BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (375 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82... 442 e-122 UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=17... 432 e-119 UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 374 e-102 UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Act... 369 e-101 UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 ... 355 2e-96 UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA ... 349 1e-94 UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococ... 348 2e-94 UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 334 3e-90 UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 ... 291 4e-77 UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax... 287 4e-76 UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase ... 280 7e-74 UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-... 278 3e-73 UniRef50_C5C7F2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 249 1e-64 UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 238 4e-61 UniRef50_C2BW20 23S rRNA methyluridine methyltransferase n=1 Tax... 222 2e-56 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 180 6e-44 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 171 5e-41 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 168 3e-40 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 165 2e-39 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 156 1e-36 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 152 1e-35 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 150 9e-35 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 148 3e-34 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 147 5e-34 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 146 1e-33 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 143 9e-33 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 141 4e-32 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 140 5e-32 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 140 1e-31 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 139 1e-31 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 139 1e-31 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 139 2e-31 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 139 2e-31 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 139 2e-31 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 139 2e-31 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 139 2e-31 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 138 3e-31 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 137 9e-31 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 137 9e-31 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 134 4e-30 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 133 9e-30 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 133 1e-29 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 132 2e-29 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 132 2e-29 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 132 3e-29 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 132 3e-29 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 131 4e-29 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 131 4e-29 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 131 4e-29 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 131 4e-29 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 131 5e-29 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 130 6e-29 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 130 6e-29 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 130 8e-29 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 129 1e-28 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 129 1e-28 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 129 2e-28 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 128 3e-28 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 128 3e-28 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 127 6e-28 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 127 6e-28 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 127 8e-28 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 127 8e-28 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 127 8e-28 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 127 8e-28 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 126 1e-27 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 125 2e-27 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 125 2e-27 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 125 2e-27 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 125 3e-27 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 125 3e-27 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 125 4e-27 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 124 4e-27 UniRef50_C7H6V0 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 124 4e-27 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 124 5e-27 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 124 5e-27 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 124 5e-27 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 124 7e-27 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 124 8e-27 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 124 8e-27 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 124 8e-27 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 123 1e-26 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 123 1e-26 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 123 1e-26 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 122 2e-26 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 122 3e-26 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 122 3e-26 UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Corio... 121 3e-26 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 120 6e-26 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 120 7e-26 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 120 7e-26 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 120 1e-25 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 120 1e-25 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 119 1e-25 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 119 1e-25 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 119 2e-25 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 119 2e-25 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 119 2e-25 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 119 2e-25 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 119 2e-25 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 118 3e-25 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 118 3e-25 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 118 4e-25 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 118 5e-25 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 117 6e-25 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 117 6e-25 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 117 7e-25 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 117 7e-25 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 117 9e-25 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 116 1e-24 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 116 1e-24 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 115 2e-24 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 115 2e-24 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 115 2e-24 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 115 2e-24 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 115 2e-24 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 115 2e-24 UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopo... 115 3e-24 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 115 3e-24 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 115 4e-24 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 114 6e-24 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 114 6e-24 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 114 8e-24 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 113 1e-23 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 113 1e-23 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 113 1e-23 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 113 1e-23 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 112 2e-23 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 112 2e-23 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 112 2e-23 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 112 2e-23 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 112 3e-23 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 111 3e-23 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 111 4e-23 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 111 4e-23 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 111 5e-23 UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 111 5e-23 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 110 6e-23 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 110 7e-23 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 110 8e-23 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 110 9e-23 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 110 9e-23 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 110 1e-22 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 109 1e-22 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 108 2e-22 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 108 4e-22 UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lenti... 108 4e-22 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 108 4e-22 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 108 5e-22 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 108 5e-22 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 107 5e-22 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 107 6e-22 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 107 6e-22 UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexa... 107 6e-22 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 107 8e-22 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 107 9e-22 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 107 9e-22 UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collins... 106 1e-21 UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribac... 105 2e-21 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 105 3e-21 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 105 4e-21 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 104 4e-21 UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 104 5e-21 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 104 6e-21 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 103 7e-21 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 103 1e-20 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 103 2e-20 UniRef50_A7JSH2 Possible tRNA methyltransferase (Fragment) n=1 T... 102 2e-20 UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacr... 102 2e-20 UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna R... 102 2e-20 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 101 4e-20 UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 101 4e-20 UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 100 6e-20 UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaer... 100 9e-20 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 100 9e-20 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 100 1e-19 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 100 1e-19 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 100 1e-19 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 100 1e-19 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 100 2e-19 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 99 2e-19 UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8... 99 2e-19 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 99 3e-19 UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Lepto... 99 3e-19 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 99 3e-19 UniRef50_Q6M9M7 Uncharacterized RNA methyltransferase pc1998 n=1... 98 4e-19 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 98 4e-19 UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopob... 98 4e-19 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 98 6e-19 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 98 6e-19 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 97 7e-19 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 97 9e-19 UniRef50_D1J8P5 Putative uncharacterized protein n=1 Tax=Mycopla... 97 1e-18 UniRef50_D0LWB0 (Uracil-5)-methyltransferase n=1 Tax=Haliangium ... 97 1e-18 UniRef50_B6KDA8 tRNA (Uracil-5-)-methyltransferase domain-contai... 96 2e-18 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 96 2e-18 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 96 3e-18 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 95 4e-18 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 95 4e-18 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 95 4e-18 UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilag... 95 5e-18 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 94 6e-18 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 94 8e-18 UniRef50_B0S8Y5 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Lepto... 94 1e-17 UniRef50_D0P3V9 RNA methyltransferase n=2 Tax=Phytophthora infes... 93 1e-17 UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 ... 93 1e-17 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 93 2e-17 UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1... 93 2e-17 UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 92 2e-17 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 92 4e-17 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 92 4e-17 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 92 5e-17 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 92 5e-17 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 91 5e-17 UniRef50_Q6KHE2 Uncharacterized RNA methyltransferase MMOB5020 n... 91 6e-17 UniRef50_Q4A6T9 Putative tRNA (Uracil-5-)-methyltransferase n=2 ... 91 6e-17 UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lenti... 91 8e-17 UniRef50_Q72IZ3 Uncharacterized RNA methyltransferase TT_C0988 n... 91 9e-17 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 90 1e-16 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 90 1e-16 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 90 1e-16 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 90 2e-16 UniRef50_C6LFU0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 89 2e-16 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 89 3e-16 UniRef50_C8VQ78 tRNA methyltransferase (Eurofung) n=8 Tax=Euroti... 89 3e-16 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 89 3e-16 UniRef50_B0DKW8 Predicted protein (Fragment) n=5 Tax=Agaricomyce... 89 4e-16 UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitu... 89 4e-16 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 88 4e-16 UniRef50_Q1IXG2 (Uracil-5)-methyltransferase n=3 Tax=Deinococcus... 88 5e-16 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 88 5e-16 UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protei... 88 5e-16 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 88 5e-16 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 88 5e-16 UniRef50_Q6C110 YALI0F20196p n=1 Tax=Yarrowia lipolytica RepID=Q... 87 7e-16 UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nauti... 87 8e-16 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 87 8e-16 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 87 8e-16 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 87 8e-16 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 87 1e-15 UniRef50_B5RUJ7 DEHA2F20042p n=3 Tax=Saccharomycetaceae RepID=B5... 87 1e-15 UniRef50_C5PD16 tRNA-methyltransferase family protein n=2 Tax=Co... 87 1e-15 UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n... 87 1e-15 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 86 2e-15 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 86 2e-15 UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax... 86 2e-15 UniRef50_B6HIY5 Pc21g06420 protein n=11 Tax=Leotiomyceta RepID=B... 86 3e-15 UniRef50_B3L5E5 Putative uncharacterized protein n=2 Tax=Plasmod... 86 3e-15 UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfo... 85 4e-15 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 85 4e-15 >UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82 Tax=Gammaproteobacteria RepID=RUMB_HAEI8 Length = 392 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/388 (55%), Positives = 277/388 (71%), Gaps = 13/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNK 58 + C Y CRSCQW+ P +QL+ K LK L + +W AP EQ FRNK Sbjct: 2 IDCRYYQQNECRSCQWLEIPYSQQLAEKQHHLKQQLISINCDKAQWLAPFQSNEQCFRNK 61 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 AKM+VSGSVE+P+LG+L P+ DLCDCPLYPA F+ +F+ LK FI RAGL PYN+ Sbjct: 62 AKMLVSGSVERPILGILKNPNDPQSAIDLCDCPLYPARFSIIFSILKDFIGRAGLVPYNI 121 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 A+++GELKYILLTES + G +MLRFVLR++ KL +R+ LP L E+LP L+V++VN+QP+ Sbjct: 122 AKQKGELKYILLTESIATGKLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVVSVNLQPL 181 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 H AI+EGE EI+LTEQQ L E FN +PL+IRPQ FFQTNP VA LYATA+ WV +LP+ Sbjct: 182 HAAILEGEQEIFLTEQQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWVSELPIY 241 Query: 236 HMWDLFCGVGGFGLHCAT-------PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 ++WDLFCGVGGFGLHCA ++LTGIEI+S AI A SA LGL + FQ+L Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSL 301 Query: 289 DSTQFATAQG-DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 D+ + + P+LV+VNPPRRGIGK L ++L+ + P FI+YSSCNA TM KD++ L Sbjct: 302 DAASVIENKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT 361 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ ++QLFDMFP T+HYEVL LL ++ Sbjct: 362 CYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=170 Tax=Gammaproteobacteria RepID=RUMB_SHESW Length = 389 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/378 (54%), Positives = 271/378 (71%), Gaps = 5/378 (1%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNK 58 QC ++ G+C+SC+ I P+ +QL AK+ +L+ LL F + PV+G FRNK Sbjct: 11 QCGYFNRGQCQSCRHIQVPMAQQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNK 70 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 AKMVV G+ P+LG++ G LCDC LYP+ + L F+ +AG+ PY V + Sbjct: 71 AKMVVLGAAHAPVLGIVSPSGEAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKA 130 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +GELK+ILLT SQ G +LRFVLRS + ++ +ALP L + PQ+ V++VNIQP+HMA Sbjct: 131 KGELKFILLTRSQVRGEYLLRFVLRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMA 190 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 I+EG+ EI+LTE L ERFNDVPL+IRP+SFFQTNP VA+QLY TAR+WV + K +W Sbjct: 191 ILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLW 250 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DLFCGVGGFGLHCAT D+ LTGIEI +EAI+CA+ SA +GL ++QF ALDST FA + Sbjct: 251 DLFCGVGGFGLHCATKDIALTGIEIEAEAISCAQISANLMGLEKVQFMALDSTDFAQGKN 310 Query: 299 --DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQL 356 D P+L++VNPPRRGIG+ LC LS APR I+YSSCN +T+AKD+ + G+ + +VQL Sbjct: 311 AADKPDLIIVNPPRRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHIQGYHLTKVQL 370 Query: 357 FDMFPHTAHYEVLTLLVK 374 FD+FPHT H+EVL +LVK Sbjct: 371 FDLFPHTDHFEVLAMLVK 388 >UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C7R2N2_JONDD Length = 382 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/380 (48%), Positives = 249/380 (65%), Gaps = 8/380 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC +DA RCRSC + P QL+ K AD+ LL ++P +W PV+ + GFRNKAK Sbjct: 1 MQCHHFDAHRCRSCALLDIPYERQLATKAADVHALLGEYPDLDWLPPVASAQAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 M VSG+ + P+LG+L DL DCPLY V A++ FI A + PY VA +RG Sbjct: 61 MAVSGTADNPILGILDASFGGVDLRDCPLYTQGMQEVLDAVRAFIMAARIEPYRVADRRG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP-WLHEQLPQLKVITVNIQPVHMAI 179 ELKY+L+TES D M+RFV RS + ++ K LP WL E PQ++V+TVN+QP H AI Sbjct: 121 ELKYVLVTES-PDSEYMVRFVARSQEPVTRISKHLPGWLAEN-PQVRVVTVNLQPEHKAI 178 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI LT+ +L R D+PL++RPQSFFQTN VA+ LY A W+ +H+WD Sbjct: 179 LEGDREIVLTKDNSLTMRVGDIPLYLRPQSFFQTNTPVAAHLYRQAEQWIADARPQHVWD 238 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG- 298 LFCGVGGF LH A ++TG+EI++EAI A+ SAAE LT + F ALD+T F+T Sbjct: 239 LFCGVGGFALHAAPHANRVTGVEISAEAIESARTSAAERALTNVTFDALDATTFSTGHSA 298 Query: 299 ----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERV 354 P+LV+VNPPRRGIG L ++L+ ++YSSCNA+++AKD+ +P F+ R Sbjct: 299 RLADGGPDLVVVNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQPTRA 358 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 +LFDMFPHT H E + L+ K Sbjct: 359 RLFDMFPHTNHVETVVLMSK 378 >UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Actinomycetales RepID=C1RQ79_9CELL Length = 374 Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust. Identities = 182/375 (48%), Positives = 246/375 (65%), Gaps = 1/375 (0%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+C +DAG CRSC + QP PEQL+A+ ++ +L D P W V+ GFRNKAK Sbjct: 1 MRCGYFDAGVCRSCTLLAQPYPEQLAAQERHVRAVLGDPPGVTWLPTVTSAAAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 MVV+G+VE P LG+L G DL CPLYP + + F+ L F+ RA LTPY+V + G Sbjct: 61 MVVAGTVEAPTLGILDGHGHGVDLQGCPLYPPAVSAAFSPLADFVTRARLTPYDVPTRTG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++L+T S DG +M+RFVLRS LA++RK LP L LP L V +VN+QP H A++ Sbjct: 121 ELKHVLVTGS-PDGELMVRFVLRSTEALARIRKHLPRLQTDLPHLVVASVNVQPAHAAVL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EGE EI LT ++ L N + L +RP+SFFQTN VA+ LY A W + V WDL Sbjct: 180 EGEREIPLTARETLRMHVNGLDLHLRPRSFFQTNTEVAAALYRQALAWADEAAVTSAWDL 239 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300 +CGVGGF LH A Q+ G+E ++EA+ A+ +A + GL +F A D+T FA DV Sbjct: 240 YCGVGGFALHLARAGRQVVGVEASAEAVVSAELTARDAGLPGTRFVAGDATAFALDATDV 299 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+LV+VNPPRRG+G+PL +L ++YSSC+A ++A+D+ +P R+ R Q+ DMF Sbjct: 300 PDLVVVNPPRRGLGEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSLRLVRAQVLDMF 359 Query: 361 PHTAHYEVLTLLVKQ 375 PHTAH+EVLTLL + Sbjct: 360 PHTAHHEVLTLLERS 374 >UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 Tax=Bacteria RepID=D1BRN3_XYLCX Length = 411 Score = 355 bits (910), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 191/412 (46%), Positives = 255/412 (61%), Gaps = 38/412 (9%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQGFRNKA 59 MQC YDAGRCRSC + P Q++ K ++ LL F P W PV+ E GFRNKA Sbjct: 1 MQCHHYDAGRCRSCTLLDVAYPVQVADKERHVRGLLEPFAPDAAWLPPVTSAEGGFRNKA 60 Query: 60 KMVVSGSVEKPLLGML-----------HRDGTPEDLCDCPLYPASFAPVFAALKPFIARA 108 KMVV+G+VE+P++G++ HR T DL DCPLYP + F L + RA Sbjct: 61 KMVVTGTVEEPVIGIVGALPQGYDRVGHRGPTGVDLTDCPLYPPTLQDAFGPLAELVTRA 120 Query: 109 GLTPYNV-----------ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW 157 L PY++ A RGELK++++T S + G +M+R VLRS +A+LRK LPW Sbjct: 121 RLQPYDLTPSRGRVTPRDAAGRGELKHLIVTVSPA-GALMVRLVLRSQEPVARLRKHLPW 179 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAE----RFNDVPLWIRPQSFFQT 213 L LP L V++VN+QP H A++EGE EI LTE++ L R + L +RPQSFFQT Sbjct: 180 LQTALPNLAVLSVNLQPEHKAVLEGEREIVLTERETLPMTLPVRPGGLTLHLRPQSFFQT 239 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N VA+ LY A W+ + +WDL+CGVGGF L CA P +TGIEI++EA+A A+ Sbjct: 240 NTDVAAALYRQAAQWIDDVAPASLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQV 299 Query: 274 SAAEL--------GLTRLQFQALDSTQFATA--QGDVPELVLVNPPRRGIGKPLCDYLST 323 + AEL + ++F A D+T FA DVPELV+VNPPRRGIG L D+L + Sbjct: 300 TRAELEATDGGPAAMAGVRFAAGDATAFALGCDPADVPELVIVNPPRRGIGPALADWLES 359 Query: 324 MAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + R+++YSSCNA T+A+D+ +P R +V+L DMFP T HYEVLTLL + Sbjct: 360 SSARWVLYSSCNADTLARDLERMPSLRPAKVRLLDMFPQTRHYEVLTLLERH 411 >UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NR03_9MICC Length = 409 Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 173/377 (45%), Positives = 247/377 (65%), Gaps = 4/377 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA++P +W PV+ E GFRNKAK Sbjct: 33 MECAYFRDDLCSSCPRIETAYTAQVQAKQEHARALLANYPQLQWLDPVTSAEAGFRNKAK 92 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 93 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 152 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL E+LP L V++VN+ +A Sbjct: 153 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMGWLQERLPNLAVLSVNLLREPVAR 211 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 212 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 271 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 272 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVSS 331 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 332 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 391 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFPHT HYEV+TLL + Sbjct: 392 DMFPHTDHYEVMTLLKR 408 >UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococcaceae RepID=C6R4A2_9MICC Length = 377 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 174/378 (46%), Positives = 245/378 (64%), Gaps = 4/378 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA P +W PV+ E GFRNKAK Sbjct: 1 MECAYFRDDLCSSCPSIETAYTAQVQAKQEHARALLAAHPQLQWLDPVTSAEAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 61 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 120 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL EQLP L V++VN+ +A Sbjct: 121 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMDWLQEQLPNLAVLSVNLLREPVAR 179 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 180 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 239 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 240 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVSS 299 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 300 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 359 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT HYEV+ LL +Q Sbjct: 360 DMFPHTDHYEVMVLLQRQ 377 >UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Actinomycetales RepID=C5C2M0_BEUC1 Length = 376 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 184/377 (48%), Positives = 240/377 (63%), Gaps = 9/377 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC+ YDA CRSC I +P +QL+ K A + L W P E+ FRNKAK Sbjct: 1 MQCSYYDAALCRSCTLIERPYADQLAGKQAHARAALTGHDGVAWLPPHPSAEEQFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKP---FIARAGLTPYNVAR 117 MVV+GS P++G+L DG DL C L+ PV AAL P F+ARA L PY++ Sbjct: 61 MVVTGSAVDPVIGILGPDGEGVDLRWCGLHEP---PVTAALSPLAEFVARANLAPYDLRT 117 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +RGELKY+L+T S DG +M+RFVLRS LA++RK LP L E LP+L V +VN+QP H Sbjct: 118 RRGELKYLLVTAS-PDGEVMVRFVLRSTEALARIRKHLPALQEALPRLAVASVNVQPEHS 176 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 A++EG TEI LT Q L N + L +RPQSFFQTN AVA+ LY A DW+ +L + Sbjct: 177 AVLEGPTEIPLTPAQTLRMAVNGLDLHLRPQSFFQTNTAVAAALYREATDWIDELAPSSV 236 Query: 238 WDLFCGVGGFGLHCATPDMQ--LTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 DL+CGVG F LH A D + + G+E ++EAIA A SAA+ GL +F D+T FA Sbjct: 237 VDLYCGVGPFALHAAARDTERRVLGVETSAEAIASATHSAADAGLANARFAVGDATAFAA 296 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQ 355 VP++V+VNPPRRGIG L +L R ++YSSC++ ++A+D+ +P R R + Sbjct: 297 DDDGVPDVVIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSLRPVRAR 356 Query: 356 LFDMFPHTAHYEVLTLL 372 + DMFP TAHYEVLTLL Sbjct: 357 VLDMFPQTAHYEVLTLL 373 >UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLG7_9ACTO Length = 436 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 170/421 (40%), Positives = 231/421 (54%), Gaps = 53/421 (12%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL--------ADFPVEEWCAPVSGPE 52 M+C ++ C SC EQL+AK A ++ LL A P EW P + E Sbjct: 1 MRCRYLESDLCHSCTRANVAYAEQLAAKDASVRALLERSARANGAAAPDVEWNPPFASAE 60 Query: 53 QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +GFRNKAK+ V G++ P LG+L D D+ CPLY + A L+ FI AGLTP Sbjct: 61 KGFRNKAKLAVGGTLSNPTLGILGSDKRGIDIAGCPLYEPAVASGIEPLREFIGLAGLTP 120 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 ++V RGELK ++LT S DG +M+RFVLRS L ++RK + L + LP++ V++VN+ Sbjct: 121 FDVPSGRGELKSVILTGSP-DGELMVRFVLRSTESLVRIRKHMSLLRQWLPRIAVVSVNL 179 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV--- 229 P A++EGE EI L +Q+L DV L +RPQSFFQTN VA LY AR+WV Sbjct: 180 LPERKAVLEGEKEILLGPEQSLRMDLGDVALRLRPQSFFQTNTRVAVGLYRQAREWVGLL 239 Query: 230 --------------RQLPVK------------------------HMWDLFCGVGGFGLHC 251 R P +WDL+CGVGGF LHC Sbjct: 240 CDAEGGGSHDLEAKRAEPADSEAKGAKAKGAKPASSASAGGRSIELWDLYCGVGGFALHC 299 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 A P ++TG+E++++A+ A+ SAA G+ F DS A G ++V+VNPPRR Sbjct: 300 AGPGRRVTGVELSAQAVESARASAAAAGID-ADFIVGDSLSAARELG-TADVVVVNPPRR 357 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTL 371 GIG L ++ RF++YSSCN ++A D+ +P FR R ++FDMFPHT H E L L Sbjct: 358 GIGG-LASWIDASQIRFVLYSSCNPASLAADVASMPSFRPVRARVFDMFPHTGHTETLVL 416 Query: 372 L 372 L Sbjct: 417 L 417 >UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1I3_9ACTO Length = 396 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 224/377 (59%), Gaps = 6/377 (1%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C+ Y A +C SC I P +Q++ KTA +K+LL + W GFRNKAKMV Sbjct: 12 CSYYAAQQCLSCPQIEVPYEQQVAEKTARVKSLLPMIAEDAWLPTQESASVGFRNKAKMV 71 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 V+GS +LG+L D +DL +CPLY + +I G++PY+V +RGEL Sbjct: 72 VTGSAANAMLGILGSDYAGQDLTECPLYSQHMRDFLKTFQRWIRELGISPYSVKERRGEL 131 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 KYIL+TES DG ++R+VLRS +++LR + + E+ P++ V++ NI H+A+ EG Sbjct: 132 KYILVTES-PDGQFLVRWVLRSHRWVSRLRNFVSVMQEEFPEIAVVSANILAEHVALTEG 190 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 EI L L + V L + P+SFFQTN +A +Y A+ W L DLFC Sbjct: 191 PEEISLYGDY-LPFQLGRVKLQLLPRSFFQTNTFIAHAMYQQAQRWAIALKPDRAVDLFC 249 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP- 301 GVGGF L A +TG+E+++ AIA AK+ A GL + F A D+T F+ ++G + Sbjct: 250 GVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFSISEGGLQL 309 Query: 302 ---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFD 358 ++++VNPPRRGIG L ++++ R IIYSSCN ++AKD+ L ++ R ++FD Sbjct: 310 TRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKDMELLGSYKATRARVFD 369 Query: 359 MFPHTAHYEVLTLLVKQ 375 MFP T H EV+ LLVK+ Sbjct: 370 MFPGTDHAEVMVLLVKE 386 >UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D8B Length = 401 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 157/388 (40%), Positives = 220/388 (56%), Gaps = 15/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 + C ++AG CRSC +I P +Q++ K A +LA + W G ++ FRN+AK Sbjct: 16 LDCHYFNAGLCRSCTFIETPHRDQVADKEAWCVEVLAGHSPDAWLPAAVGLDRDFRNRAK 75 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + V GS LG+L +D DL +C + V + F+ GL PY+V +RG Sbjct: 76 LAVGGSAGSVTLGILDQDFHGVDLRECGIQAPQIRAVIPTIAHFLNGTGLAPYDVKARRG 135 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++ +T + S G +M RFV+RS L LR L LP VI+VN+ P H A++ Sbjct: 136 ELKFVHITAAPS-GDLMTRFVVRSQHGLDVLRSRGQELRALLPTATVISVNLLPEHKAVL 194 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG E L +L + V L +RPQSFFQTN VA LY WV ++ +WDL Sbjct: 195 EGSREEMLL-GDSLRMNLDRVDLHLRPQSFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDL 253 Query: 241 FCGVGGFGLHCATPDMQ-----LTGIEIASEAIACAKQSAAELGL-----TRLQFQALDS 290 +CGVGGF L+CA Q +TG+E++ +AI AK SA ELG ++F A D+ Sbjct: 254 YCGVGGFALYCAGTTGQQSPRRVTGVELSEQAIESAKISAVELGFDSQSGATVEFIADDA 313 Query: 291 TQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 T+FA A G+ P+ V+VNPPRRGIG L L I+YSSCN T+AKD+ ++P Sbjct: 314 TEFAEANLASGERPDCVIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMP 373 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + +ER ++FDMFPHT H EV +L ++ Sbjct: 374 SYTVERARVFDMFPHTKHLEVAVVLQRR 401 >UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase n=3 Tax=Actinomycetales RepID=C7NHZ3_KYTSD Length = 413 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 163/388 (42%), Positives = 224/388 (57%), Gaps = 17/388 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA-DFPVEEWCAPVSGPEQGFRNKA 59 + C + AGRC SC + P QL K A +++LLA P W AP++ +GFR KA Sbjct: 18 VHCHHFSAGRCGSCTLMGTPYRVQLQRKDAVVRDLLAAQVPATAWEAPLASVPEGFRTKA 77 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 K VVSGS P LG+L G DL DC L+ A V L F+ RA L PY++AR+R Sbjct: 78 KFVVSGSAAAPTLGILDEAGRGVDLRDCGLHVPELAAVADRLARFVTRAALPPYDLARRR 137 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK+++LT + S G +MLRFVLR++ L ++R+ LP L LPQL+V++ N+ P H A Sbjct: 138 GELKHLVLTAAPS-GDLMLRFVLRTEGPLPRIREHLPGLLADLPQLRVVSANLHPEHKAT 196 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE EI LTEQ L V L+ P +F QTN VA+ LY A W+ + + D Sbjct: 197 LSGEVEIALTEQTLLPLELPGVTLFAGPGAFVQTNTTVAAALYQQATAWLVDAGARRVAD 256 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAEL----GLTRLQFQALDSTQFA- 294 L+CGVGGF LH A + G+EIA++A+ A+ AA L G +F D++ A Sbjct: 257 LYCGVGGFALHAAAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVADASDPAA 316 Query: 295 --TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAP--------RFIIYSSCNAQTMAKDIR 344 A G + ++VNPPRRG+G L L +P R ++YSSCN T+A D+ Sbjct: 317 VLAAAGTDRDAMVVNPPRRGLGPDLPAMLDARSPAADPASALRTLVYSSCNPATLATDLA 376 Query: 345 ELPGFRIERVQLFDMFPHTAHYEVLTLL 372 LP +++ +LFDMFP+T H EV+ LL Sbjct: 377 GLPHWQVRSARLFDMFPNTDHAEVVVLL 404 >UniRef50_C5C7F2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C5C7F2_MICLC Length = 403 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 233/405 (57%), Gaps = 32/405 (7%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQGFRNK 58 MQC +D G CRSC + P QL+ K A ++ LAD + P + E GFRNK Sbjct: 1 MQCPHFDVGECRSCPLMGVPYARQLADKQAAVQAALADAVDADTVVAEPFASAEAGFRNK 60 Query: 59 AKMVVSGSVEKPLLGML-------HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 AK+VV+GS P LG+L H DG DL DC LY A VF A + AGL Sbjct: 61 AKLVVTGSAAAPRLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAGLE 120 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ----LKV 167 PY+VA + GELK +++T S D M+RFVLRS +L LR A+P L + L V Sbjct: 121 PYDVAARTGELKNVIVTLS-PDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAV 179 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 ++ N+ P H+A+ EG+ EI L L R N V L +RPQ FFQTN AV LYATA Sbjct: 180 VSANLLPEHVALPEGDKEIVLAGGPTLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAA 239 Query: 228 WVRQ--LPVKHMWDLFCGVGGFGLHCATPDMQ-LTGIEIASEAIACAKQSAAELGLT-RL 283 WV + LP WDL+CGVGGF H A ++ + G+E ++EA+A A+++AAELGL R Sbjct: 240 WVAEAGLPAT-AWDLYCGVGGFAFHLARAGVRDVWGMESSAEAVAAARETAAELGLADRA 298 Query: 284 QFQALDSTQFAT-------------AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 +F A D+T + + P+ V+VNPPRRGIG L D L ++ Sbjct: 299 RFSAGDATSALSFGKRRAPEALSFEKRRARPDAVVVNPPRRGIGAELADALEDSGVPTVL 358 Query: 331 YSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 YSSCN T+A+D+ +P +R+ RVQ+FDMFP T H EVLTLL ++ Sbjct: 359 YSSCNPATLAQDLARMPSYRVARVQVFDMFPQTRHAEVLTLLTRR 403 >UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Mobiluncus mulieris RepID=D0YVB6_9ACTO Length = 450 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 219/435 (50%), Gaps = 61/435 (14%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF--PVEEWCAPVSGPEQGFRNK 58 ++CA + G CRSC+ + Q +Q+ K + +L F P +W +P P+ GFRNK Sbjct: 17 VKCAYFSRGSCRSCELMGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNK 76 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 AKMV+SGS + LG+ P DL CPLYP S FA ++ ++ R G PY + Sbjct: 77 AKMVISGSKKTITLGLPPTPRHPHGVDLEKCPLYPESIRATFAPIRQWLLRLGARPYQID 136 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RGEL+++L++ + + G +M+R VLRS L ++ P L +LP L+V +VNIQP H Sbjct: 137 AHRGELRHVLVSANPA-GELMVRLVLRSKAALKRVENTWPDLARELPGLRVFSVNIQPEH 195 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 A+++G EI L+ Q+ L L++ P +FFQTN A A LY A +W +L Sbjct: 196 TALIDGPEEIVLSPQRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGL 255 Query: 237 MWDLFCGVGGFGLHCATP----------------DMQLTGIEIASEAIACAKQSA----- 275 +WDL+CGVGGFG A Q+ G+E+A AI AK +A Sbjct: 256 VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRA 315 Query: 276 ---------------------------------AELGLTRLQFQALDSTQFATAQGDV-- 300 ++ L+F D+ ++ Q + Sbjct: 316 TPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITADAGKWIKNQKKLVT 375 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+L++VNPPRRG+G L ++ +IYSSC ++ ++ + +R+ ++L DMF Sbjct: 376 PDLLVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKSYRVTELKLVDMF 435 Query: 361 PHTAHYEVLTLLVKQ 375 PHT H E + LL ++ Sbjct: 436 PHTRHVETIVLLSRK 450 >UniRef50_C2BW20 23S rRNA methyluridine methyltransferase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BW20_9ACTO Length = 342 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 28/341 (8%) Query: 61 MVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 MVVSGS + +LG+ + P DL CPLY + F ++ ++ R G PYN+ Sbjct: 1 MVVSGSKKSIVLGLAPNEKHPTGIDLQSCPLYAPAIHAAFTPIRAWLQRLGARPYNIPTA 60 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +GE+KY+L++ + + G +M+R VLRS L ++ L +LP L+V +VNIQP H Sbjct: 61 KGEVKYVLVSANPA-GDLMVRLVLRSKAALHRVEHTWSELQAELPNLRVFSVNIQPEHTT 119 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++EG EI L+ ++ + LW+ P +FFQTN A + LYA A W R+L + W Sbjct: 120 VIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQALYAQAATWARKLQPETAW 179 Query: 239 DLFCGVGGFGLHCATPDM-QLTGIEIASEAIACAKQSAAELGLT---------------- 281 DL+CGVGGF ++ + Q+TG+E+ AI AK + EL Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239 Query: 282 -------RLQFQALDSTQFATAQGDV-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSS 333 R F D+T++A Q + P+LV+VNPPRRG+G L +L +IYSS Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299 Query: 334 CNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 C T+ +D+R + ++I +L DMFPHT+H E + L+ + Sbjct: 300 CFPGTLVEDLRRMRSYQIRAAKLVDMFPHTSHVECVVLMSR 340 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 116/377 (30%), Positives = 193/377 (51%), Gaps = 17/377 (4%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQ--GFRNKAKMVVSGS 66 C+ C + +QL K ++ L +P + +P+ E+ G+R AK+ V+ Sbjct: 110 CQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAVARR 169 Query: 67 VEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + ++G L+R G+ E D+ CPL+ + ++ IAR + YN +RG L+Y Sbjct: 170 NGRIVIG-LYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTRRGLLRY 228 Query: 125 ILLTESQSDGGMMLRFVL--RSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +L+ S + G M+ FV R ++ L K W+ ++P++ + N+ ++ G Sbjct: 229 LLIKVSPATGKAMVTFVTAQREYKRITALAK---WVARKIPEVVSVQQNVNASSGNVIMG 285 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + + Q L ++ ++ L I P SFFQ N A A+++YA R W + DL+C Sbjct: 286 RETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYC 345 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FATAQGDVP 301 G+GG LH A ++ G+E+ +A+ A+Q+AA L +F A D+ + D+P Sbjct: 346 GIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDLIVDLP 405 Query: 302 EL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLF 357 L ++NPPR G + ++ + PR IIY SCN T+A+D+ EL G+R +Q Sbjct: 406 SLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKLGYRTAEIQPV 465 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP TAH E + LVK Sbjct: 466 DMFPQTAHVESVARLVK 482 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 15/380 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPEQ-GFRNKAKMVV 63 AG C C I+ P+QL+ K + + + E A + P Q +RN AK+VV Sbjct: 91 AGSCDGCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVV 150 Query: 64 SGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 SG+ +P++G+ R+ D+ CPL+ V A+K IA+ + YN G L Sbjct: 151 SGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLL 210 Query: 123 KYILLTESQSDGGMMLRFVL--RSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 +Y+++ S+ G M FV R+ ++ L K L Q+ + + + ++ Sbjct: 211 RYLVVRISERTGTAMAVFVTVERNYNEIHHLAKHLQQSVPQVEVVVQNVNSSEG---NVI 267 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 G+ + +LT Q AL E + I P+SFFQ N A +Y T R W + + DL Sbjct: 268 LGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDL 327 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQ 297 +CG+GG L A ++ GIE+ A+ A+ +A + F+A D+ + + Sbjct: 328 YCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEE 387 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 G+ +LV++NPPR+G + + ++ P I+Y SC T+A+D+ L G+ RVQ Sbjct: 388 GERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLGYATLRVQ 447 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMFP T H E + LLVK+ Sbjct: 448 PVDMFPQTPHVENIALLVKK 467 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 192/385 (49%), Gaps = 24/385 (6%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSA-KTADLKNLLADFPVEEWCAPVSGPEQ--GFRN 57 + C L C +W Q + QL A + D L P+ P + +R Sbjct: 113 LGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIEL----------HPLLSPRRLTNYRT 162 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ ++G +P +G+ R DLCDCP++ V ++ I+R + Y+ Sbjct: 163 TVRLTIAGKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPR 222 Query: 117 RKRGELKYILLTESQSDGGMMLRFVL--RSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 + G L+Y+++ S+++ M+ FV RS ++ L + ++ EQLP+++V+ N+ Sbjct: 223 NRVGLLRYLVVRVSEAEQKAMVVFVTARRSYNEIHHLAR---YVREQLPEVEVVAQNVNS 279 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ G + +LT + L ER +V L I P+SF Q N A +Y +W R Sbjct: 280 SEGNVIMGPVDHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGR 339 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST--- 291 + + DL+CG+GG L A ++ G+E+ A+ A+++A G++ FQA D Sbjct: 340 ETVLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAEQL 399 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 + G+ ++V++NPPR+G + + ++ + PR ++Y SC+ QT+A+D+ L G+ Sbjct: 400 EELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSLGY 459 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 VQ DMFPHT H E + L K Sbjct: 460 VCVEVQPVDMFPHTMHVENVARLEK 484 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNL------LADFPVEEWCAPVSGPEQ-- 53 +C +Y+ +C CQ QL AK ++++ L+D PV PV G + Sbjct: 78 ECPVYN--QCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVH----PVLGMKNPW 131 Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 +RNKA++ + G E L+ +R GT + ++ C + + +K + G++ Sbjct: 132 VYRNKAQVPI-GEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGIS 190 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 YN R +G L++++ Q G +ML F+ R+ +L + + + + P++K I N Sbjct: 191 AYNEERNKGTLRHVMARYGQVTGEIMLVFITRT-AELPNKKAIIEEIATKFPEVKSIVQN 249 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + P ++ G+ L + + + D+ I +SF+Q NP LY ++ + Sbjct: 250 VNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKL 309 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + + D +CG+G L A ++ G+EI EAI AK++AA +T +F ++ Sbjct: 310 DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAE 369 Query: 292 QFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--EL 346 +G + + ++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ E Sbjct: 370 VVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEE 429 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLL 372 G++ + VQ DMFPHT H E + L+ Sbjct: 430 GGYKTQEVQPVDMFPHTTHVECVVLM 455 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 162/336 (48%), Gaps = 17/336 (5%) Query: 52 EQGFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAG 109 E G+RNK + G + LG R + ++ CPL P A + A ++ + A Sbjct: 132 EYGYRNKMEFSFHGIGDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTN 191 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVIT 169 + Y R G + +++ S G MM+ + ++ L + +PQLK Sbjct: 192 IGAYRHNRG-GYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFV 250 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERF-----NDVPLWIRPQSFFQTNPAVASQLYAT 224 + + + GE I +T Q+ + E ++V I P +FFQTN A LY Sbjct: 251 HSTRKGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRK 310 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 + + +WDLFCG GG G+ A ++ GIE++ E++ AK +AA GL Q Sbjct: 311 SSELAAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQ 370 Query: 285 FQALDSTQFATAQG---DV--PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 + A+ +G D+ P++V+V+PPR G+ P L + P I+Y SCN T+ Sbjct: 371 YIV---GNLASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTL 427 Query: 340 AKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 A+D ++ G +++ER DMFPHTAH E + LL K Sbjct: 428 ARDAAKMEGRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 176/380 (46%), Gaps = 24/380 (6%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNL------LADFPVEEWCAPVSGPEQ--GFRNKAKM 61 C CQ QL K + N+ L PV P+ G E+ +RNK ++ Sbjct: 81 HCGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVH----PILGMEEPSHYRNKVQI 136 Query: 62 VVSGSVEKPLLGML----HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V + ++G HR +D C + + V + + + G+ Y+ Sbjct: 137 PVGEKNGEVIVGFYQKRSHRILQNQDTCH--IQDEAINEVLPFTRQLMNKYGIQAYDEKS 194 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 RG+L++I++ +M+ FV ++ +K + + + L EQ PQ+K I N+ Sbjct: 195 HRGQLRHIMVRVGHYTKDIMIVFVTKT-SKFPEKDRIIKELTEQFPQVKSIVQNVNDQRT 253 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ L + + ++ D+ I P+SFFQ NP LY A ++ + Sbjct: 254 NVVLGKKTKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVV 313 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D +CG+G L A ++ GIE+ EAI AK +A G+ ++F + + Sbjct: 314 IDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKW 373 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFRIE 352 QG P++++V+PPR+G + + M P+ I+Y SCN T+A+D+R E GF + Sbjct: 374 KEQGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILEDGGFETK 433 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 +VQ DMFP T H E + L Sbjct: 434 QVQPVDMFPSTNHVECVAEL 453 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 108/383 (28%), Positives = 188/383 (49%), Gaps = 26/383 (6%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLAD------FPVEEWCAPVSGPEQ--GFRNKAKM 61 +C C + +L AK +++ + FPV PV G + +RNKA++ Sbjct: 79 QCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPV----PPVVGAAKINRYRNKAQL 134 Query: 62 VVSGSVE-KPLLGML----HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + ++G HR ED CPL P FA A++K ++ + Y+ Sbjct: 135 PIGADRDGRGIMGFYALHSHRIVPIED---CPLQPKMFAQAVASVKQWMEEYKVPVYHEE 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G L+++ L E+ + G +M+ V D +L + + L E LP L+ + N Sbjct: 192 SHSGLLRHLYLREASATGALMVCLVGNGD-ELPHSGELVKRLREDLPCLESVVFNSNREK 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ L + + + + ++ P SF+Q N A LY A ++ Sbjct: 251 TNVILGKRCQALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDT 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQF 293 + DL+CG G G+ A+ ++ G+E+ EAI AK +A G+ ++F DS Q Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQM 370 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +G+ P +V+V+PPR+G G P+ +++ +APR IIY SC+ T+A+D++ L G+ + Sbjct: 371 LRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVKAGYCL 430 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + D+FP TAH E + LL K Sbjct: 431 QTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/383 (24%), Positives = 187/383 (48%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPEQ--GFRN 57 C +Y+ C CQ EQL+ K + + +EE P G E +RN Sbjct: 80 CPVYE--ECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRN 137 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K+++ V EK + G+ ++ D+ C + + ++ + + ++ YN Sbjct: 138 KSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEK 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +++G ++ I+ + G + + + + +L + + + +Q+P +K I N+ Sbjct: 198 KQKGLVRTIVTRTAVQTGEVQVTLITTKE-ELPNKEQFIAEVQKQMPAVKSIMQNVNWRK 256 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +++ G+ L ++ + E D+ + ++FFQ NP LY A+ + Sbjct: 257 TSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEK 316 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CGVG GL A ++ G+++ EAIA A+++A G T +++A + Q+ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352 +G P++++V+PPR G L + + + P+ ++Y SCN ++A+D++ L + +E Sbjct: 377 WVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVE 436 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFPHTAH E + LV++ Sbjct: 437 YVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 107/382 (28%), Positives = 178/382 (46%), Gaps = 26/382 (6%) Query: 8 AGRCRSCQWIMQPIPEQLSAK----------TADLKNLLADFPVEEWCAPVSGPEQ--GF 55 A +C CQW EQL+AK L N+ D PV E+ G+ Sbjct: 109 ADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVD--------PVLAAEEQLGY 160 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 RNKA + S K + ++ G+ +L CP+ P+ AA+K I Y Sbjct: 161 RNKATYPLGLSPTKDVKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIY 220 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + +G +K++ L + G +++ V RS TKL + + E+ P++ + VN+ Sbjct: 221 DERSHKGHIKHLALRIGRRTGQILVTLVSRS-TKLKGIHEQAQQWMERYPEVVGVLVNLN 279 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + G + L E+F ++ I+P +FFQ N A +L + + Sbjct: 280 WKKTNAIFGPETFLIAGSSYLEEKFANLTFHIQPATFFQVNTTQAERLLDEIQTELALTG 339 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + D +CGVG F L A Q G+E ++E++ A+++AA G+ + F+ D Sbjct: 340 DEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAAL 399 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR---ELPGFR 350 P+++L++PPR+G + + + + P+ I+Y SCN T+A+D+R E G+R Sbjct: 400 LPDLDVKPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGYR 459 Query: 351 IERVQLFDMFPHTAHYEVLTLL 372 + RVQ D FP TAH E L Sbjct: 460 VTRVQPADFFPQTAHVECAVFL 481 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/380 (27%), Positives = 180/380 (47%), Gaps = 24/380 (6%) Query: 8 AGRCRSCQWIMQPIPEQL---SAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMV 62 A +C CQ EQL K D+ +A VE V G E +RNK ++ Sbjct: 88 AKQCGGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVE--VLDVIGMENPTFYRNKGQIP 145 Query: 63 VSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 V G K ++ +R T D+ C + V +K + N + Sbjct: 146 V-GITNKQVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLL--------NKYQNAD 196 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 +++L+ ++ + G +M+ +++RS +KL+ + L E LP +K + +N+ ++ Sbjct: 197 LFRHLLIKDAFASGEVMVVWIVRS-SKLSHKEEMCKELVENLPYIKSVIINVNTREDNVI 255 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 G+ E L + + +D+ I +SF+Q NP +LY A ++ + + + DL Sbjct: 256 LGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDL 315 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---AQ 297 +CGVG + A + G+EI AI AK +A + + F D+ +A Q Sbjct: 316 YCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLEKQ 375 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 G P++V+V+PPR+G D + M P+ I+Y SC+ T+A+DI++L G+ + VQ Sbjct: 376 GKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQ 435 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMFP + H E + LL K+ Sbjct: 436 PVDMFPFSFHVESIVLLQKR 455 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 151/301 (50%), Gaps = 14/301 (4%) Query: 87 CPLYPASFAPVFAALKPFIARA---GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR 143 C L PA+F + + + A +TPYN G L+++ + + +M+ FV Sbjct: 116 CVLQPAAFGDILRHCEEELGTADFNAITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTA 175 Query: 144 SDTKLAQLRKALPWLHEQL----PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFN 199 D +RK L L L ++K + +N+ P ++ G+ + L + +A+ Sbjct: 176 KDNN--HIRKQLTDLGNTLIADTHEIKSVMLNVNPQKTNVILGKKTVCLIGKDTIADTLC 233 Query: 200 DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLT 259 VP+ + PQSF+Q N A A +L+A A+ + + DL+CG G GL A ++ Sbjct: 234 GVPVSLSPQSFYQVNTAQAEKLFAEAKRLAAPKKDELLLDLYCGAGAIGLSMADTVGKVI 293 Query: 260 GIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVNPPRRGIGKP 316 G+E+ +AI AK +A G++ +F A D+ + A A+G P++++++PPR+G Sbjct: 294 GVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTL 353 Query: 317 LCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D MAP I+ SCN T A+D L GF ++ ++ D FP T H E + L+ + Sbjct: 354 TLDACLEMAPSRIVMISCNPSTAARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSR 413 Query: 375 Q 375 Q Sbjct: 414 Q 414 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/376 (28%), Positives = 167/376 (44%), Gaps = 17/376 (4%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEK 69 RC C + + K L L D E+ S QG+RNK + SV+ Sbjct: 74 RCGGCIYQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRNKMEYTFGDSVKG 133 Query: 70 -PLLGMLHRDGT---PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 PL+ LH D DC + F + A++ + + + G L++ Sbjct: 134 GPLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHF 193 Query: 126 LLTESQSDGGMMLRFVLRSD----TKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 ++ +S SD M+ V SD + K + + + I NI A++ Sbjct: 194 IIRKSFSDDEYMINLVTTSDKFDVNDFVEFAKQID--NRIVSIYHTINDNISD---AVIV 248 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 + E+ L ++ L E+ N + I P SFFQ NPA A Q+Y A + L K+++DL+ Sbjct: 249 DKLEL-LHGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLY 307 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG G A + G+EI EA+ AK++A GLT +F D F + + Sbjct: 308 CGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFM-EKVEKK 366 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDM 359 ++V+++PPR GI D L + P IY SCN T D+ + G+ I+ ++ FD Sbjct: 367 DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLEFFDQ 426 Query: 360 FPHTAHYEVLTLLVKQ 375 FP T H E + LL ++ Sbjct: 427 FPRTYHCEAVVLLSRK 442 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 176/376 (46%), Gaps = 17/376 (4%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNKAKMVVSG 65 +C C ++ P EQL K + LL+DF C P+ G E +RNK + V Sbjct: 183 KCGGCHYLDLPYEEQLKIKQKQVSKLLSDF-----CKVHPILGMEHPYHYRNKVQAVFGR 237 Query: 66 SVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + ++ ++++GT + + C + + ++ + + Y+ G L+ Sbjct: 238 DAKGNIISGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLR 297 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 Y+L+ + G +M+ V+ S L + + L + P++ I +NI +++ G+ Sbjct: 298 YVLVKRGFTSGEIMVVLVIASPI-LPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGD 356 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 E L + + + I +SF+Q NP +LY A + + D +CG Sbjct: 357 RETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCG 416 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDV 300 +G GL + ++ G+E+ EAI A +A G+T F D+T+F A +G+ Sbjct: 417 IGTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAEKGEK 476 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFD 358 ++V+++PPR G + D + ++ P ++Y SCN T+ +D++ G++++ D Sbjct: 477 ADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVD 536 Query: 359 MFPHTAHYEVLTLLVK 374 MFP T H E + LL K Sbjct: 537 MFPWTGHVETVCLLYK 552 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/384 (28%), Positives = 174/384 (45%), Gaps = 16/384 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQ--GFRNK 58 +C L G C C + P EQL K A L+ LL F PV AP+ G E +RNK Sbjct: 34 RCPLEKRG-CGGCPMLSLPYEEQLKRKQAKLEELLGKFGPV----APILGMEHPWHYRNK 88 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + K L+ ++ GT + C L+ AA++ P++ Sbjct: 89 VISSFAWGPGKNLVSGIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDEN 148 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R+ G ++++L S S G ++ V S L R + E P + + N+ P Sbjct: 149 RRTGLIRHVLCRHSLSTGEVLAVLVTASPV-LPGARAFAARVKELCPAIVTLAQNVNPRP 207 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + G+ E L + + + V I P SF+Q NP LY+TA R + Sbjct: 208 GSAVLGDREKILYGRGYIEDVLCGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKER 267 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF--- 293 + D +CGVG GL A + G+E+ A ACA +A + +F+ D+ F Sbjct: 268 VLDAYCGVGTIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDG 327 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 A+G+ ++V ++PPR G D L ++P +Y SCN +T +D+ L G+R Sbjct: 328 MAARGEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRA 387 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 E +Q DMFPHT H E + +L ++ Sbjct: 388 ESIQGVDMFPHTEHIETVAVLTRR 411 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 185/391 (47%), Gaps = 28/391 (7%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADF------PVEEWCAPVSGPEQ--GFRNKA 59 A +C CQ EQL K + N L P+E P+ G E +RNKA Sbjct: 80 ASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPME----PIVGMENPYYYRNKA 135 Query: 60 KMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V + ++ + R + D C + S P+ A ++ F+ + ++ Y+ Sbjct: 136 QFPVGKRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDEES 195 Query: 118 KRGELKYILLTESQSDGGMMLRFVLR-----SDTKLAQLRKALPWLHEQLPQLKVITVNI 172 +G +++ILL + +M+ V+ + KL + A P L + ++ I +N Sbjct: 196 HQGLVRHILLRVGFTTKELMICVVINGKELPASDKLIKQILACPNLPKDF-RVTSICLNK 254 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 ++ GE I L + + D+ I P SF+Q NP +LY A D+ Sbjct: 255 NTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLT 314 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF-----QA 287 + +WDL+CG+G L A + G+EI +AI AK +A + +F + Sbjct: 315 GNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEE 374 Query: 288 LDSTQFATAQGDV-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + Q+ + G + ++++V+PPR+G + L + + M P+ I+Y SC+ T+A+D++ L Sbjct: 375 VLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLKYL 434 Query: 347 --PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 G+ +++V+ D FPH+ H E +TLL ++ Sbjct: 435 IEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/423 (25%), Positives = 190/423 (44%), Gaps = 56/423 (13%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQ-- 53 QC L+ RC CQ +QL K ++N L ++ ++ P G + Sbjct: 70 QCELHK--RCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPY 127 Query: 54 GFRNKAKMVV----SGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAG 109 +RNKA+ V G++ + P + DC L + +K ++ G Sbjct: 128 RYRNKAQFPVGYDRDGNIVTGFYASRSHNIIPVE--DCRLGVPQNKEILDIIKEWMNECG 185 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLR--KALPWLHEQLPQLK- 166 +TPY+ +G ++++L+ + +M+ V+ D+ A+ R A L E+L ++ Sbjct: 186 ITPYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDG 245 Query: 167 --VITVNIQPVHMAIMEG------------ETEIYLTEQQALAERFNDVPLWIRPQSFFQ 212 I+ NI + ++ G E I+L + + I PQSF+Q Sbjct: 246 MTSISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQ 305 Query: 213 TNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAK 272 NP +LY+TA + +++WDL+CG+G L + Q+ G+EI +AI AK Sbjct: 306 VNPKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAK 365 Query: 273 QSAAELGLTRLQF-------------------QALDSTQFATAQGDV--PELVLVNPPRR 311 +A G+T QF + + +T D+ P++++V+PPR+ Sbjct: 366 NNAKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRK 425 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVL 369 G + D + M+P I+Y SC++ T+A+D++ L + + + Q FD F HT H E + Sbjct: 426 GCDEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESI 485 Query: 370 TLL 372 LL Sbjct: 486 CLL 488 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 178/378 (47%), Gaps = 22/378 (5%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNL------LADFPVEEWCAPVSGPEQGFRNKAKMVVS 64 C C W P QL K + + +A+ PV A S ++ FRNK + Sbjct: 83 CGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPV--LPALASPAQRFFRNKMEFAFE 140 Query: 65 GSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + + L G+ + ++ +C L + +++ + A+ GLT ++V G Sbjct: 141 NDSPQGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVRSGEGFF 200 Query: 123 KYILLTESQSDGGMMLRFVLRSD-TKLAQLRKALPWLHEQLPQL-KVITVNIQ-----PV 175 +Y+++ E+ G M++ + + T +A+ L + L + + IT I PV Sbjct: 201 RYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHGERRSPV 260 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A E +Y T L E+ N + P +FFQTN A L TA D+ Q V Sbjct: 261 QAAY--AEKTLYSTGDSHLTEQLNGRTFTMAPHAFFQTNTAATEILSRTAADYAGQGGV- 317 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 +WDL+CGVG GL A +TG+E++ EA+ A +A + + +F A D + Sbjct: 318 -LWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVRRLLI 376 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERV 354 + P++V+ +PPR G+ + L + APR I+Y SC+ T A+D L +R+E V Sbjct: 377 RHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDAAALTDSYRLEAV 436 Query: 355 QLFDMFPHTAHYEVLTLL 372 Q DMFPH+AH E + L Sbjct: 437 QPVDMFPHSAHIESVALF 454 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/328 (25%), Positives = 161/328 (49%), Gaps = 11/328 (3%) Query: 54 GFRNKAKMVV----SGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAG 109 +RNK++ + SGS+ L G+ D P + DC + + ++ + Sbjct: 137 NYRNKSQFQIGRSQSGSIIAGLYGLDSHDIVP--IKDCIVQHPATNKTTGIVRRILEDFN 194 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVIT 169 ++ YN +++G+++ I+ G + + V +T L + + + ++LP++K I Sbjct: 195 VSVYNERKRKGDVRTIVTRVGFETGEVQVVLVTAKET-LPHKEEIVKAIQKRLPEVKSII 253 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 N+ +++ GE L + + E DV + ++FFQ NP +LY + Sbjct: 254 QNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAA 313 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 + + + D +CGVG G+ A ++ G+++ E+I AK++A + G+ + Sbjct: 314 QLTGKEKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGT 373 Query: 290 STQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + + T +G P++V+V+PPR G D + + P+ +Y SCN T+AKD++ L Sbjct: 374 AEHWLPKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTL 433 Query: 347 P-GFRIERVQLFDMFPHTAHYEVLTLLV 373 +R++ +Q DMFP TAH E + LV Sbjct: 434 SKDYRVDYIQPVDMFPQTAHVEAVARLV 461 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/401 (26%), Positives = 185/401 (46%), Gaps = 36/401 (8%) Query: 10 RCRSCQWIMQPIPEQLSAKTAD-LKNLL--ADFPVEEW-CAPVSGPEQ--GFRNKAKMVV 63 +C CQ EQL K L NL+ F +E P+ G E +RNKA+ Sbjct: 76 QCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPF 135 Query: 64 SGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + + ++ + G D+ DC L + +K F+ GL PY+ +G Sbjct: 136 GRNKDGEIIAGFYA-GRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYDENAHKG 194 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL-----------------PWLHEQLP 163 ++++L+ + G +M+ V+ T +L L L E+L Sbjct: 195 LVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGCLVEKLC 254 Query: 164 QLKVITVNIQPVHMA---IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 Q+K +T V+M ++ G+ + L + + DV I P SF+Q NP + Sbjct: 255 QVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVNPVQTEK 314 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY TA ++ + +WDL+CG+G L A ++ G+EI +AI A+++AA G+ Sbjct: 315 LYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGM 374 Query: 281 TRLQFQALDSTQFATAQGDV----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 ++F + + Q + ++++V+PPR+G D + M P ++Y SC++ Sbjct: 375 DNVEFFVGKAEEVLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTILKMRPEKVVYVSCDS 434 Query: 337 QTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T+A+D+R L G+ + +V+ DMFP T H E + L ++ Sbjct: 435 ATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/385 (27%), Positives = 175/385 (45%), Gaps = 19/385 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQ--GFRN 57 C LY G C CQ QLS KT +K+++ + + P GP+ +RN Sbjct: 75 HCDLY--GFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRN 132 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K +M V G+ +G + G+ + + +CP+ + A + PY+ Sbjct: 133 KMQMPVGGTKGDIQMG-FYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDE 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 +G L++++ QS G M+ V ++ L K + L E++PQ++ I N+ Sbjct: 192 HTGKGVLRHVIGRIGQS--GWMIILVTATE-HLPHQEKWVEKLTERVPQVETIVHNVNGK 248 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G L + + D+ + P SFFQ NP + LY A + + Sbjct: 249 RTNVILGPKNSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE 308 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---- 291 + D +CG G L A + GIEI AI A+++A G +F D+ Sbjct: 309 IVIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIP 368 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 + A G P++++ +P R G + + ++M P+ I+Y SCN TMA+DI L G+ Sbjct: 369 KLYKA-GVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGY 427 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 ++ VQ DMFP TAH E + LL + Sbjct: 428 ELKEVQPVDMFPMTAHVEAVALLTR 452 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 175/378 (46%), Gaps = 26/378 (6%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPV-EEWCAPVSGPEQ--GFRNKAKMVVSGSV 67 C CQ P QL K A +++ L + P+ G E +RNKA+ V G Sbjct: 83 CGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGCE 142 Query: 68 EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 +G + DL DC + + + A ++ ++ + Y+ G ++ Sbjct: 143 AGAEIGFYRKHS--HDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRN 200 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITV-----NIQPVHMAI 179 ++ + G +M+ V L +ALP+ E L L + + NI Sbjct: 201 LMTRKGFKSGELMVVLV--------TLGEALPFEAELLATLSDLPITTLVQNINDERTNR 252 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G L + + ++ +++ I P SFFQ NP LY++A ++ + ++D Sbjct: 253 ILGANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFD 312 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TA 296 ++CG+G L A ++ GIE AI+ A+++AA G+ +F + Q A Sbjct: 313 IYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELYA 372 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 QG ++V+++PPR+G K + L MAPR ++Y SCN QT+A+D+ L GF ++ V Sbjct: 373 QGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFMLDEV 432 Query: 355 QLFDMFPHTAHYEVLTLL 372 Q DMFPH+ H E + L Sbjct: 433 QPVDMFPHSMHVEAVARL 450 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/394 (25%), Positives = 178/394 (45%), Gaps = 24/394 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-------PVEEWCAPVSGPEQG- 54 C +YD +C CQ QL+ K + + L EE P G Sbjct: 75 CGIYD--KCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGM 132 Query: 55 -----FRNKAKMVVSGSV-EKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIA 106 +RNKA++ V S L+ + G+ D C + V +K Sbjct: 133 NDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGR 192 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 G++ Y+ +G L++++ G +M+ V KL Q + + LP++K Sbjct: 193 ELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNG-RKLPQAELWVERIRAALPEVK 251 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I N+ ++ G+ L + + + + + I +SF+Q NP+ +LY TA Sbjct: 252 SIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQTIELYRTAV 311 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 D+ + + + D +CG+G L A ++ G+EI EAI AK++A G++ F+ Sbjct: 312 DYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFE 371 Query: 287 ALDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A + +G +P++++V+PPR+G L D + M P ++Y SCN T+A+D+ Sbjct: 372 AGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPSTLARDL 431 Query: 344 RELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 R L G++ V DMFP T+H E + +V++ Sbjct: 432 RTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 163/328 (49%), Gaps = 12/328 (3%) Query: 53 QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDL-CD-CPLYPASFAPVFAALKPFIARAGL 110 G+RNK ++ + + L+ + + + C+ C L P F + A L Sbjct: 122 NGYRNKLQIPIGTDKDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNL 181 Query: 111 TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITV 170 T Y+ +G L+++ L + G + L V+ + + +++ L E+ P++ + Sbjct: 182 TAYDETTHKGILRHLYLRKGYYSGEICLCIVVAKN--VPEIKILSDRLLEKYPEIVSSVI 239 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 N+ ++ G+ EI LT + + + + I P++F+Q N A QLY++A D+ Sbjct: 240 NVNNRDTNVILGDEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFA- 298 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + K + DL+CG G GL A ++ G+EI EAI AKQ+A G+T +F D+ Sbjct: 299 EPKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADA 358 Query: 291 TQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD---IR 344 + A ++ P++++V+PPR+G G+ C+ ++ + I+ SCNA T A+D Sbjct: 359 AEAARILHSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFA 418 Query: 345 ELPGFRIERVQLFDMFPHTAHYEVLTLL 372 EL G+ ++ DMF T H E + LL Sbjct: 419 EL-GYSTDKCVAVDMFSGTNHVETVVLL 445 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 170/387 (43%), Gaps = 26/387 (6%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP------EQGFRNKAKMV 62 G C C W P P QL+ K +++ L E AP P +QGFRNK + Sbjct: 78 GDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIE--APNVLPTLPSPLQQGFRNKMEFA 135 Query: 63 VSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + + L L R G E D+ C L A+ V + +GL ++ A RG Sbjct: 136 FTTDDREMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRG 195 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL-PWLHEQLPQLKVITVNIQPVHMAI 179 +++++ E G +++ + + + +A L + +P++ +I+ + + Sbjct: 196 FWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQV 255 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G+ ++ + L E+ + L +F QTN LY +H+WD Sbjct: 256 AYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGREHVWD 315 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD------STQF 293 L+CGVG L A + G+E ++ A+++A G T F A D S Sbjct: 316 LYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRSK 375 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIER 353 AQ +P++V+ +PPR G+ + D L AP I+Y SC+ TMA+D+ G ++R Sbjct: 376 GKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV----GLLMQR 431 Query: 354 VQL-----FDMFPHTAHYEVLTLLVKQ 375 L D+FPHT H E + LL + Sbjct: 432 YTLHEARPVDLFPHTPHVETVVLLSNK 458 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 164/335 (48%), Gaps = 11/335 (3%) Query: 50 GPEQ--GFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFI 105 G EQ +RNKA+ + G + + + + E D C + + V A +K +I Sbjct: 121 GMEQPVNYRNKAQYPI-GRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYI 179 Query: 106 ARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQL 165 + ++ Y+ G +++I+ G +M+ V+ +Q +K + L +++P++ Sbjct: 180 EKNNISTYDEITGEGLVRHIMTRVGFKTGEVMVVLVINGRNIPSQ-KKLVDRLVKEIPEI 238 Query: 166 KVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 K + +N+ ++ G+ I + + + + + I P SFFQ NP LY A Sbjct: 239 KSVVLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKA 298 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 D+ + + ++DL+CG+G L + ++ G+E+ A+ A ++A G+ +F Sbjct: 299 LDYAQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEF 358 Query: 286 QALDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 ++ + +G ++V+V+PPR+G + + L M P I+Y SCN T+A+D Sbjct: 359 IVGEAEKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARD 418 Query: 343 IRELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ L GF + VQ DMFP T H E + L+ K+ Sbjct: 419 LKYLAEGGFEVREVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 110/407 (27%), Positives = 182/407 (44%), Gaps = 33/407 (8%) Query: 1 MQCALYDA--GRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPV--SGPEQG 54 +QCA + A G C C W P EQL K + + L + P+ S E+G Sbjct: 70 VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129 Query: 55 FRNKAKMVVSGSVEKPL-LGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTP 112 FRNK + S + L LG+ R D+ +C L + A++ +GL Sbjct: 130 FRNKMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPG 189 Query: 113 YNVARKRGELKYILLTESQ--SDGGM----------------MLRFVLRSDTKLAQ-LRK 153 ++ +R+ G +++++ E + D G +++ + AQ + + Sbjct: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249 Query: 154 ALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQT 213 L + P++ + +++ I GE + + + L ER L + P SFFQT Sbjct: 250 LAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQT 309 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N A A LY AR P +WDL+ GVG LH A + G EI EA+ A+ Sbjct: 310 NTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARA 369 Query: 274 SAAELGLTRLQFQALDS----TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFI 329 +AA + F + D + +G P +V+V+PPR G+ + + + +S P I Sbjct: 370 NAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERI 429 Query: 330 IYSSCNAQTMAKD--IRELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +Y SCN TMA+D + G+ ++ + D+FPH+ H E + LL + Sbjct: 430 VYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/352 (28%), Positives = 166/352 (47%), Gaps = 25/352 (7%) Query: 38 DFPVEEWCAPVSGPE-QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLC-DCPLYPASFA 95 D VE +S P +G+RNKA+ V+ K + G + C DC L +FA Sbjct: 122 DLTVERI---LSNPHTEGYRNKAQFPVALRDGKAVAGFYAKRSHRVVPCGDCRLQSPAFA 178 Query: 96 PVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL 155 P+ + FI L PY+ G ++ + L E+ + G +M+ V +K + Sbjct: 179 PLVRVILDFIDEYHLPPYDETNHTGLIRNLYLREAPATGEIMVCLV--------ATKKHI 230 Query: 156 PWLHEQL-------PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQ 208 P E P++K + VN ++ G+ + + + + V + + P Sbjct: 231 PSADELARRLVACNPKVKSVLVNRNSQKTNVILGDRCSVVWGKPVIHDVLRGVDVELSPL 290 Query: 209 SFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAI 268 SF+Q N A +LY A ++ + + DL+CG G GL A ++ G+EI A+ Sbjct: 291 SFYQVNSLQAERLYDLAEEYAHLTGEETLVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAV 350 Query: 269 ACAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMA 325 A++SA G+ +F D+ + A + QG P++V+V+PPR+G + + MA Sbjct: 351 EDARRSAQRNGVRNAEFLCADAKEAARSLAQQGLRPDVVIVDPPRKGCDASVLQSICEMA 410 Query: 326 PRFIIYSSCNAQTMAKD--IRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 P+ I+ SCN T A+D + + G+R+E V D+F T H E + LVK+ Sbjct: 411 PQRIVMISCNPATAARDCGLLQQQGYRVEEVAAADLFSRTLHVECVISLVKE 462 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 157/319 (49%), Gaps = 7/319 (2%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RNK++M V K + G+ + DL DC + V +K A + PY Sbjct: 143 YRNKSQMQVGHHQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPY 202 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 N ++ G L+ I+ T + G ++ + + ++ + + ++LP + I NI Sbjct: 203 NERKRTGVLRTIV-TRVGFETGEYQVVLVTAKKDIPKVDLFIEAIKQRLPDVTSIVQNIN 261 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 P +++ G+ I L ++ + E ++ + P++FFQ NP +LY A++ + Sbjct: 262 PKKTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTG 321 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + D +CGVG GL A ++ G+++ E+I AK +A G+ + + + Sbjct: 322 KEKVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHL 381 Query: 294 A---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 +G P++V+V+PPR G+ + L + P+ I+Y SCN T+AK++ L G Sbjct: 382 LPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKGG 441 Query: 349 FRIERVQLFDMFPHTAHYE 367 ++++ +Q DMFP TA E Sbjct: 442 YKLKALQPVDMFPQTAQVE 460 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 178/393 (45%), Gaps = 34/393 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPEQGFRNKAKM 61 C +D RC C W QL KT +K LL + G E + + KM Sbjct: 81 CPHFD--RCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKM 138 Query: 62 VVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + S E LLG LH G + C + + + L Y+ Sbjct: 139 EFTFSPEG-LLG-LHEQGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTH 196 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ----LPQLKVI------ 168 G L+++++ ES + G +M+ + ++ +L++A L E+ LP++K + Sbjct: 197 EGLLRHVMVRESFATGEVMVA-LFATEAPEGELKQAADDLTERITKALPEVKSLLWLENR 255 Query: 169 --TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 IQ ++ G IY + R+ LW +FFQTNP A++L A Sbjct: 256 AWADRIQAEQTHVLAGRDFIY---DELCGFRYR---LWF--DTFFQTNPVQAAKLVELAL 307 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + + P + M DLFCGVG F L A L GIEI +I AK++A + G+ F Sbjct: 308 EMGKPQPHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL 367 Query: 287 ALDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A D+ + Q PEL+L++PPR G G + + P I+Y SCN +T A DI Sbjct: 368 ARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADI 427 Query: 344 RELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 EL G+ ++ VQ DMFPHTAH E++ L+ + Sbjct: 428 AELVPFGYTLKTVQPVDMFPHTAHVELVALMSR 460 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 131/259 (50%), Gaps = 6/259 (2%) Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+YI+ S +M+ V+ + + + L + + +LK + +NI Sbjct: 192 NGLLRYIITKVGFSTKEVMVILVING-IDIPYKDELINTLKKNIKELKSVVLNINKSRSR 250 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G I + + + D I P SFFQ NP LY A ++ + + Sbjct: 251 LVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIVI 310 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--- 295 D++CG+G + A + GIE+ S+A+ AK++AA G+ F A + Sbjct: 311 DVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLY 370 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFRIER 353 +G +P++++++PPRRG+ K + D M P+ IIY SCN T+A+D+R E G++ E+ Sbjct: 371 KEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNGYKTEK 430 Query: 354 VQLFDMFPHTAHYEVLTLL 372 VQ DMFP+T H E + L+ Sbjct: 431 VQPVDMFPYTYHVECVVLM 449 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 28/349 (8%) Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 G+RNK + V + ++ L+++GT +L +C + + + I + L Sbjct: 129 GYRNKLQFQVRRLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLP 188 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVL--------------------RSDTKLAQL 151 Y+ RK G ++ +++ SQ G + + FV R + Sbjct: 189 VYD-ERKIGGIRTVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKF 247 Query: 152 RKALPWLHEQLPQLKVITVNIQPVHMAIMEGE-TEIYLTEQQALAERFNDVPLWIRPQSF 210 K L L E+ ++ + VN P + + GE T+I E++ + E D + P++F Sbjct: 248 DKMLSALTEEFEEIVTVAVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAF 307 Query: 211 FQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIAC 270 +Q N A+ LY A + + D +CGVG G A + G++I E+I Sbjct: 308 YQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFD 367 Query: 271 AKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPR 327 A+++A LGL ++ + + G ++V+PPR G+ L + ++ P Sbjct: 368 ARENAKRLGLKNCHYEIGKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETITKFPPE 427 Query: 328 FIIYSSCNAQTMAKDIRELPGF-RIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++Y SCN T+AKD+ L F ++E +Q DMFPHTA E + L K+ Sbjct: 428 KMVYVSCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/392 (27%), Positives = 173/392 (44%), Gaps = 32/392 (8%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPE-QGFRNKAKMVVS 64 G C C+W QL AK + L F E + P G+RNK + S Sbjct: 76 GTCGGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNKMEFSFS 135 Query: 65 GS-------------VEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAALKPFIARA 108 +++ LH G DL +C L + L+ F Sbjct: 136 ADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAK 195 Query: 109 GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVI 168 G P+++ R G L+++++ G +M+ V S A++ + +L EQ P++ + Sbjct: 196 GWEPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVT-SRYDEARMAELGAFLQEQFPEVTTL 254 Query: 169 --TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 T+N +P ++ GE + + + I P +FFQTN A +LY AR Sbjct: 255 VNTINSRPAQVSY--GEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVAR 312 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + P ++DL+CG G + A + G+E+ + A+ A+ +AA G+T F Sbjct: 313 ELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFV 372 Query: 287 ALD-----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 A D + F G P++V+V+PPR G+ + + + P +Y SCN QT A+ Sbjct: 373 AGDLLEVLTPAFVRTHGR-PDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQAR 431 Query: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLL 372 D++ L +RIE VQ D+FPHT H E + L Sbjct: 432 DLKLLRDLYRIEAVQPVDLFPHTDHVESVVAL 463 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 159/376 (42%), Gaps = 18/376 (4%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLA------DFPVEEWCAPVSGPE-QGFRNKAKM 61 G C C W P QL K + LA D PV + V+ PE G+RNK + Sbjct: 77 GVCGGCDWQRLDYPAQLFWKREQVAETLARLGGLPDVPVADT---VASPEVYGYRNKMEF 133 Query: 62 VVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +G + LG+ R D+ CPL V A++ GL Y+ + Sbjct: 134 AFAGRLH---LGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGK 190 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL-PWLHEQLPQLKVITVNIQPVHMA 178 G ++++L +S+ DG + + L L + P+L +++ Sbjct: 191 GVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPELTGFVHSVRRAPTP 250 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + GE + + + L E+ L + P +F QTN A LY P Sbjct: 251 VAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTAL 310 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ-ALDSTQFATAQ 297 DL+CG GG L+ A ++ G++I +I AK SA F+ A + Sbjct: 311 DLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVFEAADAADALDDLA 370 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQL 356 GD P +V+++PPR G + + AP ++Y SCN T+A+D++ L + + V Sbjct: 371 GDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDVTSVTP 430 Query: 357 FDMFPHTAHYEVLTLL 372 D+FPHTAH E + L Sbjct: 431 VDLFPHTAHIEAVASL 446 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 172/383 (44%), Gaps = 24/383 (6%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPEQ--GFRNKAKMVVSG 65 RC C W+ P +QL+ K + L AD + C P+ G + +RNK G Sbjct: 13 NRCGGCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVVSPFVG 72 Query: 66 SVEKP------LLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 +K L GM R GT D +C + A + ++ + + + PY+ R Sbjct: 73 IYDKRTRRRRILCGMYER-GTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDR 131 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L++ + + G +M+ V R++ + +K + L + P++ + N+ Sbjct: 132 DEGFLRHAQVRVGHNSGEVMVTLVTRTE-QFPTAKKFVRALVSRHPEITTVVQNVNSRKT 190 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ E L + + + I SF+Q N LY+TA + + + Sbjct: 191 NVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGTETV 250 Query: 238 WDLFCGVGGFGL------HCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 D +CG G GL + +L G+E ++A+A A+ +A G+ +F A D+ Sbjct: 251 MDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADAG 310 Query: 292 QF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 + QG +++ ++PPR G +++P+ I+Y SCN T A+D + L Sbjct: 311 AYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARDAKYLIE 370 Query: 347 PGFRIERVQLFDMFPHTAHYEVL 369 G+RI+ +Q DMFPHT H E + Sbjct: 371 HGYRIDVLQPVDMFPHTDHVECV 393 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 176/392 (44%), Gaps = 36/392 (9%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGP-EQGFRNKAKMV 62 G C C + P Q+ K +K L+ D E+ P E G+RNK + Sbjct: 76 GDCGGCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYRNKMEFS 135 Query: 63 VSGSV-EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + PL LH+ G+ D+ DC L + + + L Y+ Sbjct: 136 FGDEFKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNYYHKMSH 195 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTK---------LAQLRKALPWLHEQLPQLKVI- 168 G L+++L+ + G +++ + S T L +LR++L L + + ++ Sbjct: 196 EGYLRHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGSIVGILH 255 Query: 169 TVN------IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 TVN +Q I++G+ I+ ++ L +F I SFFQTN A LY Sbjct: 256 TVNDSLADVVQSDRTDILDGQDFIF---EEVLGLKFK-----ISTFSFFQTNSLGAEVLY 307 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 RD+V + K ++DL+ G G A ++ G+EI EA+ A+++A+ LT Sbjct: 308 NCVRDFVGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTN 367 Query: 283 LQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 +F A D + + P+L++++PPR GI D + ++Y SC ++A+D Sbjct: 368 CEFIAGDVLKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSSLARD 427 Query: 343 IRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 + L G+ +E+V+ DMFP T H E + LL Sbjct: 428 LVVLQERGYWVEKVRCVDMFPCTVHTETVCLL 459 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 107/419 (25%), Positives = 183/419 (43%), Gaps = 51/419 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGPEQGFRN 57 C Y G C C + P EQL K+ +K +L D+ EE S E RN Sbjct: 74 CKNY--GLCGGCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILG--SPNEWETRN 129 Query: 58 KAKMVVSGSVEK-PLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPY 113 K + S + P+ LH+ G D+ DC + F V + A ++ Y Sbjct: 130 KMEYAFGDSYKGGPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFY 189 Query: 114 NVARKRGELKYILLTESQSDGGMML------RFVLRSDTKLAQL---------------- 151 N A RG L+++L+ + G +++ F+ +S+ ++ Sbjct: 190 NKAMHRGYLRHLLVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDK 249 Query: 152 --------RKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAER--FNDV 201 + L + E+L ++ + + +H+ E ++ Q+ L R N+ Sbjct: 250 DKEQSQAEKNILAKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEE 309 Query: 202 PLWIRPQ----SFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 257 L ++ + SFFQTN A LY+ R++V ++DL+ G G G + + Sbjct: 310 LLGLKFKITTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKK 369 Query: 258 LTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPL 317 + GIEI EA+ A ++A GLT +F A D + + P+ ++++PPR G+ Sbjct: 370 VIGIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLDEVKEKPDFIILDPPRDGVSPKA 429 Query: 318 CDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + + R I+Y +C ++ +DI E G+R+++V L DMFP T H E + LL K Sbjct: 430 LKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLLSK 488 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/380 (24%), Positives = 179/380 (47%), Gaps = 17/380 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+C + A +C SCQ+I Q + L K + K + D V PVSG E + + K Sbjct: 1 MKCDI--AKKCGSCQFINQGYVKSLEYKNEECKKIFKDLKVN--VHPVSGMEDPYYYRNK 56 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 +++ +K L+ + + + C ++ + + + + ++ Y+ R+ Sbjct: 57 TIIA--FDKTYNYGLYEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQRR 114 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 RGE+++IL+ + ++ ++ ++ + L + P +K I +N + Sbjct: 115 RGEIRHILIRRAVKTNQTLV-VIVSNEAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQTS 173 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 I+ GE E L + + + + I P+SF+Q N LY+ A + K M Sbjct: 174 IVLGEQEKVLFGKGFIVDELCGMTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIM- 232 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---AT 295 D +CG+G GL + Q+ G+E+ +A+ AK + + ++F D+T+F A Sbjct: 233 DTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVEAA 292 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI---RELPGFRIE 352 Q ++++++PPR G + ++ P+ I+Y SC+ T +D+ R+L G+ + Sbjct: 293 KQKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKL-GYDFK 351 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 V +DMFP T+H E + LL Sbjct: 352 DVYPYDMFPFTSHVETVVLL 371 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 159/326 (48%), Gaps = 12/326 (3%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +RNK + V G +KP +G +R T + D+ C + V +K I + + Sbjct: 125 YRNKTALPVGGDYKKPQIG-FYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEV 183 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFV-LRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 Y+ + +G L++I++ S + MM+ V + L ++K + ++K + +N Sbjct: 184 YDEKKHKGVLRHIVVRNSFAFDEMMIILVCTKVPENLETIKKDIL---NNFSKIKSLYLN 240 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + P ++ G+ +I + + +R ++ I P+SFFQ N LY+ ++R Sbjct: 241 LNPKRTNVILGDEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRN 300 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF---QAL 288 + + ++D++ G+G + A ++ IEI +A+ AK+S+ G++ ++F +A Sbjct: 301 IDAEIVFDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAE 360 Query: 289 DSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 G +P+ V+++PPR G K L + L IIY SCN T+A+D L Sbjct: 361 IEIPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFS 420 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLL 372 G+ I VQ DMFP T H E + L+ Sbjct: 421 NGYEILEVQPVDMFPQTFHVECVVLM 446 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 100/367 (27%), Positives = 165/367 (44%), Gaps = 28/367 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 G+C C QL K LK +L F VE +P G RN+ + ++ Sbjct: 65 GKCGGCTLQHLNYDYQLEFKRKKLKRILG-FEVEVVPSP---KIFGHRNRIDLAIT---- 116 Query: 69 KPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 K +G R D+ +CP++ + LK FI ++ +N+ + G L+Y++ Sbjct: 117 KDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMV 176 Query: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEI 186 L E + +M+ FV TK L + I ++ + G+ E Sbjct: 177 LREGKFTEEVMVNFV----TKEGNLPDPTNYF-----DFDSIYWSVNRSKSDVSYGDIER 227 Query: 187 YLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGG 246 + ++ + ER +DV I P SFFQTN A L + V + + D++ GVG Sbjct: 228 FWG-KEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG---EKILDMYSGVGT 283 Query: 247 FGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLV 306 FG++ A + G + AI A+++ E+ +F+ + + D V+V Sbjct: 284 FGIYLAKRGFNVKGFDSNEFAIEMARRNV-EINNVDAEFEVASDREVSVKGFDT---VIV 339 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHY 366 +PPR G+ L L+ P I+Y SCN +T A+D++ L +RI+ + DMFPHT H Sbjct: 340 DPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD-YRIDEIVALDMFPHTPHV 398 Query: 367 EVLTLLV 373 E++ LV Sbjct: 399 ELVAKLV 405 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 176/392 (44%), Gaps = 31/392 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKN------LLADFPVEEWCAPV--SGPEQGFRNKAK 60 G C C+ + +QL K + + L+ + PV PV + P G+RNK + Sbjct: 85 GHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVH----PVMPADPVWGYRNKME 140 Query: 61 MVVSG------------SVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFI 105 + +++ LH GT + D C L P + ++ + Sbjct: 141 FSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVRAYA 200 Query: 106 ARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRS-DTKLAQLRKALPWLHEQLPQ 164 +G+ Y + +G ++++L S + M+ V + D +L Q L L ++ P+ Sbjct: 201 RASGVPAYGLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLLQPLADL--LADRYPE 258 Query: 165 LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 + + NI + +GE EI L +++R I SFFQTN A +LY Sbjct: 259 VVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISANSFFQTNTRGAERLYTV 318 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 AR++ + + DL+CG G + + ++ G+EI +A A + ++ ++ Sbjct: 319 AREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVR 378 Query: 285 FQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 F A D + ++++++PPR G+ K + + + MAP I+Y SCN T+A+D+ Sbjct: 379 FVAGDVKETLPRLDCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPATLARDVA 438 Query: 345 ELP-GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L + + VQ DMFPHT H E + L K+ Sbjct: 439 MLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 175/385 (45%), Gaps = 17/385 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQGFR 56 C Y +C CQ QL K + NL + ++E V+ P + +R Sbjct: 74 CIYY--AKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVN-PWR-YR 129 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK+++ V S ++ +R + + D+ C + V +K ++ ++ YN Sbjct: 130 NKSQIPVGQSNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYN 189 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 K G ++++++ MM+ FV T Q + L ++ P + I NI Sbjct: 190 EKTKTGLIRHLVVRTGYHTDEMMVIFVTNGAT-FKQSELLVNKLKKEFPNITSIKQNINN 248 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 H ++ G + L + + ++ ++V I SF+Q N + +LY A ++ + Sbjct: 249 SHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGK 308 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ---ALDST 291 + + D +CG+G GL+ A + G+E+ +AI A+ +A + L F+ A D Sbjct: 309 EIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVI 368 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 +QG P++V+V+PPR+G + L + P+ I+Y SCN T +D + L + Sbjct: 369 LTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAEQYE 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 + + DMFP T H E + L V++ Sbjct: 429 LVEITPVDMFPQTTHIETVALFVRK 453 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 177/382 (46%), Gaps = 29/382 (7%) Query: 8 AGRCRSCQWIMQPIPEQLSA-----KTADLKNLLADFPVEEWCAPVSGPE--QGFRNKAK 60 A +C CQ +Q + +L A + AD + VE PV E +RNK + Sbjct: 84 ARQCGGCQ--LQIMEAELQAEFKRHRVADCFQRIGHLDVE--VQPVLSMEFPWNYRNKVQ 139 Query: 61 MVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V + + ++ +R + + D +C L+ + +L+ +I AG Sbjct: 140 VPVGVNRDGKVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAG--------D 191 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +L+++L+ + G +M+ + +S+ L + + L PQ++ I +N+ Sbjct: 192 PAQLRHLLIKHAFKTGQVMVVLIAKSEN-LKGKDELIERLTAAYPQIRSIILNVNGREDN 250 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ EI L ++ E + I +SF+Q NP LY A + + + Sbjct: 251 VILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEETVI 310 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 D++CG G GL A ++ GIEI A+ AK++A G+ +F D+ TAQ Sbjct: 311 DVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAG-VCTAQL 369 Query: 298 ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 P++ +V+PPR+G+ D L M P I+Y SC+ T+A+D L G+ +E Sbjct: 370 LERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVE 429 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 VQ DMFP T H E + L+ K Sbjct: 430 VVQPVDMFPQTTHVETVVLMSK 451 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 169/337 (50%), Gaps = 14/337 (4%) Query: 47 PVSGPEQ--GFRNKAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALK 102 P+ G E+ +RNKA+ S + ++ + R + + DC L + ++ Sbjct: 162 PIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDCLLGVEENREILRIVR 221 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F+ G+ PY+ RG +++ L+ + + G +M+ V+ + KL + + L Q+ Sbjct: 222 EFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVV-NGRKLPKDEVLVERLR-QV 279 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 + I++ + ++ G+ + L + + DV I P SF+Q NPA +LY Sbjct: 280 DGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISPLSFYQVNPAQTVKLY 339 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 TA ++ + +WDL+CG+G L A ++ G+EI +AI A+++A G+ Sbjct: 340 GTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRNAKINGIEN 399 Query: 283 LQF-----QALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 ++F + + +F Q ++++V+PPR+G + D + M P+ ++Y SC++ Sbjct: 400 VEFFVGKAEEVLPREFEEKQ-IYADVIVVDPPRKGCDEVCLDTIVKMGPKRVVYVSCDSA 458 Query: 338 TMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 T+ +D++ L GF +ERV+ DMF + H E + ++ Sbjct: 459 TLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMM 495 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/378 (22%), Positives = 166/378 (43%), Gaps = 29/378 (7%) Query: 14 CQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ-------------GFRNKAK 60 C + M QL K F VEE ++G +RNK Sbjct: 93 CDFAMLKYESQLKYKR---------FMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKII 143 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFA-PVFAALKPFIARAGLTPYNVARKR 119 S K + G R D + + + LK + + ++ Y+ + Sbjct: 144 EPFSVYANKIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHK 203 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+ I++ + S+ M+ ++ S+ ++K L L E + ++K I +++ Sbjct: 204 GILRNIMI-RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNT 262 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE I + ++++ E N + I P SFFQ N A +LY A + + K++ D Sbjct: 263 VIGEKNILIYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVD 322 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF--QALDSTQFATAQ 297 + G G G+ A ++ IEI A +++A E G+ ++F A++ Sbjct: 323 AYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVN 382 Query: 298 GDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 + + ++ +PPR+G+ + D ++ + + ++Y SCN T A+D++ G+ ++++ Sbjct: 383 NNQKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKL 442 Query: 355 QLFDMFPHTAHYEVLTLL 372 Q DMFP T+H E + L+ Sbjct: 443 QAVDMFPQTSHIECVGLI 460 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 7/324 (2%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCD-CPLYPASFAPVFAALKPFIARAGLTPY 113 +RNK +M + + + G + CD C + + +K + + + PY Sbjct: 124 YRNKVQMPIGVKGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPY 183 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + +G +K+IL +ML + D K+ + K + + ++ +K + NI Sbjct: 184 DKLSHQGNIKHILTKHGYHSNEIMLVLISYLD-KINNVDKLVAEITKEFSMIKTVIQNIN 242 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 ++ G+ EI L + + D I +SF+Q NP +LY A ++ + Sbjct: 243 HRIDNVILGDKEIILFGDGFIYDNLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSN 302 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + D +CG+G L A ++ G+EI AI A+ +A + ++F+ D+ ++ Sbjct: 303 DDVVLDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKY 362 Query: 294 AT--AQGDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGF- 349 ++ ++V V+PPR+G K DYL P IIY SC+ T A+DI+ L F Sbjct: 363 MIELVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFN 422 Query: 350 -RIERVQLFDMFPHTAHYEVLTLL 372 +++ Q DMFPHT H E + L Sbjct: 423 YQVDMCQPVDMFPHTTHIENIIRL 446 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 181/387 (46%), Gaps = 21/387 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQGFRN 57 QC ++D+ C CQ + P+QL K ++ L F + + G + + Sbjct: 73 QCPIFDS--CGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHY 130 Query: 58 KAKMVV-SGSVEKPLLGMLHRDGT----PEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +AK+ + S ++ L+ +G+ P D +C + S + + + + + Sbjct: 131 RAKLQFQTRSFSGKVVAGLYAEGSHRLIPID--NCLVQDQSTQEIVNHITQLLDQYKIPI 188 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 YN RK L+ I++ ++ + + + F+ + LA + + + + P++K + +NI Sbjct: 189 YN-ERKIEGLRTIMIRKAIASQTLQIIFITSKEVHLAPI---ILDMTKTYPEIKTVALNI 244 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + + G+ + Q + E D + P++F+Q NP S LYA + + Sbjct: 245 NRSKSSELYGDKTEIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVS 304 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ---ALD 289 H+ D +CGVG G A + G++I EAI AK++A ++G ++ A D Sbjct: 305 ESDHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAED 364 Query: 290 STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG- 348 G + ++V+PPR G+ K L + + T P ++Y SCN T+A+D+ EL Sbjct: 365 IIPKWYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKV 424 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + ++ +Q DMFPHTA E + L ++ Sbjct: 425 YTVDYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 176/378 (46%), Gaps = 16/378 (4%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQ--GFRNKAKMVVS 64 +C CQ EQL K +++ L + P + P G E +RNK + Sbjct: 83 KCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLP-DAVVLPTIGMENPWNYRNKIHLHAG 141 Query: 65 GSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + +LG E C + + A L+ I + L PYN K+G L Sbjct: 142 RKNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLL 201 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 + ++L ++++ G +ML V S Q L Q P + I NI + +++ G Sbjct: 202 RGVMLRKAEATGQVMLVLVTVSGNLPGQ-STFTRELVNQCPDITSIIRNINNGNNSLLLG 260 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + ++ + ++ D+ +I SF+Q NP +LY A ++ + + D +C Sbjct: 261 SVNKLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYC 320 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST----QFATAQG 298 G+G ++ + ++TG+E + A+ A+++AA L ++F + +FA Sbjct: 321 GIGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKLLPEFAERNN 380 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 +V ++++++PPR+G + + + ++ M IIY SCN T+A+D+ L G+ I VQ Sbjct: 381 NV-DIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLGYGIIEVQP 439 Query: 357 FDMFPHTAHYEVLTLLVK 374 DMFP T+H E+ T L K Sbjct: 440 VDMFPQTSHIEICTFLSK 457 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 100/388 (25%), Positives = 161/388 (41%), Gaps = 23/388 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQG---FRNKA 59 C+++ +C C + EQL K ++ +L + ++ P +RNK Sbjct: 4 CSVFK--KCGGCSKLHINYEEQLKIKEKNVLSLFDQYQIKPNNYHGITPSVDIYEYRNKM 61 Query: 60 KMVVSGSVEK-PLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + + PL+ L G D+ DC L F + + F + + N Sbjct: 62 EYSFGNEYKDGPLVLGLRGKGKKFDVYYTKDCKLVDYDFNNIVIKTREFFLKKNIPFRNY 121 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ------LKVIT 169 G L+ + + + G ++L V D Q + W E L + +I Sbjct: 122 KNHSGFLRNLGIRKGLKTGEILLNLVTSLDNTYYQ--EVETWKEEMLNTNLKGNIVSIIQ 179 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 + + E EI L + E+ D+ I P SFFQTN LY TA + Sbjct: 180 SKTESKANVVKADEMEI-LYGRDYFYEKILDLTFKIGPFSFFQTNTKGTEVLYQTALSYA 238 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 V ++D + G G L A ++ GIEI EA+ AKQ+A + ++F D Sbjct: 239 ENSDV--VYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKD 296 Query: 290 STQFATAQGDV--PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 F Q P+ ++V+PPR G+ L ++ T IIY SCN +T+ +++EL Sbjct: 297 VKDFVKQQSSTEKPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNLKELS 356 Query: 348 G-FRIERVQLFDMFPHTAHYEVLTLLVK 374 + I L DMFPHT H E + L+ + Sbjct: 357 DLYTISDFHLVDMFPHTDHVESVVLMTR 384 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 28/386 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPEQGFRNKAKMVVS-GS 66 G+C C P +QL K ++ L ++ + P+ G + + + KM + G Sbjct: 77 GQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNKMEFTFGD 136 Query: 67 VEKP---LLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 ++K LGM H G + +C + + + A + L Y + + G Sbjct: 137 LKKGGELNLGM-HAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYRIMAREG 195 Query: 121 ELKYILLTESQSDGGMMLRFVLRS--DTKLAQLRKALPWLHEQLPQLKVI-TVN------ 171 L+ +++ ++++ G +++ V S D L + + + ++ + + ++ T+N Sbjct: 196 YLRNLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDV 255 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 +Q + I+ G Y+ E L +F I P SFFQTN A +LY+ RD++ + Sbjct: 256 VQCDKLNILYGRD--YIIED-LLGLKFK-----ITPLSFFQTNSKGAEKLYSIVRDFIGE 307 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 K ++DL+CG G G A ++ GIE+ EA+ A+++A L +F A D Sbjct: 308 SKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIA 367 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 Q P++++++PPR G+ +Y+ I+Y SCN +T+ +D++ L G+ Sbjct: 368 QVIKEVKQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVLVENGY 427 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVKQ 375 IE+V+ DMFP T H E + L ++ Sbjct: 428 VIEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 102/384 (26%), Positives = 175/384 (45%), Gaps = 19/384 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAK----TADLKNLLADFPVEEWCAPVSGPEQ--GFR 56 C +Y+A C CQ QL K ++ P + P G E +R Sbjct: 76 CPVYEA--CGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYR 133 Query: 57 NKA----KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 NK+ +MV SG VE L G P + DC + V ++ + + G+ Sbjct: 134 NKSQFQTRMVGSGQVETGLFGANSHQLVP--IEDCIVQQPVTIKVTNFVRDLLEKYGVPI 191 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 Y+ G ++ I++ G L F+ S KL + R+ L + LP++ I N+ Sbjct: 192 YDEKAGSGIVRTIVVRTGVKTGETQLVFITNS-KKLPKKREMLAEIEAALPEVTSIMQNV 250 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 +++ G+ L ++++ E+ ++ + ++FFQ NP +LY + Sbjct: 251 NQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLT 310 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ---ALD 289 + + D +CGVG G A ++ G++I E+I AK++A + G+ + ++ A D Sbjct: 311 GSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAED 370 Query: 290 STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PG 348 +G P+ V+V+PPR G + L L + + ++Y SCN T+A+D+ L Sbjct: 371 VLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKK 430 Query: 349 FRIERVQLFDMFPHTAHYEVLTLL 372 +RI +Q DMFP TAH E + LL Sbjct: 431 YRIRYMQPVDMFPQTAHVETVVLL 454 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 155/325 (47%), Gaps = 15/325 (4%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHR-DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RN+ + V +K GM R D+ DC L F V + ++R G+ PY Sbjct: 121 YRNRMEYVAYQKGKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPY 180 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 N KRG LK+++L +++ G ++ ++ ++ K + EQLP++ + Sbjct: 181 NRESKRGFLKHLVLRGNRN--GDIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFN 238 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 ++ G + E + E D + P SFFQ N V +L + + P Sbjct: 239 SRDDVVLRGPYRVIYGEG-IITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSP 297 Query: 234 VKHMWDLFCGVGGFGLHCA---TPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALD 289 + DL+ G+G F + A + + GI+I+S A+ S A + + + L+ +D Sbjct: 298 SETFLDLYSGIGTFAFYFARMFKKVVAVEGIKISSRAML----SNARINMISNLEAVNMD 353 Query: 290 STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-- 347 + F + + V+++PPR GIGK + + + P+ I+Y SCN T+A+D R L Sbjct: 354 TRDFLEKNEEKFDKVILDPPRAGIGKDI-ELIGKALPKRIVYISCNPTTLARDSRYLSNK 412 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLL 372 GF ++ ++ FDMFP T H EV+ + Sbjct: 413 GFSLKALRAFDMFPDTHHVEVVAIF 437 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/392 (27%), Positives = 161/392 (41%), Gaps = 34/392 (8%) Query: 9 GRCRSCQWIMQPIPEQL---SAKTADLKNLLADFPVEEWCAPVSGPEQ-GFRNKAKM--- 61 G C C+W+ QL K D + F + ++ P+ +RNK + Sbjct: 88 GSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNKVEFSCS 147 Query: 62 ---------VVSGSVEKP---LLGMLHRDGTPE---DLCDCPLYPASFAPVFAALKPFIA 106 + S + KP LG H G E DL C L V L+ F Sbjct: 148 NMRYLLQSEIDSDQLAKPKTFALG-FHAPGNFEKVLDLDTCYLAKECMNRVLNVLRDFAI 206 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR-SDTKLAQLRKALPWLHEQLPQL 165 GL PY G L+ ++L S+ +M+ V D L Q K L +P+ Sbjct: 207 ERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALMQALK--ERLEAAMPEQ 264 Query: 166 KVITVN-IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 ++ +N + + GE E ++ + ER D+ I SFFQTN A LY Sbjct: 265 QMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAETLYDQ 324 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 P ++DL+CG G L+ A Q GIE+ A+ A+ +A GL+ Sbjct: 325 IIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTV 384 Query: 285 FQALDSTQFATAQGDV-----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 F D F Q + P +++ +PPR G+ D + + P I+Y SCN + Sbjct: 385 FFQADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNL 444 Query: 340 AKDIRELP--GFRIERVQLFDMFPHTAHYEVL 369 A+D +E+ G+R+ Q DMFP T H E + Sbjct: 445 ARDGKEIAARGYRMTSAQPVDMFPQTNHIETV 476 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/191 (36%), Positives = 112/191 (58%), Gaps = 10/191 (5%) Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 Q+ L E+ N + + P SFFQ N A LY A ++++ + + DL+ GVG L Sbjct: 238 QEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLE 297 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF------QALDSTQFATAQGDVPELV 304 A+ Q G+EI EAI A+ +A + L + +F + L+ Q T + + + Sbjct: 298 IASRKAQTLGVEIVEEAIEDARINAQKNKL-QARFICGKSEEILEKIQ--TDEKIKMDKI 354 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFPHT 363 LV+PPR+G+ K L DYL+ + I+Y SCN T+A+D++ L +++E+V++FD+FP+T Sbjct: 355 LVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFPYT 414 Query: 364 AHYEVLTLLVK 374 +H EV+TLL K Sbjct: 415 SHVEVITLLSK 425 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/377 (25%), Positives = 165/377 (43%), Gaps = 36/377 (9%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 G+C C W + QL K ++NL F ++ P S +RN+ + V Sbjct: 91 GKCGGCLWGLMDYQYQLEFKKKVIENL---FGYDKDIIP-SPKTIYYRNRMDYPIYNKVS 146 Query: 69 KPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 G + P + +C + + FI + + ++ + G L+Y+++ Sbjct: 147 LKEPGKWY-GYIP--IKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTGFLRYLVIR 203 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 E + M+ + K +L + E + L + V+ I E ++ + Sbjct: 204 EGKFTKERMIHIITYKRKKFEELWDFI----ENIKDL------VTSVYWGIREDLGDVSI 253 Query: 189 TEQ-------QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 +E+ + L ER D+ +I P SFFQTN A L ++++ + DL+ Sbjct: 254 SEKLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLY 313 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 GVG F L A ++ GIEI EA+ AK +A+ +D+ A+ P Sbjct: 314 SGVGLFSLQIANEVKKVIGIEIVEEAVEMAKLNAS--------INNIDAEFIASPVEKAP 365 Query: 302 EL----VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 + ++V+PPR G+ +Y+ + P I+Y SCN T +DI +L G++I +Q Sbjct: 366 IIKANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKLKGYKIIDMQPL 425 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP+T H E + L+ K Sbjct: 426 DMFPNTPHIENVILMKK 442 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 180/383 (46%), Gaps = 15/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV---SGPEQGFRNK 58 QC Y +C CQ+ E+L AK +++ L + PV + + +RNK Sbjct: 75 QCIHYT--KCGGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNK 132 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + V E P +G +R T + + DC L P + A + AA ++ ++ Y+ Sbjct: 133 VQFPVQPGPEGPRVG-FYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEK 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RG ++++ + +++ G L +L + + Q + L P L + + + Sbjct: 192 TGRGLVRHVYVRVNRA--GQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKK 249 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G++ L Q L + + SF+Q N A LY A D+ + Sbjct: 250 NNVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRET 309 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG+G L A ++ G E+ +A+ A+++A G+ +F D+ + A A Sbjct: 310 VLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARA 369 Query: 297 QGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 P++V V+PPR+G+ + + D + +MAP ++Y SC+ T+A+D++ G+ + Sbjct: 370 LAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVL 429 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFP TAH E + LL + Sbjct: 430 RKAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 168/384 (43%), Gaps = 22/384 (5%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPEQGFRNKAKMVVS-G 65 A +C C + +P EQL K +K L+ ++ + P+ +R + KM + G Sbjct: 11 ADKCGGCTYQGKPSYEQLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKMEFTFG 70 Query: 66 SVEKP---LLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 + E+ LG H G ++ D C L + + A++ F + YN + Sbjct: 71 NSEREGELKLG-FHEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNKKKHN 129 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDT-------KLAQLRKALPWLHEQLPQLKVITVNI 172 G L+++++ +++ V S L +L +E + L + I Sbjct: 130 GFLRHLVIRSGIRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTVNDKI 189 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 Q GE L + ER D+ +R SFFQTN A LY A + + + Sbjct: 190 QDT----ANGEDIRILYGRDYYMERIMDLDFKVRMGSFFQTNVQAAENLYRYAINSIDNV 245 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 K ++DLFCG G A ++ G++I+ +AI A ++ + + F D + Sbjct: 246 QDKVIFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFE 305 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFR 350 + P++++++PPR G+ + + +PR I+Y SCN +T+ ++ E + Sbjct: 306 VIRNINEKPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFEYNRYN 365 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 I+ ++ FD F T+H E + LL K Sbjct: 366 IKSLKAFDNFFFTSHVEAVALLSK 389 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 169/377 (44%), Gaps = 15/377 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKP 70 C C P EQL K ++ +LL + E ++ P +RNKA V+ GS++ Sbjct: 17 CGGCSMQGLPYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYY-YRNKAHAVLGGSLKGK 75 Query: 71 LLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 ++ + G+ ++ C + + A+++ + + PYN RG L++I+ Sbjct: 76 IVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIAR 135 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 + +DGG ++ ++ + +K + L + P + I NI +++ G+ L Sbjct: 136 RT-ADGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVL 194 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 + +R I P +F+Q N +LY A D + + D +CG G G Sbjct: 195 YGPGYIEDRLMGARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDTYCGTGTIG 254 Query: 249 LHCAT-------PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---G 298 + A M+L G+E A+ A+ +A GL + +F D+ F A+ G Sbjct: 255 IAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAFMLAEAEAG 314 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLF 357 +LV ++PPR G + L + P I+Y SC+ +T A+D++ L + I R+ Sbjct: 315 RSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYLDSAYAIRRIAPV 374 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T E + LL K Sbjct: 375 DMFPFTDGIENVVLLEK 391 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 169/377 (44%), Gaps = 19/377 (5%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQ-GFRNKAKMVV 63 A +C CQW QL+AK +K+ +A E + ++ P G+RNK + Sbjct: 77 ADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPL 136 Query: 64 SGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 G ++ ++ G+ +L CP+ P+ AALK L P+ + R++ Sbjct: 137 -GRRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALK-----QALQPWPIYREQTH 190 Query: 122 ---LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +++ L Q G ++ VL +A WL + V V Sbjct: 191 EPGFRHLGLRIGQRTGEQLITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNR 250 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 I ET++ L + L E V I +FFQ N A A QL T RDW+ + + Sbjct: 251 IFGDETQV-LAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLV 309 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DL+CGVG L A ++ G+E+ S ++ A +A G+ F + ++ Sbjct: 310 DLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYD 369 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQ 355 ++++++PPR+G + + D + P ++Y SC+ T+A+D+ L +++ ++Q Sbjct: 370 QAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQ 429 Query: 356 LFDMFPHTAHYEVLTLL 372 DMFP TAH E + LL Sbjct: 430 PLDMFPQTAHVETIALL 446 >UniRef50_C7H6V0 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Ruminococcaceae RepID=C7H6V0_9FIRM Length = 259 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 8/246 (3%) Query: 135 GMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQAL 194 G ++ ++ + KL + L Q + I +N+ + ++ G L + Sbjct: 10 GQIMVCLVCTRAKLPHAEELCRTLTAQFSDIATILINVNARNTNVILGSETHTLYGPGFI 69 Query: 195 AERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATP 254 + VP+ + P SF+Q N A QLY A ++ + P + DL+CG+G GL A Sbjct: 70 EDTLCGVPVQLGPLSFYQVNTLAAEQLYGIAAEYAQLTPDDLLLDLYCGMGTIGLSMADH 129 Query: 255 DMQLTGIEIASEAIACAKQSAAELG---LTRLQFQALDSTQFAT---AQGDVPELVLVNP 308 +L G+EI EAI AK +AA +G + +F D+ + A+ A+G P++V+++P Sbjct: 130 CRELIGVEIVPEAIESAKANAARMGDAIAAKSRFFCADAGKAASQLAAEGLHPDVVMLDP 189 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFRIERVQLFDMFPHTAHY 366 PR+G + + TM+PR ++Y SCN T A+D + E G+R E+VQ D+FP T H Sbjct: 190 PRKGCDEATLSAVVTMSPRRVVYVSCNPSTAARDAKWLEEHGYRAEKVQPVDLFPRTRHV 249 Query: 367 EVLTLL 372 E + L Sbjct: 250 EAIVSL 255 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 113/395 (28%), Positives = 186/395 (47%), Gaps = 31/395 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWC--APVSGPEQ-GFRNK 58 CA + G C C PEQL+ K A + L V++ AP P+ G+RNK Sbjct: 73 CAHF--GTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE---------DLCDCPLYPASFAPVFAALKPFIARAG 109 + + LG+ R+ TPE D+ C L A + A++ F A G Sbjct: 131 MEFAFEQREDGLHLGL--REPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATG 188 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLH-EQLPQLKVI 168 + YN A + G +++++ + + G +M+ + D + L K + L ++ P+L Sbjct: 189 VPAYNPATESGFWRHLVIRHAAA-GEVMVHLITARDERKDNLIKDMAELFLQRFPELASF 247 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERF----NDVPLWIRPQSFFQTNPAVASQLYAT 224 + + + GE +Y + ER +V + P +FFQTN AS+L+ T Sbjct: 248 VHSTRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGT 307 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 ++ + DL+CG G G++ A ++ G E + EA+ A++SA GLT Sbjct: 308 VAEFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCS 367 Query: 285 FQALDSTQ----FATAQGD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 F + Q FA GD VP++V+V+PPR G+ + + L + I+ SC+ T Sbjct: 368 FVSGSLEQGIPGFA-GSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVSCDPAT 426 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLL 372 +A+D++ L + + RV+ DMFPHT H E + LL Sbjct: 427 LARDVKRLADRYHVTRVRAVDMFPHTHHIETVALL 461 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 167/375 (44%), Gaps = 9/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSV 67 A +C C + EQL K A +K LL F E + P +R+K + Sbjct: 44 AKKCGGCDYQGVEYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLY-YRHKVHAAFDCTR 102 Query: 68 EKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 ++ +R T + D+ C + + +K + + Y+ G L+++ Sbjct: 103 RGQIVAGAYRKNTHDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHV 162 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 L+ + + G +M+ VL S L + L ++ P + + +N+ +++ G+ Sbjct: 163 LVRKGYATGQIMVVLVLASPI-LPSKNNFVKALRKKHPNITTVVLNVNDKKTSMVLGDRN 221 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 I L + + ++ I P SF+Q NP LY A + + D +CG G Sbjct: 222 ITLYGKGFIEDKLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTG 281 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDVPE 302 G+ A ++ G+E+ +AI A +A + ++F D+ +F +G+ + Sbjct: 282 TIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQKGEKAD 341 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMF 360 +V+++PPR G + + ++P ++Y SC +T+A+D++ L G+ ++R +D F Sbjct: 342 VVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDCF 401 Query: 361 PHTAHYEVLTLLVKQ 375 P T+H E + L Q Sbjct: 402 PFTSHIETVCCLTFQ 416 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 18/364 (4%) Query: 24 QLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKM---VVSGSVEKPLLGMLHRD 78 QL+ K ++ L V+ AP G E G+RNKA++ +++G +E +R Sbjct: 103 QLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGF----YRR 158 Query: 79 GTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGM 136 G+ + D + + + G++ Y K+G +++I+ + Sbjct: 159 GSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHEL 218 Query: 137 MLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAE 196 M+ ++ + KL L +LP+LK + NI ++ G+ + + + + Sbjct: 219 MV-VIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHD 277 Query: 197 RFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDM 256 + I P SF+Q NP S LYA A + P + D + G+G L A Sbjct: 278 QLMGKDFVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVK 337 Query: 257 QLTGIEIASEAIACAKQSAAELGLTRLQFQALDS-TQFA--TAQGDVPELVLVNPPRRGI 313 ++ G+++ AI A+++A +T +F D+ Q A +G P +V V+PPR+G+ Sbjct: 338 KIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADEGLKPNVVFVDPPRKGL 397 Query: 314 GKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE-RVQLFDMFPHTAHYEVLT 370 + L D + M P +Y SCN T+A+D ++ GF IE VQ D FP T H E +T Sbjct: 398 TQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVESIT 457 Query: 371 LLVK 374 + K Sbjct: 458 VFKK 461 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/325 (26%), Positives = 157/325 (48%), Gaps = 10/325 (3%) Query: 55 FRNKAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +RNK+++ V G V L + R D+ C ++ + +A+ G P Sbjct: 129 YRNKSQVPV-GFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEP 187 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 Y+ +G++++I+ + + G +M+ V + ++ + + L EQL +L I NI Sbjct: 188 YDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKE-RMPFKEEIVRELVEQL-ELTSIVQNI 245 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 P ++ G+ L + + + + + I +SF+Q NP LY A D Sbjct: 246 NPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAELT 305 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + + D +CG+G L A + G+EI +AI A+ +A L F+ + + Sbjct: 306 GEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEE 365 Query: 293 FATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-- 347 A G V ++++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ L Sbjct: 366 VIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDG 425 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLL 372 G+ ++VQ DMFP T H E +T+L Sbjct: 426 GYVAKKVQPVDMFPMTTHIEAVTVL 450 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 168/379 (44%), Gaps = 27/379 (7%) Query: 10 RCRSCQWIMQPIPEQLSAK----------TADLKNLLADFPVEEWCAPVSGPEQ-GFRNK 58 +C CQ + P+QL K LKN+ D VS P++ +RNK Sbjct: 78 QCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISID-------PCVSSPQELEYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 ++ V + +G+ R+ P D C ++ V+ ++ + ++ + PY+ Sbjct: 131 IQLPVMMKPDGLTVGLYARNSHTIIPVD--HCLIHCEQGENVYQSVLKLLKQSDIAPYDE 188 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 +G L++ LL +S L ++ S K L+ + + P++K + NI Sbjct: 189 RTGKGVLRH-LLIKSALQTSESLVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINRK 247 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G L + + E D I P +FFQ NPA A +Y K Sbjct: 248 RDNVILGTDWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTK 307 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 D FCGVG L A + GIE +AI A +A ++ F + Sbjct: 308 TFLDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQ 367 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 + D+ ++V +NPPR+G + L + L + P I+Y SC+ T+A+D++ L G++IE+ Sbjct: 368 SLKDI-DVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQHGYQIEQ 426 Query: 354 VQLFDMFPHTAHYEVLTLL 372 V FDMFP TAH E + L Sbjct: 427 VTPFDMFPQTAHVETVVKL 445 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 172/390 (44%), Gaps = 36/390 (9%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLA-----DFPVEEWCAPVSG-PE-QGFRNKAK 60 AG C C + AKT +++ A D PV PV G P+ +RNK + Sbjct: 76 AGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVH----PVLGAPDINRYRNKVQ 131 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V G+ E L G + DC L P + A + +AG T Y+ Sbjct: 132 LPV-GTDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGATSYDEES 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP---WLHEQLPQ---LKVITVN 171 G ++++ L + G +L F+L +ALP + E+L + L + VN Sbjct: 191 HTGLVRHLFLRQGWHSGQRLLCFILNG--------RALPDEQRICEELQREFDLTTVLVN 242 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 ++ G + + + V L + F+Q N A LYA AR + Sbjct: 243 ENTARTNVILGPHTHTVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTYAAL 302 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT--RLQFQALD 289 P + DL+CG+G GL +L G+EI +A+ AK +AA LGL+ R F+ D Sbjct: 303 QPEDFLLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRCQD 362 Query: 290 STQFATAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + A P++++V+PPR+G + MAPR ++ SCNA T A+D R L Sbjct: 363 AGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWL 422 Query: 347 P--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R VQ D+FP T H E + LV+ Sbjct: 423 TEHGYRAMEVQPVDLFPRTRHVECVVKLVQ 452 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 11/376 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSV 67 A +C CQ +QL K D + LL F P +RNK + V Sbjct: 9 AKKCSGCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDP-YNYRNKVQAVFRSDR 67 Query: 68 EKPLLGMLH---RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 ++ ++ R+G + C L + ++ + L PY+ +RG L++ Sbjct: 68 NGRIISGVYQSSRNGIV-GIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRH 126 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 +L+ ++ G +++ V ++ + + L ++ P + +T ++ ++ GE Sbjct: 127 VLVRVGKNTGEILVTLV-GGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGEN 185 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L + + + I P SF+Q N A +LY A + + D + G+ Sbjct: 186 NEVLYGEGYITDILCGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGI 245 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR-LQFQALDSTQFATAQ---GDV 300 G G+ + Q+ GIE + A+ A ++ E GLTR + F D+ +F + G Sbjct: 246 GTIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKLGTH 305 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLFDM 359 + V+++P R G + + L +AP I+Y SCN T A+D++ L + + +Q FDM Sbjct: 306 YDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDM 365 Query: 360 FPHTAHYEVLTLLVKQ 375 FPHT H E + + ++ Sbjct: 366 FPHTRHVECVVSMSRK 381 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 168/370 (45%), Gaps = 9/370 (2%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKP 70 C C + P +L K +K L D EE S + +RNK + + + Sbjct: 79 CGGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDS 138 Query: 71 --LLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 +LGM ++ E D +C L F + A+ F+ L G L++++ Sbjct: 139 PIMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLI 198 Query: 127 LTESQSDGGMMLRFVLRSDTKL--AQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 + + + G +M+ V + ++ L L + ++ + A++ + Sbjct: 199 IRYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKI 258 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 I ++ + E+ D+ + P SFFQ N A LY+ A + + K ++DL+ G Sbjct: 259 NIIFG-KEYITEKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYSGT 317 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELV 304 G G A + GIEI EA+ A +SA E GLT F A D + + ++ +++ Sbjct: 318 GTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIENRKEMVDVI 377 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 +V+PPR GI + + + + + I+Y SCN +T +DI+ L G+++ +++F+ FP Sbjct: 378 IVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQNGYKLITLKIFNQFPR 437 Query: 363 TAHYEVLTLL 372 T H E + LL Sbjct: 438 TVHCEAVALL 447 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 171/384 (44%), Gaps = 30/384 (7%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW------CAPVSGPEQGFRNKAKMVV- 63 C C + +QL K + N++ ++E+ +P++ G+RN+ Sbjct: 101 CGGCLYQSMGYQQQLEMKKKQVLNMINK-EIKEYQFDGIKASPIN---IGYRNRMDYTFG 156 Query: 64 SGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 G + PL LH+ D+ DC + F + + + + YN + G Sbjct: 157 DGYIGGPLECGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKIKHTG 216 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 L+ +L+ +++ +M + S QL L L +L +L ++ + +H I Sbjct: 217 YLRNLLIRKAKKTNEIMYCLITSS-----QLTIDLNELKNKLLELPLMGNLVSIIH-CIF 270 Query: 181 EGETEIY-------LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + T+I L + E + I P SFFQTN A LY T R+++ Sbjct: 271 DDITDIVGYNKMEILYGNDYITEELLGLHFKITPMSFFQTNSLGAEVLYQTVREYITTTK 330 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD-STQ 292 ++DL+CG G + ++ G+E+ +AI AK +A LT +F+ D + + Sbjct: 331 CDIIFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVNNE 390 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPGFR 350 Q + PEL++++PPR GI + + IIY SC T+ +D I E G++ Sbjct: 391 LDQLQENRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLIILEQNGYK 450 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 ++ + L DMFP+T H E + LL K Sbjct: 451 VKNITLVDMFPNTPHIETVCLLKK 474 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 169/372 (45%), Gaps = 13/372 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA-PVSGPE-QGFRNKAKMVVSGSVE 68 C C W+M EQL K L L + F ++ P P+ + +RNK M V + + Sbjct: 78 CGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQ 137 Query: 69 --KPLLGMLHR-DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 K GM R + C +P F + +L F +A + PYN +G+L++I Sbjct: 138 TGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHI 197 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 SDG +L ++ KL + L + PQ+K I NI ++ G+ Sbjct: 198 GF-RCNSDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINRQKENVILGKET 256 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 L + L + + I +SF+Q N + + +D+V V + D +CG+G Sbjct: 257 KLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVNSNNV--ILDAYCGIG 314 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF--QALDSTQFATAQGDVPEL 303 GL A ++ +E +AI AK++A GL + F ++ A + P+ Sbjct: 315 AIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAVLIKEKPDT 374 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDMF 360 ++++PPR G+ + + + + IIY SC T+A+D+ L +++ +Q FDMF Sbjct: 375 IIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYKVVFLQPFDMF 434 Query: 361 PHTAHYEVLTLL 372 P+T H E L +L Sbjct: 435 PNTWHIECLAVL 446 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 168/367 (45%), Gaps = 16/367 (4%) Query: 22 PEQLSAKTADLKNL---LADFPVEEWCAPVSGPEQ--GFRNKAKM---VVSGSVEKPLLG 73 P QL AK A +K + L FP P G + +RNKA++ V G +E Sbjct: 135 PAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQLETGFFR 194 Query: 74 MLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSD 133 P + + + + + + + G + Y+ ++G++++I++ Sbjct: 195 KNSHQLVPVE--NFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVKRGHYS 252 Query: 134 GGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQA 193 G +ML V+ A+ K + L + +P L + +N ++ G T L Q Sbjct: 253 GQVMLILVVNGKGLPAE-DKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLLWGQPV 311 Query: 194 LAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCAT 253 ++ + I P SF+Q N A LY A + + + D +CG+G L A Sbjct: 312 YQDQMLGLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIGTISLALAR 371 Query: 254 PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVNPPR 310 Q+ +EI EAI A+ +A GL+ + FQA + + A+G ++ +V+PPR Sbjct: 372 QAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQAEGIHFDVAVVDPPR 431 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEV 368 +G+ L +AP I+Y SCN T A+D + L G+ ++ VQ D+FP TAH EV Sbjct: 432 KGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAGYELQWVQPVDLFPKTAHIEV 491 Query: 369 LTLLVKQ 375 + LL ++ Sbjct: 492 VGLLERK 498 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 172/385 (44%), Gaps = 22/385 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAK---TADLKNLLADF---PVEEWCAPVSGPEQ--G 54 C +Y +C CQ P QL+ K D + F V+E G E Sbjct: 78 CPVY--AQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETL----GAEDPWH 131 Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +RNK ++ + L + GT D+ DC + + + ++ ++ + + Sbjct: 132 YRNKMQVPAAQGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPA 191 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 +RG +++I+ G +M V ++ ++ L+ L +++P + N+ Sbjct: 192 LEEDARRGIVRHIMGRVGVQTGEVMAVLVT-NEPQVPHLKDLTALLRQEIPGFTTLVQNL 250 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 H ++ G + + +R I P SFFQ N A +LY TA + Sbjct: 251 NTRHTNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYETALQYAALT 310 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + + D +CG G L A + GIEI AI A+Q+A + ++ + F D+ + Sbjct: 311 GKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAK 370 Query: 293 FA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELP 347 QG P++V+++PPR G + + + ++ + P+ ++Y SCN ++A+D I Sbjct: 371 EMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRDK 430 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLL 372 GF + +VQ DMFPHT+H E + LL Sbjct: 431 GFVVRKVQPVDMFPHTSHVETVCLL 455 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 15/376 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLL--ADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 C C + Q K D++ L+ A V ++ + +RNK + + Sbjct: 9 CGGCSLLKLKPSMQADKKKKDVEVLVEKAHLKVRVGDVHMAKNDTHYRNKVIVGFAKDKG 68 Query: 69 KPLLGML----HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 K G+ HR E+ C + P + + + L YN G L++ Sbjct: 69 KVYSGLYASHSHRVVKTEN---CIMQPKLVNEIINKITELVGSMKLELYNERTGTGLLRH 125 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 +L+ +M+ FV S + + L + PQ+K I NI P +I+ + Sbjct: 126 VLIRWGHKTDEVMVVFVT-SQKMFPSRKNMVRVLTSEFPQIKTIVQNINPRKTSIVLQDE 184 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 I L + + + + SF+Q + LY A+ + + D +CGV Sbjct: 185 AIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTVLDTYCGV 244 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVP 301 G GL ++ G+E+ +AI AK +A + + ++F A+DST+F A + Sbjct: 245 GTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQARKYHNRY 304 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDM 359 + ++++PPR G K + + + PR I+Y SC+ +T +D+ + G+ +++L D+ Sbjct: 305 DAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGYVTNKLELVDL 364 Query: 360 FPHTAHYEVLTLLVKQ 375 FP+T H E + +L K+ Sbjct: 365 FPYTDHIESVCVLEKK 380 >UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Coriobacteriaceae RepID=C8WNQ3_EGGLE Length = 438 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 99/400 (24%), Positives = 167/400 (41%), Gaps = 39/400 (9%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKP 70 C +CQ + P +QL++K + L AD P+ G ++ + + K+V + + Sbjct: 28 CGACQHVGVPYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRK 87 Query: 71 LLGMLH------------RDGT----PEDLCDCPLYPAS---FAP-------------VF 98 L G + RDG P C +Y A P + Sbjct: 88 LQGSANARAGKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRII 147 Query: 99 AALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWL 158 ++ + R G+ PY G L++ ++ + G +++ V A R L Sbjct: 148 RTVRDLMPRFGIEPYREDSGTGFLRHAVVRVGHTSGEILVTLVTNGRAFPAS-RAFCREL 206 Query: 159 HEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA 218 + P++ + N+ ++ GE E L + ++ + I QSF+Q N Sbjct: 207 VRRCPRITSVVQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQT 266 Query: 219 SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDM-QLTGIEIASEAIACAKQSAAE 277 LY A D + D +CG G GL A Q+ G++ + A+ A+++A Sbjct: 267 EVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKH 326 Query: 278 LGLTRLQFQALDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC 334 G+ +F D+ F A GD +++L++PPR G + T+APR I+Y SC Sbjct: 327 NGVENARFAVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRRIVYISC 386 Query: 335 NAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 N T +D+ L G+ + VQ DMFPHT H E + L+ Sbjct: 387 NPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALV 426 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 104/403 (25%), Positives = 179/403 (44%), Gaps = 42/403 (10%) Query: 9 GRCRSCQWIMQPIPEQLSAKT---ADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVV 63 G C C+W P EQL K+ AD + +E P+ G E +RNK + Sbjct: 80 GACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEH-TEPIVGCEDPWHYRNKVEFTF 138 Query: 64 SGS--VEKPLLGMLHRDGTPEDLCDCPLYPASF---------------APVFAALKPFI- 105 S + + L L + + ++LC + A P+ + ++ ++ Sbjct: 139 SKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLN 198 Query: 106 ----ARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLR-KALPWLHE 160 AR PY R + LL + + GG+M+ T+ +LR + L L E Sbjct: 199 DYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTE--ELRVQLLEALRE 256 Query: 161 QLPQLKVITVNIQ-PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 + PQ+ + + + ++ + ++Y + + E + + I P+SF+QTN A Sbjct: 257 RFPQITSLYYMVNTKFNDSLADLPAQLY-SGAPYIEENMHGLRYRIGPKSFYQTNSRQAE 315 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 +LY R++ + + ++DL+ G G + A + GIE EA+ A + + G Sbjct: 316 RLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNG 375 Query: 280 LTRLQFQALD-----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC 334 +T F A D + F A G P++++ +PPR G+ P+ + + AP+ I+Y SC Sbjct: 376 ITNATFYAGDMKAILTDDFVAAHGR-PDVLVTDPPRAGMDAPVVEVILRAAPQRIVYVSC 434 Query: 335 NAQTMAKDIRELPG---FRIERVQLFDMFPHTAHYEVLTLLVK 374 N T A+D+ L +R + DMFPHT H E + LL K Sbjct: 435 NPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSK 477 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 16/329 (4%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGT----PEDLC--DCPLYPASFAPVFAALKPFIARA 108 +RNKA+ + E ++ ++ GT P C PL + L + Sbjct: 126 YRNKAQFPLGSDNEGRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNY---- 181 Query: 109 GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVI 168 LT Y+ G L+++++ +L FV R D K +L++ L ++P+LK + Sbjct: 182 DLTVYDEKTHTGLLRHLVVRVGICTNQALLIFVTR-DKKFKELQEIARKLMTEIPELKGV 240 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 NI P ++ G+ + + + + I P SFFQ N +LY T R + Sbjct: 241 LQNINPRRTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKY 300 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF--- 285 + + D +CG G G++ A + GIE+ AI A+++AA G+ F Sbjct: 301 AGLSGQETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKG 360 Query: 286 QALDST-QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + D + + P++++ +PPR+G+ K + + P I+Y SCN T+A+D++ Sbjct: 361 KVEDKLPELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLK 420 Query: 345 ELPG-FRIERVQLFDMFPHTAHYEVLTLL 372 E+ + I VQ D+FP T H E + L Sbjct: 421 EIKACYDINEVQPVDLFPQTYHVECVVKL 449 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 179/378 (47%), Gaps = 21/378 (5%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQG------FRNKAKMVVS 64 C CQ EQL+ K + +++ L F + P G +RNK + V Sbjct: 81 CGGCQLQHLDYQEQLTYKRSVVESAL--FKIGGLKGVEVLPTLGMRNPWHYRNKIHLQVK 138 Query: 65 GSVEKPLLGMLHRDGTPEDLC-----DCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 + + LG + +G+ E C L V A L+ I LTPY+ KR Sbjct: 139 EAKGRIKLG-FYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPYHWGEKR 197 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+++++ + G M+ V + A+ + + Q P++ + NI I Sbjct: 198 GLLRHVMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQ-PKIVSVIRNINRNPGRI 256 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE + ++ + + N + I SF+Q N +LY A+++ + + + D Sbjct: 257 VLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQGHERVID 316 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF--QALDSTQFATAQ 297 +CG+G L+ A +++ G+EI A+A AK++A G+T +F A++ A+ Sbjct: 317 AYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPRMAK 376 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLS-TMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 P++V+++PPR+G K + +S + PR I+Y SC+ T+A+D+ L G++ +V Sbjct: 377 DLKPDVVVLDPPRKGCEKEVLTAISESKVPR-IVYVSCDPATLARDLGVLDKLGYQTLQV 435 Query: 355 QLFDMFPHTAHYEVLTLL 372 Q DMFP T H E + L+ Sbjct: 436 QPVDMFPWTYHVECVVLM 453 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 42/380 (11%) Query: 2 QCALYDAGRCRSCQWIMQPIP--EQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKA 59 +C ++ G+C C I+Q I QL K L+ +L VE +P G RN+ Sbjct: 61 RCKVF--GKCGGC--ILQHINYNSQLEFKKEKLRKILGR-EVEIIPSPRI---FGHRNRI 112 Query: 60 KMVVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V+ + +G + + D+ +CP++ + L+ +I ++ + + Sbjct: 113 DLAVTVNA----IGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIRE 168 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSD-----TKLAQLRKALPWLHEQLPQLKVITVNI 172 G L+Y++L E + G +M+ FV + T ++ W +I Sbjct: 169 DSGFLRYMVLREGKFTGEIMVNFVTKEGELPDPTSYFDFADSIYW-------------SI 215 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + G+ E Y ++ + E + V I P SFFQTN A L T +V Sbjct: 216 NRSKSDVSYGDIEKYWG-KEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVEGE 274 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 V D++ GVG FG++ A M++ G + + AI A ++A E+ +F + Sbjct: 275 KVV---DMYSGVGTFGVYLAKKGMKVVGFDSNAFAIEMANKNA-EINNVEAEFFVASDRE 330 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIE 352 D V+V+PPR G+ L L+ P I+Y SCN +T +I +L + IE Sbjct: 331 VDIKGFDT---VIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLNNYIIE 387 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 + DMFPHT H E++ L Sbjct: 388 ELIALDMFPHTPHIELVGKL 407 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 174/381 (45%), Gaps = 18/381 (4%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLA-----DFPVEEWCAPVSGPEQGFRNKAKMV 62 A +C CQ EQL K + + L D PV + P + +RNKA++ Sbjct: 80 AAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMG-MQDPWR-YRNKAQVP 137 Query: 63 V---SGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V +G+V R DL C + + V ++ + + + Y + Sbjct: 138 VGLENGTVRAGFYEK--RSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREHK 195 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G +++IL S + +++ V + +L + ++ + L + +P L I NI Sbjct: 196 GLVRHILARTSFTTEEVLVAIVT-NGRQLPKKQEVVQQLKDSIPNLCGIVQNINTRKGNT 254 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G E+ L + L E+ ++ + +SFFQ NP LY A ++ + ++D Sbjct: 255 ILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVFD 314 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---A 296 L+CG+G L A ++ G+E A+ A+++A + +F + Sbjct: 315 LYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLFK 374 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 QG ++V+V+PPR+G + L ++ M P+ I+Y SCN T+A+D++ L G+ Sbjct: 375 QGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQNGYNPIEA 434 Query: 355 QLFDMFPHTAHYEVLTLLVKQ 375 Q DMFPHT+H E + LL ++ Sbjct: 435 QPVDMFPHTSHVETVVLLERK 455 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 164/383 (42%), Gaps = 30/383 (7%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ----GFRNKAKMVVSGS 66 C CQW+ QL +KT +K L + E G+RN+ + + Sbjct: 76 CGGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTFQEN 135 Query: 67 VEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 + L + D+ CP+ P F + + + + + Y+ K+G LK+++ Sbjct: 136 NKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKHLV 195 Query: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP---VHM------ 177 + S S M+ V ++ LP+ E++ Q N P +H+ Sbjct: 196 IRRSFSKNQTMVIIVTNTE--------YLPY-EEEIKQF--FQQNFHPYSLIHLMNSSDS 244 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH- 236 ++ G + L E L E F+D I P SFFQ N V +L ++ + K Sbjct: 245 VVLRGPYKTLLGEG-VLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDA 303 Query: 237 -MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 M DL+ GVG F ++ + + +E + ++ A ++ + F S + Sbjct: 304 TMLDLYSGVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYLM 363 Query: 296 AQGDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + V+++PPR+G+ K LS+MA + IIY SC+ T A+D+ GF ++ Sbjct: 364 KNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLK 423 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ FDMFPH+ H E + +L K Sbjct: 424 SVQPFDMFPHSYHIENVGILEKN 446 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 166/374 (44%), Gaps = 15/374 (4%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQGF--RNKAKMVVSGSV 67 C CQ + +QL+ K + LL PV+ P+ G + F RNK V Sbjct: 182 CGGCQLLDMEYAKQLAFKQKQAEELLKGLCPVK----PIIGMKDPFHYRNKVHAVFDRDK 237 Query: 68 EKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 + ++ ++ + T + C + + ++ + + Y+ G L+++ Sbjct: 238 KGNIISGIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHV 297 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 L+ + S G +M+ V S + L E+ P++ I NI +++ G+ E Sbjct: 298 LIRKGFSTGEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGDKE 356 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 L + + + I +SF+Q NP LY A + + D +CG+G Sbjct: 357 HVLYGKGYIVDELCGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCGIG 416 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPE 302 G+ + ++ G+E+ +A+ A +A G+ ++F D+ +F QG+ + Sbjct: 417 TIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGEKAD 476 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMF 360 +V+++PPR G + D + + ++Y SCN +T+A+D+R + G+R L DMF Sbjct: 477 VVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYRAAEAWLVDMF 536 Query: 361 PHTAHYEVLTLLVK 374 P T H E + LL K Sbjct: 537 PGTVHTESIVLLQK 550 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 109/382 (28%), Positives = 167/382 (43%), Gaps = 45/382 (11%) Query: 8 AGRCRSCQWIMQPIPEQLSAKT---ADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVS 64 AGRC C P EQL+ K A+ + +A EEW AP++GPE G+R +A++ V Sbjct: 94 AGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVR 153 Query: 65 GSVEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + L + R +D+ +CP+ P+ L + R K Sbjct: 154 WDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLS--------KPQA 205 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLR------KALPWLHEQLPQLKVITVNIQPV 175 L ++ L S ++ S+ L L+ +A WLH + QPV Sbjct: 206 LGHVELFSGSSLAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGE--------GEPQPV 257 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A G Y EQ D+ L RP F Q N V + A A +W++ + Sbjct: 258 DDAQSLG----YHLEQW-------DLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTADE 306 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DLFCG+G F L A ++ +E + A +AA L +F D +Q T Sbjct: 307 RVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLT 366 Query: 296 AQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 G+ VL++PPR G + + L+ + + ++Y SCN T+A+D EL G+R Sbjct: 367 DAEWIGNGFSAVLLDPPRDGAFE-VVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYR 425 Query: 351 IERVQLFDMFPHTAHYEVLTLL 372 ++R + DMFP TAH E + L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 173/386 (44%), Gaps = 37/386 (9%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQ--GFRNKA 59 A RC SCQW P QL AK ++ L A+ PVE PV + G+RNK+ Sbjct: 85 AERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVE----PVIAQPRPFGYRNKS 140 Query: 60 KMVVSGSVE-KPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + +P++G +D P D C P+ + P+ AA + I G + Y+ Sbjct: 141 TFPIGRDARGEPVIGYYQKDSHRIVPLDAC--PVQDSRLDPLLAAARELIRTQGWSIYDE 198 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 RG L+++ L + G +L FV+ T L+ ++ A L ++ L + +N Sbjct: 199 KHHRGALRHLGLRIGERTGQRLLTFVVNGQT-LSGIKPAAQALMDRFADLVGVCLNTHTE 257 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQ---TNPAVASQLYATARDWVRQL 232 + G L Q + E + I P +FFQ + + ++L A D + Sbjct: 258 RGNTIFGPQTRCLAGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARGADATAE- 316 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + + D +CG+G L A + GIE ++ A+Q+A G+ +F A Sbjct: 317 --QTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLA----- 369 Query: 293 FATAQGDVPEL----VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 T + +P+L V+V+PPR+G + + + P ++Y SCN T+A+D++ L Sbjct: 370 -GTVEALLPDLRADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVA 428 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLL 372 G+ + VQ D+F T H E + L Sbjct: 429 GGYCLVGVQPVDLFAQTHHVECVATL 454 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/384 (25%), Positives = 169/384 (44%), Gaps = 17/384 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEW-CAPVSGPEQ--GFR 56 C +Y+ C CQ + +QL KT L L F E + P G ++ +R Sbjct: 73 CTIYN--ECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYR 130 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + + G+ ++ +L DC + + L + + P Sbjct: 131 AKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQI-PITD 189 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 RK ++ I++ ++ G + + V L QL K L + P++ + VN Sbjct: 190 ERKVLGVRTIMVRRARKTGQVQIIIVTNRQLNLTQLVKELV---KDFPEVVTVAVNTNTA 246 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + GE + Q+++ E + + P++F+Q NP LY+ A + Sbjct: 247 KTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKED 306 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA- 294 H+ D +CGVG G A L G++I EAI AK++A +G ++A + + Sbjct: 307 HLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIP 366 Query: 295 --TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD-IRELPGFRI 351 +G + ++V+PPR G+ L D + T P ++Y SCN T+A+D +R + + + Sbjct: 367 RWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDL 426 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 +Q DMFPHTA E + L+K+ Sbjct: 427 HYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/392 (26%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQGFR 56 CAL+ G C C + PEQL KT +++ L + PV ++ P +R Sbjct: 77 CALF--GDCGGCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLG-MNEPRH-YR 132 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLC--------DCPLYPASFAPVFAALKPFIARA 108 NKA VS + LG L R G+ C C L V A + Sbjct: 133 NKAHFHVSRDSGRLALGFLAR-GSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESL 191 Query: 109 GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVI 168 + Y+ +RG L+ +LL + + G +ML V + R+ L + P + + Sbjct: 192 RVPLYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQNWPGE-REFAERLTAEEPGVVSV 250 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 N+ + + G + A+ E + I P SFFQ NP A + Y AR + Sbjct: 251 IRNVNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEIARLF 310 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ-- 286 + + D + G+G L A+ + G E A+A A+++A G+ ++F+ Sbjct: 311 AGLTGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQG 370 Query: 287 -ALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 D A+G ++ +++PPRRG G + L + PR ++Y SC T+A+D+ Sbjct: 371 AVEDLLPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGR 430 Query: 346 LP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L GF + +VQ DMFP T+H E + L ++ Sbjct: 431 LAELGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 159/363 (43%), Gaps = 10/363 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQ--GFRNKAKMVV 63 A +C CQW QL K + L + + P+ Q G+RNKA + Sbjct: 76 ADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPL 135 Query: 64 SGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S + ++ + + +L CP+ + A +K I + G + YN +G Sbjct: 136 GYSKFGNVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGH 195 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L Q+ G ++L + + +A WL E+ P L + VN + Sbjct: 196 LRHLALRIGQNSGEVLLTLISTTGNITKIKEQAKLWL-ERYPNLVGVLVNKNSEKNNKIF 254 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + + L ERF ++ +RP +FFQ N A L + D + + + D + Sbjct: 255 GNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAY 314 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG+G F L A GIEI+ ++I AK +A + ++F P Sbjct: 315 CGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLNIFP 374 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 ++VL++PPR+G + + L + P IIY SC T+A+D++++ ++I VQ D Sbjct: 375 DIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKICYQNLYKILWVQPVD 434 Query: 359 MFP 361 FP Sbjct: 435 FFP 437 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 21/343 (6%) Query: 45 CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAAL 101 C P S E +RNKA V +G R P D CP+ ++A + Sbjct: 112 CVP-SRNEWRYRNKASFPVRARGRAGDVGFFKRGSHEIVPVD--RCPVICDRANKLYAVV 168 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRS---DTKLAQLRKALPWL 158 K I Y+ G L+++++ ++ ++L V + L L + L Sbjct: 169 KNMINYGRFCCYDEKSNSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHL 228 Query: 159 HEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA 218 E+ P+L+ + VN+ P ++ G + + + L ER + L SFFQ NP A Sbjct: 229 KERFPELRGLVVNVNPDEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQA 288 Query: 219 SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAE- 277 QL+A A +++ +L+CGVG + + +E+ + A+A A+++ Sbjct: 289 EQLFAYAASLAEG---QNLLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESN 345 Query: 278 --LGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 GLT LQ A + A +G + V+V+PPR G K L + ++ ++Y SCN Sbjct: 346 RIEGLTVLQGAAENVVAPADLEG--IDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCN 403 Query: 336 AQTMAKDIREL--PGF--RIERVQLFDMFPHTAHYEVLTLLVK 374 T+A+D L G+ ++ +++FDMFP T H E + LL K Sbjct: 404 PATLARDAALLRDAGYVLDMDSLKVFDMFPQTCHVETVCLLSK 446 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 172/385 (44%), Gaps = 42/385 (10%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQ--GFRNKAKMVVS 64 G C CQ + QL K ++N+L E P+ G E +RNK ++ V+ Sbjct: 75 GSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNKVRLHVA 134 Query: 65 GSVEKPLLGML----HRDGTPEDLCDCPLYPASFAPVFAALKPFIAR-----AGLTPYNV 115 KP+LG+ H G D C + + L I + AGLT ++ Sbjct: 135 WEGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKHAEMLAGLTAVSL 194 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + +++ E S+ ++ ++ + L +P V+ V + Sbjct: 195 RLAAATGETMVVLEGASE-------------HYSRWKRLVDELTAAVPVTTVVRVGAR-- 239 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 G+ E+ E + + + + + SF+Q NP S+LY ++ + Sbjct: 240 ------GKEEVLYGEGH-ITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRE 292 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF-- 293 + D +CGVG L A Q+ GIEI+ EA+A A +AA+ GL+ + F + + Sbjct: 293 RVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVLP 352 Query: 294 -ATAQGDVPELVLVNPPRRGIGKPLCDYL-STMAPRFIIYSSCNAQTMAKDIRELP--GF 349 A+ + +LV+++PPR+G+ + + L PR +IY SCN T+A+D+ L G+ Sbjct: 353 ELLAREGMFDLVVLDPPRQGVKQAALESLVRAQVPR-VIYVSCNPATLARDLGFLSAQGY 411 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 R++ VQ DMFPHT H E + L + Sbjct: 412 RVQEVQPVDMFPHTYHVECVAYLCR 436 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 165/365 (45%), Gaps = 23/365 (6%) Query: 23 EQLSAKTADLKNLLADFPVE--EWCAPVSGPEQ-GFRNKAKM---VVSGSVEKPLLGMLH 76 +QL K + NLL +E E ++ PE+ G+RNKA++ V+G +E +G Sbjct: 89 KQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLE---IGFFR 145 Query: 77 RDGTPEDLCDCPLYPAS---FAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSD 133 R DL + + V A++ + + + Y+ GE++Y+ + S+S Sbjct: 146 RHS--HDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRRSKST 203 Query: 134 GGMMLRFV-LRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQ 192 G MM+ V L D QL + Q+P + + +N P ++ G + + Sbjct: 204 GEMMVILVCLHKD--FMQLPNVAAEV-SQIPGVSGLILNHNPKKTNVILGPKDYLVFGND 260 Query: 193 ALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 + ++ D+ I PQSFFQ N +LY A P + D + G+G GL A Sbjct: 261 QITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLSVA 320 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVNPP 309 + GIE+ +AI AK +A +T ++ + + G ++V V+PP Sbjct: 321 KHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLKTDVVFVDPP 380 Query: 310 RRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFRIERVQLFDMFPHTAHYE 367 R+G+ + P+ I+Y SCN T+ +D++ + + R+ DMFP T H E Sbjct: 381 RKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMFPQTPHVE 440 Query: 368 VLTLL 372 +T+L Sbjct: 441 SVTVL 445 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 175/385 (45%), Gaps = 16/385 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGPEQ--GFR 56 +C ++D C CQ QL K +++ L + + V G +R Sbjct: 75 KCNVFDL--CGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYR 132 Query: 57 NKAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP-YN 114 NK + V + K G+ T DL +C + +K ++ + N Sbjct: 133 NKNQFPVEKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKN 192 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 R++G +++I+ + + G + + FV ++T+ + + L +L +K + +NI Sbjct: 193 PMREKG-VRHIVTRVALATGEIQVVFV--TNTRHLKKQDLLAERVMRLAGVKSVALNINT 249 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +I+ G+ I + ++ + E+ D + +SFFQ NP LY RD Sbjct: 250 EKTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQ 309 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 +++ D FCG G G+ A ++ G++ + I A +A G +F+ D+++ Sbjct: 310 ENVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASEKL 369 Query: 295 T---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 +G P+++ V+PPR G+ + ++ + P+ +Y+SCN T+AKD+ L F+ Sbjct: 370 NEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTKAFQ 429 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 +E +Q DMFP TA E + L ++ Sbjct: 430 VEYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 170/392 (43%), Gaps = 27/392 (6%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPV--SGPEQGFRNK------ 58 G C C+W EQL K + + L E P+ + P Q +RNK Sbjct: 87 GTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNKLEFTCA 146 Query: 59 -------AKMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARA 108 A++ + +++ +G H G + + C L P + A+ ++ + Sbjct: 147 EGRWLTSAEVGTNQPMDQRAVG-FHVPGRFDKVLPIRHCYLQPDPSNAIREAIDAYVLQH 205 Query: 109 GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVI 168 +T YN+ G L+ +++ + + +M+ + D L + +L PQ+ + Sbjct: 206 DMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDNP-ELLNGLMTYLQTLFPQITSL 264 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 + + + + + + E+ + I P+SF+QTN A LY AR++ Sbjct: 265 NYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGPKSFYQTNAQQAYNLYKVAREF 324 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + ++DL+ G G L A + G+E ++A A+ +A G+ F A Sbjct: 325 AGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAG 384 Query: 289 DSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 D T A+ P++V+ +PPR G+ + + L AP I+Y SCN T A+D+ Sbjct: 385 DMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQARDLA 444 Query: 345 EL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L G+ + VQ DMFPHT H E + +L K+ Sbjct: 445 ILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 165/375 (44%), Gaps = 10/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPEQ--GFRNKAKMVVS 64 AG+C C + Q K L+N L +E P+ + G+RN+A + V Sbjct: 78 AGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQ 137 Query: 65 GSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 G R G+ + ++ CP+ + LK + AG YN ++G L Sbjct: 138 ERDNSLKAGFFQR-GSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLL 196 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 + ++L S G ++L V+R D A W+ ++ P+L + +N+QP + G Sbjct: 197 RQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWM-QRWPELVGVVLNVQPKPGNTLLG 255 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 E L + L E F I +FFQ + A L R ++ + + D +C Sbjct: 256 PKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYC 315 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG GL ++L GIE + E+I A+ +A GL F A + + Sbjct: 316 GVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTD 375 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG---FRIERVQLFDM 359 ++L++PPR+G+ +C+ + P + Y SCN T+A+D+ L F + +V FD Sbjct: 376 VLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQRFELTKVVPFDF 435 Query: 360 FPHTAHYEVLTLLVK 374 FP T H E + +L Sbjct: 436 FPQTTHIEAMAILTS 450 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 100/392 (25%), Positives = 171/392 (43%), Gaps = 28/392 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVE-----EWCAPVSGPEQG-FRNKAKM 61 G C C + P +QL K +K L++D E E+ P++ +RNK + Sbjct: 76 GMCGGCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEF 135 Query: 62 VVSGSV-EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + PL +H+ G+ DL DC + F + A + ++ + ++ A Sbjct: 136 SFGDEYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRAT 195 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTK-------LAQLRKALPWLHEQLPQLKVITV 170 +G L+++L+ ++ G +++ V + T+ LA R AL H V+ Sbjct: 196 HKGYLRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHT 255 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV- 229 V + TE+ L E+ + I P SFFQTN A LY TAR+++ Sbjct: 256 KNDSVADVVKNEGTEV-LYGDSYFYEKLLGLKFKITPFSFFQTNSLGAEVLYETAREFIL 314 Query: 230 ----RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACA-KQSAAELGLTRLQ 284 L K ++DL+ G G P + E CA K++AA GL + Sbjct: 315 GDNKDSLNGKTVYDLYSGTGTIA-QLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCK 373 Query: 285 FQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 F A D + + P+ ++++PPR GI + ++Y SC ++A+D++ Sbjct: 374 FIAGDVLKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVYISCKPTSLARDLQ 433 Query: 345 EL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+E++ DMFP+T H E + L+ K Sbjct: 434 IFMDRGYRVEKICCVDMFPNTYHVETVVLMSK 465 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 104/406 (25%), Positives = 176/406 (43%), Gaps = 39/406 (9%) Query: 2 QCALYDAGRCRS--CQWIMQPIPEQLSAKTADLKNLLA-----DFPVEEWCAPVSGPEQG 54 Q +YD ++ C + EQL KT +K L D+ EE V P++ Sbjct: 74 QNVIYDDIERQNGGCNYQYYTYDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVK-PDK- 131 Query: 55 FRNKAKMVVSGSVEK-PLLGMLHRDGTPEDLCDC---PLYPASFAPVFAALKPFIARAGL 110 +RNK + + + P++ LH+ + D+ + L +F ++ F + G Sbjct: 132 YRNKMEFSFGNAAKGGPIILGLHKQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGF 191 Query: 111 TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVI-- 168 Y+ G + +++ +++ +++ V + + K E L L + Sbjct: 192 DFYHRLDHIGFFRNLVIRKAEFTKQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDN 251 Query: 169 --------TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 T N M I E ET +Y ++ L E + I P SFFQTN + Sbjct: 252 FKITGILHTFNDNFSDMVISESETILY--GERDLTEEIFGLKFKISPYSFFQTNSQTVEK 309 Query: 221 LYATARDWVRQLP-VK----HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 LY ++ ++ +K ++DLF G G G + Q+ GIE+ EA+ A ++A Sbjct: 310 LYGKVLTYLEEIENIKIDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENA 369 Query: 276 AELGLTRLQFQALDSTQFAT-----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 + F A D FA G P++++++PPR G+G+ L + II Sbjct: 370 KLNNIQNAHFIAGDV--FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNII 427 Query: 331 YSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SCN +T+ D+ + G+R+ R + DMFP T H EV+ LL K Sbjct: 428 YVSCNPKTLMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 99/372 (26%), Positives = 172/372 (46%), Gaps = 29/372 (7%) Query: 22 PEQLSAKTADLKNLL------ADFPVEEWCA---PVSGPEQGFRNKAKM---VVSGSVEK 69 PEQL KT +K+ L AD V E PV +RNKA++ V+G +E Sbjct: 89 PEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVK-----YRNKAQVPVRRVNGVLET 143 Query: 70 PLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTE 129 + P L D + V AL+ + R L PY+ + G ++ +++ Sbjct: 144 GFFRKNSHNLMP--LEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRR 201 Query: 130 SQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLT 189 G +M+ V + K+ ++ + + + +Q P++ + NI + + G+ L Sbjct: 202 GHYSGQIMVVLVT-TRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLY 260 Query: 190 EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGL 249 Q + ++ I +F+Q N +A +LY TA D+ + D + G+G GL Sbjct: 261 GQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGL 320 Query: 250 HCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ----GDVPELVL 305 A ++ G+E+ EA+ +K++A ++ + D+ + A G P ++L Sbjct: 321 SVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHY-VCDTAENAMKNWLKDGIQPTVIL 379 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR---ELPGFRIERVQLFDMFPH 362 V+PPR+G+ + + I Y SCN TMA+DI+ EL G+ +++VQ D+FP Sbjct: 380 VDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQEL-GYELKKVQPVDLFPQ 438 Query: 363 TAHYEVLTLLVK 374 T H E + LL K Sbjct: 439 THHVETVALLSK 450 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 12/296 (4%) Query: 84 LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR 143 + DC L V + F GLT Y+ +RG L+ ++ E + G +R V Sbjct: 167 IADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFLRNCVIREGRRTGQFQVRLV-- 224 Query: 144 SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPL 203 T +L + E + ++ + EG+TE+ + L E N + Sbjct: 225 --TMPGELDREA--FAEAVDCDGLLWTQFDGLGETTAEGDTEL-IAGSDYLEEELNGMSF 279 Query: 204 WIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEI 263 + P +FFQ N +A +LYA A D+ + ++DL+CG+G GL A +L G+EI Sbjct: 280 RVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYCGIGTVGLTMAPRAGELWGLEI 339 Query: 264 ASEAIACAKQSAAELGLTRLQFQALD---STQFATAQGDVPELVLVNPPRRGIGKPLCDY 320 +AI A +A + +F A D + + P++V+V+PPR G+ + + Sbjct: 340 IEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVDTAGSPDVVVVDPPRAGLSRKVVRR 399 Query: 321 LSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + +P+ ++Y SCN T+A + +L G+ + +V+ DMFP T H E + L + Sbjct: 400 IIDASPKRLVYISCNPTTLAPNGAQLAEAGYVLRKVRPVDMFPQTPHIECVALFER 455 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 171/389 (43%), Gaps = 22/389 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA-----DFPVEEWCAPVSGPEQGFR 56 C Y+ C CQ QL K+ +++ L D P + C P S + G+R Sbjct: 65 SCRWYET--CGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLP-SPVQWGYR 121 Query: 57 NKAKMVVSGSVEKPLLG---MLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 NKA V + G M D P + CPL A ++ L+ + G + Y Sbjct: 122 NKASFPVRRTASGETTGFFKMGTHDIVPIE--TCPLVCDQAAQLYGTLRGLVQDGGFSAY 179 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSD---TKLAQLRKALPWLHEQLPQLKVITV 170 + RG L++I++ S G++ V+ S +A LR +L + P L + + Sbjct: 180 DEKTGRGWLRHIVVRASTYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLAL 239 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 +I P + G+ + + + E L SFFQ N A A++L+ A V Sbjct: 240 SINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVP 299 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 +L+CGVG A +T EI A+ A+++ + LT ++ + + Sbjct: 300 D--GSRTLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPA 357 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PG 348 + + + + ++V+PPR G + L+ + + I+Y SCN T+A+D L G Sbjct: 358 EKLPSDLFEGQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAG 417 Query: 349 FRI--ERVQLFDMFPHTAHYEVLTLLVKQ 375 +++ V+ FDMFP T+H E + LL ++ Sbjct: 418 YQLVTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 170/386 (44%), Gaps = 29/386 (7%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV----SGPEQGFRNKAKMVVSGS 66 C C + +L K +KNL D ++ + + S + +RNK + S Sbjct: 79 CGGCAYQKLAYETELMLKVDMIKNLFKDNSID-YSGDIKINQSPKTKAYRNKMEYTFGDS 137 Query: 67 VEKPLLGM-LHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + L + LHR ++ D C + F + +++ + Y+ + G L Sbjct: 138 KKGGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLL 197 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP---QLKVITV----NIQPV 175 +++++ ++ G +M+ V SD LR L +L++ L K+++V N P Sbjct: 198 RHLIIRKAHRTGEIMVILVTTSDESFDSLRINL-FLNKLLSIDLVGKIVSVYHVINDSPA 256 Query: 176 HMAIMEGETEIYLTE---QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 I+E IY E ++ L FN I P SFFQ N A +LY A D Sbjct: 257 DAVIVEKLNLIYGKEFIKEEMLGLTFN-----ISPFSFFQPNIYTAEKLYQKAFDLANIN 311 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + DL+ G G A TGIEI EAI A ++A + + F D + Sbjct: 312 QSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDVLE 371 Query: 293 FATAQGDVPELVLVNPPRRGIG-KPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 GD ++++++PPR GI K L L +F IY SCN +T ++++E GF Sbjct: 372 EIEKVGDKYDVIILDPPRAGISPKSLEKILKIDTEKF-IYISCNPKTQVENLKEFINQGF 430 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVKQ 375 I+ +++D FP + H E + LL ++ Sbjct: 431 EIKDYEIYDQFPKSRHLEAIALLTRK 456 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 163/376 (43%), Gaps = 21/376 (5%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 GRC C W+ QL K L +L ++ V + F + KM Sbjct: 72 GRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKMEFHFQGR 131 Query: 69 KPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 K LG+ R+ D+ DC + P + +K + + YN ++G LK++++ Sbjct: 132 K--LGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVI 189 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPW-------LHEQLPQLKVITVNIQPVHMAIM 180 + S M+ FV ++++ PW + ++ P++ I + ++ Sbjct: 190 RYAFSTDQFMVIFVTKTES--------FPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVL 241 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 G + L + + E F+ I P +FFQ+N ++ S+L + + DL Sbjct: 242 RGPYKT-LYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDL 300 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300 + G+G F + + ++ +E + A+ K +A +++ D F Sbjct: 301 YAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSGR 360 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFD 358 + ++++PPR G G + ++ ++P I+Y SC+ T+ +D++ L G+ I RV+ FD Sbjct: 361 ADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPFD 420 Query: 359 MFPHTAHYEVLTLLVK 374 MFP T H E LVK Sbjct: 421 MFPQTYHVETAVTLVK 436 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 165/377 (43%), Gaps = 16/377 (4%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWC-APVSGPEQGFRNKAK 60 A +C CQW Q+ +K + + L P+E +P S G+RNKA Sbjct: 86 ADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPAS---LGYRNKAT 142 Query: 61 MVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 +S S + +R G+ ++ CP+ + +K I G + Y+ +K Sbjct: 143 YPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKK 202 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +G+L+++ L Q G M+L + +A WL E+ P L I +NIQP Sbjct: 203 QGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWL-ERYPDLGGICLNIQPEPNN 261 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G+ + + + E+F D+ + +FFQ N A L + + + + Sbjct: 262 RIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLV 321 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D + GVG F L A Q IE+ +++ +++A + + F A Sbjct: 322 DAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLS 381 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR-IERVQ 355 ++P+++L++PPR+G + + P I Y SC T+A+D++ L GF I VQ Sbjct: 382 EIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQ 441 Query: 356 LFDMFPHTAHYEVLTLL 372 D FP TAH E +L Sbjct: 442 GCDFFPQTAHVECAVIL 458 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 171/375 (45%), Gaps = 35/375 (9%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQGFRNKAKMVVSGSV 67 RC CQ I Q S+KTA L L+ E + ++G +R +A++ + Sbjct: 91 RCGGCQQQHADITLQQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRARLALYFQA 150 Query: 68 EKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 ++ L M +R DL D P + A L+P R L+ ++ G ++ + Sbjct: 151 KEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPL--RDCLSRLKAVKRLGHVELV-- 206 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV--HMAIMEGETE 185 Q++ G +L VLR L L A + + ++V + P + + G+ Sbjct: 207 ---QAENGPLL--VLR---HLDPLHPADEQALRDFAEQQGVSVYLAPDADSLTCLHGDEP 258 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 +YL LA P+ F Q N AV Q+ A A W+ P + DLFCG+G Sbjct: 259 VYLVAGLTLA---------FSPRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMG 309 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF--QALD---STQFATAQGDV 300 F L A + G+E + + +++A L+ + F Q L+ + Q AQG Sbjct: 310 NFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQG-- 367 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFD 358 + +L++P R G + + ++ +AP+ ++Y SCNA T+A+D + L GF + V + D Sbjct: 368 FDKILLDPARAGAAG-VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLD 426 Query: 359 MFPHTAHYEVLTLLV 373 MFPHT H E + L + Sbjct: 427 MFPHTGHLESMALFL 441 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 183/396 (46%), Gaps = 33/396 (8%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKAKMVVSGS 66 G C C W P QL K ++NL + E +W + + +RNK ++ S Sbjct: 47 GSCGGCCWQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFSSD 106 Query: 67 -VEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + LG++ + G + +C L FA A++ + + + Y+ + RG L+ Sbjct: 107 KAGRRYLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLR 166 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLA----QLRKALPWLHEQLP-----QLKVITVNIQP 174 + L E G ++ + + A QL+ + L + + Q + + IQ Sbjct: 167 TLTLREGLRTGDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQ 226 Query: 175 VHMAIMEGETEIYLTEQQALAER-----FND----VPLWIRPQSFFQTNPAVASQLYATA 225 + E+ L + E+ FN+ + I P +FFQ N A +LY+ A Sbjct: 227 IAKGRPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQA 286 Query: 226 RDWVRQLPVKHM-WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 + L H+ +DL+CG G G+ A ++ GIE++ E++ A+++ E GL+ + Sbjct: 287 LK-LADLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVT 345 Query: 285 FQALDSTQF--ATAQGDV--PELVLVNPPRRGI-GKPLCDYLSTMAPRFIIYSSCNAQTM 339 ++ D Q A +Q + P++V+V+PPR G+ K + L AP+ ++Y SCN +T Sbjct: 346 IKSGDVGQVLEALSQENSLKPDVVMVDPPRIGLDAKAIKHILDLKAPK-LVYISCNPKTQ 404 Query: 340 AKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 ++ L G++++ VQ D FP T H E +TLL Sbjct: 405 VMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 174/391 (44%), Gaps = 28/391 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQGFRNKAKMVVSGS 66 G C C+W M P EQL AK + + L E P+ G E+ + + K+ S Sbjct: 116 GICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRNKLEFGCS 175 Query: 67 VEKPLLGMLHRDGTPEDLCDC----------PLYPAS--------FAPVFAALKPFIARA 108 ++ L G D + +YP + ++ + Sbjct: 176 NKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCIRDYAIDH 235 Query: 109 GLTPYNVARKRGELKYILLTESQSDGGMML-RFVLRSDTKLAQLRKALPWLHEQLPQL-K 166 ++ +++ + G L+ I++ + + M+L +F + + + L + + PQ+ Sbjct: 236 DISFFDLRAQTGLLRDIMIRSANTGEWMVLVQFKFQEEGDEQRAHGLLQHVADSFPQITS 295 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 ++ V+ Q + + +T + + + E D+ + +SF+QTN A LY+ AR Sbjct: 296 LLYVDNQKCNDTFGD-QTVVVFKGKDHITETMGDLKFKVAAKSFYQTNTNQAYHLYSVAR 354 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 ++ + + ++DL+ G G A ++ GIE +AI AK ++A + QF Sbjct: 355 EFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFY 414 Query: 287 ALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 A D T A+ P++++ +PPR G+ + + AP+ I+Y SCN T A+D Sbjct: 415 AGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCNPATQARD 474 Query: 343 IRELPG-FRIERVQLFDMFPHTAHYEVLTLL 372 ++ L +++ VQ DMFPHT H E + LL Sbjct: 475 LQMLDEQYKVMAVQPVDMFPHTPHVENVVLL 505 >UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8Q1_ATOPD Length = 415 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 182/410 (44%), Gaps = 50/410 (12%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLA------DFPVEEWCAPVSGPEQ--GFRNKA 59 A RC C+W+ P P QL K A ++ LLA + +E P+ G ++ +R+KA Sbjct: 11 ARRCGGCEWLSVPYPIQLKRKQAQVEELLAPLASINNVTIE----PIRGMDEPLAYRHKA 66 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + + GT + + +C + + + + + Y R Sbjct: 67 ATPFAPGKGRTVRSGFYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDR 126 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI-QPVH 176 +G L++ ++ + +ML V+ +L ++ + L + P+L I +N+ Q Sbjct: 127 GKGALRHAVVRCGYATDDVMLVLVVNGQ-RLPHEQEFIAALRKAHPELTSIFLNVNQKRT 185 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV------- 229 AI+ ET + L +++++ + I P SF+QTNP LY A D Sbjct: 186 NAILGRETRL-LWGSTSMSDKLLNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQT 244 Query: 230 ------------RQLPVKHM--WDLFCGVGGFGL---HCATP---DMQLTGIEIASEAIA 269 P ++ D +CG G GL H A ++ LTG++ I Sbjct: 245 GATLTEASTQTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQ 304 Query: 270 CAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 A+++A L +F D+T++ A G ++++++PPR G + +A Sbjct: 305 MARRNARNNKL-EAEFICDDATRYMQALAKDGQNFDVIILDPPRAGSTPAFLKATAQLAQ 363 Query: 327 RFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + I+Y SCN T A+D++ L GF IERV DMFPHT H E + +L + Sbjct: 364 KKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 165/367 (44%), Gaps = 27/367 (7%) Query: 23 EQLSAKTADLKNLL--ADFPVEEWCAPVSGPEQ-GFRNKAKMVVSGSVEKPLLGMLHRDG 79 +QL K + NLL AD + + PE+ G+RNKA++ V K +G + Sbjct: 89 KQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKLDIGFFRKHS 148 Query: 80 TPEDLCDCPLYPAS---FAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGM 136 DL + + V ++ + + + Y+ +GE++Y+ + S++ G + Sbjct: 149 --HDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRRSKATGEI 206 Query: 137 MLRFVLRSDTKLAQLRKALPWLHE---QLPQLKVIT---VNIQPVHMAIMEGETEIYLTE 190 M+ V L K P L E ++ ++K +T +N P ++ G+ + L Sbjct: 207 MVILVC--------LHKDFPQLKEVTKEISEIKGVTSVVLNHNPKKTNVILGKKDYLLWG 258 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + + ++ DV I PQSFFQ N +LY A P + D + G+G GL Sbjct: 259 EPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGLS 318 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVN 307 A + G+E+ A+ A +A G+T ++ + + +G +++ V+ Sbjct: 319 VAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKEGLKTDVIFVD 378 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFRIERVQLFDMFPHTAH 365 PPR+G+ D P+ I+Y SCN TM +D++ + G+ + + DMFP T H Sbjct: 379 PPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFDEIDPVDMFPQTPH 438 Query: 366 YEVLTLL 372 E + +L Sbjct: 439 VEAVAVL 445 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/419 (24%), Positives = 178/419 (42%), Gaps = 55/419 (13%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-----WCAPVSGPEQ-GFRNKAKM 61 AG C C + P QL K +K L+ D +E + P Q G+RNK + Sbjct: 76 AGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYRNKMEF 135 Query: 62 VVSGSV-EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + PL +H+ G+ D+ +C + F + + + +T Y+ R Sbjct: 136 SFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITYYHKLR 195 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKL-----AQL-----------RKALPWLHEQ 161 G L+++L+ ++ G +++ V + T AQ+ A E+ Sbjct: 196 HTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFAGTEEE 255 Query: 162 LPQ---LKVITVNIQPVHMAIME-----------GETEIYLTEQQALAERFNDVPLWIRP 207 L + ++ + + + I+ E L Q E + I P Sbjct: 256 LLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEELLGLRFKITP 315 Query: 208 QSFFQTNPAVASQLYATARDWVRQ-LPV----------KHMWDLFCGVGGFGLHCATPDM 256 SFFQTN A LY TAR+++ LP K ++DL+ G G + Sbjct: 316 FSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAK 375 Query: 257 QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIG-K 315 ++ G+EI EA+ AK++A GL +F A D + + + P+ ++++PPR GI K Sbjct: 376 KVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSIEEKPDYIVLDPPRDGINPK 435 Query: 316 PLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 L + P+ ++Y SC ++A+D+ L G+ +++V DMFP T H E + L+ Sbjct: 436 ALEKIIRYNVPQ-MVYISCKPTSLARDLEVLQARGYEVKKVCCVDMFPSTFHVESVVLM 493 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 169/394 (42%), Gaps = 34/394 (8%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADF------PVEEWCAPVSGPEQGFRNKAKMV 62 G C CQW QL+AK +K L PV + A + P Q +RNK + Sbjct: 79 GVCGGCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILA--ADPNQYYRNKLEYT 136 Query: 63 VSGS---------VEKPL----LGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIA 106 S ++PL LG H+ G + + D C L + A+ F Sbjct: 137 FSNKRWLTQQEIQSDQPLDRYALG-FHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAR 195 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 G + Y+ +G L+ L+ + S G +M+ V + + + + ++ ++ P L Sbjct: 196 EHGYSFYDFRSHQGLLRN-LIVRTTSTGEVMV-IVQFGENQEGPIVHIMDFIQKKFPTLT 253 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLW-IRPQSFFQTNPAVASQLYATA 225 + + + + E++ Q D W I P+SFFQTN A LY T Sbjct: 254 SLQYIVNTKYNETFY-DLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQTV 312 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 D + ++DL+ GVG A Q+ GIE+ AI A+ +A L+ + F Sbjct: 313 ADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSF 372 Query: 286 QALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 D + P++++ +PPR G+ + L +AP IIY SCN T A+ Sbjct: 373 WLGDMKDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQAR 432 Query: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 DI +L + + Q DMFPHT+H E + +LVK Sbjct: 433 DIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 172/389 (44%), Gaps = 37/389 (9%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-------PVEEWCAPVSGPEQ--GFRNK 58 A +C CQW +QL+ K L++ L PV P+ G +Q +RNK Sbjct: 90 ADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPV-----PILGSQQPLRYRNK 144 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ +PL ++ G+ +L CP+ +K + G + Y+ + Sbjct: 145 VTYPMAKPEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDES 204 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R +G L+++ L + ++L V +L L ++ P L + +N+ Sbjct: 205 RHQGHLRHLGLRIGRRTREVLLTLV-SCSRRLPHLESWAERWMQRYPDLVGVCLNLNSAR 263 Query: 177 M-AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 AI ETE+ + + +L E F LWI SFFQ N A + D + + Sbjct: 264 TNAIFGPETEV-IAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEE 322 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF-- 293 + D +CG+G L A + G+E EA+A A+ +A QF + S QF Sbjct: 323 TILDAYCGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNA--------QFNGIASAQFFQ 374 Query: 294 ATAQGDVP-----ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 T + +P ++V+++PPRRG + + + L P I+Y SC+ T+A+D++ L Sbjct: 375 GTVEQVLPTLPPADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLA 434 Query: 347 -PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ + + D FP T H E + L + Sbjct: 435 EGSYRLTQWRAADFFPQTGHVEGVAFLER 463 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 162/345 (46%), Gaps = 28/345 (8%) Query: 50 GPEQGFRNKAKMVVSGSVEK-PLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFI 105 G ++ +RNK + + P++ LH+ + D+ + C L +F + F Sbjct: 123 GNDKEYRNKMEFSFGNEYKDGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFF 182 Query: 106 ARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTK----LAQLRKALPWLHEQ 161 ++ ++ Y+ G L+ +++ + + + + V S + + + ++ L L Sbjct: 183 SKKDISFYHRLTHIGFLRNLVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLS 242 Query: 162 LPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNP------ 215 + LK I I + + EI L ++ + ER D+ + P SFFQTN Sbjct: 243 MG-LKSIIHTINDNKSDSVRADKEIILYGKRDITERLFDLSFNVSPYSFFQTNSFGVEKL 301 Query: 216 ---AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAK 272 + + L+ T D + P+ ++DLF G G G + ++ GIE+ EA+ A Sbjct: 302 YQEVINNLLFITKND---EKPI--VFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKAN 356 Query: 273 QSAAELGLTRLQFQALD---STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFI 329 ++A + G+T +F A D + + P++++++PPR G+G+ L +I Sbjct: 357 ENAIKNGITNAKFIAGDVFEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYI 416 Query: 330 IYSSCNAQTMAKDIR--ELPGFRIERVQLFDMFPHTAHYEVLTLL 372 IY SCN +T+A+D++ E + ++RV DMF +T H E + L+ Sbjct: 417 IYVSCNPKTLAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLI 461 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/387 (26%), Positives = 172/387 (44%), Gaps = 25/387 (6%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGPEQGFRNKAKMV 62 A +C C W Q+ K +++ L + PV P S E +RNK Sbjct: 82 AIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIP-SPCEWRYRNKMVFA 140 Query: 63 VSGS--VEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 + S + LLG+ D + DC L + + ++ ++ + + +K Sbjct: 141 FAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTS---LEKKI 197 Query: 120 GELKYI--LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-------LKVITV 170 LKY L+ G +++ ++ L + + L ++L Q +K I + Sbjct: 198 LTLKYFRFLIIRETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKGIIL 257 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 + + I E I+ ++ L E+ D+ L +FFQ N LY+ + Sbjct: 258 SRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILSMAQ 317 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + +WDL+ GVG L A +++ G+E + +I A ++ LG T F D+ Sbjct: 318 LTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQDDA 377 Query: 291 TQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 F +Q G P++V+V+PPR G+ K + + L +APR IY SCN T A+DI L Sbjct: 378 FSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIAMLS 437 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLV 373 P F I++ Q D+FPHT H E ++ L+ Sbjct: 438 PHFVIQQTQPVDLFPHTPHVETVSYLL 464 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/329 (25%), Positives = 157/329 (47%), Gaps = 12/329 (3%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLY----PASFAPVFAALKPFIARAGL 110 +RNKA+ V + +GM R G+ E L D P+ PA+ V ++ + + + Sbjct: 173 YRNKAQFPVRKIDDVLSVGMYKR-GSHE-LVDLPIVHTQSPATMK-VLRTVRDLLDKLSV 229 Query: 111 TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITV 170 + YN + RG +K I+ S + G + L FV +D + + +++ LP++ I Sbjct: 230 SIYNEDKNRGTVKTIVARVSHTTGDVQLTFVTNTDGFPGDV-ALIAAINQALPEVNGIFQ 288 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 N P +++ GE I L + + E + P++F Q N + +Y A + Sbjct: 289 NFNPGRTSLVWGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEALSALN 348 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + D + GVG GL A ++ G+EI EA+ A +A ++ +++ + Sbjct: 349 LTHADKLVDAYAGVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTA 408 Query: 291 TQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 A+G + + ++V+PPR G+ L + P +Y SCNA T+A+D+ +L Sbjct: 409 EVLFPKWQAEGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLT 468 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++++ +Q DMFP TA +E + L ++ Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRR 497 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/383 (24%), Positives = 164/383 (42%), Gaps = 19/383 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD---FPVEEW-CAPVSGP-EQGFRN 57 C +Y +C CQ QL K ++N VE+ P G E +RN Sbjct: 77 CPIYS--QCGGCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRN 134 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDLCD-CPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K++ V + + G+ + D C + V A+ + + YN A Sbjct: 135 KSQFAVGKEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSA 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSD--TKLAQLRKALPWLHEQLPQLKVITVNIQP 174 ++ G ++ I++ G + + V D L L + + +P + + +NI Sbjct: 195 KQDGVIRNIVVRTGIKTGEIQVVLVAFKDGFKDLEGLSRDIY----DIPGVISVALNIND 250 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + + GE L + + E+ + + P++FFQ NP A ++Y Sbjct: 251 KMTSRVFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGE 310 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D + GVG GL A ++ G+EI EA+ A + G Q+ + + Sbjct: 311 ERVVDAYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWI 370 Query: 295 ---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 +G +P++ +V+PPR G L + + + + IIY SCN QT+A+D L G+ Sbjct: 371 PRWVKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKAGY 430 Query: 350 RIERVQLFDMFPHTAHYEVLTLL 372 ++ +Q +DMFP TAH E + +L Sbjct: 431 KVSYIQPYDMFPQTAHVEAIVVL 453 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 168/377 (44%), Gaps = 21/377 (5%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQGFRNKAKMVVSGSVEK 69 C CQ++ P +QL+ K + +LL+ F PV++ + P +RNK Sbjct: 116 CGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIG-MENPYH-YRNKVTAAFRRMKSG 173 Query: 70 PLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 ++ ++ +GT L +C + A + I L YN G ++++ + Sbjct: 174 EIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLIRHLQI 233 Query: 128 TESQSDGGMMLRFVLRSDT--KLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 + G +M+ V S L KAL H ++ + V +N++ M I + Sbjct: 234 RVGRKTGQIMVIIVTASPVFPSKKNLAKALVTAHPEITTV-VQNINMKDTSMVIGDRNQV 292 Query: 186 IY---LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 +Y E +RF I P SF+Q NP LY A + + + D +C Sbjct: 293 VYGKGYIEDILCGKRF-----RISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAYC 347 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGD 299 G+G G+ + ++ G+E+ A+ A+ + + + + D+ +F +GD Sbjct: 348 GIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVADEGD 407 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLF 357 ++V ++PPR G + + T+ P+ ++Y SC +++A+D++ + G+++ R+ Sbjct: 408 SIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRMTPV 467 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T E + LL + Sbjct: 468 DMFPLTRGVETVVLLTR 484 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 8/298 (2%) Query: 86 DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSD 145 DC L A + + + +G+ Y + +RG +++++ E + G +L V Sbjct: 190 DCLLESAEAVEIVKETRDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQ 249 Query: 146 TKL-AQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLW 204 + A + L + P + + ++ + G+ + + ER + Sbjct: 250 PEHEAAVNTLTRHLVSRFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFR 309 Query: 205 IRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIA 264 I +SFFQTNP A +LY + +WDL+CG G L A ++ G E+ Sbjct: 310 ISAESFFQTNPFSAEKLYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVV 369 Query: 265 SEAIACAKQSAAELGLTRLQFQALD-STQFATAQG-----DVPELVLVNPPRRGIGKPLC 318 +AI A +A G+ +F + D + A+G P++V+ +PPR G+ + Sbjct: 370 DQAIEDACVNARLNGIENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVV 429 Query: 319 DYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L M P IIY SCN T+A+D+ + I V+ FD+FPHT H E + + ++ Sbjct: 430 GALLEMGPGRIIYVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 161/380 (42%), Gaps = 39/380 (10%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGPEQGFRNKAKMVVS 64 +C C M P Q AK ++ L D P W S Q +R ++ V Sbjct: 86 QCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDLPAPLWIE--SSAPQAYRRVCRLAVK 143 Query: 65 GSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 K + + R + L + CP+ A+ + + L+ I + AR G Sbjct: 144 YDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALIVPLRTLI-----NELSSARDVG- 197 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 +I L E++S M+LR R K +L A H+ L+ T +P Sbjct: 198 --HIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHDCALYLQT-TGYPEP------- 247 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 L + + + + + L+ +P F Q NP V +L R+W+ ++ DLF Sbjct: 248 ------LADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDLF 301 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA----- 296 CG+G F L A +TGIE E + A +A + L F D T+ A Sbjct: 302 CGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAGW 361 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQ 355 Q +LVL++P R G + + +L+ R I+Y SCN T A+D L PG+ +++ Sbjct: 362 QQQCYDLVLLDPGRTG-AEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWG 420 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 L DMFPHT H E L L ++ Sbjct: 421 LLDMFPHTGHVESLFLFERK 440 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 175/415 (42%), Gaps = 54/415 (13%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--------FPVEEWCAPVSGPEQ 53 +CA + C C+W EQL K ++ L + FP+ P P Q Sbjct: 79 KCAHF--ATCGGCRWQQMGYAEQLRLKEEKIRALFSAILTPDVQFFPI----IPCDDPWQ 132 Query: 54 GFRNKAKMVVSGSV-EKPLLGML--HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGL 110 +RNK + S + + LG++ G +L +C L + F + + + L Sbjct: 133 -YRNKMEFSFSTDLSQNKYLGLIMDSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKL 191 Query: 111 TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-------- 162 Y+ R G L+ + L E Q G M+ + + A + L L Sbjct: 192 DAYHHYRNTGSLRTLTLREGQRTGDRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDR 251 Query: 163 PQLKV-ITVNIQPVHMAIMEGETEIYLTEQQALAERF--------NDVPLW--IRPQSFF 211 P+ ++ I + I + + E+ L + E+ VPL I P +FF Sbjct: 252 PECRLSIFLRIHQIAKGMASQFYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFF 311 Query: 212 QTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACA 271 Q N A +LY+ A ++DL+CG G + + + G+EI EA+ A Sbjct: 312 QPNTRQAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDA 371 Query: 272 KQSAAELGLTRLQF----------QALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYL 321 + +AA+ G + + F + ++ F +P+LV+V+PPR G+ +L Sbjct: 372 RSNAAKNGCSNVHFLCGAVHEQLTKIIEENLFP-----LPDLVVVDPPRAGLDPHALQHL 426 Query: 322 STMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 ++P+ I+Y SCN T +I L G+R+E +Q D FPHT H E + +L K Sbjct: 427 IKLSPKKILYVSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/375 (22%), Positives = 166/375 (44%), Gaps = 15/375 (4%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQGF--RNKAKMVVSGSV 67 C CQ + EQL K +++L PV+ P+ G + F RNK V Sbjct: 185 CGGCQMLDMEYTEQLKRKQKVVEDLFRGVCPVK----PIIGMKDPFHYRNKVHAVFDRDK 240 Query: 68 EKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 ++ ++++ + + + C + + ++ + + Y+ G L+++ Sbjct: 241 RGNIISGIYQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHV 300 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 L+ + S +M+ V S + L E+ P++ I NI +++ G E Sbjct: 301 LIRRAFSTNEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIIQNINGRGTSMVLGNKE 359 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 L + + + I +SF+Q NP LY A + + + D +CG+G Sbjct: 360 NVLYGKGYIVDELCGCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVIDAYCGIG 419 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---AQGDVPE 302 G+ + Q+ G+E+ +A+ A +A + ++F D+ +F +GD + Sbjct: 420 TIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMAERGDKAD 479 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMF 360 +V+++PPR G + D ++ + ++Y SCN +T+ +D+R + G+ E V DMF Sbjct: 480 VVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKLGYAAEGVWPVDMF 539 Query: 361 PHTAHYEVLTLLVKQ 375 P T H E++ L ++ Sbjct: 540 PATRHTEIIVELCRK 554 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 14/362 (3%) Query: 24 QLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVSGSVEKPLLGMLHR---D 78 QL K A +K L + ++ G + +RNK + V + G R D Sbjct: 104 QLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTSGFYKRGTHD 163 Query: 79 GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMML 138 P D D + A ++ + + +T ++ +RG ++YI++ +M+ Sbjct: 164 LVPMD--DYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGYYSHELMV 221 Query: 139 RFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERF 198 V + ++ + + + QL +LK + +N P ++ L ++A+ + Sbjct: 222 VLVSNEEV-ISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGEKAIYDTL 280 Query: 199 NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQL 258 I P SF+Q NP LY A P + D + G+G G+ A+ ++ Sbjct: 281 LGYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIGISVASRVKKV 340 Query: 259 TGIEIASEAIACAKQSAAELGLTRLQFQALDS-TQFAT--AQGDVPELVLVNPPRRGIGK 315 G+E+ A+A A+ + ++ ++ D+ QF QG P++V V+PPRRG+ Sbjct: 341 LGVEVVPGAVADAQLNLQVNNISNAEYILADAPVQFKKWQEQGLKPDVVFVDPPRRGLTT 400 Query: 316 PLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL-FDMFPHTAHYEVLTLL 372 L + + M+P I+Y SCN T+++D E+ G+ I+ L D FP T+H E +T+ Sbjct: 401 SLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSHVESITVF 460 Query: 373 VK 374 K Sbjct: 461 RK 462 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/378 (22%), Positives = 167/378 (44%), Gaps = 11/378 (2%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C ++D RC CQ P QL K ++ LL + ++ P +RNK Sbjct: 80 RCRVFD--RCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEP-WAYRNKVIA 136 Query: 62 VVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 S S + ++ ++ + + + + C + + A + + + PY+ ++ Sbjct: 137 TFSLSKKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRT 196 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G +++ L+ +++ V S A+ ++ + L ++ P++ I +N+ + ++ Sbjct: 197 GLVRHCLIRVGHVSREVLVCLVCASPIFPAR-KQLIQRLRQRHPEITTIVMNVNSRNTSV 255 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G E L + + + I +SF+Q N LY A + + + D Sbjct: 256 VLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLD 315 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATA 296 +CG+G L A ++ G+E+ ++ A ++A L F D+ F A Sbjct: 316 AYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAAR 375 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 +G ++V ++PPR G + L + P I+Y SCN T A+D+R L G+++ + Sbjct: 376 EGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVRTI 435 Query: 355 QLFDMFPHTAHYEVLTLL 372 D+FP T+H E + LL Sbjct: 436 VPVDLFPMTSHVETIVLL 453 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/374 (24%), Positives = 159/374 (42%), Gaps = 36/374 (9%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGPEQGFRNKAKMVVSG 65 C C + P +Q+ K LK+ L D P+E+ P Q F + K V Sbjct: 72 CGGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVY-----PSQPFNYRIK--VQF 124 Query: 66 SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + G ++ D+ C L F + LK F+ + L+P V Sbjct: 125 KFDGKNFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPSQV--------- 175 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 + S S +++FV ++++A + + +++ + NI+ + + + Sbjct: 176 --IVFSNSKNQKLIKFVFPDNSQIANIIPKIEIYKDEIDE------NIKGI--GFYDKKK 225 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L + + E ++ + SFFQ N L V+ K D +CGV Sbjct: 226 RQLLLGEYVIFETVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGV 285 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF-QALDSTQFATAQGDVPEL 303 G F + A ++ GIE EA+ AK + L L+F +A A+ PE+ Sbjct: 286 GTFSVPLANYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKYAKDFKPEV 345 Query: 304 VLVNPPRRGIGKPLCDYLSTM-APRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMF 360 V+ +PPR G+ K + +S + + + IIY SCN T+A+D+++ GF +V + DMF Sbjct: 346 VVFDPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMF 405 Query: 361 PHTAHYEVLTLLVK 374 P T H E + +L K Sbjct: 406 PQTHHIESVVVLEK 419 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 10/328 (3%) Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIA---RAGLT 111 +RNKA+ V ++ + L+++ + DL D P ++ +A + Sbjct: 156 YRNKAQFQVR-LIDGHVAAGLYKENS-HDLVDLPTCSVQMPATMTVMRQVVAWLEELQVP 213 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 Y+ G +K I++ E+ + G + L F+ + KL + + L + E+LP + + N Sbjct: 214 IYDEEHNSGIVKTIVVREAAATGEIQLVFITNT-PKLPKKHQLLMKIAEKLPMVVSVMQN 272 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 I +++ G+ L + + E + + + ++FFQ NP +LY AR+ + Sbjct: 273 INAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKLYRLAREALNL 332 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 P + + D + GVG GL A ++ G++ A+A A +A +T ++ ++ Sbjct: 333 APNETLVDAYSGVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAE 392 Query: 292 QFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP- 347 A G P+ ++V+PPR G+ L D + AP ++Y SCN T+A+D++ L Sbjct: 393 VLLPQWLASGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTR 452 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 G++++ +Q DMFP TA E + K+ Sbjct: 453 GYQVDYIQSIDMFPQTARCEAVVRFTKR 480 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/406 (24%), Positives = 173/406 (42%), Gaps = 52/406 (12%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQG------FRNKAKM- 61 G C C+W P EQL AK + + L+ + P P G +RNK + Sbjct: 109 GVCGGCKWQNLPYEEQLRAKQQQVYDQLS--RISHVQLPTFYPIMGSQLTLHYRNKLEFG 166 Query: 62 -----------VVSGSVEKPLLGM-LHRDGTPEDLC---DCPLYPASFAPVFAALKPFIA 106 V SG+ + + H G + + C L + ++ + Sbjct: 167 CSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYAL 226 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMML-RFVLRSDTKLAQLRKALPWLHEQLPQL 165 G++ +++ ++ G L+ +++ S + M+L +F + T L + E PQ+ Sbjct: 227 TKGISFFDLRQQTGLLRDVMIRNSDTGEWMVLVQFHFETATDQQTAEALLAHVGEHFPQI 286 Query: 166 KVI----------TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 + T PVH + +G I+ E D+ + P+SF+QTN Sbjct: 287 TSLLWVDNQKCNDTFGDLPVH--VFKGNGHIF--------EVMEDLRFKVGPKSFYQTNT 336 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A LY AR + + ++DL+ G G A ++ G+E EAI AK ++ Sbjct: 337 QQAYHLYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNS 396 Query: 276 AELGLTRLQFQALD-----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 G++ F A D + +F G P++++ +PPR G+ + + + P+ I+ Sbjct: 397 ELNGISNTTFYAGDMKDILNDEFIANNGQ-PDVIITDPPRAGMHADVIETIIRANPQRIV 455 Query: 331 YSSCNAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SCN T A+D+ L + + VQ DMFPHT H E + LL ++ Sbjct: 456 YVSCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 501 >UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNL8_9FIRM Length = 386 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 169/390 (43%), Gaps = 33/390 (8%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV---SGPEQGFRN 57 MQC +Y RC C + QP Q+ K A L+ L FP +E P+ P+ +R+ Sbjct: 1 MQCRVYR--RCGGCSMLEQPYANQIRWKQAVLERL---FP-KETVLPMLKDKNPDH-YRH 53 Query: 58 KAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K + + LG+ + + + DC + + L L+ Y Sbjct: 54 KIYATFGKNAQGIFLGLYGYHNHRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQED 113 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R++G L+++ L S D +M+ VL + K +K + L E+ P+++ + +N Sbjct: 114 RRKGLLRHVYLRISSKDEKVMMVLVL-GEKKFPGSKKLVKILLEKHPEIETVILNYNFRK 172 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +I+ GE E + + L ++ + + I SF+Q NP A +LY A + Sbjct: 173 TSIVLGEQERVVYGKGYLMDKIDGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMK 232 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D G G L A + GIE+ +A+ A ++ + +QF Sbjct: 233 VVDACSGTGTISLLLARHVQSVIGIELNPQAVFDANENKKVNQIQNVQF----------L 282 Query: 297 QGDVPELV----------LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 QG V E++ ++PPR G+G YL + I+Y SC+ T A+DI+ L Sbjct: 283 QGRVEEVIPRYRIQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQIL 342 Query: 347 PG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + I Q DMFP T + E + +L ++ Sbjct: 343 KSHYSITVSQGVDMFPQTKNIENILVLERK 372 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 159/378 (42%), Gaps = 43/378 (11%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKP 70 C C + +QLSAK L+ L + + +S G+R +A++ + + Sbjct: 92 CGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRM 151 Query: 71 LLGMLHRDGTPEDLCD-CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTE 129 +LG + D C + + F LK + L G L ++ L E Sbjct: 152 VLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLENDLA--------GVLGHVELLE 203 Query: 130 SQSDGGMMLRFV--LRSDTKLA------QLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 + R + + K A + R AL W Q P++ Sbjct: 204 DTKGVSALFRLTSPISDELKNAWEDWAEKGRVALYW---QAPKV---------------- 244 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ E+ L + + D+ L PQ F Q N A+ ++ A DW+ + DLF Sbjct: 245 GKAEVALEKMRYY--DLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLF 302 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ--GD 299 CGVG F L A + G+E+ + A+++A G L F A D T+ + Sbjct: 303 CGVGNFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELFKQ 362 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 VL++PPR G + L D + + P I+Y SCNA T+A+D L G+R+ RV L Sbjct: 363 TITKVLLDPPRAGAFEFL-DSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLM 421 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFP T+H E + LL K+ Sbjct: 422 DMFPQTSHVETMMLLQKK 439 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/326 (27%), Positives = 144/326 (44%), Gaps = 12/326 (3%) Query: 55 FRNKAKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RNK ++ V KP LG+ R ++ C + V ++ + Y Sbjct: 131 YRNKFQIPVKPIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFY 190 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 N ELK+I+ + L FV S+ K+ + L L + L I NI Sbjct: 191 NC-----ELKHIISRVGDKTDQVQLTFVTGSE-KIDNKQMILEPLKNGMANLVGIVQNIN 244 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + G+ L ++ L + D + +F+Q NP+ LY + + Sbjct: 245 KKPRGNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKLKG 304 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF---QALDS 290 V+++ D++CG+G L A ++ GIEIA EA+ A + G F +A D Sbjct: 305 VENVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAEDE 364 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 + Q PE+V+++PPR+G + L L + P I Y SCN T+A+D+ +L G Sbjct: 365 KTESIIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFG 424 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 + E Q DMFP T H EV+ +L K Sbjct: 425 YYPELFQPVDMFPQTTHIEVICILTK 450 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 101/411 (24%), Positives = 172/411 (41%), Gaps = 49/411 (11%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADF------PVEEWCAPVSGPEQGFRNKAKM 61 A +C CQW QL AK + L V+ A VS G+RNK Sbjct: 79 ADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTF--GYRNKVTY 136 Query: 62 VVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +S S E + ++ G+ + +L CP+ F P+ +K I R Y+ ++ Sbjct: 137 PLSISNEGEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRI 196 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP--------WLHEQLPQLKVITVN 171 G L+++ L + G ++L V+ + + K LP WL E +L + +N Sbjct: 197 GILRHLSLKIGEKTGEIILTLVVNGSEENPE--KLLPGITVQAQKWL-EDYSRLVGVCLN 253 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + G+ + + + + E+F+ + + P +FFQ N +L + Sbjct: 254 YNSKATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVEIVIQELAL 313 Query: 232 LPVKHMWDLFCGVGGF-----------------GLHCATPDMQ--------LTGIEIASE 266 + + D +CGVG F L+ T D+ + G+E+ Sbjct: 314 SNSEIIVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGV 373 Query: 267 AIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 AI AK +A LT + F + P++VL++PPR+G + + + L + P Sbjct: 374 AIEQAKFNAKINHLTNVHFYEGKVERLLPQLEVKPDIVLLDPPRKGCDRSVLETLLEILP 433 Query: 327 RFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 I+Y SC T+A+D++ L + + +VQ D FP TAH E L+K Sbjct: 434 ERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 179/388 (46%), Gaps = 21/388 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA----DFPVEE-WCAPVSGPEQGFR 56 +C++Y +C SCQ + + Q K + L PVE+ CA G +R Sbjct: 71 KCSIY--AKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCA---GNPYHYR 125 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK + +K + + + + + C L+P + ++ I + + Y+ Sbjct: 126 NKMIIGFQKGRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYD 185 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 R+ G L+++L+ + +M+ FV+ S+ A+ RK + L + P + I N+ P Sbjct: 186 EDRRTGLLRHVLIRYGKVTKQIMVVFVVSSNVFPAR-RKLVEELLKAHPNITTIVQNVNP 244 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +I+ G E L + + + + I +SF+Q N LY A D + Sbjct: 245 RKTSIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGN 304 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---- 290 + + D +CG+G G+ A+ Q+ G+E+ +A+ A Q+A + ++F D+ Sbjct: 305 EVVLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFM 364 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 +Q A AQ + L++ +PPR G + + + I+Y SCN T +DIR L G Sbjct: 365 SQLAKAQQTLDVLIM-DPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLG 423 Query: 349 FRIE-RVQLFDMFPHTAHYEVLTLLVKQ 375 +R+E + L DMFP T E + +LV++ Sbjct: 424 YRVEGSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 167/382 (43%), Gaps = 26/382 (6%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS--GPEQGFRNKAKMV----- 62 + + EQL K ++N++ +++ + G E G+ + K V Sbjct: 72 KTSGANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQK 131 Query: 63 VSGSVE----KPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 V+G V+ KP R ++ C + + L+ I+ L+ Y+ Sbjct: 132 VNGEVKMGYYKP------RSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSH 185 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSD-TKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G +++I+ + +M+ V + KL + + + L +++ I +NI Sbjct: 186 SGAIRHIMFRTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVS---IMLNINDKKT 242 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ L + + + + + I +SF+Q NP LY+ A + + Sbjct: 243 NVIFGDKTENLFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTI 302 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF---QALDSTQFA 294 D +CG+G L A ++ GIEI A+ A ++A +T ++F ++ D + Sbjct: 303 IDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKL 362 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +Q + V+V+PPR+G + L+ M I+Y SCN T+A+D+ + G+++ Sbjct: 363 ISQDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLGYKLG 422 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 VQ DMFP T H E + LL K Sbjct: 423 SVQPVDMFPGTYHVETVVLLSK 444 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 164/363 (45%), Gaps = 20/363 (5%) Query: 24 QLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKM---VVSGSVEKPLLGMLHRD 78 QL+ K ++ L V P G +RNKA++ +V+G +E +R Sbjct: 115 QLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLETGF----YRR 170 Query: 79 GTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGM 136 G+ + + D + + + + G++ Y+ +G +++I+ + Sbjct: 171 GSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGFYSHEL 230 Query: 137 MLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAE 196 M+ ++ + KL + L +LP+LK NI ++ G+ + + + Sbjct: 231 MV-VIITNTKKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHD 289 Query: 197 RFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDM 256 + I P SF+Q NP + LY A + P + D + G+G L A Sbjct: 290 QLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVA 349 Query: 257 QLTGIEIASEAIACAKQSAAELGLTRLQFQALDS----TQFATAQGDVPELVLVNPPRRG 312 ++ G+E+ +A+ A+++A + ++F D+ TQ+A A G P++V V+PPR+G Sbjct: 350 KVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWA-ADGLKPDVVFVDPPRKG 408 Query: 313 IGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER-VQLFDMFPHTAHYEVL 369 + L +S M P+ +Y SCN T+A+D ++ GF I+ +Q D FP T H E + Sbjct: 409 LTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVESV 468 Query: 370 TLL 372 + Sbjct: 469 LIF 471 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/385 (23%), Positives = 176/385 (45%), Gaps = 27/385 (7%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKMVVS----G 65 C C + +QL K +++ F E + P +Q +R+K ++ G Sbjct: 15 CAGCDRLHIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQLPFGHRKIG 74 Query: 66 SVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 LG+ +++ T D +C + V AA++ + L PY+ + G L++ Sbjct: 75 KKSVLTLGLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEKKGSGLLRH 134 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQL--------KVITV--NIQP 174 I+L ++ + +++ V +++++ +K L+ + Q V+ + N+ Sbjct: 135 IVLRKANATQEILVGIVT-NESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNR 193 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP- 233 + ++ GE E+ + + E+ + I +FFQ NP LY + LP Sbjct: 194 KNTKVVLGEKEVTWYGRHFVKEKIGKLDFQIGLSTFFQVNPFQIENLYNLI---LEDLPE 250 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF---QALDS 290 K + D +CG+G L+ A+ ++ G+E S +I A ++ G+ + F + LD+ Sbjct: 251 NKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDT 310 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGF 349 + A + ++V+++PPR G+ L I+Y SCN +T+ +D EL F Sbjct: 311 LRAALNEN--SDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIELTKSF 368 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 + E++ D+FPHT+H E +++ K Sbjct: 369 KYEKITPVDLFPHTSHLESVSVFTK 393 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 138/291 (47%), Gaps = 8/291 (2%) Query: 84 LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR 143 L +CPL L+ + + Y+V G LK I + S +M+ V++ Sbjct: 146 LENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISI-RSNYKSEIMITVVVK 204 Query: 144 SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPL 203 D + + + L E +L +NI +I+ G+ + +++ ++ Sbjct: 205 KD--IVEAHNFVKSLSE-YEKLVSGYININTKKASIIMGQEIKLIFLKKSFTDKIGKYEF 261 Query: 204 WIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEI 263 I P+SFFQ N LY A+D++ K++ DL+ G+G ++ + ++ G+E+ Sbjct: 262 NISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYFSENFKKVIGVEV 321 Query: 264 ASEAIACAKQSAAELGLTRLQFQALDSTQFATA--QGDVPELVLVNPPRRGIGKPLCDYL 321 +A+ AK++ + ++F S + + + +++ V+PPR+G+ K + D + Sbjct: 322 VKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEILKNNNIDIISVDPPRKGLDKKVVDTI 381 Query: 322 STMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLT 370 + ++Y SCN T+ +D++ GF +++V+L DMF T H EV+ Sbjct: 382 IKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKVKLCDMFSKTGHCEVVV 432 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 7/321 (2%) Query: 55 FRNKAKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RNKA+ + K +G + D+ DC + + A++ F ++ Y Sbjct: 125 YRNKAQYPIREVDGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIY 184 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 N A +G +++++ S + M+ V+ KL + + L +P + I +N Sbjct: 185 NEATHKGLARHLVIRNSINFDEAMVCLVING-KKLPHAQDLVERLR-AIPGITGILLNHN 242 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 ++ E L + + ++ ++ I SFFQ NP LY A Sbjct: 243 TAKGNVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAALTG 302 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + D +CG+G L A ++ G+E +A+A A ++A G+ ++F ++ Sbjct: 303 SETVLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDV 362 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 G+ ++V+V+PPR+G + + AP ++Y SC+ T+A+D++ + G+ + Sbjct: 363 VL--GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENGYVV 420 Query: 352 ERVQLFDMFPHTAHYEVLTLL 372 +VQ DMFP+T+H E LL Sbjct: 421 NKVQPVDMFPYTSHVETCVLL 441 >UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJZ3_9BACT Length = 409 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 172/386 (44%), Gaps = 41/386 (10%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFP------VEEWCAPVSGPEQGFRNKAKMVVS 64 C C +QL K L+ L+ + P E A S + +R + +V+ Sbjct: 42 CGGCSLQQHSYEQQLEIKKQALERLVRETPGMSSLAKLEVEAVASARDYKYRQRMDFIVT 101 Query: 65 --GSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 GS ++ G + G E L +C L ++A GL Y+ + G L Sbjct: 102 PEGSGQRRCDG---QKGIVE-LNECSLVEDENYAIYAKTLGLSREVGLEAYDQNKYYGCL 157 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +YI++ ++S G ++ + S A+L EQ+ Q K++ +Q V+ + + Sbjct: 158 RYIIIRRTRS-GQQLVSLLTTSSADEAKL--------EQIAQ-KLLDEGVQSVYWNVNDN 207 Query: 183 ETEIYLTE------QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + L E Q+ + E + P +FFQ N VAS Y + R+++++ K Sbjct: 208 RLDDSLGECRKFWGQEFITENLLGRDFILGPLTFFQANHDVASAAYTSVRNFIKECQPKK 267 Query: 237 MWDLFCGVGGFGLHCATPDM------QLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + DL+ G C P + +T +E E + A+++ G+ ++F D Sbjct: 268 IHDLYSGT------CTMPVIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDV 321 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGF 349 +F E ++NPPR+G+ + + +AP + Y SC+ +++ +D+ L + Sbjct: 322 AEFLKQSDLEMEFSVLNPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREY 381 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVKQ 375 + ++QLFDMFP T H+E L LL K+ Sbjct: 382 KPLKIQLFDMFPQTEHFETLVLLTKK 407 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 7/263 (2%) Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +K +KYI S +G + + FV +D K+ + K + L + +K I +NI Sbjct: 192 KKNYGVKYIATRTSFYNGDVQVTFVANTD-KIKNMDKVVNELKRERI-VKSIILNITNDK 249 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + L + E+ D + +SFFQ NP +LY ++ Sbjct: 250 DHLVMGTESVTLYGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDV 309 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CGVG G + + ++ G++I AI A + L + A D+ + Sbjct: 310 VLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPR 369 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIE 352 +G ++ +V+PPR G+G PL L + + I+Y SCN T+A+D++ L ++I Sbjct: 370 WKKKGINFDVAIVDPPRVGLG-PLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIR 428 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 R+Q DMFP TA E + L+++ Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 171/385 (44%), Gaps = 21/385 (5%) Query: 2 QCALY-DAGRCRSCQWIMQPIP--EQLSAKTADLKNLLADF-PVEEWCAPVS-GPEQGF- 55 +C+ Y D G C MQ I Q + K L N L+ + ++ P+S P Q F Sbjct: 37 KCSFYSDCGGCS-----MQEIEPHYQFAIKKKLLINALSRIGKLNDFPEPISITPSQFFH 91 Query: 56 -RNKAKM-VVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 RNK+ V + S ++G R+ D+ +CP+ + ++ + + Sbjct: 92 YRNKSTFPVYNESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINA 151 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 + R++G L++I + + +++ FV K L L+ + I NI Sbjct: 152 DHDIRRKGGLRHISIRSGINTNEVLITFVSNFSIK-KLLFPITNKLNGSESNVVGILNNI 210 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 QP + G T LT + + ++F + + I SFFQ N A + R+ + Sbjct: 211 QPKPNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFFQVNLVEAEKAINCIRNIISNT 270 Query: 233 -PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + + D + G+G + A+ ++ GIEI +EA A ++A + + F+ D T Sbjct: 271 NKIVRIIDAYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVT 330 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD----IRELP 347 ++ + ++++PPR+G+ L D ++ + P I Y SCN T+A+D +RE Sbjct: 331 KYLPKILLPNDFLILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILRE-H 389 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLL 372 + I + FD FP T H E L L Sbjct: 390 KYSIISITAFDFFPQTTHLETLVYL 414 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 158/387 (40%), Gaps = 52/387 (13%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPEQGFRNKAKMVVSGS 66 +C C Q+ K+ L +L++ + E P+ G E G+R +A++ + Sbjct: 86 NQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVD 145 Query: 67 VEKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + LL R E++ DC A P L P +LK Sbjct: 146 KKTQLLQFGFRKKQSKQIENITDC----AVLDPRLNVLLP-----------------KLK 184 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 +L T S + VL + LR P + + L + +A EG Sbjct: 185 SLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALMTLMT------LAKEEGA 238 Query: 184 TEIYLTEQQALAERFNDVPLW--------IRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 T + E L D P + P F Q N V Q+ A A +W+ + Sbjct: 239 TLYSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADE 298 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF------QALD 289 + DLFCG+G F L A + G+E E + A +AA L+ +F + L Sbjct: 299 RVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLS 358 Query: 290 STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-- 347 S +A + D VL++P R G + D +S + + ++Y SCN T+A+D L Sbjct: 359 SQLWAKEKFDK---VLLDPARAG-ASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQ 414 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+++ ++ + DMFPHT+H E + L +K Sbjct: 415 GYQLAKLGMLDMFPHTSHLESMALFIK 441 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 5/199 (2%) Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G L + L ER D+ +I +FFQ N A A LY A + + + D + Sbjct: 270 GGRPFTLYGRDYLEERLGDLRFYISATTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAY 329 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQG 298 CG G L + ++ G+E+ EAI A++++ L + F+ + +G Sbjct: 330 CGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNNLANVHFRTGAAEAVLPRLAGKG 389 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 PE+++++PPR G + + ++TM PR ++Y SCN T+A+D+ L GF+ VQ Sbjct: 390 YRPEVIILDPPRAGCDRRVLAAVATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQP 449 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFPHT H E LVK+ Sbjct: 450 VDMFPHTHHVECCCFLVKE 468 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 155/331 (46%), Gaps = 14/331 (4%) Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 G+RN+ + + + L R G+ +L CP+ + LK + +GL+ Sbjct: 136 GYRNRGLIPLRRGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLS 195 Query: 112 P-YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRK-ALPWLHEQLPQLKVIT 169 ++++ +G L+++ L G +++ V S +L L++ A W+ P +K +T Sbjct: 196 ADHDLSHSQG-LRHLGLRIGHHTGEVLITVV--SSQQLPALQRLAQQWIERWDP-VKGVT 251 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 +N+QP + G T L + E F + L + +FFQ N A ++ A W+ Sbjct: 252 LNLQPRRTNQILGATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWL 311 Query: 230 RQLPVKH-MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQA 287 Q + + D +CG+G L A + G+EI ++I A+ +A GL R +FQA Sbjct: 312 SQAELAGPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQA 371 Query: 288 LDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 D ++V+PPRRG+ + + + + P + Y SC+ T A+D++ L Sbjct: 372 GDVANLLKETLATCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLL 431 Query: 347 ---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+E++Q D FP T H E L L + Sbjct: 432 QPEGPYRLEQLQPVDFFPQTTHLENLAFLRR 462 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 26/384 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRN 57 +C ++ A C+ C ++ P QL K + LK L + + V G E+ G+RN Sbjct: 64 KCFVHHA--CKGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRN 121 Query: 58 KAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + K+ VS + E L + ++ C ++ + + + R G+ PYN Sbjct: 122 QCKLPVSLNKEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNH 181 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 K G ++ DG V D L E + ++ + Q + Sbjct: 182 HTKSGIRSLVV---RGFDGKYQCTLVTGHDELSCSLI-------EDILHIRGMYSLWQSI 231 Query: 176 HM----AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 H A + G+ ++L ++ L F+ + L + P+SFFQ N A A LY T V+ Sbjct: 232 HTVKNTAEVFGKQMVHLGGEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKG 291 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 K + + + G+G L+ ++ GIE +A+ A Q+A ++F D+ Sbjct: 292 HK-KRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAA 350 Query: 292 QFAT--AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PG 348 T ++ ++++V+PPR G+ + + L + IIY SCN T+ K++ L Sbjct: 351 SKLTYLSKNKEIDVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEK 410 Query: 349 FRIERVQLFDMFPHTAHYEVLTLL 372 +R++RV DMFP+T H E + LL Sbjct: 411 YRVQRVIPIDMFPNTQHVETVVLL 434 >UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexaceae RepID=A5V044_ROSS1 Length = 407 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 155/376 (41%), Gaps = 17/376 (4%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLL-ADFPVEEWCA-PVSGPEQGFRNKAKMVVSGS 66 G+C C + + P Q++AK L++L D P V F + +M S Sbjct: 33 GQCGGCAFQDREYPVQVAAKRTALRHLWEGDLPETLLTTLDVVASPNPFAYRTRMDFVAS 92 Query: 67 VEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 E+ L R DL +C L PA A+ R GL Y++ G L+Y+ Sbjct: 93 KERFGLRRSGRFNYIIDLKECHLIPARAFAAARAMYDHAMRLGLPDYDLRAHAGFLRYVA 152 Query: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEI 186 + S D ++ D K EQ+ Q + + VH I T+I Sbjct: 153 VRRSPDDEVLLALITAAPDEAGTYAGKV-----EQVAQAALEYDGVVGVHWLINPTRTDI 207 Query: 187 YLTE------QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV--RQLPVKHMW 238 E + L R L I P +FFQ N + L RD V + + Sbjct: 208 SFGETARFWGRATLPMRVGAHTLDIGPNTFFQNNVWLLMPLLEAVRDAVAGEGERARALA 267 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD-STQFATAQ 297 DL+ GVG L A Q+ +E E++ A+++ A G + D + Sbjct: 268 DLYGGVGTIALFVADLADQIVCVESVEESVRLARENIARAGFEHIAIVKADVADALRERT 327 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQL 356 ++V+ +PPR G+G +C L + P+ I+Y SCN T D+R L +R+ ++ Sbjct: 328 RGAFDIVIADPPRTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAYRLTSLRG 387 Query: 357 FDMFPHTAHYEVLTLL 372 +DMFPHT H E L +L Sbjct: 388 YDMFPHTPHLESLAVL 403 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 107/401 (26%), Positives = 178/401 (44%), Gaps = 36/401 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQ--GFRN 57 CA + G C C+W QL K +++N L + E P+ E +RN Sbjct: 75 CAHF--GYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPE-LMPIVASENIYFYRN 131 Query: 58 KAKMVVSG-------------SVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAAL 101 K + S ++E+ H G + + D C L + + Sbjct: 132 KMEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEI 191 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 K F + Y+ ++ G L+ +++ S S G +ML SD+K L L + + Sbjct: 192 KRFALENNIAFYSPRQQTGVLRSMMIRIS-STGEIMLVIQFFSDSKKCNL--LLEHIAQT 248 Query: 162 LPQLKVITVNIQPV-HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 PQ+ + I + AI + + +IY + E + I +SF+QTN A + Sbjct: 249 FPQITSLQYCINSKGNDAIYDQDLKIY-KGTDCIYEEMEGLRFKINAKSFYQTNSKQAHK 307 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY RD+ + ++DL+ G G A ++ G+E EAIA AK +A G+ Sbjct: 308 LYQITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGI 367 Query: 281 TRLQFQALD-----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 + F D + F A G P++++ +PPR G+ K + + + +AP I+Y SCN Sbjct: 368 ENVSFYVGDMKNVFNDTFIKANG-TPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSCN 426 Query: 336 AQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + T A+D+ L +++ +VQ DMFP T H E + LL K+ Sbjct: 427 SATQARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 110/402 (27%), Positives = 173/402 (43%), Gaps = 44/402 (10%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQG--FRNKAKMVVSG 65 C C+W P QL AK + + L VEE P+ G EQ +RNK + S Sbjct: 69 CGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEM-QPILGSEQTEYYRNKLEFTFSN 127 Query: 66 S--VEKPLLGMLHRDGTPE-----------------DLCDCPLYPASFAPVFAALKPFIA 106 + + + D +PE D+ +C L A V ++ FI Sbjct: 128 KRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHL----GAKVSDEIRLFIR 183 Query: 107 RAGLT-----PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 + P+ R + L L+ + S G +M+ V D A+ L + E+ Sbjct: 184 EYCMQDPERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAR-EALLAAVAER 242 Query: 162 LPQLKVITVNIQPVHMAIMEGETEIYLTE-QQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 PQ+ + I + G+ E+ L ++ + E + I +SF+QTN A Q Sbjct: 243 FPQITSLLYVINTKCNDTI-GDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQ 301 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY AR++ + ++DL+ G G A ++ GIE EAI A+ ++ G+ Sbjct: 302 LYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGI 361 Query: 281 TRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 F A D T Q P++V+ +PPR G+ + + D + APR I+Y SCN Sbjct: 362 ENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNP 421 Query: 337 QTMAKDIRELPG---FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T A+D+ L +R + + DMFPHT H E + LLV+ Sbjct: 422 ATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVRN 463 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 19/306 (6%) Query: 86 DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRS- 144 D L+ +K + GL P++ ++ G +Y ++ +S ++ V S Sbjct: 180 DSGLFDKQMEDHLKNIKQYCIETGLDPWHGPKREGFFRYFVVRKSFKTDELLCNLVTTSP 239 Query: 145 DTKLAQLRKALPWLHE----QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFND 200 + + L K +L + +L L + T+N + I + + + + E+ Sbjct: 240 ELEKFDLNKFADFLKDIFGKRLAGL-LHTINDETGDRTIATSGSLNLVYGKDKIVEQLLG 298 Query: 201 VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH----MWDLFCGVGGFG--LHCATP 254 + I +SFFQTNP A +LY ++V + K + DLFCG G G + + Sbjct: 299 LDFEISMKSFFQTNPKCAEKLYNKVVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASKSK 358 Query: 255 DMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP---ELVLVNPPRR 311 + Q+ G++I + AI A+++A +T +QF A D +F T+ + + ++++P R Sbjct: 359 NAQIIGVDIVASAIEDAEKNAKRNNITGVQFFAADVGKFLTSHPEYENKIKTIILDPARA 418 Query: 312 GIG-KPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEV 368 GI K L ++ A R ++Y SCN T A+D L G+ I+++ L D FPHTAH E Sbjct: 419 GIAPKTLQKIINLNADR-MVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIET 477 Query: 369 LTLLVK 374 + L K Sbjct: 478 VVLFEK 483 >UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EB67_9ACTN Length = 482 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 107/404 (26%), Positives = 172/404 (42%), Gaps = 37/404 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSG---------- 50 C++ A C C + +P +QL+AK A ++ L A E A P+ G Sbjct: 85 CSIMKA--CGGCTALNRPYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGK 142 Query: 51 --PEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIA 106 +GFR+KA + E + GT + + +CP+ + + Sbjct: 143 YPAPRGFRHKAATPFAPGKEGAVRCGFFERGTHKIVAVPECPVEAPGARQILNGIAREAE 202 Query: 107 RAGLTPYNVARKRGELKYILLTES-QSDGGMMLRFVLRSDTKLAQ-LRKALPWLHEQLPQ 164 R + +N + G L+Y ++ ++D M+ + D AQ +A+ L+ P Sbjct: 203 RLHIPAFNEDKHLGLLRYAVVRCGWRTDQVMVTLVTAQRDLPHAQEFFEAVAALN---PH 259 Query: 165 LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 + + NI + GE + + + ++ I P +F+QTNP LY Sbjct: 260 IVTVAQNINGRPGNAILGEETRIVYGAECMRDQLLGCEFDISPTAFYQTNPQQTELLYQL 319 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ-------LTGIEIASEAIACAKQSAAE 277 A D + + D +CG G GL CA Q L G+E IA A+++A Sbjct: 320 AIDGMDLQQGDVLMDAYCGSGTIGL-CAAKAAQDKGVGIMLLGVERNHAGIADARRNAEL 378 Query: 278 LGLTRLQ-FQALDSTQFATAQGDVPELVLV---NPPRRGIGKPLCDYLSTMAPRFIIYSS 333 GLTR F A D+T + D E V V +PPR G + + PR I Y S Sbjct: 379 NGLTRSAWFMADDATDYILDAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRITYIS 438 Query: 334 CNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 CN T +D+ +L G+R+ ++ DMFPHT H E + +L ++ Sbjct: 439 CNPVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0H1_9FIRM Length = 400 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 19/227 (8%) Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 + VNI + G + L + ++ ++ ++ I SF+Q NP ++Y A + Sbjct: 172 LCVNINEGSGNAILGRETLCLYGKDSIEDKIGELSFSISVPSFYQVNPVQTEKIYGKALE 231 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF-- 285 + + +WD +CG+G L A Q+ G+EI EAI AK++A + GL +F Sbjct: 232 YAALTGEETVWDCYCGIGTISLFLAQKAKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFV 291 Query: 286 ---------------QALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 + L + GD+ ++V ++PPR+G + + ++P+ I+ Sbjct: 292 GAAEEVLPKWVEEQKRELSAKGADCGIGDMVDVVSLDPPRKGCDEACLSAVLELSPKRIV 351 Query: 331 YSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SC+ ++A+DI+ L G+ +E+ D FP T H E + LL K+ Sbjct: 352 YVSCDPGSLARDIKYLGEGGYVLEKWVGIDNFPRTGHVETIALLQKE 398 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 110/426 (25%), Positives = 183/426 (42%), Gaps = 75/426 (17%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQGFRNKAKMVV 63 RC CQ M P Q KT +++ L + PV E + P + +RN+ +M + Sbjct: 76 RCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVG-AANPWR-YRNRVQMHL 133 Query: 64 ---SGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALK---PFIARAGLTPYNV 115 +G+ KPL +R + E + +CPL P SF PV AL+ P I AG P Sbjct: 134 RREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDPAGELP--- 190 Query: 116 ARKRGELKYILL---TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 +++++L T + G MML V + + RKA+ L ++L + T Sbjct: 191 ------IRHVVLKTTTPLERAGEMMLILVFSA--WRSAWRKAVGDLAKRL-MGEGATGEG 241 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIR-------------------------- 206 A EG T T + ER+N V L++ Sbjct: 242 ATGEGATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERL 301 Query: 207 -------------PQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCAT 253 P SF Q NP LY ++ + + D +CG G L A Sbjct: 302 TDYLPGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLAR 361 Query: 254 PDMQLTGIEIASEAIACAKQSAAELGLTRLQF---QALDSTQFATAQGDVPELVLVNPPR 310 ++ GIE A+ A+++A + G+T ++F + D + VP++++++PPR Sbjct: 362 DCARVIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPPR 421 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEV 368 RG + + ++ P I+Y SC+ ++A+D L G+++++V DMFP T H E Sbjct: 422 RGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVET 481 Query: 369 LTLLVK 374 + L+ + Sbjct: 482 VVLMSR 487 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + L RF I P +F Q NP +LY DW K +WDL+CG+G L Sbjct: 260 EDVLGARFK-----ISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLA 314 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPR 310 A ++ GIE A+ A+++A + ++F + GD P +V+++PPR Sbjct: 315 LAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQIGDYPHIVVLDPPR 374 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPGFRIERVQLFDMFPHTAHYEV 368 G + + + L + P IIY SC+A T+A+D I + G+R+ VQ DMFP T E Sbjct: 375 AGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVES 434 Query: 369 LTLLV 373 + ++ Sbjct: 435 IIVMT 439 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 112/393 (28%), Positives = 174/393 (44%), Gaps = 44/393 (11%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGF--RNKA 59 +C + G C C P +QL K + +L +F V E + G + F RNK Sbjct: 72 KCKFF--GACGGCALQNLPYEKQLERKLRWVNQIL-NFEVAE----ILGSPKWFQYRNKM 124 Query: 60 KMVVSGSV-EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + +V + PL LH+ T D+ DC + F + A F A Y Sbjct: 125 EYTFGDTVKDGPLALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKK 184 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ--LKVITV--- 170 +G LK++++ S++ G ++ V S Q+ E + K+ V Sbjct: 185 VSHQGFLKFLVVRRSETTGXFLVNIVTSS-----QIAYDFTAFVEAIKNTGFKIAGVLHT 239 Query: 171 -------NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 I+P + ++ G IY ++ L +F I P SFFQTN A LYA Sbjct: 240 ISDSPSDAIKPDSVELLYGLNYIY---EEILGLKFK-----ISPFSFFQTNTKGAEVLYA 291 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 A + L K ++DL+ G G A ++ GIEI +EA+A AK++A GL Sbjct: 292 NALALLSDLEDKTVFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENC 351 Query: 284 QFQALDS-TQFATAQGDV-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 +F A D TQ A DV P++++V+PPR GI + + + I+Y SC A ++A+ Sbjct: 352 EFIAGDVLTQIDNA--DVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLAR 409 Query: 342 DIRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 D+ G+ + + DMF T H E + LL Sbjct: 410 DLVAFAEGGYHVAQSLCVDMFAQTYHVETVVLL 442 >UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM03_CRYCD Length = 543 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 23/305 (7%) Query: 87 CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDT 146 CP+ V AA + + + PY+ G ++++++ +++ V Sbjct: 239 CPVEHPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGHESDEVLVTLVTNGKV 298 Query: 147 KLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALA------ERFND 200 + L + P++ + N+ M I+ E+Q L + Sbjct: 299 -FPSGKNFARHLKKHCPEITTVVQNVN------MRSTNAIFGGEEQVLYGPGFILDTLCG 351 Query: 201 VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH---MWDLFCGVGGFGLHCAT--PD 255 + I SF+Q N LY TA + + D +CG G GL A+ P+ Sbjct: 352 LSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQVPN 411 Query: 256 MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLVNPPRRG 312 Q+ GI+ AS +I A+Q+A G+ F D+T F A D ++++++PPR G Sbjct: 412 SQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDFLLHRAAASDSIDVLMMDPPRAG 471 Query: 313 IGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLT 370 + +AP ++Y SCN T +D+R G+ + R++ DMFPHT H E + Sbjct: 472 STSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVDMFPHTDHIETVA 531 Query: 371 LLVKQ 375 LL++ Sbjct: 532 LLMRN 536 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 155/378 (41%), Gaps = 47/378 (12%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 G C CQ + Q +K L ++ E +SGP G+R +A++ ++ + Sbjct: 85 GVCGGCQQQHASVALQQRSKAQALCRMMK----REVDEVISGPAWGYRRRARLSLNFTPR 140 Query: 69 KPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 KP L M R DL D P P AL P + R L+ + R G ++ + +T Sbjct: 141 KPGLQMGFRKAGSNDLVDVHRCPV-LVPRLEALLPKL-RDCLSSLDGVRHLGHVELVDVT 198 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 G +M+ LR P +L+ + + EG +YL Sbjct: 199 ----SGPLMV------------LRHLKPLSAADREKLECFSHS---------EG-VALYL 232 Query: 189 TEQQALAERFNDVPLW---------IRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 Q E N W P+ F Q N AV Q+ A A +W+ P + + D Sbjct: 233 APQSDTLEHLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLD 292 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ-- 297 LFCG+G F L A + G+E + + +A L + F + + T Q Sbjct: 293 LFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPW 352 Query: 298 -GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 + VL++P R G + ++ + PR ++Y SCN T+ +D L G+R R+ Sbjct: 353 AQQGFDKVLLDPARAGAAG-VMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRL 411 Query: 355 QLFDMFPHTAHYEVLTLL 372 + DMFPHT H E + L Sbjct: 412 AMLDMFPHTGHLESMALF 429 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 101/396 (25%), Positives = 170/396 (42%), Gaps = 27/396 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRN 57 +C + RC C+ EQL KT +K+ LA E +G E +RN Sbjct: 78 ECGRFS--RCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRN 135 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-------PEDLC---DCPLYPASFAPVFAALKPFIAR 107 K V +K LG + +GT E C C L + A ++ + R Sbjct: 136 KVHFQVEERPDKIALG-FYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNR 194 Query: 108 A----GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 G R+ ++I+L + G +M V S + + + L P Sbjct: 195 HRGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGE-KAFVKELLSLRP 253 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 L + NI ++ G+ L ++ + +R + I P SF+Q NP LY Sbjct: 254 GLVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNPVQTLVLYN 313 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 + + + + D + G+G L A ++ G+E +A+A A+++AA +T Sbjct: 314 KVQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNA 373 Query: 284 QF---QALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 +F + AQG PE+V+++PPR G G+ + + + M ++Y SCN T+A Sbjct: 374 EFLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATLA 433 Query: 341 KDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 +D+R G+ ++ VQ DMFP TAH E + L+ + Sbjct: 434 RDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 11/214 (5%) Query: 171 NIQPVHMAIMEGETEI----YLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 N+ V + E +T+I L ++++ + + + + QSF+Q N +++Y T Sbjct: 234 NLNIVQIVCNEEKTKILKLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLL 293 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + + + D F GVG G++ A Q+ +EI+ +A K++A L L+F Sbjct: 294 KSLNLTGSEFIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFI 353 Query: 287 ALDSTQF----ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 + D +F T + ++ ++++ +PPR G+ K + + + + I Y SCN +T+ +D Sbjct: 354 SEDCNRFFDKECTRRQNI-DVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRD 412 Query: 343 IREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 ++ G++IE VQ FDMFP T H E L LL K Sbjct: 413 LKLFTSKGYKIEFVQPFDMFPQTYHVETLALLSK 446 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 159/385 (41%), Gaps = 38/385 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTA---DLKNLLADFPVEEWCAPVSGPEQGFRNKA 59 C Y G+C C EQ+ AK + D L F E P+SG +Q +R Sbjct: 90 CQYY--GQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSC 147 Query: 60 KMVVSGSVEK--PLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ ++ + P++G R + + +CP+ + LK ++ A Sbjct: 148 RIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCK---- 203 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 E+ + L+ G M LR L+ + L +E ++ N Q ++ Sbjct: 204 ----EITHAELSMGDQQGAMTLRIKKPLPESLSSSLQKLAEDNE----FRLYFDNGQQIN 255 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 E + L + ++ + +P F Q N +V +Q+ A DW+ Sbjct: 256 AFGDEADLSYQLEK--------SETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDR 307 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLF GVG F L AT + G+E + + A+ +A + GL +F D ++ A Sbjct: 308 VLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKA 367 Query: 297 -----QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 QG +L++PPR G + L I+Y SCN +A+D EL G+ Sbjct: 368 LPWYKQGFSK--ILIDPPRTG-ALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGY 424 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 + + + DMFPHT+H E L L K Sbjct: 425 KASKFCVMDMFPHTSHVESLVLFEK 449 >UniRef50_A7JSH2 Possible tRNA methyltransferase (Fragment) n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JSH2_PASHA Length = 82 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 45/78 (57%), Positives = 58/78 (74%) Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G P+LV+VNPPRRGIGK L ++L+ + ++IYSSCNA +MA D L + + +VQLF Sbjct: 5 GSPPDLVIVNPPRRGIGKLLAEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLF 64 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMF HTAHYE LT LVK+ Sbjct: 65 DMFAHTAHYETLTFLVKK 82 >UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU9_9FIRM Length = 441 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 11/335 (3%) Query: 49 SGPEQGFRNKAKMVVSGSVE-KPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPF 104 +G + +RNK + + + PL LH+ E+ +C + F + + F Sbjct: 110 AGIFENYRNKMEFTFGDTYKGSPLALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDF 169 Query: 105 IARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP- 163 +N G L+++ + + G +++ V D L L +L Sbjct: 170 FKDKAF--FNRRSHEGTLRHLAIRRTNY-GEILVNIVTTKDNDLDLKSYVDELLSLKLEA 226 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 Q+K I I + E L + + E + I SFFQTN A+ LY Sbjct: 227 QIKGICHTINDSQGDAIIKEDFHILYGRDYVIEELLGLKFKIGTFSFFQTNTYSAAYLYQ 286 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 A D + L K + DL+CG G A + G+EI EA+ A+++A ++ + Sbjct: 287 LAFDMIDNLQGKKVLDLYCGTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNV 346 Query: 284 QFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLC-DYLSTMAPRFIIYSSCNAQTMAKD 342 F A D + ++++++PPR GI P D + +P +Y SCN + KD Sbjct: 347 DFIAGDVAKVVNDLDIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKD 406 Query: 343 IREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ G++++++ D FP T + E+++LL K Sbjct: 407 VKRFIERGYKLKKIVGLDQFPRTVNLELISLLEKD 441 >UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S3A2_FINM2 Length = 403 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 117/236 (49%), Gaps = 24/236 (10%) Query: 150 QLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY--------LTEQQALAERFNDV 201 +++ +L ++ +QL + N++ V + EIY + +++ ++ D+ Sbjct: 180 EIQISLDYISDQLLE------NLKTVDSIV-----EIYEKNKNFDLIYKKKQFVDKIGDL 228 Query: 202 PLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGI 261 I P+SFFQ N S LY TA+ + + DL+CG+G ++ + G+ Sbjct: 229 SFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGNGNT--IGV 286 Query: 262 EIASEAIACAKQSAAELGLTRLQFQALDSTQ-FATAQGDVPELVLVNPPRRGIGKPLCDY 320 E+ +A+ A ++ L +QF S + +++LV+PPR+G+ + + D Sbjct: 287 EVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKLTQEHFDVILVDPPRKGMDEKVVDA 346 Query: 321 LSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + + ++Y SC+ T+A+D++ L GF +E V+L DMF T H E + L+ K Sbjct: 347 IIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTMHVETVALIQK 402 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 29/379 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKT---ADLKNLLADFPVEEWCAPVSGPEQGFRNKA 59 C +D +C C I Q K DL N A E CAP+SG +R +A Sbjct: 83 CPHFD--KCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRA 140 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 ++ + + R + D+ + A A +AL P +A N + Sbjct: 141 RLATWFDKNTKHISLGFRASSSSDVVEIQ-SCAVLAEPLSALIPDLAFM----LNQLSGK 195 Query: 120 GELKYILLTESQSDGGMMLRFV-LRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 L ++ LT++ + ++LR + SD A+L + HE + L+ + ++ A Sbjct: 196 KALGHVELTQADNGNFVVLRVTKVLSDKDKARLVE-FANKHEVIVLLQDDDAQCEHLNGA 254 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 GE Y A +D+ L P +F Q N V + + A +W+ + + Sbjct: 255 ---GEQPFY-------ALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVL 304 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 DLFCG+G F L A ++ G+E + A+ +A + GL ++ F D + + + Sbjct: 305 DLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADLSKEP 364 Query: 298 --GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 G V ++ L++P R G + + L + P+ ++Y SCN ++A+D + G+++++ Sbjct: 365 WLGKVDKM-LIDPARAGAYESM-QSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKK 422 Query: 354 VQLFDMFPHTAHYEVLTLL 372 + L DMFP T H E + L Sbjct: 423 IGLIDMFPQTHHLESMALF 441 >UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLW5_9ACTN Length = 452 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 103/428 (24%), Positives = 177/428 (41%), Gaps = 72/428 (16%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE-----QGFRNKAKMVVSG 65 C C+W+ P P QL K + LL E++ V + FR+KA + Sbjct: 14 CGGCEWLSVPYPIQLKRKQQQVVELLGPLG-EKFGVSVEDIRGMREPRAFRHKAATPFAP 72 Query: 66 SVEKPLLGMLHRDGTPEDL-CD-CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + + GT + C+ C + + + +R + Y+ R RG L+ Sbjct: 73 GARGRVRSGFYAAGTHRIVTCEACLVEDPRARDILNDVARLASRFNVRAYDEDRGRGILR 132 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI-QPVHMAIMEG 182 + ++ + M+L V + +L R+ + L P++ I +N+ Q AI+ Sbjct: 133 HAVIRTGYATDEMLLTLVA-NGQRLPHEREFISTLQRLHPEITGIVLNVNQRRTNAILGR 191 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA------------------- 223 ET + L + ++ + I P SF+QTNP LY Sbjct: 192 ETRV-LAGAATMHDKLLNCTFEIGPTSFYQTNPEQTEVLYRLALEGVFGVCEKSNDERLS 250 Query: 224 ------------------------TARDWVRQL---PVKHMWDLFCGVGGFGLHCATPD- 255 T+RD L P++ + D +CG G G+ CA + Sbjct: 251 SGNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLR-ILDAYCGTGTIGI-CAAKEA 308 Query: 256 ------MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLV 306 ++L G++ IA AK++A ++ +F D+T+F +G ++V++ Sbjct: 309 GSRGIPVELIGVDQVENNIAMAKRNARANAVS-ARFVCDDATRFIAQEAKRGAPYDVVVL 367 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTA 364 +PPR G + +AP+ ++Y SCN T A+D+ L G++ ER+ DMFPHT Sbjct: 368 DPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASGYKPERIVPVDMFPHTK 427 Query: 365 HYEVLTLL 372 H E + LL Sbjct: 428 HVETVVLL 435 >UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31DJ1_THICR Length = 407 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 133/275 (48%), Gaps = 21/275 (7%) Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKA---LPWLHEQLPQLKVITV--- 170 R+R L +L ++++D F + ++ + + P L+E L Q + + Sbjct: 122 RRRARL---VLGKNKTDKEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTAVLPHA 178 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERF-----NDVPLWIRPQSFFQTNPAVASQLYATA 225 + +++++ + I+ ++Q + + N + L Q F Q N + Q+ A Sbjct: 179 SRALKEISVVDADNGIFWSDQAVDSSTWPSYGVNGLTLNFPAQGFVQVNAEMNEQMVNKA 238 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 DW+ + + DLFCGVG F L A ++ GIE ++ + A+ +A+ + F Sbjct: 239 LDWLDLNKEQRVLDLFCGVGNFTLPIAQQVKEVVGIEGETDLVQMAQHNASRAHCEQATF 298 Query: 286 QALDSTQFATAQG----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 D + T Q + VL++P R+G LC L + I+Y SCNA T+ + Sbjct: 299 YQADLFKDVTPQNWFRKQKYDRVLLDPGRQG-AYQLCKGLGQLKADKIVYVSCNASTLIR 357 Query: 342 DIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 D++EL G+++++ + DMFPHT+H EV+ L+K Sbjct: 358 DVKELEKQGYQLKKAIMVDMFPHTSHTEVMAQLIK 392 >UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaerococcus RepID=C7RGV6_ANAPD Length = 415 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 8/182 (4%) Query: 197 RFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDM 256 + D + F+Q N LY AR ++ + K + DLFCG G + A D Sbjct: 237 KVKDKSFKVSKDDFYQVNDYQIENLYQNARKYLEK--NKKLLDLFCGSGISSI--ALNDD 292 Query: 257 QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA--QGDVPELVLVNPPRRGIG 314 + GIEI AI AK++A LT +F ++ + + + V V+PPR G+ Sbjct: 293 NIVGIEINKSAIKDAKENAKINNLTDYKFIDKNANYIDQKFIEKEKIQTVTVDPPRAGLD 352 Query: 315 KPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 K + L+ + IIY SCN QT+A+DI+ G+ ++ ++ DMFP T H E + L+ Sbjct: 353 KEIIKTLAKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMHVEAIALI 412 Query: 373 VK 374 K Sbjct: 413 QK 414 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 103/411 (25%), Positives = 170/411 (41%), Gaps = 47/411 (11%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADF-----PVEEWCAPVSGPEQGFRNKAKM--- 61 +C C W Q+ K + ++LA E G ++ R + KM Sbjct: 127 QCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRYRNKMEFA 186 Query: 62 VVSGSVEKPLLGMLHRDGTPEDLCD----CPLYPASFAPVFAALKPFIARAG--LTPYNV 115 SG+ K ++G+ R G + + D C L V AA++ + RA L ++ Sbjct: 187 FASGTRGKTVVGLRPR-GANDSVVDLSGGCLLQSEEADRVLAAIRETLERADGRLEAFDR 245 Query: 116 ARKRGELKYILL-TESQSDGGMMLRFVLRSDTKLAQLRKALPW-----LHEQLPQL-KVI 168 G L+ + + T GG V + T K P + ++P + V+ Sbjct: 246 TSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVPGVVSVV 305 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 + A + E E + L E N + + SFFQTN A++L R+ Sbjct: 306 HTSGGTTTKAGSTKKVEAVFGENK-LVETLNGIDFELSSASFFQTNTEQAARLVRQVREA 364 Query: 229 VRQLPVKH--MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 K + DLFCGVG GL A+ ++ G E+ EA+ AK++A +T +F Sbjct: 365 CAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFY 424 Query: 287 ALDSTQFATAQG-------------DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSS 333 +D + ++G +P++V+ +P R G+ L L T+ R I+Y S Sbjct: 425 RVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALIAILRTIGARRIVYVS 484 Query: 334 CNAQTMAKDIRELP---------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 CN T A+D+ L + ++ V DMFPHT H E + +L ++ Sbjct: 485 CNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 157/386 (40%), Gaps = 45/386 (11%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPEQ-GFRNKAKMVVS-- 64 C C Q+ K L+ A F E+W AP+ P+ G+R KA++ V Sbjct: 84 CGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYV 143 Query: 65 GSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + E L+G R+ D+ C + L+ + G+ ++ + Sbjct: 144 KARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLH--GMAAFD------RIA 195 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL---PQLKVITVNIQP-----V 175 + + M+ R + +P E+L Q + + +QP V Sbjct: 196 QVEVACGDDTAAMVFR----------NMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTV 245 Query: 176 HMAIMEGETEIYLTEQQALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 H E + + L R + D+ + P F Q N + + A +W+ P Sbjct: 246 HRIWPESGGR----DDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQP 301 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + DLFCG+G F L A Q+ G+E + +++A L+ ++F D Sbjct: 302 GERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHGD 361 Query: 294 ATAQGDVPE---LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPG 348 T Q E +L++PPR G + +C YL+ I+Y SCN T+A+D + G Sbjct: 362 FTGQSWAKEGFDKILIDPPRSG-AEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNG 420 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ + + DMFPHT H E + L + Sbjct: 421 YRLVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 12/215 (5%) Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P L + + P HM G L E D+ +RP +FFQ N A A+ L Sbjct: 228 PVLAGVVFTVPPPHMLPPLG--------ADTLVEELADLTFLLRPTTFFQVNVAAAATLL 279 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 R + + DL+CG G F L A +++ G+E + A+A A++SAA ++ Sbjct: 280 NLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGVEEYAGAVADAERSAAVNHISN 339 Query: 283 LQFQALDSTQFATAQGDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 ++F S + A D P + V+++PPRRG + L APR I+Y SC+ T+A+ Sbjct: 340 VRF-ITGSAEAVLANLDGPFDAVVLDPPRRGCHPRVLHALIERAPRRIVYVSCHPATLAR 398 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D++ L G+ + R D+FP T H E + L++ Sbjct: 399 DLKTLIAGGYAVVRATPVDLFPQTPHIESVVALMR 433 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 131/277 (47%), Gaps = 25/277 (9%) Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 +N G LK I++ ++ D +M+ V+ +++ QL K L ++++ +K I +++ Sbjct: 199 FNEVNNTGFLKQIMIRNNEKDE-VMIVVVVNKNSQYNQLSKVLEEMYDENDCIKSIYISV 257 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW---- 228 + ++ G+ ++L Q L E + I P SFFQ N A +LY A ++ Sbjct: 258 KTEQNNVILGKN-VHLFGSQYLEEEMEGLKFKIYPNSFFQINKKQALKLYDAAINFLNEE 316 Query: 229 ---VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 + ++ K + D F G G + + ++ GIE + AK ++ E + ++F Sbjct: 317 NKNIDKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEF 376 Query: 286 QALDSTQFATAQGDVPEL--------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 + ++P++ ++ +PPRRGI + + I+Y SCN Sbjct: 377 VN------GKVEKELPKILKREDVGAIVFDPPRRGIEESALKSVVKNKIEKIVYISCNPA 430 Query: 338 TMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 T A+D++ L G+ + +V DMFP T H EV+ ++ Sbjct: 431 TFARDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMI 467 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 158/386 (40%), Gaps = 44/386 (11%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKAKMVV-- 63 G C C +QL+ K ++ L E W AP+ P G+R KA++ V Sbjct: 82 GVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKARLAVKY 141 Query: 64 -SGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARA--GLTPYNVARKR 119 +G ++ L+G T DL C + P A P +A L+ ++ Sbjct: 142 VAGKDDRVLVGFRETHSTLVADLASCRV----LDPRIGAHIPQLAETIRCLSIFD----- 192 Query: 120 GELKYILLTESQSDGGMMLR----FVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I + G++ R F + L+ + + + P K I P Sbjct: 193 -RVPQIEVAAGDQAVGLVFRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKASVRPIWP- 250 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 Q + A + V ++ P F Q NPAV L A + P Sbjct: 251 ------------RAPQLSYALPDHAVSVFFEPTDFTQVNPAVNHALVERAIALLALQPQD 298 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---- 291 + DL+CG+G F A + G+E + A+++AA +T + FQ D + Sbjct: 299 RVLDLYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIA 358 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---G 348 + A Q D VL++PPR G + L D + A R I+Y SC T+A+D L G Sbjct: 359 ELAHLQRDGVSRVLLDPPRSGAAEVLADIAALRAER-IVYVSCGPSTLARDAGRLVHEYG 417 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ + DMFPHTAH E +TL V+ Sbjct: 418 YRLAAAGVMDMFPHTAHVECITLFVR 443 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 5/184 (2%) Query: 194 LAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCAT 253 L E + + +SFFQ NP LY A + + DL+CG G G+ A Sbjct: 255 LEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAAK 314 Query: 254 PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE---LVLVNPPR 310 ++ GIEI EAI AK +A L+F +D+ A + E +V+V+PPR Sbjct: 315 IAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKESIDVVIVDPPR 374 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEV 368 +G + M P+ ++Y SC+ T+A+D+ L GF++E VQ D+FP T H E Sbjct: 375 KGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVDLFPQTVHVEC 434 Query: 369 LTLL 372 + L+ Sbjct: 435 IALI 438 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/381 (23%), Positives = 153/381 (40%), Gaps = 27/381 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE 68 G C C + Q+ K + LL V+ +S +RNK + + Sbjct: 77 GFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFSFFNNKG 136 Query: 69 KPLLGMLHRDGTPEDLCDCP---LYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 LG LH G P + F V +K F + YN G +++ Sbjct: 137 IADLG-LHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEGFFRHL 195 Query: 126 LLTESQSDGGMMLRFVLRS-----------DTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 +L ++ ++ ++ + +L++ ++ W V+ Sbjct: 196 VLRKAGNNNQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSNGRKSDAVLAD---- 251 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + +M G+ ++TE+ + + D I P SFFQTN LY + Sbjct: 252 -RLTLMCGKP--FITERLNIGGK--DYFFDISPFSFFQTNSKATEILYTEILRLLNPSKY 306 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + DL+CG G G+ A ++ G+E +AI AK++A + +F A D+ + Sbjct: 307 TVLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWI 366 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD---IRELPGFRI 351 + V+V+PPR G+ K + +L + IIY SCN T+A+D I E +I Sbjct: 367 KENKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCKI 426 Query: 352 ERVQLFDMFPHTAHYEVLTLL 372 + + DMFP T H E + LL Sbjct: 427 KEIIPVDMFPQTYHIETVVLL 447 >UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8 Tax=Thermococcaceae RepID=Y1259_PYRHO Length = 412 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/382 (24%), Positives = 163/382 (42%), Gaps = 39/382 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKA 59 +C+ + G+C C W EQL K K + +E A + G + FRN + Sbjct: 62 KCSHF--GKCGGCLWQGLRYREQLKLKEEIFKRITG---IE---AEIKGSPRIWYFRNIS 113 Query: 60 KMVVS-GSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 +++ + GM T ++ +CP++ ALK F+ + L P+N + Sbjct: 114 NFIITVNGIGFKEFGM---PKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNW--R 168 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQ-LRKALPWLHEQLPQLKVITVNIQPVHM 177 G++ Y+ + E + G +M+ + + L +A + LK + Sbjct: 169 EGDVHYLQVREGKFTGEVMVNIIAHVPLNYREALMEAFNFADSIYWSLKADKKDDPRGFP 228 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + E+ + I P FFQTN L + + V Sbjct: 229 TLVLG--------NEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSKV--- 277 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA--ELGLTRLQFQALDSTQFAT 295 DL+ G+G L+ A ++TG+E+ ++ AK+SA + T +Q +A D Sbjct: 278 LDLYSGIGTLSLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSINATFIQGKAED------ 331 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 A+ + E ++V+PPR+G+ K + P +IY SCN D R ++++ Sbjct: 332 AELEGYETLIVDPPRKGL-KEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVDD 390 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 L DMFPHT H E + LV++ Sbjct: 391 ALLIDMFPHTPHIEAVIKLVRR 412 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/373 (22%), Positives = 153/373 (41%), Gaps = 23/373 (6%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVSG 65 A C CQ QL K +K L V+ P+ G + +RNKA+ V Sbjct: 74 AKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGIEVK----PILGMDNPWYYRNKAQFPVKI 129 Query: 66 SVEKPLLGMLHRDGTPEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 K +G + C +C + VF+ ++ I + +L++ Sbjct: 130 KDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKIT---------LKMAQDLRH 180 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 + + S +D + + F+ +++ + L L + I N + ++ G+T Sbjct: 181 VFIRHSSTDE-IQVVFIGKNEKNIISLSDQLK---NTFANITSIVFNYNTRNDNVILGDT 236 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L + E + + ++FFQ NP LY+ A + D++ G Sbjct: 237 YKVLYGNDYIIEECLGNKVKLHFKAFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGT 296 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-TAQGDVPEL 303 G G+ + + G+EI EA+ A + L + D+T FA + D ++ Sbjct: 297 GTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDHKEDKIDV 356 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFP 361 + ++PPR+G+ + TM P I+Y SCN +T+++D++ G++ E VQ DMF Sbjct: 357 IFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFC 416 Query: 362 HTAHYEVLTLLVK 374 T E + L K Sbjct: 417 QTIGLECVAKLTK 429 >UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S9K0_LEPBA Length = 399 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 21/382 (5%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE-QGFRNKAKM----VV 63 G C C ++ ++L K ++K L + E V P + +R+K ++ + Sbjct: 15 GTCGGCNYLDIDYTKELRKKEQNIKELFKAYRHVEIKTIVPSPSPEYYRHKIQLPFGRRI 74 Query: 64 SGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 G+ LG+ +++ + D +C + V A+K + R GL PYN KRG + Sbjct: 75 VGNKTLLTLGLFNKEASFVLDQTECQIQDPGLTEVALAVKQWARREGLLPYNEKSKRGMM 134 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE----------QLPQLKVITVNI 172 KY++ +S + G +++ V + L + A LH + +L I NI Sbjct: 135 KYLVARKSITTGEIIVGIVTAKE-DLPHAKDASKRLHTAIQNRIGKTGKFGKLVGIIHNI 193 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 H + G E L + + E F + +F Q NP LY D + + Sbjct: 194 NTKHTTMALGREEHLLWGRPYIHEHFGKHKFRVGLSTFLQVNPIQTPSLYNLVLDEIEK- 252 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + D + G+G A ++ GIE + A +S + ++F+ + Sbjct: 253 -DSRVIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFRKGRVAE 311 Query: 293 -FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD-IRELPGFR 350 T G + ++++PPR G+G + + + M + I+Y SC+ ++ +D I + Sbjct: 312 VLPTLYGKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLREDSILLTKQYF 371 Query: 351 IERVQLFDMFPHTAHYEVLTLL 372 + +Q DMFP T H E + + Sbjct: 372 LNSLQPVDMFPRTDHVETVAVF 393 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 ++Q + + +N I P SFFQ NP A +L++ A D++ P +++ + GVG F Sbjct: 253 VQEQLMGKVYN-----ITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSGVGAFT 307 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNP 308 L A + E EA+ A ++AA + +QF A + A + V+V+P Sbjct: 308 LLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSLQQKINKVVVDP 367 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHY 366 PR G+ + + ++ + P I+Y SC+ T+A+DI G+ + +Q DMFP T H Sbjct: 368 PRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHIQAIDMFPQTTHV 427 Query: 367 EVLTLLVKQ 375 E + LL+K+ Sbjct: 428 ECVALLIKE 436 >UniRef50_Q6M9M7 Uncharacterized RNA methyltransferase pc1998 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1998_PARUW Length = 383 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/337 (23%), Positives = 151/337 (44%), Gaps = 19/337 (5%) Query: 50 GPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCD--CPLYPASFAPVFAALKPFIAR 107 G G+R +AK+ V G+ + P++G+ + G+ E L C ++ ++ ++ R Sbjct: 50 GTLTGWRCRAKLAVRGTKQNPIIGLF-KKGSHEALNIPFCLVHHPRINQAVTMIQNWMER 108 Query: 108 AGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR----SDTKLAQLRKALPWLHEQLP 163 L PY + G+L+Y+ ++ G + + FVL S + RK L L ++ Sbjct: 109 HQLNPYQEHSQAGDLRYLQFVVERASGKVQIVFVLNFKDFSSPESQIWRKLLLELAQETT 168 Query: 164 Q--LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQL 221 I VN P + + + + L E F+ V + +P +F Q N + +L Sbjct: 169 NAFWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKL 228 Query: 222 YATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIAC----AKQSAAE 277 + WVR+ + + F GVG GL A + EI + C +Q ++E Sbjct: 229 LKKVKSWVREKA--KVVEFFAGVGTIGLSVAAKCSWIKCEEINPHSKECFYYAKQQLSSE 286 Query: 278 LGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 + + + QG + V+V+PPR+G+ + + L+ + +IY SC Sbjct: 287 ISQKIMFYTGSADENLNLLQG--ADTVIVDPPRKGLSRKFIEGLTQSSVDQLIYVSCGWD 344 Query: 338 TMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 + K+ L G+ +++++ + +FP + H E+LTL Sbjct: 345 SFKKNKETLISQGWNLKKLEGYSLFPGSEHIELLTLF 381 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 53/370 (14%) Query: 9 GRCRSCQWIMQPIPEQLSAKTA----DLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVS 64 GRC C + P QL+ K A +++ L P EE A VS G+RN+ ++ Sbjct: 65 GRCGGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEE-IAVVSSEPFGYRNRVQL--- 120 Query: 65 GSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 VE+ +G +R+ LC P + AA++ +AR ++ Sbjct: 121 -HVEESRIG--YREARSHKLCAVGQCPVGSPKIEAAIRAL--------NEMARDSRWPRF 169 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 + E SD + VL ++ +A R+ W E++P ++EG Sbjct: 170 MKSIEVFSDENQVQLNVLETERPVA--RRFFDWCGEKIP--------------GMVEGAL 213 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 + RF + SFFQ N + +L A + DL+ GV Sbjct: 214 D--------YEGRFR-----VSSNSFFQVNRFLIDRLVEVA---IEGAEGDTALDLYAGV 257 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELV 304 G L A ++T +E + A+ + +A GL ++ + ++ A P+LV Sbjct: 258 GLLSLPLARKFREVTAVESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAAPDLV 317 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 +++PPR G+GK + LS + PR + +C+ T+A+D+ L G+R+E++ L D+FP Sbjct: 318 VLDPPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQ 377 Query: 363 TAHYEVLTLL 372 T H E + L Sbjct: 378 TYHLETVVRL 387 >UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8K4_9ACTN Length = 609 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 142/350 (40%), Gaps = 60/350 (17%) Query: 85 CD-CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR 143 CD CP + + AR + YN + G L++ +L S+S +ML V R Sbjct: 168 CDFCPSEVPGARKILNFIAKDAARLNIKAYNENTQIGILRHAILRFSRSCNEIMLVIVTR 227 Query: 144 SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPL 203 + AQ + + + P + + N+ P + M G + L + ++ Sbjct: 228 TRN-FAQKKLLVQDILSAYPHITTVVQNVNPKNTNAMLGSYNVVLFGSGKIHDKLLGCTF 286 Query: 204 WIRPQSFFQTNPAVASQLYATARDWVRQLP------------VKH--------------- 236 I P SFFQTNP LY TA D ++++ V H Sbjct: 287 EIGPVSFFQTNPEQTEILYQTAIDGIKRICNTGKSDCDTLSYVSHGASIDSKRLDTSGLE 346 Query: 237 --------------------MWDLFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQS 274 + D +CG G G+ A+ + + G + ++I AK++ Sbjct: 347 HAHGKAQQVTPEQADKHTIRIMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKN 406 Query: 275 AAELGL-TRLQFQALDSTQF----ATAQGDVP--ELVLVNPPRRGIGKPLCDYLSTMAPR 327 L TR + D+T+F A A V E ++++PPR G +++ P+ Sbjct: 407 RRLNHLKTRCVYSCEDATRFMQDFAYASNGVSRFEAIIMDPPRAGSTPEFIKAAASLRPK 466 Query: 328 FIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 I Y SCN QT +D+ E G+ +E + DMFPHT H E + LL +Q Sbjct: 467 CIAYISCNPQTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQ 516 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 5/196 (2%) Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 GE L ++ L F+ + L + P++FFQ N A LY A V P + + + Sbjct: 240 GERTKLLFGKKHLLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVD--PCHILVEAY 297 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--FATAQGD 299 CG+G L ++ Q+ GIE+ AI AK++A L F+ D+ + A+ Sbjct: 298 CGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAKKQ 357 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFD 358 + +L++PPR G+ + + + + P IIY SCN T+AK+I L ++I +Q FD Sbjct: 358 KIDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTIQAFD 417 Query: 359 MFPHTAHYEVLTLLVK 374 +FP T H E L LL K Sbjct: 418 LFPQTPHVECLCLLSK 433 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 5/201 (2%) Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + ++E T Y++ Q L ++ V + P +FFQ N A ++ V K Sbjct: 218 VVVIEKNTCHYISGPQRLLDKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLV-DFSGKT 276 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D FCGVG L+ A ++ G+E AI A+ +A E G+ ++F + A Sbjct: 277 VLDAFCGVGSIALNLARQAERVIGVESYEPAIHDARSNAIEAGIYNVEF-IHGFCERVVA 335 Query: 297 QGDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 + D P ++++++PPR G K L S ++PR I+Y SCN T+A+D+ G+R Sbjct: 336 RIDEPIDVIVLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLL 395 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 +Q DMFP T H E + L+ + Sbjct: 396 IQPIDMFPRTYHVETVVLMSR 416 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 103/386 (26%), Positives = 157/386 (40%), Gaps = 44/386 (11%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKT----ADLKNLLADFPVEEWCAPVSGPEQGFRN 57 +C YD RC C EQL K L+ L P E P++G E +R Sbjct: 68 RCPFYD--RCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQP-EHVLLPLAGKEWRYRR 124 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYN 114 +A++ V E ++ + + D+ DC + A L F+ L P Sbjct: 125 RARLAVH--YENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLR--ALLPVK 180 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 V ILLT + + LR TK ++AL P N+ Sbjct: 181 VDE-------ILLTAGEKVAALTLR------TK----KRALS------PAWGEKWANLAG 217 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 H + E + ++ + + V L P F Q N +V L T W+ L Sbjct: 218 AHWQLWENDRCLFGEPNDLYYQPISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEK 277 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDSTQF 293 + DLF G+G F L A ++T +E + + AAE L +RL+ Q +D Sbjct: 278 SEVLDLFSGLGNFSLPLAYKGARVTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSV 337 Query: 294 ATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PG 348 + AQ + L++PPR G + L P I+Y SCN T+A+D+ L G Sbjct: 338 SAAQMKSWQSAKSWLLDPPRAG-AHAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKG 396 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 F +ER Q+ +MF H+AH E + L+ + Sbjct: 397 FHLERGQVVNMFAHSAHIESVILMTR 422 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 8/175 (4%) Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 Q FFQ N A+ + + + + D +CG G F L A+ QL G++ EA Sbjct: 253 QGFFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLFSLFLASSARQLFGVDADGEA 312 Query: 268 IACAKQSAAELGLTRLQFQALDSTQ-----FATAQGDVPELVLVNPPRRGIGKPLCDYLS 322 + CA ++ ++ G++ +F A D + F Q V ++V+++PPR G + + L Sbjct: 313 VHCAAENLSKEGISNAEFFAGDVGEILRHTFLKTQQSV-DIVVLDPPRIGCSSDVLEALK 371 Query: 323 TMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ P IIY SCN T A+D+R L G+ + +Q DMFP T H E++ LL ++ Sbjct: 372 SLGPARIIYISCNPATQARDVRRLRDSGYILRDLQPIDMFPQTKHIEIVGLLERE 426 >UniRef50_D1J8P5 Putative uncharacterized protein n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8P5_MYCHP Length = 443 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 20/331 (6%) Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDC-PLYPASFAPVFAALKPFIARAGLTP 112 +RNK + V+ +G ++ + + PL + L + + L+ Sbjct: 123 NYRNKITLHVNYKNNNIYIGFYKKNSNKLVIQNSLPLCHDELDKYYKELISALKQQILSK 182 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 N K +L+ I L S + + F++ + K K L L + ++ N+ Sbjct: 183 DNWI-KELKLRKITLRHSNWSHNIEVIFIIENPNK-----KGFDLLKNNL--IFLLKPNV 234 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 + ++ +I+ + +++ ++FN + + SFFQ N S +Y + ++ Sbjct: 235 ISIQCQYIKESKDIFTSLYKSMPQQFNINNKIFNVNNDSFFQVNEEQTSLIYNQIKKFID 294 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 Q + D++ GVG G+ D QL IEI A CAK + + + ++S Sbjct: 295 QENSTKIIDVYSGVGSIGISVCGNDSQLELIEINKSACECAKININQNLINPKLVDIINS 354 Query: 291 TQ---FATAQGDVPE--LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR- 344 + F + + E +V+ +PPR G+ + L +IY SCN TM +D++ Sbjct: 355 SAQDFFNKKEAEYFEKSIVIFDPPRTGLTNKEINMLEKCNS--VIYMSCNPHTMIRDLKY 412 Query: 345 -ELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 E G+RIER+ +DMFP T H E+L+LL K Sbjct: 413 FEEKGYRIERLIPYDMFPQTYHIEMLSLLKK 443 >UniRef50_D0LWB0 (Uracil-5)-methyltransferase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWB0_HALO1 Length = 489 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 107/391 (27%), Positives = 159/391 (40%), Gaps = 29/391 (7%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPEQGFRNKAKMVVSGS 66 GRC C W P QL+ K A + AD VE + G+RNK K V+ Sbjct: 97 GRCGGCVWQHLAYPAQLAHKRARVARAFADAGLAVEVAAPLAAPATTGYRNKGKYVIGTG 156 Query: 67 VEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 + +LG R D C + + V L+ +A + L Y+ +RG L+Y Sbjct: 157 ADGLVLGAFAPRSHVVVDTAGCQVLEPAIERVARHLRTALAASRLPVYDERTRRGTLRYA 216 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK--------VITVNIQPVHM 177 +L S +DG +++ V+ A + + L L+ V+ N Sbjct: 217 IL-RSGADGRVLVGVVIAGAGAGAGAPAEA-EIADALAPLRALDEVAGAVLLHNDTRSGA 274 Query: 178 AIMEGETEIYLTEQQALAERFN------DVPLWIRPQSFFQTNPAVASQLY---ATARDW 228 I GE L + ER + V + + ++FFQ + A A +LY ATA Sbjct: 275 LIDGGERARPLFGASVVIERLDGPGGPGSVAVALGIEAFFQVHRAQARRLYREVATAAAR 334 Query: 229 VRQLPV---KHMWDLFCGVGGFGLHCATPDMQLTGIEIA-SEAIACAKQSAAELGLTRLQ 284 +R + DL+CGVGG A + G+E S A +A + Sbjct: 335 LRGPGADGDRAALDLYCGVGGVAFALAGDGGHVVGVESNPSAVAAARDAAAGVGAGANID 394 Query: 285 FQALDSTQFATAQGDV-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 F D+ F D+ P LV VNPPR G+ D L AP ++Y SC ++A+D+ Sbjct: 395 FALGDAADFGRLSRDLQPSLVAVNPPRAGLRPEARDALLAAAPPALVYVSCGPSSLARDV 454 Query: 344 REL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 G+ IERV D+ P T E + L Sbjct: 455 AAFTAAGYEIERVLPVDLMPGTPQIETVATL 485 >UniRef50_B6KDA8 tRNA (Uracil-5-)-methyltransferase domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KDA8_TOXGO Length = 426 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 92/185 (49%), Gaps = 17/185 (9%) Query: 204 WIRPQSFFQTNPAVASQLYATARDWVRQL--------PVKHMWDLFCGVGGFGLHCATPD 255 W R FFQ N V L + R+ +R L P + + D +CGVG F L C Sbjct: 199 WYRAGDFFQVNRRVLPLLVSHVREQLRDLREVPGQQPPHRRLLDCYCGVGLFALACHDDF 258 Query: 256 MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF------ATAQGDVPEL-VLVNP 308 ++ G ++ S +I AK +A R +F+ D+ F + D L V+++P Sbjct: 259 DEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFESFSAGHSSSDKSRLFVVLDP 318 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE-LPGFRIERVQLFDMFPHTAHYE 367 PR+G L + P I+Y SC+ T A+D++ LP + ++ +Q FDMFPHT H E Sbjct: 319 PRKGCDSEFLLSLLKLKPERIVYISCHPATQARDLKAVLPLYTVKNIQPFDMFPHTRHIE 378 Query: 368 -VLTL 371 V+TL Sbjct: 379 CVITL 383 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 17/377 (4%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG--PEQGF---RNKAKMVV 63 G C C +QL K + N++ + AP++ P F R K Sbjct: 72 GYCGGCSLQNLDYEQQLVLKKTKVYNIMK--KIGRIDAPINSVLPNFAFYRYRQKVHFTF 129 Query: 64 SGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 S K +G R + DC + S V + + L Y G L+ Sbjct: 130 GSSQNKLAIGYFDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAY--FNDAGVLR 187 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 ++++ +S + G + V+ + KL K + P+++ +T + P + G+ Sbjct: 188 HLVVRKSSTTGEIQ---VVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGK 244 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 + + E + + P SFFQ NP A ++Y A D++ ++D + G Sbjct: 245 GTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSG 304 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FATAQGDV 300 VG L A + G+E +A+ AK +A G+ + F A + + +G Sbjct: 305 VGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPWLLKKGYR 364 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFD 358 ++++PPR G+ K + + + + P I+Y SCN T A+D++ L G+ + D Sbjct: 365 FNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPVEITPVD 424 Query: 359 MFPHTAHYEVLTLLVKQ 375 MF T H E + LL K+ Sbjct: 425 MFSQTMHVENVVLLKKK 441 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 159/384 (41%), Gaps = 40/384 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEE--WCAPVSGPEQGFRNKA 59 C Y+ +C CQ +Q+ K + L F ++E W AP+ +R A Sbjct: 81 CEHYN--QCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSA 138 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + + + +R + + +CP+ FA VF I N Sbjct: 139 RLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLI--------NQH 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFV--LRSDTK--LAQLRKALPWLHEQLPQLKVITVNI 172 + + ++ L + +++R + D K +AQ W + +VI Sbjct: 191 KALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLVWQSESEVI---- 246 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + H+A+ Y E+ L F +F Q N +V + A++W+ Sbjct: 247 EHSHLAM-----PFYALEELGLKFEFG-------LNNFIQVNASVNQAMLKQAQNWLALK 294 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST- 291 +++ DLFCG+G F L A + G+E + A+A A Q+A +T QF D T Sbjct: 295 GDENVLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTN 354 Query: 292 QFATAQGDVPEL-VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPG 348 + TA L VLV P R + + L + I+Y SC+ T+A+D I G Sbjct: 355 KIETASWFNKNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAG 414 Query: 349 FRIERVQLFDMFPHTAHYEVLTLL 372 F + ++ L +MFPHT H E + L Sbjct: 415 FELHKIGLMNMFPHTGHIETMALF 438 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 157/378 (41%), Gaps = 33/378 (8%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKAK--MVV 63 A RC CQ P+ Q AK L L E E+ + G G+R + + M+ Sbjct: 85 ASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRVRLSMLF 144 Query: 64 SGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 G +++ +G ++ + C + + + + L ++R P N L Sbjct: 145 DGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFS-QPKN-------L 196 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +I L + + M+LR+ KL + + L L V + + + + + Sbjct: 197 GHIELVAADNGVAMLLRY----SGKLTENDRTL---------LLDFAVR-EELMLFLQDD 242 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 E + Q + +++ L + F Q N + ++ A DW+ H+ DLFC Sbjct: 243 EKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLDLFC 302 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 G+G F L + GIE S + AK +A +QF D Q + E Sbjct: 303 GMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVWATE 362 Query: 303 ---LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 +L++PPR G L + L + I+Y SCN T+ +D L +R+++V + Sbjct: 363 PFNKILLDPPRTGAAFAL-NALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMI 421 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT H E +TL KQ Sbjct: 422 DMFPHTGHLESITLFEKQ 439 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/385 (22%), Positives = 167/385 (43%), Gaps = 26/385 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQG------FR 56 C +YDA C CQ L+ K +K L D V+ + A + G +R Sbjct: 75 CPVYDA--CGGCQVQHFDYNAMLNQKKDIIKKAL-DRYVKRYDAHIISDTIGMDNPKNYR 131 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NKA + + K GM R+ + C + +F + + R + Y+ Sbjct: 132 NKASLPLRLIDNKNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDP 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVL-RSDTKLAQLRKALPWLHEQLPQL-KVITVNIQ 173 + G + + ++ +++ + + F+L ++ L L L LH ++ + KVI +++ Sbjct: 192 VLQTGIISHAIVRITENLNEVQVTFILSKAFDGLDNLVHELVKLHPEIMSIYKVINPDVR 251 Query: 174 PVHMAIMEGETEIYLTE-QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + +I+L ++ + E+ + P +FFQ N + A + Y + + Sbjct: 252 QSYFT-----EDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIK 306 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 P + + D + G+ + + IEI +A+ AK S L + + Sbjct: 307 PTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKIS---LDQNHIDNVTVIENN 363 Query: 293 FATAQGDVPEL----VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR-ELP 347 F A ++ ++ +L +PPR G+G+ + + P+ ++Y SCN T+AKD+ L Sbjct: 364 FEDALDNLKDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLLE 423 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLL 372 + ++ + DMFP+T+ E +TLL Sbjct: 424 DYDLKHITPIDMFPYTSLVESITLL 448 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 124/280 (44%), Gaps = 17/280 (6%) Query: 110 LTPYNVARKRGELKYILLTESQS--DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKV 167 L+PY+ G LK+++L ++ G + L + + +L K L +PQ+ Sbjct: 272 LSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSIPQVVS 331 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 I N+ GE E L + + E + I SFFQTN A LY + Sbjct: 332 IMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEE 391 Query: 228 --WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 ++ + + DLFCG G GL A + G E+ +AI A ++A G+ F Sbjct: 392 SAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATF 451 Query: 286 QALDSTQFATAQGD---VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 D + G+ P++V+ +P R G+ L +L + IIY SCN T A+D Sbjct: 452 IQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARD 511 Query: 343 I---------RELPG-FRIERVQLFDMFPHTAHYEVLTLL 372 + + L G +++ VQ DMFPHT H E + LL Sbjct: 512 LDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551 >UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PA00_USTMA Length = 574 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 15/210 (7%) Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP------- 233 E +TE+ + + ER +FFQ N ++ L R+ + Sbjct: 363 ELDTEVVTDHKATVKERVLTTKFESPAGTFFQNNRSILPSLLDYVREAITSASSTTGEDS 422 Query: 234 --VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 +++ D +CG G F L A+ +++G+EI+SE+I A ++A G+T +F A ++ Sbjct: 423 AQARYLVDAYCGSGLFSLCLASLFREVSGVEISSESIKYATKNAELNGITNTKFLAGNAE 482 Query: 292 Q-FATAQGDVPEL-VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--- 346 F + + V+++PPRRG + L +AP+ I+Y SCN T A+D+ +L Sbjct: 483 DIFGKIEYPADKTTVIIDPPRRGCDQEFIRQLVNLAPKHIVYVSCNVHTQARDVGQLISK 542 Query: 347 -PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 P ++I+ V+ D+FP T H E + +L ++ Sbjct: 543 DPRYKIKSVRGADLFPQTHHVEGVAVLERR 572 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 164/388 (42%), Gaps = 49/388 (12%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLL---ADF-----PVEEWCAPVSGPEQGFRNKAKMV 62 C C + P Q K +LK L AD+ P+ + P+S +RN K+ Sbjct: 71 CGGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLS-----YRNSCKLP 125 Query: 63 VSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + GM RD + + C ++ A+ + L Y+ +K G Sbjct: 126 FGEEYGELYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYDDKKKTG- 184 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH----- 176 Y L + D + + FV + L++ ++H+ + QL+ + Q V Sbjct: 185 --YRTLVMKEFDSKIQIIFVTGKEN-LSE-----EFIHD-VTQLEGVVSIWQSVKTETKR 235 Query: 177 -----MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 M + GE +++L + D+ L + P+SFFQ N + LY +DW+ + Sbjct: 236 EVFGDMRFIWGEEKMHL--------QLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPR 287 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 K + + G+G L ++ G+E +A+ A ++A + F D+ Sbjct: 288 --SKTTVEAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAG 345 Query: 292 Q---FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG 348 + DV L+ V+PPR G+ + + + + +IY SCN T+AKD+ L Sbjct: 346 SALAHLVQEKDVDTLI-VDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKK 404 Query: 349 -FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +RI ++Q DMF T H E +TLLV+ Sbjct: 405 EYRIVKIQPVDMFSQTPHVESVTLLVRN 432 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 159/396 (40%), Gaps = 36/396 (9%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFP---------VEEWCAPVSGPEQGFRNKAK 60 RC C W QL+ K + +++ + C P E+ +RNK + Sbjct: 78 RCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTER-YRNKME 136 Query: 61 MVVS-GSVEKPLLGMLHRDGTPEDLCD------CPLYPASFAPVFAALKPFIARAG---- 109 G+ + ++ L G DL + C L V + + G Sbjct: 137 FAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRGCRAHLDSNGNSSL 196 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFV-LRSDTKLAQLRKALPWLHEQLPQLK-V 167 L +N G L+ + + + + G + V + + T+ AL L E + +++ V Sbjct: 197 LDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAALRGLAEAIAKVRGV 256 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 + GE L+ L + V + SFFQTN A +L A D Sbjct: 257 ASSGGGDADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVED 316 Query: 228 --WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQF 285 + + DLFCGVG GL A + G E+ EA+ A+++A G+T F Sbjct: 317 ACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNATF 376 Query: 286 QALDSTQF-ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + D + A+ G P++V+ +P R G+ + L L ++ I+Y SCN T A+D+ Sbjct: 377 RRGDLAKLKASLPG--PDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNPATQARDLL 434 Query: 345 ELPG--------FRIERVQLFDMFPHTAHYEVLTLL 372 L G + + DMFPHT H E + +L Sbjct: 435 RLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVL 470 >UniRef50_B0S8Y5 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S8Y5_LEPBA Length = 383 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 13/142 (9%) Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 +LFCG G G+ L GIE +I A ++A G Q+ D +G Sbjct: 244 ELFCGCGTIGIALREKITSLYGIESHDNSIQYAIENAKRNGTNSYQYVTKD-----LYKG 298 Query: 299 DVPE------LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR--ELPGFR 350 +P+ + +VNPPR G+ K + D + + P+ +IYSSCN T+ +D+R E G+R Sbjct: 299 YLPKELKQYAIWIVNPPRSGLSKGIIDSTTKLKPKIMIYSSCNPSTLQRDLRLLEAVGYR 358 Query: 351 IERVQLFDMFPHTAHYEVLTLL 372 ++ + LFD FP T HYEVL L Sbjct: 359 MDSMSLFDFFPRTNHYEVLVRL 380 >UniRef50_D0P3V9 RNA methyltransferase n=2 Tax=Phytophthora infestans T30-4 RepID=D0P3V9_PHYIN Length = 545 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 99/216 (45%), Gaps = 35/216 (16%) Query: 190 EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM-WDLFCGVGGFG 248 E L+ RF + SFFQ N AS LY + + LP K + WDLFCGVG G Sbjct: 328 EDSILSHRFE-----VTFDSFFQPNSNQASVLYREIQRMMAALPKKPVVWDLFCGVGSIG 382 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLT--RLQFQALDSTQ-------------- 292 + ++ G E+ A+ AK +A G + +QF +D + Sbjct: 383 ICMGAYAEKVVGFELVDAAVERAKVNARLNGYSADHMQFFCVDLAKSWQEEEFLDRIASH 442 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR------ 344 ++ ++P++V+V+PPR G+ K L L +APR I Y SCN + A D+ Sbjct: 443 SDGGSSSSNLPDIVIVDPPRAGLQKKLIKMLRRLAPRHICYVSCNPHSQAPDLEAFCAKV 502 Query: 345 -----ELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 E+ +R+ +Q DM PHT H E + L+ Sbjct: 503 KPEMGEVGTYRVRYLQPVDMLPHTPHIETVAWLLSH 538 >UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 n=14 Tax=Chlamydiaceae RepID=Y883_CHLCV Length = 401 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 5/196 (2%) Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 E ++ + L + N +RP+SFFQ +++ A++++ + + DL+CG Sbjct: 203 EPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIEIAKEFMNPQGSETLLDLYCGA 262 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSA-AELGLTRLQFQALDSTQFATAQGDV--P 301 G G+ + ++ G+EI +AI AK++ ++ D+ F D P Sbjct: 263 GTIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENLIEVYLEDAKTFCRRHQDCPPP 322 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDM 359 ++V+++PPR GI + YL + P+ IIY SCN + ++ L G+ I++VQ D Sbjct: 323 DVVVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQFEECCSLISAGYHIKKVQPLDQ 382 Query: 360 FPHTAHYEVLTLLVKQ 375 FPH+ H E + LL ++ Sbjct: 383 FPHSPHLENIILLERE 398 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 11/256 (4%) Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 + L I L ES + +ML F L++ ++++ + + NI+ + + Sbjct: 187 KNALTSITLRESYVNKKIMLYFTASKAFDLSK-----QFVNDIAKEFE----NIETIMVI 237 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + + YL+E+ L ++ SFFQ N +LY D + K + Sbjct: 238 VNDKVVYSYLSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVVL 297 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D +CG+G L A ++ G+EI EA+ AK++A + + +F + D + + Sbjct: 298 DAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTIDSIN 357 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 + + V+V+PPR G+ + + + P I Y SCN TM +DI +L G+ + ++ Sbjct: 358 EKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRP 417 Query: 357 FDMFPHTAHYEVLTLL 372 DMF T H E++ +L Sbjct: 418 CDMFSQTYHIEMVAVL 433 >UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y248_PARUW Length = 434 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 127/293 (43%), Gaps = 25/293 (8%) Query: 87 CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDT 146 CP++ P+ + L+ FI+ T N ++ G L LL S + +F ++ Sbjct: 161 CPIFNNLHDPIISILQKFIS----TLPNPNQQDGRLT--LLKNQNSQYILSFQFCSLNEL 214 Query: 147 KLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIR 206 ++AL E+ P I V I +E ++ ++ Sbjct: 215 NRILFQEAL----EKYPIFSGILVTSPKKQWIIGNPYSE----------QKIENLIFRFT 260 Query: 207 PQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASE 266 PQ+F Q +P + +Y QL K + DL+CG G L A+ +TGIE S+ Sbjct: 261 PQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTGIEYNSD 320 Query: 267 AIACAKQSAAELGLTRLQFQALDSTQ---FATAQGDVPELVLVNPPRRGIGKPLCDYLST 323 AI AK+++ L ++F D + +LV+VNPPR G+ K + L + Sbjct: 321 AIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQKCVDLVIVNPPRIGLSKSVIKILMS 380 Query: 324 MAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 P +IY SC T+A+D+ L + I +DMFP T+H E L L K Sbjct: 381 ALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFPQTSHVETLVHLKK 433 >UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDX8_PHATR Length = 378 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 10/174 (5%) Query: 209 SFFQTN----PAVASQLYATA-RDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEI 263 +FFQ N P + + A A D Q + H+ D +CG G F + A + GIEI Sbjct: 197 NFFQNNYYVLPLMVEHVLARAVGDDHEQPTMTHLADCYCGSGLFAIAAAPSFATVVGIEI 256 Query: 264 ASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE---LVLVNPPRRGIGKPLCDY 320 +A+ A+ +A G+ QF A S D P +V+++PPR+G Sbjct: 257 NDKAVREAQANAERNGIDHCQFLAASSENIFAEIRDFPRDTTVVVLDPPRKGCSVEFLSQ 316 Query: 321 LSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 L APR I+Y SC+ T A+D + + G+RI VQ FD+FP T H E L +L Sbjct: 317 LYDFAPRRIVYMSCDPTTQARDAQGIVAAGYRITSVQPFDLFPQTRHIECLMVL 370 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 25/255 (9%) Query: 130 SQSDGGMMLRFVLRSDTK-----LAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 S SDG +++FV + + L LR +L E+L + + ++ GE+ Sbjct: 180 SSSDGEALVKFVYQKRVRRFPLGLKHLR---SFLSEKLKGAGIYHRKDDLLKRDVLLGES 236 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH--MWDLFC 242 IY E + + + SFFQ N L D V Q H DLFC Sbjct: 237 YIY--------EEYGGIKFRVSMDSFFQVNVYQVENLL----DAVLQNIGDHEKAVDLFC 284 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV-P 301 GVG L A ++ GIE A+ A + + +F +D+ + ++ P Sbjct: 285 GVGTLTLPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDANRSGGFIAELKP 344 Query: 302 ELVLVNPPRRGIGKPLC-DYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQLFDM 359 +LV+++PPR G+ L +L T + + IIY SCN T+A+D+ L + +E+V + DM Sbjct: 345 DLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMIDM 404 Query: 360 FPHTAHYEVLTLLVK 374 FP T H E + +L K Sbjct: 405 FPQTYHIESVVVLQK 419 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 28/339 (8%) Query: 44 WCAPVSGPEQGFRNKAKMVVSG-SVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK 102 W AP+ GP +R KA++ + + + LG R+ + + P P+ A+ Sbjct: 163 WQAPLVGPRPQYRRKARLAIDARNPDNIKLGF--REANSNKVVNLDTCPILVNPLSTAIG 220 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 P R L Y+ AR G +I L + ++++ + L + A + Sbjct: 221 PL--RNALEGYDSARHIG---HISLIAGDNRAQVVIKHTKALEDALIETVDAFA----KA 271 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLT-EQQALAERFNDVPLWIRPQSFFQTNPAVASQL 221 L V+ N Q ++ E + I T + +++ ND F Q N V ++ Sbjct: 272 LGLDVVLENKQGRLRSVGEAQGLIMHTVDGCSISPSAND---------FIQINKVVNEKM 322 Query: 222 YATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 A W+ P + + D F G+G F L A + IE +E + AK +A + G+ Sbjct: 323 INQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAIEGVAEMVLRAKDNAQQQGIE 382 Query: 282 RLQFQALDSTQFATAQGDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 +++ LD A + + + VL++P R G +C L P+ I+Y SCN T Sbjct: 383 NVEWLHLDLANKANVEASLQQGFDKVLLDPSREG-ALTVCHALVKALPKTIVYVSCNPST 441 Query: 339 MAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++D + L G+ +E+ + +MFP T H E++ L ++ Sbjct: 442 FSRDAKVLINGGYEMEKAGVAEMFPFTHHMEMMALFTQR 480 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 90/388 (23%), Positives = 157/388 (40%), Gaps = 37/388 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA---DFPVEEWCAPVSGPEQGFRNKA 59 C ++DA C CQ L + LK ++ W AP++GP +R KA Sbjct: 119 CPVFDA--CGGCQLQHIKPDAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRKA 176 Query: 60 KMVVSGSVEKPL-LGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ + + LG R+ ++ + P P+ + P R LT + AR Sbjct: 177 RLAIDARNPNQIKLGF--REANSSNVINAETCPILVDPLSKLIGPL--RDALTGFESARH 232 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKL-AQLRKALPWLHEQLPQLKVITV-----NI 172 G + I G V++ L A+L A+ L + V + N Sbjct: 233 IGHISLIA-------GDNTSHLVIKHTKALEAELIDAVSELVNTSSSVGVCGIELKLENK 285 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 Q ++ G + T N + F Q N V ++ A W+ Sbjct: 286 QAQIRSVGRGTDMVMNT--------VNSCSISPSANDFIQINKVVNEKMVNQAIGWLNPE 337 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 P + + D F G+G F L A ++ +E +E + AK +A + G+ +++ LD Sbjct: 338 PNERVADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQQQGIENVEWLHLDLAD 397 Query: 293 FATAQGDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--P 347 + + + VL++P R G +C L P+ I+Y SCN T ++D + L Sbjct: 398 KTNVEASLQLGFDKVLLDPSREG-ALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDG 456 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 G+ +E+ + +MFP T H E++ L ++ Sbjct: 457 GYEMEKAGVAEMFPFTHHMEMMALFTRK 484 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 104/378 (27%), Positives = 146/378 (38%), Gaps = 36/378 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKT---ADLKNLLADFPVEEWCAPVSGPEQGFRNKA 59 C +Y RC C W Q I Q AK A+ +A E A +G +R+ A Sbjct: 75 CPVYQ--RCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHYRSVA 132 Query: 60 KMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V G +G G + C + LKP + GL Sbjct: 133 RVHVDGQ----RVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLPLIGL-------- 180 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 + I L S +DG + + + + A A W+ I V A Sbjct: 181 ----REISLRLSTTDGTIHGHLIGQGQS--AWRSWARRWMSAD--------ATIAGVSSA 226 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 EG + L + L E+ DV L I P SFFQ N A + ++ + Sbjct: 227 TREGW--MALAGAEYLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLL 284 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D FCGVG F L A GIE AI A+ SA L+ + + Sbjct: 285 DGFCGVGTFLLPLAHNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAILPQLK 344 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 +L +V+PPRRG+ + L P I Y SC+ T+A+DI+ L G+ I+ Q Sbjct: 345 QQFDLAIVDPPRRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQP 404 Query: 357 FDMFPHTAHYEVLTLLVK 374 D FP T+H E L LL K Sbjct: 405 HDFFPQTSHVESLVLLSK 422 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 23/190 (12%) Query: 201 VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTG 260 +PL PQ F Q NPAV ++ A + + + D FCG+G F L A+ ++ G Sbjct: 299 LPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVIG 358 Query: 261 IEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPEL---------VLVNPPRR 311 +E+ + A+ +A LGL L+F D +Q D P L +L++PPR Sbjct: 359 LEVVEPMVTRAQANATRLGLDNLEFLKADLSQM-----DSPRLRQLCSQASAILLDPPRD 413 Query: 312 GIGKPLCDYL------STMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHT 363 G K L L ++ + I+Y SCN T+A+D L G+ ++ + + DMFPHT Sbjct: 414 G-AKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVMDMFPHT 472 Query: 364 AHYEVLTLLV 373 +H E + L + Sbjct: 473 SHVESMALFL 482 >UniRef50_Q6KHE2 Uncharacterized RNA methyltransferase MMOB5020 n=1 Tax=Mycoplasma mobile RepID=Y5020_MYCMO Length = 363 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 25/261 (9%) Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R + L Y L + S+ + L L +D L +K W+ +L Sbjct: 121 RNKITLHYGSLYLANSNHKIKLAKSLLTDINLKANKKEAEWIIRKLD------------- 167 Query: 177 MAIMEG--ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +EG +T+IY T+ + N + + SF+Q N VA+ +Y +++ Sbjct: 168 -TQIEGTKQTKIYTTD------KMNGITFRVGLNSFYQVNKEVANLIYNQISEFIN--LN 218 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 +++ DL+ G+G L A +TG+E ++I A + + + F D ++ Sbjct: 219 ENVLDLYSGIGTISLLIAAKAKSVTGVERNLDSIEDANFNKEFNKIKNVNFIHQDVIKYL 278 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIER 353 + V+V+P RRG+ + + + + + P+ IIY SCN T A + + ++IE Sbjct: 279 KQNKTYFDTVIVDPARRGLEEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHEYQIEF 338 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 ++ +DMFP T H E L +L K Sbjct: 339 IKSYDMFPQTYHIESLMVLKK 359 >UniRef50_Q4A6T9 Putative tRNA (Uracil-5-)-methyltransferase n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6T9_MYCS5 Length = 432 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 18/222 (8%) Query: 162 LPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQL 221 P L + +N + +G+T + Q+ +FN + SFFQ N VA L Sbjct: 220 FPSLTNLIINYNNTFFEVYKGKTFV----QRIGVNKFN-----VLNDSFFQVNGPVAKYL 270 Query: 222 YATARDWVRQLPVKHMWDLFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSA--AE 277 + + + ++ K + D +CGVG ++ AT P++ G E AI A ++ + Sbjct: 271 FDDLAELISKVNSKSLIDFYCGVGAITIYLATKFPELDFYGYEKNRFAIKIANENVLINK 330 Query: 278 LGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPL-CDYLSTMAPRFIIYSSCNA 336 L +++F D + + V+ +PPR G+ + L L++ + I Y SCN Sbjct: 331 LNPEKIKFLKFDLDK-KLNDKVFQDSVIFDPPRAGLSQNLKLLVLNSENVKNIFYISCNP 389 Query: 337 QTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +T+ +D++E+ F+I+ ++ +DMFP T H E L L ++ Sbjct: 390 RTLVRDVKEITEKSNFKIKFIKGYDMFPQTHHIETLVWLSRE 431 >UniRef50_A6DJC1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJC1_9BACT Length = 403 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 8/183 (4%) Query: 196 ERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV-KHMWDLFCGVGGFGLHCATP 254 E +ND + SF Q N VA L + + L + D FCG GF L Sbjct: 218 EVYNDREFVMPAGSFSQVNRDVAEALQRMCAEIISSLEACTFVIDAFCG-SGF-LSMGLR 275 Query: 255 DMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ-GDV-PELVLV-NPPRR 311 D+++ G+EI ++ + A +A + GLT ++ A D + + G + PE L+ +PPR Sbjct: 276 DVKVVGLEIDAKGVEAANFNAQDQGLTTHKYVAGDVNKLLRQRLGKLAPETTLILDPPRA 335 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE-LP-GFRIERVQLFDMFPHTAHYEVL 369 G+G +S +P++I+Y SC+ T+ +D++E LP G++ +++ + DMFP T+H+E L Sbjct: 336 GVGPGTIKAISKRSPKWILYVSCDPGTLGRDLKEILPLGYKHKKLAMLDMFPQTSHFESL 395 Query: 370 TLL 372 LL Sbjct: 396 ILL 398 >UniRef50_Q72IZ3 Uncharacterized RNA methyltransferase TT_C0988 n=4 Tax=Thermaceae RepID=Y988_THET2 Length = 406 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 6/187 (3%) Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L ++ L E F + + +SF Q NP A L AR V + +L+ G G F Sbjct: 222 LAGERTLLEAFGPLKATVSVESFSQVNPLAAGALLEEARTLV--FGGRRALELYAGSGLF 279 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVN 307 L + ++ +EI+ EA+ + LG ++F +D+ + A A G +LV+V+ Sbjct: 280 SLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDARK-AEALGAF-DLVVVD 337 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAH 365 PPR G+ + YL PR I+Y SC+ T A+D+ L G+R+ + +D FP T H Sbjct: 338 PPRAGLPPEVRAYLLRARPREILYVSCDPATWARDVGALVQGGYRLAFARPYDFFPFTHH 397 Query: 366 YEVLTLL 372 EVL+LL Sbjct: 398 VEVLSLL 404 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 17/186 (9%) Query: 200 DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLT 259 D+ L +P F Q NP + L A + P + + DLFCG+G F L A + Sbjct: 261 DLRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARAL 320 Query: 260 GIEIASEAIACAKQSAAELGL-TRLQFQALDSTQFATAQGDVP-----ELVLVNPPRRGI 313 G+E + +A A+ +A GL R F A D TQ TA D+P +L++PPR G Sbjct: 321 GVEGDTRLVAQARFNAELNGLAARAHFIAADLTQ--TALADLPGAAGVRKMLIDPPRSGA 378 Query: 314 GKPLCDYLSTMAP--RFIIYSSCNAQTMAKD---IRELPGFRIERVQLFDMFPHTAHYEV 368 + L + P R ++Y SCN T+A+D + + GFR+E + +MFPHTAH E Sbjct: 379 ----IEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHTAHVES 434 Query: 369 LTLLVK 374 + L + Sbjct: 435 VALFTR 440 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 164/393 (41%), Gaps = 44/393 (11%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PV---EEWCAPVSGPEQGFRNKAKMV 62 G C C + Q + K L L+ F PV + AP+ P +R +A++ Sbjct: 87 GHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLA 146 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPF---IARAGLTPYNVARKR 119 + L + R + + + P P+ A + PF +AR + + Sbjct: 147 TYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARL--------KAK 198 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKV-----ITVNIQP 174 L ++ LT Q+D G + A +R + Q L + ++ Sbjct: 199 ASLGHLELT--QADNGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGALTDVMT 256 Query: 175 VHMAIMEGETEIYLTEQQAL-----AERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 + A EG T++ EQ AL A V P +F Q N V ++ A +W+ Sbjct: 257 MAPAEDEGATQV---EQSALTLPEYALSQGQVSCQFTPGNFVQVNAEVNQRMVEQAVNWL 313 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAS-----EAIACAKQSAAELGLTRLQ 284 + + DLFCGVG F L A L G+E+ E + A+++A L L Sbjct: 314 DLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLS 373 Query: 285 FQALD-STQFATAQ--GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 F D S + + G + +L L++P R G + L +L M P+ ++Y SCN ++A+ Sbjct: 374 FYHADLSADLSNEKWLGKIDKL-LLDPARAGAFESL-QWLQKMKPKKVVYVSCNPASLAR 431 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLL 372 D L G++++++ + DMFP T H E + L Sbjct: 432 DSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALF 464 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 11/192 (5%) Query: 192 QALAERFND-VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW---DLFCGVGGF 247 QAL ND + L + P F Q N + Q+ D VR + DLFCG G F Sbjct: 250 QALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNF 309 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELV 304 L A ++ GIE SE + A+++A ++ +F D + + +G V +LV Sbjct: 310 SLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWTGMRKIKGKV-DLV 368 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 L++PPR G + + T A + ++Y SC+ TM +D++ L G+++ + DMFPH Sbjct: 369 LLDPPRSGAAGVMPWVVKTKAKQ-VVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPH 427 Query: 363 TAHYEVLTLLVK 374 TAH E + LL K Sbjct: 428 TAHVEAIALLEK 439 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/335 (25%), Positives = 145/335 (43%), Gaps = 27/335 (8%) Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +RNKA+ + + K LG+ + DL D P V +K I + + Sbjct: 132 NYRNKAQYQIEFNKGKSKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRI 191 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 + R +K I + +S + G + + + K+ L K L +LP + + N Sbjct: 192 ADFRRHTDGIKTIAVRQSNATGEIQVTLITIGK-KIKDL-KLLASHIMKLPNVVSVFQNE 249 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + G I L + + E + P++FFQ NP + LY+ A ++ Sbjct: 250 TQWQNPQVWGNKTIKLFGKSHITEEILGKKFKLSPRAFFQLNPEQTTTLYSEALKYLDLT 309 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 P + + D + GVG G+ + Q+ GIE EA+ A+++ + + + + Sbjct: 310 PDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENC--------RLNHVRNAE 361 Query: 293 FATAQGDV----PEL---------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 + QG+V PEL ++V+PPR G+ K L L + P +Y SCN T+ Sbjct: 362 Y--IQGNVEKLLPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATL 419 Query: 340 AKDIRELP-GFRIERVQLFDMFPHTAHYEVLTLLV 373 AKD+ L + + +Q DM P T +E +T LV Sbjct: 420 AKDLVLLSDAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >UniRef50_C6LFU0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LFU0_9FIRM Length = 533 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 96/171 (56%), Gaps = 3/171 (1%) Query: 205 IRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIA 264 I P SFFQTN A LY AR +V + K ++DL+ G G A ++ G+EI Sbjct: 353 ISPFSFFQTNSLGAEVLYDRARSYVGETKDKTIFDLYSGTGTIAQILAPVARKVVGVEIV 412 Query: 265 SEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIG-KPLCDYLST 323 EA+A AK++AA GL +F A D + + + P++++++PPR GI K L + Sbjct: 413 EEAVAAAKENAAANGLDNCEFLAGDVLKVIDSVEEKPDIIVLDPPRDGIHPKALEKIGAH 472 Query: 324 MAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLL 372 + + +IY SC ++A+D+ EL G++++RV DMFP + H E + L Sbjct: 473 IRAKRMIYISCKPTSLARDLAELQKYGYQVDRVCCVDMFPGSVHVETVCEL 523 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 7/171 (4%) Query: 210 FFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIA 269 F Q N + ++ TA + + P H+ D FCGVG F L A ++ G+E + + Sbjct: 283 FSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVE 342 Query: 270 CAKQSAAELGLTRLQFQALD---STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 A+ +A + G +F+ ++ S D L++PPR G + LC L+ Sbjct: 343 KARHNARDNGFELCEFKTMNLMHSDGIGRHTLDGIHHALLDPPRDGASE-LCQRLAREPE 401 Query: 327 -RFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + ++Y SCN T ++D L GF ++ VQL+D+FPHT H EV+ L V+ Sbjct: 402 LQRVLYISCNPATFSRDAEHLVNGGFTLDTVQLWDLFPHTHHSEVMGLFVR 452 >UniRef50_C8VQ78 tRNA methyltransferase (Eurofung) n=8 Tax=Eurotiomycetidae RepID=C8VQ78_EMENI Length = 575 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 173/410 (42%), Gaps = 68/410 (16%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPV-----SGPEQGFRNK--- 58 G+C CQ M +QL+ K ++ A+F + E + S + G+R K Sbjct: 187 GKCSGCQLQMLSYADQLAHKKRIVEKAYANFSGLIPELIPAIGDTFPSPLQYGYRTKLTP 246 Query: 59 ----AKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTP- 112 K +G + P +G +++ D+ DCPL I RAGL Sbjct: 247 HFPPPKRNDAGEPQVPPIGFTYKNQRRHLDIEDCPLGTD------------IIRAGLKSE 294 Query: 113 -YNVARKRGELK---YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK-- 166 VA + K ILL E+ S + +D A + + ++ P + Sbjct: 295 RKKVAENLQQYKKGATILLRETTS---RTPKSSTDTDPTSATKPTVITYENKNKPHQESG 351 Query: 167 -VITVNIQPVHMAIMEGETEIYLTEQQALA-ERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 VIT++ +P + E + +T+Q A + E +D + +FFQ N ++ S Sbjct: 352 DVITLD-RPNY-----SEEKRCVTDQNATSVEYIDDYLFTNKAGAFFQNNNSILSGFTEY 405 Query: 225 ARDWV-------RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAE 277 R+ P+K++ D + G G F + + G+++A ++I A+++A Sbjct: 406 IREHALTPTSDKSGTPIKYLLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIVSARENARA 465 Query: 278 LGLTRLQFQALDSTQFATAQGDVP-----ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYS 332 L F A D+ A DVP L++++PPR+G + L PR ++Y Sbjct: 466 NNLPNTGFAAADA---AVLFKDVPYPPDQTLLVIDPPRKGCSEDFLRQLLAYGPRRVVYV 522 Query: 333 SCNAQTMAKDI------RELPGFR--IERVQLFDMFPHTAHYEVLTLLVK 374 SCN T A+D+ E G R IE ++ FD FP T H E + +L K Sbjct: 523 SCNVHTQARDVAVMVQGDEKTGVRYNIESIRGFDFFPQTGHVEGVAVLNK 572 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 6/188 (3%) Query: 193 ALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 L ++ + L R F Q N L + A P + + DLFCG G F L A Sbjct: 252 GLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLA 311 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFATAQGDVPELVLVNPP 309 + QL G+E +I A+++A G+ ++F A+D+ T+ A G+ + V+++PP Sbjct: 312 SGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHFDTVILDPP 371 Query: 310 RRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYE 367 R G + ++ +AP I+Y SC+ T+ +D+ L G+R+ DMFP T H E Sbjct: 372 RTG-ARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGVDMFPQTYHIE 430 Query: 368 VLTLLVKQ 375 +TLL++ Sbjct: 431 SVTLLIRS 438 >UniRef50_B0DKW8 Predicted protein (Fragment) n=5 Tax=Agaricomycetes RepID=B0DKW8_LACBS Length = 456 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 28/216 (12%) Query: 185 EIYLTEQQA-LAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV------------RQ 231 I +T+Q+ + E+ D SFFQ N +V L RD + Sbjct: 238 HICVTDQKGTVREKVGDWVFEYNGGSFFQNNNSVLLPLTDYVRDAIFPPATTTTTTTATP 297 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA--ELGLTRLQFQALD 289 H+ D +CG G F + + ++ GIE+++++I A ++A + ++ F+A + Sbjct: 298 ARPTHLVDTYCGSGLFAIVLSPHFDKVAGIELSADSIRYATRNAKLNNIPEEKISFRAGN 357 Query: 290 STQFATAQGDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI--- 343 + + GD P +VL++PPR+G + L + APR I+Y SCN T A+D+ Sbjct: 358 AGEIFATVGDFPADESVVLIDPPRKGCDEFFIQQLLSFAPRTIVYVSCNVHTQARDVGNI 417 Query: 344 -RELPG------FRIERVQLFDMFPHTAHYEVLTLL 372 R G + +E V+ FD+FP TAH E + +L Sbjct: 418 LRATEGNEVGKKYVLESVRGFDLFPQTAHVESVAVL 453 >UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVF8_OPITP Length = 493 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 5/169 (2%) Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 + FFQ NP + + R+ + + D +CG G F L A+ ++ G+EI+ + Sbjct: 320 RDFFQNNPFILPAFTSYVREQAAASGARFLVDAYCGSGLFALASASAFERVAGVEISESS 379 Query: 268 IACAKQSAAELGLTRLQF--QALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMA 325 + A+++AA G+T F + A +V+++PPR+G + L Sbjct: 380 VRFARENAAANGITNASFLAADAAAIFAGLAFPAAESVVVIDPPRKGCDREFLQQLFAFG 439 Query: 326 PRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYE-VLTL 371 PR ++Y SC+ T +D+R+ G+ + VQ FD+FP T H E V+TL Sbjct: 440 PRAVVYVSCDPATQMRDLRDFLAAGYELIAVQPFDLFPQTRHLECVITL 488 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 5/190 (2%) Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L + L +F DV L + SFFQ N A Q+ A + P + + + GVGG Sbjct: 255 LAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIE--PCDTLVEAYSGVGGI 312 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--FATAQGDVPELVL 305 L + GIE EA+ AK++A ++F D+ + + + V+ Sbjct: 313 SLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKIIRRTKIDAVV 372 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQLFDMFPHTA 364 V+PPR G+ + + L P+ I+Y SCN T+ K+++EL + ++ V FDMFP+T Sbjct: 373 VDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVIPFDMFPNTP 432 Query: 365 HYEVLTLLVK 374 H E + LL K Sbjct: 433 HVETVVLLSK 442 >UniRef50_Q1IXG2 (Uracil-5)-methyltransferase n=3 Tax=Deinococcus RepID=Q1IXG2_DEIGD Length = 410 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 15/196 (7%) Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ GE EI E+F V + I F Q NP A Y A + H Sbjct: 226 LIAGEAEIQ--------EQFGQVRVGITATGFAQVNPEAAGLAYIHAAELAGS--GLHAV 275 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DL+ G G G H A ++T ++ A+EA+ +Q+ A G + +++ D+ + Sbjct: 276 DLYGGSGAIGRHLAPHFARVTVLDTAAEALVRGRQAVAVSGERNVSYRSGDAARLGELST 335 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 DV ++V+PPR G+ + D++ ++Y SC+ T A+D+ +L G+R+ V Sbjct: 336 DV---IVVDPPRAGLDEGARDHIHASTADRLVYVSCDPATWARDVGDLTRRGWRLGEVTP 392 Query: 357 FDMFPHTAHYEVLTLL 372 D +P T+H EV+++L Sbjct: 393 HDFYPQTSHVEVVSVL 408 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 145/342 (42%), Gaps = 36/342 (10%) Query: 47 PVSGPEQGFRNKAKMVVSGSVEK--PLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKP 103 P+ GP G+R++A++ +K L+G H D+ DCP+ + A Sbjct: 124 PLRGPHWGYRSRARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAE 183 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 I L R L I + ++ R VL T R A + Sbjct: 184 LIEGLSL--------RERLPQIEAAVGEERTALVFR-VLEDPTAEDFARLA------RFG 228 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLW-----IRPQSFFQTNPAVA 218 + + + V IQ EG + + + +P W P F Q N A+ Sbjct: 229 KDQGLDVYIQ------REGRDSVAPVYPETAHDLSYSLPEWEVTFRFGPLDFTQVNMAIN 282 Query: 219 SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAEL 278 Q+ + P + + DLFCG+G F L A +TG+E +EA+A A ++AA+ Sbjct: 283 RQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADN 342 Query: 279 GLTRLQFQALDSTQ---FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 G+ ++F D ++ + G VL++P R G + L + A R I+Y SCN Sbjct: 343 GIGNVEFHVADLSKPESCGSWAGREYHKVLLDPSRSGALEILQCVPNWKAGR-IVYVSCN 401 Query: 336 AQTMAKDIRELP---GFRIERVQLFDMFPHTAHYEVLTLLVK 374 T+A+D L G+R+ + + DMFPHTAH E + + + Sbjct: 402 PSTLARDAGILVHEYGYRLLKAGVMDMFPHTAHVESIAVFER 443 >UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016949AC Length = 406 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 11/285 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQ--GFRN 57 C ++D +C CQ QL+AK ++ + + P+ G + +RN Sbjct: 126 CPVFD--QCGGCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRN 183 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA++ + + G L+ GT D+ C + V +K ++ + YN Sbjct: 184 KAQLQTEVRDSRVITG-LYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNE 242 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 ++ G L+ I+ ++S G + L + + L + K + +H+++P++ I N+ P Sbjct: 243 KKRSGVLRTIVARVARSTGKVQLTLITATPF-LPKHEKLVSAVHQRMPEVAEIAHNVNPD 301 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ GE ++L+ + L E + + P++FFQ NP+ LY ++ + Sbjct: 302 DTPLVFGERTVHLSGEDRLEETLGPLRFELSPRAFFQLNPSQTVHLYDYVKEAAALTGDE 361 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 + D +CG G GL A ++ GIEI +A+ A+++A GL Sbjct: 362 LVVDAYCGTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGL 406 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 170/393 (43%), Gaps = 31/393 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQGFR 56 C L+ G C CQ P QLS K +++ + D PVE +S + G+R Sbjct: 72 CPLF--GCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEP--CEMSPLQWGYR 127 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIA---RAGL- 110 NKA + V +G +R + E L CP+ V ++ F+ R GL Sbjct: 128 NKAIVPVRSQGRGWGMG-FYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLL 186 Query: 111 TPYNVA-RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVIT 169 +PY R G L+ +++ G +++ V+R D + +L L L L L V+ Sbjct: 187 SPYREGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPR-GRLLSDLEGLFRLLEGLGVVG 245 Query: 170 VNI---QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 +++ + + +G+ + + + E + L SFFQ N A +++ Sbjct: 246 LSVFRNRRDANFVWDGDFA-WGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVV 304 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIE---IASEAIACAKQSAAELGLTRL 283 D + + + + +L+ GVG A ++ +E A E + Q G+T L Sbjct: 305 DLLDETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPL 364 Query: 284 QFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A D GD +VL +PPR G + + A +IY SCN T+A+D+ Sbjct: 365 LGAAEDV--LGDLGGDFQAVVL-DPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDL 421 Query: 344 RELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+ + RV+ FDMFP T H E +TL+ + Sbjct: 422 MLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 15/183 (8%) Query: 200 DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLT 259 DV + P F Q N V + A +W+ P H+ DLF G+G F L A ++T Sbjct: 260 DVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAKVT 319 Query: 260 GIEIASEAIACAKQSAAELGLTRLQ------FQALDSTQFATAQGDVPELVLVNPPRRGI 313 +E+ + QSAA G+T + F+ D T Q + VL++PPR G Sbjct: 320 AVELDEHMVKRGAQSAAANGITNTEHVIGNLFEP-DPTHLWMQQ--TYDRVLLDPPRAG- 375 Query: 314 GKPLCDYLSTMAPRFIIYSSCNAQTMAKD----IRELPGFRIERVQLFDMFPHTAHYEVL 369 + + +++ AP I+Y SC+ ++A+D +RE G+R+ + DMFPHT+H E + Sbjct: 376 AEAMMPHIARFAPERIVYVSCHPGSLARDAHILVRE-HGYRLIAAGVMDMFPHTSHIESM 434 Query: 370 TLL 372 + Sbjct: 435 AVF 437 >UniRef50_Q6C110 YALI0F20196p n=1 Tax=Yarrowia lipolytica RepID=Q6C110_YARLI Length = 566 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 101/203 (49%), Gaps = 26/203 (12%) Query: 188 LTEQQAL-AERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV---RQLPVKHMWDLFCG 243 +T+ +A+ +E ++ FFQ N ++ + A R+ + P + + D +CG Sbjct: 327 VTDNKAIVSEYIDNYRFDFTAGEFFQNNNSILPAVTAYVRENILLDGGKPPRFLVDAYCG 386 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD---- 299 G F + C+ ++ G+EI+ E++ A+++A + +++ F T + + Sbjct: 387 SGLFSITCSQAVEKVYGVEISDESVKFARKNA--------ELNKINNAVFLTGKAENIFK 438 Query: 300 ------VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI----RELPGF 349 ++++PPR+G + + L T P+ ++Y SCN T A+D+ ++ P + Sbjct: 439 DLDCDPAQTCMIIDPPRKGTDEAFINQLVTFQPQRLVYVSCNVHTQARDVAYLLKQCPEY 498 Query: 350 RIERVQLFDMFPHTAHYEVLTLL 372 ++E ++ FD FP T H E + +L Sbjct: 499 KVESIRGFDFFPQTKHVEGVAVL 521 >UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nautilia profundicola AmH RepID=TRMA_NAUPA Length = 365 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 90/391 (23%), Positives = 161/391 (41%), Gaps = 42/391 (10%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M C+ + G+C SC P EQL K+ LK + ++F + E V G ++ FR +A+ Sbjct: 1 MTCSSF--GKCGSCVLWEMPYDEQLKMKSEKLKEMFSEFDMPE-IEVVHGSDEHFRARAE 57 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V +K M R + +C + + + L I + N+ Sbjct: 58 FRVWHEGDKSYYAMRKRKEDGRGVIPIEECKIVDKAIYDIMTPLLKEIEKND----NLRF 113 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K E+ ++ S S G +++ + +K + E + +LK N Sbjct: 114 KLYEIDFL----SNSKGELIITLIYH--------KKVDESIAEDIKKLKEKFKNAD---- 157 Query: 178 AIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 I+ + Y+ ++ L E N I +F Q N + ++ A L Sbjct: 158 FIVRKKGRKYVFDKNYLIEELNINSKTYKYKIIENTFSQPNRQMNQKMIEWAMRNSEDLK 217 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + +L+CG G F + + ++ EI+ E+I A +A + F A+ + +F Sbjct: 218 -GDLVELYCGNGNFTIPLSERFNKVIATEISKESIEAATYNAEINARDNITFLAMSAAEF 276 Query: 294 ATAQGDVPEL--------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 + D L +L++PPR G+ ++++ IIY SCN +T+ +D++ Sbjct: 277 SKLYKDRSPLITKYDLKNILIDPPRAGLDDKSREFVNEFDN--IIYISCNPETLQRDLKT 334 Query: 346 L-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L G I+ FD FP+T H E +L K Sbjct: 335 LAKGREIKAFAFFDQFPYTNHAECGVILKKN 365 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 93/387 (24%), Positives = 156/387 (40%), Gaps = 43/387 (11%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPE-QGFRNKAKMVVS 64 G C C W Q+ KT +LL A E + PE G+R++ ++ V+ Sbjct: 72 GICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSRVQLKVN 131 Query: 65 GSVEKPLLGMLH-RDGTPEDL-CDCPLYPASFAPVFAALKPFIAR----AGLTPYNVARK 118 K LG + D+ C + S +L+ + ++ ++AR Sbjct: 132 YQGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDPGNISQIDIARG 191 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 E +++ + + ++ + E L Q + I+ I + + Sbjct: 192 DDESISVIVNHAGA---------------------SVAEVSEYLLQHREISDLIGSMFIR 230 Query: 179 IMEGETEIYLTEQQALAERFNDVP------LWIRPQSFFQTNPAVASQLYATARDWVRQL 232 T I+ E + N +P L+ +F Q N QL D+ Sbjct: 231 HKNSTTSIFGAEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALT 290 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 + + DL+CG G F + A +TG E +IA A+++A G+T + F DS Sbjct: 291 GKEKVLDLYCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAA 350 Query: 293 FATAQGDVPE---LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-- 347 E +V+++PPR G + + + A R IIY SC+ T+A+D+ L Sbjct: 351 AVKKLAAARETFDVVVLDPPRNGAAEVMHHIQALNADR-IIYVSCDPATLARDLGILKKN 409 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 GF++ +Q DMFP T H E +TLL K Sbjct: 410 GFQVINIQGVDMFPQTYHLESVTLLTK 436 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 32/381 (8%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNKAKMVVSGS 66 +C CQ+ EQ+ AK L+ L A +E+ + G+RN+ +M VS Sbjct: 77 KCGGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAAEPLGYRNRTRMRVS-H 135 Query: 67 VEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 V + +G +R G+ L P P+ + L + + R E++ + Sbjct: 136 VPQFAIGY-YRFGS------HSLLPVEQCPISSPLINRVLQGLWAAGREERIAREVREVQ 188 Query: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITV---------NIQPVHM 177 + D ++L + + L+ + L ++P++ + V Q + Sbjct: 189 FFANHDDSRLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPL 248 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + ++ E+ +L + + +FFQTN + ++ T R K Sbjct: 249 TRAKASPGVFFGER-SLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETV---TRGHSGKLA 304 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 DL+ G G F L A ++ +E + + A K +A L ++ + +F + Sbjct: 305 LDLYSGGGFFSLPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVRSGTEEFLRGE 360 Query: 298 GD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 G P+LV+V+PPR G+G+ + M+ + Y SC+ T+++D++ L GFR+E Sbjct: 361 GRQLRPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFRVEE 420 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 V LFD+FP T H E + LV+ Sbjct: 421 VHLFDLFPQTYHLESVLHLVR 441 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 4/194 (2%) Query: 185 EIYLTEQQALAERFNDVPLWIR--PQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 +I L Q LA R ++ P+ + P F Q + QL A + + DL+C Sbjct: 232 QILLQGQVDLAIRVDEPPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYC 291 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 G+G F L A + G+E + +I+ A ++ LGLT F A F + Sbjct: 292 GMGNFSLPLARRAGAVVGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGRWRRTAD 351 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFP 361 +++++PPR G + + + PR I+Y SC+ QT+ +D+ L + + +Q DMFP Sbjct: 352 VIVLDPPRSGAREAVAGMMRCR-PRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFP 410 Query: 362 HTAHYEVLTLLVKQ 375 T H EVL +L +Q Sbjct: 411 QTCHTEVLAVLDRQ 424 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 89/397 (22%), Positives = 158/397 (39%), Gaps = 38/397 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA-DFPVEE-----------WCAPVS 49 QC + G C C M + EQL K + +L + F + W A + Sbjct: 81 QCQHF--GLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIK 138 Query: 50 GPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIAR 107 +R KA++ V + T + + CP+ + +F LK +A+ Sbjct: 139 SSPWHYRRKARIGVQFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQ 198 Query: 108 AGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKV 167 V G ++ I S + ++ D ++ + + L +++ L Sbjct: 199 -----LTVKSAIGHIEVIQADISDTSSADKIQ----KDNQVVVVVRQLKPMNDTDIGLWQ 249 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQA-----LAERFNDVP-LWIRPQSFFQTNPAVASQL 221 + H+ I +G ++ L + + L+ D ++ F Q N V + + Sbjct: 250 LYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFIQINHQVNNAM 309 Query: 222 YATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 + A W+ L ++ DLFCG+G F L A ++ G+E + A Q++ GL Sbjct: 310 ISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLD 369 Query: 282 RLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 QF D QG V + VL++P R G + + P ++Y SC+ Sbjct: 370 NCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIP-CVLYVSCDPA 428 Query: 338 TMAKD--IRELPGFRIERVQLFDMFPHTAHYEVLTLL 372 T+A+D I G+++E++ L DMF T H E + L Sbjct: 429 TLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILF 465 >UniRef50_B5RUJ7 DEHA2F20042p n=3 Tax=Saccharomycetaceae RepID=B5RUJ7_DEBHA Length = 582 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 23/207 (11%) Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP--VKHMWDLFCGVGG 246 + + + E+ +D FFQ N ++ S + R + + P K++ D +CG G Sbjct: 372 SHKNIITEKIDDFVFQFPASEFFQNNNSILSHVLDYIRFQIHKKPNSFKYIVDTYCGSGF 431 Query: 247 FGLHCAT---PDMQLTGIEIASEAIACAKQSAAELGLT---RLQFQALDSTQFATAQGDV 300 FG+ + D ++ GIE++ +I A +A GL+ R+QF ++ T + + Sbjct: 432 FGISLSKDIPEDGKVFGIEVSRLSIEHAVHNAKLNGLSVPERIQFIEGNANAIFTNKEFI 491 Query: 301 -------PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG----- 348 +V+++P R+G K + L P+ IIY SCN T A+D+ + Sbjct: 492 NSGIIGQDSIVIIDPSRKGSNKKFMEQLLEFKPKLIIYVSCNVFTQARDLADFDDLQSEH 551 Query: 349 ---FRIERVQLFDMFPHTAHYEVLTLL 372 ++I+ + FD FP T H E + +L Sbjct: 552 NCRYKIQDIVGFDFFPQTKHVESIAIL 578 >UniRef50_C5PD16 tRNA-methyltransferase family protein n=2 Tax=Coccidioides RepID=C5PD16_COCP7 Length = 578 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 102/422 (24%), Positives = 175/422 (41%), Gaps = 90/422 (21%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---------VEEWCAPVSGP 51 ++C + +C CQ+ M P +QL K ++ +F +EE S Sbjct: 190 IKCQYF--AKCGGCQFQMLPYEDQLKHKKRIIEKAYINFSGLNSVQVPGIEETMG--SPL 245 Query: 52 EQGFRNK--AKMVVSGSVEK-------PL-LG-MLHRDGTPEDLCDCPLYPASFAPVFAA 100 + G+R K + G V+K PL +G M+ D+ DCPL Sbjct: 246 QYGYRTKLTPHFSLPGRVKKAAHNLTEPLNIGFMMKGRRKVMDIEDCPLGTD-------- 297 Query: 101 LKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE 160 I R GL + E + +L + Q G L ++R +T+ R + E Sbjct: 298 ----IVRVGL--------KNERQRVLDSVHQFKAGATL--LVRENTR----RIPRDKVEE 339 Query: 161 QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIR-PQSFFQTNPAVAS 219 + K + P ++ E + Y+T+Q+ ++ + D L+ +FFQ N ++ S Sbjct: 340 NATEKKGVIRIDHPDYI-----EEKSYITDQKGISSEYIDDYLFRNVAGTFFQNNNSILS 394 Query: 220 QLYATARDWVRQLP-----------VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAI 268 R+ R +P +K++ D +CG G F + +T G+++A+ +I Sbjct: 395 PFTQYVRE--RAVPASADSDPSKPKLKYLLDAYCGSGLFTIALSTVFRSSLGVDVAAGSI 452 Query: 269 ACAKQSAAELGLTRLQFQALDSTQFATAQGDVP-----ELVLVNPPRRGIGKPLCDYLST 323 A+++A L F A D+ + DVP L++++PPR+G L Sbjct: 453 ESARENARLNKLKNTGFAAADAAKLFQ---DVPYPPHQTLLVIDPPRKGCDTNFLKQLLA 509 Query: 324 MAPRFIIYSSCNAQTMAKD----IRELPG---------FRIERVQLFDMFPHTAHYEVLT 370 P ++Y SCN T A+D +R G + IE ++ FD FP T H E + Sbjct: 510 FGPARVVYVSCNVHTQARDVGVMVRGDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVA 569 Query: 371 LL 372 +L Sbjct: 570 VL 571 >UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n=2 Tax=Schizosaccharomyces RepID=YAD7_SCHPO Length = 527 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 104/213 (48%), Gaps = 17/213 (7%) Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV-------- 229 A +G+ + + + E+F D+ +FFQ N ++ + + R+ + Sbjct: 313 ATEDGKHCVITDHKMIVREQFGDLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKE 372 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 Q P K+ D +CG G F + C+ + + G+EI+++++ A+++A ++ F Sbjct: 373 HQRP-KYFVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQ 431 Query: 290 STQFATAQGDVPE--LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 + + ++ P ++++PPR+G + + L +P I+Y SCN T A+D+ L Sbjct: 432 AEKIFSSIETPPNETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLL 491 Query: 347 -----PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 ++I+ ++ FD+FP + H E + L K Sbjct: 492 SQEKGRSYKIDEIRGFDLFPQSHHVESILTLTK 524 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/170 (34%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 206 RPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAS 265 RP F Q NP L A A ++ P + + DLFCG+G F L A Q+ GIE + Sbjct: 255 RPGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIGIEGSP 314 Query: 266 EAIACAKQSAAELGLT-RLQFQALD---STQFATAQGDVPELVLVNPPRRGIGKPLCDYL 321 E A Q+A L R QF + D +T+ A + +L++PPR G + Sbjct: 315 ELTERASQNARLNHLAERAQFHSADLFQTTEHTVAGWGYFDKILLDPPRSGAYALVQALH 374 Query: 322 STMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVL 369 + PR I+Y SCN T A+D L G+R + +MFP TAH E + Sbjct: 375 APYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQTAHVETV 424 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 165/386 (42%), Gaps = 28/386 (7%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA---PVSGPEQGFRNK 58 +C ++ RC CQ Q + K A ++ + +E S +RN+ Sbjct: 78 RCPVF--ARCGGCQVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQ 135 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNV 115 +M V + + M + D+ C L P + V + F+ G T V Sbjct: 136 VQMPVRWNATAQRVEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFV 195 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 ++++ +S + G M + F L +D +++++ H PQ+ + V +QP Sbjct: 196 -------HHVIVRQSHATGDMAVVFALATDDP--SVKRSVGRFH--APQVVQVAVTVQPR 244 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G+ + L E + + P+SF Q +A ++Y V Sbjct: 245 AHGPVWGDGAEVMKGGSHLEENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETD 304 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--- 292 + D +CG+G L A+ + G+E +AIA A+ +A +L R +D + Sbjct: 305 VVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANA-KLNRVRNAEFVVDRVERWL 363 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 F A G+ ++++ +PPR+G+ + + + ++Y SCN T+ +D+R L G Sbjct: 364 PRFVEA-GNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARG 422 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 F + +Q FDMFP T+H E + + + Sbjct: 423 FYVTDIQPFDMFPQTSHVECVVTMRR 448 >UniRef50_C6WAK7 Deoxyribonuclease/rho motif-related TRAM n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WAK7_ACTMD Length = 411 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 196 ERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPD 255 ER D +R F+Q +P A +W P H WDL+ G G F A Sbjct: 225 ERAADRDWLVRADGFWQVHPHAADTFARVVGEWAACEPGDHAWDLYGGAGLFASVLAAQV 284 Query: 256 MQLTGIEI---ASEAIACAKQSAAELGLTRLQFQAL-DSTQFATAQGDVPELVLVNPPRR 311 + +E+ A+ A+ +++ A+L + + DS A P +V+++PPR+ Sbjct: 285 GETGSVEVVESATNAVRDGQRALADLPQVKWHVGRVEDSVTRAPFTDRSPSVVVLDPPRK 344 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVL 369 G G + D ++ P ++Y +C+ +A+D+ L G+R+ +++ FD FP T H E + Sbjct: 345 GAGAAVLDAVAARRPARVVYVACDPAALARDVALLAGHGYRLAQLRAFDAFPMTHHVECV 404 Query: 370 TLLVK 374 L + Sbjct: 405 ALFTR 409 >UniRef50_B6HIY5 Pc21g06420 protein n=11 Tax=Leotiomyceta RepID=B6HIY5_PENCW Length = 537 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 164/418 (39%), Gaps = 84/418 (20%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----------EEWCAPVSGPEQGFRNK 58 G C CQ M +QL+ K ++ A+F E + +P+ + G+R K Sbjct: 139 GECSGCQLQMMSYDDQLAHKRRIVEKAYANFSGLIPELVPTIGETFASPM---QYGYRTK 195 Query: 59 -AKMVVSGSVEK--------------PLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALK 102 G K P +G +++ + D+ DCPL Sbjct: 196 LTPHFAHGGAGKGSKKDGEEPSQPQVPPIGFTYKNRRLDMDIEDCPLGTD---------- 245 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQL-RKALPWLHEQ 161 I R GLT RKR S G +L +R T A++ + A P + Sbjct: 246 --IVRRGLTS---ERKR----VAENIRSYKRGATLL---MREST--ARIPKDAAPTADGE 291 Query: 162 LPQLKVITVNIQPVHMAIMEGETEIYLTEQQALA-------ERFNDVPLWIRPQSFFQTN 214 P + I ++ E E Y+ E++ + E +D + +FFQ N Sbjct: 292 APTVGGIAATPNADTGDVIRIERENYIEEKRCVTDNNATSFEYVDDYIFSNKAGAFFQNN 351 Query: 215 PAVASQLYATARDWV-------RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 ++ S R P+K++ D + G G F + + G++I ++ Sbjct: 352 NSILSGFTEYIRSQAIPAGNDKDAKPIKYLLDAYSGSGLFTITLSPLFKSSLGVDIGGDS 411 Query: 268 IACAKQSAAELGLTRLQFQALDSTQFATAQGDVP-----ELVLVNPPRRGIGKPLCDYLS 322 I A+++A L F A D+ AT DVP L++++PPR+G + + Sbjct: 412 IVSARENARANKLPNTGFAAADA---ATLFKDVPYPPDQTLLVIDPPRKGCSEDFLRQML 468 Query: 323 TMAPRFIIYSSCNAQTMAKDI--------RELPGFRIERVQLFDMFPHTAHYEVLTLL 372 PR ++Y SCN T A+D+ ++ + IE V+ FD FP T H E + +L Sbjct: 469 DFKPRRVVYVSCNVHTQARDVAVMVQGDEKQNVRYEIESVRGFDFFPQTGHVEGVAIL 526 >UniRef50_B3L5E5 Putative uncharacterized protein n=2 Tax=Plasmodium (Plasmodium) RepID=B3L5E5_PLAKH Length = 825 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 22/202 (10%) Query: 190 EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR--QLPVKHMWDLFCGVGGF 247 E+ L RF + P FFQ N LY D++ + +++DL CG G Sbjct: 628 EEIILNNRF-----LLTPSCFFQVNHTSCEILYKKVIDYINISEKKKNYIFDLCCGTGTI 682 Query: 248 GLHCAT----PDMQLTGIEIASEAIACAKQSAAELGLTRLQF-QALDSTQFATAQGDVPE 302 + A D+ + GI+I ++I CA ++A + +F Q FA +V E Sbjct: 683 SICAANELKGKDVHIVGIDICEDSIICANKNAEMNKIKNYKFIQGRVEELFANEIKNVSE 742 Query: 303 -----LVLVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL----PGFRIE 352 +++V+PPR G+ + + LS+ IIY SCN T+ ++ + R++ Sbjct: 743 KNSNVIIIVDPPRSGLANSVLNILSSNQLIGQIIYVSCNPITLISNVTHVLFQNENLRMK 802 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 + DMFPHT H E +T +VK Sbjct: 803 NLVFVDMFPHTFHLECITNIVK 824 >UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVF6_9DELT Length = 511 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 19/212 (8%) Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWI---------RPQSFFQTNPAVASQLYATARDW 228 A++ GE + +++ A + PL++ P SFFQ N A L ATA + Sbjct: 294 ALVAGERRVLCLDRRGEALPDDGAPLYLPLGGRWFGLDPASFFQVNSRAAELLAATAVEM 353 Query: 229 VRQL----PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 + L + + D++CG G GL A ++ G+E A+ A+++A G + Sbjct: 354 LLSLRPDATPRRLLDVYCGAGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCR 413 Query: 285 FQALDSTQFATA--QGDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 ++ D+ + TA + P + L++PPR G+ + L +AP ++Y SCN T+ Sbjct: 414 YEVGDAARLLTALAREHGPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATL 473 Query: 340 AKDIRELPG-FRIERVQLFDMFPHTAHYEVLT 370 A+D R L + + +V D+FPH+ H E ++ Sbjct: 474 ARDARALSADYELMQVTPLDLFPHSPHVESVS 505 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 99/399 (24%), Positives = 165/399 (41%), Gaps = 58/399 (14%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPEQGFRNKA 59 CA + G C C +Q+ K LK+ L F EEW AP+ + +R +A Sbjct: 90 CAHF--GVCGGCSLQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRA 147 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFI----ARAGLTP 112 ++ V ++ L M R+ L D C + + LK + +A + Sbjct: 148 RIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLDQVLSDSLVELKTLLESLTGKAHIGH 207 Query: 113 YNVARKRGELKYIL--LTE-SQSDGGMMLRFVLRSDTKLAQLRKALPWLH----EQLPQL 165 +A E+ ++ L E + SD + +F L +L K + LH E P Sbjct: 208 IELAMGDDEVSLLIRHLDELNVSDVNQLRQFTLLKGWQLYFQSKGIDSLHRVDDEHAPM- 266 Query: 166 KVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 +H ++ E F V P F Q N V +++ A Sbjct: 267 --------RLHYSL----------------EDFK-VKFAFSPLDFTQVNSHVNARMVQLA 301 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGL---HCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 + + + + DLFCG+G F L C ++ G+E + E + A ++A LT+ Sbjct: 302 CELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQ 361 Query: 283 LQFQALDSTQ-FA----TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 F + D T+ F+ QG + +L++PPR G + Y+ + I+Y SCN Sbjct: 362 ASFFSQDLTKDFSHHSWAKQG--FDALLIDPPRSG-AYEVMQYVPNFGAKRIVYVSCNPS 418 Query: 338 TMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 T+A+D L G+++++ + DMF HT H E + L K Sbjct: 419 TLARDAGVLAQYGYQLKKAAVMDMFTHTEHVESIALFEK 457 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 465 e-129 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 461 e-128 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 458 e-127 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 453 e-126 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 451 e-125 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 443 e-123 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 440 e-122 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 440 e-122 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 438 e-121 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 438 e-121 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 438 e-121 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 435 e-121 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 433 e-120 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 430 e-119 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 427 e-118 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 425 e-117 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 424 e-117 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 421 e-116 UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 420 e-116 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 418 e-115 UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Act... 418 e-115 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 418 e-115 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 416 e-115 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 416 e-115 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 416 e-115 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 415 e-114 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 414 e-114 UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82... 414 e-114 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 414 e-114 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 413 e-114 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 413 e-114 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 412 e-114 UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=17... 411 e-113 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 411 e-113 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 410 e-113 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 409 e-112 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 409 e-112 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 408 e-112 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 406 e-112 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 406 e-112 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 405 e-111 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 405 e-111 UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA ... 404 e-111 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 403 e-111 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 403 e-111 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 402 e-111 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 402 e-110 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 402 e-110 UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococ... 401 e-110 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 401 e-110 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 401 e-110 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 401 e-110 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 401 e-110 UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 399 e-110 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 399 e-110 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 398 e-109 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 398 e-109 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 398 e-109 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 398 e-109 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 397 e-109 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 397 e-109 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 396 e-109 UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 ... 396 e-109 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 395 e-108 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 394 e-108 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 393 e-108 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 393 e-108 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 393 e-108 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 392 e-108 UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Corio... 392 e-107 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 391 e-107 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 391 e-107 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 391 e-107 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 391 e-107 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 391 e-107 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 391 e-107 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 391 e-107 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 390 e-107 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 388 e-106 UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax... 386 e-105 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 386 e-105 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 384 e-105 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 384 e-105 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 383 e-105 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 383 e-105 UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 383 e-105 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 382 e-105 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 382 e-104 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 381 e-104 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 380 e-104 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 380 e-104 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 379 e-104 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 379 e-103 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 376 e-103 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 376 e-103 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 376 e-102 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 375 e-102 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 375 e-102 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 374 e-102 UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopo... 374 e-102 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 374 e-102 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 373 e-102 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 373 e-102 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 373 e-102 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 371 e-101 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 371 e-101 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 371 e-101 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 370 e-101 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 370 e-101 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 369 e-101 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 369 e-101 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 369 e-100 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 369 e-100 UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collins... 369 e-100 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 368 e-100 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 367 e-100 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 367 e-100 UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase ... 365 1e-99 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 365 1e-99 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 363 6e-99 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 363 7e-99 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 363 7e-99 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 362 9e-99 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 362 1e-98 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 362 1e-98 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 361 3e-98 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 360 4e-98 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 360 5e-98 UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 360 5e-98 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 359 9e-98 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 359 9e-98 UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-... 359 1e-97 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 358 2e-97 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 358 2e-97 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 357 3e-97 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 357 3e-97 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 357 4e-97 UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Lepto... 356 6e-97 UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 356 9e-97 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 356 1e-96 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 355 2e-96 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 354 2e-96 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 354 4e-96 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 354 4e-96 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 353 7e-96 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 351 2e-95 UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 ... 350 6e-95 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 349 7e-95 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 349 8e-95 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 349 8e-95 UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 349 1e-94 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 349 1e-94 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 346 6e-94 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 346 6e-94 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 346 8e-94 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 345 1e-93 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 344 3e-93 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 343 5e-93 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 340 5e-92 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 340 7e-92 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 336 1e-90 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 334 3e-90 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 334 3e-90 UniRef50_C4GBP4 Putative uncharacterized protein n=1 Tax=Shuttle... 333 5e-90 UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacr... 332 2e-89 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 325 2e-87 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 325 2e-87 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 324 3e-87 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 324 4e-87 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 324 5e-87 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 322 9e-87 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 320 5e-86 UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribac... 320 7e-86 UniRef50_A9NFQ7 RNA methyltransferase, TrmA family, putative n=1... 320 7e-86 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 319 9e-86 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 317 4e-85 UniRef50_C5C7F2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 316 7e-85 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 314 3e-84 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 313 7e-84 UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopob... 312 9e-84 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 312 9e-84 UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Achol... 312 1e-83 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 310 3e-83 UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n... 310 4e-83 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 310 4e-83 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 310 5e-83 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 310 6e-83 UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lenti... 310 6e-83 UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS 308 2e-82 UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgrou... 307 3e-82 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 307 3e-82 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 307 3e-82 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 306 7e-82 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 304 3e-81 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 303 6e-81 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 303 8e-81 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 303 8e-81 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 303 9e-81 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 302 1e-80 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 302 1e-80 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 302 2e-80 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 302 2e-80 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 302 2e-80 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 301 2e-80 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 301 2e-80 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 301 2e-80 UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexa... 301 3e-80 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 300 4e-80 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 300 5e-80 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 300 7e-80 UniRef50_C2BW20 23S rRNA methyluridine methyltransferase n=1 Tax... 299 8e-80 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 299 8e-80 UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8... 299 9e-80 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 299 1e-79 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 299 2e-79 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 299 2e-79 UniRef50_D0P3V9 RNA methyltransferase n=2 Tax=Phytophthora infes... 298 2e-79 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 298 3e-79 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 297 4e-79 UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protei... 296 1e-78 UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phyto... 294 3e-78 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 294 4e-78 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 293 7e-78 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 293 7e-78 UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Camin... 292 1e-77 UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchi... 291 2e-77 UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfo... 291 2e-77 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 291 2e-77 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 291 3e-77 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 290 6e-77 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 289 9e-77 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 289 1e-76 UniRef50_UPI0001792CAF PREDICTED: similar to RNA m5u methyltrans... 289 1e-76 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 289 2e-76 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 289 2e-76 UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio Re... 288 2e-76 UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragm... 288 2e-76 UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichop... 288 2e-76 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 288 3e-76 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 288 3e-76 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 287 3e-76 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 287 4e-76 UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 ... 287 4e-76 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 287 4e-76 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 287 5e-76 UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=... 287 6e-76 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 287 6e-76 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 286 7e-76 UniRef50_A2ELU0 Putative uncharacterized protein n=1 Tax=Trichom... 286 8e-76 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 286 9e-76 Sequences not found previously or not previously below threshold: >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 177/394 (44%), Gaps = 24/394 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-----------CAPVSGP 51 C +YD +C CQ QL+ K + + L + P G Sbjct: 75 CGIYD--KCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGM 132 Query: 52 --EQGFRNKAKMVVSGSVE-KPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIA 106 +RNKA++ V S L+ + G+ D C + V +K Sbjct: 133 NDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGR 192 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 G++ Y+ +G L++++ G +M+ V KL Q + + LP++K Sbjct: 193 ELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNG-RKLPQAELWVERIRAALPEVK 251 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I N+ ++ G+ L + + + + + I +SF+Q NP+ +LY TA Sbjct: 252 SIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQTIELYRTAV 311 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 D+ + + + D +CG+G L A ++ G+EI EAI AK++A G++ F+ Sbjct: 312 DYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFE 371 Query: 287 ALDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A + +G +P++++V+PPR+G L D + M P ++Y SCN T+A+D+ Sbjct: 372 AGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPSTLARDL 431 Query: 344 REL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 R L G++ V DMFP T+H E + +V++ Sbjct: 432 RTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 189/384 (49%), Gaps = 15/384 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRN 57 +C +Y+ +C CQ QL AK +++++ + PV G +RN Sbjct: 78 ECPVYN--QCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA++ + G E L+ +R GT + ++ C + + +K + G++ YN Sbjct: 136 KAQVPI-GEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNE 194 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R +G L++++ Q G +ML F+ R+ +L + + + + P++K I N+ P Sbjct: 195 ERNKGTLRHVMARYGQVTGEIMLVFITRT-AELPNKKAIIEEIATKFPEVKSIVQNVNPK 253 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G+ L + + + D+ I +SF+Q NP LY ++ + + Sbjct: 254 RTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNE 313 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + D +CG+G L A ++ G+EI EAI AK++AA +T +F ++ Sbjct: 314 TVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIP 373 Query: 296 ---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 +G + + ++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ L G++ Sbjct: 374 KWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEGGYK 433 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + VQ DMFPHT H E + L+ + Sbjct: 434 TQEVQPVDMFPHTTHVECVVLMSR 457 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 175/382 (45%), Gaps = 16/382 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNK 58 C ++ C CQ QL K + N++ + P+ G E+ +RNK Sbjct: 78 CHVH----CGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNK 133 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + ++G + + C + + V + + + G+ Y+ Sbjct: 134 VQIPVGEKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEK 193 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RG+L++I++ +M+ FV ++ K + + + L EQ PQ+K I N+ Sbjct: 194 SHRGQLRHIMVRVGHYTKDIMIVFVTKTS-KFPEKDRIIKELTEQFPQVKSIVQNVNDQR 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ L + + ++ D+ I P+SFFQ NP LY A ++ Sbjct: 253 TNVVLGKKTKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDV 312 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CG+G L A ++ GIE+ EAI AK +A G+ ++F + + Sbjct: 313 VIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPK 372 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 QG P++++V+PPR+G + + M P+ I+Y SCN T+A+D+R L GF Sbjct: 373 WKEQGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILEDGGFET 432 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 ++VQ DMFP T H E + L Sbjct: 433 KQVQPVDMFPSTNHVECVAELT 454 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 172/383 (44%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRNK 58 C Y RC C L KT ++ + E G EQ +RNK Sbjct: 74 CPSYK--RCGGCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ + + G + D C + + V A +K +I + ++ Y+ Sbjct: 132 AQYPIGRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEIT 191 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G +++I+ G +M+ V+ + +K + L +++P++K + +N+ Sbjct: 192 GEGLVRHIMTRVGFKTGEVMVVLVINGRN-IPSQKKLVDRLVKEIPEIKSVVLNVNTKRT 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ I + + + + + I P SFFQ NP LY A D+ + + + Sbjct: 251 NVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-- 295 +DL+CG+G L + ++ G+E+ A+ A ++A G+ +F ++ + Sbjct: 311 FDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEM 370 Query: 296 -AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +G ++V+V+PPR+G + + L M P I+Y SCN T+A+D++ L GF + Sbjct: 371 YEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGGFEVR 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFP T H E + L+ K+ Sbjct: 431 EVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 12/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGP--EQGFRNKA 59 C A +C CQ EQL K + + L + G +RNKA Sbjct: 77 CEH--AAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKA 134 Query: 60 KMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V G R DL C + + V ++ + + + Y Sbjct: 135 QVPVGLENGTVRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREH 194 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +G +++IL S + +++ V +L + ++ + L + +P L I NI Sbjct: 195 KGLVRHILARTSFTTEEVLVAIVTNG-RQLPKKQEVVQQLKDSIPNLCGIVQNINTRKGN 253 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G E+ L + L E+ ++ + +SFFQ NP LY A ++ + ++ Sbjct: 254 TILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVF 313 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--- 295 DL+CG+G L A ++ G+E A+ A+++A + +F + Sbjct: 314 DLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLF 373 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 QG ++V+V+PPR+G + L ++ M P+ I+Y SCN T+A+D++ L G+ Sbjct: 374 KQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQNGYNPIE 433 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 Q DMFPHT+H E + LL ++ Sbjct: 434 AQPVDMFPHTSHVETVVLLERK 455 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 14/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE--QGFRNK 58 C +Y +C CQ P QL+ K + + + + G E +RNK Sbjct: 78 CPVY--AQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNK 135 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ + L + GT D+ DC + + + ++ ++ + + Sbjct: 136 MQVPAAQGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEED 195 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +RG +++I+ G +M V + ++ L+ L +++P + N+ H Sbjct: 196 ARRGIVRHIMGRVGVQTGEVMAVLVTN-EPQVPHLKDLTALLRQEIPGFTTLVQNLNTRH 254 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + + +R I P SFFQ N A +LY TA + + Sbjct: 255 TNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEK 314 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 + D +CG G L A + GIEI AI A+Q+A + ++ + F D+ + Sbjct: 315 VIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAKEMPE 374 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 QG P++V+++PPR G + + + ++ + P+ ++Y SCN ++A+D L GF + Sbjct: 375 LVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRDKGFVV 434 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 +VQ DMFPHT+H E + LL Sbjct: 435 RKVQPVDMFPHTSHVETVCLLT 456 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 22/393 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRN 57 +C + A +C CQ EQL K + N L E P+ G E +RN Sbjct: 76 RCEI--ASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRN 133 Query: 58 KAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA+ V + ++ + R + D C + S P+ A ++ F+ + ++ Y+ Sbjct: 134 KAQFPVGKRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDE 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE--QLPQ---LKVITV 170 +G +++ILL + +M+ V+ +L K + + LP+ + I + Sbjct: 194 ESHQGLVRHILLRVGFTTKELMICVVING-KELPASDKLIKQILACPNLPKDFRVTSICL 252 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 N ++ GE I L + + D+ I P SF+Q NP +LY A D+ Sbjct: 253 NKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTD 312 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + +WDL+CG+G L A + G+EI +AI AK +A + +F + Sbjct: 313 LTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAA 372 Query: 291 TQFATAQ------GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + Q ++++V+PPR+G + L + + M P+ I+Y SC+ T+A+D++ Sbjct: 373 EEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLK 432 Query: 345 EL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L G+ +++V+ D FPH+ H E +TLL ++ Sbjct: 433 YLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 168/383 (43%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRNK 58 C Y +C CQ QL K + NL E G +RNK Sbjct: 74 CIYY--AKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 +++ V S ++ +R + + D+ C + V +K ++ ++ YN Sbjct: 132 SQIPVGQSNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEK 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 K G ++++++ MM+ FV T Q + L ++ P + I NI H Sbjct: 192 TKTGLIRHLVVRTGYHTDEMMVIFVTNGAT-FKQSELLVNKLKKEFPNITSIKQNINNSH 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + L + + ++ ++V I SF+Q N + +LY A ++ + + Sbjct: 251 SNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEI 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CG+G GL+ A + G+E+ +AI A+ +A + L F+ + Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILT 370 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 +QG P++V+V+PPR+G + L + P+ I+Y SCN T +D + L + + Sbjct: 371 WKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAEQYELV 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 + DMFP T H E + L V++ Sbjct: 431 EITPVDMFPQTTHIETVALFVRK 453 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 187/383 (48%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPE--QGFRN 57 C +Y+ C CQ EQL+ K + + +EE P G E +RN Sbjct: 80 CPVYE--ECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRN 137 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K+++ V EK + G+ ++ D+ C + + ++ + + ++ YN Sbjct: 138 KSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEK 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +++G ++ I+ + G + + + + +L + + + +Q+P +K I N+ Sbjct: 198 KQKGLVRTIVTRTAVQTGEVQVTLITTKE-ELPNKEQFIAEVQKQMPAVKSIMQNVNWRK 256 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +++ G+ L ++ + E D+ + ++FFQ NP LY A+ + Sbjct: 257 TSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEK 316 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CGVG GL A ++ G+++ EAIA A+++A G T +++A + Q+ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352 +G P++++V+PPR G L + + + P+ ++Y SCN ++A+D++ L + +E Sbjct: 377 WVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVE 436 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFPHTAH E + LV++ Sbjct: 437 YVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 171/379 (45%), Gaps = 13/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP-VSGPE--QGFRNKA 59 CA+Y +C C QL K ++ + P G E +RNK+ Sbjct: 76 CAVYS--KCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKS 133 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V K G + D+ C ++ + +A+ G PY+ Sbjct: 134 QVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTG 193 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +G++++I+ + + G +M+ V + ++ + + L EQL +L I NI P Sbjct: 194 KGDIRHIMTRFAHTTGQLMIVLVTTKE-RMPFKEEIVRELVEQL-ELTSIVQNINPHKTN 251 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ L + + + + + I +SF+Q NP LY A D + + Sbjct: 252 VIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVI 311 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 D +CG+G L A + G+EI +AI A+ +A L F+ + + A Sbjct: 312 DAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWY 371 Query: 298 --GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 G V ++++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ L G+ ++ Sbjct: 372 KAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKK 431 Query: 354 VQLFDMFPHTAHYEVLTLL 372 VQ DMFP T H E +T+L Sbjct: 432 VQPVDMFPMTTHIEAVTVL 450 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 17/384 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRN 57 C LY G C CQ QLS KT +K+++ + P GP +RN Sbjct: 75 HCDLY--GFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRN 132 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K +M V G+ +G + G+ + + +CP+ + A + PY+ Sbjct: 133 KMQMPVGGTKGDIQMG-FYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDE 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 +G L++++ QS G M+ V ++ L K + L E++PQ++ I N+ Sbjct: 192 HTGKGVLRHVIGRIGQS--GWMIILVTATE-HLPHQEKWVEKLTERVPQVETIVHNVNGK 248 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G L + + D+ + P SFFQ NP + LY A + + Sbjct: 249 RTNVILGPKNSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE 308 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---Q 292 + D +CG G L A + GIEI AI A+++A G +F D+ Sbjct: 309 IVIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIP 368 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 G P++++ +P R G + + ++M P+ I+Y SCN TMA+DI L G+ Sbjct: 369 KLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGYE 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 ++ VQ DMFP TAH E + LL + Sbjct: 429 LKEVQPVDMFPMTAHVEAVALLTR 452 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 435 bits (1120), Expect = e-121, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 178/382 (46%), Gaps = 15/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE--QGFRNKA 59 +C + +C C ++ P EQL K + LL+DF P+ G E +RNK Sbjct: 177 ECPH--SKKCGGCHYLDLPYEEQLKIKQKQVSKLLSDFCK---VHPILGMEHPYHYRNKV 231 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V + ++ ++++GT + + C + + ++ + + Y+ Sbjct: 232 QAVFGRDAKGNIISGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDS 291 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+Y+L+ + G +M+ V+ S L + + L + P++ I +NI Sbjct: 292 GYGLLRYVLVKRGFTSGEIMVVLVIASPI-LPSKKNFVAALRKAHPEITTIVLNINNRTD 350 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G+ E L + + + I +SF+Q NP +LY A + + Sbjct: 351 SLILGDRETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERV 410 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA- 296 D +CG+G GL + ++ G+E+ EAI A +A G+T F D+T+F A Sbjct: 411 IDAYCGIGTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAM 470 Query: 297 --QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 +G+ ++V+++PPR G + D + ++ P ++Y SCN T+ +D++ G++++ Sbjct: 471 AEKGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVK 530 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 DMFP T H E + LL K Sbjct: 531 EAWPVDMFPWTGHVETVCLLYK 552 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 183/383 (47%), Gaps = 14/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRNK 58 C + +C C + +L AK +++ + + PV G +RNK Sbjct: 74 CPCFS--QCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A++ + + + + + DCPL P FA A++K ++ + Y+ Sbjct: 132 AQLPIGADRDGRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEE 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G L+++ L E+ + G +M+ V D +L + + L E LP L+ + N Sbjct: 192 SHSGLLRHLYLREASATGALMVCLVGNGD-ELPHSGELVKRLREDLPCLESVVFNSNREK 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ L + + + + ++ P SF+Q N A LY A ++ Sbjct: 251 TNVILGKRCQALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDT 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD---STQF 293 + DL+CG G G+ A+ ++ G+E+ EAI AK +A G+ ++F D + Q Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQM 370 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +G+ P +V+V+PPR+G G P+ +++ +APR IIY SC+ T+A+D++ L G+ + Sbjct: 371 LRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVKAGYCL 430 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + D+FP TAH E + LL K Sbjct: 431 QTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 102/407 (25%), Positives = 184/407 (45%), Gaps = 36/407 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP----VEEWCAPVSGPE--QGFR 56 C + + +C CQ EQL K + N L E P+ G E +R Sbjct: 71 CPV--SRQCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYR 128 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NKA+ + + ++ + T + + DC L + +K F+ GL PY+ Sbjct: 129 NKAQFPFGRNKDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYD 188 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW----------------- 157 +G ++++L+ + G +M+ V+ T +L L Sbjct: 189 ENAHKGLVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGC 248 Query: 158 LHEQLPQLKV---ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 L E+L Q+K I+ ++ ++ G+ + L + + DV I P SF+Q N Sbjct: 249 LVEKLCQVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVN 308 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 P +LY TA ++ + +WDL+CG+G L A ++ G+EI +AI A+++ Sbjct: 309 PVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRN 368 Query: 275 AAELGLTRLQFQALDSTQFATAQGDVP----ELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 AA G+ ++F + + Q + ++++V+PPR+G D + M P ++ Sbjct: 369 AALNGMDNVEFFVGKAEEVLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTILKMRPEKVV 428 Query: 331 YSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SC++ T+A+D+R L G+ + +V+ DMFP T H E + L ++ Sbjct: 429 YVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 10/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNKAKMVV 63 A +C CQW EQL+AK + + LA PV E+ G+RNKA + Sbjct: 109 ADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPL 168 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S K + ++ G+ +L CP+ P+ AA+K I Y+ +G Sbjct: 169 GLSPTKDVKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGH 228 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 +K++ L + G +++ V RS TKL + + E+ P++ + VN+ + Sbjct: 229 IKHLALRIGRRTGQILVTLVSRS-TKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIF 287 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + L E+F ++ I+P +FFQ N A +L + + + + D + Sbjct: 288 GPETFLIAGSSYLEEKFANLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAY 347 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CGVG F L A Q G+E ++E++ A+++AA G+ + F+ D P Sbjct: 348 CGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAALLPDLDVKP 407 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GFRIERVQLFD 358 +++L++PPR+G + + + + P+ I+Y SCN T+A+D+R L G+R+ RVQ D Sbjct: 408 DILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGYRVTRVQPAD 467 Query: 359 MFPHTAHYEVLTLLV 373 FP TAH E L Sbjct: 468 FFPQTAHVECAVFLE 482 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 12/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPEQ--GFRNK 58 +C AG+C C QL K + + L+ + G + +R+K Sbjct: 73 KCIY--AGKCGGCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDK 130 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ V G + + C + ++ + ++ ++ Sbjct: 131 AEYPVGIEDGNIKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKS 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+YI+ S +M+ V+ + + + L + + +LK + +NI Sbjct: 191 GNGLLRYIITKVGFSTKEVMVILVING-IDIPYKDELINTLKKNIKELKSVVLNINKSRS 249 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G I + + + D I P SFFQ NP LY A ++ + + Sbjct: 250 RLVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIV 309 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-- 295 D++CG+G + A + GIE+ S+A+ AK++AA G+ F A + Sbjct: 310 IDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRL 369 Query: 296 -AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +G +P++++++PPRRG+ K + D M P+ IIY SCN T+A+D+R G++ E Sbjct: 370 YKEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNGYKTE 429 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 +VQ DMFP+T H E + L+ + Sbjct: 430 KVQPVDMFPYTYHVECVVLMSR 451 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 165/383 (43%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGPEQG--FRN 57 +C ++ G C C QL K +K+ L E V G + +RN Sbjct: 71 ECEVF--GLCGGCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRN 128 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA+ + E ++ ++ GT + + C + + + LT Y+ Sbjct: 129 KAQFPLGSDNEGRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDE 188 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 G L+++++ +L FV R D K +L++ L ++P+LK + NI P Sbjct: 189 KTHTGLLRHLVVRVGICTNQALLIFVTR-DKKFKELQEIARKLMTEIPELKGVLQNINPR 247 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G+ + + + + I P SFFQ N +LY T R + + Sbjct: 248 RTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQE 307 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---- 291 + D +CG G G++ A + GIE+ AI A+++AA G+ F Sbjct: 308 TVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLP 367 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FR 350 + + P++++ +PPR+G+ K + + P I+Y SCN T+A+D++E+ + Sbjct: 368 ELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIKACYD 427 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 I VQ D+FP T H E + L Sbjct: 428 INEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP----VEEWCAPVSGPE--QGFR 56 C +Y C CQ QL K ++ + + G E +R Sbjct: 87 CPIYK--ECGGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYR 144 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NK++M V K + G+ + DL DC + V +K A + PYN Sbjct: 145 NKSQMQVGHHQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNE 204 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 ++ G L+ I+ G + V + ++ + + ++LP + I NI P Sbjct: 205 RKRTGVLRTIVTRVGFETGEYQVVLVTAK-KDIPKVDLFIEAIKQRLPDVTSIVQNINPK 263 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 +++ G+ I L ++ + E ++ + P++FFQ NP +LY A++ + + Sbjct: 264 KTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKE 323 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA- 294 + D +CGVG GL A ++ G+++ E+I AK +A G+ + + + Sbjct: 324 KVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLP 383 Query: 295 --TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 +G P++V+V+PPR G+ + L + P+ I+Y SCN T+AK++ L G++ Sbjct: 384 EWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKGGYK 443 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q DMFP TA E + + Sbjct: 444 LKALQPVDMFPQTAQVECVARIE 466 >UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C7R2N2_JONDD Length = 382 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 183/379 (48%), Positives = 247/379 (65%), Gaps = 6/379 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC +DA RCRSC + P QL+ K AD+ LL ++P +W PV+ + GFRNKAK Sbjct: 1 MQCHHFDAHRCRSCALLDIPYERQLATKAADVHALLGEYPDLDWLPPVASAQAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 M VSG+ + P+LG+L DL DCPLY V A++ FI A + PY VA +RG Sbjct: 61 MAVSGTADNPILGILDASFGGVDLRDCPLYTQGMQEVLDAVRAFIMAARIEPYRVADRRG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELKY+L+TES D M+RFV RS + ++ K LP + PQ++V+TVN+QP H AI+ Sbjct: 121 ELKYVLVTESP-DSEYMVRFVARSQEPVTRISKHLPGWLAENPQVRVVTVNLQPEHKAIL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG+ EI LT+ +L R D+PL++RPQSFFQTN VA+ LY A W+ +H+WDL Sbjct: 180 EGDREIVLTKDNSLTMRVGDIPLYLRPQSFFQTNTPVAAHLYRQAEQWIADARPQHVWDL 239 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300 FCGVGGF LH A ++TG+EI++EAI A+ SAAE LT + F ALD+T F+T Sbjct: 240 FCGVGGFALHAAPHANRVTGVEISAEAIESARTSAAERALTNVTFDALDATTFSTGHSAR 299 Query: 301 -----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQ 355 P+LV+VNPPRRGIG L ++L+ ++YSSCNA+++AKD+ +P F+ R + Sbjct: 300 LADGGPDLVVVNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQPTRAR 359 Query: 356 LFDMFPHTAHYEVLTLLVK 374 LFDMFPHT H E + L+ K Sbjct: 360 LFDMFPHTNHVETVVLMSK 378 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 165/372 (44%), Gaps = 12/372 (3%) Query: 15 QWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGP--EQGFRNKAKMVVSGSVEK 69 P QL AK A +K L FP P G +RNKA++ V + Sbjct: 128 TLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQ 187 Query: 70 PLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 G ++ + + + + + + + G + Y+ ++G++++I++ Sbjct: 188 LETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVK 247 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 G +ML V+ L K + L + +P L + +N ++ G T L Sbjct: 248 RGHYSGQVMLILVVNGKG-LPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLL 306 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 Q ++ + I P SF+Q N A LY A + + + D +CG+G Sbjct: 307 WGQPVYQDQMLGLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIGTIS 366 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVL 305 L A Q+ +EI EAI A+ +A GL+ + FQA + + A+G ++ + Sbjct: 367 LALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQAEGIHFDVAV 426 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHT 363 V+PPR+G+ L +AP I+Y SCN T A+D + L G+ ++ VQ D+FP T Sbjct: 427 VDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAGYELQWVQPVDLFPKT 486 Query: 364 AHYEVLTLLVKQ 375 AH EV+ LL ++ Sbjct: 487 AHIEVVGLLERK 498 >UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Actinomycetales RepID=C1RQ79_9CELL Length = 374 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 181/374 (48%), Positives = 245/374 (65%), Gaps = 1/374 (0%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+C +DAG CRSC + QP PEQL+A+ ++ +L D P W V+ GFRNKAK Sbjct: 1 MRCGYFDAGVCRSCTLLAQPYPEQLAAQERHVRAVLGDPPGVTWLPTVTSAAAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 MVV+G+VE P LG+L G DL CPLYP + + F+ L F+ RA LTPY+V + G Sbjct: 61 MVVAGTVEAPTLGILDGHGHGVDLQGCPLYPPAVSAAFSPLADFVTRARLTPYDVPTRTG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++L+T DG +M+RFVLRS LA++RK LP L LP L V +VN+QP H A++ Sbjct: 121 ELKHVLVT-GSPDGELMVRFVLRSTEALARIRKHLPRLQTDLPHLVVASVNVQPAHAAVL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EGE EI LT ++ L N + L +RP+SFFQTN VA+ LY A W + V WDL Sbjct: 180 EGEREIPLTARETLRMHVNGLDLHLRPRSFFQTNTEVAAALYRQALAWADEAAVTSAWDL 239 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300 +CGVGGF LH A Q+ G+E ++EA+ A+ +A + GL +F A D+T FA DV Sbjct: 240 YCGVGGFALHLARAGRQVVGVEASAEAVVSAELTARDAGLPGTRFVAGDATAFALDATDV 299 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+LV+VNPPRRG+G+PL +L ++YSSC+A ++A+D+ +P R+ R Q+ DMF Sbjct: 300 PDLVVVNPPRRGLGEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSLRLVRAQVLDMF 359 Query: 361 PHTAHYEVLTLLVK 374 PHTAH+EVLTLL + Sbjct: 360 PHTAHHEVLTLLER 373 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 169/384 (44%), Gaps = 15/384 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRN 57 C Y C CQ EQL+ K + +++ L + P G +RN Sbjct: 74 NCESYQ--VCGGCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRN 131 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL----CDCPLYPASFAPVFAALKPFIARAGLTPY 113 K + V + + LG C L V A L+ I LTPY Sbjct: 132 KIHLQVKEAKGRIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPY 191 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + KRG L+++++ + G M+ V + A+ L + P++ + NI Sbjct: 192 HWGEKRGLLRHVMIRQGFHSGQCMVVLVTSPEEWQAE-NAFSRALVARQPKIVSVIRNIN 250 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 I+ GE + ++ + + N + I SF+Q N +LY A+++ + Sbjct: 251 RNPGRIVLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQG 310 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + D +CG+G L+ A +++ G+EI A+A AK++A G+T +F + Sbjct: 311 HERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKL 370 Query: 294 AT--AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 A+ P++V+++PPR+G K + +S I+Y SC+ T+A+D+ L G+ Sbjct: 371 LPRMAKDLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDLGVLDKLGY 430 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 + +VQ DMFP T H E + L+ Sbjct: 431 QTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 172/383 (44%), Gaps = 21/383 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNK 58 +C + A +C CQ + Q K + + + PV E +RNK Sbjct: 80 RCPV--ARQCGGCQLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNK 137 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + + ++ +R + D +C L+ + +L+ +I AG Sbjct: 138 VQVPVGVNRDGKVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPA---- 193 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +L+++L+ + G +M+ + +S+ L + + L PQ++ I +N+ Sbjct: 194 ----QLRHLLIKHAFKTGQVMVVLIAKSEN-LKGKDELIERLTAAYPQIRSIILNVNGRE 248 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ EI L ++ E + I +SF+Q NP LY A + + Sbjct: 249 DNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEET 308 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQF 293 + D++CG G GL A ++ GIEI A+ AK++A G+ +F D+ T Sbjct: 309 VIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQ 368 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 + P++ +V+PPR+G+ D L M P I+Y SC+ T+A+D L G+ + Sbjct: 369 LLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGV 428 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 E VQ DMFP T H E + L+ K Sbjct: 429 EVVQPVDMFPQTTHVETVVLMSK 451 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 164/381 (43%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C + C CQ + +QL+ K + LL P+ G +RNK Sbjct: 176 CPV--LNLCGGCQLLDMEYAKQLAFKQKQAEELLKGLCP---VKPIIGMKDPFHYRNKVH 230 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 V + ++ ++ + T + C + + ++ + + Y+ Sbjct: 231 AVFDRDKKGNIISGIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTG 290 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + S G +M+ V S + L E+ P++ I NI + Sbjct: 291 FGLLRHVLIRKGFSTGEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIVQNINGRGTS 349 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ E L + + + I +SF+Q NP LY A + + Sbjct: 350 MVLGDKEHVLYGKGYIVDELCGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVV 409 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---AT 295 D +CG+G G+ + ++ G+E+ +A+ A +A G+ ++F D+ +F Sbjct: 410 DAYCGIGTIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMA 469 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 QG+ ++V+++PPR G + D + + ++Y SCN +T+A+D+R + G+R Sbjct: 470 EQGEKADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYRAAE 529 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 L DMFP T H E + LL K Sbjct: 530 AWLVDMFPGTVHTESIVLLQK 550 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 416 bits (1069), Expect = e-115, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 175/383 (45%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD---FPVEEW-CAPVSGP--EQGFR 56 C +Y+ +C CQ +QL K + L F VE G +R Sbjct: 82 CPVYE--QCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYR 139 Query: 57 NKAKMVVSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK++ + S ++ L+ + DC + + ++ + ++ YN Sbjct: 140 NKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYN 199 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 +++G+++ I+ G + + V +T L + + + ++LP++K I N+ Sbjct: 200 ERKRKGDVRTIVTRVGFETGEVQVVLVTAKET-LPHKEEIVKAIQKRLPEVKSIIQNVNG 258 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +++ GE L + + E DV + ++FFQ NP +LY + + Sbjct: 259 AKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGK 318 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D +CGVG G+ A ++ G+++ E+I AK++A + G+ + + + Sbjct: 319 EKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWL 378 Query: 295 ---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 T +G P++V+V+PPR G D + + P+ +Y SCN T+AKD++ L +R Sbjct: 379 PKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSKDYR 438 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q DMFP TAH E + LV Sbjct: 439 VDYIQPVDMFPQTAHVEAVARLV 461 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 168/380 (44%), Gaps = 15/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAK 60 C A +C C + EQL K A +K LL F + P+ G + +R+K Sbjct: 41 CPY--AKKCGGCDYQGVEYKEQLKTKQAYMKKLLKPFC---FVEPIVGMKNPLYYRHKVH 95 Query: 61 MVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + ++ +R T D+ C + + +K + + Y+ Sbjct: 96 AAFDCTRRGQIVAGAYRKNTHDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTG 155 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + + G +M+ VL S L + L ++ P + + +N+ + Sbjct: 156 YGLLRHVLVRKGYATGQIMVVLVLASPI-LPSKNNFVKALRKKHPNITTVVLNVNDKKTS 214 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ I L + + ++ I P SF+Q NP LY A + + Sbjct: 215 MVLGDRNITLYGKGFIEDKLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERII 274 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA-- 296 D +CG G G+ A ++ G+E+ +AI A +A + ++F D+ +F Sbjct: 275 DAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMA 334 Query: 297 -QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 +G+ ++V+++PPR G + + ++P ++Y SC +T+A+D++ L G+ ++R Sbjct: 335 QKGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKR 394 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 +D FP T+H E + L Sbjct: 395 ATPYDCFPFTSHIETVCCLT 414 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 168/383 (43%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF----PVEEWCAPVSGPE--QGFR 56 C +Y+A C CQ QL K + + P + P G E +R Sbjct: 76 CPVYEA--CGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYR 133 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK++ + L + + DC + V ++ + + G+ Y+ Sbjct: 134 NKSQFQTRMVGSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYD 193 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 G ++ I++ G L F+ S KL + R+ L + LP++ I N+ Sbjct: 194 EKAGSGIVRTIVVRTGVKTGETQLVFITNS-KKLPKKREMLAEIEAALPEVTSIMQNVNQ 252 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +++ G+ L ++++ E+ ++ + ++FFQ NP +LY + Sbjct: 253 AKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGS 312 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D +CGVG G A ++ G++I E+I AK++A + G+ + ++ + Sbjct: 313 ETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVL 372 Query: 295 TA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 +G P+ V+V+PPR G + L L + + ++Y SCN T+A+D+ L +R Sbjct: 373 PKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYR 432 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 I +Q DMFP TAH E + LL Sbjct: 433 IRYMQPVDMFPQTAHVETVVLLQ 455 >UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82 Tax=Gammaproteobacteria RepID=RUMB_HAEI8 Length = 392 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 214/388 (55%), Positives = 276/388 (71%), Gaps = 13/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQGFRNK 58 + C Y CRSCQW+ P +QL+ K LK L ++ W AP EQ FRNK Sbjct: 2 IDCRYYQQNECRSCQWLEIPYSQQLAEKQHHLKQQLISINCDKAQWLAPFQSNEQCFRNK 61 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 AKM+VSGSVE+P+LG+L P DLCDCPLYPA F+ +F+ LK FI RAGL PYN+ Sbjct: 62 AKMLVSGSVERPILGILKNPNDPQSAIDLCDCPLYPARFSIIFSILKDFIGRAGLVPYNI 121 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 A+++GELKYILLTES + G +MLRFVLR++ KL +R+ LP L E+LP L+V++VN+QP+ Sbjct: 122 AKQKGELKYILLTESIATGKLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVVSVNLQPL 181 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 H AI+EGE EI+LTEQQ L E FN +PL+IRPQ FFQTNP VA LYATA+ WV +LP+ Sbjct: 182 HAAILEGEQEIFLTEQQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWVSELPIY 241 Query: 236 HMWDLFCGVGGFGLHCAT-------PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 ++WDLFCGVGGFGLHCA ++LTGIEI+S AI A SA LGL + FQ+L Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSL 301 Query: 289 DSTQFATAQG-DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 D+ + + P+LV+VNPPRRGIGK L ++L+ + P FI+YSSCNA TM KD++ L Sbjct: 302 DAASVIENKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT 361 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ ++QLFDMFP T+HYEVL LL ++ Sbjct: 362 CYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 96/412 (23%), Positives = 181/412 (43%), Gaps = 44/412 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--------------- 46 +C + A +C CQ M QL K + N L E Sbjct: 89 RCPV--ARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGT 146 Query: 47 ---------------PVSGPE--QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLC--DC 87 P+ G E +RNKA+ S + ++ + T + DC Sbjct: 147 GERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDC 206 Query: 88 PLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTK 147 L + ++ F+ G+ PY+ RG +++ L+ + + G +M+ V+ K Sbjct: 207 LLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVVNG-RK 265 Query: 148 LAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRP 207 L + + L Q+ + I++ + ++ G+ + L + + DV I P Sbjct: 266 LPKDEVLVERLR-QVDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISP 324 Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 SF+Q NPA +LY TA ++ + +WDL+CG+G L A ++ G+EI +A Sbjct: 325 LSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384 Query: 268 IACAKQSAAELGLTRLQFQALDSTQFATAQGDVP----ELVLVNPPRRGIGKPLCDYLST 323 I A+++A G+ ++F + + + + ++++V+PPR+G + D + Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPPRKGCDEVCLDTIVK 444 Query: 324 MAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLV 373 M P+ ++Y SC++ T+ +D++ L GF +ERV+ DMF + H E + ++ Sbjct: 445 MGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQ 496 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 185/423 (43%), Gaps = 52/423 (12%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPVSG--PEQ 53 QC L+ RC CQ +QL K ++N L + P G Sbjct: 70 QCELHK--RCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPY 127 Query: 54 GFRNKAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 +RNKA+ V + ++ + R + DC L + +K ++ G+T Sbjct: 128 RYRNKAQFPVGYDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGIT 187 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLR--KALPWLHEQLPQL---K 166 PY+ +G ++++L+ + +M+ V+ D+ A+ R A L E+L ++ Sbjct: 188 PYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMT 247 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFN------------DVPLWIRPQSFFQTN 214 I+ NI + ++ G+ + + + + + + + I PQSF+Q N Sbjct: 248 SISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVN 307 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 P +LY+TA + +++WDL+CG+G L + Q+ G+EI +AI AK + Sbjct: 308 PKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNN 367 Query: 275 AAELGLTRLQFQALDSTQFATAQGD---------------------VPELVLVNPPRRGI 313 A G+T QF + + P++++V+PPR+G Sbjct: 368 AKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGC 427 Query: 314 GKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTL 371 + D + M+P I+Y SC++ T+A+D++ L + + + Q FD F HT H E + L Sbjct: 428 DEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICL 487 Query: 372 LVK 374 L + Sbjct: 488 LER 490 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 13/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPEQ--GFRNK 58 C A +C C QL K +K+ L E P E +RNK Sbjct: 71 CVY--AAKCGGCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNK 128 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ + K +G D+ DC + + A++ F ++ YN A Sbjct: 129 AQYPIREVDGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEAT 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G +++++ S + M+ V+ KL + + L +P + I +N Sbjct: 189 HKGLARHLVIRNSINFDEAMVCLVING-KKLPHAQDLVERLRA-IPGITGILLNHNTAKG 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ E L + + ++ ++ I SFFQ NP LY A + + Sbjct: 247 NVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSETV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D +CG+G L A ++ G+E +A+A A ++A G+ ++F ++ Sbjct: 307 LDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVVL-- 364 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 G+ ++V+V+PPR+G + + AP ++Y SC+ T+A+D++ + G+ + +VQ Sbjct: 365 GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENGYVVNKVQ 424 Query: 356 LFDMFPHTAHYEVLTLLVK 374 DMFP+T+H E LL + Sbjct: 425 PVDMFPYTSHVETCVLLSR 443 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 412 bits (1060), Expect = e-114, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 179/382 (46%), Gaps = 20/382 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPEQG--FRNKA 59 C + A +C CQ EQL K + +++ ++ V G E +RNK Sbjct: 85 CPV--AKQCGGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKG 142 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V + ++ + G + D+ C + V +K + + + Sbjct: 143 QIPVGITNKQVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKY--------QN 194 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +++L+ ++ + G +M+ +++RS KL+ + L E LP +K + +N+ Sbjct: 195 ADLFRHLLIKDAFASGEVMVVWIVRSS-KLSHKEEMCKELVENLPYIKSVIINVNTREDN 253 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ E L + + +D+ I +SF+Q NP +LY A ++ + + + Sbjct: 254 VILGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVI 313 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFAT 295 DL+CGVG + A + G+EI AI AK +A + + F D+ + Sbjct: 314 DLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLE 373 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 QG P++V+V+PPR+G D + M P+ I+Y SC+ T+A+DI++L G+ + Sbjct: 374 KQGKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQV 433 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFP + H E + LL K+ Sbjct: 434 VQPVDMFPFSFHVESIVLLQKR 455 >UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=170 Tax=Gammaproteobacteria RepID=RUMB_SHESW Length = 389 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 205/378 (54%), Positives = 271/378 (71%), Gaps = 5/378 (1%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNK 58 QC ++ G+C+SC+ I P+ +QL AK+ +L+ LL F + PV+G FRNK Sbjct: 11 QCGYFNRGQCQSCRHIQVPMAQQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNK 70 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 AKMVV G+ P+LG++ G LCDC LYP+ + L F+ +AG+ PY V + Sbjct: 71 AKMVVLGAAHAPVLGIVSPSGEAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKA 130 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +GELK+ILLT SQ G +LRFVLRS + ++ +ALP L + PQ+ V++VNIQP+HMA Sbjct: 131 KGELKFILLTRSQVRGEYLLRFVLRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMA 190 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 I+EG+ EI+LTE L ERFNDVPL+IRP+SFFQTNP VA+QLY TAR+WV + K +W Sbjct: 191 ILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLW 250 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DLFCGVGGFGLHCAT D+ LTGIEI +EAI+CA+ SA +GL ++QF ALDST FA + Sbjct: 251 DLFCGVGGFGLHCATKDIALTGIEIEAEAISCAQISANLMGLEKVQFMALDSTDFAQGKN 310 Query: 299 --DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQL 356 D P+L++VNPPRRGIG+ LC LS APR I+YSSCN +T+AKD+ + G+ + +VQL Sbjct: 311 AADKPDLIIVNPPRRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHIQGYHLTKVQL 370 Query: 357 FDMFPHTAHYEVLTLLVK 374 FD+FPHT H+EVL +LVK Sbjct: 371 FDLFPHTDHFEVLAMLVK 388 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 166/380 (43%), Gaps = 11/380 (2%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C ++D RC CQ P QL K ++ LL + ++ P +RNK Sbjct: 80 RCRVFD--RCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEP-WAYRNKVIA 136 Query: 62 VVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 S S + ++ ++ + + + + C + + A + + + PY+ ++ Sbjct: 137 TFSLSKKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRT 196 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G +++ L+ +++ V S ++ + L ++ P++ I +N+ + ++ Sbjct: 197 GLVRHCLIRVGHVSREVLVCLVCASPI-FPARKQLIQRLRQRHPEITTIVMNVNSRNTSV 255 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G E L + + + I +SF+Q N LY A + + + D Sbjct: 256 VLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLD 315 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATA 296 +CG+G L A ++ G+E+ ++ A ++A L F D+ F A Sbjct: 316 AYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAAR 375 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 +G ++V ++PPR G + L + P I+Y SCN T A+D+R L G+++ + Sbjct: 376 EGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVRTI 435 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 D+FP T+H E + LL + Sbjct: 436 VPVDLFPMTSHVETIVLLQR 455 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 174/393 (44%), Gaps = 24/393 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGP--EQGFRNKA 59 C + RC C W+ P +QL+ K + L AD + C P+ G +RNK Sbjct: 9 CPI--DNRCGGCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKV 66 Query: 60 KMVVSGSVEKP-----LLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 G +K +L ++ GT D +C + A + ++ + + + P Sbjct: 67 VSPFVGIYDKRTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEP 126 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 Y+ R G L++ + + G +M+ V R++ + +K + L + P++ + N+ Sbjct: 127 YDEDRDEGFLRHAQVRVGHNSGEVMVTLVTRTE-QFPTAKKFVRALVSRHPEITTVVQNV 185 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 ++ G+ E L + + + I SF+Q N LY+TA + Sbjct: 186 NSRKTNVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLT 245 Query: 233 PVKHMWDLFCGVGGFGLHCAT------PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + + D +CG G GL +L G+E ++A+A A+ +A G+ +F Sbjct: 246 GTETVMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFV 305 Query: 287 ALDSTQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A D+ + QG +++ ++PPR G +++P+ I+Y SCN T A+D Sbjct: 306 AADAGAYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARDA 365 Query: 344 REL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + L G+RI+ +Q DMFPHT H E + + + Sbjct: 366 KYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 164/382 (42%), Gaps = 15/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C + C CQ + EQL K +++L P+ G +RNK Sbjct: 179 CPV--EKYCGGCQMLDMEYTEQLKRKQKVVEDLFRGVCP---VKPIIGMKDPFHYRNKVH 233 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 V ++ ++++ + + + C + + ++ + + Y+ Sbjct: 234 AVFDRDKRGNIISGIYQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTG 293 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + S +M+ V S + L E+ P++ I NI + Sbjct: 294 YGLLRHVLIRRAFSTNEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIIQNINGRGTS 352 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G E L + + + I +SF+Q NP LY A + + + Sbjct: 353 MVLGNKENVLYGKGYIVDELCGCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVI 412 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--- 295 D +CG+G G+ + Q+ G+E+ +A+ A +A + ++F D+ +F Sbjct: 413 DAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMA 472 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 +GD ++V+++PPR G + D ++ + ++Y SCN +T+ +D+R + G+ E Sbjct: 473 ERGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKLGYAAEG 532 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 V DMFP T H E++ L ++ Sbjct: 533 VWPVDMFPATRHTEIIVELCRK 554 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 166/381 (43%), Gaps = 11/381 (2%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + A +C CQ +QL K D + LL F P +RNK + Sbjct: 5 KCPV--AKKCSGCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDP-YNYRNKVQA 61 Query: 62 VVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V ++ +++ + C L + ++ + L PY+ +R Sbjct: 62 VFRSDRNGRIISGVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTER 121 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+++L+ ++ G +++ V ++ + + L ++ P + +T ++ + Sbjct: 122 GFLRHVLVRVGKNTGEILVTLV-GGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEML 180 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE L + + + I P SF+Q N A +LY A + + D Sbjct: 181 LLGENNEVLYGEGYITDILCGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLD 240 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQALDSTQFATAQ- 297 + G+G G+ + Q+ GIE + A+ A ++ E GLT + F D+ +F + Sbjct: 241 AYSGIGTIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKA 300 Query: 298 --GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERV 354 G + V+++P R G + + L +AP I+Y SCN T A+D++ L + + + Sbjct: 301 KLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDI 360 Query: 355 QLFDMFPHTAHYEVLTLLVKQ 375 Q FDMFPHT H E + + ++ Sbjct: 361 QPFDMFPHTRHVECVVSMSRK 381 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 167/381 (43%), Gaps = 13/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPEQG--FRNK 58 +C Y C C + QL K +++ V G E +RNK Sbjct: 71 ECPYYYL--CGGCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNK 128 Query: 59 AKMVVSGSVEKPLLGMLHR-DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V G +KP +G + D+ C + V +K I + + Y+ + Sbjct: 129 TALPVGGDYKKPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKK 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L++I++ S + MM+ V + L + ++K + +N+ P Sbjct: 189 HKGVLRHIVVRNSFAFDEMMIILVCTKVPE--NLETIKKDILNNFSKIKSLYLNLNPKRT 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ +I + + +R ++ I P+SFFQ N LY+ ++R + + + Sbjct: 247 NVILGDEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---QFA 294 +D++ G+G + A ++ IEI +A+ AK+S+ G++ ++F + Sbjct: 307 FDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAEIEIPKL 366 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 G +P+ V+++PPR G K L + L IIY SCN T+A+D L G+ I Sbjct: 367 LKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNGYEIL 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T H E + L+ Sbjct: 427 EVQPVDMFPQTFHVECVVLMT 447 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 188/382 (49%), Gaps = 13/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRNK 58 C C+ C + +QL K ++ L +P + +P+ E+ G+R Sbjct: 104 CP--SLRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTS 161 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 AK+ V+ + ++G+ R D+ CPL+ + ++ IAR + YN Sbjct: 162 AKLAVARRNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVT 221 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +RG L+Y+L+ S + G M+ FV + ++ W+ ++P++ + N+ Sbjct: 222 RRGLLRYLLIKVSPATGKAMVTFVTA-QREYKRITALAKWVARKIPEVVSVQQNVNASSG 280 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + Q L ++ ++ L I P SFFQ N A A+++YA R W + Sbjct: 281 NVIMGRETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFA 340 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA- 296 DL+CG+GG LH A ++ G+E+ +A+ A+Q+AA L +F A D+ + Sbjct: 341 LDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDL 400 Query: 297 QGDVPEL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 D+P L ++NPPR G + ++ + PR IIY SCN T+A+D+ EL G+R Sbjct: 401 IVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKLGYRTA 460 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 +Q DMFP TAH E + LVK Sbjct: 461 EIQPVDMFPQTAHVESVARLVK 482 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 406 bits (1043), Expect = e-112, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 164/380 (43%), Gaps = 11/380 (2%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + + C CQ++ P +QL+ K + +LL+ F + + P +RNK Sbjct: 109 KCPI--SHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENP-YHYRNKVTA 165 Query: 62 VVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 ++ ++ +GT L +C + A + I L YN Sbjct: 166 AFRRMKSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGT 225 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G ++++ + + G +M+ V S + L P++ + NI ++ Sbjct: 226 GLIRHLQIRVGRKTGQIMVIIVTASPV-FPSKKNLAKALVTAHPEITTVVQNINMKDTSM 284 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G+ + + + + I P SF+Q NP LY A + + + D Sbjct: 285 VIGDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVID 344 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---A 296 +CG+G G+ + ++ G+E+ A+ A+ + + + + D+ +F Sbjct: 345 AYCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVAD 404 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 +GD ++V ++PPR G + + T+ P+ ++Y SC +++A+D++ + G+++ R+ Sbjct: 405 EGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRM 464 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 DMFP T E + LL + Sbjct: 465 TPVDMFPLTRGVETVVLLTR 484 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 170/378 (44%), Gaps = 11/378 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP---VSGPEQ-GFRNK 58 C ++ +C CQ + P+QL K + N L + + VS P++ +RNK Sbjct: 73 CPIFR--QCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V + +G+ R+ + C ++ V+ ++ + ++ + PY+ Sbjct: 131 IQLPVMMKPDGLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERT 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L+++L+ + ++ V S K L+ + + P++K + NI Sbjct: 191 GKGVLRHLLIKSALQTSESLVILVT-SQEKCTSLQALAQQIMQACPEVKGVIQNINRKRD 249 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G L + + E D I P +FFQ NPA A +Y K Sbjct: 250 NVILGTDWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTF 309 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D FCGVG L A + GIE +AI A +A ++ F + + Sbjct: 310 LDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQSL 369 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 D+ ++V +NPPR+G + L + L + P I+Y SC+ T+A+D++ L G++IE+V Sbjct: 370 KDI-DVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQHGYQIEQVT 428 Query: 356 LFDMFPHTAHYEVLTLLV 373 FDMFP TAH E + L Sbjct: 429 PFDMFPQTAHVETVVKLT 446 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 109/383 (28%), Positives = 172/383 (44%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE--QGFRNKA 59 +C L G C C + P EQL K A L+ LL F AP+ G E +RNK Sbjct: 34 RCPLEKRG-CGGCPMLSLPYEEQLKRKQAKLEELLGKFGP---VAPILGMEHPWHYRNKV 89 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + K L+ ++ GT + C L+ AA++ P++ R Sbjct: 90 ISSFAWGPGKNLVSGIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENR 149 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + G ++++L S S G ++ V S L R + E P + + N+ P Sbjct: 150 RTGLIRHVLCRHSLSTGEVLAVLVTASPV-LPGARAFAARVKELCPAIVTLAQNVNPRPG 208 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + + G+ E L + + + V I P SF+Q NP LY+TA R + + Sbjct: 209 SAVLGDREKILYGRGYIEDVLCGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERV 268 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---A 294 D +CGVG GL A + G+E+ A ACA +A + +F+ D+ F Sbjct: 269 LDAYCGVGTIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGM 328 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 A+G+ ++V ++PPR G D L ++P +Y SCN +T +D+ L G+R E Sbjct: 329 AARGEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAE 388 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +Q DMFPHT H E + +L ++ Sbjct: 389 SIQGVDMFPHTEHIETVAVLTRR 411 >UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NR03_9MICC Length = 409 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 173/377 (45%), Positives = 247/377 (65%), Gaps = 4/377 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA++P +W PV+ E GFRNKAK Sbjct: 33 MECAYFRDDLCSSCPRIETAYTAQVQAKQEHARALLANYPQLQWLDPVTSAEAGFRNKAK 92 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 93 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 152 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL E+LP L V++VN+ +A Sbjct: 153 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMGWLQERLPNLAVLSVNLLREPVAR 211 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 212 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 271 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 272 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVSS 331 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 332 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 391 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFPHT HYEV+TLL + Sbjct: 392 DMFPHTDHYEVMTLLKR 408 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 103/389 (26%), Positives = 166/389 (42%), Gaps = 19/389 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRNK 58 CAL+ G C C + PEQL KT +++ L E A G + +RNK Sbjct: 77 CALF--GDCGGCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNK 134 Query: 59 AKMVVSGSVEKPLLGMLHRDGT----PEDLCD---CPLYPASFAPVFAALKPFIARAGLT 111 A VS + LG L R D C L V A + + Sbjct: 135 AHFHVSRDSGRLALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVP 194 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 Y+ +RG L+ +LL + + G +ML V + R+ L + P + + N Sbjct: 195 LYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQNWPGE-REFAERLTAEEPGVVSVIRN 253 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + + + G + A+ E + I P SFFQ NP A + Y AR + Sbjct: 254 VNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEIARLFAGL 313 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + + D + G+G L A+ + G E A+A A+++A G+ ++F+ Sbjct: 314 TGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373 Query: 292 QFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP- 347 A+G ++ +++PPRRG G + L + PR ++Y SC T+A+D+ L Sbjct: 374 DLLPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGRLAE 433 Query: 348 -GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 GF + +VQ DMFP T+H E + L ++ Sbjct: 434 LGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 171/382 (44%), Gaps = 12/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPEQ--GFRNKA 59 C +Y +C C +L K ++ ++ + G+RNKA Sbjct: 84 CPVYR--QCGGCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKA 141 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V+ K + G + C DC L +FAP+ + FI L PY+ Sbjct: 142 QFPVALRDGKAVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNH 201 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ + L E+ + G +M+ V + + + L P++K + VN Sbjct: 202 TGLIRNLYLREAPATGEIMVCLV-ATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTN 260 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ + + + + V + + P SF+Q N A +LY A ++ + + Sbjct: 261 VILGDRCSVVWGKPVIHDVLRGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLV 320 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA-- 296 DL+CG G GL A ++ G+EI A+ A++SA G+ +F D+ + A + Sbjct: 321 DLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSLA 380 Query: 297 -QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 QG P++V+V+PPR+G + + MAP+ I+ SCN T A+D L G+R+E Sbjct: 381 QQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQGYRVEE 440 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 V D+F T H E + LVK+ Sbjct: 441 VAAADLFSRTLHVECVISLVKE 462 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 402 bits (1034), Expect = e-111, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 158/380 (41%), Gaps = 13/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVS--GPEQGFRNK 58 C + A RC SCQW P QL AK ++ L E PV G+RNK Sbjct: 82 CPV--AERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNK 139 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + ++ + L CP+ + P+ AA + I G + Y+ Sbjct: 140 STFPIGRDARGEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEK 199 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RG L+++ L + G +L FV+ T L+ ++ A L ++ L + +N Sbjct: 200 HHRGALRHLGLRIGERTGQRLLTFVVNGQT-LSGIKPAAQALMDRFADLVGVCLNTHTER 258 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G L Q + E + I P +FFQ + A L + Sbjct: 259 GNTIFGPQTRCLAGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQT 318 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CG+G L A + GIE ++ A+Q+A G+ +F A Sbjct: 319 VVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLP- 377 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 ++V+V+PPR+G + + + P ++Y SCN T+A+D++ L G+ + V Sbjct: 378 -DLRADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVAGGYCLVGV 436 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 Q D+F T H E + L + Sbjct: 437 QPVDLFAQTHHVECVATLER 456 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 169/398 (42%), Gaps = 28/398 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPE-QGFRNK 58 C + G C C+W QL AK + L F E + P G+RNK Sbjct: 72 CRYF--GTCGGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNK 129 Query: 59 AKMVVSGSV-------------EKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALK 102 + S ++ LH G DL +C L + L+ Sbjct: 130 MEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELR 189 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F G P+++ R G L+++++ G +M+ V + A++ + +L EQ Sbjct: 190 AFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVTSRYDE-ARMAELGAFLQEQF 248 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P++ + I + GE + + + I P +FFQTN A +LY Sbjct: 249 PEVTTLVNTINSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLY 308 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 AR+ P ++DL+CG G + A + G+E+ + A+ A+ +AA G+T Sbjct: 309 EVARELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITN 368 Query: 283 LQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 F A D + T P++V+V+PPR G+ + + + P +Y SCN QT Sbjct: 369 CTFVAGDLLEVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQT 428 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D++ L +RIE VQ D+FPHT H E + L + Sbjct: 429 QARDLKLLRDLYRIEAVQPVDLFPHTDHVESVVALRAR 466 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 175/374 (46%), Gaps = 14/374 (3%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPE--QGFRNKAKMVVSGS 66 C CQ P QL K A +++ L P+ G E +RNKA+ V G Sbjct: 82 ECGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGC 141 Query: 67 VEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 +G +R + + + DC + + + A ++ ++ + Y+ G ++ Sbjct: 142 EAGAEIGF-YRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRN 200 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 ++ + G +M+ V + L + L L + LP + + NI + G Sbjct: 201 LMTRKGFKSGELMVVLVTLGE-ALPFEAELLATLSD-LP-ITTLVQNINDERTNRILGAN 257 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L + + ++ +++ I P SFFQ NP LY++A ++ + ++D++CG+ Sbjct: 258 NRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGI 317 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---AQGDVP 301 G L A ++ GIE AI+ A+++AA G+ +F + Q AQG Sbjct: 318 GTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELYAQGVTA 377 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDM 359 ++V+++PPR+G K + L MAPR ++Y SCN QT+A+D+ L GF ++ VQ DM Sbjct: 378 DVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFMLDEVQPVDM 437 Query: 360 FPHTAHYEVLTLLV 373 FPH+ H E + L Sbjct: 438 FPHSMHVEAVARLS 451 >UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococcaceae RepID=C6R4A2_9MICC Length = 377 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 174/378 (46%), Positives = 245/378 (64%), Gaps = 4/378 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA P +W PV+ E GFRNKAK Sbjct: 1 MECAYFRDDLCSSCPSIETAYTAQVQAKQEHARALLAAHPQLQWLDPVTSAEAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 61 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 120 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL EQLP L V++VN+ +A Sbjct: 121 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMDWLQEQLPNLAVLSVNLLREPVAR 179 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 180 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 239 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 240 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVSS 299 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 300 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 359 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT HYEV+ LL +Q Sbjct: 360 DMFPHTDHYEVMVLLQRQ 377 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 162/376 (43%), Gaps = 11/376 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGPEQG--FRNKAKMVV 63 A +C CQW +QL+ K L++ L P + G +Q +RNK + Sbjct: 90 ADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPM 149 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + +PL ++ G+ +L CP+ +K + G + Y+ +R +G Sbjct: 150 AKPEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGH 209 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L + ++L V S +L L ++ P L + +N+ + Sbjct: 210 LRHLGLRIGRRTREVLLTLVSCS-RRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIF 268 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + + +L E F LWI SFFQ N A + D + + + D + Sbjct: 269 GPETEVIAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAY 328 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG+G L A + G+E EA+A A+ +A G+ QF Q Sbjct: 329 CGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLP-TLPPA 387 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 ++V+++PPRRG + + + L P I+Y SC+ T+A+D++ L +R+ + + D Sbjct: 388 DIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLTQWRAAD 447 Query: 359 MFPHTAHYEVLTLLVK 374 FP T H E + L + Sbjct: 448 FFPQTGHVEGVAFLER 463 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 174/394 (44%), Gaps = 23/394 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPE--QGFRN 57 QC G C C+ + +QL K + + L + E PV + G+RN Sbjct: 80 QCPY--CGHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRN 137 Query: 58 KAKMVVSG------------SVEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAALK 102 K + + +++ LH GT D+ C L P + ++ Sbjct: 138 KMEFSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVR 197 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 + +G+ Y + +G ++++L S + M+ V ++ + L+ L ++ Sbjct: 198 AYARASGVPAYGLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRR-LLQPLADLLADRY 256 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P++ + NI + +GE EI L +++R I SFFQTN A +LY Sbjct: 257 PEVVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISANSFFQTNTRGAERLY 316 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 AR++ + + DL+CG G + + ++ G+EI +A A + ++ Sbjct: 317 TVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSN 376 Query: 283 LQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 ++F A D + ++++++PPR G+ K + + + MAP I+Y SCN T+A+D Sbjct: 377 VRFVAGDVKETLPRLDCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPATLARD 436 Query: 343 IRELP-GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + L + + VQ DMFPHT H E + L K+ Sbjct: 437 VAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 159/369 (43%), Gaps = 11/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLL--ADFPVEEWCAPVSGPEQ-GFRNKAKMVVSGSVEKPL 71 +QL K + NLL AD + + PE+ G+RNKA++ V K Sbjct: 81 SLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKLD 140 Query: 72 LGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES 130 +G + L V ++ + + + Y+ +GE++Y+ + S Sbjct: 141 IGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRRS 200 Query: 131 QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTE 190 ++ G +M+ V QL++ + E + + + +N P ++ G+ + L Sbjct: 201 KATGEIMVILVCLH-KDFPQLKEVTKEISE-IKGVTSVVLNHNPKKTNVILGKKDYLLWG 258 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + + ++ DV I PQSFFQ N +LY A P + D + G+G GL Sbjct: 259 EPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGLS 318 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVN 307 A + G+E+ A+ A +A G+T ++ + + +G +++ V+ Sbjct: 319 VAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKEGLKTDVIFVD 378 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAH 365 PPR+G+ D P+ I+Y SCN TM +D++ G+ + + DMFP T H Sbjct: 379 PPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFDEIDPVDMFPQTPH 438 Query: 366 YEVLTLLVK 374 E + +L + Sbjct: 439 VEAVAVLER 447 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 165/381 (43%), Gaps = 15/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRN 57 C + A +C CQW QL+AK +K+ +A E A P+ G+RN Sbjct: 73 NCIV--ADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRN 130 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + G ++ ++ G+ +L CP+ P+ AALK + Y Sbjct: 131 KVTYPL-GRRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQ--PWPIYRE 187 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 +++ L Q G ++ VL +A WL + + + VN Sbjct: 188 QTHEPGFRHLGLRIGQRTGEQLITLVLAGPLPAGLAAEAEGWLQ-RFQGVIGVCVNFNHH 246 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G+ L + L E V I +FFQ N A A QL T RDW+ + Sbjct: 247 VGNRIFGDETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQE 306 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DL+CGVG L A ++ G+E+ S ++ A +A G+ F + ++ Sbjct: 307 RLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLP 366 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIE 352 ++++++PPR+G + + D + P ++Y SC+ T+A+D+ L +++ Sbjct: 367 RYDQAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLA 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 ++Q DMFP TAH E + LL Sbjct: 427 KIQPLDMFPQTAHVETIALLT 447 >UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Actinomycetales RepID=C5C2M0_BEUC1 Length = 376 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 179/376 (47%), Positives = 237/376 (63%), Gaps = 3/376 (0%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC+ YDA CRSC I +P +QL+ K A + L W P E+ FRNKAK Sbjct: 1 MQCSYYDAALCRSCTLIERPYADQLAGKQAHARAALTGHDGVAWLPPHPSAEEQFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 MVV+GS P++G+L DG DL C L+ + L F+ARA L PY++ +RG Sbjct: 61 MVVTGSAVDPVIGILGPDGEGVDLRWCGLHEPPVTAALSPLAEFVARANLAPYDLRTRRG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELKY+L+T S DG +M+RFVLRS LA++RK LP L E LP+L V +VN+QP H A++ Sbjct: 121 ELKYLLVTASP-DGEVMVRFVLRSTEALARIRKHLPALQEALPRLAVASVNVQPEHSAVL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG TEI LT Q L N + L +RPQSFFQTN AVA+ LY A DW+ +L + DL Sbjct: 180 EGPTEIPLTPAQTLRMAVNGLDLHLRPQSFFQTNTAVAAALYREATDWIDELAPSSVVDL 239 Query: 241 FCGVGGFGLHCATPD--MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 +CGVG F LH A D ++ G+E ++EAIA A SAA+ GL +F D+T FA Sbjct: 240 YCGVGPFALHAAARDTERRVLGVETSAEAIASATHSAADAGLANARFAVGDATAFAADDD 299 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFD 358 VP++V+VNPPRRGIG L +L R ++YSSC++ ++A+D+ +P R R ++ D Sbjct: 300 GVPDVVIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSLRPVRARVLD 359 Query: 359 MFPHTAHYEVLTLLVK 374 MFP TAHYEVLTLL + Sbjct: 360 MFPQTAHYEVLTLLER 375 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 176/382 (46%), Gaps = 13/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG---PEQGFRNK 58 QC Y +C CQ+ E+L AK +++ L + PV + +RNK Sbjct: 75 QCIHYT--KCGGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNK 132 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V E P +G R + DC L P + A + AA ++ ++ Y+ Sbjct: 133 VQFPVQPGPEGPRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKT 192 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 RG ++++ + +++ G ++ ++ + Q + L P L + + + Sbjct: 193 GRGLVRHVYVRVNRA-GQSLVCLLVNG-KSVPQEDALVQALRNVEPGLVGVVLGVNEKKN 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G++ L Q L + + SF+Q N A LY A D+ + + Sbjct: 251 NVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 DL+CG+G L A ++ G E+ +A+ A+++A G+ +F D+ + A A Sbjct: 311 LDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARAL 370 Query: 298 GD---VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 P++V V+PPR+G+ + + D + +MAP ++Y SC+ T+A+D++ G+ + Sbjct: 371 AARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVLR 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 + + DMFP TAH E + LL + Sbjct: 431 KAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 158/369 (42%), Gaps = 10/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVSGSVEKPLL 72 QL+ K ++ L V+ AP G E G+RNKA++ V K Sbjct: 94 PLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLET 153 Query: 73 GMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R + D + + + G++ Y K+G +++I+ Sbjct: 154 GFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGY 213 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ + + KL L +LP+LK + NI ++ G+ + + Sbjct: 214 YSHELMVVIITNT-KKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGE 272 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + ++ I P SF+Q NP S LYA A + P + D + G+G L Sbjct: 273 DDIHDQLMGKDFVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSV 332 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FATAQGDVPELVLVNP 308 A ++ G+++ AI A+++A +T +F D+ + +G P +V V+P Sbjct: 333 ADKVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADEGLKPNVVFVDP 392 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE-RVQLFDMFPHTAH 365 PR+G+ + L D + M P +Y SCN T+A+D ++ GF IE VQ D FP T H Sbjct: 393 PRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTH 452 Query: 366 YEVLTLLVK 374 E +T+ K Sbjct: 453 VESITVFKK 461 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 166/388 (42%), Gaps = 21/388 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C C C P EQL K ++ +LL + E P+ G +RNKA Sbjct: 10 RCPY--EKWCGGCSMQGLPYKEQLKRKEKEVADLLKAYGRPE---PILGMNFPYYYRNKA 64 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V+ GS++ ++ + G+ ++ C + + A+++ + + PYN Sbjct: 65 HAVLGGSLKGKIVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDT 124 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 RG L++I+ + G +ML V +K + L + P + I NI Sbjct: 125 GRGCLRHIIARRTADGGQIMLILVTA-QAAFPSRKKFVSALRKAHPNITTILQNINGQST 183 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G+ L + +R I P +F+Q N +LY A D + + Sbjct: 184 SVVLGDRYEVLYGPGYIEDRLMGARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERV 243 Query: 238 WDLFCGVGGFGLH----CATPDM---QLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 D +CG G G+ A +L G+E A+ A+ +A GL + +F D+ Sbjct: 244 LDTYCGTGTIGIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADA 303 Query: 291 TQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 F A+ G +LV ++PPR G + L + P I+Y SC+ +T A+D++ L Sbjct: 304 GAFMLAEAEAGRSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYLD 363 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + I R+ DMFP T E + LL K Sbjct: 364 SAYAIRRIAPVDMFPFTDGIENVVLLEK 391 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 14/385 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNK 58 +C + G+C C P +QL K ++ L ++ + P+ G +RNK Sbjct: 72 KCPAF--GQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNK 129 Query: 59 AKMVVSGSVEKPLL--GMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 + + L GM + + + +C + + + A + L Y Sbjct: 130 MEFTFGDLKKGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYR 189 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTK--LAQLRKALPWLHEQLPQLKVITVNI 172 + + G L+ +++ ++++ G +++ V S L + + + ++ + L I I Sbjct: 190 IMAREGYLRNLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKG-NLVGILHTI 248 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 +++ + L + + E + I P SFFQTN A +LY+ RD++ + Sbjct: 249 NDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGES 308 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 K ++DL+CG G G A ++ GIE+ EA+ A+++A L +F A D Q Sbjct: 309 KSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQ 368 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 P++++++PPR G+ +Y+ I+Y SCN +T+ +D++ L G+ Sbjct: 369 VIKEVKQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVLVENGYV 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 IE+V+ DMFP T H E + L ++ Sbjct: 429 IEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 174/383 (45%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE-QGFRNKA 59 C +Y +C C QL AK +K+ E+ + G+RNK Sbjct: 71 CPVYT--KCGGCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKL 128 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + + L+ + + + C L P F + A LT Y+ Sbjct: 129 QIPIGTDKDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETT 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L+++ L + G + L V+ + + +++ L E+ P++ +N+ Sbjct: 189 HKGILRHLYLRKGYYSGEICLCIVVAKN--VPEIKILSDRLLEKYPEIVSSVINVNNRDT 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ EI LT + + + + I P++F+Q N A QLY++A D+ K + Sbjct: 247 NVILGDEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEP-KGKTV 305 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FA 294 DL+CG G GL A ++ G+EI EAI AKQ+A G+T +F D+ + Sbjct: 306 LDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARIL 365 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 ++ P++++V+PPR+G G+ C+ ++ + I+ SCNA T A+D G+ + Sbjct: 366 HSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAELGYSTD 425 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 + DMF T H E + LL + Sbjct: 426 KCVAVDMFSGTNHVETVVLLSHK 448 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 107/407 (26%), Positives = 178/407 (43%), Gaps = 33/407 (8%) Query: 1 MQCALYDA--GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPV--SGPEQG 54 +QCA + A G C C W P EQL K + + L + P+ S E+G Sbjct: 70 VQCAPFCAHFGDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERG 129 Query: 55 FRNKAKMVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 FRNK + S + L L R + D+ +C L + A++ +GL Sbjct: 130 FRNKMEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPG 189 Query: 113 YNVARKRGELKYILLTE----------SQSDGG---------MMLRFVLRSDTKLAQLRK 153 ++ +R+ G +++++ E + ++G ++ R + + Sbjct: 190 WDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSR 249 Query: 154 ALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQT 213 L + P++ + +++ I GE + + + L ER L + P SFFQT Sbjct: 250 LAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQT 309 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N A A LY AR P +WDL+ GVG LH A + G EI EA+ A+ Sbjct: 310 NTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARA 369 Query: 274 SAAELGLTRLQFQALDS----TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFI 329 +AA + F + D + +G P +V+V+PPR G+ + + + +S P I Sbjct: 370 NAARNNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERI 429 Query: 330 IYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 +Y SCN TMA+D G+ ++ + D+FPH+ H E + LL + Sbjct: 430 VYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 97/402 (24%), Positives = 162/402 (40%), Gaps = 31/402 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF----PVEEWCAPVSGPEQGFRNK 58 C + G C CQW EQL K + + L V+ A S +RNK Sbjct: 88 CPHF--GVCGGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNK 145 Query: 59 AKMVVS---------------GSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAAL 101 + S LG+ R ++ DC L A + Sbjct: 146 MEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKET 205 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL-PWLHE 160 + + +G+ Y + +RG +++++ E + G +L V + L L Sbjct: 206 RDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVS 265 Query: 161 QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 + P + + ++ + G+ + + ER + I +SFFQTNP A + Sbjct: 266 RFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQTNPFSAEK 325 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY + +WDL+CG G L A ++ G E+ +AI A +A G+ Sbjct: 326 LYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGI 385 Query: 281 TRLQFQALDS-TQFATAQG-----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC 334 +F + D + A+G P++V+ +PPR G+ + L M P IIY SC Sbjct: 386 ENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVSC 445 Query: 335 NAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 N T+A+D+ + I V+ FD+FPHT H E + + ++ Sbjct: 446 NPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 110/387 (28%), Positives = 168/387 (43%), Gaps = 22/387 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPE--QGFRNKA 59 C +D RC C W QL KT +K LL G E +RNK Sbjct: 81 CPHFD--RCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKM 138 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + S L LH G + C + + + L Y+ Sbjct: 139 EFTFSPEG----LLGLHEQGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKD 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ----LPQLKVITVNI 172 G L+++++ ES + G +M+ ++ +L++A L E+ LP++K + Sbjct: 195 THEGLLRHVMVRESFATGEVMVAL-FATEAPEGELKQAADDLTERITKALPEVKSLLWLE 253 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 ++ E L + + + + +FFQTNP A++L A + + Sbjct: 254 NRAWADRIQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQ 313 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST- 291 P + M DLFCGVG F L A L GIEI +I AK++A + G+ F A D+ Sbjct: 314 PHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDARR 373 Query: 292 --QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-- 347 Q PEL+L++PPR G G + + P I+Y SCN +T A DI EL Sbjct: 374 GIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVPF 433 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ ++ VQ DMFPHTAH E++ L+ + Sbjct: 434 GYTLKTVQPVDMFPHTAHVELVALMSR 460 >UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 Tax=Bacteria RepID=D1BRN3_XYLCX Length = 411 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 190/411 (46%), Positives = 252/411 (61%), Gaps = 38/411 (9%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPEQGFRNKA 59 MQC YDAGRCRSC + P Q++ K ++ LL F P W PV+ E GFRNKA Sbjct: 1 MQCHHYDAGRCRSCTLLDVAYPVQVADKERHVRGLLEPFAPDAAWLPPVTSAEGGFRNKA 60 Query: 60 KMVVSGSVEKPLLGM-----------LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARA 108 KMVV+G+VE+P++G+ HR T DL DCPLYP + F L + RA Sbjct: 61 KMVVTGTVEEPVIGIVGALPQGYDRVGHRGPTGVDLTDCPLYPPTLQDAFGPLAELVTRA 120 Query: 109 GLTPYN-----------VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW 157 L PY+ A RGELK++++T S + G +M+R VLRS +A+LRK LPW Sbjct: 121 RLQPYDLTPSRGRVTPRDAAGRGELKHLIVTVSPA-GALMVRLVLRSQEPVARLRKHLPW 179 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERF----NDVPLWIRPQSFFQT 213 L LP L V++VN+QP H A++EGE EI LTE++ L + L +RPQSFFQT Sbjct: 180 LQTALPNLAVLSVNLQPEHKAVLEGEREIVLTERETLPMTLPVRPGGLTLHLRPQSFFQT 239 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N VA+ LY A W+ + +WDL+CGVGGF L CA P +TGIEI++EA+A A+ Sbjct: 240 NTDVAAALYRQAAQWIDDVAPASLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQV 299 Query: 274 SAAEL--------GLTRLQFQALDSTQFAT--AQGDVPELVLVNPPRRGIGKPLCDYLST 323 + AEL + ++F A D+T FA DVPELV+VNPPRRGIG L D+L + Sbjct: 300 TRAELEATDGGPAAMAGVRFAAGDATAFALGCDPADVPELVIVNPPRRGIGPALADWLES 359 Query: 324 MAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + R+++YSSCNA T+A+D+ +P R +V+L DMFP T HYEVLTLL + Sbjct: 360 SSARWVLYSSCNADTLARDLERMPSLRPAKVRLLDMFPQTRHYEVLTLLER 410 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 11/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQ-GFRNKAKMVVSGSVEKPL 71 +QL K + NLL +E E ++ PE+ G+RNKA++ V + Sbjct: 81 SLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLE 140 Query: 72 LGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES 130 +G R L V A++ + + + Y+ GE++Y+ + S Sbjct: 141 IGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRRS 200 Query: 131 QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTE 190 +S G MM+ V QL + Q+P + + +N P ++ G + + Sbjct: 201 KSTGEMMVILVCLH-KDFMQLPNVAAEVS-QIPGVSGLILNHNPKKTNVILGPKDYLVFG 258 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + ++ D+ I PQSFFQ N +LY A P + D + G+G GL Sbjct: 259 NDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLS 318 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLVN 307 A + GIE+ +AI AK +A +T ++ + + G ++V V+ Sbjct: 319 VAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLKTDVVFVD 378 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAH 365 PPR+G+ + P+ I+Y SCN T+ +D++ + R+ DMFP T H Sbjct: 379 PPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMFPQTPH 438 Query: 366 YEVLTLLVK 374 E +T+L + Sbjct: 439 VESVTVLER 447 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 162/372 (43%), Gaps = 12/372 (3%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV--SGPE--QGFRNKAKMVVSGSVE 68 + EQL K ++N++ +++ + G E +RNK+ + V Sbjct: 75 GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNG 134 Query: 69 KPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 + +G R ++ C + + L+ I+ L+ Y+ G +++I+ Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMF 194 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 + +M+ V + K +L + + + + ++ I +NI ++ G+ Sbjct: 195 RTNTLKSEIMVGIVAK--EKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTEN 252 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L + + + + + I +SF+Q NP LY+ A + + D +CG+G Sbjct: 253 LFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIGTI 312 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL---DSTQFATAQGDVPELV 304 L A ++ GIEI A+ A ++A +T ++F D + +Q + V Sbjct: 313 SLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLISQDVKLDAV 372 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPH 362 +V+PPR+G + L+ M I+Y SCN T+A+D+ + G+++ VQ DMFP Sbjct: 373 IVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLGYKLGSVQPVDMFPG 432 Query: 363 TAHYEVLTLLVK 374 T H E + LL K Sbjct: 433 TYHVETVVLLSK 444 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 166/381 (43%), Gaps = 12/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C ++ C CQ Q+ KT +K+ L VE + +RNK Sbjct: 70 KCPVFKP--CGGCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNK 127 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCD-CPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 +M + + + G + CD C + + +K + + + PY+ Sbjct: 128 VQMPIGVKGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLS 187 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G +K+IL +ML + D K+ + K + + ++ +K + NI Sbjct: 188 HQGNIKHILTKHGYHSNEIMLVLISYLD-KINNVDKLVAEITKEFSMIKTVIQNINHRID 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ EI L + + D I +SF+Q NP +LY A ++ + + Sbjct: 247 NVILGDKEIILFGDGFIYDNLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D +CG+G L A ++ G+EI AI A+ +A + ++F+ D+ ++ Sbjct: 307 LDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIEL 366 Query: 298 GDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + ++V V+PPR+G K DYL P IIY SC+ T A+DI+ L ++++ Sbjct: 367 VNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQVD 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 Q DMFPHT H E + L Sbjct: 427 MCQPVDMFPHTTHIENIIRLE 447 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 175/383 (45%), Gaps = 14/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPE--QGFRNK 58 C+ Y +C CQ EQL K +++ L + P G E +RNK Sbjct: 78 CSEYM--KCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNK 135 Query: 59 AKMVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + +LG E C + + A L+ I + L PYN Sbjct: 136 IHLHAGRKNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKH 195 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 K+G L+ ++L ++++ G +ML V S L L Q P + I NI + Sbjct: 196 SKKGLLRGVMLRKAEATGQVMLVLVTVSGN-LPGQSTFTRELVNQCPDITSIIRNINNGN 254 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +++ G + ++ + ++ D+ +I SF+Q NP +LY A ++ + Sbjct: 255 NSLLLGSVNKLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNET 314 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D +CG+G ++ + ++TG+E + A+ A+++AA L ++F + + Sbjct: 315 VLDAYCGIGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKLLPE 374 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 + + ++++++PPR+G + + + ++ M IIY SCN T+A+D+ L G+ I Sbjct: 375 FAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLGYGI 434 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 VQ DMFP T+H E+ T L K Sbjct: 435 IEVQPVDMFPQTSHIEICTFLSK 457 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 393 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 166/407 (40%), Gaps = 41/407 (10%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSG-PEQGFRNKAKMVV 63 A +C CQW QL AK + L E ++ G+RNK + Sbjct: 79 ADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPL 138 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S S E + ++ G+ +L CP+ F P+ +K I R Y+ ++ G Sbjct: 139 SISNEGEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGI 198 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQL------RKALPWLHEQLPQLKVITVNIQPV 175 L+++ L + G ++L V+ + + +A WL E +L + +N Sbjct: 199 LRHLSLKIGEKTGEIILTLVVNGSEENPEKLLPGITVQAQKWL-EDYSRLVGVCLNYNSK 257 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G+ + + + + E+F+ + + P +FFQ N +L + + Sbjct: 258 ATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSE 317 Query: 236 HMWDLFCGVGGFGLHCATPDMQ-------------------------LTGIEIASEAIAC 270 + D +CGVG F L A Q + G+E+ AI Sbjct: 318 IIVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQ 377 Query: 271 AKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 AK +A LT + F + P++VL++PPR+G + + + L + P I+ Sbjct: 378 AKFNAKINHLTNVHFYEGKVERLLPQLEVKPDIVLLDPPRKGCDRSVLETLLEILPERIV 437 Query: 331 YSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SC T+A+D++ L + + +VQ D FP TAH E L+K Sbjct: 438 YISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 10/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PV--SGPEQGFRNKAKMVV 63 A +C CQW Q+ +K + + L P+ S G+RNKA + Sbjct: 86 ADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPL 145 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S S + +R G+ ++ CP+ + +K I G + Y+ +K+G+ Sbjct: 146 SRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGK 205 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L Q G M+L + L L + E+ P L I +NIQP + Sbjct: 206 LRHLSLRIGQRTGEMLLTLISAHKG-LPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIF 264 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ + + + E+F D+ + +FFQ N A L + + + + D + Sbjct: 265 GDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAY 324 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 GVG F L A Q IE+ +++ +++A + + F A ++P Sbjct: 325 AGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIP 384 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG---FRIERVQLFD 358 +++L++PPR+G + + P I Y SC T+A+D++ L + I VQ D Sbjct: 385 DVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQGCD 444 Query: 359 MFPHTAHYEVLTLLV 373 FP TAH E +L Sbjct: 445 FFPQTAHVECAVILK 459 >UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Coriobacteriaceae RepID=C8WNQ3_EGGLE Length = 438 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 93/410 (22%), Positives = 165/410 (40%), Gaps = 41/410 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGF--RNKAK 60 C + C +CQ + P +QL++K + L AD P+ G ++ + RNK Sbjct: 22 CPV--ERECGACQHVGVPYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVV 79 Query: 61 MVVS----------------------------GSVEKPLLGMLHRDGTPEDL--CDCPLY 90 + + +L ++ G+ + C + Sbjct: 80 SPYAPGRKLQGSANARAGKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIE 139 Query: 91 PASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ 150 + ++ + R G+ PY G L++ ++ + G +++ V Sbjct: 140 NEEAKRIIRTVRDLMPRFGIEPYREDSGTGFLRHAVVRVGHTSGEILVTLVTNG-RAFPA 198 Query: 151 LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSF 210 R L + P++ + N+ ++ GE E L + ++ + I QSF Sbjct: 199 SRAFCRELVRRCPRITSVVQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSF 258 Query: 211 FQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATP-DMQLTGIEIASEAIA 269 +Q N LY A D + D +CG G GL A Q+ G++ + A+ Sbjct: 259 YQVNAVQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVR 318 Query: 270 CAKQSAAELGLTRLQFQALDSTQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 A+++A G+ +F D+ F A GD +++L++PPR G + T+AP Sbjct: 319 DARENAKHNGVENARFAVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAP 378 Query: 327 RFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 R I+Y SCN T +D+ L G+ + VQ DMFPHT H E + L+ + Sbjct: 379 RRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 99/392 (25%), Positives = 169/392 (43%), Gaps = 22/392 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGP-EQGFR 56 C+ + G C C + P Q+ K +K L+ D E+ P E G+R Sbjct: 72 CSHF--GDCGGCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYR 129 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL LH+ G+ D+ DC L + + + L Sbjct: 130 NKMEFSFGDEFKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNY 189 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKL--AQLRKALPWLHEQLPQ------ 164 Y+ G L+++L+ + G +++ + S T + + L L E L Sbjct: 190 YHKMSHEGYLRHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGS 249 Query: 165 LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 + I + +++ + L Q + E + I SFFQTN A LY Sbjct: 250 IVGILHTVNDSLADVVQSDRTDILDGQDFIFEEVLGLKFKISTFSFFQTNSLGAEVLYNC 309 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 RD+V + K ++DL+ G G A ++ G+EI EA+ A+++A+ LT + Sbjct: 310 VRDFVGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCE 369 Query: 285 FQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 F A D + + P+L++++PPR GI D + ++Y SC ++A+D+ Sbjct: 370 FIAGDVLKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSSLARDLV 429 Query: 345 ELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+ +E+V+ DMFP T H E + LL + Sbjct: 430 VLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 157/401 (39%), Gaps = 32/401 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRNK 58 C ++ G C C+W+ QL K + + L E PV +RNK Sbjct: 84 CPVF--GSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNK 141 Query: 59 AKMVVSG--------------SVEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAAL 101 + S + K H G E DL C L V L Sbjct: 142 VEFSCSNMRYLLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVL 201 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 + F GL PY G L+ ++L S+ +M+ V K A ++ L Sbjct: 202 RDFAIERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDK-ALMQALKERLEAA 260 Query: 162 LPQLK-VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 +P+ + + N+ + GE E ++ + ER D+ I SFFQTN A Sbjct: 261 MPEQQMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAET 320 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY P ++DL+CG G L+ A Q GIE+ A+ A+ +A GL Sbjct: 321 LYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGL 380 Query: 281 TRLQFQALDSTQFATAQG-----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 + F D F Q P +++ +PPR G+ D + + P I+Y SCN Sbjct: 381 SNTVFFQADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCN 440 Query: 336 AQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 +A+D +E+ G+R+ Q DMFP T H E + + Sbjct: 441 PDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 165/370 (44%), Gaps = 11/370 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPEQG--FRNKAKMVVSGSVEKP 70 PEQL KT +K+ L + A G E +RNKA++ V Sbjct: 82 DLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVL 141 Query: 71 LLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTE 129 G ++ L D + V AL+ + R L PY+ + G ++ +++ Sbjct: 142 ETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRR 201 Query: 130 SQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLT 189 G +M+ V + K+ ++ + + + +Q P++ + NI + + G+ L Sbjct: 202 GHYSGQIMVVLVT-TRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLY 260 Query: 190 EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGL 249 Q + ++ I +F+Q N +A +LY TA D+ + D + G+G GL Sbjct: 261 GQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGL 320 Query: 250 HCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ---ALDSTQFATAQGDVPELVLV 306 A ++ G+E+ EA+ +K++A ++ + A ++ + G P ++LV Sbjct: 321 SVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQPTVILV 380 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTA 364 +PPR+G+ + + I Y SCN TMA+DI+ G+ +++VQ D+FP T Sbjct: 381 DPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTH 440 Query: 365 HYEVLTLLVK 374 H E + LL K Sbjct: 441 HVETVALLSK 450 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 189/378 (50%), Gaps = 11/378 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPEQ-GFRNKAKMVV 63 AG C C I+ P+QL+ K + + + E A + P Q +RN AK+VV Sbjct: 91 AGSCDGCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVV 150 Query: 64 SGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 SG+ +P++G+ R+ D+ CPL+ V A+K IA+ + YN G L Sbjct: 151 SGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLL 210 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +Y+++ S+ G M FV + ++ L + +PQ++V+ N+ ++ G Sbjct: 211 RYLVVRISERTGTAMAVFVT-VERNYNEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVILG 269 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + + +LT Q AL E + I P+SFFQ N A +Y T R W + + DL+C Sbjct: 270 QRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYC 329 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGD 299 G+GG L A ++ GIE+ A+ A+ +A + F+A D+ + +G+ Sbjct: 330 GIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEEGE 389 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLF 357 +LV++NPPR+G + + ++ P I+Y SC T+A+D+ L G+ RVQ Sbjct: 390 RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLGYATLRVQPV 449 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFP T H E + LLVK+ Sbjct: 450 DMFPQTPHVENIALLVKK 467 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 177/393 (45%), Gaps = 22/393 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPE--QGFRNK 58 C Y C C ++ + K+ + A V + P+ + +G+RNK Sbjct: 24 CPKYK--ICGGCVFMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNK 81 Query: 59 AKMVVSGSVEK-----PLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAG--- 109 A+ + P G R + C L PA+F + + + A Sbjct: 82 AQYPYADYKYTDNTVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNA 141 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTK--LAQLRKALPWLHEQLPQLKV 167 +TPYN G L+++ + + +M+ FV D QL L ++K Sbjct: 142 ITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKS 201 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 + +N+ P ++ G+ + L + +A+ VP+ + PQSF+Q N A A +L+A A+ Sbjct: 202 VMLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVPVSLSPQSFYQVNTAQAEKLFAEAKR 261 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + DL+CG G GL A ++ G+E+ +AI AK +A G++ +F A Sbjct: 262 LAAPKKDELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFA 321 Query: 288 LDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 D+ + A A+G P++++++PPR+G D MAP I+ SCN T A+D Sbjct: 322 GDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPSTAARDAA 381 Query: 345 EL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L GF ++ ++ D FP T H E + L+ +Q Sbjct: 382 YLCENGFTLDVLRPADFFPRTKHVECVVLMSRQ 414 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 27/397 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSG--PEQGFRNK 58 C + G C C+W EQL K + + L E P+ P Q +RNK Sbjct: 83 CEHF--GTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNK 140 Query: 59 AKMVVSGSV-------------EKPLLGML--HRDGTPEDLCDCPLYPASFAPVFAALKP 103 + + ++ +G R + C L P + A+ Sbjct: 141 LEFTCAEGRWLTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDA 200 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 ++ + +T YN+ G L+ +++ + + +M+ + D L + +L P Sbjct: 201 YVLQHDMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDNP-ELLNGLMTYLQTLFP 259 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 Q+ + + + + + + + E+ + I P+SF+QTN A LY Sbjct: 260 QITSLNYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGPKSFYQTNAQQAYNLYK 319 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 AR++ + ++DL+ G G L A + G+E ++A A+ +A G+ Sbjct: 320 VAREFAGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANT 379 Query: 284 QFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 F A D T A+ P++V+ +PPR G+ + + L AP I+Y SCN T Sbjct: 380 TFVAGDMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQ 439 Query: 340 AKDIREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D+ L G+ + VQ DMFPHT H E + +L K+ Sbjct: 440 ARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 16/387 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGP-EQGFRNK 58 C + G C C W P P QL+ K +++ L E + P +QGFRNK Sbjct: 74 CPHF--GDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNK 131 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + L L R G D+ C L A+ V + +GL ++ A Sbjct: 132 MEFAFTTDDREMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDA 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQL-RKALPWLHEQLPQLKVITVNIQPV 175 RG +++++ E G +++ + + + R L + +P++ +I+ Sbjct: 192 AHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQ 251 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + G+ ++ + L E+ + L +F QTN LY + Sbjct: 252 NSQVAYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGRE 311 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA- 294 H+WDL+CGVG L A + G+E ++ A+++A G T F A D Sbjct: 312 HVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLR 371 Query: 295 -----TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PG 348 AQ +P++V+ +PPR G+ + D L AP I+Y SC+ TMA+D+ L Sbjct: 372 SRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQR 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + + + D+FPHT H E + LL + Sbjct: 432 YTLHEARPVDLFPHTPHVETVVLLSNK 458 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 155/369 (42%), Gaps = 10/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQG--FRNKAKMVVSGSVEKPLL 72 QL+ K ++ L V P G +RNKA++ V + Sbjct: 106 PLANLKYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLET 165 Query: 73 GMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R + D + + + + G++ Y+ +G +++I+ Sbjct: 166 GFYRRGSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGF 225 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ + + KL + L +LP+LK NI ++ G+ + Sbjct: 226 YSHELMVVIITNT-KKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGA 284 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + ++ I P SF+Q NP + LY A + P + D + G+G L Sbjct: 285 DEIHDQLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSI 344 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---AQGDVPELVLVNP 308 A ++ G+E+ +A+ A+++A + ++F D+ + T A G P++V V+P Sbjct: 345 ADQVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAADGLKPDVVFVDP 404 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER-VQLFDMFPHTAH 365 PR+G+ L +S M P+ +Y SCN T+A+D ++ GF I+ +Q D FP T H Sbjct: 405 PRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTH 464 Query: 366 YEVLTLLVK 374 E + + + Sbjct: 465 VESVLIFKR 473 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 167/383 (43%), Gaps = 16/383 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGF-RNK 58 C + C C W P QL K + + ++ P Q F RNK Sbjct: 77 CRHF--AECGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNK 134 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + L G+ + ++ +C L + +++ + A+ GLT ++V Sbjct: 135 MEFAFENDSPQGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVR 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ-----LRKALPWLHEQLPQLKVITVN 171 G +Y+++ E+ G M++ + + +R+ L E + Sbjct: 195 SGEGFFRYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHG 254 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + + E +Y T L E+ N + P +FFQTN A L TA D+ Q Sbjct: 255 ERRSPVQAAYAEKTLYSTGDSHLTEQLNGRTFTMAPHAFFQTNTAATEILSRTAADYAGQ 314 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 +WDL+CGVG GL A +TG+E++ EA+ A +A + + +F A D Sbjct: 315 GG--VLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVR 372 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFR 350 + + P++V+ +PPR G+ + L + APR I+Y SC+ T A+D L +R Sbjct: 373 RLLIRHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDAAALTDSYR 432 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 +E VQ DMFPH+AH E + L Sbjct: 433 LEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1I3_9ACTO Length = 396 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 223/377 (59%), Gaps = 6/377 (1%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C+ Y A +C SC I P +Q++ KTA +K+LL + W GFRNKAKMV Sbjct: 12 CSYYAAQQCLSCPQIEVPYEQQVAEKTARVKSLLPMIAEDAWLPTQESASVGFRNKAKMV 71 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 V+GS +LG+L D +DL +CPLY + +I G++PY+V +RGEL Sbjct: 72 VTGSAANAMLGILGSDYAGQDLTECPLYSQHMRDFLKTFQRWIRELGISPYSVKERRGEL 131 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 KYIL+TES DG ++R+VLRS +++LR + + E+ P++ V++ NI H+A+ EG Sbjct: 132 KYILVTESP-DGQFLVRWVLRSHRWVSRLRNFVSVMQEEFPEIAVVSANILAEHVALTEG 190 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 EI L L + V L + P+SFFQTN +A +Y A+ W L DLFC Sbjct: 191 PEEISLYG-DYLPFQLGRVKLQLLPRSFFQTNTFIAHAMYQQAQRWAIALKPDRAVDLFC 249 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD--- 299 GVGGF L A +TG+E+++ AIA AK+ A GL + F A D+T F+ ++G Sbjct: 250 GVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFSISEGGLQL 309 Query: 300 -VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFD 358 ++++VNPPRRGIG L ++++ R IIYSSCN ++AKD+ L ++ R ++FD Sbjct: 310 TRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKDMELLGSYKATRARVFD 369 Query: 359 MFPHTAHYEVLTLLVKQ 375 MFP T H EV+ LLVK+ Sbjct: 370 MFPGTDHAEVMVLLVKE 386 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 27/396 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPE--QGFRN 57 +C + RC C+ EQL KT +K+ LA E +G E +RN Sbjct: 78 ECGRFS--RCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRN 135 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE----------DLCDCPLYPASFAPVFAALKPFIAR 107 K V +K LG + +GT C L + A ++ + R Sbjct: 136 KVHFQVEERPDKIALGF-YEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNR 194 Query: 108 A----GLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 G R+ ++I+L + G +M V S + + + L P Sbjct: 195 HRGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGS-GEWPGEKAFVKELLSLRP 253 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 L + NI ++ G+ L ++ + +R + I P SF+Q NP LY Sbjct: 254 GLVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNPVQTLVLYN 313 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 + + + + D + G+G L A ++ G+E +A+A A+++AA +T Sbjct: 314 KVQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNA 373 Query: 284 QFQALDST---QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 +F AQG PE+V+++PPR G G+ + + + M ++Y SCN T+A Sbjct: 374 EFLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATLA 433 Query: 341 KDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 +D+R G+ ++ VQ DMFP TAH E + L+ + Sbjct: 434 RDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 161/397 (40%), Gaps = 30/397 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS-----GPEQGFRN 57 C + G C CQW QL+AK +K L PV+ P Q +RN Sbjct: 75 CMHF--GVCGGCQWQHIDYSAQLAAKEQLVKEKLIRLGRI-VNPPVAKILAADPNQYYRN 131 Query: 58 KAKMVVSG------------SVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALK 102 K + S H+ G D+ C L + A+ Sbjct: 132 KLEYTFSNKRWLTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVG 191 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F G + Y+ +G L+ +++ + S G +M+ V + + + + ++ ++ Sbjct: 192 QFAREHGYSFYDFRSHQGLLRNLIVRTT-STGEVMV-IVQFGENQEGPIVHIMDFIQKKF 249 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P L + + + Q + E + + I P+SFFQTN A LY Sbjct: 250 PTLTSLQYIVNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLY 309 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 T D + ++DL+ GVG A Q+ GIE+ AI A+ +A L+ Sbjct: 310 QTVADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSN 369 Query: 283 LQFQALDSTQF----ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 + F D + P++++ +PPR G+ + L +AP IIY SCN T Sbjct: 370 VSFWLGDMKDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPAT 429 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 A+DI +L + + Q DMFPHT+H E + +LVK Sbjct: 430 QARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 15/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-----FPVEEWCAPVSGPEQGFRN 57 C +Y +C CQ QL K ++N + + E +RN Sbjct: 77 CPIYS--QCGGCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRN 134 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K++ V + + G+ + + +C + V A+ + + YN A Sbjct: 135 KSQFAVGKEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSA 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ G ++ I++ G + + V D L ++ +P + + +NI Sbjct: 195 KQDGVIRNIVVRTGIKTGEIQVVLVAFKDG-FKDLEGLSRDIY-DIPGVISVALNINDKM 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + GE L + + E+ + + P++FFQ NP A ++Y + Sbjct: 253 TSRVFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEER 312 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-- 294 + D + GVG GL A ++ G+EI EA+ A + G Q+ + + Sbjct: 313 VVDAYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPR 372 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +G +P++ +V+PPR G L + + + + IIY SCN QT+A+D L G+++ Sbjct: 373 WVKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKAGYKV 432 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 +Q +DMFP TAH E + +L Sbjct: 433 SYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 11/383 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPEQGFRNK 58 M+C + C C + Q K D++ L+ V ++ + +RNK Sbjct: 1 MKCKV--EKLCGGCSLLKLKPSMQADKKKKDVEVLVEKAHLKVRVGDVHMAKNDTHYRNK 58 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + K G+ +C + P + + + L YN Sbjct: 59 VIVGFAKDKGKVYSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERT 118 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+++L+ +M+ FV S + + L + PQ+K I NI P Sbjct: 119 GTGLLRHVLIRWGHKTDEVMVVFVT-SQKMFPSRKNMVRVLTSEFPQIKTIVQNINPRKT 177 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ + I L + + + + SF+Q + LY A+ + + Sbjct: 178 SIVLQDEAIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTV 237 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---A 294 D +CGVG GL ++ G+E+ +AI AK +A + + ++F A+DST+F A Sbjct: 238 LDTYCGVGTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQA 297 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 + + ++++PPR G K + + + PR I+Y SC+ +T +D+ + G+ Sbjct: 298 RKYHNRYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGYVTN 357 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +++L D+FP+T H E + +L K+ Sbjct: 358 KLELVDLFPYTDHIESVCVLEKK 380 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 173/385 (44%), Gaps = 16/385 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGP--EQGFR 56 +C ++D C CQ QL K +++ L + + V G +R Sbjct: 75 KCNVFDL--CGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYR 132 Query: 57 NKAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP-YN 114 NK + V + K G+ T DL +C + +K ++ + N Sbjct: 133 NKNQFPVEKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKN 192 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 R++G +++I+ + + G + + FV + + + + L +L +K + +NI Sbjct: 193 PMREKG-VRHIVTRVALATGEIQVVFVTNT--RHLKKQDLLAERVMRLAGVKSVALNINT 249 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +I+ G+ I + ++ + E+ D + +SFFQ NP LY RD Sbjct: 250 EKTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQ 309 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 +++ D FCG G G+ A ++ G++ + I A +A G +F+ D+++ Sbjct: 310 ENVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASEKL 369 Query: 295 T---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 +G P+++ V+PPR G+ + ++ + P+ +Y+SCN T+AKD+ L F+ Sbjct: 370 NEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTKAFQ 429 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 +E +Q DMFP TA E + L ++ Sbjct: 430 VEYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNL8_9FIRM Length = 386 Score = 383 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 11/379 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG--PEQGFRNK 58 MQC +Y RC C + QP Q+ K A L+ L +E P+ +R+K Sbjct: 1 MQCRVYR--RCGGCSMLEQPYANQIRWKQAVLERLF----PKETVLPMLKDKNPDHYRHK 54 Query: 59 AKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + LG+ + + + DC + + L L+ Y R Sbjct: 55 IYATFGKNAQGIFLGLYGYHNHRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDR 114 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 ++G L+++ L S D +M+ VL + K +K + L E+ P+++ + +N Sbjct: 115 RKGLLRHVYLRISSKDEKVMMVLVL-GEKKFPGSKKLVKILLEKHPEIETVILNYNFRKT 173 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ GE E + + L ++ + + I SF+Q NP A +LY A + + Sbjct: 174 SIVLGEQERVVYGKGYLMDKIDGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKV 233 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D G G L A + GIE+ +A+ A ++ + +QF + Sbjct: 234 VDACSGTGTISLLLARHVQSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRY 293 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQL 356 +++ ++PPR G+G YL + I+Y SC+ T A+DI+ L + I Q Sbjct: 294 RIQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSITVSQG 353 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFP T + E + +L ++ Sbjct: 354 VDMFPQTKNIENILVLERK 372 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 8/373 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVSGPEQ--GFRNKAKMVVS 64 AG+C C + Q K L+N L E P+ + G+RN+A + V Sbjct: 78 AGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQ 137 Query: 65 GSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 G R ++ CP+ + LK + AG YN ++G L+ Sbjct: 138 ERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLR 197 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 ++L S G ++L V+R D + ++ ++ P+L + +N+QP + G Sbjct: 198 QLVLRAGVSSGEVLLGVVVR-DDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGP 256 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 E L + L E F I +FFQ + A L R ++ + + D +CG Sbjct: 257 KERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCG 316 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPEL 303 VG GL ++L GIE + E+I A+ +A GL F A + ++ Sbjct: 317 VGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTDV 376 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG---FRIERVQLFDMF 360 +L++PPR+G+ +C+ + P + Y SCN T+A+D+ L F + +V FD F Sbjct: 377 LLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQRFELTKVVPFDFF 436 Query: 361 PHTAHYEVLTLLV 373 P T H E + +L Sbjct: 437 PQTTHIEAMAILT 449 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 174/401 (43%), Gaps = 30/401 (7%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQGFRNKA 59 +C + G C C+W M P EQL AK + + L E P+ G E+ + + Sbjct: 111 KCQHF--GICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRN 168 Query: 60 KMVVSGSVEKPLLG---------------MLHRDGTPEDL---CDCPLYPASFAPVFAAL 101 K+ S ++ L H G + + C L + + Sbjct: 169 KLEFGCSNKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCI 228 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGG--MMLRFVLRSDTKLAQLRKALPWLH 159 + + ++ +++ + G L+ I++ S + G ++++F + + + L + Sbjct: 229 RDYAIDHDISFFDLRAQTGLLRDIMIR-SANTGEWMVLVQFKFQEEGDEQRAHGLLQHVA 287 Query: 160 EQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 + PQ+ + +T + + + E D+ + +SF+QTN A Sbjct: 288 DSFPQITSLLYVDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAKSFYQTNTNQAY 347 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 LY+ AR++ + + ++DL+ G G A ++ GIE +AI AK ++A Sbjct: 348 HLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAAND 407 Query: 280 LTRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 + QF A D T A+ P++++ +PPR G+ + + AP+ I+Y SCN Sbjct: 408 IHNTQFYAGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCN 467 Query: 336 AQTMAKDIREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T A+D++ L +++ VQ DMFPHT H E + LL ++ Sbjct: 468 PATQARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 155/384 (40%), Gaps = 19/384 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG-----PEQGFR 56 +C + G C C +QL K + N++ + AP++ +R Sbjct: 67 RCPHF--GYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRID--APINSVLPNFAFYRYR 122 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K S K +G R + DC + S V + + L Y Sbjct: 123 QKVHFTFGSSQNKLAIGYFDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAY--F 180 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G L+++++ +S + G + + + A L P+++ +T + P Sbjct: 181 NDAGVLRHLVVRKSSTTGEIQVV-ITAVKLNFNVKEIAAKILLN--PEIQSLTFHENPKK 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G+ + + E + + P SFFQ NP A ++Y A D++ Sbjct: 238 TREVFGKGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDM 297 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 ++D + GVG L A + G+E +A+ AK +A G+ + F A + + Sbjct: 298 VFDGYSGVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPW 357 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 +G ++++PPR G+ K + + + + P I+Y SCN T A+D++ L G+ Sbjct: 358 LLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYP 417 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 + DMF T H E + LL K+ Sbjct: 418 VEITPVDMFSQTMHVENVVLLKKK 441 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 159/381 (41%), Gaps = 14/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPE-QGFRN 57 +C + G C C W P QL K + LA P V+ PE G+RN Sbjct: 72 RCPHF--GVCGGCDWQRLDYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRN 129 Query: 58 KAKMVVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + +G + LG+ R D+ CPL V A++ GL Y+ Sbjct: 130 KMEFAFAG---RLHLGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDP 186 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL-PWLHEQLPQLKVITVNIQP 174 +G ++++L +S+ DG + + L L + P+L +++ Sbjct: 187 RTGKGVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPELTGFVHSVRR 246 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + GE + + + L E+ L + P +F QTN A LY P Sbjct: 247 APTPVAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEIVTREASSDPA 306 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ-ALDSTQF 293 DL+CG GG L+ A ++ G++I +I AK SA F+ A + Sbjct: 307 GTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVFEAADAADAL 366 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIE 352 GD P +V+++PPR G + + AP ++Y SCN T+A+D++ L + + Sbjct: 367 DDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDVT 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 V D+FPHTAH E + L Sbjct: 427 SVTPVDLFPHTAHIEAVASLT 447 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 13/377 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE--QGFRNKAK 60 C + GRC C W+ QL K L +L ++ V + +R K + Sbjct: 68 CRYF--GRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKME 125 Query: 61 MVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 G LG+ R+ D+ DC + P + +K + + YN ++ Sbjct: 126 FHFQGRK----LGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRK 181 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G LK++++ + S M+ FV ++++ R + + ++ P++ I + + Sbjct: 182 GVLKHLVIRYAFSTDQFMVIFVTKTES-FPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVV 240 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G + L + + E F+ I P +FFQ+N ++ S+L + + D Sbjct: 241 LRGPYK-TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLD 299 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 L+ G+G F + + ++ +E + A+ K +A +++ D F Sbjct: 300 LYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSG 359 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 + ++++PPR G G + ++ ++P I+Y SC+ T+ +D++ L G+ I RV+ F Sbjct: 360 RADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPF 419 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T H E LVK Sbjct: 420 DMFPQTYHVETAVTLVK 436 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 176/386 (45%), Gaps = 19/386 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGF 55 QC ++D+ C CQ + P+QL K ++ L F + + G + Sbjct: 73 QCPIFDS--CGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHY 130 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 R K + S ++ L+ +G+ + +C + S + + + + + Y Sbjct: 131 RAKLQFQTR-SFSGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIY 189 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 N + G L+ I++ ++ + + + F+ + LA + + + + P++K + +NI Sbjct: 190 NERKIEG-LRTIMIRKAIASQTLQIIFITSKEVHLAPI---ILDMTKTYPEIKTVALNIN 245 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + + G+ + Q + E D + P++F+Q NP S LYA + + Sbjct: 246 RSKSSELYGDKTEIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSE 305 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 H+ D +CGVG G A + G++I EAI AK++A ++G ++ + Sbjct: 306 SDHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDI 365 Query: 294 ATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-F 349 G + ++V+PPR G+ K L + + T P ++Y SCN T+A+D+ EL + Sbjct: 366 IPKWYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKVY 425 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ +Q DMFPHTA E + L ++ Sbjct: 426 TVDYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 156/382 (40%), Gaps = 18/382 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPE--QGFRNK 58 C + C CQ QL K + N + + P G E +RNK Sbjct: 77 CPFFQ--ECGGCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNK 134 Query: 59 AKMVVSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V KP LG+ + ++ C + V ++ + YN Sbjct: 135 FQIPVKPIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCE- 193 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 LK+I+ + L FV S+ K+ + L L + L I NI Sbjct: 194 ----LKHIISRVGDKTDQVQLTFVTGSE-KIDNKQMILEPLKNGMANLVGIVQNINKKPR 248 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + G+ L ++ L + D + +F+Q NP+ LY + + V+++ Sbjct: 249 GNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENV 308 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA- 296 D++CG+G L A ++ GIEIA EA+ A + G F + T Sbjct: 309 MDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAEDEKTES 368 Query: 297 --QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 Q PE+V+++PPR+G + L L + P I Y SCN T+A+D+ +L G+ E Sbjct: 369 IIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPE 428 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 Q DMFP T H EV+ +L K Sbjct: 429 LFQPVDMFPQTTHIEVICILTK 450 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 18/388 (4%) Query: 1 MQ-CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE---QGFR 56 MQ C+++ +C C + EQL K ++ +L + ++ P +R Sbjct: 1 MQICSVFK--KCGGCSKLHINYEEQLKIKEKNVLSLFDQYQIKPNNYHGITPSVDIYEYR 58 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL+ L G D+ DC L F + + F + + Sbjct: 59 NKMEYSFGNEYKDGPLVLGLRGKGKKFDVYYTKDCKLVDYDFNNIVIKTREFFLKKNIPF 118 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW--LHEQLP-QLKVIT 169 N G L+ + + + G ++L V D Q + L+ L + I Sbjct: 119 RNYKNHSGFLRNLGIRKGLKTGEILLNLVTSLDNTYYQEVETWKEEMLNTNLKGNIVSII 178 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 + +++ + L + E+ D+ I P SFFQTN LY TA + Sbjct: 179 QSKTESKANVVKADEMEILYGRDYFYEKILDLTFKIGPFSFFQTNTKGTEVLYQTALSYA 238 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 ++D + G G L A ++ GIEI EA+ AKQ+A + ++F D Sbjct: 239 E--NSDVVYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKD 296 Query: 290 STQFATAQG--DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 F Q + P+ ++V+PPR G+ L ++ T IIY SCN +T+ +++EL Sbjct: 297 VKDFVKQQSSTEKPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNLKELS 356 Query: 348 G-FRIERVQLFDMFPHTAHYEVLTLLVK 374 + I L DMFPHT H E + L+ + Sbjct: 357 DLYTISDFHLVDMFPHTDHVESVVLMTR 384 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 376 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 163/379 (43%), Gaps = 11/379 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C + RC C + + K L L D E+ S QG+RNK + Sbjct: 69 CPV--NERCGGCIYQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRNKMEYT 126 Query: 63 VSGS-VEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 S PL+ LH D DC + F + A++ + + + Sbjct: 127 FGDSVKGGPLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKH 186 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L++ ++ +S SD M+ V SD + + + + ++ I I Sbjct: 187 TGLLRHFIIRKSFSDDEYMINLVTTSDKF--DVNDFVEFAKQIDNRIVSIYHTINDNISD 244 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + + L ++ L E+ N + I P SFFQ NPA A Q+Y A + L K+++ Sbjct: 245 AVIVDKLELLHGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVY 304 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DL+CG G A + G+EI EA+ AK++A GLT +F D F + Sbjct: 305 DLYCGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFME-KV 363 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 + ++V+++PPR GI D L + P IY SCN T D+ + G+ I+ ++ Sbjct: 364 EKKDVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLEF 423 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 FD FP T H E + LL ++ Sbjct: 424 FDQFPRTYHCEAVVLLSRK 442 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 168/424 (39%), Gaps = 55/424 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-----WCAPVSGPEQ-GFR 56 C AG C C + P QL K +K L+ D +E + P Q G+R Sbjct: 73 CVH--AGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYR 130 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL +H+ G+ D+ +C + F + + + +T Sbjct: 131 NKMEFSFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITY 190 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQL----------------RKALP 156 Y+ R G L+++L+ ++ G +++ V + T + A Sbjct: 191 YHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFA 250 Query: 157 WLHEQLPQ--------------LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVP 202 E+L + + I + E L Q E + Sbjct: 251 GTEEELLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEELLGLR 310 Query: 203 LWIRPQSFFQTNPAVASQLYATARDWVRQ-----------LPVKHMWDLFCGVGGFGLHC 251 I P SFFQTN A LY TAR+++ K ++DL+ G G Sbjct: 311 FKITPFSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQML 370 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 + ++ G+EI EA+ AK++A GL +F A D + + + P+ ++++PPR Sbjct: 371 SPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSIEEKPDYIVLDPPRD 430 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVL 369 GI + + ++Y SC ++A+D+ L G+ +++V DMFP T H E + Sbjct: 431 GINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMFPSTFHVESV 490 Query: 370 TLLV 373 L+ Sbjct: 491 VLMQ 494 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 186/378 (49%), Gaps = 11/378 (2%) Query: 7 DAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNKAKMV 62 ++ C C I +Q K + L + + P+ P + +R ++ Sbjct: 108 ESAHCLGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTTVRLT 167 Query: 63 VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 ++G +P +G+ R DLCDCP++ V ++ I+R + Y+ + G Sbjct: 168 IAGKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRNRVGL 227 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+Y+++ S+++ M+ FV ++ ++ EQLP+++V+ N+ ++ Sbjct: 228 LRYLVVRVSEAEQKAMVVFVTA-RRSYNEIHHLARYVREQLPEVEVVAQNVNSSEGNVIM 286 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + +LT + L ER +V L I P+SF Q N A +Y +W R + + DL+ Sbjct: 287 GPVDHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETVLDLY 346 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---QFATAQG 298 CG+GG L A ++ G+E+ A+ A+++A G++ FQA D + G Sbjct: 347 CGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAEQLEELAEDG 406 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 + ++V++NPPR+G + + ++ + PR ++Y SC+ QT+A+D+ L G+ VQ Sbjct: 407 EGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSLGYVCVEVQP 466 Query: 357 FDMFPHTAHYEVLTLLVK 374 DMFPHT H E + L K Sbjct: 467 VDMFPHTMHVENVARLEK 484 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 167/401 (41%), Gaps = 32/401 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNK 58 C + G C C+W P EQL AK + + L+ + P+ G + +RNK Sbjct: 105 CQHF--GVCGGCKWQNLPYEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNK 162 Query: 59 AKMVVSGSV-------------EKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALK 102 + S + H G + + C L + ++ Sbjct: 163 LEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIR 222 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGG--MMLRFVLRSDTKLAQLRKALPWLHE 160 + G++ +++ ++ G L+ +++ S G ++++F + T L + E Sbjct: 223 DYALTKGISFFDLRQQTGLLRDVMIRNSD-TGEWMVLVQFHFETATDQQTAEALLAHVGE 281 Query: 161 QLPQLKVITVNIQPVHMAIMEGETEIYLT-EQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 PQ+ + + G+ +++ + E D+ + P+SF+QTN A Sbjct: 282 HFPQITSLLW-VDNQKCNDTFGDLPVHVFKGNGHIFEVMEDLRFKVGPKSFYQTNTQQAY 340 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 LY AR + + ++DL+ G G A ++ G+E EAI AK ++ G Sbjct: 341 HLYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNG 400 Query: 280 LTRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 ++ F A D A P++++ +PPR G+ + + + P+ I+Y SCN Sbjct: 401 ISNTTFYAGDMKDILNDEFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCN 460 Query: 336 AQTMAKDIREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T A+D+ L + + VQ DMFPHT H E + LL ++ Sbjct: 461 PATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 501 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 175/384 (45%), Gaps = 19/384 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE--QGFRNK 58 M+C + A +C SCQ+I Q + L K + K + D V PVSG E +RNK Sbjct: 1 MKCDI--AKKCGSCQFINQGYVKSLEYKNEECKKIFKDLKVN--VHPVSGMEDPYYYRNK 56 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + +K L+ + + + C ++ + + + + ++ Y+ Sbjct: 57 TIIAF----DKTYNYGLYEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQ 112 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R+RGE+++IL+ + ++ V + + L + P +K I +N Sbjct: 113 RRRGEIRHILIRRAVKTNQTLVVIVSN-EAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQ 171 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +I+ GE E L + + + + I P+SF+Q N LY+ A + K Sbjct: 172 TSIVLGEQEKVLFGKGFIVDELCGMTFKISPRSFYQINHDQCEALYSKALSLITVKDPK- 230 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF--- 293 + D +CG+G GL + Q+ G+E+ +A+ AK + + ++F D+T+F Sbjct: 231 IMDTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVE 290 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 A Q ++++++PPR G + ++ P+ I+Y SC+ T +D++ G+ Sbjct: 291 AAKQKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDF 350 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 + V +DMFP T+H E + LL + Sbjct: 351 KDVYPYDMFPFTSHVETVVLLSHK 374 >UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8Q1_ATOPD Length = 415 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 172/410 (41%), Gaps = 42/410 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQG--FRNK 58 C++ A RC C+W+ P P QL K A ++ LLA P+ G ++ +R+K Sbjct: 8 CSI--ARRCGGCEWLSVPYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHK 65 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A + + + + GT + + +C + + + + + Y Sbjct: 66 AATPFAPGKGRTVRSGFYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQED 125 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R +G L++ ++ + +ML V+ +L ++ + L + P+L I +N+ Sbjct: 126 RGKGALRHAVVRCGYATDDVMLVLVVNGQ-RLPHEQEFIAALRKAHPELTSIFLNVNQKR 184 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV------- 229 + G L +++++ + I P SF+QTNP LY A D Sbjct: 185 TNAILGRETRLLWGSTSMSDKLLNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQT 244 Query: 230 --------------RQLPVKHMWDLFCGVGGFGLHCATPDMQ------LTGIEIASEAIA 269 + D +CG G GL A LTG++ I Sbjct: 245 GATLTEASTQTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQ 304 Query: 270 CAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 A+++A L +F D+T++ A G ++++++PPR G + +A Sbjct: 305 MARRNARNNKLE-AEFICDDATRYMQALAKDGQNFDVIILDPPRAGSTPAFLKATAQLAQ 363 Query: 327 RFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + I+Y SCN T A+D++ L GF IERV DMFPHT H E + +L + Sbjct: 364 KKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 158/363 (43%), Gaps = 10/363 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQ--GFRNKAKMVV 63 A +C CQW QL K + L + + P+ Q G+RNKA + Sbjct: 76 ADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPL 135 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S + ++ + +L CP+ + A +K I + G + YN +G Sbjct: 136 GYSKFGNVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGH 195 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L Q+ G ++L + + +A WL E+ P L + VN + Sbjct: 196 LRHLALRIGQNSGEVLLTLISTTGNITKIKEQAKLWL-ERYPNLVGVLVNKNSEKNNKIF 254 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + + L ERF ++ +RP +FFQ N A L + D + + + D + Sbjct: 255 GNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAY 314 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG+G F L A GIEI+ ++I AK +A + ++F P Sbjct: 315 CGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLNIFP 374 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 ++VL++PPR+G + + L + P IIY SC T+A+D++++ ++I VQ D Sbjct: 375 DIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKICYQNLYKILWVQPVD 434 Query: 359 MFP 361 FP Sbjct: 435 FFP 437 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 106/418 (25%), Positives = 159/418 (38%), Gaps = 51/418 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--------VEEWCAPVSGPE-- 52 C A C C+ QL AK + L+ +E P+ + Sbjct: 139 CEY--ASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQ 196 Query: 53 QGFRNKAKMVVS-------------GSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAP 96 +RNK + K LH G ++ C L Sbjct: 197 FHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNL 256 Query: 97 VFAALKPFIA--RAGLTPYNVARKRGELKYILLTESQS--DG--GMMLRFVLRSDTKLAQ 150 V AA++ L+PY+ G LK+++L ++ G +M+ FV S + Sbjct: 257 VLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYK--PE 314 Query: 151 LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSF 210 L K L +PQ+ I N+ GE E L + + E + I SF Sbjct: 315 LLKPLVDRISSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSF 374 Query: 211 FQTNPAVASQLYATARDWVRQLPV--KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAI 268 FQTN A LY + + + DLFCG G GL A + G E+ +AI Sbjct: 375 FQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAI 434 Query: 269 ACAKQSAAELGLTRLQFQALDSTQFATAQGDV---PELVLVNPPRRGIGKPLCDYLSTMA 325 A ++A G+ F D + G+ P++V+ +P R G+ L +L + Sbjct: 435 TDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLK 494 Query: 326 PRFIIYSSCNAQTMAKDI---------RELPG-FRIERVQLFDMFPHTAHYEVLTLLV 373 IIY SCN T A+D+ + L G +++ VQ DMFPHT H E + LL Sbjct: 495 SPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLE 552 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 109/389 (28%), Positives = 169/389 (43%), Gaps = 20/389 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP-------VSGPEQGF 55 C + G C C P Q K + L P S E G+ Sbjct: 78 CEYF--GSCGGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGY 135 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 RNK + G + LG R ++ CPL P A + A ++ + A + Y Sbjct: 136 RNKMEFSFHGIGDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAY 195 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 R G + +++ S G MM+ + ++ L + +PQLK + + Sbjct: 196 RHNRG-GYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTR 254 Query: 174 PVHMAIMEGETEIYLTEQQALAERF-----NDVPLWIRPQSFFQTNPAVASQLYATARDW 228 + GE I +T Q+ + E ++V I P +FFQTN A LY + + Sbjct: 255 KGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSEL 314 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 +WDLFCG GG G+ A ++ GIE++ E++ AK +AA GL Q+ Sbjct: 315 AAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVG 374 Query: 289 DS--TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + + P++V+V+PPR G+ P L + P I+Y SCN T+A+D ++ Sbjct: 375 NLASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKM 434 Query: 347 PG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 G +++ER DMFPHTAH E + LL K Sbjct: 435 EGRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 169/380 (44%), Gaps = 9/380 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C Y C C + P +L K +K L D EE S + +RNK + Sbjct: 73 CPNYI--ECGGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYT 130 Query: 63 VSGSVEK-PLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + + P++ +H+ D +C L F + A+ F+ L Sbjct: 131 FADMYKDSPIMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTH 190 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-PQLKVITVNIQPVHM 177 G L+++++ + + G +M+ V + ++ L +L +K I Sbjct: 191 EGLLRHLIIRYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLA 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + E + ++ + E+ D+ + P SFFQ N A LY+ A + + K + Sbjct: 251 DAVVPEKINIIFGKEYITEKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 +DL+ G G G A + GIEI EA+ A +SA E GLT F A D + + Sbjct: 311 FDLYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIENR 370 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 ++ ++++V+PPR GI + + + + + I+Y SCN +T +DI+ L G+++ ++ Sbjct: 371 KEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQNGYKLITLK 430 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 +F+ FP T H E + LL ++ Sbjct: 431 IFNQFPRTVHCEAVALLERR 450 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 103/406 (25%), Positives = 172/406 (42%), Gaps = 38/406 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQ--GFRNK 58 C + C C+W P QL AK + + L E P+ G EQ +RNK Sbjct: 63 CTHFT--VCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNK 120 Query: 59 AKMVVS----------------GSVEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFA 99 + S S E H G + D+ +C L + Sbjct: 121 LEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRL 180 Query: 100 ALKPFIAR--AGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW 157 ++ + + +++ + G ++ +++ + S G +M+ V D A+ L Sbjct: 181 FIREYCMQDPERYPFFDLRNQEGLMRTLMIRTT-STGELMVVVVFFRDDVAAR-EALLAA 238 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLT-EQQALAERFNDVPLWIRPQSFFQTNPA 216 + E+ PQ+ + I + G+ E+ L ++ + E + I +SF+QTN Sbjct: 239 VAERFPQITSLLYVINTKCNDTI-GDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSR 297 Query: 217 VASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA 276 A QLY AR++ + ++DL+ G G A ++ GIE EAI A+ ++ Sbjct: 298 QAYQLYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSL 357 Query: 277 ELGLTRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYS 332 G+ F A D T Q P++V+ +PPR G+ + + D + APR I+Y Sbjct: 358 LNGIENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYV 417 Query: 333 SCNAQTMAKDIRELPG---FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 SCN T A+D+ L +R + + DMFPHT H E + LLV+ Sbjct: 418 SCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVRN 463 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 171/386 (44%), Gaps = 18/386 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD---FPVEEWCAPVSGP-EQGFRNK 58 C Y+ C CQ QL K+ +++ L F + E + + P + G+RNK Sbjct: 66 CRWYET--CGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNK 123 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A V + G + GT + CPL A ++ L+ + G + Y+ Sbjct: 124 ASFPVRRTASGETTGFF-KMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEK 182 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVITVNIQ 173 RG L++I++ S G++ V+ S +A LR +L + P L + ++I Sbjct: 183 TGRGWLRHIVVRASTYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLALSIN 242 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 P + G+ + + + E L SFFQ N A A++L+ A V Sbjct: 243 PSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVPD-- 300 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 +L+CGVG A +T EI A+ A+++ + LT ++ + + + Sbjct: 301 GSRTLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKL 360 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 + + + ++V+PPR G + L+ + + I+Y SCN T+A+D L G+++ Sbjct: 361 PSDLFEGQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAGYQL 420 Query: 352 E--RVQLFDMFPHTAHYEVLTLLVKQ 375 V+ FDMFP T+H E + LL ++ Sbjct: 421 VTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 170/386 (44%), Gaps = 17/386 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD----FPVEEWCAPVSGPEQGFRN 57 +C++Y +C SCQ + + Q K + L PVE+ +G +RN Sbjct: 71 KCSIY--AKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVL--CAGNPYHYRN 126 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + +K + + + + + C L+P + ++ I + + Y+ Sbjct: 127 KMIIGFQKGRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDE 186 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R+ G L+++L+ + +M+ + S RK + L + P + I N+ P Sbjct: 187 DRRTGLLRHVLIRYGKVTKQIMVV-FVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPR 245 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 +I+ G E L + + + + I +SF+Q N LY A D + + Sbjct: 246 KTSIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNE 305 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF-- 293 + D +CG+G G+ A+ Q+ G+E+ +A+ A Q+A + ++F D+ F Sbjct: 306 VVLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMS 365 Query: 294 -ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 ++++++PPR G + + + I+Y SCN T +DIR L G+R Sbjct: 366 QLAKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLGYR 425 Query: 351 IE-RVQLFDMFPHTAHYEVLTLLVKQ 375 +E + L DMFP T E + +LV++ Sbjct: 426 VEGSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 161/383 (42%), Gaps = 14/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGPEQ-GFRNKAK 60 C C C + +QL K + N++ ++ + P G+RN+ Sbjct: 95 CKH--NKECGGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPINIGYRNRMD 152 Query: 61 MVVS-GSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 G + PL LH+ D+ DC + F + + + + YN Sbjct: 153 YTFGDGYIGGPLECGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKI 212 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDT--KLAQLRKALPWLHEQLPQLKVITVNIQP 174 + G L+ +L+ +++ +M + S L +L+ L L + L I I Sbjct: 213 KHTGYLRNLLIRKAKKTNEIMYCLITSSQLTIDLNELKNKLLEL-PLMGNLVSIIHCIFD 271 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 I+ L + E + I P SFFQTN A LY T R+++ Sbjct: 272 DITDIVGYNKMEILYGNDYITEELLGLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKC 331 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS-TQF 293 ++DL+CG G + ++ G+E+ +AI AK +A LT +F+ D + Sbjct: 332 DIIFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVNNEL 391 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 Q + PEL++++PPR GI + + IIY SC T+ +D+ L G+++ Sbjct: 392 DQLQENRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLIILEQNGYKV 451 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + L DMFP+T H E + LL K Sbjct: 452 KNITLVDMFPNTPHIETVCLLKK 474 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 170/384 (44%), Gaps = 14/384 (3%) Query: 1 MQCALYDAGR-CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA-PVSGPE-QGFRN 57 +QC + A C C W+M EQL K L L + F ++ P P+ + +RN Sbjct: 67 VQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRN 126 Query: 58 KAKMVVSGSV--EKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 K M V + K GM R + C +P F + +L F +A + PYN Sbjct: 127 KVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYN 186 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 +G+L++I + +++ V S KL + L + PQ+K I NI Sbjct: 187 EIEHKGQLRHIGFRCNSDGRQILVILVTLS-GKLPFTNLLVKKLTTEFPQIKGIIQNINR 245 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ G+ L + L + + I +SF+Q N + + +D+V Sbjct: 246 QKENVILGKETKLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVNSNN- 304 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + D +CG+G GL A ++ +E +AI AK++A GL + F Sbjct: 305 -VILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNL 363 Query: 295 TA--QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGF 349 +A + P+ ++++PPR G+ + + + + IIY SC T+A+D+ L + Sbjct: 364 SAVLIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKY 423 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q FDMFP+T H E L +L Sbjct: 424 KVVFLQPFDMFPNTWHIECLAVLK 447 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 150/381 (39%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C + G C C + Q+ K + LL V+ +S +RNK + Sbjct: 73 CPSF--GFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFS 130 Query: 63 VSGSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + LG+ + + C + F V +K F + YN G Sbjct: 131 FFNNKGIADLGLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEG 190 Query: 121 ELKYILLTESQSDGGMMLRFVLRS-DTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 ++++L ++ ++ ++ + D + L + L E I Sbjct: 191 FFRHLVLRKAGNNNQFLINVITNVVDCESVFLEPLIKELSEF---SCSIYWTSNGRKSDA 247 Query: 180 MEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + + + + ER N D I P SFFQTN LY + Sbjct: 248 VLADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYT 307 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DL+CG G G+ A ++ G+E +AI AK++A + +F A D+ + Sbjct: 308 VLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIK 367 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIE 352 + V+V+PPR G+ K + +L + IIY SCN T+A+D++ + +I+ Sbjct: 368 ENKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCKIK 427 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 + DMFP T H E + LL Sbjct: 428 EIIPVDMFPQTYHIETVVLLE 448 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 23/390 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKM 61 C Y C C + +QL K +++ F E + P +Q +R+K ++ Sbjct: 9 CQHYP--ECAGCDRLHIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQL 66 Query: 62 VVSGSVEKP----LLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 LG+ +++ T D +C + V AA++ + L PY+ Sbjct: 67 PFGHRKIGKKSVLTLGLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEK 126 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ----------LK 166 + G L++I+L ++ + +++ V ++++ +K L+ + Q + Sbjct: 127 KGSGLLRHIVLRKANATQEILVGIVTN-ESEIPGRKKLTDRLYSYIQQFLYKENSKADVV 185 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I N+ + ++ GE E+ + + E+ + I +FFQ NP LY Sbjct: 186 GILQNVNRKNTKVVLGEKEVTWYGRHFVKEKIGKLDFQIGLSTFFQVNPFQIENLYNLIL 245 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + K + D +CG+G L+ A+ ++ G+E S +I A ++ G+ + F Sbjct: 246 E--DLPENKCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFI 303 Query: 287 ALDSTQ-FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 A + ++V+++PPR G+ L I+Y SCN +T+ +D E Sbjct: 304 KGKVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIE 363 Query: 346 L-PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L F+ E++ D+FPHT+H E +++ K Sbjct: 364 LTKSFKYEKITPVDLFPHTSHLESVSVFTK 393 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 167/373 (44%), Gaps = 11/373 (2%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPE-QGFRNKAKMVVSGSVE 68 C + M QL K ++ ++ E ++ + +RNK S Sbjct: 92 GCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYAN 151 Query: 69 KPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 K + G R ++ + L + LK + + ++ Y+ +G L+ I++ Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMI 211 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 + S+ M+ ++ S+ ++K L L E + ++K I +++ + GE I Sbjct: 212 R-TNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIGEKNIL 270 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 + ++++ E N + I P SFFQ N A +LY A + + K++ D + G G Sbjct: 271 IYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTI 330 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELV 304 G+ A ++ IEI A +++A E G+ ++F + + + Sbjct: 331 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNNQKIDTI 390 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 + +PPR+G+ + D ++ + + ++Y SCN T A+D++ G+ ++++Q DMFP Sbjct: 391 IFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAVDMFPQ 450 Query: 363 TAHYEVLTLLVKQ 375 T+H E + L+ ++ Sbjct: 451 TSHIECVGLIERK 463 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 176/419 (42%), Gaps = 51/419 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL-----ADFPVEEWCAPVSGPEQGFRN 57 C Y G C C + P EQL K+ +K +L D+ EE S E RN Sbjct: 74 CKNY--GLCGGCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILG--SPNEWETRN 129 Query: 58 KAKMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPY 113 K + S P+ LH+ G D+ DC + F V + A ++ Y Sbjct: 130 KMEYAFGDSYKGGPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFY 189 Query: 114 NVARKRGELKYILLTESQSDGGMML------RFVLRSDTKLAQL---------------- 151 N A RG L+++L+ + G +++ F+ +S+ ++ Sbjct: 190 NKAMHRGYLRHLLVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDK 249 Query: 152 --------RKALPWLHEQL------PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAER 197 + L + E+L ++ I I ++ E + L + + E Sbjct: 250 DKEQSQAEKNILAKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEE 309 Query: 198 FNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 257 + I SFFQTN A LY+ R++V ++DL+ G G G + + Sbjct: 310 LLGLKFKITTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKK 369 Query: 258 LTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPL 317 + GIEI EA+ A ++A GLT +F A D + + P+ ++++PPR G+ Sbjct: 370 VIGIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLDEVKEKPDFIILDPPRDGVSPKA 429 Query: 318 CDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + + R I+Y +C ++ +DI E G+R+++V L DMFP T H E + LL K Sbjct: 430 LKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLLSK 488 >UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EB67_9ACTN Length = 482 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 166/401 (41%), Gaps = 31/401 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGP--------- 51 C++ A C C + +P +QL+AK A ++ L A E A P+ G Sbjct: 85 CSIMKA--CGGCTALNRPYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGK 142 Query: 52 ---EQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIA 106 +GFR+KA + E + GT + + +CP+ + + Sbjct: 143 YPAPRGFRHKAATPFAPGKEGAVRCGFFERGTHKIVAVPECPVEAPGARQILNGIAREAE 202 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 R + +N + G L+Y ++ +M+ V L ++ + P + Sbjct: 203 RLHIPAFNEDKHLGLLRYAVVRCGWRTDQVMVTLVTA-QRDLPHAQEFFEAVAALNPHIV 261 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 + NI + GE + + + ++ I P +F+QTNP LY A Sbjct: 262 TVAQNINGRPGNAILGEETRIVYGAECMRDQLLGCEFDISPTAFYQTNPQQTELLYQLAI 321 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ------LTGIEIASEAIACAKQSAAELGL 280 D + + D +CG G GL A L G+E IA A+++A GL Sbjct: 322 DGMDLQQGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGL 381 Query: 281 TR-LQFQALDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 TR F A D+T + A + +++ ++PPR G + + PR I Y SCN Sbjct: 382 TRSAWFMADDATDYILDAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRITYISCNP 441 Query: 337 QTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T +D+ +L G+R+ ++ DMFPHT H E + +L ++ Sbjct: 442 VTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 175/393 (44%), Gaps = 25/393 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---APVSGPE-QGFRNK 58 CA + G C C PEQL+ K A + L + AP P+ G+RNK Sbjct: 73 CAHF--GTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLH-------RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 + + LG+ R G D+ C L A + A++ F A G+ Sbjct: 131 MEFAFEQREDGLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVP 190 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWL-HEQLPQLKVITV 170 YN A + G +++++ + + G +M+ + D + L K + L ++ P+L Sbjct: 191 AYNPATESGFWRHLVIRHAAA-GEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVH 249 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERF----NDVPLWIRPQSFFQTNPAVASQLYATAR 226 + + + GE +Y + ER +V + P +FFQTN AS+L+ T Sbjct: 250 STRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVA 309 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 ++ + DL+CG G G++ A ++ G E + EA+ A++SA GLT F Sbjct: 310 EFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFV 369 Query: 287 ALDSTQFATAQGDVPE-----LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 + Q + +V+V+PPR G+ + + L + I+ SC+ T+A+ Sbjct: 370 SGSLEQGIPGFAGSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVSCDPATLAR 429 Query: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLLV 373 D++ L + + RV+ DMFPHT H E + LL Sbjct: 430 DVKRLADRYHVTRVRAVDMFPHTHHIETVALLE 462 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 168/392 (42%), Gaps = 34/392 (8%) Query: 17 IMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQ--GFRNKAKMVVSGSVEKP 70 + P QL K ++ L + W G E G+RNK + V + Sbjct: 86 MHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDGT 145 Query: 71 LLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 ++ L+++GT +L +C + + + I + L Y+ RK G ++ +++ Sbjct: 146 VIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDE-RKIGGIRTVMVR 204 Query: 129 ESQSDGGMMLRFVLRSD--------------------TKLAQLRKALPWLHEQLPQLKVI 168 SQ G + + FV + + K L L E+ ++ + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 169 TVNIQPVHMAIMEGETEIYLT-EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 VN P + + GE L E++ + E D + P++F+Q N A+ LY A Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + D +CGVG G A + G++I E+I A+++A LGL ++ Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 288 LDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + + G ++V+PPR G+ L + ++ P ++Y SCN T+AKD+ Sbjct: 385 GKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYVSCNVSTLAKDLV 444 Query: 345 ELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L +++E +Q DMFPHTA E + L K+ Sbjct: 445 VLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 32/385 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE--QGFRNK 58 C + G C CQ + QL K ++N+L E P+ G E +RNK Sbjct: 71 CPSF--GSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNK 128 Query: 59 AKMVVSGSVEKPLLGML----HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 ++ V+ KP+LG+ H G D C + + L I + Sbjct: 129 VRLHVAWEGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKH------ 182 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 A L + L + + G M+ S+ ++ ++ + L +P V+ Sbjct: 183 -AEMLAGLTAVSLRLAAATGETMVVLEGASE-HYSRWKRLVDELTAAVPVTTVV------ 234 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + E L + + + + + + SF+Q NP S+LY ++ Sbjct: 235 ---RVGARGKEEVLYGEGHITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGR 291 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF- 293 + + D +CGVG L A Q+ GIEI+ EA+A A +AA+ GL+ + F + + Sbjct: 292 ERVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVL 351 Query: 294 --ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 A+ + +LV+++PPR+G+ + + L +IY SCN T+A+D+ L G+ Sbjct: 352 PELLAREGMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGY 411 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 R++ VQ DMFPHT H E + L + Sbjct: 412 RVQEVQPVDMFPHTYHVECVAYLCR 436 >UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D8B Length = 401 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 15/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 + C ++AG CRSC +I P +Q++ K A +LA + W G ++ FRN+AK Sbjct: 16 LDCHYFNAGLCRSCTFIETPHRDQVADKEAWCVEVLAGHSPDAWLPAAVGLDRDFRNRAK 75 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + V GS LG+L +D DL +C + V + F+ GL PY+V +RG Sbjct: 76 LAVGGSAGSVTLGILDQDFHGVDLRECGIQAPQIRAVIPTIAHFLNGTGLAPYDVKARRG 135 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++ +T + S G +M RFV+RS L LR L LP VI+VN+ P H A++ Sbjct: 136 ELKFVHITAAPS-GDLMTRFVVRSQHGLDVLRSRGQELRALLPTATVISVNLLPEHKAVL 194 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG E L +L + V L +RPQSFFQTN VA LY WV ++ +WDL Sbjct: 195 EGSREEMLLG-DSLRMNLDRVDLHLRPQSFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDL 253 Query: 241 FCGVGGFGLHCATPD-----MQLTGIEIASEAIACAKQSAAELGLT-----RLQFQALDS 290 +CGVGGF L+CA ++TG+E++ +AI AK SA ELG ++F A D+ Sbjct: 254 YCGVGGFALYCAGTTGQQSPRRVTGVELSEQAIESAKISAVELGFDSQSGATVEFIADDA 313 Query: 291 TQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 T+FA A G+ P+ V+VNPPRRGIG L L I+YSSCN T+AKD+ ++P Sbjct: 314 TEFAEANLASGERPDCVIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMP 373 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + +ER ++FDMFPHT H EV +L ++ Sbjct: 374 SYTVERARVFDMFPHTKHLEVAVVLQRR 401 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 26/396 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVE-----EWCAPVSGPEQ-GF 55 C + G C C + P +QL K +K L++D E E+ P++ + Sbjct: 72 CPHF--GMCGGCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEY 129 Query: 56 RNKAKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLT 111 RNK + + PL +H+ G+ DL DC + F + A + ++ + Sbjct: 130 RNKMEFSFGDEYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIP 189 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL------PQL 165 ++ A +G L+++L+ ++ G +++ V + T+ + L L + Sbjct: 190 YFHRATHKGYLRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRF 249 Query: 166 KVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 K + +++ E L E+ + I P SFFQTN A LY TA Sbjct: 250 KGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLLGLKFKITPFSFFQTNSLGAEVLYETA 309 Query: 226 RDWV-----RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 R+++ L K ++DL+ G G A ++ G+EI EA+ AK++AA GL Sbjct: 310 REFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGL 369 Query: 281 TRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 +F A D + + P+ ++++PPR GI + ++Y SC ++A Sbjct: 370 DNCKFIAGDVLKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVYISCKPTSLA 429 Query: 341 KDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +D++ G+R+E++ DMFP+T H E + L+ K Sbjct: 430 RDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSK 465 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 167/384 (43%), Gaps = 17/384 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQ--GFR 56 C +Y+ C CQ + +QL KT L L F + P G ++ +R Sbjct: 73 CTIYN--ECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYR 130 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + + G+ ++ +L DC + + L + + + Sbjct: 131 AKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDE 190 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + G ++ I++ ++ G + + V L QL + L + P++ + VN Sbjct: 191 RKVLG-VRTIMVRRARKTGQVQIIIVTNRQLNLTQL---VKELVKDFPEVVTVAVNTNTA 246 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + GE + Q+++ E + + P++F+Q NP LY+ A + Sbjct: 247 KTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKED 306 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 H+ D +CGVG G A L G++I EAI AK++A +G ++A + + Sbjct: 307 HLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIP 366 Query: 296 ---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRI 351 +G + ++V+PPR G+ L D + T P ++Y SCN T+A+D+ L + + Sbjct: 367 RWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDL 426 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 +Q DMFPHTA E + L+K+ Sbjct: 427 HYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 363 bits (932), Expect = 7e-99, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 12/375 (3%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFRNKAKMVVSG 65 + QL+ K + L F + W G +RNKA+ V Sbjct: 124 GGFELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRK 183 Query: 66 SVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + +GM R DL + V ++ + + ++ YN + RG +K Sbjct: 184 IDDVLSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKT 243 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 I+ S + G + L FV +D + +++ LP++ I N P +++ GE Sbjct: 244 IVARVSHTTGDVQLTFVTNTDG-FPGDVALIAAINQALPEVNGIFQNFNPGRTSLVWGEE 302 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 I L + + E + P++F Q N + +Y A + + D + GV Sbjct: 303 TIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYAGV 362 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVP 301 G GL A ++ G+EI EA+ A +A ++ +++ + A+G + Sbjct: 363 GTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAEGWLA 422 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLFDMF 360 + ++V+PPR G+ L + P +Y SCNA T+A+D+ +L ++++ +Q DMF Sbjct: 423 DALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTKAYKVDYIQSIDMF 482 Query: 361 PHTAHYEVLTLLVKQ 375 P TA +E + L ++ Sbjct: 483 PQTARWEGVVKLTRR 497 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 363 bits (932), Expect = 7e-99, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 171/407 (42%), Gaps = 38/407 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPE--QGFRN 57 +C ++ G C C+W P EQL K+ + + E P+ G E +RN Sbjct: 75 RCEVF--GACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRN 132 Query: 58 KAKMVVSGSV---------------EKPLLG-MLHRDGTPEDLCDCP-LYPASFAPVFAA 100 K + S E+ L G H+ G + + D + P+ + Sbjct: 133 KVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASE 192 Query: 101 LKPFIARAGL------TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKA 154 ++ ++ L Y+ G ++ +L+ + + GG+M+ + ++ + Sbjct: 193 IRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTT-TLGGLMV-LIAFAEGTEELRVQL 250 Query: 155 LPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 L L E+ PQ+ + + + + + E + + I P+SF+QTN Sbjct: 251 LEALRERFPQITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENMHGLRYRIGPKSFYQTN 310 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 A +LY R++ + + ++DL+ G G + A + GIE EA+ A + Sbjct: 311 SRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVN 370 Query: 275 AAELGLTRLQFQALD----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 + G+T F A D T A P++++ +PPR G+ P+ + + AP+ I+ Sbjct: 371 RDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIV 430 Query: 331 YSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SCN T A+D+ L +R + DMFPHT H E + LL K Sbjct: 431 YVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSK 477 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 362 bits (931), Expect = 9e-99, Method: Composition-based stats. Identities = 93/403 (23%), Positives = 159/403 (39%), Gaps = 34/403 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP------VEEWCAPVSGPE--QG 54 C ++ RC C W QL+ K + +++ V+ + + Sbjct: 73 CPHFE--RCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTER 130 Query: 55 FRNKAKMVVS-GSVEKPLLGMLHRDGTPEDLCD------CPLYPASFAPVFAALKPFIAR 107 +RNK + G+ + ++ L G DL + C L V + + Sbjct: 131 YRNKMEFAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRGCRAHLDS 190 Query: 108 AG----LTPYNVARKRGELKYILLTES-QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 G L +N G L+ + + + +G + + + T+ AL L E + Sbjct: 191 NGNSSLLDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAALRGLAEAI 250 Query: 163 PQLKVITVNIQPV-HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQL 221 +++ + + GE L+ L + V + SFFQTN A +L Sbjct: 251 AKVRGVASSGGGDADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKL 310 Query: 222 YATARDWVR--QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 A D + + DLFCGVG GL A + G E+ EA+ A+++A G Sbjct: 311 VAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANG 370 Query: 280 LTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 +T F+ D + A P++V+ +P R G+ + L L ++ I+Y SCN T Sbjct: 371 ITNATFRRGDLAKL-KASLPGPDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNPATQ 429 Query: 340 AKDIRELPG--------FRIERVQLFDMFPHTAHYEVLTLLVK 374 A+D+ L G + + DMFPHT H E + +L + Sbjct: 430 ARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 158/377 (41%), Gaps = 22/377 (5%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRNKAKMVVSGSV- 67 W + P QL K+ + + L P+ +RNK + Sbjct: 86 GAPWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGT 145 Query: 68 --EKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 L+ H G + DC L V + F GLT Y+ +RG L Sbjct: 146 AERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFL 205 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 + ++ E + G +R V +L + E + ++ + EG Sbjct: 206 RNCVIREGRRTGQFQVRLVT----MPGELDR--EAFAEAVDCDGLLWTQFDGLGETTAEG 259 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 +TE + L E N + + P +FFQ N +A +LYA A D+ + ++DL+C Sbjct: 260 DTE-LIAGSDYLEEELNGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYC 318 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD---STQFATAQGD 299 G+G GL A +L G+EI +AI A +A + +F A D + + Sbjct: 319 GIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVDTAG 378 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 P++V+V+PPR G+ + + + +P+ ++Y SCN T+A + +L G+ + +V+ Sbjct: 379 SPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAGYVLRKVRPV 438 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T H E + L + Sbjct: 439 DMFPQTPHIECVALFER 455 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 161/371 (43%), Gaps = 11/371 (2%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLAD----FPVEEWCAPVSGPEQGFRNKAKMVVSGS 66 C C W QL K ++ + + ++ S +RN+ + V Sbjct: 73 CGGCDWGGLQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQK 132 Query: 67 VEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 +K GM R D+ DC L F V + ++R G+ PYN KRG LK++ Sbjct: 133 GKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHL 192 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 +L +G + + ++ ++ K + EQLP++ + ++ G Sbjct: 193 VLR-GNRNGDI-VALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRGPYR 250 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 + + + + E D + P SFFQ N V +L + + P + DL+ G+G Sbjct: 251 V-IYGEGIITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIG 309 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVL 305 F + A ++ +E + +A ++ L+ +D+ F + + V+ Sbjct: 310 TFAFYFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEKNEEKFDKVI 369 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHT 363 ++PPR GIGK + + P+ I+Y SCN T+A+D R L GF ++ ++ FDMFP T Sbjct: 370 LDPPRAGIGKD-IELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRAFDMFPDT 428 Query: 364 AHYEVLTLLVK 374 H EV+ + + Sbjct: 429 HHVEVVAIFNR 439 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 174/380 (45%), Gaps = 14/380 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFRNKAKM 61 AG + P QL+ K ++ L + + P G +RNKA+ Sbjct: 103 AGEVGGFELEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQF 162 Query: 62 VVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V ++ + L+++ + DL C + + V + ++ + Y+ Sbjct: 163 QVRL-IDGHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNS 221 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G +K I++ E+ + G + L F+ + KL + + L + E+LP + + NI ++ Sbjct: 222 GIVKTIVVREAAATGEIQLVFITNTP-KLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSL 280 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G+ L + + E + + + ++FFQ NP +LY AR+ + P + + D Sbjct: 281 IWGDQTTLLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVD 340 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TA 296 + GVG GL A ++ G++ A+A A +A +T ++ ++ A Sbjct: 341 AYSGVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA 400 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQ 355 G P+ ++V+PPR G+ L D + AP ++Y SCN T+A+D++ L G++++ +Q Sbjct: 401 SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQ 460 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMFP TA E + K+ Sbjct: 461 SIDMFPQTARCEAVVRFTKR 480 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 160/382 (41%), Gaps = 22/382 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPE--QGFRNKA 59 C++ A C CQ EQLS K ++ ++ P+ + +RNK Sbjct: 71 CSI--ARLCGGCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKV 128 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + + +R+ + + + DC + + +K F+ + LT Sbjct: 129 QVPI-QEKDGLAQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTS----- 182 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +Y+ + +M+ ++R + + +K L ++ P + + P Sbjct: 183 ---NFRYLFIRHIHQRNEVMVMPIVR-EYPFEKSKKLALELVKEFPNITSFSYLKNPKET 238 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ + L E + + +SFFQ NP LY A + + Sbjct: 239 NVILDGPIFEVIGPLFLEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTV 298 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFA 294 DL+CG G G+ A ++ GIEI EAI AK +A L+F +D+ + Sbjct: 299 VDLYCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKI 358 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + ++V+V+PPR+G + M P+ ++Y SC+ T+A+D+ L GF++E Sbjct: 359 VETKESIDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVE 418 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 VQ D+FP T H E + L+ + Sbjct: 419 TVQPVDLFPQTVHVECIALIQR 440 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 156/386 (40%), Gaps = 17/386 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGPEQGFRNK 58 C L+ G C CQ P QLS K +++ + E +S + G+RNK Sbjct: 72 CPLF--GCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNK 129 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFI----ARAGLTPY 113 A + V +G L CP+ V ++ F+ L+PY Sbjct: 130 AIVPVRSQGRGWGMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPY 189 Query: 114 NV-ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 R G L+ +++ G +++ V+R D + +L L L L L V+ +++ Sbjct: 190 REGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPR-GRLLSDLEGLFRLLEGLGVVGLSV 248 Query: 173 --QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 + + + + E + L SFFQ N A +++ D + Sbjct: 249 FRNRRDANFVWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLLD 308 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + + + +L+ GVG A ++ +E A+ +++ G+ + + Sbjct: 309 ETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAA 368 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 G + V+++PPR G + + A +IY SCN T+A+D+ L G Sbjct: 369 EDVLGDLGGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLMLLSQGG 428 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 + + RV+ FDMFP T H E +TL+ + Sbjct: 429 YVLRRVRPFDMFPQTCHVECVTLMSR 454 >UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLW5_9ACTN Length = 452 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 95/433 (21%), Positives = 165/433 (38%), Gaps = 66/433 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGP--EQGFRNK 58 C + A C C+W+ P P QL K + LL + + G + FR+K Sbjct: 8 CPI--ARSCGGCEWLSVPYPIQLKRKQQQVVELLGPLGEKFGVSVEDIRGMREPRAFRHK 65 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A + + + GT + C + + + +R + Y+ Sbjct: 66 AATPFAPGARGRVRSGFYAAGTHRIVTCEACLVEDPRARDILNDVARLASRFNVRAYDED 125 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R RG L++ ++ + M+L V +L R+ + L P++ I +N+ Sbjct: 126 RGRGILRHAVIRTGYATDEMLLTLVANGQ-RLPHEREFISTLQRLHPEITGIVLNVNQRR 184 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV----RQL 232 + G L + ++ + I P SF+QTNP LY A + V + Sbjct: 185 TNAILGRETRVLAGAATMHDKLLNCTFEIGPTSFYQTNPEQTEVLYRLALEGVFGVCEKS 244 Query: 233 PVK-----------------------------------------HMWDLFCGVGGFGLHC 251 + + D +CG G G+ Sbjct: 245 NDERLSSGNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICA 304 Query: 252 ATPDM------QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPE 302 A +L G++ IA AK++A ++ +F D+T+F +G + Sbjct: 305 AKEAGSRGIPVELIGVDQVENNIAMAKRNARANAVS-ARFVCDDATRFIAQEAKRGAPYD 363 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMF 360 +V+++PPR G + +AP+ ++Y SCN T A+D+ L G++ ER+ DMF Sbjct: 364 VVVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASGYKPERIVPVDMF 423 Query: 361 PHTAHYEVLTLLV 373 PHT H E + LL Sbjct: 424 PHTKHVETVVLLS 436 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 160/372 (43%), Gaps = 16/372 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 CA G+C C W + QL K ++NL F ++ P S +RN+ Sbjct: 87 CAH--LGKCGGCLWGLMDYQYQLEFKKKVIENL---FGYDKDIIP-SPKTIYYRNRMDYP 140 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + V G + + +C + + FI + + ++ + G L Sbjct: 141 IYNKVSLKEPGKWY---GYIPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTGFL 197 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +Y+++ E + M+ + K +L + + + + + I+ + Sbjct: 198 RYLVIREGKFTKERMIHIITYKRKKFEELWDFIENIKDL---VTSVYWGIREDLGDVSIS 254 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 E + + L ER D+ +I P SFFQTN A L ++++ + DL+ Sbjct: 255 EKLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYS 314 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG F L A ++ GIEI EA+ AK +A+ + +F A + A Sbjct: 315 GVGLFSLQIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK---APIIKAN 370 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPH 362 ++V+PPR G+ +Y+ + P I+Y SCN T +DI +L G++I +Q DMFP+ Sbjct: 371 KIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKLKGYKIIDMQPLDMFPN 430 Query: 363 TAHYEVLTLLVK 374 T H E + L+ K Sbjct: 431 TPHIENVILMKK 442 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 99/420 (23%), Positives = 161/420 (38%), Gaps = 66/420 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRNK 58 C +A C C QL K + + L + PV G G+RNK Sbjct: 68 CP--EAASCGGCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNK 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V +R G+ E CPL P A+ + L P Sbjct: 126 VRLHVRRGR-----LGFYRPGSHELAPFSCCPLLPPGLLKAARAIVRLLPE--LPP---- 174 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVIT------- 169 L+++ L + + G +++ VL + R+ L + P+L + Sbjct: 175 ----GLQHVTLRQGLATGELLV--VLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGR 228 Query: 170 -----------------------------VNIQPVHMAIMEGETEIYLTEQQALAERFND 200 Q + G L + L ER D Sbjct: 229 SRSGPKDFAGEPALECSGWVKTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLGD 288 Query: 201 VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTG 260 + +I +FFQ N A A LY A + + + D +CG G L + ++ G Sbjct: 289 LRFYISATTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEG 348 Query: 261 IEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLVNPPRRGIGKPL 317 +E+ EAI A++++ L + F+ + +G PE+++++PPR G + + Sbjct: 349 VEVVPEAIVDARRNSILNNLANVHFRTGAAEAVLPRLAGKGYRPEVIILDPPRAGCDRRV 408 Query: 318 CDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++TM PR ++Y SCN T+A+D+ L GF+ VQ DMFPHT H E LVK+ Sbjct: 409 LAAVATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468 >UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase n=3 Tax=Actinomycetales RepID=C7NHZ3_KYTSD Length = 413 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 162/389 (41%), Positives = 223/389 (57%), Gaps = 17/389 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA-DFPVEEWCAPVSGPEQGFRNKA 59 + C + AGRC SC + P QL K A +++LLA P W AP++ +GFR KA Sbjct: 18 VHCHHFSAGRCGSCTLMGTPYRVQLQRKDAVVRDLLAAQVPATAWEAPLASVPEGFRTKA 77 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 K VVSGS P LG+L G DL DC L+ A V L F+ RA L PY++AR+R Sbjct: 78 KFVVSGSAAAPTLGILDEAGRGVDLRDCGLHVPELAAVADRLARFVTRAALPPYDLARRR 137 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK+++LT + S G +MLRFVLR++ L ++R+ LP L LPQL+V++ N+ P H A Sbjct: 138 GELKHLVLTAAPS-GDLMLRFVLRTEGPLPRIREHLPGLLADLPQLRVVSANLHPEHKAT 196 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE EI LTEQ L V L+ P +F QTN VA+ LY A W+ + + D Sbjct: 197 LSGEVEIALTEQTLLPLELPGVTLFAGPGAFVQTNTTVAAALYQQATAWLVDAGARRVAD 256 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAEL----GLTRLQFQALDSTQ--- 292 L+CGVGGF LH A + G+EIA++A+ A+ AA L G +F D++ Sbjct: 257 LYCGVGGFALHAAAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVADASDPAA 316 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAP--------RFIIYSSCNAQTMAKDIR 344 A G + ++VNPPRRG+G L L +P R ++YSSCN T+A D+ Sbjct: 317 VLAAAGTDRDAMVVNPPRRGLGPDLPAMLDARSPAADPASALRTLVYSSCNPATLATDLA 376 Query: 345 ELPGFRIERVQLFDMFPHTAHYEVLTLLV 373 LP +++ +LFDMFP+T H EV+ LL Sbjct: 377 GLPHWQVRSARLFDMFPNTDHAEVVVLLE 405 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 95/400 (23%), Positives = 173/400 (43%), Gaps = 31/400 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKAK 60 C + G C C W P QL K ++NL + E +W + + +RNK + Sbjct: 43 CMHF--GSCGGCCWQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKME 100 Query: 61 MVVSGSV-EKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + S + LG++ + G + +C L FA A++ + + + Y+ + Sbjct: 101 LTFSSDKAGRRYLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIK 160 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLA----QLRKALPWLHEQL-----PQLKVI 168 RG L+ + L E G ++ + + A QL+ + L + + Q + Sbjct: 161 DRGSLRTLTLREGLRTGDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSV 220 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFN---------DVPLWIRPQSFFQTNPAVAS 219 + IQ + E+ L + E+ + I P +FFQ N A Sbjct: 221 FLRIQQIAKGRPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAE 280 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 +LY+ A ++DL+CG G G+ A ++ GIE++ E++ A+++ E G Sbjct: 281 KLYSQALKLADLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENG 340 Query: 280 LTRLQFQALDSTQFATAQGD----VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 L+ + ++ D Q A P++V+V+PPR G+ ++ + ++Y SCN Sbjct: 341 LSNVTIKSGDVGQVLEALSQENSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCN 400 Query: 336 AQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 +T ++ L G++++ VQ D FP T H E +TLL Sbjct: 401 PKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 104/383 (27%), Positives = 162/383 (42%), Gaps = 16/383 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNKA 59 C + AG C C + AKT +++ A + PV G +RNK Sbjct: 73 CPV--AGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDINRYRNKV 130 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC--DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V L + + DC L P + A + +AG T Y+ Sbjct: 131 QLPVGTDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGATSYDEES 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G ++++ L + G +L F+L L ++ L + L + VN Sbjct: 191 HTGLVRHLFLRQGWHSGQRLLCFILNG-RALPDEQRICEELQREF-DLTTVLVNENTART 248 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + + V L + F+Q N A LYA AR + P + Sbjct: 249 NVILGPHTHTVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTYAALQPEDFL 308 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT--RLQFQALDSTQFAT 295 DL+CG+G GL +L G+EI +A+ AK +AA LGL+ R F+ D+ A Sbjct: 309 LDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRCQDAGAAAA 368 Query: 296 AQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 P++++V+PPR+G + MAPR ++ SCNA T A+D R L G+R Sbjct: 369 QLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWLTEHGYR 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 VQ D+FP T H E + LV Sbjct: 429 AMEVQPVDLFPRTRHVECVVKLV 451 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 12/370 (3%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVSGSVEKPLL 72 + QL K A +K L + ++ G + +RNK + V + Sbjct: 95 PLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTS 154 Query: 73 GMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES 130 G R GT + D + A ++ + + +T ++ +RG ++YI++ Sbjct: 155 GFYKR-GTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRG 213 Query: 131 QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTE 190 +M+ V + ++ + + + QL +LK + +N P ++ L Sbjct: 214 YYSHELMVVLVSNEEV-ISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWG 272 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 ++A+ + I P SF+Q NP LY A P + D + G+G G+ Sbjct: 273 EKAIYDTLLGYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIGIS 332 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFATAQGDVPELVLVN 307 A+ ++ G+E+ A+A A+ + ++ ++ D+ + QG P++V V+ Sbjct: 333 VASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADAPVQFKKWQEQGLKPDVVFVD 392 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE-RVQLFDMFPHTA 364 PPRRG+ L + + M+P I+Y SCN T+++D E+ G+ I+ V D FP T+ Sbjct: 393 PPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTS 452 Query: 365 HYEVLTLLVK 374 H E +T+ K Sbjct: 453 HVESITVFRK 462 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 25/380 (6%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNK 58 + C + A C CQ QL K +K L V+ P+ G +RNK Sbjct: 69 LTCEV--AKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGIEVK----PILGMDNPWYYRNK 122 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ V K +G + C +C + VF+ ++ I + Sbjct: 123 AQFPVKIKDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKIT---------LK 173 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +L+++ + S S + + F+ +++ + L L + I N + Sbjct: 174 MAQDLRHVFIRHS-STDEIQVVFIGKNEKNIISLS---DQLKNTFANITSIVFNYNTRND 229 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+T L + E + + ++FFQ NP LY+ A + Sbjct: 230 NVILGDTYKVLYGNDYIIEECLGNKVKLHFKAFFQVNPKQMEVLYSQAIKAANLTGNETC 289 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA- 296 D++ G G G+ + + G+EI EA+ A + L + D+T FA Sbjct: 290 IDMYAGTGTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDH 349 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 + D +++ ++PPR+G+ + TM P I+Y SCN +T+++D++ G++ E V Sbjct: 350 KEDKIDVIFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYV 409 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 Q DMF T E + L K Sbjct: 410 QPVDMFCQTIGLECVAKLTK 429 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 165/405 (40%), Gaps = 34/405 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF--PVEEWCAPVS-GPEQGFRNK 58 +CA + C C+W EQL K ++ L + P ++ + +RNK Sbjct: 79 KCAHFAT--CGGCRWQQMGYAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNK 136 Query: 59 AKMVVSGSVEKPLLGML---HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S + + L G +L +C L + F + + + L Y+ Sbjct: 137 MEFSFSTDLSQNKYLGLIMDSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHH 196 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL--------PQLK- 166 R G L+ + L E Q G M+ + + A + L L P+ + Sbjct: 197 YRNTGSLRTLTLREGQRTGDRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRL 256 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERF----------NDVPLWIRPQSFFQTNPA 216 I + I + + E+ L + E+ + I P +FFQ N Sbjct: 257 SIFLRIHQIAKGMASQFYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTR 316 Query: 217 VASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA 276 A +LY+ A ++DL+CG G + + + G+EI EA+ A+ +AA Sbjct: 317 QAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAA 376 Query: 277 ELGLTRLQFQALDSTQFATAQGDV-----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 + G + + F + T + P+LV+V+PPR G+ +L ++P+ I+Y Sbjct: 377 KNGCSNVHFLCGAVHEQLTKIIEENLFPLPDLVVVDPPRAGLDPHALQHLIKLSPKKILY 436 Query: 332 SSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 SCN T +I L G+R+E +Q D FPHT H E + +L K Sbjct: 437 VSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S9K0_LEPBA Length = 399 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 162/391 (41%), Gaps = 23/391 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKM 61 C + G C C ++ ++L K ++K L + E V P + +R+K ++ Sbjct: 11 CTHF--GTCGGCNYLDIDYTKELRKKEQNIKELFKAYRHVEIKTIVPSPSPEYYRHKIQL 68 Query: 62 VVS----GSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 G+ LG+ +++ + D +C + V A+K + R GL PYN Sbjct: 69 PFGRRIVGNKTLLTLGLFNKEASFVLDQTECQIQDPGLTEVALAVKQWARREGLLPYNEK 128 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE----------QLPQLK 166 KRG +KY++ +S + G +++ V + L + A LH + +L Sbjct: 129 SKRGMMKYLVARKSITTGEIIVGIVTAKE-DLPHAKDASKRLHTAIQNRIGKTGKFGKLV 187 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I NI H + G E L + + E F + +F Q NP LY Sbjct: 188 GIIHNINTKHTTMALGREEHLLWGRPYIHEHFGKHKFRVGLSTFLQVNPIQTPSLYNLVL 247 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 D + + D + G+G A ++ GIE + A +S + ++F+ Sbjct: 248 DEIE--KDSRVIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFR 305 Query: 287 ALDSTQFA-TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 + T G + ++++PPR G+G + + + M + I+Y SC+ ++ +D Sbjct: 306 KGRVAEVLPTLYGKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLREDSIL 365 Query: 346 LPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L + + +Q DMFP T H E + + + Sbjct: 366 LTKQYFLNSLQPVDMFPRTDHVETVAVFRNK 396 >UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM03_CRYCD Length = 543 Score = 356 bits (914), Expect = 9e-97, Method: Composition-based stats. Identities = 97/431 (22%), Positives = 158/431 (36%), Gaps = 61/431 (14%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGPEQ--GFRNKA 59 C L + C C I +P QL K + L AD P+ G E GFRNK Sbjct: 109 CPL--SAECGGCSHIEEPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKI 166 Query: 60 KMVV--------SGSVEKPLLG-----------------------------------MLH 76 V G L+ Sbjct: 167 ASPFAPVRSSRTGKRVRHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLY 226 Query: 77 RDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDG 134 GT + CP+ V AA + + + PY+ G ++++++ Sbjct: 227 AAGTHRLIRADKCPVEHPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGHESD 286 Query: 135 GMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQAL 194 +++ V + L + P++ + N+ + G E L + Sbjct: 287 EVLVTLVTNGKV-FPSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFI 345 Query: 195 AERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK---HMWDLFCGVGGFGLHC 251 + + I SF+Q N LY TA + + D +CG G GL Sbjct: 346 LDTLCGLSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVA 405 Query: 252 ATPD--MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---TAQGDVPELVLV 306 A+ Q+ GI+ AS +I A+Q+A G+ F D+T F A D +++++ Sbjct: 406 ASQVPNSQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDFLLHRAAASDSIDVLMM 465 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTA 364 +PPR G + +AP ++Y SCN T +D+R G+ + R++ DMFPHT Sbjct: 466 DPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVDMFPHTD 525 Query: 365 HYEVLTLLVKQ 375 H E + LL++ Sbjct: 526 HIETVALLMRN 536 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 99/416 (23%), Positives = 170/416 (40%), Gaps = 45/416 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-----PVEEWCAPVSGPEQ--GF 55 C ++ +C C W Q+ K + ++LA E G ++ + Sbjct: 122 CPHHE--QCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRY 179 Query: 56 RNKAKMVV-SGSVEKPLLGMLHRDG--TPEDLCD-CPLYPASFAPVFAALKPFIARAG-- 109 RNK + SG+ K ++G+ R + DL C L V AA++ + RA Sbjct: 180 RNKMEFAFASGTRGKTVVGLRPRGANDSVVDLSGGCLLQSEEADRVLAAIRETLERADGR 239 Query: 110 LTPYNVARKRGELKYILLTE--SQSDGG--MMLRF-VLRSDTKLAQLRKA-LPWLHEQLP 163 L ++ G L+ + + + G +M+ S +L A L + ++P Sbjct: 240 LEAFDRTSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVP 299 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 + + + + + L E N + + SFFQTN A++L Sbjct: 300 GVVSVVHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVR 359 Query: 224 TARDWVRQLPVKH--MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 R+ K + DLFCGVG GL A+ ++ G E+ EA+ AK++A +T Sbjct: 360 QVREACAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNIT 419 Query: 282 RLQFQALDSTQFATAQGDV-------------PELVLVNPPRRGIGKPLCDYLSTMAPRF 328 +F +D + ++G P++V+ +P R G+ L L T+ R Sbjct: 420 NAKFYRVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALIAILRTIGARR 479 Query: 329 IIYSSCNAQTMAKDIRELP---------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 I+Y SCN T A+D+ L + ++ V DMFPHT H E + +L ++ Sbjct: 480 IVYVSCNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 159/384 (41%), Gaps = 14/384 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPE-QGFRNKA 59 C A +C C + +P EQL K +K L+ V+ P +RNK Sbjct: 8 CMH--ADKCGGCTYQGKPSYEQLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKM 65 Query: 60 KMVVSGSVEKPLL-GMLHRDGT---PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S + L H G D+ C L + + A++ F + YN Sbjct: 66 EFTFGNSEREGELKLGFHEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNK 125 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL---PQLKVITVNI 172 + G L+++++ +++ V S ++ L L +L I + Sbjct: 126 KKHNGFLRHLVIRSGIRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTV 185 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 GE L + ER D+ +R SFFQTN A LY A + + + Sbjct: 186 NDKIQDTANGEDIRILYGRDYYMERIMDLDFKVRMGSFFQTNVQAAENLYRYAINSIDNV 245 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 K ++DLFCG G A ++ G++I+ +AI A ++ + + F D + Sbjct: 246 QDKVIFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFE 305 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 + P++++++PPR G+ + + +PR I+Y SCN +T+ ++ + Sbjct: 306 VIRNINEKPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFEYNRYN 365 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 I+ ++ FD F T+H E + LL K Sbjct: 366 IKSLKAFDNFFFTSHVEAVALLSK 389 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 175/393 (44%), Gaps = 24/393 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL----ADFPVEEWCAPVSGPEQGFRNK 58 C +++ C C + +Q K + L+ + E+ G ++ +RNK Sbjct: 74 CEKFNS--CGGCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNK 131 Query: 59 AKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYN 114 + + P++ LH+ + D+ +C L +F + F ++ ++ Y+ Sbjct: 132 MEFSFGNEYKDGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYH 191 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTK----LAQLRKALPWLHEQLPQLKVITV 170 G L+ +++ + + + + V S + + + ++ L L + LK I Sbjct: 192 RLTHIGFLRNLVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLSM-GLKSIIH 250 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV- 229 I + + EI L ++ + ER D+ + P SFFQTN +LY + + Sbjct: 251 TINDNKSDSVRADKEIILYGKRDITERLFDLSFNVSPYSFFQTNSFGVEKLYQEVINNLL 310 Query: 230 ---RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + ++DLF G G G + ++ GIE+ EA+ A ++A + G+T +F Sbjct: 311 FITKNDEKPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFI 370 Query: 287 ALDSTQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A D + + P++++++PPR G+G+ L +IIY SCN +T+A+D+ Sbjct: 371 AGDVFEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKTLAEDL 430 Query: 344 RELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + + ++RV DMF +T H E + L+ + Sbjct: 431 KIFEYNSYILKRVVCVDMFGYTPHVECIVLIQR 463 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 161/385 (41%), Gaps = 18/385 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG----PEQGFRNK 58 C Y + C CQ Q K + L E + E +RNK Sbjct: 67 CRWYRS--CGGCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNK 124 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A V +G R + CP+ ++A +K I Y+ Sbjct: 125 ASFPVRARGRAGDVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKS 184 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVITVNIQP 174 G L+++++ ++ ++L V + + L L + L E+ P+L+ + VN+ P Sbjct: 185 NSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNP 244 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ G + + + L ER + L SFFQ NP A QL+A A Sbjct: 245 DEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQAEQLFAYAASLAE---G 301 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-F 293 +++ +L+CGVG + + +E+ + A+A A+++ + L + Sbjct: 302 QNLLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVV 361 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 A A + + V+V+PPR G K L + ++ ++Y SCN T+A+D L G+ + Sbjct: 362 APADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLRDAGYVL 421 Query: 352 --ERVQLFDMFPHTAHYEVLTLLVK 374 + +++FDMFP T H E + LL K Sbjct: 422 DMDSLKVFDMFPQTCHVETVCLLSK 446 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 172/427 (40%), Gaps = 65/427 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRNK 58 C ++ RC CQ M P Q KT +++ L E + G +RN+ Sbjct: 71 CRVFS--RCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNR 128 Query: 59 AKMVVS---GSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +M + G+ KPL +R + + +CPL P SF PV AL+ + Sbjct: 129 VQMHLRREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEID---- 184 Query: 114 NVARKRGELKYILLTES---QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP------- 163 +++++L + + G MML V + RKA+ L ++L Sbjct: 185 --PAGELPIRHVVLKTTTPLERAGEMMLILVF--SAWRSAWRKAVGDLAKRLMGEGATGE 240 Query: 164 ---------------------------QLKVITVNIQPVHMAIMEGET---EIYLTEQQA 193 L + VN+ + G + ++ Sbjct: 241 GATGEGATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKER 300 Query: 194 LAERF-NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 L + + + + P SF Q NP LY ++ + + D +CG G L A Sbjct: 301 LTDYLPGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLA 360 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV---PELVLVNPP 309 ++ GIE A+ A+++A + G+T ++F + + P++++++PP Sbjct: 361 RDCARVIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPP 420 Query: 310 RRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYE 367 RRG + + ++ P I+Y SC+ ++A+D L G+++++V DMFP T H E Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVE 480 Query: 368 VLTLLVK 374 + L+ + Sbjct: 481 TVVLMSR 487 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 166/398 (41%), Gaps = 30/398 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPE-QGFRNK 58 CA + G C C+W QL K +++N L + E V+ +RNK Sbjct: 75 CAHF--GYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNK 132 Query: 59 AKMVVSG-------------SVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALK 102 + S ++E+ H G D+ C L + +K Sbjct: 133 MEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIK 192 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F + Y+ ++ G L+ +++ S S G +ML SD+K L L + + Sbjct: 193 RFALENNIAFYSPRQQTGVLRSMMIRIS-STGEIMLVIQFFSDSKKCNL--LLEHIAQTF 249 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 PQ+ + I + + + E + I +SF+QTN A +LY Sbjct: 250 PQITSLQYCINSKGNDAIYDQDLKIYKGTDCIYEEMEGLRFKINAKSFYQTNSKQAHKLY 309 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 RD+ + ++DL+ G G A ++ G+E EAIA AK +A G+ Sbjct: 310 QITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIEN 369 Query: 283 LQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 + F D P++++ +PPR G+ K + + + +AP I+Y SCN+ T Sbjct: 370 VSFYVGDMKNVFNDTFIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSCNSAT 429 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D+ L +++ +VQ DMFP T H E + LL K+ Sbjct: 430 QARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 159/378 (42%), Gaps = 13/378 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGPEQGFRNKAKMVVSGSV 67 C C + +L K +KNL D ++ + S + +RNK + S Sbjct: 79 CGGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTFGDSK 138 Query: 68 EKP-LLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + L+ LHR ++ D C + F + +++ + Y+ + G L+ Sbjct: 139 KGGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLLR 198 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLR--KALPWLH--EQLPQLKVITVNIQPVHMAI 179 ++++ ++ G +M+ V SD LR L L + + ++ + I Sbjct: 199 HLIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLSIDLVGKIVSVYHVINDSPADA 258 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + E + ++ + E + I P SFFQ N A +LY A D + D Sbjct: 259 VIVEKLNLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQSMDVLD 318 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 L+ G G A TGIEI EAI A ++A + + F D + GD Sbjct: 319 LYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDVLEEIEKVGD 378 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 ++++++PPR GI + + + IY SCN +T ++++E GF I+ +++ Sbjct: 379 KYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKDYEIY 438 Query: 358 DMFPHTAHYEVLTLLVKQ 375 D FP + H E + LL ++ Sbjct: 439 DQFPKSRHLEAIALLTRK 456 >UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLG7_9ACTO Length = 436 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 168/421 (39%), Positives = 229/421 (54%), Gaps = 53/421 (12%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--------FPVEEWCAPVSGPE 52 M+C ++ C SC EQL+AK A ++ LL P EW P + E Sbjct: 1 MRCRYLESDLCHSCTRANVAYAEQLAAKDASVRALLERSARANGAAAPDVEWNPPFASAE 60 Query: 53 QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +GFRNKAK+ V G++ P LG+L D D+ CPLY + A L+ FI AGLTP Sbjct: 61 KGFRNKAKLAVGGTLSNPTLGILGSDKRGIDIAGCPLYEPAVASGIEPLREFIGLAGLTP 120 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 ++V RGELK ++LT DG +M+RFVLRS L ++RK + L + LP++ V++VN+ Sbjct: 121 FDVPSGRGELKSVILT-GSPDGELMVRFVLRSTESLVRIRKHMSLLRQWLPRIAVVSVNL 179 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 P A++EGE EI L +Q+L DV L +RPQSFFQTN VA LY AR+WV L Sbjct: 180 LPERKAVLEGEKEILLGPEQSLRMDLGDVALRLRPQSFFQTNTRVAVGLYRQAREWVGLL 239 Query: 233 -----------------PVKH------------------------MWDLFCGVGGFGLHC 251 P +WDL+CGVGGF LHC Sbjct: 240 CDAEGGGSHDLEAKRAEPADSEAKGAKAKGAKPASSASAGGRSIELWDLYCGVGGFALHC 299 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 A P ++TG+E++++A+ A+ SAA G+ F DS A G ++V+VNPPRR Sbjct: 300 AGPGRRVTGVELSAQAVESARASAAAAGID-ADFIVGDSLSAARELG-TADVVVVNPPRR 357 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTL 371 GIG L ++ RF++YSSCN ++A D+ +P FR R ++FDMFPHT H E L L Sbjct: 358 GIG-GLASWIDASQIRFVLYSSCNPASLAADVASMPSFRPVRARVFDMFPHTGHTETLVL 416 Query: 372 L 372 L Sbjct: 417 L 417 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 163/374 (43%), Gaps = 30/374 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + G+C C QL K LK +L F VE +P G RN+ + Sbjct: 60 RCKAF--GKCGGCTLQHLNYDYQLEFKRKKLKRILG-FEVEVVPSPKI---FGHRNRIDL 113 Query: 62 VVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 ++ +G R D+ +CP++ + LK FI ++ +N+ + Sbjct: 114 AITKDG----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDE 169 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+Y++L E + +M+ FV + I ++ + Sbjct: 170 GFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYF---------DFDSIYWSVNRSKSDV 220 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G+ E + ++ + ER +DV I P SFFQTN A L + V + + D Sbjct: 221 SYGDIERF-WGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILD 276 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 ++ GVG FG++ A + G + AI A+++ + +F+ + + Sbjct: 277 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK--- 332 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDM 359 + V+V+PPR G+ L L+ P I+Y SCN +T A+D++ L +RI+ + DM Sbjct: 333 GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD-YRIDEIVALDM 391 Query: 360 FPHTAHYEVLTLLV 373 FPHT H E++ LV Sbjct: 392 FPHTPHVELVAKLV 405 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 160/379 (42%), Gaps = 12/379 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + G C C P +QL K + +L +F V E S +RNK + Sbjct: 72 KCKFF--GACGGCALQNLPYEKQLERKLRWVNQIL-NFEVAEILG--SPKWFQYRNKMEY 126 Query: 62 VVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + PL LH+ T D+ DC + F + A F A Y Sbjct: 127 TFGDTVKDGPLALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKKVS 186 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G LK++++ S++ G ++ V S + + ++ + I Sbjct: 187 HQGFLKFLVVRRSETTGXFLVNIVTSSQIAY-DFTAFVEAIKNTGFKIAGVLHTISDSPS 245 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ ++ L + E + I P SFFQTN A LYA A + L K + Sbjct: 246 DAIKPDSVELLYGLNYIYEEILGLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKTV 305 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 +DL+ G G A ++ GIEI +EA+A AK++A GL +F A D Sbjct: 306 FDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDVLTQIDNA 365 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 P++++V+PPR GI + + + I+Y SC A ++A+D+ G+ + + Sbjct: 366 DVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGGYHVAQSL 425 Query: 356 LFDMFPHTAHYEVLTLLVK 374 DMF T H E + LL + Sbjct: 426 CVDMFAQTYHVETVVLLKR 444 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 25/388 (6%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSG-PEQGFRNKAKMVVSGS-V 67 C + EQL KT +K L ++ PV +RNK + + Sbjct: 86 GGCNYQYYTYDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVKPDKYRNKMEFSFGNAAK 145 Query: 68 EKPLLGMLHRDGTPEDLCDC---PLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 P++ LH+ + D+ + L +F ++ F + G Y+ G + Sbjct: 146 GGPIILGLHKQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRN 205 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP--------QLKVITVNIQPVH 176 +++ +++ +++ V + + K E L ++ I Sbjct: 206 LVIRKAEFTKQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNF 265 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV-- 234 ++ E+E L ++ L E + I P SFFQTN +LY ++ ++ Sbjct: 266 SDMVISESETILYGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIK 325 Query: 235 ---KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 ++DLF G G G + Q+ GIE+ EA+ A ++A + F A D Sbjct: 326 IDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDVF 385 Query: 292 QFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP- 347 G P++++++PPR G+G+ L + IIY SCN +T+ D+ + Sbjct: 386 AKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMTDLIKFGE 445 Query: 348 -GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+ R + DMFP T H EV+ LL K Sbjct: 446 FGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Mobiluncus mulieris RepID=D0YVB6_9ACTO Length = 450 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 142/435 (32%), Positives = 217/435 (49%), Gaps = 61/435 (14%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF--PVEEWCAPVSGPEQGFRNK 58 ++CA + G CRSC+ + Q +Q+ K + +L F P +W +P P+ GFRNK Sbjct: 17 VKCAYFSRGSCRSCELMGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNK 76 Query: 59 AKMVVSGSVEKPLLGM--LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 AKMV+SGS + LG+ R DL CPLYP S FA ++ ++ R G PY + Sbjct: 77 AKMVISGSKKTITLGLPPTPRHPHGVDLEKCPLYPESIRATFAPIRQWLLRLGARPYQID 136 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RGEL+++L++ + + G +M+R VLRS L ++ P L +LP L+V +VNIQP H Sbjct: 137 AHRGELRHVLVSANPA-GELMVRLVLRSKAALKRVENTWPDLARELPGLRVFSVNIQPEH 195 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 A+++G EI L+ Q+ L L++ P +FFQTN A A LY A +W +L Sbjct: 196 TALIDGPEEIVLSPQRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGL 255 Query: 237 MWDLFCGVGGFGLHCAT----------------PDMQLTGIEIASEAIACAKQSAAE--- 277 +WDL+CGVGGFG A Q+ G+E+A AI AK +A Sbjct: 256 VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRA 315 Query: 278 ---------------------LGLTRL--------------QFQALDSTQFATAQGDV-- 300 + +F D+ ++ Q + Sbjct: 316 TPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITADAGKWIKNQKKLVT 375 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+L++VNPPRRG+G L ++ +IYSSC ++ ++ + +R+ ++L DMF Sbjct: 376 PDLLVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKSYRVTELKLVDMF 435 Query: 361 PHTAHYEVLTLLVKQ 375 PHT H E + LL ++ Sbjct: 436 PHTRHVETIVLLSRK 450 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRN 57 +C + C CQW+ QL +KT +K L + + + G+RN Sbjct: 69 KCKHFP--ECGGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRN 126 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + + L + D+ CP+ P F + + + + + Y+ Sbjct: 127 RMEYTFQENNKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKT 186 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K+G LK++++ S S M+ V ++ L + + + + + Sbjct: 187 KKGILKHLVIRRSFSKNQTMVIIVTNTE-YLPYEEEIKQFFQQNFHPY-SLIHLMNSSDS 244 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK-- 235 ++ G + L + L E F+D I P SFFQ N V +L ++ + K Sbjct: 245 VVLRGPYKTLL-GEGVLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDA 303 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FA 294 M DL+ GVG F ++ + + +E + ++ A ++ + F S Sbjct: 304 TMLDLYSGVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYLM 363 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + V+++PPR+G+ K LS+MA + IIY SC+ T A+D+ GF ++ Sbjct: 364 KNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLK 423 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ FDMFPH+ H E + +L K Sbjct: 424 SVQPFDMFPHSYHIENVGILEKN 446 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 152/380 (40%), Gaps = 17/380 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNKA 59 C + +C CQ EQL K+ LA V+ S G+R KA Sbjct: 67 CPHFS--QCGGCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKA 124 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +G + L CP+ + + + + L Y Sbjct: 125 HFTFGEENNILNIGYFSKSDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSY--FTSN 182 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL--PQLKVITVNIQPVHM 177 G L+++ + S G + V Q K + E++ + + ++ Sbjct: 183 GTLRHLQVRVSLLTGEKQV-LVT-----FTQFPKNFENVAEEILSAGISSLALHQNTAQN 236 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + G+ Q + E+ I P SFFQ NP A +L++ A D++ P + Sbjct: 237 KTVIGKGATLYNGNQYVQEQLMGKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIV 296 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 ++ + GVG F L A + E EA+ A ++AA + +QF A + A + Sbjct: 297 FEGYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSL 356 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 V+V+PPR G+ + + ++ + P I+Y SC+ T+A+DI G+ + +Q Sbjct: 357 QQKINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHIQ 416 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMFP T H E + LL+K+ Sbjct: 417 AIDMFPQTTHVECVALLIKE 436 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 161/378 (42%), Gaps = 13/378 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPEQG--FRNKAKMVVS 64 A C C Q + K L + ++ AP ++G +RN+ + + Sbjct: 87 AQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPLR 146 Query: 65 GSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + L R G+ +L CP+ + LK + +GL+ + L Sbjct: 147 RGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQGL 206 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +++ L G +++ V S +L L++ E+ +K +T+N+QP + G Sbjct: 207 RHLGLRIGHHTGEVLITVV--SSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILG 264 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP-VKHMWDLF 241 T L + E F + L + +FFQ N A ++ A W+ Q + D + Sbjct: 265 ATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDAY 324 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDSTQFATAQGDV 300 CG+G L A + G+EI ++I A+ +A GL R +FQA D Sbjct: 325 CGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLKETLAT 384 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL----PGFRIERVQL 356 ++V+PPRRG+ + + + + P + Y SC+ T A+D++ L +R+E++Q Sbjct: 385 CSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQPEGPYRLEQLQP 444 Query: 357 FDMFPHTAHYEVLTLLVK 374 D FP T H E L L + Sbjct: 445 VDFFPQTTHLENLAFLRR 462 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 28/375 (7%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C ++ G+C C QL K L+ +L E S G RN+ + Sbjct: 61 RCKVF--GKCGGCILQHINYNSQLEFKKEKLRKILGR----EVEIIPSPRIFGHRNRIDL 114 Query: 62 VVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V+ + +G + + D+ +CP++ + L+ +I ++ + + Sbjct: 115 AVTVNA----IGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDS 170 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+Y++L E + G +M+ FV + LP I +I + Sbjct: 171 GFLRYMVLREGKFTGEIMVNFVTKEGE--------LPDPTSYFDFADSIYWSINRSKSDV 222 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G+ E Y ++ + E + V I P SFFQTN A L T +V + + D Sbjct: 223 SYGDIEKY-WGKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVE---GEKVVD 278 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 ++ GVG FG++ A M++ G + + AI A ++A + F A D Sbjct: 279 MYSGVGTFGVYLAKKGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDRE----VDIK 334 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDM 359 + V+V+PPR G+ L L+ P I+Y SCN +T +I +L + IE + DM Sbjct: 335 GFDTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLNNYIIEELIALDM 394 Query: 360 FPHTAHYEVLTLLVK 374 FPHT H E++ L + Sbjct: 395 FPHTPHIELVGKLRR 409 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 155/387 (40%), Gaps = 19/387 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C Y G C CQ QL K +++ + V+ S + G+RNK Sbjct: 69 RCPWY--GLCGGCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNK 126 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPV----FAALKPFIARAGLTP 112 A V + R G+ + + CP+ + + P + R G+ Sbjct: 127 ASFPVRSENGGEI--GFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPF 184 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVL--RSDTKLAQLRKALPWLHEQLPQLKVITV 170 Y+ R +G L++++ ++ + L V R L ++L L E Sbjct: 185 YDERRHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVW 244 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 N + GE + + E+ ++ L +FFQ NP A +L+ A V Sbjct: 245 NENSSRGNRILGERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRASSIVA 304 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + + +L+ GVG + A + +E + AI ++ + GL ++ + Sbjct: 305 ERGGA-VVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRA 363 Query: 291 TQ-FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--P 347 T P++++V+PPR G + D ++ + ++Y SCN T+A+D +L Sbjct: 364 EDTVRTMVEAKPDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKLVSD 423 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + ++ FD+FP T H E L + Sbjct: 424 GWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 13/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGPEQGFRN 57 +C+ Y C C Q + K L N L+ E + +RN Sbjct: 37 KCSFYSD--CGGCSMQEIEPHYQFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRN 94 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K+ V + ++ + D+ +CP+ + ++ + + + Sbjct: 95 KSTFPVYNESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHD 154 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R++G L++I + + +++ FV K L L+ + I NIQP Sbjct: 155 IRRKGGLRHISIRSGINTNEVLITFVSNFSIK-KLLFPITNKLNGSESNVVGILNNIQPK 213 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL-PV 234 + G T LT + + ++F + + I SFFQ N A + R+ + + Sbjct: 214 PNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFFQVNLVEAEKAINCIRNIISNTNKI 273 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + D + G+G + A+ ++ GIEI +EA A ++A + + F+ D T++ Sbjct: 274 VRIIDAYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYL 333 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRI 351 + ++++PPR+G+ L D ++ + P I Y SCN T+A+D+ + + I Sbjct: 334 PKILLPNDFLILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILREHKYSI 393 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + FD FP T H E L L + Sbjct: 394 ISITAFDFFPQTTHLETLVYLKR 416 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 154/379 (40%), Gaps = 12/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPEQ--GFRN 57 C +YDA C CQ L+ K +K L + + G + +RN Sbjct: 75 CPVYDA--CGGCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDTIGMDNPKNYRN 132 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 KA + + K GM R+ + C + +F + + R + Y+ Sbjct: 133 KASLPLRLIDNKNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDPV 192 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + G + + ++ +++ + + F+L L + L + P++ I I P Sbjct: 193 LQTGIISHAIVRITENLNEVQVTFILSK--AFDGLDNLVHELVKLHPEIMSIYKVINPDV 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 E + ++ + E+ + P +FFQ N + A + Y + + P + Sbjct: 251 RQSYFTEDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIKPTEI 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D + G+ + + IEI +A+ AK S + + + + Sbjct: 311 VVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIENNFEDALDN 370 Query: 297 QGDVP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI-RELPGFRIERV 354 D+ +++L +PPR G+G+ + + P+ ++Y SCN T+AKD+ L + ++ + Sbjct: 371 LKDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLLEDYDLKHI 430 Query: 355 QLFDMFPHTAHYEVLTLLV 373 DMFP+T+ E +TLL Sbjct: 431 TPIDMFPYTSLVESITLLE 449 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 15/371 (4%) Query: 16 WIMQPIPEQLSAKTADLKNLLADF-----PVEEWCAPVSGP-EQGFRNKAKMVVSGSVEK 69 +QL K L + + P + ++ P +G+RNK + ++ + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144 Query: 70 PLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 + G+ ++ + + + K + + + + G +KYI Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYG-VKYIATR 203 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 S +G + + FV +D K+ + K + L + +K I +NI ++ G + L Sbjct: 204 TSFYNGDVQVTFVANTD-KIKNMDKVVNELKRE-RIVKSIILNITNDKDHLVMGTESVTL 261 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 + E+ D + +SFFQ NP +LY ++ + D +CGVG G Sbjct: 262 YGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTIG 321 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVL 305 + + ++ G++I AI A + L + A D+ + +G ++ + Sbjct: 322 QYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWKKKGINFDVAI 381 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFPHTA 364 V+PPR G+G L L + + I+Y SCN T+A+D++ L ++I R+Q DMFP TA Sbjct: 382 VDPPRVGLGP-LAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIRRIQPVDMFPGTA 440 Query: 365 HYEVLTLLVKQ 375 E + L+++ Sbjct: 441 AVEAVVELIRK 451 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 154/376 (40%), Gaps = 14/376 (3%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC------APVSGPEQGFRNKAKMVVSG 65 + P+QL K + L + ++ + +RNKA+ + Sbjct: 84 GGLELAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPTPNAWNYRNKAQYQIEF 143 Query: 66 SVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + K LG+ + DL D P V +K I + + + R +K Sbjct: 144 NKGKSKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKT 203 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 I + +S + G + + + K+ L+ + +LP + + N + G Sbjct: 204 IAVRQSNATGEIQVTLITIG-KKIKDLKLLASHIM-KLPNVVSVFQNETQWQNPQVWGNK 261 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 I L + + E + P++FFQ NP + LY+ A ++ P + + D + GV Sbjct: 262 TIKLFGKSHITEEILGKKFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGV 321 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVP 301 G G+ + Q+ GIE EA+ A+++ + ++ + + QG Sbjct: 322 GTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKLLPELKNQGVPI 381 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMF 360 ++V+PPR G+ K L L + P +Y SCN T+AKD+ L + + +Q DM Sbjct: 382 NALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYDVRVIQPVDMM 441 Query: 361 PHTAHYEVLTLLV-KQ 375 P T +E +T LV ++ Sbjct: 442 PQTPRWEGVTKLVLRK 457 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 157/382 (41%), Gaps = 20/382 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPE-QGFRN 57 QC + GRC C ++ QL K ++ L + ++ ++ P G+RN Sbjct: 72 QCPV--QGRCSGCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRN 129 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + K+ + + + G+ + C ++ + + + L Y+ Sbjct: 130 QCKLPIREERGRLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQFRLKAYDPK 189 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP-V 175 + G L+ ++L +G V D+ + L + + I NI P Sbjct: 190 KGTG-LRTLVLR--GFEGQYQCVLVSGEDSLPKGFIEKLKAIE----GMTCIMQNINPDK 242 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + L + L +F DV L + SFFQ N A Q+ A + P Sbjct: 243 RTRQLFSNRWSLLAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIE--PCD 300 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + + + GVGG L + GIE EA+ AK++A ++F D+ + Sbjct: 301 TLVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMK 360 Query: 296 A--QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 + + V+V+PPR G+ + + L P+ I+Y SCN T+ K+++EL + ++ Sbjct: 361 KIIRRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVK 420 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 V FDMFP+T H E + LL K Sbjct: 421 TVIPFDMFPNTPHVETVVLLSK 442 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 21/388 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGP-EQGFRNK 58 C A +C C W Q+ K +++ L + P E +RNK Sbjct: 79 CIH--AIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYRNK 136 Query: 59 AKMVVSGSV--EKPLLGMLHRDGTPED-LCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S LLG+ D + DC L + + ++ ++ + Sbjct: 137 MVFAFAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLEKK 196 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-------LKVI 168 +++++ E+ G +++ ++ L + + L ++L Q +K I Sbjct: 197 ILTLKYFRFLIIRETI-TGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKGI 255 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 ++ + I E I+ ++ L E+ D+ L +FFQ N LY+ Sbjct: 256 ILSRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILSM 315 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + + +WDL+ GVG L A +++ G+E + +I A ++ LG T F Sbjct: 316 AQLTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQD 375 Query: 289 DSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 D+ F +Q G P++V+V+PPR G+ K + + L +APR IY SCN T A+DI Sbjct: 376 DAFSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIAM 435 Query: 346 L-PGFRIERVQLFDMFPHTAHYEVLTLL 372 L P F I++ Q D+FPHT H E ++ L Sbjct: 436 LSPHFVIQQTQPVDLFPHTPHVETVSYL 463 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 35/380 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGP--EQGFR 56 C+++ GRC CQ + L K +++ L + P G +R Sbjct: 86 CSVF--GRCGGCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYR 143 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NKA++ E LG DC L S + + + + Sbjct: 144 NKARLH---RGEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQDKNLFPD 200 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 L + E+ S G ML L +R+A W ++ T ++ + Sbjct: 201 ------LNALTFREN-SQGEGMLIL-----DSLKDVRQADVW-----SEMGGGTHSVWGI 243 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + GE E + Q+ E I P +F Q NP +LY DW K Sbjct: 244 NSS---GEPER-IAGQKEFTEDVLGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEK 299 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 +WDL+CG+G L A ++ GIE A+ A+++A + ++F + Sbjct: 300 VVWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQ 359 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 GD P +V+++PPR G + + + L + P IIY SC+A T+A+D+ L G+R+ Sbjct: 360 QIGDYPHIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVE 419 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T E + ++ Sbjct: 420 VQPVDMFPWTVSVESIIVMT 439 >UniRef50_C4GBP4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBP4_9FIRM Length = 532 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 160/448 (35%), Gaps = 78/448 (17%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG-----PEQGFRN 57 C + C C + P +Q K +++L+ E G Q +RN Sbjct: 84 CPHF--AECGGCSYQNLPYEDQRKLKEDQIRHLMQPLFGEGVDRIFEGVTASPAHQEYRN 141 Query: 58 KAKMVVSGSVEKPLLG-MLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPY 113 K + + L +H+ G+ D+ C + + F L Y Sbjct: 142 KMEFSFGDQTKGGQLALGMHKRGSFYDIVTVDQCRIISQDMRDLLRLTLDFFTERRLGFY 201 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSD---------TKLAQLRKALPW-----LH 159 + G L+++L+ +Q G +M+ V +D T+ + + W H Sbjct: 202 HKICHEGYLRHLLVRRAQRTGMLMVDLVTSTDRVDREGRPFTEEEEKKLLGDWKQLLLSH 261 Query: 160 EQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 +L I +E + L + L E + I P SFFQTN A Sbjct: 262 NWSDELAGILHTQNDSPADAIEDQGTELLYGRDFLTEEILGLRFDITPFSFFQTNSPGAE 321 Query: 220 QLYATARDW--------------------------------------------------- 228 LY T R++ Sbjct: 322 VLYETVREFIGGDEKGRENIDLSTVLSLPEGADKEQEQSHSDGEAKKRDHFDGQEKNRNN 381 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + + K ++DL+ G G A + G+EI EA+A A+ +A + GL +F A Sbjct: 382 LDCIKGKTVFDLYSGTGTIAQILAPAAGHVIGVEIVEEAVAAARANAKKNGLDNCEFIAG 441 Query: 289 DSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 D + D P+ ++++PPR GI D + +IY SC ++ +D+ L Sbjct: 442 DVLKVIDDIEDKPDFIVLDPPRDGIHPKALDKIIDYGVESMIYISCKPTSLVRDLEILMA 501 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + R++ DMFP T H E + L+ + Sbjct: 502 RGYEVRRMRGVDMFPATGHVECIALIQR 529 >UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU9_9FIRM Length = 441 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS-GPEQGFRNKAKM 61 C D C C + +++ K L NLL + + S G + +RNK + Sbjct: 66 CPHTD---CGGCTYDGFSYDKEIEYKEKLLNNLLHEELNLDNIKIYSAGIFENYRNKMEF 122 Query: 62 VVSGSVEK-PLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + PL LH+ ++ + C + F + + F +N Sbjct: 123 TFGDTYKGSPLALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDK--AFFNRRS 180 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-PQLKVITVNIQPVH 176 G L+++ + + G +++ V D L L +L Q+K I I Sbjct: 181 HEGTLRHLAIRRTNY-GEILVNIVTTKDNDLDLKSYVDELLSLKLEAQIKGICHTINDSQ 239 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + E L + + E + I SFFQTN A+ LY A D + L K Sbjct: 240 GDAIIKEDFHILYGRDYVIEELLGLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKK 299 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG G A + G+EI EA+ A+++A ++ + F A D + Sbjct: 300 VLDLYCGTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKVVND 359 Query: 297 QGDVPELVLVNPPRRGI-GKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 ++++++PPR GI D + +P +Y SCN + KD++ G+++++ Sbjct: 360 LDIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIERGYKLKK 419 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 + D FP T + E+++LL K Sbjct: 420 IVGLDQFPRTVNLELISLLEK 440 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 19/380 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV-EEWCAPVSGPEQG--FRNKA 59 C ++ C C + P Q K +LK L + P+ + +RN Sbjct: 65 CPIWK--ECGGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSC 122 Query: 60 KMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 K+ + GM RD + + C ++ A+ + L Y+ +K Sbjct: 123 KLPFGEEYGELYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYDDKKK 182 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G + +++ E D + + FV + + + L + I +++ Sbjct: 183 TGY-RTLVMKE--FDSKIQIIFVTGKENLSEEFIHDVTQLE----GVVSIWQSVKTETKR 235 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G+ ++ ++ + + D+ L + P+SFFQ N + LY +DW+ + K Sbjct: 236 EVFGD-MRFIWGEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPR--SKTTV 292 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--A 296 + + G+G L ++ G+E +A+ A ++A + F D+ Sbjct: 293 EAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLV 352 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQ 355 Q + ++V+PPR G+ + + + + +IY SCN T+AKD+ L +RI ++Q Sbjct: 353 QEKDVDTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQ 412 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMF T H E +TLLV+ Sbjct: 413 PVDMFSQTPHVESVTLLVRN 432 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 164/384 (42%), Gaps = 24/384 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPV--SGPEQGFRNK 58 +C ++ RC CQ Q + K A ++ + +E P+ S +RN+ Sbjct: 78 RCPVF--ARCGGCQVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQ 135 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 +M V + + M + D+ C L P + V + F+ G T Sbjct: 136 VQMPVRWNATAQRVEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTA--- 192 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + ++++ +S + G M + F L +D +++++ H PQ+ + V +QP Sbjct: 193 ----QFVHHVIVRQSHATGDMAVVFALATDD--PSVKRSVGRFHA--PQVVQVAVTVQPR 244 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G+ + L E + + P+SF Q +A ++Y V Sbjct: 245 AHGPVWGDGAEVMKGGSHLEENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETD 304 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA- 294 + D +CG+G L A+ + G+E +AIA A+ +A + +F ++ Sbjct: 305 VVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANAKLNRVRNAEFVVDRVERWLP 364 Query: 295 --TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 G+ ++++ +PPR+G+ + + + ++Y SCN T+ +D+R L GF Sbjct: 365 RFVEAGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFY 424 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + +Q FDMFP T+H E + + + Sbjct: 425 VTDIQPFDMFPQTSHVECVVTMRR 448 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 96/384 (25%), Positives = 173/384 (45%), Gaps = 20/384 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQ--GFRN 57 +C ++ A C+ C ++ P QL K + LK L + V G E+ G+RN Sbjct: 64 KCFVHHA--CKGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRN 121 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + K+ VS + E L + + ++ C ++ + + + R G+ PYN Sbjct: 122 QCKLPVSLNKEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNH 181 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 K G ++ +++ DG V D L + + + + +I V Sbjct: 182 HTKSG-IRSLVVR--GFDGKYQCTLVTGHDELSCSLIEDILHIRGMY----SLWQSIHTV 234 Query: 176 H-MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 A + G+ ++L ++ L F+ + L + P+SFFQ N A A LY T V+ Sbjct: 235 KNTAEVFGKQMVHLGGEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHK- 293 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 K + + + G+G L+ ++ GIE +A+ A Q+A ++F D+ Sbjct: 294 KRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKL 353 Query: 295 T--AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRI 351 T ++ ++++V+PPR G+ + + L + IIY SCN T+ K++ L +R+ Sbjct: 354 TYLSKNKEIDVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRV 413 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 +RV DMFP+T H E + LL + Sbjct: 414 QRVIPIDMFPNTQHVETVVLLSHK 437 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 77/374 (20%), Positives = 153/374 (40%), Gaps = 11/374 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAP--VSGPEQGFRNKAKMVVS 64 A C C Q++ K + L +E P ++ +RNKA + + Sbjct: 76 AKDCGGCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLE 135 Query: 65 GSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + L +R + ++ +CPL + +K + + ++ G + Sbjct: 136 QTSSGWLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPI-DIHSLNG-I 193 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +++ L +++ V S ++ + K ++ PQ+ + +N+QP + G Sbjct: 194 RHLCLKVGILTNEIIITLV-SSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIG 252 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + + + L ERF ++ L I +FFQ N A + + + D + Sbjct: 253 SSTKTIAGRPWLIERFCNLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYS 312 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG L A + G+E+ ++ A+ +A +T +F+ +D + + Sbjct: 313 GVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEALALHLPSSD 372 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDM 359 ++V+PPR+G+ + + +Y SCN T+A+D+R L ++ +Q D Sbjct: 373 ALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGNIKVTFIQPIDF 432 Query: 360 FPHTAHYEVLTLLV 373 FP T H E LT+L Sbjct: 433 FPKTTHVECLTILE 446 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 324 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 133/378 (35%), Gaps = 64/378 (16%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGP-EQGFRNK 58 C + G C CQW QL K A ++ L F V P G+RN Sbjct: 80 CPYF--GICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNH 137 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 A+ V G + + C + + V L+ Sbjct: 138 ARFSVDGKGNLGYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQE--------------- 182 Query: 119 RGELKY-ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 R +K+ +++ + G +++ P + I I Sbjct: 183 RAHVKHQLMVRYGVNTGELLVH-----------------------PDVSAIDPTIPS--- 216 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 Q A E I SFFQTN AVA +L + + + + Sbjct: 217 ------------GQPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVV 264 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D + GVG F A ++ GIE + A++ A+ + +++ Sbjct: 265 VDAYAGVGTFAAFLAPRVARVIGIEESPSAVSDAQVNLD--PFDNVEYVQAKVEHVLGKL 322 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 P++V+++PPR G + + P +IY SC+ T+A+D+R+L G+R+ V Sbjct: 323 AVRPDVVILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVT 382 Query: 356 LFDMFPHTAHYEVLTLLV 373 DMFP T H E + L Sbjct: 383 PLDMFPQTYHIESVATLE 400 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 154/379 (40%), Gaps = 32/379 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAK 60 C + C C + P +Q+ K LK+ L + P Q +R K + Sbjct: 66 CKYFTL--CGGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQ 123 Query: 61 MVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 G G ++ D+ C L F + LK F+ + L+P Sbjct: 124 FKFDGKN----FGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPSQ----- 174 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 ++ S S +++FV ++++A + + +++ + + Sbjct: 175 ------VIVFSNSKNQKLIKFVFPDNSQIANIIPKIEIYKDEIDE--------NIKGIGF 220 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + + L + + E ++ + SFFQ N L V+ K D Sbjct: 221 YDKKKRQLLLGEYVIFETVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVD 280 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-AQG 298 +CGVG F + A ++ GIE EA+ AK + L L+F + + A+ Sbjct: 281 FYCGVGTFSVPLANYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKYAKD 340 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTM-APRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 PE+V+ +PPR G+ K + +S + + + IIY SCN T+A+D+++ GF +V Sbjct: 341 FKPEVVVFDPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVS 400 Query: 356 LFDMFPHTAHYEVLTLLVK 374 + DMFP T H E + +L K Sbjct: 401 MVDMFPQTHHIESVVVLEK 419 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 151/379 (39%), Gaps = 34/379 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-PVEEWCAPVSGPE--QGFRNKA 59 C Y C C + E+L K +K+ + + PV +RNK Sbjct: 65 CPHYY--ECGGCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKV 122 Query: 60 KMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + ++ + R+ + + + C L + A +K L A Sbjct: 123 TWHMAATGKQEPVLGFFREASRQLLPISHCRLISEKMNCLTARVKAL-----LPLIQPAT 177 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 I L ES D ML + ++ L + + + Sbjct: 178 GS----EITLRESSLDHSTMLIWKGLQGWPAPEIWAELSAISDSV--------------- 218 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++E T Y++ Q L ++ V + P +FFQ N A ++ V K + Sbjct: 219 VVIEKNTCHYISGPQRLLDKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLVD-FSGKTV 277 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D FCGVG L+ A ++ G+E AI A+ +A E G+ ++F + Sbjct: 278 LDAFCGVGSIALNLARQAERVIGVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVARI 337 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 + ++++++PPR G K L S ++PR I+Y SCN T+A+D+ G+R +Q Sbjct: 338 DEPIDVIVLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQ 397 Query: 356 LFDMFPHTAHYEVLTLLVK 374 DMFP T H E + L+ + Sbjct: 398 PIDMFPRTYHVETVVLMSR 416 >UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0H1_9FIRM Length = 400 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 56/373 (15%) Query: 58 KAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K K+ +G + DC + A + +K + ++ Y Sbjct: 27 KNKIEAKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGYEEE 86 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-------------- 162 +G L++I L + S G ++L VL L ++ L L Sbjct: 87 TGKGLLRHIFLRKGFSTGEILLCLVLNG-KSLPHGKELWENLQGLLLSAEEGDLQREEDV 145 Query: 163 ---------------------PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDV 201 + + VNI + G + L + ++ ++ ++ Sbjct: 146 SCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIEDKIGEL 205 Query: 202 PLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGI 261 I SF+Q NP ++Y A ++ + +WD +CG+G L A Q+ G+ Sbjct: 206 SFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLAQKAKQVYGL 265 Query: 262 EIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ-----------------GDVPELV 304 EI EAI AK++A + GL +F + + GD+ ++V Sbjct: 266 EIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADCGIGDMVDVV 325 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 ++PPR+G + + ++P+ I+Y SC+ ++A+DI+ L G+ +E+ D FP Sbjct: 326 SLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEKWVGIDNFPR 385 Query: 363 TAHYEVLTLLVKQ 375 T H E + LL K+ Sbjct: 386 TGHVETIALLQKE 398 >UniRef50_A9NFQ7 RNA methyltransferase, TrmA family, putative n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFQ7_ACHLI Length = 380 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 145/363 (39%), Gaps = 12/363 (3%) Query: 18 MQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKMVVSGSVEK----PLL 72 P EQL K +K+L E+ V P +G+R+KA + + L Sbjct: 21 QMPYKEQLQVKEKYIKSLFNR----EFLPIVPNPVPRGYRHKAVLSATNVNVNNNQQIRL 76 Query: 73 GMLHRDGTPEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G+ T L+ VF ++ + + Y ++G +K++++ +S Sbjct: 77 GLFIEGTTKIKPKLGHFLHDKEIDLVFETVEKLLIKYKHKAYAKNYRQGIIKHVMIRKSF 136 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 G +M+ F + + +K + L P +K + NI + E + L + Sbjct: 137 KTGDLMVIFSTQLNN-FPNHKKIVNELIALHPNVKTVIQNIHKKDSKFVLLEEQRILYGK 195 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + + D+ I +F+Q NP LY ++ + D + G+G L Sbjct: 196 GFIIDSIGDIDFKISANAFYQINPMQMFNLYDKVFEFAGIEKTDVVIDAYSGIGTITLLA 255 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 + ++ G+EI + A + +T +F D D + ++++P R Sbjct: 256 SKYAKKVYGLEINPASHKDAIDNKRMNQITNAEFILGDVEHTLENFTDKVDTLIMDPARD 315 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLT 370 G + + P+ I+Y SCN T +D ++L + + ++ FDMF +T H E + Sbjct: 316 GASLKFIQTVLKLKPKKIVYVSCNPDTQERDYKQLRNFYNLTKILPFDMFSYTPHVENIV 375 Query: 371 LLV 373 LL Sbjct: 376 LLE 378 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 319 bits (819), Expect = 9e-86, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 174/381 (45%), Gaps = 34/381 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPEQ--GFRNKA 59 C ++ +C C ++ + L K + N L + + V+ E+ +RN Sbjct: 70 CKYFN--KCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNM 127 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V + +G+ ++ + C + + L F + Sbjct: 128 QFQV----KNGKIGLYMKNSKEIVPIEHCLMQSTNANKTLKILTKF------------KN 171 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 ++K + + + D + ++ S K+ +L L L + + I NI A Sbjct: 172 LEKIKTLGIRTNYKD---QVMLIISSKEKINKLNLILGDLID--ANVVSIYENINNRKNA 226 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 G+ L Q+ L E+ N + + P SFFQ N A LY A ++++ + + Sbjct: 227 H-YGDEFNLLYGQEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIA 285 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA---- 294 DL+ GVG L A+ Q G+EI EAI A+ +A + L + +F S + Sbjct: 286 DLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKL-QARFICGKSEEILEKIQ 344 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIER 353 T + + +LV+PPR+G+ K L DYL+ + I+Y SCN T+A+D++ L +++E+ Sbjct: 345 TDEKIKMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEK 404 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 V++FD+FP+T+H EV+TLL K Sbjct: 405 VEIFDLFPYTSHVEVITLLSK 425 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 95/430 (22%), Positives = 159/430 (36%), Gaps = 62/430 (14%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF----PVEEWCAPVSGPEQG--FR 56 C +D RC C W+ +QL+ K + +++ + +S +Q +R Sbjct: 113 CPHFD--RCGGCTWLDVAYDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYR 170 Query: 57 NKAKMVVS----GSVEKPLLGMLHRDGTPEDLCD-----CPLYPASFAPVFAALKPFI-- 105 NK + + S +P G+ G L + C L V A + Sbjct: 171 NKMEFAFAQVGDNSSGRPAFGLRPA-GDHTGLVEVFTSGCVLQQVVADKVLARCAAHLHA 229 Query: 106 ---ARAGLTPYNVARKRGELKYILLTESQSDG------GMMLRFVLRSDTKLAQLRKALP 156 A L +N G L+ + L + G +M+ D + + +KA Sbjct: 230 MADVSALLPVFNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFA 289 Query: 157 WLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPA 216 L L + + + E + + L ++ V + +SFFQTN Sbjct: 290 ALAADLATIDCVQSVVHERVGDNNENQITV-LHGPATISITLRGVVFALSVKSFFQTNTK 348 Query: 217 VASQLYATARDWVRQLP--VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 A L + + + + DLFCGVG FGL A+ + G EI EA+ AK++ Sbjct: 349 QAEILVESVEEACALTGENTETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRN 408 Query: 275 AAELGLTRLQFQALDSTQFATAQG-----------------DVPELVLVNPPRRGIGKPL 317 A + F D Q + + P++V+V+P R G+ L Sbjct: 409 AVANRIENATFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTL 468 Query: 318 CDYLSTMAPRFIIYSSCNAQTMAKDIR-------------ELPGFRIERVQLFDMFPHTA 364 L ++ I+Y SCN T A+D+ L +R+ D+FPHT Sbjct: 469 VAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTP 528 Query: 365 HYEVLTLLVK 374 H E + +L + Sbjct: 529 HVENIVVLER 538 >UniRef50_C5C7F2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C5C7F2_MICLC Length = 403 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 174/404 (43%), Positives = 229/404 (56%), Gaps = 30/404 (7%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQGFRNK 58 MQC +D G CRSC + P QL+ K A ++ LAD + P + E GFRNK Sbjct: 1 MQCPHFDVGECRSCPLMGVPYARQLADKQAAVQAALADAVDADTVVAEPFASAEAGFRNK 60 Query: 59 AKMVVSGSVEKPLLGM-------LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 AK+VV+GS P LG+ H DG DL DC LY A VF A + AGL Sbjct: 61 AKLVVTGSAAAPRLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAGLE 120 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ----LKV 167 PY+VA + GELK +++T S D M+RFVLRS +L LR A+P L + L V Sbjct: 121 PYDVAARTGELKNVIVTLSP-DREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAV 179 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 ++ N+ P H+A+ EG+ EI L L R N V L +RPQ FFQTN AV LYATA Sbjct: 180 VSANLLPEHVALPEGDKEIVLAGGPTLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAA 239 Query: 228 WVRQLP-VKHMWDLFCGVGGFGLHCATPDMQ-LTGIEIASEAIACAKQSAAELGL-TRLQ 284 WV + WDL+CGVGGF H A ++ + G+E ++EA+A A+++AAELGL R + Sbjct: 240 WVAEAGLPATAWDLYCGVGGFAFHLARAGVRDVWGMESSAEAVAAARETAAELGLADRAR 299 Query: 285 FQALDSTQFA-------------TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 F A D+T + P+ V+VNPPRRGIG L D L ++Y Sbjct: 300 FSAGDATSALSFGKRRAPEALSFEKRRARPDAVVVNPPRRGIGAELADALEDSGVPTVLY 359 Query: 332 SSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 SSCN T+A+D+ +P +R+ RVQ+FDMFP T H EVLTLL ++ Sbjct: 360 SSCNPATLAQDLARMPSYRVARVQVFDMFPQTRHAEVLTLLTRR 403 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 25/385 (6%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQ--GFRNKAKMVVSGS 66 C + M +QL K L+ +L + + + G ++ +RNK Sbjct: 87 GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146 Query: 67 VEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAG-----LTPYNVARKRG 120 G R + L + + +N G Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 LK I++ ++ D +M+ V+ +++ QL K L ++++ +K I ++++ ++ Sbjct: 207 FLKQIMIRNNEKD-EVMIVVVVNKNSQYNQLSKVLEEMYDENDCIKSIYISVKTEQNNVI 265 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV------ 234 G ++L Q L E + I P SFFQ N A +LY A +++ + Sbjct: 266 LG-KNVHLFGSQYLEEEMEGLKFKIYPNSFFQINKKQALKLYDAAINFLNEENKNIDKIY 324 Query: 235 -KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 K + D F G G + + ++ GIE + AK ++ E + ++F + Sbjct: 325 EKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGKVEKE 384 Query: 294 ATAQGDVPEL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 ++ ++ +PPRRGI + + I+Y SCN T A+D++ L G+ Sbjct: 385 LPKILKREDVGAIVFDPPRRGIEESALKSVVKNKIEKIVYISCNPATFARDVKILAENGY 444 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 + +V DMFP T H EV+ ++ + Sbjct: 445 VLRKVAPVDMFPQTGHIEVVGMIQR 469 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 164/367 (44%), Gaps = 13/367 (3%) Query: 15 QWIMQPIPEQLSAKTADLKNLLAD---FPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPL 71 +I ++L K + L +E+ + +RNK ++ ++ E L Sbjct: 76 HFINLKYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNLNYRNKIELKMNEDFE--L 133 Query: 72 LGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 + + L +CPL L+ + + Y+V G LK I + S Sbjct: 134 CYCVDNGESKIKLENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISIR-SN 192 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ V++ D + + + L E +L +NI +I+ G+ + + Sbjct: 193 YKSEIMITVVVKKD--IVEAHNFVKSLSE-YEKLVSGYININTKKASIIMGQEIKLIFLK 249 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 ++ ++ I P+SFFQ N LY A+D++ K++ DL+ G+G ++ Sbjct: 250 KSFTDKIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYF 309 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA--QGDVPELVLVNPP 309 + ++ G+E+ +A+ AK++ + ++F S + + + +++ V+PP Sbjct: 310 SENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEILKNNNIDIISVDPP 369 Query: 310 RRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYE 367 R+G+ K + D + + ++Y SCN T+ +D++ GF +++V+L DMF T H E Sbjct: 370 RKGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKVKLCDMFSKTGHCE 429 Query: 368 VLTLLVK 374 V+ + K Sbjct: 430 VVVEIEK 436 >UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8K4_9ACTN Length = 609 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 98/463 (21%), Positives = 161/463 (34%), Gaps = 98/463 (21%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE------EWCAPVSGP----------- 51 C C+W+ P EQL K ++ L + + + Sbjct: 56 DYC-GCEWLNIPYSEQLMRKNKYMRELFEPLVTQQGKSCADLLRSIVPMKCTKDRAPHNM 114 Query: 52 EQGFRNKAKMVVSGSVE--------------------KPLLGMLHRDGTPEDLCD-CPLY 90 + FR+K + E G CD CP Sbjct: 115 PRCFRHKVATPFAPLPESFASRAPKSNSKVQTNARMSGIACGFFEPGTHHIIPCDFCPSE 174 Query: 91 PASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ 150 + + AR + YN + G L++ +L S+S +ML V R+ AQ Sbjct: 175 VPGARKILNFIAKDAARLNIKAYNENTQIGILRHAILRFSRSCNEIMLVIVTRTRN-FAQ 233 Query: 151 LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSF 210 + + + P + + N+ P + M G + L + ++ I P SF Sbjct: 234 KKLLVQDILSAYPHITTVVQNVNPKNTNAMLGSYNVVLFGSGKIHDKLLGCTFEIGPVSF 293 Query: 211 FQTNPAVASQLYATARDWVR---------------------------------------- 230 FQTNP LY TA D ++ Sbjct: 294 FQTNPEQTEILYQTAIDGIKRICNTGKSDCDTLSYVSHGASIDSKRLDTSGLEHAHGKAQ 353 Query: 231 ----QLPVK---HMWDLFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGL- 280 + K + D +CG G G+ A+ + + G + ++I AK++ L Sbjct: 354 QVTPEQADKHTIRIMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKNRRLNHLK 413 Query: 281 TRLQFQALDSTQFATAQG------DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC 334 TR + D+T+F E ++++PPR G +++ P+ I Y SC Sbjct: 414 TRCVYSCEDATRFMQDFAYASNGVSRFEAIIMDPPRAGSTPEFIKAAASLRPKCIAYISC 473 Query: 335 NAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 N QT +D+ E G+ +E + DMFPHT H E + LL +Q Sbjct: 474 NPQTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQ 516 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 37/381 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + G C CQ + Q +K L ++ E +SGP G+R +A++ Sbjct: 80 RCPHF--GVCGGCQQQHASVALQQRSKAQALCRMMKR----EVDEVISGPAWGYRRRARL 133 Query: 62 VVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ + KP L M R DL D CP+ + L+ L+ + R Sbjct: 134 SLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRD-----CLSSLDGVRH 188 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ + +T G +M+ L L A E + + + + P Sbjct: 189 LGHVELVDVT----SGPLMVL------RHLKPLSAADREKLECFSHSEGVALYLAPQS-- 236 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 +T +L + E + + L P+ F Q N AV Q+ A A +W+ P + + Sbjct: 237 ----DTLEHLNGEMPWYES-DGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVL 291 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 DLFCG+G F L A + G+E + + +A L + F + + T Q Sbjct: 292 DLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQP 351 Query: 298 --GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 + VL++P R G + ++ + PR ++Y SCN T+ +D L G+R R Sbjct: 352 WAQQGFDKVLLDPARAGAA-GVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVR 410 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT H E + L + Sbjct: 411 LAMLDMFPHTGHLESMALFER 431 >UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK1_ACHLI Length = 460 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 143/373 (38%), Gaps = 12/373 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGP--EQGFRNKAKMVVS 64 C + + L K L N L + ++ G G+RNK + V Sbjct: 82 CGAYSMQHVTYEKSLQIKRDILINALNRYVDKKIVYSKIKQTIGMNEPLGYRNKVSLPVR 141 Query: 65 GSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 K G+ + G + D P++ + ++ + + Y K G +K Sbjct: 142 KLEGKNKFGLYAKGGNEFIPVNDTPVHQPRINEIIQIVETLMDQHKFHAYIQKDKSGYMK 201 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME-G 182 +++ S + G + + F+L K + K L Q P + + + + Sbjct: 202 SMVIRRSYTTGEVQVSFLLMK--KFEGIAKFTEALVAQCPDIVSVFAFYTDKYKEQIFFT 259 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 L + + E+ N + P++FFQ N +A + Y R+ P + D + Sbjct: 260 NNYENLFGKATINEKINHQTFSLYPEAFFQLNTVMADKFYNKMRELANLQPTDVVIDAYA 319 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FATAQGDVP 301 G + A ++ IEI ++ A S + + D + + D Sbjct: 320 GSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQSDFKKALKNLEVDTI 379 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE-LPGFRIERVQLFDMF 360 + + +PPR G+G + P+ +IY SCN T+AKD+ + L + ++ + DMF Sbjct: 380 DAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPSTLAKDLEDLLKTYELKSLIPMDMF 439 Query: 361 PHTAHYEVLTLLV 373 P+T E ++LL Sbjct: 440 PYTPLVESVSLLE 452 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 157/387 (40%), Gaps = 33/387 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQ-GFRNK 58 C A C C Q+ K L+ A F E+W AP+ P+ G+R K Sbjct: 78 CEF--ADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRK 135 Query: 59 AKMVVSGSV--EKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V E L+G + + D+ C + L+ + G+ ++ Sbjct: 136 ARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELL--HGMAAFDR 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + + + M+ R D + R+ L Q + + +QP Sbjct: 194 ------IAQVEVACGDDTAAMVFR---NMDDLVPDDREKLIA----FGQAHDLHIYLQPK 240 Query: 176 -HMAIMEGETEIYLTEQQALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + E + + L R + D+ + P F Q N + + A +W+ Sbjct: 241 GPDTVHRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQ 300 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 P + + DLFCG+G F L A Q+ G+E + +++A L+ ++F D Sbjct: 301 PGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHG 360 Query: 293 FATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--P 347 T Q + + +L++PPR G + +C YL+ I+Y SCN T+A+D + Sbjct: 361 DFTGQSWAKEGFDKILIDPPRSGA-EEICKYLTAFGANRIVYVSCNPATLARDAGVMVRN 419 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+ + + DMFPHT H E + L + Sbjct: 420 GYRLVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EN78_9LACO Length = 465 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 75/367 (20%), Positives = 145/367 (39%), Gaps = 10/367 (2%) Query: 16 WIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGP-EQGFRNKAKMVVSGSVEKPLL 72 +QL K +K LL + +E + P +G+RN+ + V + + Sbjct: 97 LANLKYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPLTKGYRNEIVLPVREVKGQLEV 156 Query: 73 GMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R G L + + A++ + + + Y+ G ++ I + SQ Sbjct: 157 GFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKVPAYDPNTNSGFIRDIDVRRSQ 216 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 GM++ + + ++ L + + + E+L + + +N P + G++ I L Sbjct: 217 GKKGMIVTLITHENDRV-DLPEIVGLITEKLHNVNGVVLNYNPHKTDEIFGKSNIPLWGN 275 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + + + + I P+S+FQ N + + A + + D FCGVG GL Sbjct: 276 DYVEDELDGIQFKISPKSYFQANGSQLKPITDLALSLLDLKDTDKLIDAFCGVGTVGLLA 335 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE---LVLVNP 308 A + GI+ +I A+++A + + Q + E +++ P Sbjct: 336 AKKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVEQVLSRFAKNDEKGTVIMATP 395 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHY 366 P +G+ D + M PR I+Y S N TM +D+ G+ + D P T Sbjct: 396 PAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDLACFKKKGYTCTEITPIDTAPQTPEV 455 Query: 367 EVLTLLV 373 + +LV Sbjct: 456 KCFGVLV 462 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 158/395 (40%), Gaps = 33/395 (8%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA------PVSGPEQGFRNKAKMVVS-- 64 +I PI Q K +L E S +RNK + S Sbjct: 89 GAPYIQLPIELQHKYKKESTLSLFKKIGKVENIDALFDEFVTSPNVFHYRNKMEYGFSAI 148 Query: 65 ------GSVEKPLLGMLHRDGTP---EDLC-DCPLYPASFAPVFAALKPFIARAGLTPYN 114 + R G +DL D L+ +K + GL P++ Sbjct: 149 GYDRITKRDKDEFTLGFKRRGVWWMGDDLNKDSGLFDKQMEDHLKNIKQYCIETGLDPWH 208 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRS-DTKLAQLRKALPWLHEQL-PQLKVITVNI 172 ++ G +Y ++ +S ++ V S + + L K +L + +L + I Sbjct: 209 GPKREGFFRYFVVRKSFKTDELLCNLVTTSPELEKFDLNKFADFLKDIFGKRLAGLLHTI 268 Query: 173 QPV--HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 I + + + + E+ + I +SFFQTNP A +LY ++V Sbjct: 269 NDETGDRTIATSGSLNLVYGKDKIVEQLLGLDFEISMKSFFQTNPKCAEKLYNKVVEYVL 328 Query: 231 QLPVKH----MWDLFCGVGGFGLHCATPDM--QLTGIEIASEAIACAKQSAAELGLTRLQ 284 + K + DLFCG G G A+ Q+ G++I + AI A+++A +T +Q Sbjct: 329 EDKTKVDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVDIVASAIEDAEKNAKRNNITGVQ 388 Query: 285 FQALDSTQFATAQGDVPE---LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 F A D +F T+ + ++++P R GI + + ++Y SCN T A+ Sbjct: 389 FFAADVGKFLTSHPEYENKIKTIILDPARAGIAPKTLQKIINLNADRMVYVSCNPATQAR 448 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D L G+ I+++ L D FPHTAH E + L K Sbjct: 449 DTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEK 483 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 159/382 (41%), Gaps = 33/382 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C +D +C C I Q K L +L+ F E CAP+SG +R +A Sbjct: 83 CPHFD--KCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRA 140 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ + + R + D+ + C + + + L + + Sbjct: 141 RLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQL-------- 192 Query: 117 RKRGELKYILLTESQSDGGMMLRFV-LRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + L ++ LT++ + ++LR + SD A+L + ++ + Sbjct: 193 SGKKALGHVELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHE------VIVLLQDDDA 246 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G EQ A +D+ L P +F Q N V + + A +W+ + Sbjct: 247 QCEHLNGA-----GEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGE 301 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DLFCG+G F L A ++ G+E + A+ +A + GL ++ F D + + Sbjct: 302 RVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADLS 361 Query: 296 AQGD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPGFRI 351 + + +L++P R G + L + P+ ++Y SCN ++A+D + G+++ Sbjct: 362 KEPWLGKVDKMLIDPARAGAYES-MQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQL 420 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 +++ L DMFP T H E + L Sbjct: 421 KKIGLIDMFPQTHHLESMALFE 442 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 149/386 (38%), Gaps = 35/386 (9%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPVSGP--EQGFRNKAKMV 62 C C W QL AK A++ L EE P + G+RNK ++ Sbjct: 88 CGGCPWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQWGYRNKLELG 147 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 + HR+G D+ CPL + A AL+ + A + Sbjct: 148 AAMDERGTFQLGFHREGAH-DIASPGACPLAHDAIAKAPKALRGALRFAQGSA-----DL 201 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G + + + S G + + S + + + ++ V P Sbjct: 202 GIFR-VGVRHSLHTGDLEVAL-WTSPGSFPRG-HIAKTVKSAVKATSIVRVMADPGKARK 258 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH--- 236 ++G L + E+ D SFFQ N A A +L A + + + Sbjct: 259 IKGVET--LDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGEDGPE 316 Query: 237 ------MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + DL+ G G F + A ++ +E A ++ +++A + L+ D+ Sbjct: 317 GLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD-LEVIGGDA 375 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PG 348 + G + + ++V+PPR G+ + + ++ AP + Y SCN T A+D+ G Sbjct: 376 ARELPELGGL-DALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQG 434 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ VQ DMFP T H EV+++ + Sbjct: 435 YRLTSVQPVDMFPQTYHVEVVSVFER 460 >UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJZ3_9BACT Length = 409 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 163/380 (42%), Gaps = 15/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNL------LADFPVEEWCAPVSGPEQGFR 56 C ++ C C +QL K L+ L ++ E A S + +R Sbjct: 36 CQHFE--ECGGCSLQQHSYEQQLEIKKQALERLVRETPGMSSLAKLEVEAVASARDYKYR 93 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + +V+ + +L +C L ++A GL Y+ Sbjct: 94 QRMDFIVTPEGSGQRRCDGQKG--IVELNECSLVEDENYAIYAKTLGLSREVGLEAYDQN 151 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + G L+YI++ ++S G ++ + S A+L + L ++ ++ + N+ Sbjct: 152 KYYGCLRYIIIRRTRS-GQQLVSLLTTSSADEAKLEQIAQKLLDE--GVQSVYWNVNDNR 208 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + GE + Q+ + E + P +FFQ N VAS Y + R+++++ K Sbjct: 209 LDDSLGECRKF-WGQEFITENLLGRDFILGPLTFFQANHDVASAAYTSVRNFIKECQPKK 267 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+ G + +T +E E + A+++ G+ ++F D +F Sbjct: 268 IHDLYSGTCTMPVIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDVAEFLKQ 327 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQ 355 E ++NPPR+G+ + + +AP + Y SC+ +++ +D+ L ++ ++Q Sbjct: 328 SDLEMEFSVLNPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREYKPLKIQ 387 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 LFDMFP T H+E L LL K+ Sbjct: 388 LFDMFPQTEHFETLVLLTKK 407 >UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS Length = 631 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 84/417 (20%), Positives = 159/417 (38%), Gaps = 55/417 (13%) Query: 14 CQWIMQPIPEQLSAKTADLKNLLADFPVE---------------EWCAPVSGPE-QGFRN 57 C +QL K+ ++ LL + E ++ + P G+RN Sbjct: 158 CPLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRN 217 Query: 58 KAKMVVSGSVEKPLLGML----HRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 K + V + E ++ + DG+ E ++ D P P + + + ++ Sbjct: 218 KNEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQ 277 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRS----DTKLAQLRKALPWLHEQLPQLKV 167 P+N G + +++ S + G +ML + S + + +L++ L +E + Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQDD 337 Query: 168 ITVNIQPVHMAIMEGETE-------IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 T ++ ++ ++ + + + I P +FFQ N A+ Sbjct: 338 ATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTIQGLQFRISPLAFFQINTEGANV 397 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY A D V M D+ CG G L A ++ G+EI +AI A+ +A G+ Sbjct: 398 LYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGI 457 Query: 281 TRLQFQALDSTQFATAQ-----------GDVPELVLVNPPRRGIGKPLCDYLS-TMAPRF 328 +F ++ F + V + +V+PPR G+ + A Sbjct: 458 KNCKFFTGNADDFIKSMVREAMYEQEPGKPVDLIAVVDPPRAGLHNRSIAAIRSASAINR 517 Query: 329 IIYSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++Y SCN + ++ EL F + DMFPHT H E++ L ++ Sbjct: 518 LVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 574 >UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgroup RepID=B5RIS0_DROME Length = 640 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 86/415 (20%), Positives = 161/415 (38%), Gaps = 53/415 (12%) Query: 14 CQWIMQPIPEQLSAKTADLKNLLADFPVE---------------EWCAPVSGPE-QGFRN 57 C +Q+ K+ ++ LLA + E ++ + P G+RN Sbjct: 190 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 249 Query: 58 KAKMVVS-GSVEKPLLGML---HRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 K + V SV + ++G + DG+ E ++ D P P + + + ++ Sbjct: 250 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 309 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRS----DTKLAQLRKALPWLHEQLPQ--- 164 P+N G + +++ S + G +ML + S + + +L++ L +E L Sbjct: 310 PFNPDGNIGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDAP 369 Query: 165 --LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 + A +++ + + + I P +FFQ N A+ LY Sbjct: 370 YKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANVLY 429 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 A D V M D+ CG G L A ++ G+EI +AI A+ +A G+ Sbjct: 430 QKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKN 489 Query: 283 LQFQALDSTQFATAQ-----------GDVPELVLVNPPRRGIGKPLCDYLSTM-APRFII 330 +F ++ F + + + +V+PPR G+ + + A ++ Sbjct: 490 AKFFTGNADDFIKSMVREALYDQEPGKPLDLIAVVDPPRAGLHHRSIAAIRSADAINRLV 549 Query: 331 YSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SCN + ++ EL F + DMFPHT H E++ L ++ Sbjct: 550 YVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFERE 604 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 34/383 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKAK 60 C ++ +C C Q+ K+ L +L++ + E P+ G E G+R +A+ Sbjct: 82 CKHFN--QCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRAR 139 Query: 61 MVVSGSVEKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + LL R E++ DC + + LK + N Sbjct: 140 ISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLL--------NTFS 191 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 L ++ L G +M+ L L+ + + L L + Sbjct: 192 SLTSLGHVELVLGD-TGPVMV---------LRHLKPLVEKDEQALMTLMTLAKEEGATLY 241 Query: 178 AIMEGETEIYLTEQ-QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ E + + L + +E V L P F Q N V Q+ A A +W+ + Sbjct: 242 SMPETDKLVRLVGDAPSYSET--GVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADER 299 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLFCG+G F L A + G+E E + A +AA L+ +F + + ++ Sbjct: 300 VLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSS 359 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 Q + + VL++P R G + D +S + + ++Y SCN T+A+D L G+++ Sbjct: 360 QLWAKEKFDKVLLDPARAGAS-GIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQL 418 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 ++ + DMFPHT+H E + L +K Sbjct: 419 AKLGMLDMFPHTSHLESMALFIK 441 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C ++ C C + +QLSAK L+ L + + +S G+R +A++ Sbjct: 86 CQHFNL--CGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLA 143 Query: 63 VSGSVEKPLLGMLHRDGTPED-LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + + +LG + + C + + F LK + L G Sbjct: 144 IDIKKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLENDLA--------GV 195 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L ++ L E + R +L E + + + Q + Sbjct: 196 LGHVELLEDTKGVSALFRLTSPISDELKNAW-------EDWAEKGRVALYWQAPKV---- 244 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ E+ L + + D+ L PQ F Q N A+ ++ A DW+ + DLF Sbjct: 245 GKAEVALEKMRYY--DLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLF 302 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CGVG F L A + G+E+ + A+++A G L F A D T+ + Sbjct: 303 CGVGNFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELFKQ 362 Query: 302 EL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 + VL++PPR G + D + + P I+Y SCNA T+A+D L G+R+ RV L Sbjct: 363 TITKVLLDPPRAGAFE-FLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLM 421 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFP T+H E + LL K+ Sbjct: 422 DMFPQTSHVETMMLLQKK 439 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 158/365 (43%), Gaps = 18/365 (4%) Query: 19 QPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQG--FRNKAKMVVSGSVEKPLLGM 74 +QL+ K L L + W ++ E +RN+ K+ + K + G+ Sbjct: 78 IEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQERQGKLVCGL 137 Query: 75 LHRDGTPEDLCDCPL-YPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSD 133 + + L + + L + + Y+ K+G L+YI++ Sbjct: 138 FSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQG-LRYIVIRC--IH 194 Query: 134 GGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI-MEGETEIYLTEQQ 192 G + DT L K L +++P L + + ++ GE L ++ Sbjct: 195 GISQATLITGKDT----LNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFFGERTKLLFGKK 250 Query: 193 ALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 L F+ + L + P++FFQ N A LY A V P + + +CG+G L + Sbjct: 251 HLLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVD--PCHILVEAYCGIGVMSLLAS 308 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--FATAQGDVPELVLVNPPR 310 + Q+ GIE+ AI AK++A L F+ D+ + A+ + +L++PPR Sbjct: 309 SKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAKKQKIDTLLIDPPR 368 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFPHTAHYEVL 369 G+ + + + + P IIY SCN T+AK+I L ++I +Q FD+FP T H E L Sbjct: 369 SGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTIQAFDLFPQTPHVECL 428 Query: 370 TLLVK 374 LL K Sbjct: 429 CLLSK 433 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 149/387 (38%), Gaps = 33/387 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C Y C C EQ+ K + L +LL+ + + +P++ +RNK Sbjct: 76 KCPHYQM--CGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNK 133 Query: 59 AKMVVSGSVEKP--LLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 A++ +K ++G R+ ++ CP+ + L+ I + Sbjct: 134 ARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLI--------D 185 Query: 115 VARKRGELKYILLTESQSDGGMMLR-FVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + + I + ++ ++ R ++ +++RK + + + Sbjct: 186 TMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYK------VFLQPG 239 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + ++ + L + + P F Q N + ++ A + Sbjct: 240 GLDSVFCFYPSDAHAYLSYELPDY--QITFQFHPNDFTQVNAELNRKMVKQAIQLMELKN 297 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + DLFCG+G F L A ++ G+E + A +A +T + F A + Sbjct: 298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDV 357 Query: 294 ATAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---P 347 + V VL++PPR G + + ++ P I+Y SCN T+A+D L Sbjct: 358 MEVRNLVNTSFSKVLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQK 416 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + + DMFPHTAH E + L K Sbjct: 417 GYVLITAGVMDMFPHTAHVESIALFQK 443 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 40/397 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC------APVSGPEQGFR 56 C Y G C C + Q + K L L+ F AP+ P +R Sbjct: 83 CPHY--GHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYR 140 Query: 57 NKAKMV--VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +A++ + + + LG + CP+ + + +AR Sbjct: 141 RRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKA- 199 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ-----LPQLKVI 168 L ++ LT Q+D G + A +R + Q L Sbjct: 200 -------SLGHLELT--QADNGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGA 250 Query: 169 TVNIQPVHMAIMEGETEI---YLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 ++ + A EG T++ LT + + V P +F Q N V ++ A Sbjct: 251 LTDVMTMAPAEDEGATQVEQSALTLPEYALSQ-GQVSCQFTPGNFVQVNAEVNQRMVEQA 309 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGLHCATPDM-----QLTGIEIASEAIACAKQSAAELGL 280 +W+ + + DLFCGVG F L A ++ G+E E + A+++A L Sbjct: 310 VNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNL 369 Query: 281 TRLQFQALDSTQFATAQGD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 L F D + + + + +L++P R G + +L M P+ ++Y SCN + Sbjct: 370 ANLSFYHADLSADLSNEKWLGKIDKLLLDPARAGAFES-LQWLQKMKPKKVVYVSCNPAS 428 Query: 339 MAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 +A+D L G++++++ + DMFP T H E + L Sbjct: 429 LARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 159/405 (39%), Gaps = 55/405 (13%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNKA 59 C + G C C Q++ K + L +L A+ + W PV G G+R KA Sbjct: 128 CPHF--GVCGGCNLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKA 185 Query: 60 KMVVSGSVEKP--LLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V V+K L+G R +L +C + LK I+ Sbjct: 186 RLGVRYVVKKETALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLD------- 238 Query: 117 RKRGELKYILLTESQS-----DGGMMLRFVLR-----SDTKLAQLRKALPWLHEQLPQLK 166 R ++ + L + DG + ++R SD + +L+ + QL Sbjct: 239 -SRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDGDIDKLKVFFAARNWQL---- 293 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFN---------DVPLWIRPQSFFQTNPAV 217 +Q + I L + L+E+F D+ P F Q N +V Sbjct: 294 ----YLQSKGADSI---QRIALRDTDDLSEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSV 346 Query: 218 ASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ---LTGIEIASEAIACAKQS 274 Q+ A D + + + DLF G+G F L A + + G+E + A A + Sbjct: 347 NRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTARAADN 406 Query: 275 AAELGLTRLQFQALDSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 A G+ +F + D T T + + +L++PPR G + + YL I+Y Sbjct: 407 ARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWE-IMQYLPKFNAERIVY 465 Query: 332 SSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 SCN T+A+D + L G+R+ + DMF HT H E + K Sbjct: 466 VSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEK 510 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 34/383 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNKA 59 C Y G+C C EQ+ AK + + + L F E P+SG +Q +R Sbjct: 90 CQYY--GQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSC 147 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ ++ P++G R + + +CP+ + LK ++ A Sbjct: 148 RIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCK---- 203 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 E+ + L+ G M LR L ++L ++L + + Sbjct: 204 ----EITHAELSMGDQQGAMTLRI-------KKPLPESLSSSLQKLAEDNEFRLYFDNGQ 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 G+ + + + +P F Q N +V +Q+ A DW+ Sbjct: 253 QINAFGDEADLSYQLEKSETQIG-----FKPGDFIQVNASVNTQMINRAMDWLDLKDNDR 307 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLF GVG F L AT + G+E + + A+ +A + GL +F D ++ A Sbjct: 308 VLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKA 367 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +L++PPR G + L I+Y SCN +A+D EL G++ Sbjct: 368 LPWYKQGFSKILIDPPRTGA-LEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKA 426 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT+H E L L K Sbjct: 427 SKFCVMDMFPHTSHVESLVLFEK 449 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 303 bits (776), Expect = 9e-81, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 141/385 (36%), Gaps = 25/385 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP------VEEWCAPV--SGPEQG 54 C G C C W QL+AK +L++ L V+E P+ + + G Sbjct: 71 CPF--VGICGGCSWGNLSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWG 128 Query: 55 FRNKAKMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RNK ++ + + LGM D + CPL+ F ++ + Y Sbjct: 129 YRNKIELEPTVVNGRVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGALN------Y 182 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 L+ + + S+ + + + + R + + I + Sbjct: 183 LSGSHNLGLERVGIRASRRTKALEVALWTPTGSFP---RSQVSRVLADAAHPTSIVRVMS 239 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 L + + E + + + SFFQ N A L + + Sbjct: 240 KGEKKARRVSKVEMLAGEGSWTENIAEGQMRLSAPSFFQVNTKGAEILIELVMEALDPQE 299 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + DL+CG G F L A + +E A+ +++ L + D+ + Sbjct: 300 DELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDAVRE 359 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFR 350 Q ++++V+PPR G+ D +++ + + Y SC+ T+A+D++ F Sbjct: 360 FPDQD--ADVLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFS 417 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ D+FP T H E + L + Sbjct: 418 PVKITPVDLFPQTFHCETVVHLKRN 442 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 105/384 (27%), Positives = 163/384 (42%), Gaps = 39/384 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGPEQGFRNKA 59 C AGRC C P EQL+ K L L+ EEW AP++GPE G+R +A Sbjct: 91 CQH--AGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRA 148 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + L + R +D+ +CP+ P+ L + R Sbjct: 149 RIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRL-------- 200 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 K L ++ L S ++ S+ L L+ + QL Sbjct: 201 SKPQALGHVELFSGSSLAVLLRHMAPLSEADLTILKDFCAFHEAQL-------------- 246 Query: 177 MAIMEGETEIYLTEQQALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 EGE + + Q+L D+ L RP F Q N V + A A +W++ Sbjct: 247 WLHGEGE-PQPVDDAQSLGYHLEQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTAD 305 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + DLFCG+G F L A ++ +E + A +AA L +F D +Q Sbjct: 306 ERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPL 365 Query: 295 TA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 T G+ VL++PPR G + + L+ + + ++Y SCN T+A+D EL G+ Sbjct: 366 TDAEWIGNGFSAVLLDPPRDGAFE-VVRKLAALGAKRLVYVSCNPATLARDTVELIKQGY 424 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 R++R + DMFP TAH E + L Sbjct: 425 RLKRAGILDMFPQTAHVEAMALFE 448 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 145/376 (38%), Gaps = 25/376 (6%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFP------VEEWCAPVSGP--EQGFRNKAKMVV 63 + W +QL K + + L V E + P G+RNK ++ Sbjct: 77 GATPWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAF 136 Query: 64 SGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + K L+GM +G + DCPL S A+ ++ Y ++ Sbjct: 137 KRNGNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALS------YLSGSHELDV 190 Query: 123 KYILLTESQSDGGMMLRFVLR-SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 + I + S+ + + S AQ+ + L + ++V+T P + Sbjct: 191 ERIGIRVSRRTKELEVALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKG--PSKARRVV 248 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G L+ + +E + + + SFFQ N A +L + P DL+ Sbjct: 249 GVER--LSGSGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLY 306 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG G F L A ++ +E A+ +++ L + D+ + Sbjct: 307 CGAGTFTLPLAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDAGREFPDTD--A 364 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 ++++V+PPR G+ + LS R I Y SC+ T+A+D++ ++ V D Sbjct: 365 DVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVD 424 Query: 359 MFPHTAHYEVLTLLVK 374 +FP T H E + LL + Sbjct: 425 LFPQTFHVENVCLLKR 440 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 147/384 (38%), Gaps = 25/384 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGP-EQGFRNK 58 C L+ G C C W QL K + L A P E V+ P G+R++ Sbjct: 72 CPLF--GSCGGCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSR 129 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPED--LCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + G+ +G + + CP+ + +L+ L + Sbjct: 130 VQFKLHGAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREM-----LPAFPDP 184 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 K + I L ++ +++ ++ + QL Q + + Sbjct: 185 TK---IPQINLECAEKGAVVIVNYI---GDDHQGAKAFFRERAAQLEQATALYLQTGRKS 238 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ Q+ + L RP F Q N A S L R++ Sbjct: 239 TLQKVFGDDLLQYSQEGESSTAPACSLTYRPGGFAQVNAAQNSALLRLVREFADCRRDDQ 298 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 + DL+CG G F L A +TGIE ++IA A+ +A G+T ++F D+ Sbjct: 299 ILDLYCGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGK 358 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 G ++++PPR G L +++ + IIY SC+ T+A+D L G+ + Sbjct: 359 LMGDGRRFPTIILDPPRSGAA-DLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTV 417 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 DMFP T H E +TLL ++ Sbjct: 418 VSSVPVDMFPQTFHLESVTLLRRR 441 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 161/385 (41%), Gaps = 37/385 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV---SGPEQGFRNKA 59 C + +C C M P Q AK ++ L + AP+ S Q +R Sbjct: 81 CPAFK--QCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVC 138 Query: 60 KMVVSGSVEKP--LLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V K L+G + ++ CP+ A+ + + L+ I N Sbjct: 139 RLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALIVPLRTLI--------NEL 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ +I L E++S M+LR R K +L A H+ + +Q Sbjct: 191 SSARDVGHIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHD-------CALYLQTT- 242 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 L + + + + + L+ +P F Q NP V +L R+W+ + Sbjct: 243 ------GYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDN 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT- 295 + DLFCG+G F L A +TGIE E + A +A + L F D T+ A Sbjct: 297 VLDLFCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEY 356 Query: 296 ----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 Q +LVL++P R G + + +L+ R I+Y SCN T A+D L PG+ Sbjct: 357 ANAGWQQQCYDLVLLDPGRTGA-EAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYT 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 +++ L DMFPHT H E L L ++ Sbjct: 416 LKQWGLLDMFPHTGHVESLFLFERK 440 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 84/382 (21%), Positives = 148/382 (38%), Gaps = 37/382 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGPEQGFRNK 58 C + C C + +Q+ K L L S +RN+ Sbjct: 65 CRYFR--YCGGCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNR 122 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + G +G R+ ++ C L + + ++ + P V Sbjct: 123 TQLKIRGEK----IGFYMRESRQIINIDSCLLLKEDINGMISGVREILKFLIFQPEQV-- 176 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTK--LAQLRKALPWLHEQLPQLKVITVNIQPV 175 +I S SDG +++FV + + L+ +L E+L + + Sbjct: 177 ------HI---YSSSDGEALVKFVYQKRVRRFPLGLKHLRSFLSEKLKGAGIYHRKDDLL 227 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ GE+ + E + + + SFFQ N L + + Sbjct: 228 KRDVLLGES--------YIYEEYGGIKFRVSMDSFFQVNVYQVENLLDAVLQNIGD--HE 277 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 DLFCGVG L A ++ GIE A+ A + + +F +D+ + Sbjct: 278 KAVDLFCGVGTLTLPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDANRSGG 337 Query: 296 AQGD-VPELVLVNPPRRGIGKPLCDY-LSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 + P+LV+++PPR G+ L L T + + IIY SCN T+A+D+ L + +E Sbjct: 338 FIAELKPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVE 397 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 +V + DMFP T H E + +L K Sbjct: 398 KVYMIDMFPQTYHIESVVVLQK 419 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 155/386 (40%), Gaps = 32/386 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 CA + G C C +Q+ K LK+ L F EEW AP+ + +R +A Sbjct: 90 CAHF--GVCGGCSLQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRA 147 Query: 60 KMVVSGSVEKPLLGMLHRDGTPE---DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V ++ L M R+ D+ C + + LK + Sbjct: 148 RIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLDQVLSDSLVELKTLLESL-------- 199 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + + +I L + +++R L +L + Q LK + Q Sbjct: 200 TGKAHIGHIELAMGDDEVSLLIR-------HLDELNVSDVNQLRQFTLLKGWQLYFQSKG 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + + + + + V P F Q N V +++ A + + + Sbjct: 253 IDSLHRVDDEHAPMRLHYSLEDFKVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGER 312 Query: 237 MWDLFCGVGGFGLHCATPD---MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ- 292 + DLFCG+G F L A ++ G+E + E + A ++A LT+ F + D T+ Sbjct: 313 VLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQASFFSQDLTKD 372 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 + + +L++PPR G + Y+ + I+Y SCN T+A+D L G Sbjct: 373 FSHHSWAKQGFDALLIDPPRSGA-YEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYG 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +++++ + DMF HT H E + L K Sbjct: 432 YQLKKAAVMDMFTHTEHVESIALFEK 457 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 156/373 (41%), Gaps = 16/373 (4%) Query: 12 RSCQ--WIMQPIPEQLSAKTADLKNL-LADFPVEEWCAPVSGP-EQGFRNKAKMVVSGSV 67 RSC ++ +QL+ K + +L L + P E +RNK ++ V Sbjct: 80 RSCAAPLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQG 139 Query: 68 EKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYIL 126 +G ++ + L + + + L N +K ++ I Sbjct: 140 TTFKMGFYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKN-KITSIT 198 Query: 127 LTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEI 186 + S+ G + F + L E+ L ++ + I+ I Sbjct: 199 VKYSEKTGESQVIFESLKQAPFPAS--FIKRLIEKFDNLNIVQIVCNEEKTKIL---KLI 253 Query: 187 YLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGG 246 L ++++ + + + + QSF+Q N +++Y T + + + D F GVG Sbjct: 254 VLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGT 313 Query: 247 FGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPEL 303 G++ A Q+ +EI+ +A K++A L L+F + D +F + ++ Sbjct: 314 IGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRRQNIDV 373 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFP 361 ++ +PPR G+ K + + + + I Y SCN +T+ +D++ G++IE VQ FDMFP Sbjct: 374 IVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFP 433 Query: 362 HTAHYEVLTLLVK 374 T H E L LL K Sbjct: 434 QTYHVETLALLSK 446 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 150/383 (39%), Gaps = 25/383 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPE-QGFRNK 58 C ++ G C C W Q+ KT +LL A E + PE G+R++ Sbjct: 68 CPVF--GICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSR 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V+ K LG D+ C + S +L+ + Sbjct: 126 VQLKVNYQGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDP----- 180 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G + I + D + V + +A++ + L H ++ L Sbjct: 181 ---GNISQIDIARG--DDESISVIVNHAGASVAEVSEYLLQ-HREISDLIGSMFIRHKNS 234 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G + ++ L+ +F Q N QL D+ + Sbjct: 235 TTSIFGAEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEK 294 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG G F + A +TG E +IA A+++A G+T + F DS Sbjct: 295 VLDLYCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKK 354 Query: 297 QG---DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 + ++V+++PPR G + + ++ + IIY SC+ T+A+D+ L GF++ Sbjct: 355 LAAARETFDVVVLDPPRNGAAE-VMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQV 413 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 +Q DMFP T H E +TLL K Sbjct: 414 INIQGVDMFPQTYHLESVTLLTK 436 >UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexaceae RepID=A5V044_ROSS1 Length = 407 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 154/375 (41%), Gaps = 15/375 (4%) Query: 9 GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV----SGPEQGFRNKAKMVVS 64 G+C C + + P Q++AK L++L E + S +R + V S Sbjct: 33 GQCGGCAFQDREYPVQVAAKRTALRHLWEGDLPETLLTTLDVVASPNPFAYRTRMDFVAS 92 Query: 65 GSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 R DL +C L PA A+ R GL Y++ G L+Y Sbjct: 93 KERFGLRRSG--RFNYIIDLKECHLIPARAFAAARAMYDHAMRLGLPDYDLRAHAGFLRY 150 Query: 125 ILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 + + S D ++L + + + A + + + + + I P I Sbjct: 151 VAVRRSP-DDEVLLALITAAPDEAGTYAGKVEQVAQAALEYDGVVGVHWLINPTRTDISF 209 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP--VKHMWD 239 GET + + L R L I P +FFQ N + L RD V + + D Sbjct: 210 GETARF-WGRATLPMRVGAHTLDIGPNTFFQNNVWLLMPLLEAVRDAVAGEGERARALAD 268 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ-G 298 L+ GVG L A Q+ +E E++ A+++ A G + D + Sbjct: 269 LYGGVGTIALFVADLADQIVCVESVEESVRLARENIARAGFEHIAIVKADVADALRERTR 328 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLF 357 ++V+ +PPR G+G +C L + P+ I+Y SCN T D+R L +R+ ++ + Sbjct: 329 GAFDIVIADPPRTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAYRLTSLRGY 388 Query: 358 DMFPHTAHYEVLTLL 372 DMFPHT H E L +L Sbjct: 389 DMFPHTPHLESLAVL 403 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 154/386 (39%), Gaps = 34/386 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKA 59 C + G C C +QL+ K ++ L E W AP+ P G+R KA Sbjct: 78 CIHF--GVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKA 135 Query: 60 KMVV---SGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 ++ V +G ++ L+G T DL C + L I L+ ++ Sbjct: 136 RLAVKYVAGKDDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIR--CLSIFDR 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I + + G + V R+ LA L + V QP Sbjct: 194 ------VPQIEV----AAGDQAVGLVFRN---LAPFTVEDYRLLSAFARQYDFYVYEQPG 240 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A + AL + V ++ P F Q NPAV L A + P Sbjct: 241 DKASVRPIWPRAPQLSYALPDHA--VSVFFEPTDFTQVNPAVNHALVERAIALLALQPQD 298 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS----T 291 + DL+CG+G F A + G+E + A+++AA +T + FQ D Sbjct: 299 RVLDLYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIA 358 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---G 348 + A Q D VL++PPR G + + ++ + I+Y SC T+A+D L G Sbjct: 359 ELAHLQRDGVSRVLLDPPRSGAAE-VLADIAALRAERIVYVSCGPSTLARDAGRLVHEYG 417 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ + DMFPHTAH E +TL V+ Sbjct: 418 YRLAAAGVMDMFPHTAHVECITLFVR 443 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 159/384 (41%), Gaps = 34/384 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKA 59 C Y+ +C CQ +Q+ K + L F + W AP+ +R A Sbjct: 81 CEHYN--QCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSA 138 Query: 60 KMVVSGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + + + +R + + +CP+ FA VF I N Sbjct: 139 RLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLI--------NQH 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + + ++ L + + ++R +++ KAL Q +++ + Sbjct: 191 KALHSVSHLQLCQGDEQNFV----IIRHTKPISEDIKALVAQSAAEQQWQLVWQS----E 242 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++E +L E + +F Q N +V + A++W+ ++ Sbjct: 243 SEVIE---HSHLAMPFYALEEL-GLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDEN 298 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST-QFAT 295 + DLFCG+G F L A + G+E + A+A A Q+A +T QF D T + T Sbjct: 299 VLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKIET 358 Query: 296 AQGDVP--ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD--IRELPGFRI 351 A ++++++P R G + + L + I+Y SC+ T+A+D I GF + Sbjct: 359 ASWFNKNLDVLVLDPSRTGA-ITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFEL 417 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ L +MFPHT H E + L ++ Sbjct: 418 HKIGLMNMFPHTGHIETMALFQRR 441 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 150/385 (38%), Gaps = 31/385 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---APVSGPEQGFRNK 58 +C + C C Q++ K L + E P+ GP G+R++ Sbjct: 78 RCRHF--ALCGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSR 135 Query: 59 AKMVVSGSVEKP--LLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ +K L+G H D+ DCP+ + A I L Sbjct: 136 ARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGLSL----- 190 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R L I + L F + D + + +Q L V Sbjct: 191 ---RERLPQIEAAVGEERTA--LVFRVLEDPTAEDFARLARFGKDQ--GLDVYIQREGRD 243 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 +A + ET L+ E V P F Q N A+ Q+ + P + Sbjct: 244 SVAPVYPETAHDLSYSLPEWE----VTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEE 299 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--- 292 + DLFCG+G F L A +TG+E +EA+A A ++AA+ G+ ++F D ++ Sbjct: 300 RVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPES 359 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GF 349 + G VL++P R G + + I+Y SCN T+A+D L G+ Sbjct: 360 CGSWAGREYHKVLLDPSRSGA-LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGY 418 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 R+ + + DMFPHTAH E + + + Sbjct: 419 RLLKAGVMDMFPHTAHVESIAVFER 443 >UniRef50_C2BW20 23S rRNA methyluridine methyltransferase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BW20_9ACTO Length = 342 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 123/341 (36%), Positives = 185/341 (54%), Gaps = 28/341 (8%) Query: 61 MVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 MVVSGS + +LG+ + P DL CPLY + F ++ ++ R G PYN+ Sbjct: 1 MVVSGSKKSIVLGLAPNEKHPTGIDLQSCPLYAPAIHAAFTPIRAWLQRLGARPYNIPTA 60 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +GE+KY+L++ + + G +M+R VLRS L ++ L +LP L+V +VNIQP H Sbjct: 61 KGEVKYVLVSANPA-GDLMVRLVLRSKAALHRVEHTWSELQAELPNLRVFSVNIQPEHTT 119 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++EG EI L+ ++ + LW+ P +FFQTN A + LYA A W R+L + W Sbjct: 120 VIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQALYAQAATWARKLQPETAW 179 Query: 239 DLFCGVGGFGLHCATP-DMQLTGIEIASEAIACAKQSAAEL------------------- 278 DL+CGVGGF ++ Q+TG+E+ AI AK + EL Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239 Query: 279 ----GLTRLQFQALDSTQFATAQGDV-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSS 333 R F D+T++A Q + P+LV+VNPPRRG+G L +L +IYSS Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299 Query: 334 CNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 C T+ +D+R + ++I +L DMFPHT+H E + L+ + Sbjct: 300 CFPGTLVEDLRRMRSYQIRAAKLVDMFPHTSHVECVVLMSR 340 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 154/400 (38%), Gaps = 51/400 (12%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNK 58 QC + G C C Q++ K L++ LA + P++GP+ G+R + Sbjct: 74 QCKFF--GVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYR 131 Query: 59 AKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V + L+G R + D+ C + P + + L+ + R + Sbjct: 132 ARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQ--- 188 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I L Q D LR P E +L+ + Sbjct: 189 -----RMPQIELAVGQ-------------DVTALVLRNLEPITAEDEAELRAFADHHNIQ 230 Query: 176 HMAIMEGETEIYLTE--QQALAERF--NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 +G +Y + L + + +P F Q N + L + A + Sbjct: 231 FWLQPKGPDTVYPFYPLDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDA 290 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDS 290 P + DLFCG+G F L AT ++ GIE + A +A GL T+ F + Sbjct: 291 QPGDRLLDLFCGIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNL 350 Query: 291 TQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMA----------PRFIIYSSCNAQ 337 + + A + L++PPR G + L+ ++ P+ IIY SCN Sbjct: 351 FEVSADDVAALGKFDRWLIDPPREGA-LAVSKALAELSQSGGDAADLLPKRIIYVSCNPA 409 Query: 338 TMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 T+A+D L G+R+ + +MFPHT+H E + + + Sbjct: 410 TLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8 Tax=Thermococcaceae RepID=Y1259_PYRHO Length = 412 Score = 299 bits (767), Expect = 9e-80, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 153/378 (40%), Gaps = 31/378 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C+ + G+C C W EQL K + E S FRN + Sbjct: 62 KCSHF--GKCGGCLWQGLRYREQLKLKE----EIFKRITGIEAEIKGSPRIWYFRNISNF 115 Query: 62 VVSGSVEKPLLGM--LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +++ + +G T ++ +CP++ ALK F+ + L P+N + Sbjct: 116 IITVNG----IGFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNW--RE 169 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G++ Y+ + E + G +M+ + + L E I +++ Sbjct: 170 GDVHYLQVREGKFTGEVMVNIIAHVPLNYRE------ALMEAFNFADSIYWSLKADKKDD 223 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G + L + + E+ + I P FFQTN L + + + D Sbjct: 224 PRGFPTLVL-GNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCE---GSKVLD 279 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 L+ G+G L+ A ++TG+E+ ++ AK+SA + F + A+ + Sbjct: 280 LYSGIGTLSLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAED---AELE 335 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 E ++V+PPR+G+ K + P +IY SCN D R ++++ L Sbjct: 336 GYETLIVDPPRKGL-KEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVDDALLI 394 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT H E + LV++ Sbjct: 395 DMFPHTPHIEAVIKLVRR 412 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 161/395 (40%), Gaps = 48/395 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAP--VSGPEQGFRNK 58 C ++ G C C W Q AK + L F E AP V+ G+R + Sbjct: 68 CPVF--GICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCR 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALK----PFIARAGLT 111 A+ + S + +G +R G+ + +C + + L+ F + Sbjct: 126 AQFKIRWSGGRLHMGF-YRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEPDKIP 184 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 + A DG ++L D +A + P L +T Sbjct: 185 QIDAATGE-------------DGHVLLVVHYIGDNPG----RAADFFRSIQPHLASVT-- 225 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDV-------PLWIRPQSFFQTNPAVASQLYAT 224 +H+ ++ +++ +L+ + L R F Q N L + Sbjct: 226 --GIHLQCGRKDSIMHVWGVDSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSK 283 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 A P + + DLFCG G F L A+ QL G+E +I A+++A G+ ++ Sbjct: 284 ALHLAGVGPGRRVLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVE 343 Query: 285 FQALDS---TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 F A+D+ T+ A G+ + V+++PPR G + + ++ +AP I+Y SC+ T+ + Sbjct: 344 FIAIDAADGTRRLRAAGEHFDTVILDPPRTGARDAVGE-VAILAPERIVYVSCDPPTLGR 402 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D+ L G+R+ DMFP T H E +TLL++ Sbjct: 403 DLGVLRKAGYRVVGSHGVDMFPQTYHIESVTLLIR 437 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 169/383 (44%), Gaps = 39/383 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQGFRNKA 59 QC + RC CQ I Q S+KTA L L+ E + ++G +R +A Sbjct: 85 QCPHFT--RCGGCQQQHADITLQQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRA 142 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ + ++ L M +R DL D CP+ + L+ ++R Sbjct: 143 RLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSRLK-----AV 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ G ++ L ++++ ++LR L L A + + ++V + P Sbjct: 198 KRLG---HVELVQAENGPLLVLR-------HLDPLHPADEQALRDFAEQQGVSVYLAPDA 247 Query: 177 MAI--MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ + G+ +YL + L P+ F Q N AV Q+ A A W+ P Sbjct: 248 DSLTCLHGDEPVYL---------VAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQ 298 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + DLFCG+G F L A + G+E + + +++A L+ + F + Sbjct: 299 DRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDV 358 Query: 295 TAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 T Q V + +L++P R G + + ++ +AP+ ++Y SCNA T+A+D + L GF Sbjct: 359 TQQPWVAQGFDKILLDPARAGAA-GVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGF 417 Query: 350 RIERVQLFDMFPHTAHYEVLTLL 372 + V + DMFPHT H E + L Sbjct: 418 TLVNVAMLDMFPHTGHLESMALF 440 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 144/378 (38%), Gaps = 36/378 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNKA 59 C +Y RC C W Q I Q AK L L A E A +G +R+ A Sbjct: 75 CPVYQ--RCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHYRSVA 132 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V + +G G + C + LKP + G Sbjct: 133 RVHV----DGQRVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLPLIG--------- 179 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 L+ I L S +DG + + + + + W+ I V A Sbjct: 180 ---LREISLRLSTTDGTIHGHLIGQGQSAWRSWAR--RWMSAD--------ATIAGVSSA 226 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 EG + L + L E+ DV L I P SFFQ N A + ++ + Sbjct: 227 TREG--WMALAGAEYLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLL 284 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D FCGVG F L A GIE AI A+ SA L+ + + Sbjct: 285 DGFCGVGTFLLPLAHNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAILPQLK 344 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 +L +V+PPRRG+ + L P I Y SC+ T+A+DI+ L G+ I+ Q Sbjct: 345 QQFDLAIVDPPRRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQP 404 Query: 357 FDMFPHTAHYEVLTLLVK 374 D FP T+H E L LL K Sbjct: 405 HDFFPQTSHVESLVLLSK 422 >UniRef50_D0P3V9 RNA methyltransferase n=2 Tax=Phytophthora infestans T30-4 RepID=D0P3V9_PHYIN Length = 545 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 108/478 (22%), Positives = 164/478 (34%), Gaps = 108/478 (22%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPE------- 52 QC+ Y G C C+ +QL K ++ L AD + + G E Sbjct: 59 QCSKY-FGICGGCKLQHVSYTQQLREKQEWIRELFADRGHSPDMKIRDILGVETKENNGG 117 Query: 53 -QGFRNKAKMVVSG-----SVEKPL------------LGML------------------- 75 +RNK + S +KP +GM Sbjct: 118 VYSYRNKMEFTCSTGRWLLDGDKPTSDDSEAPRYPFTVGMFPVASVSARRSKQIHGKSKA 177 Query: 76 -HRDG-----TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTE 129 R L +C L ++ + L GL Y+ G LK I+L Sbjct: 178 RRRRSAVWSPRILSLNECLLQASACNRLLQQLVARCEDVGLQAYDFNTHEGFLKQIVLRR 237 Query: 130 SQS---DGGMMLRFVLR--SDTKLAQLRKALPWLHEQL-----------PQLKVITVNIQ 173 + +ML V + L+ + L + PQL I ++ Sbjct: 238 GVNWQGRTEIMLGLVTTMFEGEQSELLQSIVQDLVREHQRELLTETKDAPQLVSIVESLD 297 Query: 174 PV---------HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 + +TE L + + SFFQ N AS LY Sbjct: 298 REAQRHKHRKDSEPFEDTKTERVLYGSSHFEDSILSHRFEVTFDSFFQPNSNQASVLYRE 357 Query: 225 ARDWVRQLPVK-HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG--LT 281 + + LP K +WDLFCGVG G+ ++ G E+ A+ AK +A G Sbjct: 358 IQRMMAALPKKPVVWDLFCGVGSIGICMGAYAEKVVGFELVDAAVERAKVNARLNGYSAD 417 Query: 282 RLQFQALDSTQFATAQG----------------DVPELVLVNPPRRGIGKPLCDYLSTMA 325 +QF +D + + ++P++V+V+PPR G+ K L L +A Sbjct: 418 HMQFFCVDLAKSWQEEEFLDRIASHSDGGSSSSNLPDIVIVDPPRAGLQKKLIKMLRRLA 477 Query: 326 PRFIIYSSCNAQTMAKDIREL-----------PGFRIERVQLFDMFPHTAHYEVLTLL 372 PR I Y SCN + A D+ +R+ +Q DM PHT H E + L Sbjct: 478 PRHICYVSCNPHSQAPDLEAFCAKVKPEMGEVGTYRVRYLQPVDMLPHTPHIETVAWL 535 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 135/380 (35%), Gaps = 71/380 (18%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGP-EQGFRN 57 +C + G C C + QL K +++LL+ + + P E +RN Sbjct: 87 KCPYF--GVCGGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSPREYYYRN 144 Query: 58 KAKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ + + LG R + + CP+ V I GL NV Sbjct: 145 SARFLCGQQGD---LGFTDWRSNSFIKVDTCPIMDEKINEVL----QHIQGHGLPGENVR 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + S+ +++ P+L V Q H Sbjct: 198 ----------VRYSRQKDELVI-----------------------WPKLSVDLETGQQFH 224 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + SFFQ N A L A D + L K Sbjct: 225 TQVLLGRE------------------FRVSATSFFQVNTLQAENLIRIALDELEPLEGKT 266 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CGVG F A GIE + A A + + L + + + Sbjct: 267 VVDAYCGVGTFTRFIAERAELTIGIEESPSATADFRYNMQGLK---AKLIEGRAEKELGR 323 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIER 353 + + +L++PPR G + + +AP I+Y SC+ T+A+D++ L +R+++ Sbjct: 324 LPNNIDRLLLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKK 383 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T H E + L Sbjct: 384 VQPVDMFPQTFHIETIASLE 403 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 143/380 (37%), Gaps = 28/380 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C Y +C C Q++ K L++ L + P+ G G+R +A Sbjct: 66 CPHYS--QCGGCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRA 123 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ S + LG R D+ CP+ A + + + + Sbjct: 124 RLSAHHSQGRTTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLN------RLH 177 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 ++ I L S + L ++ R L + LP I + Sbjct: 178 T-PVRTIELHHSPAAN----SLTLHTEHLPKAARAHLIQHAQSLPANWHIWLQTPHRPAQ 232 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + ++ +L E +P P F Q NP L A A ++ P + + Sbjct: 233 PLLPDSPQLSY---SLPEYALTLPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIA 287 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDS---TQFA 294 DLFCG+G F L A Q+ GIE + E A Q+A L R QF + D T+ Sbjct: 288 DLFCGLGNFSLPIAAAGAQVIGIEGSPELTERASQNARLNHLAERAQFHSADLFQTTEHT 347 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 A + +L++PPR G + + PR I+Y SCN T A+D L G+R Sbjct: 348 VAGWGYFDKILLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFR 407 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 + +MFP TAH E + Sbjct: 408 NAGIVNMFPQTAHVETVGCF 427 >UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016949AC Length = 406 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 9/284 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGP--EQGFRN 57 C ++D +C CQ QL+AK ++ + + P+ G +RN Sbjct: 126 CPVFD--QCGGCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRN 183 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 KA++ + + G+ D+ C + V +K ++ + YN Sbjct: 184 KAQLQTEVRDSRVITGLYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNEK 243 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ G L+ I+ ++S G + L + + L + K + +H+++P++ I N+ P Sbjct: 244 KRSGVLRTIVARVARSTGKVQLTLITATP-FLPKHEKLVSAVHQRMPEVAEIAHNVNPDD 302 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ GE ++L+ + L E + + P++FFQ NP+ LY ++ + Sbjct: 303 TPLVFGERTVHLSGEDRLEETLGPLRFELSPRAFFQLNPSQTVHLYDYVKEAAALTGDEL 362 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 + D +CG G GL A ++ GIEI +A+ A+++A GL Sbjct: 363 VVDAYCGTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGL 406 >UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAM0_PHYIN Length = 815 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 144/363 (39%), Gaps = 35/363 (9%) Query: 47 PVSGPEQGFRNKAKMVVSGSV-EKPLLGML---HRDGTPE--DLCDCPLYPASFAPVFAA 100 S +G+RNK + +KP +G R+G+ +C V A Sbjct: 450 HASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPDECINVSKEMKAVCAV 509 Query: 101 LKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMML----RFVLRSDTKLAQLRKAL- 155 ++ + + + Y+V K G + + + +S S G +M+ V ++ + A ++ + Sbjct: 510 MQNIVETSDVPVYSVTTKSGVWRVLTVRQSVSTGELMVMVQVNLVGKTPEERAAVKDLVV 569 Query: 156 PWLHEQLPQLKVITVNIQPVH--MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQT 213 L ++ K+ +V IQ A + + ++ + L E + + P +FFQ Sbjct: 570 KRLTDESNAFKITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQV 629 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N A +LY+ + + ++D+ CG G G+ + ++ GIEI A A+ Sbjct: 630 NTHGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASEGVGKVVGIEICKPATDDAQV 689 Query: 274 SAAELGLTRLQFQALDSTQFATAQGDVPE----------LVLVNPPRRGIGKPLCDYLST 323 +A + + F + + + +V+PPR G+ + L Sbjct: 690 NAILNNVQNVSFVNSKAEDVMKSLLQKKRDESEKHLNRVVAIVDPPRAGLHHNVLRALRA 749 Query: 324 MAP-RFIIYSSCNAQ-TMAKDIRELPG----------FRIERVQLFDMFPHTAHYEVLTL 371 P I+Y SCN ++ +D L G F DMFPHT H E++ + Sbjct: 750 CPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCEMIIV 809 Query: 372 LVK 374 + Sbjct: 810 FDR 812 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 155/384 (40%), Gaps = 35/384 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKA 59 +C A RC CQ P+ Q AK L L E E+ + G G+R + Sbjct: 81 KCQY--ASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRV 138 Query: 60 KMV--VSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ G +++ +G ++ + C + + + + L ++R P N Sbjct: 139 RLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFS-QPKN-- 195 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 L +I L + + M+LR+ +L + L + + + +Q Sbjct: 196 -----LGHIELVAADNGVAMLLRY-------SGKLTENDRTLLLDFAVREELMLFLQ--- 240 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + E + Q + +++ L + F Q N + ++ A DW+ H Sbjct: 241 ----DDEKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDH 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLFCG+G F L + GIE S + AK +A +QF D Q Sbjct: 297 VLDLFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFAD 356 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 + + +L++PPR G + L + I+Y SCN T+ +D L +R+ Sbjct: 357 EVWATEPFNKILLDPPRTGAA-FALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRV 415 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 ++V + DMFPHT H E +TL KQ Sbjct: 416 KKVAMIDMFPHTGHLESITLFEKQ 439 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 149/394 (37%), Gaps = 46/394 (11%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA----DFPVEEWCAPV-SGPEQGFRN 57 C + CR C Q+ K L N L E P+ + +G+RN Sbjct: 79 CDHFQ--ICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRN 136 Query: 58 KAKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 KA++ V K L+G R+G D+ C + + FI L+ Y Sbjct: 137 KARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIET--LSIYQ 194 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 + + + + M++ R P+ +E L +L+ Sbjct: 195 ------HIAQLEIAIDDTRPAMIV-------------RHLEPFTNEDLEKLRSFAQENNY 235 Query: 175 VHMAIMEGETEIY-LTEQQALAER------FNDVPLWIRPQSFFQTNPAVASQLYATARD 227 +G I+ L Q + + + + P F Q N + ++ A + Sbjct: 236 WIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIE 295 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + DLFCG+G F L + + G+E + AK++A +T + F A Sbjct: 296 LLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYA 355 Query: 288 LDSTQ-FATAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 + + F + +L++PPR G + +C+ + + I+Y SC+ +A+D Sbjct: 356 ANLFESFEDKEWFNNFEYNKMLLDPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDA 414 Query: 344 REL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+++ + DMFPHT H E + + K Sbjct: 415 GILVNTKGYKLISAGVMDMFPHTMHVESIAVFEK 448 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 153/387 (39%), Gaps = 37/387 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNKA 59 CA Y C CQ QL K + + P+ G+R++A Sbjct: 115 CAHYAT--CGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRA 172 Query: 60 KMVVSGSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V + + + T ++ C + + + L+ ++ Sbjct: 173 RLGVWYEADSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQ--------ARV 224 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + +I L +QS +++R + +A R+AL L ++ + + + Sbjct: 225 ANKAVTHIELVAAQSGPAVIVR---HTKPLVALQRQALAELAQR--ESCQVWLEPNGNQG 279 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + + L +PL PQ F Q NPAV ++ A + + + Sbjct: 280 LTDLEGSPV----DPHLVLDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLV 335 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---- 293 D FCG+G F L A+ ++ G+E+ + A+ +A LGL L+F D +Q Sbjct: 336 LDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPR 395 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLS------TMAPRFIIYSSCNAQTMAKDIREL- 346 +L++PPR G K L L ++ + I+Y SCN T+A+D L Sbjct: 396 LRQLCSQASAILLDPPRDGA-KELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLA 454 Query: 347 -PGFRIERVQLFDMFPHTAHYEVLTLL 372 G+ ++ + + DMFPHT+H E + L Sbjct: 455 EAGYGLDALGVMDMFPHTSHVESMALF 481 >UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAM4_9PROT Length = 363 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 40/388 (10%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M C+ + G+C SC P EQL K LK + + F + E + ++ FR +A+ Sbjct: 1 MNCSSF--GKCGSCVLWQVPYEEQLKMKKDKLKEMFSKFEIPE-IEVIYDKDEHFRARAE 57 Query: 61 MVVSGSVEKPLLGMLHRD---GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V +K M R + +C + + + L I + N+ Sbjct: 58 FRVWHEGDKTYYAMRKRKEEGRGVIPIEECKIVDKAIYELMPKLMSEIEKNQ----NLRL 113 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K E+ ++ S S G +++ + RK + E + +LK N+ Sbjct: 114 KLYEVHFL----SNSKGEVIVTLIYH--------RKVDESIAEDIKRLKDKFKNVD---- 157 Query: 178 AIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 I+ + Y+ ++ L E I +F Q N + ++ + D L Sbjct: 158 FIVRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENTFTQPNREINKKMISWVLDNTSNLK 217 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + +L+CG G F + + ++ EI E+I A +A + F A+ + +F Sbjct: 218 GD-LVELYCGNGNFTIPLSENFRKVVATEINPESIEAATYNAEINNRKNISFLAMSAAEF 276 Query: 294 ATAQG----DVPEL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 + + + +L VL++PPR G+ + +++ IIY SCN +T+ +D+ L Sbjct: 277 SELKKTGFFNSYDLKNVLIDPPRAGLDEKSRKFVNEF--DNIIYISCNPETLKRDLETLS 334 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +I+ FD FP+T H E +L + Sbjct: 335 KNRKIKAFAFFDQFPYTNHMECGVVLER 362 >UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XVW9_BRAFL Length = 650 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 54/414 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPE--------------------- 52 P EQL KT K +L E P G Sbjct: 233 PLWNVPYEEQLKQKTESQKVVLGKLSRAIENVNPGLGSWVVQQRKQYDNMCCKLEDITPS 292 Query: 53 ---QGFRNKAKMVVSGSVEKP--LLGML---HRDGTPEDLC--DCPLYPASFAPVFAALK 102 +RNK + + S E +G ++ G+ + DCP P + + + Sbjct: 293 PILNNYRNKNEFNIGISPEGKEKTIGFRLGRYKGGSCTVVSPYDCPNLPDTAKDMVRIFQ 352 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQ-SDGGMMLRFVLR--SDTKLAQLRKALPWLH 159 ++ ++ + Y+ + +G K + + +Q S+ +M++F ++ S+ ++ + ++ L Sbjct: 353 TYLEQSTRSGYDTEKHQGHWKQLTVRTTQGSEVMVMVQFNVQDLSEEEIEKEKQLLKDYF 412 Query: 160 EQLPQLK-VITVNIQPVHMAIMEGETE---IYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 P IT H G+ E L ++ + E+ + I P +FFQ N Sbjct: 413 STGPGKDCGITSLFFQAHKQRRPGDEEASYQLLLGKEVIQEKLLGMTFRISPDAFFQVNT 472 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A LY+ DW + D+ CG G GL A ++ G+E+ +A+ AK +A Sbjct: 473 LAAEVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVNA 532 Query: 276 AELGLTRLQFQALDSTQFATAQGDV----PELVLVNPPRRGIGKPLCDYLSTMAP-RFII 330 G+ +F + + +V+PPR G+ + L + ++ Sbjct: 533 NINGIDNAEFLCGKAEDILPDLVRRLYGTDLVAVVDPPRAGLHTRVISVLRKCSNLTKLV 592 Query: 331 YSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SCN+Q+ + +L FR R D+FPHT H E++ + Sbjct: 593 YVSCNSQSAMPNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRHSELIIQFDR 646 >UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVF6_9DELT Length = 511 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 93/443 (20%), Positives = 158/443 (35%), Gaps = 72/443 (16%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV-----EEWCAPVSGPEQ--GF 55 C C C W P QL K +++ L P G + F Sbjct: 70 CPH--GEDCGGCPWQRLPYAAQLRWKGQLVRDALERIGGLGRDAALPLRPALGSPEQRAF 127 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 RNK + + LG+ R G + C L P + A AR+GL Y Sbjct: 128 RNKMEFAFGPADGSLCLGLRRRGGLQVLPVPGCALLPGEGLELVTACAGLAARSGLPAYV 187 Query: 115 VAR----------------------------KRGELKYILLTESQSDGG----------- 135 R RG +++++ D Sbjct: 188 PPRSAAEEGRLRPRADKGRGRRPRRERPGAEDRGFWRFLVVRYGWPDPDPAQVAASDAPG 247 Query: 136 --MMLRFVLRSDTKLAQ--LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 L V T + + + L + P ++ + A++ GE + ++ Sbjct: 248 RRWWLTCVTSPGTAEQRRTVARMGRELLDAFPCVQAFVHEERATPDALVAGERRVLCLDR 307 Query: 192 QA---------LAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK----HMW 238 + L + P SFFQ N A L ATA + + L + Sbjct: 308 RGEALPDDGAPLYLPLGGRWFGLDPASFFQVNSRAAELLAATAVEMLLSLRPDATPRRLL 367 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D++CG G GL A ++ G+E A+ A+++A G +++ D+ + TA Sbjct: 368 DVYCGAGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCRYEVGDAARLLTALA 427 Query: 299 DV-----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 + L++PPR G+ + L +AP ++Y SCN T+A+D R L + + Sbjct: 428 REHGPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATLARDARALSADYELM 487 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +V D+FPH+ H E ++ ++ Sbjct: 488 QVTPLDLFPHSPHVESVSCWQRR 510 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 147/384 (38%), Gaps = 31/384 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C +D +C C +QL+ K L + L ++ G+R KA Sbjct: 75 CPHFD--QCGGCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKA 132 Query: 60 KMVVSG-SVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + ++ T DL +C + + I A Sbjct: 133 RLGVKYVQKKGRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEIIHSL------EA 186 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R+R + I + + V R+ L+Q K + + +QP Sbjct: 187 RER--IPQIEVACGDDR----VALVFRNLDPLSQSDKEK---LRNFGTQEGFDIYLQPGS 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + ++ F DV + P F Q N V + A +W+ P H Sbjct: 238 NDSVHPLDKAHVAPLTYAHPSF-DVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDH 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 + DLF G+G F L A ++T +E+ + QSAA G+T + + + Sbjct: 297 VLDLFAGLGNFTLPIARKAAKVTAVELDEHMVKRGAQSAAANGITNTEHVIGNLFEPDPT 356 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFR 350 + VL++PPR G + + +++ AP I+Y SC+ ++A+D L G+R Sbjct: 357 HLWMQQTYDRVLLDPPRAGA-EAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYR 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT+H E + + + Sbjct: 416 LIAAGVMDMFPHTSHIESMAVFER 439 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 149/393 (37%), Gaps = 40/393 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNK 58 +CA + G C C + Q++ K L++ LA E AP+ GP G+R + Sbjct: 92 KCAFF--GTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYR 149 Query: 59 AKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V L+G + + D+ C + P + + L+ + + Sbjct: 150 ARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSI----- 204 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R + I L ++LR L + L + +QP Sbjct: 205 ---RDRMPQIELAVGSQVTALVLRV-------LEPINADDEALLRAFADEHKVQFWLQPK 254 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + + L E + + +P F Q N + L A + Sbjct: 255 GPDTVTPFYPLDVPLDYTLPE--FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDD 312 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQALDSTQFA 294 + DLFCG+G F L A ++ GIE + A +A E G+ F + + Sbjct: 313 RVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVT 372 Query: 295 ---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMA-------PRFIIYSSCNAQTMAKDIR 344 + L++PPR G + L+ +A P+ I+Y SCN T+A+D Sbjct: 373 GDDLRALGAFDKFLIDPPREGA-LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAG 431 Query: 345 EL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+R++ + +MFP+T+H E + L + Sbjct: 432 LLVHEAGYRLKGAGVVNMFPNTSHVESIALFER 464 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 155/387 (40%), Gaps = 32/387 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C + G C C EQ+ K L++ L F E+W P+ + +R +A Sbjct: 90 CPHF--GICGGCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRA 147 Query: 60 KMVVSG--SVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V ++ ++G + C + + + L+ L Sbjct: 148 RIGVRYIPRQDRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRK-----CLEGLMAK 202 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G ++ L + +++R + + ++ + + ++ QL +QP Sbjct: 203 AHIG---HVELAMGDHEVALLIRHL--EELNVSDVNHLRQFALQRQWQL-----YLQPRG 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + ++ + D+ P F Q N AV +++ A + ++ + Sbjct: 253 ADSLHRVDDVQAPMRLHYHLDDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGER 312 Query: 237 MWDLFCGVGGFGLHCATPD---MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ- 292 + DLFCG+G F L A Q+ G+E + E + A ++A L + F + D T+ Sbjct: 313 VLDLFCGLGNFSLPLARCVGDTGQVIGVEASDEMVLRATENAKANSLNQAIFFSQDLTKD 372 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 + +L++PPR G + + Y+ + I+Y SCN T+A+D L G Sbjct: 373 FSHHPWAKQGFDALLIDPPRSGAFE-VMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHG 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +++++ + DMF HT H E + L K Sbjct: 432 YQLKKAAVMDMFTHTEHVESIALFEKN 458 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 289 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 153/384 (39%), Gaps = 34/384 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQGFRNKAK 60 C + RC C Q++ K L + L E +S P+ G+R +A+ Sbjct: 78 CKHFP--RCGGCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRRRAR 135 Query: 61 MVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V + + ++ G+ E + +C + + AAL ++ Sbjct: 136 LAVQRAKDGQIIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFP--------- 186 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ + +D + + ++ L L QL + Sbjct: 187 SG-IRLSEIELLSADNAVAIAIEASRVPSASEREAMLAELTFTDAQLW--WKTEKQTAFK 243 Query: 179 IMEGETEIYLTEQQALAERFND-VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++G QAL ND + L + P F Q N + Q+ D VR + Sbjct: 244 RIDG-------GDQALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERA 296 Query: 238 ---WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF- 293 DLFCG G F L A ++ GIE SE + A+++A ++ +F D + + Sbjct: 297 SVAVDLFCGSGNFSLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWT 356 Query: 294 -ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 +LVL++PPR G + ++ + ++Y SC+ TM +D++ L G++ Sbjct: 357 GMRKIKGKVDLVLLDPPRSGAA-GVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYK 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHTAH E + LL K Sbjct: 416 MIAAGVMDMFPHTAHVEAIALLEK 439 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 150/379 (39%), Gaps = 59/379 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNKA 59 C ++ GRC C + P QL+ K A L L E A VS G+RN+ Sbjct: 61 CPVF--GRCGGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEEIAVVSSEPFGYRNRV 118 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V S + +R+ LC CP+ AL + + Sbjct: 119 QLHVEESR------IGYREARSHKLCAVGQCPVGSPKIEAAIRALNEMARDSRWPRF--- 169 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +K I + + + L + +T+ R+ W E++P + ++ + Sbjct: 170 -----MKSIEVF--SDENQVQLNVL---ETERPVARRFFDWCGEKIPGMVEGALDYEG-- 217 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + SFFQ N + +L A + Sbjct: 218 -------------------------RFRVSSNSFFQVNRFLIDRLVEVAIEGAE---GDT 249 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 DL+ GVG L A ++T +E + A+ + +A GL ++ + ++ A Sbjct: 250 ALDLYAGVGLLSLPLARKFREVTAVESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLA 309 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 P+LV+++PPR G+GK + LS + PR + +C+ T+A+D+ L G+R+E++ Sbjct: 310 LEAAPDLVVLDPPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKM 369 Query: 355 QLFDMFPHTAHYEVLTLLV 373 L D+FP T H E + L Sbjct: 370 TLVDLFPQTYHLETVVRLT 388 >UniRef50_UPI0001792CAF PREDICTED: similar to RNA m5u methyltransferase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792CAF Length = 650 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 89/424 (20%), Positives = 147/424 (34%), Gaps = 64/424 (15%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADF--------------------PVEEWCAPVSGPEQ- 53 EQL KT +KN+L D+ E P E Sbjct: 226 PLYNISYDEQLIQKTNSIKNVLMDYSRRLKRIKCGQGILNWLKKQQDENNGLPCKLLEIQ 285 Query: 54 ----------GFRNKAKMVVSGSVEK--PLLGML---HRDG--TPEDLCDCPLYPASFAP 96 G+RNK + + VE P++G + G + + + P Sbjct: 286 SLKDDSEKCIGYRNKCEFTIGMDVENKEPVVGFRVGAYNQGKTSVAPIDNISNVPQRMKD 345 Query: 97 VFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP 156 V + + + ++ G + + + S +ML V+ ++ +L Sbjct: 346 VVKCFQDLVRASKFPVFDPENYTGHWRQLTVRLSLKTEQLMLICVVHTENMEESALNSLK 405 Query: 157 WL-HEQLPQLKVITVNIQP------VHMAIMEGETE--IYLTEQQALAERFNDVPLWIRP 207 L + + A EG + L Q + E + L I P Sbjct: 406 QLILSYFTEGAGAVCKVDSLYFQKAKKRAAGEGNSFPLELLHGQGYIVEEVKGLKLRISP 465 Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 +SFFQ N A + L+ A+D + D+ CG G GL A Q+ G+EI EA Sbjct: 466 ESFFQINTAASEILFDAAKDLASINSQTTVLDVCCGSGTIGLSIAKDCAQVIGVEIQEEA 525 Query: 268 IACAKQSAAELGLTRLQFQALDSTQFATA------QGDVPELVLVNPPRRGIGKPLCDYL 321 + AK +A E G+T F A + + + + +V+PPR G+ L Sbjct: 526 VNMAKLNATENGITNAIFFAGKAEEVMNKREFQNPENANDVVAIVDPPRAGLHNKAILLL 585 Query: 322 STM-APRFIIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLT 370 M + ++Y SCN + ++ L F + DMFP T H E++ Sbjct: 586 RRMTHLKRLVYMSCNPKGAMQNFLSLSMAESKTKQGAPFVPVKAVPVDMFPQTPHCELIV 645 Query: 371 LLVK 374 + Sbjct: 646 YFER 649 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 141/387 (36%), Gaps = 65/387 (16%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA----PVSGPEQGFRN 57 +C+LY+ RC CQ+ QL K + + S +R Sbjct: 92 ECSLYE--RCGGCQYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIASPMPYAYRG 149 Query: 58 KAKMVVSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA+ +S + + D + C + S AL+ + N Sbjct: 150 KAEFHISFKSGRLPVIGYKEAADSRIVPVSRCAIVDESVNRSLTALRGKL--------NA 201 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 G R +L SDT A + P + Sbjct: 202 ISAAG-------RRGGKKEE---RVILWSDTGKAAVD----------PGVSG-------- 233 Query: 176 HMAIMEGETEIYLTEQQALAER-FNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + L R + L Q FFQ N A+ + + Sbjct: 234 --------------GRGGLVMRPVKEKMLRAPFQGFFQANSALVGSMVDSVIRACALTGK 279 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D +CG G F L A+ QL G++ EA+ CA ++ ++ G++ +F A D + Sbjct: 280 ETVLDAYCGSGLFSLFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEIL 339 Query: 295 T----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PG 348 ++V+++PPR G + + L ++ P IIY SCN T A+D+R L G Sbjct: 340 RHTFLKTQQSVDIVVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSG 399 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + + +Q DMFP T H E++ LL ++ Sbjct: 400 YILRDLQPIDMFPQTKHIEIVGLLERE 426 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 145/384 (37%), Gaps = 25/384 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C Y G C C Q++ K + L E PV G +R++ Sbjct: 66 CPHY--GDCGGCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRT 123 Query: 60 KMVVSGSVEKPLLGML--HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V S ++ R + C L P + + + NV Sbjct: 124 RLAVHTSANGKVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDM----VNVQP 179 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K G ++ + ++ + G + V + + + AL + K + Q + Sbjct: 180 KVG-IRSVEISVGE--GVTAVNIVSQK-RQPENVLCALSGCLNRGAGGKTVWQVWQQIGN 235 Query: 178 AIMEGETEIYLTEQQALAERF--NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A + + L R + + + F Q N + + A A ++ P + Sbjct: 236 AK---PQAVSPHDAPPLVFRLPEFGLTMPFQLGDFTQINLPLNEIMVARAVRYLDPQPHE 292 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD---STQ 292 + DLFCG+G F L A ++ GIE ++ A +A GL QF + D +T Sbjct: 293 RIADLFCGLGNFTLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQFASADLFAATP 352 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 A + +L++PPR G + + P+ I+Y SCN T+A+D L G+R Sbjct: 353 ETLAALGRFDKMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYR 412 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + ++FP T+H E + + + Sbjct: 413 FATAGMMNLFPQTSHVEAIGVFER 436 >UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio RepID=A2BEG2_DANRE Length = 619 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 81/423 (19%), Positives = 149/423 (35%), Gaps = 71/423 (16%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE--------------------------EWCAPV 48 P EQL K +++ +L E E P Sbjct: 196 PLWKVPYEEQLMMKEKEVEGVLQKLAREIGNNNKAMLPWLFVQKEKHNKMCCPLEAIRP- 254 Query: 49 SGPEQGFRNKAKMV--VSGSVEKPLLGML---HRDGTPEDLCDCPLYPA--------SFA 95 S + G+RNK + V V E +G ++ G+ C + Sbjct: 255 SPLQTGYRNKCEFVIGVGADGEDRTVGFRLGKYKGGS------CAVVSPSETTNVCSEAK 308 Query: 96 PVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKAL 155 V + FI Y+ G + + + ++ M + F + +L + Sbjct: 309 RVVQCFQQFIRTTPYAVYSPETYEGHWRQLTVRTTRLKQTMAMVFFNPQKLQEKELEELK 368 Query: 156 PWLHEQLPQLKVITVNIQPVHMAIMEGETE---------IYLTEQQALAERFNDVPLWIR 206 L + + + + ++ + G+ ++T ++ + E + I Sbjct: 369 QNLGQYFTEGEGKECAVTSLYF-VRMGQRTSAGTEDLPCEHVTGEEWIHEELLGLKFRIS 427 Query: 207 PQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASE 266 P SFFQTN A LY+ +W + + D+ CG G G+ A ++ GIE+ E Sbjct: 428 PHSFFQTNTPAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQE 487 Query: 267 AIACAKQSAAELGLTRLQFQALDSTQ----FATAQGDVPELVLVNPPRRGIGKPLCDYLS 322 A+ A+ +A GLT ++F + A +V+PPR G+ + + Sbjct: 488 AVKDAEANAKANGLTNVEFHCGKAEDVFPTILNAVVSPNVTAIVDPPRAGLHSKVILAIR 547 Query: 323 TM-APRFIIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTL 371 + ++Y +CNA+ + +L FR + D+FP T H E + L Sbjct: 548 KAEHLKRLVYVACNAKAAMNNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILL 607 Query: 372 LVK 374 + Sbjct: 608 FER 610 >UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PPI6_IXOSC Length = 494 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 154/407 (37%), Gaps = 56/407 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEE----------------------WCAPVSGPE 52 W P +QL K ++ +L + + P+ Sbjct: 78 AWWDTPYEQQLQQKQDLVRKVLVKYARKLEATNPALRPWLKQQREAHGGCCPVLPIRASP 137 Query: 53 --QGFRNKAKMVVSGSV--EKPLLGML---HRDGT--PEDLCDCPLYPASFAPVFAALKP 103 +G+RNK + V + + +G +R G+ P PAS V + Sbjct: 138 VTEGYRNKNEFSVGRHLATGEATVGFRLSSYRQGSMSVAPPDALPNVPASAKAVTRCFQE 197 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR----SDTKLAQLRKALPWLH 159 ++ ++G P++ G + + + S +G +M V+ ++ ++ + ++ L Sbjct: 198 YVRQSGKEPFDPESHGGYWRQLTVRTS-CEGHVMAIVVIHPQGLTEAEITEEKRKLREFF 256 Query: 160 EQLPQ--LKVITVNIQPVHMAIMEGE--TEIYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 E P V ++ +Q EGE +L L ER + + P +FFQ N Sbjct: 257 ESGPGQVCGVTSLYLQRFDKKRPEGEQAEFEHLFGTTELEERVRGLSFRVGPDAFFQVNT 316 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A L A D P + D+ CG G GL A ++ G+E+ A+ AK++A Sbjct: 317 PAAEVLLEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARVYGVEVCKRAVENAKRNA 376 Query: 276 AELGLTRLQFQALDSTQ-----FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMA-PRFI 329 G+ F + T + + +V+PPR+G+ + L A + + Sbjct: 377 EANGIGNASFVLGRAEDTMHDVMHTLRDSEDMVAVVDPPRQGLHNKVLRALRATASIKRL 436 Query: 330 IYSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHY 366 +Y SCN + ++ +L F + + DMFPHT H Sbjct: 437 VYISCNPEGALQNFLDLARPASNNYRGQPFVVVKAAPVDMFPHTPHC 483 >UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S5B9_TRIAD Length = 556 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 83/397 (20%), Positives = 149/397 (37%), Gaps = 40/397 (10%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL-- 72 + +QL K +L +L + A +RNK + + + ++ Sbjct: 163 PLWDKSYDQQLKIKKNNLDRILRK-CTSKLEAIKVPEINNYRNKCEFAIGQDSKDEVVIS 221 Query: 73 -------GML---HRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 G +R+G + DC P + A++ I ++ L Y+ G Sbjct: 222 VRAGIAVGFRLGSYREGNLSVVPPTDCANVPEEAKAIAKAMQSLIQQSSLPVYSFVDHTG 281 Query: 121 ELKYILLTESQSDGGMMLRFVLR----SDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + I + + G +M L S+ +L L+ + E+ +V++V +Q Sbjct: 282 YWRQICVRRNLL-GQLMAIVQLHPQDLSEDQLQSLKDEINRCLEKC-DCQVVSVYLQKQT 339 Query: 177 MAIMEGET---EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 G ++ + L E F + I P SFFQ N A LY RDW Sbjct: 340 TRSSAGNAGSVYEIISGSKYLYEDFLGMKFRISPSSFFQGNTLAAEVLYRNIRDWCPTKA 399 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + D+ CG G G+ A ++ GIE+ +AI A+ +A + ++F + Sbjct: 400 TTVVLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFICGKAEDK 459 Query: 294 ATAQGDVPELV-----LVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL- 346 D ++ +V+PPR G+ + L + +IY SCN + EL Sbjct: 460 LPTLVDNLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYVSCNPAMAVTNFVELC 519 Query: 347 ---------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 F+I + D+FP+T E++ + Sbjct: 520 SPRTNRLRGQPFKIMKALAVDLFPYTEQCELVLQFER 556 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 92/397 (23%), Positives = 157/397 (39%), Gaps = 52/397 (13%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNK 58 +C + G C C Q++ K L++ + P+ GP G+R + Sbjct: 67 RCPHF--GVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYR 124 Query: 59 AKMVVS--GSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARA----GLT 111 A++ V L+G R + D+ +C + P + + L+ IA + Sbjct: 125 ARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRPERIP 184 Query: 112 PYNVARKRGE----LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKV 167 VA G L++I E +D + + A WL + P Sbjct: 185 QIEVALGEGVTALVLRHI---EPLNDHDITVL------RDFAARHNVQWWLQSKGPD--- 232 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 + P+ A G+T Y + + + RP F Q N A+ + + A Sbjct: 233 ---TVHPLDPAH--GDTLAYTMPE-------FGLRMPYRPTDFTQVNHAINRSMVSRALK 280 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQ 286 + P + DLFCG+G F L AT + G+E + A ++AA GL R +F Sbjct: 281 LLEVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRALEAAARHGLEGRTRFA 340 Query: 287 ALDSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTM----APRFIIYSSCNAQTM 339 L+ + + + +L++PPR G + LS + PR I+Y SCN T+ Sbjct: 341 TLNLFEVDVSWLRGLGYFDRMLIDPPREGAH-AVAQALSQLTPAERPRRIVYVSCNPATL 399 Query: 340 AKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLV 373 A+D + G+ ++ + +MFPHT H E + + Sbjct: 400 ARDAAIMVHEGGYVLKAAGVINMFPHTGHVESIAVFE 436 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 157/398 (39%), Gaps = 38/398 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD------------FPVEEWCAPVS 49 QC + G C C M + EQL K + +L + W A + Sbjct: 81 QCQHF--GLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIK 138 Query: 50 GPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIAR 107 +R KA++ V + T + + CP+ + +F LK +A+ Sbjct: 139 SSPWHYRRKARIGVQFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQ 198 Query: 108 AGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKV 167 + G ++ I S + + + D ++ + + L +++ L Sbjct: 199 LTV-----KSAIGHIEVIQADISDTSSADKI----QKDNQVVVVVRQLKPMNDTDIGLWQ 249 Query: 168 ITVNIQPVHMAIMEGETEIYLT---EQQA--LAERFNDV-PLWIRPQSFFQTNPAVASQL 221 + H+ I +G ++ L + L+ D ++ F Q N V + + Sbjct: 250 LYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFIQINHQVNNAM 309 Query: 222 YATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 + A W+ L ++ DLFCG+G F L A ++ G+E + A Q++ GL Sbjct: 310 ISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLD 369 Query: 282 RLQFQALDSTQFATA----QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQ 337 QF D QG V + VL++P R G + + ++ + ++Y SC+ Sbjct: 370 NCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAV-SQIAELKIPCVLYVSCDPA 428 Query: 338 TMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 T+A+D L G+++E++ L DMF T H E + L Sbjct: 429 TLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILFT 466 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 153/383 (39%), Gaps = 27/383 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD---FPVEEWCAPVSGPEQGFRNKA 59 C ++DA C CQ L + LK ++ W AP++GP +R KA Sbjct: 119 CPVFDA--CGGCQLQHIKPDAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRKA 176 Query: 60 KMVVS-GSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + + + LG + + + CP+ + + L+ LT + AR Sbjct: 177 RLAIDARNPNQIKLGFREANSSNVINAETCPILVDPLSKLIGPLRD-----ALTGFESAR 231 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G +I L + V++ L + + + E + + V + + Sbjct: 232 HIG---HISLIAGDNTS----HLVIKHTKALEA--ELIDAVSELVNTSSSVGVCGIELKL 282 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + + + N + F Q N V ++ A W+ P + + Sbjct: 283 ENKQAQIRSVGRGTDMVMNTVNSCSISPSANDFIQINKVVNEKMVNQAIGWLNPEPNERV 342 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FA 294 D F G+G F L A ++ +E +E + AK +A + G+ +++ LD Sbjct: 343 ADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQQQGIENVEWLHLDLADKTNVE 402 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 + + VL++P R G +C L P+ I+Y SCN T ++D + L G+ +E Sbjct: 403 ASLQLGFDKVLLDPSREGA-LTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDGGYEME 461 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 + + +MFP T H E++ L ++ Sbjct: 462 KAGVAEMFPFTHHMEMMALFTRK 484 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 141/376 (37%), Gaps = 32/376 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C + GRC C + EQL+ K+ LK L +E + +RN+ Sbjct: 65 CPYF--GRCGGCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRV 122 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 K V LG + D + CP+ + + LK F + Sbjct: 123 KFKVR----NKELGFVGVDEDFVKVEHCPISSKAINDLMPFLKEFAKHFNPS-------- 170 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 +I + S + M++F +L+K L + + IT+ Sbjct: 171 ----WISVFYSDTQKEYMVKFASYDYIDKEKLKKFKEHLTPK--NVVGITLVKDDKRE-- 222 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + I + I SFFQ N VA +L T + ++ + D Sbjct: 223 ---DKIILSIGTPFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLE--KENYFDRVLD 277 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 + GVG FGLH A + +I +I A+ SA + + F +S F Sbjct: 278 DYGGVGLFGLHLARRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLY 337 Query: 300 V-PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLF 357 L++++PPR G+ K + P +I Y SC ++A+D++ L ++I+ + + Sbjct: 338 KHANLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMA 397 Query: 358 DMFPHTAHYEVLTLLV 373 DMFP T H E L Sbjct: 398 DMFPQTYHIETAVKLE 413 >UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 n=14 Tax=Chlamydiaceae RepID=Y883_CHLCV Length = 401 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 83/397 (20%), Positives = 152/397 (38%), Gaps = 25/397 (6%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG--PEQGFRNK 58 M C G C C + L AK L L A PV P RNK Sbjct: 5 MNCKH--LGICGGCSSPQSAYADSLKAKEQILHELFAPIFPPSEILPVIPCDPVLRGRNK 62 Query: 59 AKMVVSGSVEKPLLGML---HRDGTPEDLCDCPLYPASFAPVFAALKPFIARA-GLTPYN 114 + + E + + +C + + + + LT Y Sbjct: 63 MEFSFFQTKEGKKSLGFITPTKPKQGVPITECLMIHEDTMDILNLTRAWWDNHPELTAYY 122 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW-----LHEQLPQLKVIT 169 +G L + + + +M+ + + A + + ++ LP + +I Sbjct: 123 PPFNKGSLCTLTVRIGSPERKLMVILTTSAREEYAVEKGIIEEWKNALINSSLPIVSIIW 182 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERF------NDVPLWIRPQSFFQTNPAVASQLYA 223 A + + + + N +RP+SFFQ +++ Sbjct: 183 EEKVSAKNAPTY-FRSHLIHGEPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIE 241 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR- 282 A++++ + + DL+CG G G+ + ++ G+EI +AI AK++ Sbjct: 242 IAKEFMNPQGSETLLDLYCGAGTIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENL 301 Query: 283 LQFQALDSTQFATAQGD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 ++ D+ F D P++V+++PPR GI + YL + P+ IIY SCN + Sbjct: 302 IEVYLEDAKTFCRRHQDCPPPDVVVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQF 361 Query: 341 KDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ L G+ I++VQ D FPH+ H E + LL ++ Sbjct: 362 EECCSLISAGYHIKKVQPLDQFPHSPHLENIILLERE 398 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 146/390 (37%), Gaps = 41/390 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNK 58 QC ++ +C C QL K L N L A APV G+R + Sbjct: 76 QCPHFN--QCGGCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRR 133 Query: 59 AKMVVSGSVEKP--LLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V +K L+G ++G + C + L+ I L ++ Sbjct: 134 ARLGVKYVAKKQAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQS--LNAFHD 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I + + G +L V R L + + + + +QP Sbjct: 192 ------IPQIEV----ALGDEILGLVFRHLVPLNNSDVLA---LKNFAKKYSVQLYLQPG 238 Query: 176 HMAIMEGETEIYLTEQ--QALAERFND-----VPLWIRPQSFFQTNPAVASQLYATARDW 228 + +T + + Q L+ R + + + P F Q N + + A + Sbjct: 239 NE-----KTTHCIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQAMIQHAIEL 293 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + + DLFCG+G F L A + GIE S + AK +A + QF Sbjct: 294 LSPHFSDRILDLFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAINNTQFYTA 353 Query: 289 DSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 D T + +L++PPR G + ++ ++Y SCN T+A+D E Sbjct: 354 DLTGSILKEVWAQQTFNKILLDPPRSGA-LEVIQQIARWKVEKMVYISCNPATLARDSEE 412 Query: 346 L--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 L G+ +ER + DMFP T H E + L Sbjct: 413 LIKQGYHLERAGIMDMFPQTHHSEAICLFT 442 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 130/380 (34%), Gaps = 71/380 (18%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG------PEQGFR 56 C L+ G C C + Q+ K + L E + +R Sbjct: 68 CKLF--GICGGCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYNYR 125 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 N+A ++ L GT + + C + + + L Sbjct: 126 NRADFSINRQN----LLGFKIRGTHKFLHVECCHIMHDKINKMLSL---------LQGKK 172 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 RK I + + G +++ P++ + + Sbjct: 173 PKRKS---HNITIRYGINTGTWLIQ-----------------------PEMDTVEIE--- 203 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 T Q+ ER I SFFQ N A +L T +++ Sbjct: 204 --------------TGQKFYYERLLGKDFIISAPSFFQVNTYQAEKLIQTVLNYIT-QED 248 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 K + D + GVG F + A ++ IE + A A+ + + + + + Sbjct: 249 KTVIDAYAGVGTFTVFLAQKAEKVIAIEESRSAYKDAQINIK--NFDNITYLCKKTEEAL 306 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + ++++PPR G K + ++ + +IY SC T+A+D++ L G++++ Sbjct: 307 FESKINGDAIVIDPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLK 366 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 +Q DMFP T H E + L+ Sbjct: 367 EIQPVDMFPQTYHIENVALM 386 >UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=Q17NM7_AEDAE Length = 625 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 79/418 (18%), Positives = 152/418 (36%), Gaps = 65/418 (15%) Query: 19 QPIPEQLSAKTADLKNLLADFPVEEWC------------------------APVSGPE-Q 53 +QL K ++++N+L E W P+ Sbjct: 175 LSYEDQLVQKQSEMRNVLIKLGKEIWKTCPALRPYVEEQRKLHDGLPCKLERIRKSPQTD 234 Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDG---------TPEDLCDCPLYPASFAPVFAALKPF 104 G+RNK + + + + +P++L + + F Sbjct: 235 GYRNKCEFSIGKDDQGEIRVGFRVGSYSNGFLDVESPQNLKN---VSDKMKDTVKFYEEF 291 Query: 105 IARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDT-KLAQLRKALPWLHEQLP 163 + + L Y+ +G + + + S S G +M+ + + +L + + E Sbjct: 292 VRNSKLDIYSPETYQGHFRQLTVRTSSSTGDVMVVIGIHPQSLTEEELAQFKDSIVEHFT 351 Query: 164 QLKVITVNIQPVHMAIMEGETE--------IYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 K + I +++ + G+ E +L + + + + + I P +FFQ N Sbjct: 352 SDKGKEIGISSIYLEKI-GKRESGQTVNPVEHLHGETHIVDVIHGLKFRISPLAFFQINT 410 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A LY A D + D+ CG G GL A Q+ G+E+ +AI AK +A Sbjct: 411 PSAEVLYQCAIDLADATQQTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNA 470 Query: 276 AELGLTRLQFQALDSTQFATA-------QGDVPELVLVNPPRRGIGKPLCDYLS-TMAPR 327 + + A ++ T+ Q + +V+PPR G+ L Sbjct: 471 ELNKIDNCKLYAGNADDLITSLIRNANIQAGENLVAIVDPPRAGLHVRSITQLRNARGLN 530 Query: 328 FIIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +IY SC+ + K+ +L F +++ D+FPHT H E++ L ++ Sbjct: 531 RLIYVSCSPNSAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVLLFERE 588 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 147/383 (38%), Gaps = 26/383 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 QC ++ RC C Q++ K ++ L ++ P+ G +R++ Sbjct: 80 QCRYFE--RCGGCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDR 137 Query: 59 AKMVVSGSVE-KPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ VS + LG + + C L P + A++ + ++A Sbjct: 138 ARFSVSLDKSCRLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQ-------DLA 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ +L +S + + W +L I + I+ Sbjct: 191 EGGSIARFAEFYRG--SEITVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKV 248 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + L + L E ++P P F Q N + + A + + Sbjct: 249 SEPFYPQKDTIL--KYTLPEFGIEMPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGER 304 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQAL---DSTQ 292 + DLFCG+G F L A + G+E A + A+Q+A G + F A D T+ Sbjct: 305 VADLFCGLGNFSLPIAKSGASVVGVEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTE 364 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 A + +L++PPR G + + P+ I+Y SCN T+A+D L G+ Sbjct: 365 NTVASWGKFDKMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYI 424 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 + +V + +MF HT+H E + + Sbjct: 425 LGQVGIMNMFAHTSHVESIAVFE 447 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 148/383 (38%), Gaps = 38/383 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTA---DLKNLLADFPVEEWCAPVSGPEQGFRNK 58 +C YD RC C EQL K L E P++G E +R + Sbjct: 68 RCPFYD--RCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRR 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A++ V + +G + + DC + A L F+ + Sbjct: 126 ARLAVHYENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLRALLPVKVDE-- 183 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 ILLT + + LR + R P E+ N+ H Sbjct: 184 -------ILLTAGEKVAALTLR---------TKKRALSPAWGEK-------WANLAGAHW 220 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + E + ++ + + V L P F Q N +V L T W+ L + Sbjct: 221 QLWENDRCLFGEPNDLYYQPISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEKSEV 280 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDSTQFATA 296 DLF G+G F L A ++T +E + + AAE L +RL+ Q +D + A Sbjct: 281 LDLFSGLGNFSLPLAYKGARVTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAA 340 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 Q + L++PPR G + L P I+Y SCN T+A+D+ L GF + Sbjct: 341 QMKSWQSAKSWLLDPPRAGAH-AVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHL 399 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 ER Q+ +MF H+AH E + L+ + Sbjct: 400 ERGQVVNMFAHSAHIESVILMTR 422 >UniRef50_A2ELU0 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2ELU0_TRIVA Length = 534 Score = 286 bits (733), Expect = 8e-76, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 144/385 (37%), Gaps = 24/385 (6%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGPEQGFRNKAKMVVSGSVEKPL 71 W P+ EQ +AK+ L+ E +RNK +M V +E Sbjct: 150 AWHRMPLEEQYAAKSEKYTKLIQGIVPEGSSPVTVVPVPNTVNYRNKVEMTVGADLEGNT 209 Query: 72 LGMLHRDGTPED----LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 + + ED + +C P + F+ A Y+ +R G K+I + Sbjct: 210 VVGFNLGSKDEDVIAPIDNCLNVPKVAPYLARKFTDFVTHAKSPIYDRSRNSGVWKFITV 269 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 ++ M++ V +S+ + + + + Sbjct: 270 RTTEEGKTMLVVVVYKSEECQVDPDDVAQLTETFQEDVDSLYLCETTKYEGYGNDPVFTL 329 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L + E+ + I P SFFQTN A L++ + D+ CG G Sbjct: 330 LNGTATIEEKLRGLKFDISPMSFFQTNTPGAEILFSRVESLAEVDKSTVLIDVCCGTGVI 389 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE----- 302 GL A ++ GI+I +AI AK++A + + +F A + D E Sbjct: 390 GLSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPGILDQCEAEGSR 449 Query: 303 -LVLVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL----------PGFR 350 +V+V+PPR G+ K + + ++Y SCN +++ +D ++ F+ Sbjct: 450 VVVIVDPPRDGLHKTAAKAIRECKLLKRVVYISCNPESLVRDSKKFLFAENNNFATQPFQ 509 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 D+FPHT E++ L+ ++ Sbjct: 510 PVEWFGVDLFPHTDRLELVMLMQRE 534 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 95/418 (22%), Positives = 154/418 (36%), Gaps = 67/418 (16%) Query: 3 CALY--DAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRN 57 C + AG C C+ + Q++ K L++ L E P+ GP G+R Sbjct: 94 CPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRY 153 Query: 58 KAKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 +A++ V K L+G R D+ CP+ P + + L+ IA Sbjct: 154 RARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMD----- 208 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 R I L ++LR L L +A + +QP Sbjct: 209 ---ARDTCPQIELACGDDVTALVLR-------HLEPLSEADLGRLRSFAAAHGVQWWLQP 258 Query: 175 VHMAIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 G ++L ++ + + + +P F Q NP + L A + Sbjct: 259 K------GPDTVHLLDEGGPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLD 312 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG--------LTR 282 + D FCG+G F L AT ++ GIE + +A ++++ + L Sbjct: 313 AGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAP 372 Query: 283 LQFQALDSTQFATAQ---GDVPELVLVNPPRRG---IGKPLCD------------YLSTM 324 F A + + V + LV+PPR G + K L D L Sbjct: 373 ATFVARNLFEMTPEMLIADGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPAS 432 Query: 325 A-----PRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 A P+ I+Y SCN T+A+D L G+R + +MFPHTAH E + + + Sbjct: 433 AEGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 490 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 443 e-123 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 443 e-123 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 443 e-123 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 443 e-123 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 442 e-123 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 427 e-118 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 425 e-117 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 423 e-117 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 422 e-116 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 420 e-116 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 420 e-116 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 418 e-115 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 416 e-115 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 413 e-114 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 409 e-113 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 409 e-112 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 408 e-112 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 408 e-112 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 408 e-112 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 408 e-112 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 407 e-112 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 406 e-112 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 406 e-112 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 405 e-111 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 404 e-111 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 404 e-111 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 400 e-110 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 399 e-109 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 398 e-109 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 396 e-109 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 395 e-108 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 395 e-108 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 394 e-108 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 393 e-108 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 392 e-108 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 391 e-107 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 391 e-107 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 390 e-107 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 390 e-107 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 388 e-106 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 388 e-106 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 387 e-106 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 386 e-106 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 386 e-106 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 385 e-105 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 385 e-105 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 385 e-105 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 385 e-105 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 385 e-105 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 383 e-105 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 382 e-105 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 382 e-104 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 382 e-104 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 382 e-104 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 381 e-104 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 381 e-104 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 380 e-104 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 380 e-104 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 379 e-104 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 378 e-103 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 378 e-103 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 378 e-103 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 377 e-103 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 376 e-103 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 375 e-102 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 375 e-102 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 375 e-102 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 375 e-102 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 375 e-102 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 374 e-102 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 374 e-102 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 373 e-102 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 373 e-102 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 372 e-102 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 372 e-101 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 371 e-101 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 371 e-101 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 371 e-101 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 369 e-101 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 369 e-100 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 368 e-100 UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 368 e-100 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 368 e-100 UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Corio... 