BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (195 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 397 e-110 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 320 1e-86 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 150 2e-35 UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 127 2e-28 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 119 5e-26 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 115 6e-25 UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 115 9e-25 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 112 5e-24 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 96 8e-19 UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 63 6e-09 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 54 2e-06 UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaero... 45 0.001 UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escheri... 44 0.002 UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkh... 43 0.005 UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comam... 43 0.006 UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodo... 43 0.007 UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alter... 42 0.014 UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Siderox... 39 0.075 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL Sbjct: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 Query: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL Sbjct: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 Query: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL Sbjct: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 Query: 181 TELISKISLKKAFQK 195 TELISKISLKKAFQK Sbjct: 181 TELISKISLKKAFQK 195 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 158/186 (84%), Positives = 167/186 (89%), Gaps = 1/186 (0%) Query: 11 PNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDY 70 P + +SDMQA ME+TQAFENRVLERLNAGKTVRS LI AVELLTEAVN+LVLQVFRKDDY Sbjct: 9 PADDVSDMQAMMEETQAFENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVFRKDDY 68 Query: 71 AVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFT 130 AVKYAVEPLLDG GPLGDLSVRLKLIYGLGVI+R EYED ELLMALREELNHDGN+YAFT Sbjct: 69 AVKYAVEPLLDGSGPLGDLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFT 128 Query: 131 DDEILGPFGELHCVAALPP-PPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISL 189 DDEILGPFGELHCV ALPP PP E +D L MQ QRYQQ VRSTMVLSLTEL+S+ISL Sbjct: 129 DDEILGPFGELHCVVALPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRISL 188 Query: 190 KKAFQK 195 KKAFQK Sbjct: 189 KKAFQK 194 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/186 (44%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Query: 16 SDMQATMEQTQA---FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 S + +T +Q A E+ +LERLN TVR F IT V++LTEA++ L+ ++FRKD++AV Sbjct: 8 SRLNSTTDQFMAEKINESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIFRKDNFAV 67 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K VEPLL GPLGDL+VRLKL++GLGVI + + D E L+ LR +LNHD EY FTD Sbjct: 68 KSVVEPLLHDTGPLGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDP 127 Query: 133 EILGPFGELHCVA--ALPPPPQFEPADS---SLYAMQIQRYQQAVRSTMVLSLTELISKI 187 +IL P L+ V + EP D S Y +Q+QR QQ ++S + L++ ++ + + Sbjct: 128 QILAPIKALNLVKKMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNAL 187 Query: 188 SLKKAF 193 + F Sbjct: 188 NKDSPF 193 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/162 (42%), Positives = 100/162 (61%), Gaps = 3/162 (1%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E+ VLERLN R F + V +L EAV+ L+ + FR+++YAVKYA+EPLL+ GPLG Sbjct: 6 EDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAFRQEEYAVKYAIEPLLNQSGPLGQ 65 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 L VRLKLI+ LG+I+ + Y+D E + +R+ L D +Y F+D I LH V+ Sbjct: 66 LEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLHGVSQGG 125 Query: 149 PPPQFEPA---DSSLYAMQIQRYQQAVRSTMVLSLTELISKI 187 PQ PA D Y MQ+ R Q VRS +VL++ + ++++ Sbjct: 126 MMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTEL 167 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 102/164 (62%), Gaps = 4/164 (2%) Query: 28 FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLG 87 F+ ++E L+ +T F + +L +AV++L+ VFRKDDYAVKYAVEPLL DGPL Sbjct: 9 FDIDIVETLSEAETPYDFFTASFDLFEDAVDILIQNVFRKDDYAVKYAVEPLLSRDGPLA 68 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL 147 L VR+KL+YGLG++++ Y+D E + L+E + +G F ++ + VA + Sbjct: 69 HLPVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEFLSLALIERLNAIRAVAKI 128 Query: 148 PPP----PQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKI 187 PP Q E + + M++++ +Q ++S+++L++TE+I ++ Sbjct: 129 LPPNLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKEL 172 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E+ + E+LN +VR F+I V + EAV+ L+ +VFRK D+ V+ ++ L DGPLGD Sbjct: 4 EDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTDFVVQSVIDSLFTNDGPLGD 63 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGE----LHCV 144 LSVRLK++ GLGVI + D + +E LN D EY F DDEI+ F + L Sbjct: 64 LSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTF-DDEIVLTFLQKLTLLMDK 122 Query: 145 AALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 +AL P E +S Y M+ R ++ +RS ++L++ ++ ++ ++ F Sbjct: 123 SALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQLQIESPF 171 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 99/164 (60%), Gaps = 4/164 (2%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E +LE L+ K L+ A + + + ++ L+ +F KDDYAVKY V+PLL DGPLGD Sbjct: 26 ETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIFHKDDYAVKYVVDPLLTNDGPLGD 85 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 + VR KL+ GLGVI+++ ++D ++ + LRE H N+ +FT+ ++L ++ + + Sbjct: 86 ILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQKMM 145 Query: 149 PPPQFEPA----DSSLYAMQIQRYQQAVRSTMVLSLTELISKIS 188 P E D + M ++R+ Q V+ST++L++TEL+ + Sbjct: 146 PIEYDESMTDGLDVVMLEMFLERHYQRVKSTIILAITELVETLC 189 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 104/163 (63%), Gaps = 3/163 (1%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E+ V ERL + R F I V++L +AV+ L+ + FR+++YAVKYA+EPLL+G GPL D Sbjct: 11 EDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAFRQEEYAVKYAIEPLLNGKGPLAD 70 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 L +RLKLI+ LG+I+ + +D E + LR+ L +D +++ F ++ + LH + + Sbjct: 71 LHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLHSLQNIS 130 Query: 149 PPPQFEPADSS---LYAMQIQRYQQAVRSTMVLSLTELISKIS 188 EP D++ L +Q+ R Q +RS ++L+++ ++S++S Sbjct: 131 MMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELS 173 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 28 FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLG 87 + + +E+L+ ++R F +V + + L+ +VFRK D+A+K V+ L + GPL Sbjct: 3 YSDNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTDFALKSVVDSLFEHQGPLA 62 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL 147 +L+VRLKL+ GLGVI+ +ED L + ++++L+ + E F+ I+ +LH + Sbjct: 63 ELTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHIDLS 122 Query: 148 PP------PPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLK 190 P E DS LY MQ R ++ +RS+++L++TE+ K++++ Sbjct: 123 PVADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLNVE 171 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 1/105 (0%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVF-RKDDYAVKYAVEPLLDGDGPLG 87 