Phyre 2 Results for P07650

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Email | l.a.kelley@imperial.ac.uk
Description | P07650
Date | Wed Jan 25 15:20:12 GMT 2012
Unique Job ID | c4992a6616a72f2e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1otpA_
Top template information
PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
440 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | F | L | A | Q | E | I | I | R | K | K | R | D | G | H | A | L | S | D | E | E | I | R | F | F | I | N | G | I | R | D | N | T | I | S | E | G | Q | I | A | A | L | A | M | T | I | F | F | H | D | M | T | M | P | E | R | V | S | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | M | A | M | R | D | S | G | T | V | L | D | W | K | S | L | H | L | N | G | P | I | V | D | K | H | S | T | G | G | V | G | D | V | T | S | L | M | L | G | P | M | V | A | A | C | G | G | Y | I | P | M | I | S | G | R | G | L | G | H | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  | ? |  |  | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | G | T | L | D | K | L | E | S | I | P | G | F | D | I | F | P | D | D | N | R | F | R | E | I | I | K | D | V | G | V | A | I | I | G | Q | T | S | S | L | A | P | A | D | K | R | F | Y | A | T | R | D | I | T | A | T | V | D | S | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | P | L | I | T | A | S | I | L | A | K | K | L | A | E | G | L | D | A | L | V | M | D | V | K | V | G | S | G | A | F | M | P | T | Y | E | L | S | E | A | L | A | E | A | I | V | G | V | A | N | G | A | G | V | R | T | T | A | L | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | D | M | N | Q | V | L | A | S | S | A | G | N | A | V | E | V | R | E | A | V | Q | F | L | T | G | E | Y | R | N | P | R | L | F | D | V | T | M | A | L | C | V | E | M | L | I | S | G | K | L | A | K | D | D | A | E | A | R | A | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | Q | A | V | L | D | N | G | K | A | A | E | V | F | G | R | M | V | A | A | Q | K | G | P | T | D | F | V | E | N | Y | A | K | Y | L | P | T | A | M | L | T | K | A | V | Y | A | D | T | E | G | F | V | S | E | M | D | T | R | A | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | M | A | V | V | A | M | G | G | G | R | R | Q | A | S | D | T | I | D | Y | S | V | G | F | T | D | M | A | R | L | G | D | Q | V | D | G | Q | R | P | L | A | V | I | H | A | K | D | E | N | N | W | Q | E | A | A | K | A | V | K | A | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440
Sequence |  | I | K | L | A | D | K | A | P | E | S | T | P | T | V | Y | R | R | I | S | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1otpA_ |

### PDB 1otp chain A

Region: 1 - 440
Aligned: 440
Modelled: 440
Confidence: 100.0%
Identity: 100%
PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase

Phyre2
2 |
| c2j0fC_ |

### PDB 2j0f chain C

Region: 3 - 438
Aligned: 434
Modelled: 436
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design

Phyre2
3 |
| c1brwB_ |

### PDB 1brw chain B

Region: 2 - 438
Aligned: 432
Modelled: 437
Confidence: 100.0%
Identity: 43%
PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation

Phyre2
4 |
| c2dsjA_ |

### PDB 2dsj chain A

Region: 2 - 438
Aligned: 423
Modelled: 437
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8

Phyre2
5 |
| c3h5qA_ |

### PDB 3h5q chain A

Region: 2 - 440
Aligned: 433
Modelled: 436
Confidence: 100.0%
Identity: 41%
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus

Phyre2
6 |
| d2tpta2 |

### PDB 2tpt chain A domain 2

Region: 71 - 335
Aligned: 265
Modelled: 265
Confidence: 100.0%
Identity: 100%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
7 |
| c1khdD_ |

### PDB 1khd chain D

Region: 3 - 318
Aligned: 306
Modelled: 316
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum)

Phyre2
8 |
| c1v8gB_ |

### PDB 1v8g chain B

Region: 6 - 320
Aligned: 306
Modelled: 315
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8

Phyre2
9 |
| c1vquB_ |

### PDB 1vqu chain B

Region: 3 - 321
Aligned: 306
Modelled: 318
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution

Phyre2
10 |
| c1o17A_ |

### PDB 1o17 chain A

Region: 2 - 326
Aligned: 311
Modelled: 325
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)

Phyre2
11 |
| d1brwa2 |

### PDB 1brw chain A domain 2

Region: 76 - 335
Aligned: 258
Modelled: 260
Confidence: 100.0%
Identity: 47%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
12 |
| d1uoua2 |

### PDB 1uou chain A domain 2

Region: 69 - 344
Aligned: 270
Modelled: 274
Confidence: 100.0%
Identity: 47%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
13 |
| c2bpqB_ |

### PDB 2bpq chain B

Region: 3 - 320
Aligned: 305
Modelled: 318
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)

