNLPEIQVGSESV 152 >UniRef50_Q0VNM1 Putative uncharacterized protein n=2 Tax=Alcanivorax RepID=Q0VNM1_ALCBS Length = 183 Score = 201 bits (511), Expect = 7e-51, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 89/145 (61%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M +V D +++WL + + C++C ALHL +Q +GV DA++ + ++ IL ++ Sbjct: 29 MLGVVNADADQVKRWLQQANIQHYICEHCHALHLSELQEREGVVDARLFVEEDGILLTSE 88 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 EVRP+A+ + A+L +N + +VK FLD+ DD+LP+LVVC L +GVT+EQF +FV Sbjct: 89 LEVRPAALFAVQAELGRLNMAYPSVKVFLDVNDDSLPRLVVCDLLLGRKGVTFEQFIYFV 148 Query: 121 RQSEEQISMVILEANAHQLLLPTDD 145 + + + ++ E+ LL DD Sbjct: 149 QATVDATLQLLDESQESDWLLWPDD 173 >UniRef50_A4BJU4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJU4_9GAMM Length = 151 Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 8 GLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMAEVRPSA 67 T++ W++ F C +C+ +HLP + D V +++ + + + + +RPSA Sbjct: 3 NRKTVQTWIEANNWEAFVCQDCEGIHLPAWEGRDSVLESRCFVETSRLYWLTEIAIRPSA 62 Query: 68 VLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFVRQSEEQI 127 VLPL + +N +K + M DD++P+L++ +L V + + F ++ Q E++ Sbjct: 63 VLPLQGAVHFMNYDYGLLKVMIAMADDDVPRLLLTHALPVAH-LNEQHFVSWMNQLNEEM 121 Query: 128 SMVILEANAHQLLLPTDDE 146 V +LLP D++ Sbjct: 122 EAVYKHLAEMDVLLPEDND 140 >UniRef50_Q2SIX5 Putative uncharacterized protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIX5_HAHCH Length = 157 Score = 177 bits (450), Expect = 8e-44, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 1/158 (0%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M + D+L +WL DL + + C CQ +H+ +Q+ +GV ++++ L ++F+ Sbjct: 1 MPHIQFINSDSLLKWLKDLEVDHYLCGQCQGVHIADLQSQEGVLESRVFLEQECLIFTTE 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 E+R SA+L L A+L +N + +K F D+ DD P++++C +L V GVT EQ F+ Sbjct: 61 VELRASALLNLVAELPRLNGAYANIKTFADLADDGAPRVIMCDTLWVSAGVTKEQLGVFL 120 Query: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH 158 R + E ++ E + T D G + LH Sbjct: 121 RNALEAKQDILRECLDCGF-IATADAGAPSAPMERALH 157 >UniRef50_C2LJJ0 Sensory transduction regulator n=4 Tax=Proteus RepID=C2LJJ0_PROMI Length = 167 Score = 174 bits (441), Expect = 8e-43, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 112/150 (74%) Query: 1 MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAM 60 M ++V LD L+ WLD+L ++F+ECD+CQALHLPH+Q +G+FDAKID++D+ ++F+A+ Sbjct: 1 MDAVVTIDLDQLKSWLDELQIAFYECDSCQALHLPHLQYINGIFDAKIDVLDDVLVFTAI 60 Query: 61 AEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFV 120 AE++PSA++P+ A+LS INASSL +K FL++ D+NLPKLV+ QSL + G+++ QF F+ Sbjct: 61 AELKPSAIVPVMANLSQINASSLFIKTFLEISDENLPKLVLSQSLPIAVGLSFNQFDLFL 120 Query: 121 RQSEEQISMVILEANAHQLLLPTDDEGQNN 150 ++EEQ + VI E + L E + + Sbjct: 121 HKAEEQSAEVISEIFNNDFLYGERQENEED 150 >UniRef50_B8KN40 Sensory transduction regulator n=2 Tax=unclassified Gammaproteobacteria RepID=B8KN40_9GAMM Length = 157 Score = 172 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 72/142 (50%) Query: 2 TSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVFDAKIDLIDNTILFSAMA 61 L P L+QWL+ + + EC C+ LHL +++ +GV D++I L +L + Sbjct: 3 EKLEKPDRALLQQWLEQARVEYSECGECEGLHLAALKSIEGVIDSRIFLERYGLLLTTEL 62 Query: 62 EVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVCQSLSVMQGVTYEQFAWFVR 121 E+RP A+LP++ADL IN +K FLD+ DD P+LV+ L G+T EQ A F+ Sbjct: 63 EIRPMALLPMSADLGRINMDYPILKIFLDVVDDATPQLVIAGILQAQAGLTLEQTAQFIS 122 Query: 122 QSEEQISMVILEANAHQLLLPT 143 + + E L Sbjct: 123 SCMDATRQLAAECLQLDYLFAE 144 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.134 0.353 Lambda K H 0.267 0.0409 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 561,562,393 Number of Sequences: 3077464 Number of extensions: 18899517 Number of successful extensions: 51439 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51424 Number of HSP's gapped (non-prelim): 14 length of query: 158 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 40 effective length of database: 677,255,604 effective search space: 27090224160 effective search space used: 27090224160 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.1 bits)