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 D+ V L+LIY LG +++ Y D LN F DD Sbjct: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADD 110 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%) Query: 31 RVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLS 90 +LE + SFL + +L+ + L+ +F +D+ ++YAVEPLL DGPL Sbjct: 6 ELLETVEECDDATSFLCASNKLINLKLKALLPNIFVQDELVMEYAVEPLLKEDGPLVTTD 65 Query: 91 VRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEI 134 V KL++ +G I+ + Y D L + E ++ +F DD I Sbjct: 66 VVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMI 109 >UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8J6_SPHTD Length = 247 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%) Query: 35 RLNAGK-TVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRL 93 RLN + + R + A L A+ L+ + F D A K+ +LDG G L + R+ Sbjct: 65 RLNLNRESDRGCALMAAAYLDTALMELLQRFFVDDQKASKH----ILDGTGVLSSFAARI 120 Query: 94 KLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELH---CVAALPPP 150 +L Y +G+I+ + ED + +R E H +E F D EI +L+ V LP Sbjct: 121 ELAYLIGLISPKLREDLNRIRRIRNEFAHTSSEVRFDDPEIAKLCNDLYHDPLVNQLPRS 180 Query: 151 PQ 152 P+ Sbjct: 181 PR 182 >UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escherichia coli O26:H11 str. 11368 RepID=C8TP86_ECO26 Length = 279 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 +L F D+ A K +E + PLG S R+K + LG+I +Y+D ELL +R + Sbjct: 40 MLLTFMLDNKASKELIEGF---NAPLGTFSSRIKACFSLGLITEGQYKDLELLRKIRNKF 96 Query: 121 NHDGNEYAFTDDEI 134 +H + D +I Sbjct: 97 SHSWENISIEDQDI 110 >UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAV0_9BURK Length = 180 Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 77 EPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILG 136 E L GPL S R+ + Y G I+++ Y + EL+ +R H E +F DE+ G Sbjct: 75 EKLFGAMGPLATFSQRIAVAYAFGFIDKELYRNIELIRKIRNYFAHHPFEGSFESDEVKG 134 >UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY67_COMTE Length = 166 Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%) Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K ++E L G PLG S R+K Y LG+I E+ + +L+ +R E H + F ++ Sbjct: 48 KESLELLEGGSAPLGTFSARIKASYCLGLITDLEHRELQLIRKVRNEFAHQTHGLTFQNE 107 Query: 133 EILGPFGEL 141 +I G L Sbjct: 108 KIASLCGNL 116 >UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodopirellula baltica RepID=Q7UIL1_RHOBA Length = 316 Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 68 DDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEY 127 DD V V L G LG S R+ Y LG+I D L+ +R E H Sbjct: 175 DDSKV---VSELFSHSGTLGTFSSRIDTAYALGLIGPNTRRDINLIRKIRNEFGHSHYTL 231 Query: 128 AFTDDEILGPFGEL 141 FTDD I EL Sbjct: 232 KFTDDRIRSRCKEL 245 >UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3I7_9GAMM Length = 172 Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Query: 70 YAVKYAVEPLLDG-DGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYA 128 +A + + L+ G + PLG + ++ + LG+I E+ + L+ +R E H + Sbjct: 45 FADNRSGKDLISGFNAPLGTFAAKVTAAHALGLIQDNEFREITLIRKIRNEFGHSWRGVS 104 Query: 129 FTDDEILGPFGELHCVAALP--PPPQFE 154 F D++ H V LP PP+FE Sbjct: 105 FESDKV------AHLVNQLPWCGPPEFE 126 >UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3A3_9PROT Length = 183 Score = 39.3 bits (90), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Query: 43 RSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI 102 RS + L + +L+L+ K D A + LL PLG S ++K+ + L +I Sbjct: 28 RSCALLGAAYLDHCLEILLLRALVKCD-----ATDNLLGETNPLGTFSAKIKIAFSLNLI 82 Query: 103 NRQEYEDAELLMALREELNHDGNEYAFTDDEI 134 ++D E++ +R H N +F+ D I Sbjct: 83 PLVIFQDLEVIRKIRNAFAHQLNGLSFSCDPI 114 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 259 3e-68 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 234 9e-61 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 202 5e-51 UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 195 6e-49 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 185 6e-46 UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 179 3e-44 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 178 1e-43 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 175 7e-43 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 172 7e-42 UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 123 2e-27 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 117 2e-25 UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaero... 108 8e-23 Sequences not found previously or not previously below threshold: UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodo... 80 4e-14 UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clost... 68 1e-10 UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Siderox... 66 7e-10 UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkh... 63 7e-09 UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereu... 60 3e-08 UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsie... 59 1e-07 UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comam... 57 4e-07 UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limno... 55 1e-06 UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alter... 55 2e-06 UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escheri... 54 3e-06 UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewane... 52 1e-05 UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Plancto... 47 3e-04 UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID... 44 0.003 UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkhol... 42 0.009 UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polarom... 42 0.011 UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Ocean... 41 0.020 UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryan... 40 0.052 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 259 bits (663), Expect = 3e-68, Method: Composition-based stats. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL Sbjct: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 Query: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL Sbjct: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 Query: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL Sbjct: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 Query: 181 TELISKISLKKAFQK 195 TELISKISLKKAFQK Sbjct: 181 TELISKISLKKAFQK 195 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 234 bits (598), Expect = 9e-61, Method: Composition-based stats. Identities = 158/186 (84%), Positives = 167/186 (89%), Gaps = 1/186 (0%) Query: 11 PNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDY 70 P + +SDMQA ME+TQAFENRVLERLNAGKTVRS LI AVELLTEAVN+LVLQVFRKDDY Sbjct: 9 PADDVSDMQAMMEETQAFENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVFRKDDY 68 Query: 71 AVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFT 130 AVKYAVEPLLDG GPLGDLSVRLKLIYGLGVI+R EYED ELLMALREELNHDGN+YAFT Sbjct: 69 AVKYAVEPLLDGSGPLGDLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFT 128 Query: 131 DDEILGPFGELHCVAALPP-PPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISL 189 DDEILGPFGELHCV ALPP PP E +D L MQ QRYQQ VRSTMVLSLTEL+S+ISL Sbjct: 129 DDEILGPFGELHCVVALPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRISL 188 Query: 190 KKAFQK 195 KKAFQK Sbjct: 189 KKAFQK 194 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 202 bits (514), Expect = 5e-51, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Query: 16 SDMQATMEQTQA---FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 S + +T +Q A E+ +LERLN TVR F IT V++LTEA++ L+ ++FRKD++AV Sbjct: 8 SRLNSTTDQFMAEKINESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIFRKDNFAV 67 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K VEPLL GPLGDL+VRLKL++GLGVI + + D E L+ LR +LNHD EY FTD Sbjct: 68 KSVVEPLLHDTGPLGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDP 127 Query: 133 EILGPFGELHCVAALPP--PPQFEPADS---SLYAMQIQRYQQAVRSTMVLSLTELISKI 187 +IL P L+ V + EP D S Y +Q+QR QQ ++S + L++ ++ + + Sbjct: 128 QILAPIKALNLVKKMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNAL 187 Query: 188 SLKKAF 193 + F Sbjct: 188 NKDSPF 193 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 195 bits (496), Expect = 6e-49, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E+ VLERLN R F + V +L EAV+ L+ + FR+++YAVKYA+EPLL+ GPLG Sbjct: 6 EDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAFRQEEYAVKYAIEPLLNQSGPLGQ 65 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 L VRLKLI+ LG+I+ + Y+D E + +R+ L D +Y F+D I LH V+ Sbjct: 66 LEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLHGVSQGG 125 Query: 149 PPPQFEPA---DSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKA 192 PQ PA D Y MQ+ R Q VRS +VL++ + ++++ + Sbjct: 126 MMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTELHKESP 172 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 185 bits (470), Expect = 6e-46, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 103/167 (61%), Gaps = 3/167 (1%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 E+ V ERL + R F I V++L +AV+ L+ + FR+++YAVKYA+EPLL+G GPL D Sbjct: 11 EDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAFRQEEYAVKYAIEPLLNGKGPLAD 70 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 L +RLKLI+ LG+I+ + +D E + LR+ L +D +++ F ++ + LH + + Sbjct: 71 LHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLHSLQNIS 130 Query: 149 PPPQFEPADS---SLYAMQIQRYQQAVRSTMVLSLTELISKISLKKA 192 EP D+ L +Q+ R Q +RS ++L+++ ++S++S Sbjct: 131 MMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELSKDSP 177 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 4/170 (2%) Query: 28 FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLG 87 E +LE L+ K L+ A + + + ++ L+ +F KDDYAVKY V+PLL DGPLG Sbjct: 25 NETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIFHKDDYAVKYVVDPLLTNDGPLG 84 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL 147 D+ VR KL+ GLGVI+++ ++D ++ + LRE H N+ +FT+ ++L ++ + + Sbjct: 85 DILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQKM 144 Query: 148 PPPPQFEPA----DSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 P E D + M ++R+ Q V+ST++L++TEL+ + Sbjct: 145 MPIEYDESMTDGLDVVMLEMFLERHYQRVKSTIILAITELVETLCRDNPL 194 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 178 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 4/170 (2%) Query: 28 FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLG 87 F+ ++E L+ +T F + +L +AV++L+ VFRKDDYAVKYAVEPLL DGPL Sbjct: 9 FDIDIVETLSEAETPYDFFTASFDLFEDAVDILIQNVFRKDDYAVKYAVEPLLSRDGPLA 68 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL 147 L VR+KL+YGLG++++ Y+D E + L+E + +G F ++ + VA + Sbjct: 69 HLPVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEFLSLALIERLNAIRAVAKI 128 Query: 148 PPP----PQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 PP Q E + + M++++ +Q ++S+++L++TE+I ++ Sbjct: 129 LPPNLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKELHRDTPL 178 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 175 bits (444), Expect = 7e-43, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 3/171 (1%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 E+ + E+LN +VR F+I V + EAV+ L+ +VFRK D+ V+ ++ L DGP Sbjct: 1 MLSEDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTDFVVQSVIDSLFTNDGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGE---LH 142 LGDLSVRLK++ GLGVI + D + +E LN D EY F D+ +L + L Sbjct: 61 LGDLSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTFDDEIVLTFLQKLTLLM 120 Query: 143 CVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 +AL P E +S Y M+ R ++ +RS ++L++ ++ ++ ++ F Sbjct: 121 DKSALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQLQIESPF 171 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 172 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 + + +E+L+ ++R F +V + + L+ +VFRK D+A+K V+ L + GP Sbjct: 1 MPYSDNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTDFALKSVVDSLFEHQGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 L +L+VRLKL+ GLGVI+ +ED L + ++++L+ + E F+ I+ +LH + Sbjct: 61 LAELTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHID 120 Query: 146 ALP------PPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 P E DS LY MQ R ++ +RS+++L++TE+ K++++ Sbjct: 121 LSPVADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLNVESPL 174 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRK-DDYAVKYAVEPLLDGDGPLG 87 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCV 144 D+ V L+LIY LG +++ Y D LN F DD ++ + Sbjct: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSI 122 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 4/158 (2%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 + +LE + SFL + +L+ + L+ +F +D+ ++YAVEPLL DGP Sbjct: 1 MSQNIELLETVEECDDATSFLCASNKLINLKLKALLPNIFVQDELVMEYAVEPLLKEDGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 L V KL++ +G I+ + Y D L + E ++ +F DD I ++ Sbjct: 61 LVTTDVVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMIYDFISNQAILS 120 Query: 146 ALPPPPQFEPAD----SSLYAMQIQRYQQAVRSTMVLS 179 E + SS RY+ +++ + LS Sbjct: 121 TQQDSFYLESINQLKFSSFEVFSQMRYESLIKTVLKLS 158 >UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8J6_SPHTD Length = 247 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%) Query: 35 RLNAG-KTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRL 93 RLN ++ R + A L A+ L+ + F D A K+ +LDG G L + R+ Sbjct: 65 RLNLNRESDRGCALMAAAYLDTALMELLQRFFVDDQKASKH----ILDGTGVLSSFAARI 120 Query: 94 KLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHC---VAALPPP 150 +L Y +G+I+ + ED + +R E H +E F D EI +L+ V LP Sbjct: 121 ELAYLIGLISPKLREDLNRIRRIRNEFAHTSSEVRFDDPEIAKLCNDLYHDPLVNQLPRS 180 Query: 151 PQ 152 P+ Sbjct: 181 PR 182 >UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodopirellula baltica RepID=Q7UIL1_RHOBA Length = 316 Score = 80.1 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 16/148 (10%) Query: 14 RLSDMQATMEQTQAFENRVLE-RLNAG-KTVRSFLITAVELLTEAVNLLVLQVFRKDDYA 71 +S + Q V+E R + +T R + L + L+ +F D Sbjct: 124 DVSQFDGFPQHFQ----EVMEFRFSLNSETDRGCALMVASFLDHKLGKLLEAMFVDDSK- 178 Query: 72 VKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTD 131 V L G LG S R+ Y LG+I D L+ +R E H FTD Sbjct: 179 ---VVSELFSHSGTLGTFSSRIDTAYALGLIGPNTRRDINLIRKIRNEFGHSHYTLKFTD 235 Query: 132 DEILGPFGELHCVAALPPPPQFEPADSS 159 D I EL + E D Sbjct: 236 DRIRSRCKELFHFNNI------ESTDDP 257 >UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clostridium botulinum B1 str. Okra RepID=B1IMR2_CLOBK Length = 231 Score = 68.1 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 9/127 (7%) Query: 16 SDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYA 75 +++ M++T F + + E +T R + + L + + L+ D Sbjct: 38 NELPKIMQETMKFRSSLTE-----ETDRGCALISASFLDKQLEELIKSYLVND----TNI 88 Query: 76 VEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEIL 135 V + +G LG S R+ + Y LG+I ++ D ++ +R E H+ +F I Sbjct: 89 VNNIFSSNGALGTFSSRIDMAYLLGLIGKKARRDLHIIRKIRNEFGHNPEPISFDTQSIQ 148 Query: 136 GPFGELH 142 EL+ Sbjct: 149 NRCVELY 155 >UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3A3_9PROT Length = 183 Score = 65.8 bits (159), Expect = 7e-10, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 RS + L + +L+L+ K D A + LL PLG S ++K+ + Sbjct: 24 NADDRSCALLGAAYLDHCLEILLLRALVKCD-----ATDNLLGETNPLGTFSAKIKIAFS 78 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 L +I ++D E++ +R H N +F+ D I L Sbjct: 79 LNLIPLVIFQDLEVIRKIRNAFAHQLNGLSFSCDPIKSLARGL 121 >UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAV0_9BURK Length = 180 Score = 62.7 bits (151), Expect = 7e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 40 KTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGL 99 ++ R I A L + + + A E L GPL S R+ + Y Sbjct: 43 ESDRGAAILAGSFLEHYLGVYLQSKTVDAKVA-----EKLFGAMGPLATFSQRIAVAYAF 97 Query: 100 GVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 G I+++ Y + EL+ +R H E +F DE+ G L P Sbjct: 98 GFIDKELYRNIELIRKIRNYFAHHPFEGSFESDEVKGKVLSLSTYGGSP 146 >UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereus group RepID=C2ML91_BACCE Length = 318 Score = 60.4 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 9/163 (5%) Query: 13 NRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 R + + Q FE + + R ++ ++ ++ L+ K D Sbjct: 13 ERFTKNNEYLIAFQEFEKEL-----ENSSDRGMVLVCGSIIDRLLHDLLKSFLIKSDNVE 67 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K L +G L ++K+ Y LG+I+++E ++ L +R + H +F + Sbjct: 68 K----DLFKSNGVLATFDAKIKMAYYLGLISKKEQQNITYLQRIRNKFAHQFLGISFESN 123 Query: 133 EILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRST 175 +I G PP D + R+T Sbjct: 124 DIANICGNFEIPKNSFVPPLIPFPDKETGELPKVELNPIKRTT 166 >UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsiella variicola At-22 RepID=D0YDH1_KLEVA Length = 181 Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 27 AFENRVLERLNA--GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDG-D 83 AF +V E ++ ++ R ++ A ++ E + L+ + + L G Sbjct: 10 AFSQKVREIIDMLWPESDRGCVLVASSMIEEGLLELISSFL----LPPTNSKDELFHGPA 65 Query: 84 GPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELH 142 PL L R+ + Y LG+I + + + LR E H F L E++ Sbjct: 66 APLSSLESRIAMAYRLGLITKSVAKSLGVFRKLRNEFAHRIETVNFDSPSALNRLNEIY 124 >UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY67_COMTE Length = 166 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 38 AGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIY 97 +T R + LL + ++ L+ K ++E L G PLG S R+K Y Sbjct: 17 QAETDRGAALVGAALLDKQLHDLLRSHLLDK----KESLELLEGGSAPLGTFSARIKASY 72 Query: 98 GLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 LG+I E+ + +L+ +R E H + F +++I G L Sbjct: 73 CLGLITDLEHRELQLIRKVRNEFAHQTHGLTFQNEKIASLCGNL 116 >UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limnobacter sp. MED105 RepID=A6GLI2_9BURK Length = 181 Score = 55.0 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 G+T R + A + + L + + A E L GPL S R+ L Sbjct: 36 GETDRGAAVIAAGFVDNYLGLYLRSLAVDSKVA-----EELFQSMGPLSSFSQRITLARA 90 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHC 143 G I++Q+YED L+ +R H + F E+ +L Sbjct: 91 FGFISKQDYEDLTLIRKIRNHFAHHPLDTTFGIQEVSKLSIKLSD 135 >UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3I7_9GAMM Length = 172 Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 14/133 (10%) Query: 31 RVLERLNA--GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 + E L+ ++ R + A +L + + ++ + F + + + + + PLG Sbjct: 9 ELSEFLSEFNKESDRGAALNAAAVLDDWLGNILGEFFADN----RSGKDLISGFNAPLGT 64 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 + ++ + LG+I E+ + L+ +R E H +F D++ H V LP Sbjct: 65 FAAKVTAAHALGLIQDNEFREITLIRKIRNEFGHSWRGVSFESDKVA------HLVNQLP 118 Query: 149 P--PPQFEPADSS 159 PP+FE + Sbjct: 119 WCGPPEFEAKSTP 131 >UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escherichia coli O26:H11 str. 11368 RepID=C8TP86_ECO26 Length = 279 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Query: 41 TVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLG 100 R +++ +A+ ++L F D+ A K +E + PLG S R+K + LG Sbjct: 21 DERGLILSLAAFSEDALGKMLLT-FMLDNKASKELIEGF---NAPLGTFSSRIKACFSLG 76 Query: 101 VINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELH 142 +I +Y+D ELL +R + +H + D +I L Sbjct: 77 LITEGQYKDLELLRKIRNKFSHSWENISIEDQDISQQIKALS 118 >UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewanella baltica OS195 RepID=A9L6C3_SHEB9 Length = 189 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%) Query: 19 QATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAV-----NLLVLQVFRKDD-YAV 72 + + + F +LE ++ R ++ AV ++ + + L+ + + D+ + + Sbjct: 3 DSLTKTFKEFMEIILE-----ESDRGSVLVAVSMIEDVLGCLLKARLLPSLDKNDELFDI 57 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 YA P G S ++ L Y +G IN+ + +L +R + H N F+ Sbjct: 58 GYA---------PFGTFSAKIDLAYRVGCINQHTRQSCHILRKIRNDFAHATNIKGFSHS 108 Query: 133 EILGPFGELHCVAALPPPPQFE 154 +L + + E Sbjct: 109 CTQDRIKDLFSLNKVLVSSYEE 130 >UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG94_9PLAN Length = 220 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 15/105 (14%) Query: 33 LERLNA--------GKTVRSFLITAVELLTEAVNLLVLQVFR-------KDDYAVKYAVE 77 LE LN ++ R ++ A + EA+ L+ QVF D +A + Sbjct: 16 LEDLNEEFRYEIVLNESDRGAVLVASAFVEEALEHLLRQVFTVKSCNTSDDKFASQLNRL 75 Query: 78 PLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNH 122 D PLG S R+ L Y LG+I+ E L LR H Sbjct: 76 TKSGIDAPLGSFSSRITLAYVLGIIDVDYLTALEALRNLRNSYAH 120 >UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VKY8_ALCBS Length = 190 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 19/172 (11%) Query: 30 NRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGD-GPLGD 88 + E ++ ++ R +I A +L E++ ++ + + LL+G PLG Sbjct: 14 SDYYELISE-ESDRGAVIVAASILDESLGEILKTFLLRPS----TKKDNLLEGAYAPLGS 68 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELH------ 142 S +++L + LG+I + + L ++R ++ H + + D++ E+ Sbjct: 69 FSAKIELSFRLGIIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEILNTTPDI 128 Query: 143 -------CVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKI 187 + A E DS L +R + S + ++ T++ I Sbjct: 129 THQMIKILIQAGLDISHKERGDSFLDTYGCRRTFDLLFSMVCMATTQIAKTI 180 >UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkholderia phage KS9 RepID=C7BGG4_9CAUD Length = 191 Score = 42.3 bits (98), Expect = 0.009, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%) Query: 30 NRVLERLNA------GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGD 83 + +ER ++ RS +I L E + L+L+V + A + L + + Sbjct: 11 DPSVERSAEFLQWLLNESERSAVILGGALADEELLALMLKVMPSPNKA----EDRLFEPE 66 Query: 84 GPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 PLG S R+ L + +G+I+ + LR H TDD + Sbjct: 67 RPLGSFSSRITLAHRIGLIDDDFARGLNWVRDLRNHFAHRVEHAKLTDDAYRDRVTNI 124 >UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTT5_POLNA Length = 265 Score = 41.9 bits (97), Expect = 0.011, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 13/142 (9%) Query: 17 DMQATMEQTQAFENRV--LERLNA---GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYA 71 ++ +EQ FE V E++ + R + A + + + + Sbjct: 54 RVKEFVEQASPFEAEVTLFEQIAGLVVSEEARVIPVIAAAYADDRLEEMFKREIPD---G 110 Query: 72 VKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTD 131 V L+ G GPL LS RL++ + G +++ + + + +R +L+H + Sbjct: 111 VPGGRSALMSGFGPLARLSQRLQMAFAFGWLSKDLLIEFDHIRKIRNDLSH-----KWDV 165 Query: 132 DEILGPFGELHCVAALPPPPQF 153 + ++ E P Q Sbjct: 166 ELLVRKMNEFIEEKQTPFEEQL 187 >UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DSJ7_9RHOB