Phyre2
14 |
| d2elca2 |

### PDB 2elc chain A domain 2

Region: 78 - 319
Aligned: 237
Modelled: 242
Confidence: 100.0%
Identity: 22%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
15 |
| d1o17a2 |

### PDB 1o17 chain A domain 2

Region: 81 - 322
Aligned: 235
Modelled: 242
Confidence: 100.0%
Identity: 12%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
16 |
| d1khda2 |

### PDB 1khd chain A domain 2

Region: 76 - 318
Aligned: 230
Modelled: 243
Confidence: 100.0%
Identity: 17%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2
17 |
| d2tpta3 |

### PDB 2tpt chain A domain 3

Region: 336 - 440
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 100%
Fold: alpha/beta-Hammerhead
Superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
Family: Pyrimidine nucleoside phosphorylase C-terminal domain

Phyre2
18 |
| d1brwa3 |

### PDB 1brw chain A domain 3

Region: 336 - 438
Aligned: 102
Modelled: 103
Confidence: 100.0%
Identity: 31%
Fold: alpha/beta-Hammerhead
Superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
Family: Pyrimidine nucleoside phosphorylase C-terminal domain

Phyre2
19 |
| d1uoua3 |

### PDB 1uou chain A domain 3

Region: 336 - 438
Aligned: 95
Modelled: 103
Confidence: 99.9%
Identity: 21%
Fold: alpha/beta-Hammerhead
Superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
Family: Pyrimidine nucleoside phosphorylase C-terminal domain

