Reference sequence (query): batch____ Identities normalised by aligned length. Colored by: property
HSP processing: ranked Search cycle: 2
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . 4 . . . . : . . . . 5 . . . . : . . . . 6 . . . . : . . . . 7 ] 710
batch____ bits E-value N 100.0% 1:710 MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRKLTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETRSYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMEIQAYYESCLNPQLITPSESLI
1 UniRef50_Q9ACP0 Intracellular growth attenu... 1012 0.0 1 83.9% 1:710 1:710 MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAAGLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
2 UniRef50_O86988 Flagellar operon control pr... 971 0.0 1 39.5% 2:698 3:697 -LSVIILAIFMISLFIMAAFLFFKRRRLDGSYHLPSLAKPTYRKLTQDDYGVISDYLSYFGTSKFSAGYSLQNFP----EIPTKGEVVTTLRNIVNRFAGSSEGINHWRYYIDAVEIHIPPLLVPYLQQENVLDVVCTPSIPIVIGVNGHFLKDEKSHFSALSlePILSNGTsiQKNEGDAAHLLHIRQETNEEYRLHHSSGFWNGSLICLGLILWLTALMMPQVFLPWIMAAGGTFLVLGLFLIYRPIIKSRKQEVHCFKGRLKRWGLFGNFDHGQVKNISLGGIDLVYPPHWEPYIQNDIDKVTYLEMYPNHHVIKQGPYLSLHDEEKNYPYKRYIKNIIFVVCSLFIIGMLYLYQPLSLSMKLTFSWIKESEPHLVTNFTELETAKLHVGDIIQAKGVGMCYMP--PNLSSKNNKtfAPFDCSGIYWNNSNPMPMPESSTIEKAAALLYLVEEQLHPV--SNNRVNPSLGQAITKSGMNLLDNFDGIILKTQDLCPRENECIRLKMALVNLSNVNDWPSLVQRAESGKLTGTNVLLRAVSAEALEKLVDTTTSSFIYREIDKAAILLNSPPPGGVLLISDERKQLVDYASNTNSVFEPTPLEQWRELQRLSDILLHTPFNTGGVITGMVIDANGTLQIFLHSMPDSMTLLYYIGNTLLLFFAIGFLILNLFFIIRRRRQNNQRMHKISQYYEHCF------------
3 UniRef50_B2Q5U8 Putative uncharacterized pr... 947 0.0 1 35.9% 1:700 2:693 LTYVIIMAIFIISLTIMASFLYFRRGRNSGVYQIPSQAEPSYRKMIDNDYQIISQYLRT------NPFPssAEQTPWQLKKNA---VIATVCNSVTRFNLRQEQANSWRYFIDTIEVKLPHQLEPYLQQKNVMELVETNHLPLIISLNNFSLKDFNYEWTSDDIQEIVTPEAAIHERGEPNVQVLRVRKETIEEHRLNHSSGWLGTLLICLSFLLGYLALIAIPFLQSWGFVGAFFCFVAGLLALFRLRvpKKLQDVQCVFGQPKRWELYGELDKRQSSTVSIGGIDLYYPSHWEPYIHHELNKATQIDMYPSGQVLRHGQFLSLHEEERYYPYRRYKKNLLILATGLLVLFLMFSYQSMCLPIKLGFAWLEGAEKIKVMNVAELETRKLKVGDSLSAKGVGMCY--RPPNLSDTNHAQFAPFDCSGVYWNNMNLTPDPESEVIERAIRLLNTVQKQLHPE-KNSVGVNPRLQRDIMKSGMNIIFDFSEIILKTNELCYQEHACSKLKSALTNLGSTDDWGTLVVKASTGKLSGAHVLLRAGSAEALEKLVEVTTYEFIKVEVEKEAAKLNSPPPGGVLLISDENKALVDFIVGST-FNDMTPLQRWVELKRIAGLLINTPFDVEGIITDLSTDANGTLHITLHSKPDEKVLSQYVISSLFTLFLGIGVLLNGTLVIFRIMNNKKRLRNIKRYYDKCfnP----------