Length = 178 Score = 41.2 bits (95), Expect = 0.020, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 7/153 (4%) Query: 16 SDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYA 75 +D+ ++ T E + ++ R + + L + + + + A + Sbjct: 4 ADLNTYID-TLYSEKENFWKSTEQESDRGLALVCMAYLEGKLEDCLFEYMDRSPEARE-- 60 Query: 76 VEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEIL 135 LL GPLG + R+ + L +I+R + +R E H F D + Sbjct: 61 ---LLKPSGPLGTMVARINMCICLKIIHRNTGRMLRVAAKIRNEFAHTFQA-TFDDSPVK 116 Query: 136 GPFGELHCVAALPPPPQFEPADSSLYAMQIQRY 168 L + P S+ + + ++ Sbjct: 117 ELSISLLSDFNVENKPSDARTCFSVAMLMLDKH 149 >UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMA4_9FIRM Length = 131 Score = 39.6 bits (91), Expect = 0.052, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 6/109 (5%) Query: 18 MQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVE 77 M +++ + V L K++RS +I L + L+ + ++ K + Sbjct: 15 MGNFVDEFNMWMQAVQRELQE-KSMRSTIIICAATLDTQLEKLIKNILLQE----KNTDD 69 Query: 78 PLLDG-DGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGN 125 + +G + L S ++ L Y +G+I+ E + + + +R + H+ + Sbjct: 70 DIFEGGNATLSTFSAKITLAYYMGLISEHERKTLDCIRKIRNKAAHEID 118 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacter... 240 2e-62 UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteria... 217 2e-55 UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepI... 189 6e-47 UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae ... 187 2e-46 UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auens... 173 2e-42 UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales R... 173 3e-42 UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas in... 165 6e-40 UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellacea... 161 9e-39 UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellacea... 160 2e-38 UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereu... 143 3e-33 UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodo... 137 1e-31 UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae ... 134 2e-30 UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clost... 125 6e-28 UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alter... 122 5e-27 UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaero... 119 6e-26 UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkh... 119 8e-26 UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobact... 117 2e-25 UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comam... 113 4e-24 UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewane... 112 5e-24 UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limno... 107 1e-22 UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Siderox... 107 2e-22 UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsie... 102 8e-21 UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escheri... 98 2e-19 UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Plancto... 92 7e-18 Sequences not found previously or not previously below threshold: UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkhol... 78 1e-13 UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID... 75 1e-12 UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryan... 72 8e-12 UniRef50_Q89U28 Bll1591 protein n=1 Tax=Bradyrhizobium japonicum... 69 8e-11 UniRef50_Q31PC2 Putative uncharacterized protein n=2 Tax=Synecho... 68 2e-10 UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Ocean... 67 3e-10 UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polarom... 62 1e-08 UniRef50_C6E2D1 Putative uncharacterized protein n=1 Tax=Geobact... 55 2e-06 UniRef50_B3T2N2 Putative uncharacterized protein n=2 Tax=environ... 46 6e-04 UniRef50_Q7NDP9 Glr4184 protein n=1 Tax=Gloeobacter violaceus Re... 46 6e-04 UniRef50_B4W0U6 Putative uncharacterized protein n=1 Tax=Microco... 44 0.004 UniRef50_A6GX45 Putative uncharacterized protein n=1 Tax=Flavoba... 41 0.022 UniRef50_C9QKA1 Putative uncharacterized protein n=1 Tax=Vibrio ... 41 0.026 UniRef50_Q1VCG4 Putative uncharacterized protein n=1 Tax=Vibrio ... 41 0.028 UniRef50_A5FDX1 Putative uncharacterized protein n=1 Tax=Flavoba... 40 0.038 >UniRef50_P0AF11 Mannitol operon repressor n=146 Tax=Enterobacteriaceae RepID=MTLR_ECOL6 Length = 195 Score = 240 bits (613), Expect = 2e-62, Method: Composition-based stats. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL Sbjct: 1 MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLL 60 Query: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL Sbjct: 61 VLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREEL 120 Query: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL Sbjct: 121 NHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSL 180 Query: 181 TELISKISLKKAFQK 195 TELISKISLKKAFQK Sbjct: 181 TELISKISLKKAFQK 195 >UniRef50_C9Y4J2 Mannitol operon repressor n=5 Tax=Enterobacteriaceae RepID=C9Y4J2_CROTZ Length = 194 Score = 217 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 158/186 (84%), Positives = 167/186 (89%), Gaps = 1/186 (0%) Query: 11 PNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDY 70 P + +SDMQA ME+TQAFENRVLERLNAGKTVRS LI AVELLTEAVN+LVLQVFRKDDY Sbjct: 9 PADDVSDMQAMMEETQAFENRVLERLNAGKTVRSLLIAAVELLTEAVNILVLQVFRKDDY 68 Query: 71 AVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFT 130 AVKYAVEPLLDG GPLGDLSVRLKLIYGLGVI+R EYED ELLMALREELNHDGN+YAFT Sbjct: 69 AVKYAVEPLLDGSGPLGDLSVRLKLIYGLGVISRAEYEDCELLMALREELNHDGNDYAFT 128 Query: 131 DDEILGPFGELHCVAALPP-PPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISL 189 DDEILGPFGELHCV ALPP PP E +D L MQ QRYQQ VRSTMVLSLTEL+S+ISL Sbjct: 129 DDEILGPFGELHCVVALPPAPPALESSDPQLIQMQKQRYQQVVRSTMVLSLTELLSRISL 188 Query: 190 KKAFQK 195 KKAFQK Sbjct: 189 KKAFQK 194 >UniRef50_A0KFQ6 Mannitol operon repressor n=2 Tax=Aeromonas RepID=A0KFQ6_AERHH Length = 173 Score = 189 bits (479), Expect = 6e-47, Method: Composition-based stats. Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 3/172 (1%) Query: 25 TQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDG 84 T E+ VLERLN R F + V +L EAV+ L+ + FR+++YAVKYA+EPLL+ G Sbjct: 2 TTHQEDEVLERLNEQDGPRGFFLEVVTILEEAVDSLMRRAFRQEEYAVKYAIEPLLNQSG 61 Query: 85 PLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCV 144 PLG L VRLKLI+ LG+I+ + Y+D E + +R+ L D +Y F+D I LH V Sbjct: 62 PLGQLEVRLKLIFALGLISLERYQDLEAYLKIRDFLVRDPKDYRFSDKPIRDLLARLHGV 121 Query: 145 AALPPPPQFEPA---DSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 + PQ PA D Y MQ+ R Q VRS +VL++ + ++++ + Sbjct: 122 SQGGMMPQEAPANEEDWPFYQMQLNRLDQVVRSALVLAVADCVTELHKESPI 173 >UniRef50_A5F154 Mannitol operon repressor n=49 Tax=Vibrionaceae RepID=A5F154_VIBC3 Length = 193 Score = 187 bits (474), Expect = 2e-46, Method: Composition-based stats. Identities = 82/186 (44%), Positives = 118/186 (63%), Gaps = 8/186 (4%) Query: 16 SDMQATMEQTQA---FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 S + +T +Q A E+ +LERLN TVR F IT V++LTEA++ L+ ++FRKD++AV Sbjct: 8 SRLNSTTDQFMAEKINESDILERLNQTHTVRGFFITTVDVLTEAIDALMQRIFRKDNFAV 67 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K VEPLL GPLGDL+VRLKL++GLGVI + + D E L+ LR +LNHD EY FTD Sbjct: 68 KSVVEPLLHDTGPLGDLTVRLKLLFGLGVIPDEVFHDIEHLIKLRNQLNHDATEYQFTDP 127 Query: 133 EILGPFGELHCVAALPP--PPQFEPADS---SLYAMQIQRYQQAVRSTMVLSLTELISKI 187 +IL P L+ V + EP D S Y +Q+QR QQ ++S + L++ ++ + + Sbjct: 128 QILAPIKALNLVKKMGMLHLNVVEPDDDIDLSFYHLQLQRQQQVIKSGLSLAIIQICNAL 187 Query: 188 