Phyre2
20 |
| d2tpta1 |

### PDB 2tpt chain A domain 1

Region: 1 - 70
Aligned: 70
Modelled: 70
Confidence: 99.8%
Identity: 99%
Fold: Methionine synthase domain-like
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1otpA_ |
|  | 100.0 | 100 | PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
2 | c2j0fC_ |
|  | 100.0 | 40 | PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
3 | c1brwB_ |
|  | 100.0 | 43 | PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
4 | c2dsjA_ |
|  | 100.0 | 40 | PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
5 | c3h5qA_ |
|  | 100.0 | 41 | PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
6 | d2tpta2 |
|  | 100.0 | 100 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
7 | c1khdD_ |
|  | 100.0 | 16 | PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum)
8 | c1v8gB_ |
|  | 100.0 | 21 | PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8
9 | c1vquB_ |
|  | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution
10 | c1o17A_ |
|  | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
11 | d1brwa2 |
|  | 100.0 | 47 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
12 | d1uoua2 |
|  | 100.0 | 47 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
13 | c2bpqB_ |
|  | 100.0 | 22 | PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
14 | d2elca2 |
|  | 100.0 | 22 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
15 | d1o17a2 |
|  | 100.0 | 12 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
16 | d1khda2 |
|  | 100.0 | 17 | Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
17 | d2tpta3 |
|  | 100.0 | 100 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
18 | d1brwa3 |
|  | 100.0 | 31 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
19 | d1uoua3 |
|  | 99.9 | 21 | Fold:alpha/beta-Hammerhead Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain Family:Pyrimidine nucleoside phosphorylase C-terminal domain
20 | d2tpta1 |
|  | 99.8 | 99 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
21 | d1brwa1 |
| not modelled | 99.8 | 46 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
22 | d1uoua1 |
| not modelled | 99.7 | 36 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
23 | d1o17a1 |
| not modelled | 99.7 | 20 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
24 | d1khda1 |
| not modelled | 99.7 | 16 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
25 | d1v8ga1 |
| not modelled | 99.7 | 19 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
26 | d2elca1 |
| not modelled | 99.4 | 18 | Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
27 | d1vf7a_ |
| not modelled | 93.3 | 19 | Fold:HlyD-like secretion proteins Superfamily:HlyD-like secretion proteins Family:HlyD-like secretion proteins
28 | d1vkma_ |
| not modelled | 93.1 | 18 | Fold:Indigoidine synthase A-like Superfamily:Indigoidine synthase A-like Family:Indigoidine synthase A-like
29 | c3lnnB_ |
| not modelled | 93.1 | 27 | PDB header:metal transport Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux PDBTitle: crystal structure of zneb from cupriavidus metallidurans
30 | d1qpoa2 |
| not modelled | 92.4 | 15 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
31 | c2gu1A_ |
| not modelled | 91.9 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
32 | c2f1mA_ |
| not modelled | 91.8 | 17 | PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra
33 | c3h9iB_ |
| not modelled | 90.6 | 21 | PDB header:transport protein Chain: B: PDB Molecule:cation efflux system protein cusb; PDBTitle: crystal structure of the membrane fusion protein cusb from escherichia2 coli
34 | c1t5eB_ |
| not modelled | 89.9 | 17 | PDB header:transport protein Chain: B: PDB Molecule:multidrug resistance protein mexa; PDBTitle: the structure of mexa
35 | d1dcza_ |
| not modelled | 89.7 | 20 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
36 | c2b8gA_ |
| not modelled | 88.3 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:biotin/lipoyl attachment protein; PDBTitle: solution structure of bacillus subtilis blap biotinylated-2 form (energy minimized mean structure)
37 | d1o4ua2 |
| not modelled | 88.0 | 13 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
38 | c2hsiB_ |
| not modelled | 87.8 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium
39 | c3pajA_ |
| not modelled | 87.3 | 13 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
40 | c3tqvA_ |
| not modelled | 87.2 | 10 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis.
41 | d2pnrc1 |
| not modelled | 86.7 | 18 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
42 | c2q8iB_ |
| not modelled | 85.2 | 17 | PDB header:transferase Chain: B: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of PDBTitle: pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug2 radicicol
43 | d1o78a_ |
| not modelled | 85.0 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
44 | d2gpra_ |
| not modelled | 84.9 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
45 | d1gjxa_ |
| not modelled | 84.9 | 13 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
46 | d1glaf_ |
| not modelled | 84.3 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
47 | d1gpra_ |
| not modelled | 84.2 | 29 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
48 | d1y8ob1 |
| not modelled | 84.0 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
49 | c2dneA_ |
| not modelled | 83.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase
50 | c2dncA_ |
| not modelled | 83.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component; PDBTitle: solution structure of rsgi ruh-054, a lipoyl domain from2 human 2-oxoacid dehydrogenase
51 | c2ejmA_ |
| not modelled | 83.8 | 25 | PDB header:ligase Chain: A: PDB Molecule:methylcrotonoyl-coa carboxylase subunit alpha; PDBTitle: solution structure of ruh-072, an apo-biotnyl domain form2 human acetyl coenzyme a carboxylase
52 | d1iyua_ |
| not modelled | 83.7 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
53 | d1qapa2 |
| not modelled | 83.0 | 14 | Fold:alpha/beta-Hammerhead Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like Family:NadC N-terminal domain-like
54 | d2pa2a1 |
| not modelled | 82.5 | 21 | Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e
55 | c2ejgD_ |
| not modelled | 82.5 | 30 | PDB header:ligase Chain: D: PDB Molecule:149aa long hypothetical methylmalonyl-coa decarboxylase PDBTitle: crystal structure of the biotin protein ligase (mutation r48a) and2 biotin carboxyl carrier protein complex from pyrococcus horikoshii3 ot3
56 | d2f3ga_ |
| not modelled | 82.4 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like
57 | c2k33A_ |
| not modelled | 82.2 | 22 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:acra; PDBTitle: solution structure of an n-glycosylated protein using in2 vitro glycosylation
58 | c3n6rK_ |
| not modelled | 82.0 | 28 | PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
59 | c3fppB_ |
| not modelled | 81.8 | 37 | PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca
60 | d1k8ma_ |
| not modelled | 81.6 | 12 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
61 | d1qjoa_ |
| not modelled | 81.2 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
62 | d1laba_ |
| not modelled | 80.3 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
63 | c2jbmA_ |
| not modelled | 79.6 | 7 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human
64 | c2dn8A_ |