4 UniRef50_D1P0D6 Flagellar operon control pr... 920 0.0 1 33.0% 1:700 2:695 LNTIIILALIVASLIIMVLFLFFRRGRRSSVYQIPSLAAPSFKKMIESDYQILSQYlhNASKNIHVPSQPAWQIKRNSI--------VATICNAVTRFNLRQEQGNSWRYFIDTVEVQLPEQLEPFLQRQNVMEIIDTDHLPLIVALNSHSLKEFSHEWSASSSVESVLPEAAIQEGEQNTIQLLKVRKESKEEHRLHNSSGWLGAIVVSLSFFLGYLTMISIPVLQGWGLTFAIIVFCIGVFLLFRLRipKPYQDVQCIYGQPKRWELYGELDKKYSSTVSIGGVDLHYPSYWTPYLKYELNQATNIDLYSSGEVVKYGRCLSIHEEERYYPYKRFKKNILMFSSALLFLVLTMTYQPISLPIKLGIAWLEGTHKVVVTDPMELSIKKIKVGDTLLAKGVGMCY--RPPNLNDENQALFVPFDCSGMYWNNINLVTEPQSETVNHAIDLLNSVKNQLHPD-KDAPGINPRLQREIMKSGMNIIFDFSEIILKTNALCGGSESCVKLKNALSNLGGsdDWSTLVKKASSGKLSGAHVLLRAGSAEALEKLVEDTTYDFIRKEIEKEIRKLNSPPPGGVLLISDENHPLVDL-IPINSFNEMTQLQRWYELQRLASILNNTPFDVQGVVTNLSVDANGTLYISLHEALNEDALPLFVCRAMFILFLAICVVINGSLIIIRVLNNKRRLRKITEYYDKCynP----------
5 UniRef50_D2U385 Flagellar operon control pr... 907 0.0 1 37.7% 34:699 49:717 ---------------------------------LPFLIHANYRKITSDEYQIICDYLKY-TNSEQILIKTKEVTIRKLFDFPKRNAWVSTGCNAITRFSLINEQDNLWRYFIDSKEVHLPRQLEPYLTTQNVMDVVYTDTLPLVISVNNHFLADFKQDFKQFHFatFPPVNALIQESGQQLVKFIKVRKETLEEYKLNRSFSLWGSGVICVGLIVCALSLFVIAIFFPWLMLFGGLTFFVGVYLLYRPYikRYQQDIRCVVGKPKRLGLFGEFDKGKKHNISLAGIDLIYPSHWEPFLEYEIDQAINIDMYANGYVVRQGRYLSLHEEARRYPYKRYGKNLMLMITSFFLMLLLHFYEPVHLPARLIFHWLNGENYRHTTNYTELEVMPLQVGDYIAVKGVGMCYVPID-LIEKGNRFDFLPFDCSGIYWNNISPSPIPESDIVEKVFSLSTTVKQQLYFNNLDH-KVNQQLRREIMKSGMNLLDNFSDIILKTNSLCPLNNECFRLKSALVNLSDTYEWSVLVARAKNGKLAGINVILRPGGAETLEKLVNETTSFYINREIEKAAALLNSPLPRGVLLISEEGKQFVDlsFHSPVIDSYTPLQKWQELQKLSDILMHTPFEAKGIITKLFVDAKGTRHIILHSKPSSMLLLRYISAFLLNLVLMATFILNFILVITRKRINKWRLKSIRQYYEHCFN-----------
6 UniRef50_B4X424 Putative uncharacterized pr... 581 1e-164 1 22.3% 85:694 75:708 ------------------------------------------------------------------------------------GNAVFALSGPYLRHGLTTNGNTVWHDTIGGVEVLLPYDAEYFLREHNDALVVLAEKKAIVVALngGEERNQRREQKQQQWESGDHGELARVVEEDEqlRIREQRDETDAEIASRRGRGL--AMLPAFLWILAFVCLGIAIGVDSSLIGsgLLFVVIALFRFFRKPSPDKPQKVNQVSgtPV---AVDEQNNVQISVTLNESIGFVLPEHWRPFIEYEDGQNQEMAVRVDDyvVSYGNRMSLDEEVRRFPPVYWGRHLTLavGATALLFPLASFTELSRDLLFTGQLLSGAQETTPQTPDAVLQQPPAIGAPVSIEGRGQCALNTDG---------YRpfDCRRIHWGSS----VPQSQHLEEPEII-----RQLRDRTLLQTRTDgsLMATMqkPVMllIDTLDSACSQSGTSSSAESQCERIHRHMLSrhQPETWTSlaVQTQAGSDDPVTAITSEAHVKALRQRLNQLANELDMERGVNIARDITNSQQGGVQI------RLVQGPVPSTLMPdsPYQASIDAMTAMIDNAAGQPFKLRGMVTDYQVVDGGTAVLSLDLTRHRDNPGNAVLNVLWLLLAAGLLAGHGLMTVIRFKQSRQRSRAVAALY----------------
7 UniRef50_C2LEI2 Possible flagellar operon c... 468 1e-130 1 33.9% 2:331 27:357 -LSVIILAIFMISLFIMAAFLFFKRRRLDGSYHLPSLAKPTYRKLTQDDYGVISDYLSYFGTSKFSSGYSLQNFP----EIPTKGEVVTTLRNIVNRFAGSSEGLNHWRYYIDAVEIHIPPLLVPYLQQENVLDVVCTPSIPIVIGVNGHFLKDEKSHFSALSlePILSNGTsiQKNEGDAAHLLHIRQETNEEYRLHHSSGFWNGSLICLGLILWLTALMMPQVFLPWIMAAGGTFLVLGLFLIYRPIIKSRKQEVHCFKGRLKRWGLFGNFDHGQVKNISLGGIDLVYPPHWEPYIQNDIDKVTYLEMYPNHHVIKQGPYLSLHDEEKN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8 UniRef50_UPI0001911667 hypothetical protein Salmon... 