SLKKAF 193 + F Sbjct: 188 NKDSPF 193 >UniRef50_C4L8P5 Mannitol repressor, MtlR n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8P5_TOLAT Length = 178 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 103/169 (60%), Gaps = 3/169 (1%) Query: 28 FENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLG 87 E+ V ERL + R F I V++L +AV+ L+ + FR+++YAVKYA+EPLL+G GPL Sbjct: 10 QEDAVFERLAEPENPRGFFIEVVDMLEDAVDQLMRRAFRQEEYAVKYAIEPLLNGKGPLA 69 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL 147 DL +RLKLI+ LG+I+ + +D E + LR+ L +D +++ F ++ + LH + + Sbjct: 70 DLHIRLKLIFALGLISYEVSQDIERFIRLRDFLVNDIHDHRFGEECVKDHLNRLHSLQNI 129 Query: 148 PPPPQFEPADS---SLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 EP D+ L +Q+ R Q +RS ++L+++ ++S++S Sbjct: 130 SMMQIDEPTDNADPVLQQLQLNRRDQVIRSALLLAVSGVLSELSKDSPI 178 >UniRef50_A6CYD5 Mannitol repressor protein n=4 Tax=Vibrionales RepID=A6CYD5_9VIBR Length = 195 Score = 173 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 4/171 (2%) Query: 27 AFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPL 86 E +LE L+ K L+ A + + + ++ L+ +F KDDYAVKY V+PLL DGPL Sbjct: 24 PNETELLEALSEAKDASECLMAAYDAIDDTLDTLINSIFHKDDYAVKYVVDPLLTNDGPL 83 Query: 87 GDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAA 146 GD+ VR KL+ GLGVI+++ ++D ++ + LRE H N+ +FT+ ++L ++ + Sbjct: 84 GDILVRAKLLLGLGVISKEVFDDIDIFVTLREWTKHQENDVSFTERDVLFELNKISAIQK 143 Query: 147 LPPPPQFEPA----DSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 + P E D + M ++R+ Q V+ST++L++TEL+ + Sbjct: 144 MMPIEYDESMTDGLDVVMLEMFLERHYQRVKSTIILAITELVETLCRDNPL 194 >UniRef50_A1SR49 Mannitol repressor, MtlR n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SR49_PSYIN Length = 179 Score = 165 bits (418), Expect = 6e-40, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 102/172 (59%), Gaps = 4/172 (2%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 F+ ++E L+ +T F + +L +AV++L+ VFRKDDYAVKYAVEPLL DGP Sbjct: 7 LKFDIDIVETLSEAETPYDFFTASFDLFEDAVDILIQNVFRKDDYAVKYAVEPLLSRDGP 66 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 L L VR+KL+YGLG++++ Y+D E + L+E + +G F ++ + VA Sbjct: 67 LAHLPVRIKLLYGLGLLSQGSYQDIEKFIGLKEFVQSEGESIEFLSLALIERLNAIRAVA 126 Query: 146 ALPPP----PQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 + PP Q E + + M++++ +Q ++S+++L++TE+I ++ Sbjct: 127 KILPPNLGDNQLEESSHYIVQMKLEQNRQVIKSSLILAITEIIKELHRDTPL 178 >UniRef50_Q0I4Y3 Mannitol operon repressor n=5 Tax=Pasteurellaceae RepID=Q0I4Y3_HAES1 Length = 171 Score = 161 bits (408), Expect = 9e-39, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 3/171 (1%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 E+ + E+LN +VR F+I V + EAV+ L+ +VFRK D+ V+ ++ L DGP Sbjct: 1 MLSEDPIYEKLNGTVSVRGFMIAIVAIFEEAVDSLINRVFRKTDFVVQSVIDSLFTNDGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCV- 144 LGDLSVRLK++ GLGVI + D + +E LN D EY F D+ +L +L + Sbjct: 61 LGDLSVRLKVLLGLGVIQHNLFSDVNAFIQFKETLNKDEKEYTFDDEIVLTFLQKLTLLM 120 Query: 145 --AALPPPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 +AL P E +S Y M+ R ++ +RS ++L++ ++ ++ ++ F Sbjct: 121 DKSALDFEPLIEDKNSLTYQMKSLRREKIIRSCLILTIADIYRQLQIESPF 171 >UniRef50_B0BRV4 Mannitol operon repressor n=7 Tax=Pasteurellaceae RepID=B0BRV4_ACTPJ Length = 174 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 + + +E+L+ ++R F +V + + L+ +VFRK D+A+K V+ L + GP Sbjct: 1 MPYSDNFIEQLSEVPSLRGFFALSVNQFAQNIERLIQRVFRKTDFALKSVVDSLFEHQGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 L +L+VRLKL+ GLGVI+ +ED L + ++++L+ + E F+ I+ +LH + Sbjct: 61 LAELTVRLKLLLGLGVISAAVFEDISLFIEVKQQLSDEVEELPFSHPAIVQFAKDLHHID 120 Query: 146 ALP------PPPQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAF 193 P E DS LY MQ R ++ +RS+++L++TE+ K++++ Sbjct: 121 LSPVADLLKFASSVENKDSMLYQMQQIRLERVMRSSLILAITEINEKLNVESPL 174 >UniRef50_C2ML91 Mannitol operon repressor n=2 Tax=Bacillus cereus group RepID=C2ML91_BACCE Length = 318 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 9/163 (5%) Query: 13 NRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 R + + Q FE + + R ++ ++ ++ L+ K D Sbjct: 13 ERFTKNNEYLIAFQEFEKEL-----ENSSDRGMVLVCGSIIDRLLHDLLKSFLIKSDNVE 67 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K L +G L ++K+ Y LG+I+++E ++ L +R + H +F + Sbjct: 68 K----DLFKSNGVLATFDAKIKMAYYLGLISKKEQQNITYLQRIRNKFAHQFLGISFESN 123 Query: 133 EILGPFGELHCVAALPPPPQFEPADSSLYAMQIQRYQQAVRST 175 +I G PP D + R+T Sbjct: 124 DIANICGNFEIPKNSFVPPLIPFPDKETGELPKVELNPIKRTT 166 >UniRef50_Q7UIL1 Probable mannitol operon repressor n=1 Tax=Rhodopirellula baltica RepID=Q7UIL1_RHOBA Length = 316 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 47/146 (32%), Gaps = 12/146 (8%) Query: 14 RLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVK 73 +S + Q LN +T R + L + L+ +F D Sbjct: 124 DVSQFDGFPQHFQEVM-EFRFSLN-SETDRGCALMVASFLDHKLGKLLEAMFVDDSK--- 178 Query: 74 YAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDE 133 V L G LG S R+ Y LG+I D L+ +R E H FTDD Sbjct: 179 -VVSELFSHSGTLGTFSSRIDTAYALGLIGPNTRRDINLIRKIRNEFGHSHYTLKFTDDR 237 Query: 134 ILGPFGELHCVAALPPPPQFEPADSS 159 I EL + E D Sbjct: 238 IRSRCKELFHFNNI------ESTDDP 257 >UniRef50_B5ESH8 Transcriptional regulator n=10 Tax=Vibrionaceae RepID=B5ESH8_VIBFM Length = 172 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 4/158 (2%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 + +LE + SFL + +L+ + L+ +F +D+ ++YAVEPLL DGP Sbjct: 1 MSQNIELLETVEECDDATSFLCASNKLINLKLKALLPNIFVQDELVMEYAVEPLLKEDGP 60 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 L V KL++ +G I+ + Y D L + E ++ +F DD I ++ Sbjct: 61 LVTTDVVSKLMFAMGKISLETYADIGLYAQVLEYAQSQPDKLSFGDDMIYDFISNQAILS 120 Query: 146 ALPPPPQFEPAD----SSLYAMQIQRYQQAVRSTMVLS 179 E + SS RY+ +++ + LS Sbjct: 121 TQQDSFYLESINQLKFSSFEVFSQMRYESLIKTVLKLS 158 >UniRef50_B1IMR2 Probable mannitol operon repressor n=1 Tax=Clostridium botulinum B1 str. Okra RepID=B1IMR2_CLOBK Length = 231 Score = 125 bits (315), Expect = 6e-28, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 16 SDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYA 75 +++ M++T F + + E +T R + + L + + L+ D Sbjct: 38 NELPKIMQETMKFRSSLTE-----ETDRGCALISASFLDKQLEELIKSYLVND----TNI 88 Query: 76 VEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEIL 135 V + +G LG S R+ + Y LG+I ++ D ++ +R E H+ +F I Sbjct: 89 VNNIFSSNGALGTFSSRIDMAYLLGLIGKKARRDLHIIRKIRNEFGHNPEPISFDTQSIQ 148 Query: 136 GPFGELHCVA 145 EL+ Sbjct: 149 NRCVELYYYN 158 >UniRef50_A0Y3I7 Probable mannitol operon repressor n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y3I7_9GAMM Length = 172 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 64/153 (41%), Gaps = 21/153 (13%) Query: 31 RVLERLNA--GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGD 88 + E L+ ++ R + A +L + + ++ + F + + + + + PLG Sbjct: 9 ELSEFLSEFNKESDRGAALNAAAVLDDWLGNILGEFFADN----RSGKDLISGFNAPLGT 64 Query: 89 LSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 + ++ + LG+I E+ + L+ +R E H +F D++ H V LP Sbjct: 65 FAAKVTAAHALGLIQDNEFREITLIRKIRNEFGHSWRGVSFESDKVA------HLVNQLP 118 Query: 149 P--PPQFEPADSSLYAMQIQRYQQAVRSTMVLS 179 PP+FE + R+ + ++L+ Sbjct: 119 WCGPPEFEAKSTP-----RARFNSVI--AILLA 144 >UniRef50_D1C8J6 Putative uncharacterized protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8J6_SPHTD Length = 247 Score = 119 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 8/133 (6%) Query: 35 RLNAG-KTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRL 93 RLN ++ R + A L A+ L+ + F D A K+ +LDG G L + R+ Sbjct: 65 RLNLNRESDRGCALMAAAYLDTALMELLQRFFVDDQKASKH----ILDGTGVLSSFAARI 120 Query: 94 KLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHC---VAALPPP 150 +L Y +G+I+ + ED + +R E H +E F D EI +L+ V LP Sbjct: 121 ELAYLIGLISPKLREDLNRIRRIRNEFAHTSSEVRFDDPEIAKLCNDLYHDPLVNQLPRS 180 Query: 151 PQFEPADSSLYAM 163 P+ + S+ + Sbjct: 181 PRAKFITVSMSVL 193 >UniRef50_B9BAV0 Probable mannitol operon repressor n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BAV0_9BURK Length = 180 Score = 119 bits (297), Expect = 8e-26, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 5/110 (4%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 ++ R I A L + + + A E L GPL S R+ + Y Sbjct: 42 KESDRGAAILAGSFLEHYLGVYLQSKTVDAKVA-----EKLFGAMGPLATFSQRIAVAYA 96 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALP 148 G I+++ Y + EL+ +R H E +F DE+ G L P Sbjct: 97 FGFIDKELYRNIELIRKIRNYFAHHPFEGSFESDEVKGKVLSLSTYGGSP 146 >UniRef50_P11663 Uncharacterized protein yggD n=72 Tax=Enterobacteriaceae RepID=YGGD_ECOLI Length = 169 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 29 ENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRK-DDYAVKYAVEPLLDGDGPLG 87 E+ VLE+L+A + SF+ TA +L + + + +F D+ V+YAV+PLL GPL Sbjct: 6 EDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLD 65 Query: 88 DLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCV 144 D+ V L+LIY LG +++ Y D LN F DD ++ + Sbjct: 66 DIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQDETPGFADDMTWDFISNVNSI 122 >UniRef50_D0IY67 Probable mannitol operon repressor n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY67_COMTE Length = 166 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 16/129 (12%) Query: 13 NRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 L +++ QA +T R + LL + ++ L+ Sbjct: 4 EDLEYFSGFLKEFQA------------ETDRGAALVGAALLDKQLHDLLRSHLLDK---- 47 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K ++E L G PLG S R+K Y LG+I E+ + +L+ +R E H + F ++ Sbjct: 48 KESLELLEGGSAPLGTFSARIKASYCLGLITDLEHRELQLIRKVRNEFAHQTHGLTFQNE 107 Query: 133 EILGPFGEL 141 +I G L Sbjct: 108 KIASLCGNL 116 >UniRef50_A9L6C3 Putative uncharacterized protein n=1 Tax=Shewanella baltica OS195 RepID=A9L6C3_SHEB9 Length = 189 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 20/142 (14%) Query: 19 QATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVN-----LLVLQVFRKDD-YAV 72 + + + F +LE ++ R ++ AV ++ + + L+ + + D+ + + Sbjct: 3 DSLTKTFKEFMEIILE-----ESDRGSVLVAVSMIEDVLGCLLKARLLPSLDKNDELFDI 57 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 YA P G S ++ L Y +G IN+ + +L +R + H N F+ Sbjct: 58 GYA---------PFGTFSAKIDLAYRVGCINQHTRQSCHILRKIRNDFAHATNIKGFSHS 108 Query: 133 EILGPFGELHCVAALPPPPQFE 154 +L + + E Sbjct: 109 CTQDRIKDLFSLNKVLVSSYEE 130 >UniRef50_A6GLI2 Probable mannitol operon repressor n=1 Tax=Limnobacter sp. MED105 RepID=A6GLI2_9BURK Length = 181 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 G+T R + A + + L + + A E L GPL S R+ L Sbjct: 36 GETDRGAAVIAAGFVDNYLGLYLRSLAVDSKVA-----EELFQSMGPLSSFSQRITLARA 90 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAA 146 G I++Q+YED L+ +R H + F E+ +L Sbjct: 91 FGFISKQDYEDLTLIRKIRNHFAHHPLDTTFGIQEVSKLSIKLSDFKT 138 >UniRef50_C6P3A3 Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3A3_9PROT Length = 183 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 RS + L + +L+L+ K D A + LL PLG S ++K+ + Sbjct: 24 NADDRSCALLGAAYLDHCLEILLLRALVKCD-----ATDNLLGETNPLGTFSAKIKIAFS 78 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 L +I ++D E++ +R H N +F+ D I L Sbjct: 79 LNLIPLVIFQDLEVIRKIRNAFAHQLNGLSFSCDPIKSLARGL 121 >UniRef50_D0YDH1 Putative uncharacterized protein n=1 Tax=Klebsiella variicola At-22 RepID=D0YDH1_KLEVA Length = 181 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 27 AFENRVLERLNA--GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDG-D 83 AF +V E ++ ++ R ++ A ++ E + L+ + + L G Sbjct: 10 AFSQKVREIIDMLWPESDRGCVLVASSMIEEGLLELISSFL----LPPTNSKDELFHGPA 65 Query: 84 GPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELH 142 PL L R+ + Y LG+I + + + LR E H F L E++ Sbjct: 66 APLSSLESRIAMAYRLGLITKSVAKSLGVFRKLRNEFAHRIETVNFDSPSALNRLNEIY 124 >UniRef50_C8TP86 Putative uncharacterized protein n=1 Tax=Escherichia coli O26:H11 str. 11368 RepID=C8TP86_ECO26 Length = 279 Score = 97.9 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 19/130 (14%) Query: 13 NRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAV 72 N L+ + ++ R +++ +A+ ++L F D+ A Sbjct: 8 NDLNKLNGYLDSL---------------DERGLILSLAAFSEDALGKMLLT-FMLDNKAS 51 Query: 73 KYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDD 132 K +E + PLG S R+K + LG+I +Y+D ELL +R + +H + D Sbjct: 52 KELIE---GFNAPLGTFSSRIKACFSLGLITEGQYKDLELLRKIRNKFSHSWENISIEDQ 108 Query: 133 EILGPFGELH 142 +I L Sbjct: 109 DISQQIKALS 118 >UniRef50_A6CG94 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG94_9PLAN Length = 220 Score = 92.5 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 15/110 (13%) Query: 29 ENRVLERLNA--------GKTVRSFLITAVELLTEAVNLLVLQVFR-------KDDYAVK 73 + LE LN ++ R ++ A + EA+ L+ QVF D +A + Sbjct: 12 RQKWLEDLNEEFRYEIVLNESDRGAVLVASAFVEEALEHLLRQVFTVKSCNTSDDKFASQ 71 Query: 74 YAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHD 123 D PLG S R+ L Y LG+I+ E L LR H Sbjct: 72 LNRLTKSGIDAPLGSFSSRITLAYVLGIIDVDYLTALEALRNLRNSYAHR 121 >UniRef50_C7BGG4 Putative uncharacterized protein n=1 Tax=Burkholderia phage KS9 RepID=C7BGG4_9CAUD Length = 191 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 5/126 (3%) Query: 16 SDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYA 75 + + + L+ L ++ RS +I L E + L+L+V + A Sbjct: 4 NKKNKLPDPSVERSAEFLQWL-LNESERSAVILGGALADEELLALMLKVMPSPNKAE--- 59 Query: 76 VEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEIL 135 + L + + PLG S R+ L + +G+I+ + LR H TDD Sbjct: 60 -DRLFEPERPLGSFSSRITLAHRIGLIDDDFARGLNWVRDLRNHFAHRVEHAKLTDDAYR 118 Query: 136 GPFGEL 141 + Sbjct: 119 DRVTNI 124 >UniRef50_Q0VKY8 (ribF) n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VKY8_ALCBS Length = 190 Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 30 NRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDL 89 + E ++ ++ R +I A +L E++ ++ + L PLG Sbjct: 14 SDYYELISE-ESDRGAVIVAASILDESLGEILKTFLLR---PSTKKDNLLEGAYAPLGSF 69 Query: 90 SVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 S +++L + LG+I + + L ++R ++ H + + D++ E+ Sbjct: 70 SAKIELSFRLGIIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEI 121 >UniRef50_C6LMA4 Putative mannitol operon repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMA4_9FIRM Length = 131 Score = 72.4 bits (176), Expect = 8e-12, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 18 MQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVE 77 M +++ + V L K++RS +I L + L+ + ++ E Sbjct: 15 MGNFVDEFNMWMQAVQRELQE-KSMRSTIIICAATLDTQLEKLIKNILLQEKNTDDDIFE 73 Query: 78 PLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYA 128 G+ L S ++ L Y +G+I+ E + + + +R + H+ + + Sbjct: 74 ---GGNATLSTFSAKITLAYYMGLISEHERKTLDCIRKIRNKAAHEIDILS 121 >UniRef50_Q89U28 Bll1591 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89U28_BRAJA Length = 199 Score = 69.0 bits (167), Expect = 8e-11, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%) Query: 40 KTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP-LGDLSVRLKLIYG 98 ++ R + L A+ L++ A A L G P LG S ++ L Sbjct: 28 ESERGMAVLVGAELDRALELVLCAYL-----APGKARTELFAGSSPPLGTFSGKINLCRA 