| not modelled | 79.1 | 13 | PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of rsgi ruh-053, an apo-biotin carboxy2 carrier protein from human transcarboxylase
65 | d1ghja_ |
| not modelled | 79.0 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
66 | c2l5tA_ |
| not modelled | 76.3 | 12 | PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase; PDBTitle: solution nmr structure of e2 lipoyl domain from thermoplasma2 acidophilum
67 | c3l0gD_ |
| not modelled | 76.1 | 15 | PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
68 | c2kccA_ |
| not modelled | 75.9 | 13 | PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: solution structure of biotinoyl domain from human acetyl-2 coa carboxylase 2
69 | c1x1oC_ |
| not modelled | 75.6 | 10 | PDB header:transferase Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8
70 | c3gnnA_ |
| not modelled | 74.5 | 13 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei
71 | c3c2vA_ |
| not modelled | 72.9 | 12 | PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of the quinolinate phosphoribosyl2 transferase (bna6) from saccharomyces cerevisiae complexed3 with prpp and the inhibitor phthalate
72 | c2yvqA_ |
| not modelled | 71.3 | 18 | PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
73 | c2qj8B_ |
| not modelled | 69.9 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:mlr6093 protein; PDBTitle: crystal structure of an aspartoacylase family protein (mlr6093) from2 mesorhizobium loti maff303099 at 2.00 a resolution
74 | c2kvcA_ |
| not modelled | 69.1 | 16 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
75 | c2b7pA_ |
| not modelled | 69.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori
76 | c3nyyA_ |
| not modelled | 68.8 | 29 | PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution
77 | d1bdoa_ |
| not modelled | 68.6 | 18 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
78 | c1qpoA_ |
| not modelled | 68.4 | 17 | PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
79 | d1e2wa2 |
| not modelled | 68.2 | 26 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
80 | d1ci3m2 |
| not modelled | 68.1 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain
81 | c2qguA_ |
| not modelled | 66.3 | 6 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
82 | c3fmcC_ |
| not modelled | 65.5 | 14 | PDB header:hydrolase Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase; PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution
83 | d1pmra_ |
| not modelled | 63.7 | 18 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
84 | d1a0pa2 |
| not modelled | 63.5 | 16 | Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core
85 | c2lkyA_ |
| not modelled | 61.3 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
86 | c2jkuA_ |
| not modelled | 59.7 | 27 | PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase
87 | c3na6A_ |
| not modelled | 54.7 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase; PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution
88 | d1vqoh1 |
| not modelled | 54.2 | 18 | Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e
89 | c1ctmA_ |
| not modelled | 53.7 | 21 | PDB header:electron transport(cytochrome) Chain: A: PDB Molecule:cytochrome f; PDBTitle: crystal structure of chloroplast cytochrome f reveals a2 novel cytochrome fold and unexpected heme ligation
90 | c4a1aH_ |
| not modelled | 52.6 | 25 | PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l10; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
91 | c1qapA_ |
| not modelled | 49.2 | 12 | PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid
92 | c2jxmB_ |
| not modelled | 48.4 | 26 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome f; PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
93 | c1e2vB_ |
| not modelled | 48.3 | 26 | PDB header:electron transport proteins Chain: B: PDB Molecule:cytochrome f; PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
94 | c2iy3A_ |
| not modelled | 46.6 | 12 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
95 | c1tu2B_ |
| not modelled | 45.7 | 19 | PDB header:electron transport Chain: B: PDB Molecule:apocytochrome f; PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
96 | d1qwya_ |
| not modelled | 45.0 | 21 | Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Peptidoglycan hydrolase LytM
97 | d1hpca_ |
| not modelled | 44.0 | 10 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
98 | c2aukA_ |
| not modelled | 43.8 | 23 | PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of e. coli rna polymerase beta' g/g' insert
99 | c3cdxB_ |
| not modelled | 43.6 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:succinylglutamatedesuccinylase/aspartoacylase; PDBTitle: crystal structure of2 succinylglutamatedesuccinylase/aspartoacylase from3 rhodobacter sphaeroides
100 | d1mula_ |
| not modelled | 43.5 | 10 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
101 | d1onla_ |
| not modelled | 43.1 | 19 | Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains
102 | c1qzwC_ |
| not modelled | 43.0 | 13 | PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
103 | c2zkrh_ |
| not modelled | 42.5 | 21 | PDB header:ribosomal protein/rna Chain: H: PDB Molecule:rna expansion segment es12; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
104 | c2edgA_ |
| not modelled | 41.7 | 10 | PDB header:biosynthetic protein Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: solution structure of the gcv_h domain from mouse glycine
105 | c2b44A_ |
| not modelled | 41.4 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm; PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form
106 | c3iftA_ |
| not modelled | 41.2 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
107 | c1q90A_ |
| not modelled | 41.2 | 26 | PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
108 | c2xhaB_ |
| not modelled | 39.3 | 17 | PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of domain 2 of thermotoga maritima n-utilization2 substance g (nusg)
109 | c2j37W_ |
| not modelled | 39.3 | 10 | PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
110 | d1b8za_ |
| not modelled | 38.6 | 10 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
111 | c2e75C_ |
| not modelled | 38.3 | 21 | PDB header:photosynthesis Chain: C: PDB Molecule:apocytochrome f; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
112 | c3mxuA_ |
| not modelled | 38.3 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
113 | d1p88a_ |
| not modelled | 38.0 | 15 | Fold:IF3-like Superfamily:EPT/RTPC-like Family:Enolpyruvate transferase, EPT
114 | c2aujD_ |
| not modelled | 37.3 | 31 | PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert
115 | c3ol4B_ |
| not modelled | 34.4 | 16 | PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
116 | d1xpja_ |
| not modelled | 33.4 | 16 | Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232
117 | c3a8jF_ |
| not modelled | 33.3 | 19 | PDB header:transferase/transport protein Chain: F: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of et-ehred complex
118 | c3d4rE_ |
| not modelled | 32.9 | 21 | PDB header:unknown function Chain: E: PDB Molecule:domain of unknown function from the pfam-b_34464 family; PDBTitle: crystal structure of a duf2118 family protein (mmp0046) from2 methanococcus maripaludis at 2.20 a resolution
119 | d1r71a_ |
| not modelled | 32.7 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like
120 | c2j7pA_ |
| not modelled | 32.3 | 13 | PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0