96 c3u62A_ Probab=98.06   E-value=0.00013  Score=48.03  Aligned_columns=151  Identities=23%

Q ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC-------CHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf             99997398699998699999999999999843789867899957689988-------98899863581007788688889
Q batch____        56 KACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGI-------DNVKVLERIHPDKDVDGFHPYNV  128 (288)
Q Consensus        56 k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PLp~~i-------d~~~i~~~I~p~KDVDGl~~~N~  128 (288)
                      ..++++|++.....+.  +.++++...++.+-.  ++.|.-|-.|.-..+       ++-+.+.+++-..--+|.+.--.
T Consensus        21 ~~~~~~gl~~~Y~~~~--v~~~~~~~~~~~l~~--~~~G~nVT~P~K~~~~~~~d~~~~a~~igavNti~~~~G~NTD~~   96 (253)
T c3u62A_          21 EYFKRAGMNHSYGMEE--IPPESFDTEIRRILE--EYDGFNATIPHKERVMRYVEPSEDAQRIKAVNCVFRGKGYNTDWV   96 (253)
T ss_dssp             HHHHHHTCCCEEEEEE--CCGGGHHHHHHHHHH--HCSEEEECTTCTTGGGGGSEECHHHHHHTCCCEEETTEEECCHHH
T ss_pred             HHHHHCCCCEEEEEEE--CCHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCCCHH
T ss_conf             9999839975799876--694568999998760--798889700028999974357956885166100243687577489


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCE-EEEEECC---------------
Q ss_conf             887339987247588999999998389735757999759661159999999857985-9998078---------------
Q batch____       129 GRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRF---------------  192 (288)
Q Consensus       129 g~l~~~~~~~~PcT~~ai~~lL~~y~i~l~Gk~v~ViGrs~iVG~Pla~lL~~~~at-Vt~~h~~---------------  192 (288)
                      |                ++.-|+..+.   +|+++|+|-+. .++..+.-|...|+. ++++.+.               
T Consensus        97 G----------------~~~~l~~~~~---~k~vlilGaGG-~a~aia~~l~~~g~~~i~I~nRt~~ra~~La~~~~~~~  156 (253)
T c3u62A_          97 G----------------VVKSLEGVEV---KEPVVVVGAGG-AARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFS  156 (253)
T ss_dssp             H----------------HHHHTTTCCC---CSSEEEECCSH-HHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEE
T ss_pred             H----------------HHHHHHCCCC---CCCEEEEECCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCEEE
T ss_conf             9----------------9975430588---88089993658-89999999997699879998389899988630475522


Q ss_pred             CCCHHHHHHHCCEEEECCCCCCC-----CCHHHCCCCCEEEEC
Q ss_conf             73178775227899984688755-----178884998388972
Q batch____       193 TKNLRHHVENADLLIVAVGKPGF-----IPGDWIKEGAIVIDV  230 (288)
Q Consensus       193 t~~l~~~~~~ADIvi~avG~~~~-----i~~~~ik~gaiVIDv  230 (288)
                      ..++.+...++|++|.|++.-..     +..++++++.+|+|+
T Consensus       157 ~~~~~~~~~~~DiiInaTpvGm~~~~~p~~~~~l~~~~~v~D~  199 (253)
T c3u62A_         157 LDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDV  199 (253)
T ss_dssp             GGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEEC
T ss_pred             HHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHCCCCCEEEEE
T ss_conf             1266640002758720344467777679896774788599995