82 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHC 143 L +IN E + +R E HD + +F + +I L Sbjct: 83 LHLINEDECTALHTIRKIRNEFAHDP-DASFANAQIRSWVDILRS 126 >UniRef50_Q31PC2 Putative uncharacterized protein n=2 Tax=Synechococcus elongatus RepID=Q31PC2_SYNE7 Length = 182 Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 8/159 (5%) Query: 38 AGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIY 97 + R ++ L A+ L+ V + + L D LG + ++ L Sbjct: 22 MAERGRGVVLVGAARLDLALERLLQSVMA----PLGDEEDVLFTPDRSLGSFAAKITLAA 77 Query: 98 GLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA--ALPPPPQFEP 155 LG+++ + + A+R + H ++ ++ + + A P + Sbjct: 78 RLGLLDPTVEKALHGIRAVRNDFAHSASDTNLSEARHQKRLAKSYQAARRNPLWLPLEQV 137 Query: 156 ADSSLYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQ 194 D A+ + + T++ + + + + F+ Sbjct: 138 FDEHNVAIGTSDREFILLVTILAAFIDACTSLQ--TPFR 174 >UniRef50_A9DSJ7 Probable mannitol operon repressor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DSJ7_9RHOB Length = 178 Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 7/126 (5%) Query: 16 SDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYA 75 +D+ ++ T E + ++ R + + L + + + + A + Sbjct: 4 ADLNTYID-TLYSEKENFWKSTEQESDRGLALVCMAYLEGKLEDCLFEYMDRSPEARE-- 60 Query: 76 VEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEIL 135 LL GPLG + R+ + L +I+R + +R E H F D + Sbjct: 61 ---LLKPSGPLGTMVARINMCICLKIIHRNTGRMLRVAAKIRNEFAHTFQA-TFDDSPVK 116 Query: 136 GPFGEL 141 L Sbjct: 117 ELSISL 122 >UniRef50_A1VTT5 Putative uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTT5_POLNA Length = 265 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 17 DMQATMEQTQAFENRV--LERLNA---GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYA 71 ++ +EQ FE V E++ + R + A + + + + Sbjct: 54 RVKEFVEQASPFEAEVTLFEQIAGLVVSEEARVIPVIAAAYADDRLEEMFKREIPD---G 110 Query: 72 VKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGN 125 V L+ G GPL LS RL++ + G +++ + + + +R +L+H + Sbjct: 111 VPGGRSALMSGFGPLARLSQRLQMAFAFGWLSKDLLIEFDHIRKIRNDLSHKWD 164 >UniRef50_C6E2D1 Putative uncharacterized protein n=1 Tax=Geobacter sp. M21 RepID=C6E2D1_GEOSM Length = 199 Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 41 TVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLG 100 T R I A +L + L+ D + + DG P G R++L G Sbjct: 27 TRRELAIVAAGVLDLGLAQLLSMRLAGSDREREEFLGLNGDGRAPAGSFGARIQLGVLTG 86 Query: 101 VINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGEL 141 I + + ++ +R H FT +IL +L Sbjct: 87 TITSDDADILRIIKNIRNCFAHRVR-VDFTSPDILPLTSKL 126 >UniRef50_B3T2N2 Putative uncharacterized protein n=2 Tax=environmental samples RepID=B3T2N2_9ARCH Length = 142 Score = 46.2 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 26 QAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGP 85 ++ N L+++ R I + ++ ++ + F + K L + Sbjct: 3 KSLSNSDLKKILETTNERDLFIVGHMYIENTIDRILEEKF---NIPSKSIDSTLFTSN-- 57 Query: 86 LGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVA 145 +++ ++ G+I + ++ ELL +R H + I+ EL + Sbjct: 58 -----LKMDILTESGLIKDKVKKNVELLSRIRNRYAHKLEP---NEQRIVNYIRELDYIG 109 Query: 146 ALPPP 150 + P Sbjct: 110 SAPKS 114 >UniRef50_Q7NDP9 Glr4184 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NDP9_GLOVI Length = 249 Score = 46.2 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 31 RVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLS 90 + ++L + R I ++ + ++ ++ K + S Sbjct: 36 ELYKKLQGLQDHRLLAIVTALVVEDRIDKILEAFLPKYSKLKENDF-----------AFS 84 Query: 91 VRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAAL--P 148 ++ L+ L + + A L +R E H+ ++ +F D ++ +H + Sbjct: 85 AKVNLLESLNFVPPRLTTAAHCLRKIRNEFAHNLSKVSFLDLDLRLVRSMVHQANEIERD 144 Query: 149 PPPQFEPADS 158 PQ + Sbjct: 145 FSPQITNLND 154 >UniRef50_B4W0U6 Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W0U6_9CYAN Length = 239 Score = 43.6 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 8/137 (5%) Query: 10 RPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVFRKDD 69 RP ++ +++ E E L G+ SF+I L+ AV L++ + + Sbjct: 10 RPTEPFEAVEELVKELGLPEGFYAELL--GEDDWSFIIKLHALMEAAVTGLIVAALGQKE 67 Query: 70 YAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHDGNEYAF 129 + L + + ++ + L ++ L +R E HD + Sbjct: 68 LHNLISRLELSNKT------TGKMAFVKALSLLEDDYRRFIVTLSQIRNEFVHDVSNVGM 121 Query: 130 TDDEILGPFGELHCVAA 146 + E + +L V Sbjct: 122 SLKEYIAQSNKLDSVTK 138 >UniRef50_A6GX45 Putative uncharacterized protein n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GX45_FLAPJ Length = 190 Score = 40.9 bits (94), Expect = 0.022, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 43 RSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI 102 RS +I + + ++L F + ++ L+ +G + ++K++ L +I Sbjct: 27 RSHVIVTINQFENYCSHILLSYFSPKEDKEYDFMKVLM--NGSIIGFGAKVKVLRSLSII 84 Query: 103 NRQEYEDAELLMALREELNHDGNEYAFTDDE 133 + E+ L +R H + T+D Sbjct: 85 DEDEFSQLMQLANIRNGFAHSLHFENLTEDC 115 >UniRef50_C9QKA1 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QKA1_VIBOR Length = 166 Score = 40.9 bits (94), Expect = 0.026, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 13/117 (11%) Query: 39 GKTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYG 98 + +I A L + V+ V V DY K ++ S +LKL Sbjct: 11 NEDELGAVIRAHMALEQDVDRFVSLVATNSDYIQKMQID-----------FSNKLKLAVA 59 Query: 99 LGVINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEP 155 G+ + + Y+ + +R + H + + E+ + Sbjct: 60 FGL-DEEIYKPLVSVTNIRNKFAHRA-DMQLSKSEVNNFYKSFTSEDQALIQEVISS 114 >UniRef50_Q1VCG4 Putative uncharacterized protein n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1VCG4_VIBAL Length = 206 Score = 40.9 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 6 QDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNLLVLQVF 65 ++ ++P+ + ++ ++ F N+V E + + ++ L T ++ L+ ++ Sbjct: 39 ENGMKPDIPVCEIPPEYQEFSKFINKVNE-----ENAKKSYLSVGILWTSKLDALITELL 93 Query: 66 R--KDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVINRQEYEDAELLMALREELNHD 123 D Y K L ++ LG++ E + L +R +L H+ Sbjct: 94 SVYYDKYPEKKKKSN---------SLFEKVNRCVELGLLENLMKERFDSLRVVRNKLAHE 144 Query: 124 GNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSLY 161 + + D E+ L+ + E D L Sbjct: 145 W-DLSINDAELKNALHALYLLDHGQLFEFIEDIDFLLQ 181 >UniRef50_A5FDX1 Putative uncharacterized protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FDX1_FLAJ1 Length = 209 Score = 40.1 bits (92), Expect = 0.038, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 40 KTVRSFLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGL 99 +T R+ +I E ++ L+ + D + + ++ L+ L Sbjct: 2 ETTRAKVIERAVGFEELISQLLSMLLEVDKNESRS-----FGHKNIALSFNAKINLLIDL 56 Query: 100 GVINRQEYEDAELLMALREELNH 122 I ++ +D +L +R + H Sbjct: 57 KFIPKEISKDFQLFAEIRNKFAH 79 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.130 0.308 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 869,538,536 Number of Sequences: 3077464 Number of extensions: 29027071 Number of successful extensions: 93729 Number of sequences better than 1.0e-01: 42 Number of HSP's better than 0.1 without gapping: 73 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 93609 Number of HSP's gapped (non-prelim): 90 length of query: 195 length of database: 1,040,396,356 effective HSP length: 122 effective length of query: 73 effective length of database: 664,945,748 effective search space: 48541039604 effective search space used: 48541039604 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 89 (38.9 bits)