356 2e-96 1 85.1% 1:281 1:281 MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWFSAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAAGLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 UniRef50_C0ATY0 Putative uncharacterized pr... 272 4e-71 1 26.8% 2:210 27:236 -LSVIILAILMISLFIMAAFLFFKRRRLDGSHHLPSLAKPTYRKLTSDDYGLISDYLSYFGTSDFSSGYSLQNFP----EMPIKGEVVTTLRNIVNRFAGSSEGLNHWRYYIDAVEIHIPPLLVPYLQQENVLDVVCTPSIPIVVGVNGHFLKDEKIHFSALSlePILANGSsiQKNEGDAAHLLQIREETNEEYRLHNSSGFGMALLFV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 UniRef50_UPI000190EFBE hypothetical protein Salmon... 198 5e-49 1 82.4% 324:454 1:131 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 UniRef50_B8L3I2 Putative uncharacterized pr... 194 1e-47 1 22.4% 112:334 90:286 ---------------------------------------------------------------------------------------------------------------LGGIPVLVPRQAWPYLSEDNEAEVVLGEREAVVVRLNGFTLAAAR-----------PDAATSRVCGE---------RRETPEEVALRRGPGLRPSPLVIAALALWA-ATGVPGLLAMPLLVIAGLTVWLGLPRRNSpqVRERLRAYQRTAQTPRVW-LLGNDRRVQ------------LPEEWEHVAGFSSGRSMLLEVRadGGVLGAGTAWCLASDRRRYPP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 UniRef50_C0ATY2 Putative uncharacterized pr... 187 2e-45 1 30.5% 328:458 2:131 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKKNYPYKRYIKNIIFVFWSLFIIGMLYLYQPLSLSMKLSFSWLKDTKPHLVTNFTELETTDLHVGDIIQAKGVGMCYMP--PNLSSKNNKtfAPFDCSGIYWNNSNPMPMPESSTIEKSCRFITYGRRAI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13 UniRef50_UPI000190DBE1 intracellular growth attenu... 114 1e-23 1 75.3% 614:686 1:73 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTR------------------------
14 UniRef50_Q5XWE0 Putative intracellular grow... 77 3e-12 1 44.4% 44:115 1:70 -------------------------------------------RLTEDERIAIERYleNSQQTTPLDIPNAQPKLPRSL----QSNRVYPITHTITRYGLSTDAQNKWRYYIDKL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 UniRef50_B7PZF0 ATP-dependent RNA helicase,... 44 0.025 1 25.2% 494:608 207:317 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNKQIASKSCALSLVRQLFHLGAIDAYTGVTKKKTESKLEPYEVTVRPEIAEELQATIDALNLEVVTveVPQEPFSLRVPR-------HLEGEQVVSQPVPGGVVPWSPPQPNWN------------------------------------------------------------------------------------------------------
consensus/100% ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
consensus/90% ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
consensus/80% ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
consensus/70% ...............................................................................................................lsth.......................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................
|
MView 1.51.1, Copyright © 1997-2009 Nigel P. Brown