27/01/2012 20:00:08 : INFO  : Run start: Fri Jan 27 20:00:07 GMT 2012
27/01/2012 20:00:09 : INFO  : Initialised job
27/01/2012 20:00:10 : INFO  : Renaming log file 'phyre2_20120127_200007.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c4b48b8fce851435/phyre_20120127_200007.log'
27/01/2012 20:00:11 : INFO  : Initialised job:
Sequence
>batch____
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQS
YAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLP
FLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSV
VAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARYIKGAWS
FVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEV
MRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLI

27/01/2012 20:00:11 : INFO  : Checked sequence
27/01/2012 20:00:12 : INFO  : Finding homologues with PSI-BLAST
27/01/2012 20:00:13 : INFO  : PSI-BLAST 3 iterations
27/01/2012 20:02:10 : INFO  : PSI-BLAST 5 iterations
27/01/2012 20:05:56 : INFO  : Finished PSI-BLAST
27/01/2012 20:05:56 : INFO  : Running Buildali to generate a3m file
27/01/2012 20:31:28 : INFO  : Converting to HMM
27/01/2012 20:31:41 : INFO  : Calibrating HMM
27/01/2012 20:31:54 : INFO  : Searching HMM database
27/01/2012 20:39:52 : INFO  : Finished buildali
27/01/2012 20:39:53 : INFO  : Predicting secondary structure
27/01/2012 20:39:56 : INFO  : Predicted secondary structure (PSI-Pred)
27/01/2012 20:39:56 : INFO  : Predicting Disordered regions
27/01/2012 20:39:57 : INFO  : Predicted Disorder (Disopred)
27/01/2012 20:39:58 : INFO  : Running memsat_svm check
27/01/2012 20:44:39 : INFO  : Running memsat_svm full
27/01/2012 20:47:54 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c4b48b8fce851435'
27/01/2012 20:47:55 : INFO  : Initialising fold library search
27/01/2012 20:47:55 : INFO  : Initialised search input
27/01/2012 20:47:56 : INFO  : Building Ensemble models
27/01/2012 20:47:58 : INFO  : Building hh.c3mkuA_.model.1.pdb
27/01/2012 20:48:03 : INFO  : Building c3mkuA_.1.pdb
27/01/2012 20:48:07 : INFO  : Building c1mqsB_.2.pdb
27/01/2012 20:48:10 : INFO  : Building c3j01A_.3.pdb
27/01/2012 20:48:15 : INFO  : Building d1jo5a_.4.pdb
27/01/2012 20:48:19 : INFO  : Building c1kdxB_.5.pdb
27/01/2012 20:48:24 : INFO  : Building c2vckC_.6.pdb
27/01/2012 20:48:30 : INFO  : Building d1u17a1.7.pdb
27/01/2012 20:48:35 : INFO  : Building c2nzzA_.8.pdb
27/01/2012 20:48:40 : INFO  : Building d2r6gf2.9.pdb
27/01/2012 20:48:47 : INFO  : Building d1x8qa_.10.pdb
27/01/2012 20:48:51 : INFO  : Building d1akha_.11.pdb
27/01/2012 20:48:57 : INFO  : Building d1nkzb_.12.pdb
27/01/2012 20:49:03 : INFO  : Building c3dinF_.13.pdb
27/01/2012 20:49:09 : INFO  : Building c2onkC_.14.pdb
27/01/2012 20:49:16 : INFO  : Building d2onkc1.15.pdb
27/01/2012 20:49:22 : INFO  : Building c2qdoC_.16.pdb
27/01/2012 20:49:28 : INFO  : Building c3fh6F_.17.pdb
27/01/2012 20:49:33 : INFO  : Building d2vv5a3.18.pdb
27/01/2012 20:49:38 : INFO  : Building c1wrgA_.19.pdb
27/01/2012 20:49:43 : INFO  : Building d1p7jb_.20.pdb
27/01/2012 20:49:55 : INFO  : Finished HH model building
27/01/2012 20:49:55 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/01/2012 20:50:31 : INFO  : html domain output complete ID 'c4b48b8fce851435'
27/01/2012 21:32:57 : INFO  : Run end  : Fri Jan 27 21:32:56 GMT 2012