368 e-100 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 366 e-100 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 366 e-100 UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 366 e-99 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 366 1e-99 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 365 1e-99 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 365 1e-99 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 364 2e-99 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 364 3e-99 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 363 7e-99 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 363 8e-99 UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Act... 363 9e-99 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 360 4e-98 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 360 6e-98 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 359 9e-98 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 359 1e-97 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 357 3e-97 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 357 4e-97 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 357 4e-97 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 356 1e-96 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 355 2e-96 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 355 2e-96 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 354 3e-96 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 354 4e-96 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 354 4e-96 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 354 4e-96 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 353 9e-96 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 352 1e-95 UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA ... 351 2e-95 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 351 2e-95 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 351 2e-95 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 351 2e-95 UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococ... 351 3e-95 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 351 3e-95 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 350 5e-95 UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopo... 350 5e-95 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 350 6e-95 UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82... 349 7e-95 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 349 1e-94 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 349 1e-94 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 348 1e-94 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 347 4e-94 UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 346 6e-94 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 346 1e-93 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 345 1e-93 UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collins... 345 1e-93 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 345 2e-93 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 345 2e-93 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 344 2e-93 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 344 4e-93 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 343 4e-93 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 343 5e-93 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 343 5e-93 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 343 5e-93 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 343 6e-93 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 342 1e-92 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 342 1e-92 UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=17... 341 2e-92 UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Lepto... 341 3e-92 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 341 4e-92 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 340 4e-92 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 340 5e-92 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 340 6e-92 UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax... 339 8e-92 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 339 9e-92 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 338 1e-91 UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 ... 338 2e-91 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 338 2e-91 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 337 4e-91 UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 335 2e-90 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 334 3e-90 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 333 6e-90 UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 333 9e-90 UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacr... 330 6e-89 UniRef50_C4GBP4 Putative uncharacterized protein n=1 Tax=Shuttle... 329 1e-88 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 329 1e-88 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 327 4e-88 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 327 6e-88 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 326 1e-87 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 322 1e-86 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 322 2e-86 UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase ... 321 4e-86 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 319 8e-86 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 317 4e-85 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 315 2e-84 UniRef50_A9NFQ7 RNA methyltransferase, TrmA family, putative n=1... 313 6e-84 UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-... 311 2e-83 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 311 3e-83 UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 311 4e-83 UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Achol... 310 5e-83 UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS 310 6e-83 UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n... 309 9e-83 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 309 1e-82 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 309 1e-82 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 309 1e-82 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 309 1e-82 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 308 2e-82 UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgrou... 307 4e-82 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 306 9e-82 UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8... 306 1e-81 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 306 1e-81 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 305 2e-81 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 304 2e-81 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 304 3e-81 UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 ... 304 3e-81 UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lenti... 304 3e-81 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 304 4e-81 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 303 6e-81 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 303 6e-81 UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribac... 302 9e-81 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 302 1e-80 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 302 1e-80 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 302 2e-80 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 302 2e-80 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 301 2e-80 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 301 2e-80 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 301 3e-80 UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchi... 301 4e-80 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 300 5e-80 UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpe... 300 6e-80 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 300 7e-80 UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phyto... 299 8e-80 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 299 9e-80 UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 ... 299 1e-79 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 299 1e-79 UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavo... 298 2e-79 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 298 2e-79 UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=... 297 4e-79 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 297 4e-79 UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio Re... 297 5e-79 UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichop... 297 5e-79 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 296 7e-79 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 296 9e-79 UniRef50_UPI000186D10C HpaII tiny fragments locus 9c protein, pu... 295 2e-78 UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopob... 295 2e-78 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 295 2e-78 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 295 2e-78 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 294 3e-78 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 294 3e-78 UniRef50_UPI0001792CAF PREDICTED: similar to RNA m5u methyltrans... 294 3e-78 UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Camin... 294 4e-78 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 294 5e-78 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 294 5e-78 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 292 1e-77 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 291 2e-77 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 291 3e-77 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 291 4e-77 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 290 6e-77 UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protei... 290 6e-77 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 289 1e-76 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 289 1e-76 UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragm... 288 2e-76 UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfo... 288 2e-76 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 288 2e-76 UniRef50_Q8IZ69 tRNA (uracil-5-)-methyltransferase homolog A n=4... 288 2e-76 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 288 2e-76 UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexa... 288 2e-76 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 287 3e-76 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 287 3e-76 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 287 4e-76 UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nauti... 287 5e-76 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 287 6e-76 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 287 6e-76 UniRef50_UPI0000D56BDA PREDICTED: similar to CG3808 CG3808-PA n=... 286 9e-76 UniRef50_A2ELU0 Putative uncharacterized protein n=1 Tax=Trichom... 286 9e-76 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 286 9e-76 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 285 2e-75 Sequences not found previously or not previously below threshold: >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 12/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGP--EQGFRNKA 59 C A +C CQ EQL K + + L + G +RNKA Sbjct: 77 CEH--AAQCGGCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKA 134 Query: 60 KMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V G R DL C + + V ++ + + + Y Sbjct: 135 QVPVGLENGTVRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREH 194 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +G +++IL S + +++ V +L + ++ + L + +P L I NI Sbjct: 195 KGLVRHILARTSFTTEEVLVAIVTNG-RQLPKKQEVVQQLKDSIPNLCGIVQNINTRKGN 253 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G E+ L + L E+ ++ + +SFFQ NP LY A ++ + ++ Sbjct: 254 TILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVF 313 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--- 295 DL+CG+G L A ++ G+E A+ A+++A + +F + Sbjct: 314 DLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLF 373 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 QG ++V+V+PPR+G + L ++ M P+ I+Y SCN T+A+D++ L G+ Sbjct: 374 KQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQNGYNPIE 433 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 Q DMFPHT+H E + LL ++ Sbjct: 434 AQPVDMFPHTSHVETVVLLERK 455 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 172/383 (44%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRNK 58 C Y RC C L KT ++ + E G EQ +RNK Sbjct: 74 CPSYK--RCGGCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ + + G + D C + + V A +K +I + ++ Y+ Sbjct: 132 AQYPIGRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEIT 191 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G +++I+ G +M+ V+ + +K + L +++P++K + +N+ Sbjct: 192 GEGLVRHIMTRVGFKTGEVMVVLVINGRN-IPSQKKLVDRLVKEIPEIKSVVLNVNTKRT 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ I + + + + + I P SFFQ NP LY A D+ + + + Sbjct: 251 NVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-- 295 +DL+CG+G L + ++ G+E+ A+ A ++A G+ +F ++ + Sbjct: 311 FDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEM 370 Query: 296 -AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +G ++V+V+PPR+G + + L M P I+Y SCN T+A+D++ L GF + Sbjct: 371 YEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGGFEVR 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFP T H E + L+ K+ Sbjct: 431 EVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 180/383 (46%), Gaps = 13/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRN 57 +C +Y+ +C CQ QL AK +++++ + PV G +RN Sbjct: 78 ECPVYN--QCGGCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 KA++ + + G + ++ C + + +K + G++ YN Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R +G L++++ Q G +ML F+ R+ +L + + + + P++K I N+ P Sbjct: 196 RNKGTLRHVMARYGQVTGEIMLVFITRT-AELPNKKAIIEEIATKFPEVKSIVQNVNPKR 254 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ L + + + D+ I +SF+Q NP LY ++ + + Sbjct: 255 TNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNET 314 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CG+G L A ++ G+EI EAI AK++AA +T +F ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 297 QGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 + ++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ L G++ Sbjct: 375 WYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEGGYKT 434 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + VQ DMFPHT H E + L+ + Sbjct: 435 QEVQPVDMFPHTTHVECVVLMSR 457 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 175/394 (44%), Gaps = 24/394 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-----------CAPVSGP 51 C +YD +C CQ QL+ K + + L + P G Sbjct: 75 CGIYD--KCGGCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGM 132 Query: 52 --EQGFRNKAKMVVSGSVEKPLL--GMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIA 106 +RNKA++ V S L G + D C + V +K Sbjct: 133 NDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGR 192 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 G++ Y+ +G L++++ G +M+ V KL Q + + LP++K Sbjct: 193 ELGVSAYDEESGKGLLRHVMTRTGFVSGEIMVVLVTNG-RKLPQAELWVERIRAALPEVK 251 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I N+ ++ G+ L + + + + + I +SF+Q NP+ +LY TA Sbjct: 252 SIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQTIELYRTAV 311 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 D+ + + + D +CG+G L A ++ G+EI EAI AK++A G++ F+ Sbjct: 312 DYAQLTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFE 371 Query: 287 ALDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A + +G +P++++V+PPR+G L D + M P ++Y SCN T+A+D+ Sbjct: 372 AGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPSTLARDL 431 Query: 344 RELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 R L G++ V DMFP T+H E + +V++ Sbjct: 432 RTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 442 bits (1138), Expect = e-123, Method: Composition-based stats. Identities = 96/374 (25%), Positives = 172/374 (45%), Gaps = 12/374 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNKAKMVVSGS 66 C CQ QL K + N++ + P+ G E+ +RNK ++ V Sbjct: 82 CGGCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNKVQIPVGEK 141 Query: 67 VEKPLLGMLHRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + ++G + + C + + V + + + G+ Y+ RG+L++ Sbjct: 142 NGEVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEKSHRGQLRH 201 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 I++ +M+ FV ++ +K + + + L EQ PQ+K I N+ ++ G+ Sbjct: 202 IMVRVGHYTKDIMIVFVTKT-SKFPEKDRIIKELTEQFPQVKSIVQNVNDQRTNVVLGKK 260 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L + + ++ D+ I P+SFFQ NP LY A ++ + D +CG+ Sbjct: 261 TKVLWGENYIYDKIGDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYCGI 320 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV---P 301 G L A ++ GIE+ EAI AK +A G+ ++F + + + P Sbjct: 321 GSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKWKEQGLDP 380 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDM 359 ++++V+PPR+G + + M P+ I+Y SCN T+A+D+R L GF ++VQ DM Sbjct: 381 DVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILEDGGFETKQVQPVDM 440 Query: 360 FPHTAHYEVLTLLV 373 FP T H E + L Sbjct: 441 FPSTNHVECVAELT 454 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 168/379 (44%), Gaps = 13/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP-VSGP--EQGFRNKA 59 CA+Y +C C QL K ++ + P G +RNK+ Sbjct: 76 CAVYS--KCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKS 133 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V K G + D+ C ++ + +A+ G PY+ Sbjct: 134 QVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTG 193 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +G++++I+ + + G +M+ V + + + L EQL +L I NI P Sbjct: 194 KGDIRHIMTRFAHTTGQLMIVLVTTKERM-PFKEEIVRELVEQL-ELTSIVQNINPHKTN 251 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ L + + + + + I +SF+Q NP LY A D + + Sbjct: 252 VIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVI 311 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 D +CG+G L A + G+EI +AI A+ +A L F+ + + A Sbjct: 312 DAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWY 371 Query: 298 --GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 G V ++++V+PPR+G + L + + M P+ ++Y SCN T+A+D++ L G+ ++ Sbjct: 372 KAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKK 431 Query: 354 VQLFDMFPHTAHYEVLTLL 372 VQ DMFP T H E +T+L Sbjct: 432 VQPVDMFPMTTHIEAVTVL 450 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 98/393 (24%), Positives = 179/393 (45%), Gaps = 22/393 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRN 57 +C + A +C CQ EQL K + N L E P+ G +RN Sbjct: 76 RCEI--ASKCGGCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRN 133 Query: 58 KAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA+ V + ++ + R + D C + S P+ A ++ F+ + ++ Y+ Sbjct: 134 KAQFPVGKRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDE 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE-----QLPQLKVITV 170 +G +++ILL + +M+ V+ +L K + + + ++ I + Sbjct: 194 ESHQGLVRHILLRVGFTTKELMICVVINGK-ELPASDKLIKQILACPNLPKDFRVTSICL 252 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 N ++ GE I L + + D+ I P SF+Q NP +LY A D+ Sbjct: 253 NKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTD 312 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 + +WDL+CG+G L A + G+EI +AI AK +A + +F + Sbjct: 313 LTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAA 372 Query: 291 TQFATAQGD------VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + Q ++++V+PPR+G + L + + M P+ I+Y SC+ T+A+D++ Sbjct: 373 EEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLK 432 Query: 345 EL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L G+ +++V+ D FPH+ H E +TLL ++ Sbjct: 433 YLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 91/383 (23%), Positives = 166/383 (43%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRNK 58 C Y +C CQ QL K + NL E G +RNK Sbjct: 74 CIYY--AKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 +++ V S ++ +R + D+ C + V +K ++ ++ YN Sbjct: 132 SQIPVGQSNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEK 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 K G ++++++ MM+ FV Q + L ++ P + I NI H Sbjct: 192 TKTGLIRHLVVRTGYHTDEMMVIFVTNG-ATFKQSELLVNKLKKEFPNITSIKQNINNSH 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + L + + ++ ++V I SF+Q N + +LY A ++ + + Sbjct: 251 SNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEI 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF--- 293 + D +CG+G GL+ A + G+E+ +AI A+ +A + L F+ + Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILT 370 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 +QG P++V+V+PPR+G + L + P+ I+Y SCN T +D + L + + Sbjct: 371 WKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAEQYELV 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 + DMFP T H E + L V++ Sbjct: 431 EITPVDMFPQTTHIETVALFVRK 453 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 186/383 (48%), Gaps = 13/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGP--EQGFRN 57 C +Y+ C CQ EQL+ K + + +EE P G +RN Sbjct: 80 CPVYE--ECGGCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRN 137 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K+++ V EK + G+ ++ D+ C + + ++ + + ++ YN Sbjct: 138 KSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEK 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +++G ++ I+ + G + + + + +L + + + +Q+P +K I N+ Sbjct: 198 KQKGLVRTIVTRTAVQTGEVQVTLITTKE-ELPNKEQFIAEVQKQMPAVKSIMQNVNWRK 256 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +++ G+ L ++ + E D+ + ++FFQ NP LY A+ + Sbjct: 257 TSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEK 316 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF--- 293 + D +CGVG GL A ++ G+++ EAIA A+++A G T +++A + Q+ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352 +G P++++V+PPR G L + + + P+ ++Y SCN ++A+D++ L + +E Sbjct: 377 WVKEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVE 436 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFPHTAH E + LV++ Sbjct: 437 YVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 165/382 (43%), Gaps = 12/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGP--EQGFRNK 58 +C AG+C C QL K + + L+ G +R+K Sbjct: 73 KCIY--AGKCGGCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDK 130 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ V G + + C + ++ + ++ ++ Sbjct: 131 AEYPVGIEDGNIKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKS 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+YI+ S +M+ V+ + + + L + + +LK + +NI Sbjct: 191 GNGLLRYIITKVGFSTKEVMVILVING-IDIPYKDELINTLKKNIKELKSVVLNINKSRS 249 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G I + + + D I P SFFQ NP LY A ++ + + Sbjct: 250 RLVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIV 309 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-- 295 D++CG+G + A + GIE+ S+A+ AK++AA G+ F A + Sbjct: 310 IDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRL 369 Query: 296 -AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +G +P++++++PPRRG+ K + D M P+ IIY SCN T+A+D+R G++ E Sbjct: 370 YKEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNGYKTE 429 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 +VQ DMFP+T H E + L+ + Sbjct: 430 KVQPVDMFPYTYHVECVVLMSR 451 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 420 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 167/382 (43%), Gaps = 14/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRNK 58 C +Y +C CQ P QL+ K + + + G +RNK Sbjct: 78 CPVY--AQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNK 135 Query: 59 AKMVVS-GSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ + G +G + D+ DC + + + ++ ++ + + Sbjct: 136 MQVPAAQGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEED 195 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +RG +++I+ G +M V + ++ L+ L +++P + N+ H Sbjct: 196 ARRGIVRHIMGRVGVQTGEVMAVLVTN-EPQVPHLKDLTALLRQEIPGFTTLVQNLNTRH 254 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G + + +R I P SFFQ N A +LY TA + + Sbjct: 255 TNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEK 314 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CG G L A + GIEI AI A+Q+A + ++ + F D+ + Sbjct: 315 VIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAKEMPE 374 Query: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 QG P++V+++PPR G + + + ++ + P+ ++Y SCN ++A+D L GF + Sbjct: 375 LVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRDKGFVV 434 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 +VQ DMFPHT+H E + LL Sbjct: 435 RKVQPVDMFPHTSHVETVCLLT 456 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 103/383 (26%), Positives = 165/383 (43%), Gaps = 15/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRN 57 C LY G C CQ QLS KT +K+++ + P GP +RN Sbjct: 75 HCDLY--GFCGGCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRN 132 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K +M V G+ +G +CP+ + A + PY+ Sbjct: 133 KMQMPVGGTKGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEH 192 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +G L++++ QS M+ V ++ L K + L E++PQ++ I N+ Sbjct: 193 TGKGVLRHVIGRIGQSG--WMIILVTATE-HLPHQEKWVEKLTERVPQVETIVHNVNGKR 249 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G L + + D+ + P SFFQ NP + LY A + + Sbjct: 250 TNVILGPKNSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEI 309 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CG G L A + GIEI AI A+++A G +F D+ Sbjct: 310 VIDAYCGTGTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIPK 369 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 G P++++ +P R G + + ++M P+ I+Y SCN TMA+DI L G+ + Sbjct: 370 LYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGYEL 429 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + VQ DMFP TAH E + LL + Sbjct: 430 KEVQPVDMFPMTAHVEAVALLTR 452 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 183/383 (47%), Gaps = 14/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRNK 58 C + +C C + +L AK +++ + + PV G +RNK Sbjct: 74 CPCFS--QCGGCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNK 131 Query: 59 AKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A++ + + + + + DCPL P FA A++K ++ + Y+ Sbjct: 132 AQLPIGADRDGRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEE 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G L+++ L E+ + G +M+ V D +L + + L E LP L+ + N Sbjct: 192 SHSGLLRHLYLREASATGALMVCLVGNGD-ELPHSGELVKRLREDLPCLESVVFNSNREK 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ L + + + + ++ P SF+Q N A LY A ++ Sbjct: 251 TNVILGKRCQALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDT 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD---STQF 293 + DL+CG G G+ A+ ++ G+E+ EAI AK +A G+ ++F D + Q Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQM 370 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +G+ P +V+V+PPR+G G P+ +++ +APR IIY SC+ T+A+D++ L G+ + Sbjct: 371 LRKRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVKAGYCL 430 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + D+FP TAH E + LL K Sbjct: 431 QTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 101/407 (24%), Positives = 183/407 (44%), Gaps = 36/407 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGP--EQGFR 56 C + + +C CQ EQL K + N L E P+ G +R Sbjct: 71 CPV--SRQCGGCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYR 128 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NKA+ + + ++ + T + + DC L + +K F+ GL PY+ Sbjct: 129 NKAQFPFGRNKDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYD 188 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW----------------- 157 +G ++++L+ + G +M+ V+ T +L L Sbjct: 189 ENAHKGLVRHVLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGC 248 Query: 158 LHEQLPQLKV---ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 L E+L Q+K I+ ++ ++ G+ + L + + DV I P SF+Q N Sbjct: 249 LVEKLCQVKGMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVN 308 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 P +LY TA ++ + +WDL+CG+G L A ++ G+EI +AI A+++ Sbjct: 309 PVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRN 368 Query: 275 AAELGLTRLQFQALDSTQFATAQGDVP----ELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 AA G+ ++F + + Q + ++++V+PPR+G D + M P ++ Sbjct: 369 AALNGMDNVEFFVGKAEEVLPEQYEKNQIHADVIVVDPPRKGCDTVCLDTILKMRPEKVV 428 Query: 331 YSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SC++ T+A+D+R L G+ + +V+ DMFP T H E + L ++ Sbjct: 429 YVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 167/384 (43%), Gaps = 15/384 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGP--EQGFRN 57 C Y C CQ EQL+ K + +++ L P G +RN Sbjct: 74 NCESYQ--VCGGCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRN 131 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDL----CDCPLYPASFAPVFAALKPFIARAGLTPY 113 K + V + + LG C L V A L+ I LTPY Sbjct: 132 KIHLQVKEAKGRIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPY 191 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + KRG L+++++ + G M+ V S + L + P++ + NI Sbjct: 192 HWGEKRGLLRHVMIRQGFHSGQCMVVLVT-SPEEWQAENAFSRALVARQPKIVSVIRNIN 250 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 I+ GE + ++ + + N + I SF+Q N +LY A+++ + Sbjct: 251 RNPGRIVLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQG 310 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + D +CG+G L+ A +++ G+EI A+A AK++A G+T +F + Sbjct: 311 HERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKL 370 Query: 294 AT--AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 A+ P++V+++PPR+G K + +S I+Y SC+ T+A+D+ L G+ Sbjct: 371 LPRMAKDLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDLGVLDKLGY 430 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 + +VQ DMFP T H E + L+ Sbjct: 431 QTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 173/383 (45%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFR 56 C +Y+ +C CQ +QL K + L + G +R Sbjct: 82 CPVYE--QCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYR 139 Query: 57 NKAKMVVSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK++ + S ++ L+ + DC + + ++ + ++ YN Sbjct: 140 NKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYN 199 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 +++G+++ I+ G + + V +T L + + + ++LP++K I N+ Sbjct: 200 ERKRKGDVRTIVTRVGFETGEVQVVLVTAKET-LPHKEEIVKAIQKRLPEVKSIIQNVNG 258 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +++ GE L + + E DV + ++FFQ NP +LY + + Sbjct: 259 AKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGK 318 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF- 293 + + D +CGVG G+ A ++ G+++ E+I AK++A + G+ + + + Sbjct: 319 EKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWL 378 Query: 294 --ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 T +G P++V+V+PPR G D + + P+ +Y SCN T+AKD++ L +R Sbjct: 379 PKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSKDYR 438 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q DMFP TAH E + LV Sbjct: 439 VDYIQPVDMFPQTAHVEAVARLV 461 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 164/372 (44%), Gaps = 12/372 (3%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEW---CAPVSGP--EQGFRNKAKMVVSGSVEK 69 P QL AK A +K + + P G +RNKA++ V + Sbjct: 128 TLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQ 187 Query: 70 PLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 G ++ + + + + + + + G + Y+ ++G++++I++ Sbjct: 188 LETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVK 247 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 G +ML V+ L K + L + +P L + +N ++ G T L Sbjct: 248 RGHYSGQVMLILVVNGKG-LPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLL 306 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 Q ++ + I P SF+Q N A LY A + + + D +CG+G Sbjct: 307 WGQPVYQDQMLGLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIGTIS 366 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVL 305 L A Q+ +EI EAI A+ +A GL+ + FQA + + A+G ++ + Sbjct: 367 LALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQAEGIHFDVAV 426 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHT 363 V+PPR+G+ L +AP I+Y SCN T A+D + L G+ ++ VQ D+FP T Sbjct: 427 VDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAGYELQWVQPVDLFPKT 486 Query: 364 AHYEVLTLLVKQ 375 AH EV+ LL ++ Sbjct: 487 AHIEVVGLLERK 498 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 174/382 (45%), Gaps = 15/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C + +C C ++ P EQL K + LL+DF P+ G +RNK Sbjct: 177 ECPH--SKKCGGCHYLDLPYEEQLKIKQKQVSKLLSDFCK---VHPILGMEHPYHYRNKV 231 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V + ++ ++++GT C + + ++ + + Y+ Sbjct: 232 QAVFGRDAKGNIISGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDS 291 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+Y+L+ + G +M+ V+ S L + + L + P++ I +NI Sbjct: 292 GYGLLRYVLVKRGFTSGEIMVVLVIASPI-LPSKKNFVAALRKAHPEITTIVLNINNRTD 350 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G+ E L + + + I +SF+Q NP +LY A + + Sbjct: 351 SLILGDRETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERV 410 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---A 294 D +CG+G GL + ++ G+E+ EAI A +A G+T F D+T+F Sbjct: 411 IDAYCGIGTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAM 470 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 +G+ ++V+++PPR G + D + ++ P ++Y SCN T+ +D++ G++++ Sbjct: 471 AEKGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVK 530 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 DMFP T H E + LL K Sbjct: 531 EAWPVDMFPWTGHVETVCLLYK 552 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 10/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNKAKMVV 63 A +C CQW EQL+AK + + LA PV E+ G+RNKA + Sbjct: 109 ADKCGGCQWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPL 168 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S K + ++ G+ +L CP+ P+ AA+K I Y+ +G Sbjct: 169 GLSPTKDVKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGH 228 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 +K++ L + G +++ V RS TKL + + E+ P++ + VN+ + Sbjct: 229 IKHLALRIGRRTGQILVTLVSRS-TKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIF 287 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + L E+F ++ I+P +FFQ N A +L + + + + D + Sbjct: 288 GPETFLIAGSSYLEEKFANLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAY 347 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CGVG F L A Q G+E ++E++ A+++AA G+ + F+ D P Sbjct: 348 CGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAALLPDLDVKP 407 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 +++L++PPR+G + + + + P+ I+Y SCN T+A+D+R L G+R+ RVQ D Sbjct: 408 DILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGYRVTRVQPAD 467 Query: 359 MFPHTAHYEVLTLLV 373 FP TAH E L Sbjct: 468 FFPQTAHVECAVFLE 482 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 170/383 (44%), Gaps = 21/383 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGP--EQGFRNK 58 +C + A +C CQ + Q K + + + PV +RNK Sbjct: 80 RCPV--ARQCGGCQLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNK 137 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + + ++ +R + D +C L+ + +L+ +I AG Sbjct: 138 VQVPVGVNRDGKVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPA---- 193 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +L+++L+ + G +M+ + +S+ L + + L PQ++ I +N+ Sbjct: 194 ----QLRHLLIKHAFKTGQVMVVLIAKSEN-LKGKDELIERLTAAYPQIRSIILNVNGRE 248 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ G+ EI L ++ E + I +SF+Q NP LY A + + Sbjct: 249 DNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEET 308 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D++CG G GL A ++ GIEI A+ AK++A G+ +F D+ Sbjct: 309 VIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQ 368 Query: 297 QGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 + P++ +V+PPR+G+ D L M P I+Y SC+ T+A+D L G+ + Sbjct: 369 LLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGV 428 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 E VQ DMFP T H E + L+ K Sbjct: 429 EVVQPVDMFPQTTHVETVVLMSK 451 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRN 57 +C ++ G C C QL K +K+ L E V G +RN Sbjct: 71 ECEVF--GLCGGCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRN 128 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 KA+ + E ++ ++ GT C + + + LT Y+ Sbjct: 129 KAQFPLGSDNEGRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDE 188 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 G L+++++ +L FV R D K +L++ L ++P+LK + NI P Sbjct: 189 KTHTGLLRHLVVRVGICTNQALLIFVTR-DKKFKELQEIARKLMTEIPELKGVLQNINPR 247 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 ++ G+ + + + + I P SFFQ N +LY T R + + Sbjct: 248 RTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQE 307 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---- 291 + D +CG G G++ A + GIE+ AI A+++AA G+ F Sbjct: 308 TVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLP 367 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FR 350 + + P++++ +PPR+G+ K + + P I+Y SCN T+A+D++E+ + Sbjct: 368 ELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIKACYD 427 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 I VQ D+FP T H E + L Sbjct: 428 INEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 406 bits (1043), Expect = e-112, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 163/381 (42%), Gaps = 13/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGP--EQGFRNK 58 +C Y C C + QL K +++ V G +RNK Sbjct: 71 ECPYYYL--CGGCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNK 128 Query: 59 AKMVVSGSVEKPLLGMLHR-DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V G +KP +G + D+ C + V +K I + + Y+ + Sbjct: 129 TALPVGGDYKKPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKK 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L++I++ S + MM+ V L + ++K + +N+ P Sbjct: 189 HKGVLRHIVVRNSFAFDEMMIILVCTK--VPENLETIKKDILNNFSKIKSLYLNLNPKRT 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ +I + + +R ++ I P+SFFQ N LY+ ++R + + + Sbjct: 247 NVILGDEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 +D++ G+G + A ++ IEI +A+ AK+S+ G++ ++F + Sbjct: 307 FDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAEIEIPKL 366 Query: 298 GDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 P+ V+++PPR G K L + L IIY SCN T+A+D L G+ I Sbjct: 367 LKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNGYEIL 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T H E + L+ Sbjct: 427 EVQPVDMFPQTFHVECVVLMT 447 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 406 bits (1043), Expect = e-112, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 13/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPEQ--GFRNK 58 C A +C C QL K +K+ L E P E +RNK Sbjct: 71 CVY--AAKCGGCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNK 128 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A+ + K +G D+ DC + + A++ F ++ YN A Sbjct: 129 AQYPIREVDGKIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEAT 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G +++++ S + M+ V+ KL + + L +P + I +N Sbjct: 189 HKGLARHLVIRNSINFDEAMVCLVINGK-KLPHAQDLVERLRA-IPGITGILLNHNTAKG 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ E L + + ++ ++ I SFFQ NP LY A + + Sbjct: 247 NVILAEQTTTLDGRDYIMDKIGELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSETV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D +CG+G L A ++ G+E +A+A A ++A G+ ++F ++ Sbjct: 307 LDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVV--L 364 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 G+ ++V+V+PPR+G + + AP ++Y SC+ T+A+D++ + G+ + +VQ Sbjct: 365 GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENGYVVNKVQ 424 Query: 356 LFDMFPHTAHYEVLTLLVK 374 DMFP+T+H E LL + Sbjct: 425 PVDMFPYTSHVETCVLLSR 443 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 167/383 (43%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFR 56 C +Y+A C CQ QL K + + + P G +R Sbjct: 76 CPVYEA--CGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYR 133 Query: 57 NKAKMVVSGSVEKPL-LGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 NK++ + G+ + + DC + V ++ + + G+ Y+ Sbjct: 134 NKSQFQTRMVGSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYD 193 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 G ++ I++ G L F+ S KL + R+ L + LP++ I N+ Sbjct: 194 EKAGSGIVRTIVVRTGVKTGETQLVFITNSK-KLPKKREMLAEIEAALPEVTSIMQNVNQ 252 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 +++ G+ L ++++ E+ ++ + ++FFQ NP +LY + Sbjct: 253 AKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGS 312 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D +CGVG G A ++ G++I E+I AK++A + G+ + ++ + Sbjct: 313 ETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVL 372 Query: 295 TA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFR 350 +G P+ V+V+PPR G + L L + + ++Y SCN T+A+D+ L +R Sbjct: 373 PKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYR 432 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 I +Q DMFP TAH E + LL Sbjct: 433 IRYMQPVDMFPQTAHVETVVLLQ 455 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 169/383 (44%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFR 56 C +Y C CQ QL K ++ + G +R Sbjct: 87 CPIYK--ECGGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYR 144 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NK++M V K + G+ + DL DC + V +K A + PYN Sbjct: 145 NKSQMQVGHHQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNE 204 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 ++ G L+ I+ G + V + ++ + + ++LP + I NI P Sbjct: 205 RKRTGVLRTIVTRVGFETGEYQVVLVTAKK-DIPKVDLFIEAIKQRLPDVTSIVQNINPK 263 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 +++ G+ I L ++ + E ++ + P++FFQ NP +LY A++ + + Sbjct: 264 KTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKE 323 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF-- 293 + D +CGVG GL A ++ G+++ E+I AK +A G+ + + + Sbjct: 324 KVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLP 383 Query: 294 -ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 +G P++V+V+PPR G+ + L + P+ I+Y SCN T+AK++ L G++ Sbjct: 384 EWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKGGYK 443 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q DMFP TA E + + Sbjct: 444 LKALQPVDMFPQTAQVECVARIE 466 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 181/412 (43%), Gaps = 44/412 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---------------- 45 +C + A +C CQ M QL K + N L E Sbjct: 89 RCPV--ARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGT 146 Query: 46 --------------APVSGP--EQGFRNKAKMVVSGSVEKPLLGMLH--RDGTPEDLCDC 87 P+ G +RNKA+ S + ++ + R + + DC Sbjct: 147 GERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDC 206 Query: 88 PLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTK 147 L + ++ F+ G+ PY+ RG +++ L+ + + G +M+ V+ K Sbjct: 207 LLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVVNG-RK 265 Query: 148 LAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRP 207 L + + L + + + I++ + ++ G+ + L + + DV I P Sbjct: 266 LPKDEVLVERLRQ-VDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISP 324 Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 SF+Q NPA +LY TA ++ + +WDL+CG+G L A ++ G+EI +A Sbjct: 325 LSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384 Query: 268 IACAKQSAAELGLTRLQFQALDSTQFATAQGDV----PELVLVNPPRRGIGKPLCDYLST 323 I A+++A G+ ++F + + + + ++++V+PPR+G + D + Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPPRKGCDEVCLDTIVK 444 Query: 324 MAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLV 373 M P+ ++Y SC++ T+ +D++ L GF +ERV+ DMF + H E + ++ Sbjct: 445 MGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQ 496 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 163/381 (42%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C + C CQ + +QL+ K + LL P+ G +RNK Sbjct: 176 CPV--LNLCGGCQLLDMEYAKQLAFKQKQAEELLKGLCP---VKPIIGMKDPFHYRNKVH 230 Query: 61 MVVSGSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 V + ++ ++ + + C + + ++ + + Y+ Sbjct: 231 AVFDRDKKGNIISGIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTG 290 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + S G +M+ V S + L E+ P++ I NI + Sbjct: 291 FGLLRHVLIRKGFSTGEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIVQNINGRGTS 349 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ E L + + + I +SF+Q NP LY A + + Sbjct: 350 MVLGDKEHVLYGKGYIVDELCGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVV 409 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---AT 295 D +CG+G G+ + ++ G+E+ +A+ A +A G+ ++F D+ +F Sbjct: 410 DAYCGIGTIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMA 469 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 QG+ ++V+++PPR G + D + + ++Y SCN +T+A+D+R + G+R Sbjct: 470 EQGEKADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYRAAE 529 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 L DMFP T H E + LL K Sbjct: 530 AWLVDMFPGTVHTESIVLLQK 550 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 102/423 (24%), Positives = 185/423 (43%), Gaps = 52/423 (12%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPVSG--PEQ 53 QC L+ RC CQ +QL K ++N L + P G Sbjct: 70 QCELHK--RCGGCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPY 127 Query: 54 GFRNKAKMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 +RNKA+ V + ++ + R + DC L + +K ++ G+T Sbjct: 128 RYRNKAQFPVGYDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGIT 187 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLR--KALPWLHEQLPQL---K 166 PY+ +G ++++L+ + +M+ V+ D+ A+ R A L E+L ++ Sbjct: 188 PYDENTHKGLVRHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMT 247 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFN------------DVPLWIRPQSFFQTN 214 I+ NI + ++ G+ + + + + + + + I PQSF+Q N Sbjct: 248 SISYNINKENTNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVN 307 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 P +LY+TA + +++WDL+CG+G L + Q+ G+EI +AI AK + Sbjct: 308 PKQTEKLYSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNN 367 Query: 275 AAELGLTRLQFQALDSTQFATAQGD---------------------VPELVLVNPPRRGI 313 A G+T QF + + P++++V+PPR+G Sbjct: 368 AKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGC 427 Query: 314 GKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTL 371 + D + M+P I+Y SC++ T+A+D++ L + + + Q FD F HT H E + L Sbjct: 428 DEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICL 487 Query: 372 LVK 374 L + Sbjct: 488 LER 490 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 11/378 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQG--FRNK 58 C ++ +C CQ + P+QL K + N L + P Q +RNK Sbjct: 73 CPIFR--QCGGCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V + +G+ R+ + C ++ V+ ++ + ++ + PY+ Sbjct: 131 IQLPVMMKPDGLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERT 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L+++L+ + ++ V S K L+ + + P++K + NI Sbjct: 191 GKGVLRHLLIKSALQTSESLVILVT-SQEKCTSLQALAQQIMQACPEVKGVIQNINRKRD 249 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G L + + E D I P +FFQ NPA A +Y K Sbjct: 250 NVILGTDWHTLAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTF 309 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D FCGVG L A + GIE +AI A +A ++ F + + Sbjct: 310 LDAFCGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQSL 369 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 D ++V +NPPR+G + L + L + P I+Y SC+ T+A+D++ L G++IE+V Sbjct: 370 KD-IDVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQHGYQIEQVT 428 Query: 356 LFDMFPHTAHYEVLTLLV 373 FDMFP TAH E + L Sbjct: 429 PFDMFPQTAHVETVVKLT 446 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 396 bits (1017), Expect = e-109, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 157/380 (41%), Gaps = 13/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVS--GPEQGFRNK 58 C + A RC SCQW P QL AK ++ L E PV G+RNK Sbjct: 82 CPV--AERCGSCQWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNK 139 Query: 59 AKMVVSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + ++ L CP+ + P+ AA + I G + Y+ Sbjct: 140 STFPIGRDARGEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEK 199 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RG L+++ L + G +L FV+ T L+ ++ A L ++ L + +N Sbjct: 200 HHRGALRHLGLRIGERTGQRLLTFVVNGQT-LSGIKPAAQALMDRFADLVGVCLNTHTER 258 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G L Q + E + I P +FFQ + A L + Sbjct: 259 GNTIFGPQTRCLAGQDFIEEVLDGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQT 318 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CG+G L A + GIE ++ A+Q+A G+ +F A Sbjct: 319 VVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLPD 378 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 ++V+V+PPR+G + + + P ++Y SCN T+A+D++ L G+ + V Sbjct: 379 L--RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVAGGYCLVGV 436 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 Q D+F T H E + L + Sbjct: 437 QPVDLFAQTHHVECVATLER 456 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 167/380 (43%), Gaps = 15/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C A +C C + EQL K A +K LL F + P+ G +R+K Sbjct: 41 CPY--AKKCGGCDYQGVEYKEQLKTKQAYMKKLLKPFC---FVEPIVGMKNPLYYRHKVH 95 Query: 61 MVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + ++ +R T D+ C + + +K + + Y+ Sbjct: 96 AAFDCTRRGQIVAGAYRKNTHDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTG 155 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + + G +M+ VL S L + L ++ P + + +N+ + Sbjct: 156 YGLLRHVLVRKGYATGQIMVVLVLASPI-LPSKNNFVKALRKKHPNITTVVLNVNDKKTS 214 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ I L + + ++ I P SF+Q NP LY A + + Sbjct: 215 MVLGDRNITLYGKGFIEDKLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERII 274 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---AT 295 D +CG G G+ A ++ G+E+ +AI A +A + ++F D+ +F Sbjct: 275 DAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMA 334 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 +G+ ++V+++PPR G + + ++P ++Y SC +T+A+D++ L G+ ++R Sbjct: 335 QKGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKR 394 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 +D FP T+H E + L Sbjct: 395 ATPYDCFPFTSHIETVCCLT 414 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 178/382 (46%), Gaps = 20/382 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPEQG--FRNKA 59 C + A +C CQ EQL K + +++ + V G E +RNK Sbjct: 85 CPV--AKQCGGCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKG 142 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V + ++ + G + D+ C + V +K + + Sbjct: 143 QIPVGITNKQVVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQ--------N 194 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +++L+ ++ + G +M+ +++RS +KL+ + L E LP +K + +N+ Sbjct: 195 ADLFRHLLIKDAFASGEVMVVWIVRS-SKLSHKEEMCKELVENLPYIKSVIINVNTREDN 253 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ E L + + +D+ I +SF+Q NP +LY A ++ + + + Sbjct: 254 VILGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVI 313 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFAT 295 DL+CGVG + A + G+EI AI AK +A + + F D+ + Sbjct: 314 DLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLE 373 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 QG P++V+V+PPR+G D + M P+ I+Y SC+ T+A+DI++L G+ + Sbjct: 374 KQGKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQV 433 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 VQ DMFP + H E + LL K+ Sbjct: 434 VQPVDMFPFSFHVESIVLLQKR 455 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 156/369 (42%), Gaps = 11/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEW---CAPVSGPEQGFRNKAKMVVSGSVEKPL 71 +QL K + NLL ++ S E G+RNKA++ V K Sbjct: 81 SLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKLD 140 Query: 72 LGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES 130 +G + L V ++ + + + Y+ +GE++Y+ + S Sbjct: 141 IGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRRS 200 Query: 131 QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTE 190 ++ G +M+ V QL++ + E + + + +N P ++ G+ + L Sbjct: 201 KATGEIMVILVCLHK-DFPQLKEVTKEISE-IKGVTSVVLNHNPKKTNVILGKKDYLLWG 258 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + + ++ DV I PQSFFQ N +LY A P + D + G+G GL Sbjct: 259 EPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGLS 318 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLVN 307 A + G+E+ A+ A +A G+T ++ + + +G +++ V+ Sbjct: 319 VAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKEGLKTDVIFVD 378 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAH 365 PPR+G+ D P+ I+Y SCN TM +D++ G+ + + DMFP T H Sbjct: 379 PPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFDEIDPVDMFPQTPH 438 Query: 366 YEVLTLLVK 374 E + +L + Sbjct: 439 VEAVAVLER 447 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 170/382 (44%), Gaps = 12/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNKA 59 C +Y +C C +L K ++ + + +G+RNKA Sbjct: 84 CPVYR--QCGGCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKA 141 Query: 60 KMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V+ K + G R DC L +FAP+ + FI L PY+ Sbjct: 142 QFPVALRDGKAVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNH 201 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ + L E+ + G +M+ V + + + L P++K + VN Sbjct: 202 TGLIRNLYLREAPATGEIMVCLV-ATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTN 260 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G+ + + + + V + + P SF+Q N A +LY A ++ + + Sbjct: 261 VILGDRCSVVWGKPVIHDVLRGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLV 320 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA-- 296 DL+CG G GL A ++ G+EI A+ A++SA G+ +F D+ + A + Sbjct: 321 DLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSLA 380 Query: 297 -QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 QG P++V+V+PPR+G + + MAP+ I+ SCN T A+D L G+R+E Sbjct: 381 QQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQGYRVEE 440 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 V D+F T H E + LVK+ Sbjct: 441 VAAADLFSRTLHVECVISLVKE 462 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 163/382 (42%), Gaps = 15/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C + C CQ + EQL K +++L P+ G +RNK Sbjct: 179 CPV--EKYCGGCQMLDMEYTEQLKRKQKVVEDLFRGVCP---VKPIIGMKDPFHYRNKVH 233 Query: 61 MVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 V ++ ++++ + + C + + ++ + + Y+ Sbjct: 234 AVFDRDKRGNIISGIYQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTG 293 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L+++L+ + S +M+ V S + L E+ P++ I NI + Sbjct: 294 YGLLRHVLIRRAFSTNEIMVVLVTASPV-FPSKNNFVKALREKHPEITTIIQNINGRGTS 352 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 ++ G E L + + + I +SF+Q NP LY A + + + Sbjct: 353 MVLGNKENVLYGKGYIVDELCGCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVI 412 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---AT 295 D +CG+G G+ + Q+ G+E+ +A+ A +A + ++F D+ +F Sbjct: 413 DAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMA 472 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 +GD ++V+++PPR G + D ++ + ++Y SCN +T+ +D+R + G+ E Sbjct: 473 ERGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKLGYAAEG 532 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 V DMFP T H E++ L ++ Sbjct: 533 VWPVDMFPATRHTEIIVELCRK 554 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 163/382 (42%), Gaps = 15/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C + + C CQ++ P +QL+ K + +LL+ F + G +RNK Sbjct: 109 KCPI--SHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGP---VDKIIGMENPYHYRNKV 163 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ ++ +GT + +C + A + I L YN Sbjct: 164 TAAFRRMKSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDT 223 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G ++++ + + G +M+ V S + L P++ + NI Sbjct: 224 GTGLIRHLQIRVGRKTGQIMVIIVTASPV-FPSKKNLAKALVTAHPEITTVVQNINMKDT 282 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G+ + + + + I P SF+Q NP LY A + + + Sbjct: 283 SMVIGDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETV 342 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D +CG+G G+ + ++ G+E+ A+ A+ + + + + D+ +F Sbjct: 343 IDAYCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDV 402 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 +GD ++V ++PPR G + + T+ P+ ++Y SC +++A+D++ + G+++ Sbjct: 403 ADEGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVI 462 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 R+ DMFP T E + LL + Sbjct: 463 RMTPVDMFPLTRGVETVVLLTR 484 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 157/374 (41%), Gaps = 11/374 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS----GPEQGFRNKAKMVV 63 A +C CQW QL+AK +K+ +A E A + G+RNK + Sbjct: 77 ADKCGGCQWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPL 136 Query: 64 SGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + G + +L CP+ P+ AALK + Y Sbjct: 137 GRRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQ--PWPIYREQTHEPGF 194 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +++ L Q G ++ VL A L ++ + + VN + G Sbjct: 195 RHLGLRIGQRTGEQLITLVLAGPLP-AGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFG 253 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + L + L E V I +FFQ N A A QL T RDW+ + + DL+C Sbjct: 254 DETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYC 313 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG L A ++ G+E+ S ++ A +A G+ F + ++ + Sbjct: 314 GVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYDQAVD 373 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GFRIERVQLFDM 359 +++++PPR+G + + D + P ++Y SC+ T+A+D+ L +++ ++Q DM Sbjct: 374 VLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQPLDM 433 Query: 360 FPHTAHYEVLTLLV 373 FP TAH E + LL Sbjct: 434 FPQTAHVETIALLT 447 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 101/389 (25%), Positives = 163/389 (41%), Gaps = 19/389 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRNK 58 CAL+ G C C + PEQL KT +++ L G + +RNK Sbjct: 77 CALF--GDCGGCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNK 134 Query: 59 AKMVVSGSVEKPLLGMLHRDGT----PEDLCD---CPLYPASFAPVFAALKPFIARAGLT 111 A VS + LG L R D C L V A + + Sbjct: 135 AHFHVSRDSGRLALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVP 194 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 Y+ +RG L+ +LL + + G +ML V R+ L + P + + N Sbjct: 195 LYDWETQRGYLRNLLLRRAAATGEIMLVLVTGRQN-WPGEREFAERLTAEEPGVVSVIRN 253 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + + + G + A+ E + I P SFFQ NP A + Y AR + Sbjct: 254 VNALETRELLGPENRVRAGEPAITEHLGGLKFRIGPASFFQVNPEQAEKTYEIARLFAGL 313 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + + D + G+G L A+ + G E A+A A+++A G+ ++F+ Sbjct: 314 TGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373 Query: 292 QF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP- 347 A+G ++ +++PPRRG G + L + PR ++Y SC T+A+D+ L Sbjct: 374 DLLPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGRLAE 433 Query: 348 -GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 GF + +VQ DMFP T+H E + L ++ Sbjct: 434 LGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 390 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 163/382 (42%), Gaps = 15/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C ++D RC CQ P QL K ++ LL + V G +RNK Sbjct: 80 RCRVFD--RCGGCQLQHVDYPAQLDWKKEKVQQLLGRYGR---VHDVLGMAEPWAYRNKV 134 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 S S + ++ ++ + + C + + A + + + PY+ + Sbjct: 135 IATFSLSKKGKVIAGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQ 194 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + G +++ L+ +++ V S ++ + L ++ P++ I +N+ + Sbjct: 195 RTGLVRHCLIRVGHVSREVLVCLVCASPI-FPARKQLIQRLRQRHPEITTIVMNVNSRNT 253 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G E L + + + I +SF+Q N LY A + + + Sbjct: 254 SVVLGSQERVLVGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERV 313 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---QFA 294 D +CG+G L A ++ G+E+ ++ A ++A L F D+ + A Sbjct: 314 LDAYCGIGSISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQA 373 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 +G ++V ++PPR G + L + P I+Y SCN T A+D+R L G+++ Sbjct: 374 AREGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVR 433 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 + D+FP T+H E + LL + Sbjct: 434 TIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 14/385 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNK 58 +C + G+C C P +QL K ++ L ++ + P+ G +RNK Sbjct: 72 KCPAF--GQCGGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNK 129 Query: 59 AKMVVS--GSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 + + LGM + + + +C + + + A + L Y Sbjct: 130 MEFTFGDLKKGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYR 189 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTK--LAQLRKALPWLHEQLPQLKVITVNI 172 + + G L+ +++ ++++ G +++ V S L + + + ++ + L I I Sbjct: 190 IMAREGYLRNLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKG-NLVGILHTI 248 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 +++ + L + + E + I P SFFQTN A +LY+ RD++ + Sbjct: 249 NDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGES 308 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 K ++DL+CG G G A ++ GIE+ EA+ A+++A L +F A D Q Sbjct: 309 KSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQ 368 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 P++++++PPR G+ +Y+ I+Y SCN +T+ +D++ L G+ Sbjct: 369 VIKEVKQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVLVENGYV 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 IE+V+ DMFP T H E + L ++ Sbjct: 429 IEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 165/381 (43%), Gaps = 11/381 (2%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + A +C CQ +QL K D + LL F + +RNK + Sbjct: 5 KCPV--AKKCSGCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEI-IGADDPYNYRNKVQA 61 Query: 62 VVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V ++ +++ + C L + ++ + L PY+ +R Sbjct: 62 VFRSDRNGRIISGVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTER 121 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+++L+ ++ G +++ V ++ + + L ++ P + +T ++ + Sbjct: 122 GFLRHVLVRVGKNTGEILVTLV-GGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEML 180 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE L + + + I P SF+Q N A +LY A + + D Sbjct: 181 LLGENNEVLYGEGYITDILCGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLD 240 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQALDSTQF---AT 295 + G+G G+ + Q+ GIE + A+ A ++ E GLT + F D+ +F Sbjct: 241 AYSGIGTIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKA 300 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERV 354 G + V+++P R G + + L +AP I+Y SCN T A+D++ L + + + Sbjct: 301 KLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDI 360 Query: 355 QLFDMFPHTAHYEVLTLLVKQ 375 Q FDMFPHT H E + + ++ Sbjct: 361 QPFDMFPHTRHVECVVSMSRK 381 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 157/369 (42%), Gaps = 10/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAKMVVSGSVEKPLL 72 QL+ K ++ L V+ AP G G+RNKA++ V K Sbjct: 94 PLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLET 153 Query: 73 GMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R + D + + + G++ Y K+G +++I+ Sbjct: 154 GFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGY 213 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ + + KL L +LP+LK + NI ++ G+ + + Sbjct: 214 YSHELMVVIITNTK-KLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGE 272 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + ++ I P SF+Q NP S LYA A + P + D + G+G L Sbjct: 273 DDIHDQLMGKDFVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSV 332 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FATAQGDVPELVLVNP 308 A ++ G+++ AI A+++A +T +F D+ + +G P +V V+P Sbjct: 333 ADKVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADEGLKPNVVFVDP 392 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE-RVQLFDMFPHTAH 365 PR+G+ + L D + M P +Y SCN T+A+D ++ GF IE VQ D FP T H Sbjct: 393 PRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTH 452 Query: 366 YEVLTLLVK 374 E +T+ K Sbjct: 453 VESITVFKK 461 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 11/376 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRNKAKMVV 63 A +C CQW +QL+ K L++ L P + G +RNK + Sbjct: 90 ADKCGGCQWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPM 149 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + +PL ++ G+ +L CP+ +K + G + Y+ +R +G Sbjct: 150 AKPEGQPLRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGH 209 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L + ++L V S +L L ++ P L + +N+ + Sbjct: 210 LRHLGLRIGRRTREVLLTLVSCS-RRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIF 268 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + + +L E F LWI SFFQ N A + D + + + D + Sbjct: 269 GPETEVIAGRGSLREEFAGFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAY 328 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG+G L A + G+E EA+A A+ +A G+ QF Q Sbjct: 329 CGIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLP-TLPPA 387 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFD 358 ++V+++PPRRG + + + L P I+Y SC+ T+A+D++ L +R+ + + D Sbjct: 388 DIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLTQWRAAD 447 Query: 359 MFPHTAHYEVLTLLVK 374 FP T H E + L + Sbjct: 448 FFPQTGHVEGVAFLER 463 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 94/402 (23%), Positives = 160/402 (39%), Gaps = 31/402 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ----GFRNK 58 C + G C CQW EQL K + + L + + +RNK Sbjct: 88 CPHF--GVCGGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNK 145 Query: 59 AKMVVS---------------GSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAAL 101 + S LG+ R ++ DC L A + Sbjct: 146 MEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKET 205 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRS-DTKLAQLRKALPWLHE 160 + + +G+ Y + +RG +++++ E + G +L V A + L Sbjct: 206 RDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVS 265 Query: 161 QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 + P + + ++ + G+ + + ER + I +SFFQTNP A + Sbjct: 266 RFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQTNPFSAEK 325 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY + +WDL+CG G L A ++ G E+ +AI A +A G+ Sbjct: 326 LYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGI 385 Query: 281 TRLQFQALDS-TQFATAQGDV-----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC 334 +F + D + A+G P++V+ +PPR G+ + L M P IIY SC Sbjct: 386 ENARFISGDLKERINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVSC 445 Query: 335 NAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 N T+A+D+ + I V+ FD+FPHT H E + + ++ Sbjct: 446 NPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 24/393 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGP--EQGFRNKA 59 C + RC C W+ P +QL+ K + L AD C P+ G +RNK Sbjct: 9 CPI--DNRCGGCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKV 66 Query: 60 KMVV------SGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 + L GM R D +C + A + ++ + + + P Sbjct: 67 VSPFVGIYDKRTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEP 126 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 Y+ R G L++ + + G +M+ V R++ + +K + L + P++ + N+ Sbjct: 127 YDEDRDEGFLRHAQVRVGHNSGEVMVTLVTRTE-QFPTAKKFVRALVSRHPEITTVVQNV 185 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 ++ G+ E L + + + I SF+Q N LY+TA + Sbjct: 186 NSRKTNVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLT 245 Query: 233 PVKHMWDLFCGVGGFGLHCAT------PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + + D +CG G GL +L G+E ++A+A A+ +A G+ +F Sbjct: 246 GTETVMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFV 305 Query: 287 ALDST---QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 A D+ + QG +++ ++PPR G +++P+ I+Y SCN T A+D Sbjct: 306 AADAGAYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARDA 365 Query: 344 REL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + L G+RI+ +Q DMFPHT H E + + + Sbjct: 366 KYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 11/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQ-GFRNKAKMVVSGSVEKPL 71 +QL K + NLL +E E ++ PE+ G+RNKA++ V + Sbjct: 81 SLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLE 140 Query: 72 LGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES 130 +G R L V A++ + + + Y+ GE++Y+ + S Sbjct: 141 IGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRRS 200 Query: 131 QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTE 190 +S G MM+ V QL + Q+P + + +N P ++ G + + Sbjct: 201 KSTGEMMVILVCLHK-DFMQLPNVAAEV-SQIPGVSGLILNHNPKKTNVILGPKDYLVFG 258 Query: 191 QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLH 250 + ++ D+ I PQSFFQ N +LY A P + D + G+G GL Sbjct: 259 NDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLS 318 Query: 251 CATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPELVLVN 307 A + GIE+ +AI AK +A +T ++ + + G ++V V+ Sbjct: 319 VAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLKTDVVFVD 378 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAH 365 PPR+G+ + P+ I+Y SCN T+ +D++ + R+ DMFP T H Sbjct: 379 PPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMFPQTPH 438 Query: 366 YEVLTLLVK 374 E +T+L + Sbjct: 439 VESVTVLER 447 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 160/372 (43%), Gaps = 12/372 (3%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV--SGPE--QGFRNKAKMVVSGSVE 68 + EQL K ++N++ +++ + G E +RNK+ + V Sbjct: 75 GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNG 134 Query: 69 KPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 + +G R ++ C + + L+ I+ L+ Y+ G +++I+ Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMF 194 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 + +M+ V + K +L + + + + ++ I +NI ++ G+ Sbjct: 195 RTNTLKSEIMVGIV--AKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTEN 252 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L + + + + + I +SF+Q NP LY+ A + + D +CG+G Sbjct: 253 LFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIGTI 312 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELV 304 L A ++ GIEI A+ A ++A +T ++F S Q + V Sbjct: 313 SLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLISQDVKLDAV 372 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPH 362 +V+PPR+G + L+ M I+Y SCN T+A+D+ + G+++ VQ DMFP Sbjct: 373 IVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLGYKLGSVQPVDMFPG 432 Query: 363 TAHYEVLTLLVK 374 T H E + LL K Sbjct: 433 TYHVETVVLLSK 444 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 169/394 (42%), Gaps = 23/394 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE----QGFRN 57 QC G C C+ + +QL K + + L + E G+RN Sbjct: 80 QCPY--CGHCGGCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRN 137 Query: 58 KAKMVVSGSV------------EKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALK 102 K + + + LH GT D+ C L P + ++ Sbjct: 138 KMEFSFADRRWLLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVR 197 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 + +G+ Y + +G ++++L S + M+ V ++ + L+ L ++ Sbjct: 198 AYARASGVPAYGLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRR-LLQPLADLLADRY 256 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P++ + NI + +GE EI L +++R I SFFQTN A +LY Sbjct: 257 PEVVSVVNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISANSFFQTNTRGAERLY 316 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 AR++ + + DL+CG G + + ++ G+EI +A A + ++ Sbjct: 317 TVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSN 376 Query: 283 LQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKD 342 ++F A D + ++++++PPR G+ K + + + MAP I+Y SCN T+A+D Sbjct: 377 VRFVAGDVKETLPRLDCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPATLARD 436 Query: 343 IREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + L + + VQ DMFPHT H E + L K+ Sbjct: 437 VAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 159/370 (42%), Gaps = 11/370 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPEQG--FRNKAKMVVSGSVEKP 70 PEQL KT +K+ L + A G E +RNKA++ V Sbjct: 82 DLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVL 141 Query: 71 LLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTE 129 G ++ L D + V AL+ + R L PY+ + G ++ +++ Sbjct: 142 ETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRR 201 Query: 130 SQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLT 189 G +M+ V ++ + + + +Q P++ + NI + + G+ L Sbjct: 202 GHYSGQIMVVLVTTRPKVF-RVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLY 260 Query: 190 EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGL 249 Q + ++ I +F+Q N +A +LY TA D+ + D + G+G GL Sbjct: 261 GQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGL 320 Query: 250 HCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPELVLV 306 A ++ G+E+ EA+ +K++A ++ + + G P ++LV Sbjct: 321 SVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKDGIQPTVILV 380 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTA 364 +PPR+G+ + + I Y SCN TMA+DI+ G+ +++VQ D+FP T Sbjct: 381 DPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTH 440 Query: 365 HYEVLTLLVK 374 H E + LL K Sbjct: 441 HVETVALLSK 450 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 165/381 (43%), Gaps = 12/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C ++ C CQ Q+ KT +K+ L VE + +RNK Sbjct: 70 KCPVFKP--CGGCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNK 127 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 +M + + + G + +C + + +K + + + PY+ Sbjct: 128 VQMPIGVKGNRLVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLS 187 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G +K+IL +ML + D K+ + K + + ++ +K + NI Sbjct: 188 HQGNIKHILTKHGYHSNEIMLVLISYLD-KINNVDKLVAEITKEFSMIKTVIQNINHRID 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ EI L + + D I +SF+Q NP +LY A ++ + + Sbjct: 247 NVILGDKEIILFGDGFIYDNLLDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVV 306 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D +CG+G L A ++ G+EI AI A+ +A + ++F+ D+ ++ Sbjct: 307 LDAYCGIGTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIEL 366 Query: 298 GDVP---ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + ++V V+PPR+G K DYL P IIY SC+ T A+DI+ L ++++ Sbjct: 367 VNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQVD 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 Q DMFPHT H E + L Sbjct: 427 MCQPVDMFPHTTHIENIIRLE 447 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 171/383 (44%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C L G C C + P EQL K A L+ LL F AP+ G +RNK Sbjct: 34 RCPLEKRG-CGGCPMLSLPYEEQLKRKQAKLEELLGKFGP---VAPILGMEHPWHYRNKV 89 Query: 60 KMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + K L+ ++ GT + C L+ AA++ P++ R Sbjct: 90 ISSFAWGPGKNLVSGIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENR 149 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + G ++++L S S G ++ V S L R + E P + + N+ P Sbjct: 150 RTGLIRHVLCRHSLSTGEVLAVLVTASPV-LPGARAFAARVKELCPAIVTLAQNVNPRPG 208 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + + G+ E L + + + V I P SF+Q NP LY+TA R + + Sbjct: 209 SAVLGDREKILYGRGYIEDVLCGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERV 268 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---A 294 D +CGVG GL A + G+E+ A ACA +A + +F+ D+ F Sbjct: 269 LDAYCGVGTIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGM 328 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 A+G+ ++V ++PPR G D L ++P +Y SCN +T +D+ L G+R E Sbjct: 329 AARGEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAE 388 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +Q DMFPHT H E + +L ++ Sbjct: 389 SIQGVDMFPHTEHIETVAVLTRR 411 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 155/401 (38%), Gaps = 32/401 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRNK 58 C ++ G C C+W+ QL K + + L E PV +RNK Sbjct: 84 CPVF--GSCGGCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNK 141 Query: 59 AKMVVSG---------------SVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAAL 101 + S + LG DL C L V L Sbjct: 142 VEFSCSNMRYLLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVL 201 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 + F GL PY G L+ ++L S+ +M+ V K A ++ L Sbjct: 202 RDFAIERGLEPYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDK-ALMQALKERLEAA 260 Query: 162 LPQLK-VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 +P+ + + N+ + GE E ++ + ER D+ I SFFQTN A Sbjct: 261 MPEQQMTLLNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAET 320 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY P ++DL+CG G L+ A Q GIE+ A+ A+ +A GL Sbjct: 321 LYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGL 380 Query: 281 TRLQFQALDSTQFATAQG-----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 + F D F Q P +++ +PPR G+ D + + P I+Y SCN Sbjct: 381 SNTVFFQADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCN 440 Query: 336 AQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 +A+D +E+ G+R+ Q DMFP T H E + + Sbjct: 441 PDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 27/397 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSG--PEQGFRNK 58 C + G C C+W EQL K + + L E P+ P Q +RNK Sbjct: 83 CEHF--GTCGGCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNK 140 Query: 59 AKMVVSGSV-------------EKPLLGML--HRDGTPEDLCDCPLYPASFAPVFAALKP 103 + + ++ +G R + C L P + A+ Sbjct: 141 LEFTCAEGRWLTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDA 200 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 ++ + +T YN+ G L+ +++ + + +M+ + D L + +L P Sbjct: 201 YVLQHDMTLYNLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDNP-ELLNGLMTYLQTLFP 259 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 Q+ + + + + + + + E+ + I P+SF+QTN A LY Sbjct: 260 QITSLNYILNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGPKSFYQTNAQQAYNLYK 319 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 AR++ + ++DL+ G G L A + G+E ++A A+ +A G+ Sbjct: 320 VAREFAGLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANT 379 Query: 284 QFQALD----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 F A D T A+ P++V+ +PPR G+ + + L AP I+Y SCN T Sbjct: 380 TFVAGDMKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQ 439 Query: 340 AKDIREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D+ L G+ + VQ DMFPHT H E + +L K+ Sbjct: 440 ARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 176/382 (46%), Gaps = 13/382 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS---GPEQGFRNK 58 QC Y +C CQ+ E+L AK +++ L + PV + +RNK Sbjct: 75 QCIHYT--KCGGCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNK 132 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V E P +G R + DC L P + A + AA ++ ++ Y+ Sbjct: 133 VQFPVQPGPEGPRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKT 192 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 RG ++++ + +++ G ++ ++ + Q + L P L + + + Sbjct: 193 GRGLVRHVYVRVNRA-GQSLVCLLVNGK-SVPQEDALVQALRNVEPGLVGVVLGVNEKKN 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G++ L Q L + + SF+Q N A LY A D+ + + Sbjct: 251 NVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 DL+CG+G L A ++ G E+ +A+ A+++A G+ +F D+ + A A Sbjct: 311 LDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARAL 370 Query: 298 GD---VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 P++V V+PPR+G+ + + D + +MAP ++Y SC+ T+A+D++ G+ + Sbjct: 371 AARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVLR 430 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 + + DMFP TAH E + LL + Sbjct: 431 KAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 170/380 (44%), Gaps = 15/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGP--EQGFRNKA 59 C C CQ P QL K A +++ L P+ G +RNKA Sbjct: 78 CP---NTECGGCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKA 134 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V G +G + DC + + + A ++ ++ + Y+ Sbjct: 135 QYAVRGCEAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNH 194 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ ++ + G +M+ V + L + L L LP + + NI Sbjct: 195 TGCVRNLMTRKGFKSGELMVVLVTLGE-ALPFEAELLATL-SDLP-ITTLVQNINDERTN 251 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G L + + ++ +++ I P SFFQ NP LY++A ++ + ++ Sbjct: 252 RILGANNRVLLGEGVIRDKIHELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVF 311 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT--- 295 D++CG+G L A ++ GIE AI+ A+++AA G+ +F + Q Sbjct: 312 DIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELY 371 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 AQG ++V+++PPR+G K + L MAPR ++Y SCN QT+A+D+ L GF ++ Sbjct: 372 AQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFMLDE 431 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 VQ DMFPH+ H E + L Sbjct: 432 VQPVDMFPHSMHVEAVARLS 451 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 10/375 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PV--SGPEQGFRNKAKMVV 63 A +C CQW Q+ +K + + L P+ S G+RNKA + Sbjct: 86 ADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPL 145 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S S + +R G+ ++ CP+ + +K I G + Y+ +K+G+ Sbjct: 146 SRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGK 205 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L Q G M+L + L L + E+ P L I +NIQP + Sbjct: 206 LRHLSLRIGQRTGEMLLTLISAHKG-LPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIF 264 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ + + + E+F D+ + +FFQ N A L + + + + D + Sbjct: 265 GDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAY 324 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 GVG F L A Q IE+ +++ +++A + + F A ++P Sbjct: 325 AGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIP 384 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG---FRIERVQLFD 358 +++L++PPR+G + + P I Y SC T+A+D++ L + I VQ D Sbjct: 385 DVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYGITWVQGCD 444 Query: 359 MFPHTAHYEVLTLLV 373 FP TAH E +L Sbjct: 445 FFPQTAHVECAVILK 459 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 10/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAKMVVSGSVEKPLL 72 QL+ K ++ L V P G +RNKA++ V + Sbjct: 106 PLANLKYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLET 165 Query: 73 GMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R + D + + + + G++ Y+ +G +++I+ Sbjct: 166 GFYRRGSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGF 225 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ + + KL + L +LP+LK NI ++ G+ + Sbjct: 226 YSHELMVVIITNTK-KLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGA 284 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + ++ I P SF+Q NP + LY A + P + D + G+G L Sbjct: 285 DEIHDQLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSI 344 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---FATAQGDVPELVLVNP 308 A ++ G+E+ +A+ A+++A + ++F D+ + A G P++V V+P Sbjct: 345 ADQVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAADGLKPDVVFVDP 404 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER-VQLFDMFPHTAH 365 PR+G+ L +S M P+ +Y SCN T+A+D ++ GF I+ +Q D FP T H Sbjct: 405 PRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTH 464 Query: 366 YEVLTLLVK 374 E + + + Sbjct: 465 VESVLIFKR 473 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 380 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 109/386 (28%), Positives = 168/386 (43%), Gaps = 20/386 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGP--EQGFRNKA 59 C +D RC C W QL KT +K LL G +RNK Sbjct: 81 CPHFD--RCGGCVWQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKM 138 Query: 60 KMVVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + S LLG+ + L C + + + L Y+ Sbjct: 139 EFTFSPEG---LLGLHEQGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDT 195 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ----LPQLKVITVNIQ 173 G L+++++ ES + G +M+ ++ +L++A L E+ LP++K + Sbjct: 196 HEGLLRHVMVRESFATGEVMVAL-FATEAPEGELKQAADDLTERITKALPEVKSLLWLEN 254 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 ++ E L + + + + +FFQTNP A++L A + + P Sbjct: 255 RAWADRIQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQP 314 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST-- 291 + M DLFCGVG F L A L GIEI +I AK++A + G+ F A D+ Sbjct: 315 HEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDARRG 374 Query: 292 -QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 Q PEL+L++PPR G G + + P I+Y SCN +T A DI EL G Sbjct: 375 IDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVPFG 434 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 + ++ VQ DMFPHTAH E++ L+ + Sbjct: 435 YTLKTVQPVDMFPHTAHVELVALMSR 460 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 106/403 (26%), Positives = 176/403 (43%), Gaps = 33/403 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPV--SGPEQGFRNK 58 CA + G C C W P EQL K + + L + P+ S E+GFRNK Sbjct: 76 CAHF--GDCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNK 133 Query: 59 AKMVVSGSVEKPL-LGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + S + L LG+ R D+ +C L + A++ +GL ++ + Sbjct: 134 MEFAFSQDRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDS 193 Query: 117 RKRGELKYILLTE----------SQSDGG---------MMLRFVLRSDTKLAQLRKALPW 157 R+ G +++++ E + ++G ++ R + + Sbjct: 194 RQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEA 253 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAV 217 L + P++ + +++ I GE + + + L ER L + P SFFQTN A Sbjct: 254 LRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLGPDSFFQTNTAA 313 Query: 218 ASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAE 277 A LY AR P +WDL+ GVG LH A + G EI EA+ A+ +AA Sbjct: 314 AGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAAR 373 Query: 278 LGLTRLQFQALDS----TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSS 333 + F + D + +G P +V+V+PPR G+ + + + +S P I+Y S Sbjct: 374 NNILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIVYVS 433 Query: 334 CNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 CN TMA+D G+ ++ + D+FPH+ H E + LL + Sbjct: 434 CNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 167/398 (41%), Gaps = 28/398 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE--QGFRNK 58 C + G C C+W QL AK + L + P G+RNK Sbjct: 72 CRYF--GTCGGCKWQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNK 129 Query: 59 AKMVVSGSV-------------EKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALK 102 + S ++ LH G DL +C L + L+ Sbjct: 130 MEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELR 189 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F G P+++ R G L+++++ G +M+ V S A++ + +L EQ Sbjct: 190 AFFKAKGWEPWDIRRHEGYLRHLVIRTGTRTGEVMVNLVT-SRYDEARMAELGAFLQEQF 248 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 P++ + I + GE + + + I P +FFQTN A +LY Sbjct: 249 PEVTTLVNTINSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLY 308 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 AR+ P ++DL+CG G + A + G+E+ + A+ A+ +AA G+T Sbjct: 309 EVARELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITN 368 Query: 283 LQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 F A D + T P++V+V+PPR G+ + + + P +Y SCN QT Sbjct: 369 CTFVAGDLLEVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQT 428 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D++ L +RIE VQ D+FPHT H E + L + Sbjct: 429 QARDLKLLRDLYRIEAVQPVDLFPHTDHVESVVALRAR 466 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 163/388 (42%), Gaps = 21/388 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKA 59 +C C C P EQL K ++ +LL + E P+ G +RNKA Sbjct: 10 RCPY--EKWCGGCSMQGLPYKEQLKRKEKEVADLLKAYGRPE---PILGMNFPYYYRNKA 64 Query: 60 KMVVSGS-VEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V+ GS K + G R ++ C + + A+++ + + PYN Sbjct: 65 HAVLGGSLKGKIVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDT 124 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 RG L++I+ + G +ML V +K + L + P + I NI Sbjct: 125 GRGCLRHIIARRTADGGQIMLILVTA-QAAFPSRKKFVSALRKAHPNITTILQNINGQST 183 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +++ G+ L + +R I P +F+Q N +LY A D + + Sbjct: 184 SVVLGDRYEVLYGPGYIEDRLMGARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERV 243 Query: 238 WDLFCGVGGFGLH----CATPDM---QLTGIEIASEAIACAKQSAAELGLTRLQFQALDS 290 D +CG G G+ A +L G+E A+ A+ +A GL + +F D+ Sbjct: 244 LDTYCGTGTIGIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADA 303 Query: 291 TQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 F A+ G +LV ++PPR G + L + P I+Y SC+ +T A+D++ L Sbjct: 304 GAFMLAEAEAGRSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYLD 363 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + I R+ DMFP T E + LL K Sbjct: 364 SAYAIRRIAPVDMFPFTDGIENVVLLEK 391 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 155/384 (40%), Gaps = 19/384 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG-----PEQGFR 56 +C + G C C +QL K + N++ + AP++ +R Sbjct: 67 RCPHF--GYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRID--APINSVLPNFAFYRYR 122 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K S K +G R + DC + S V + + L Y Sbjct: 123 QKVHFTFGSSQNKLAIGYFDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAY--F 180 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G L+++++ +S + G + + + A L P+++ +T + P Sbjct: 181 NDAGVLRHLVVRKSSTTGEIQVV-ITAVKLNFNVKEIAAKILLN--PEIQSLTFHENPKK 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G+ + + E + + P SFFQ NP A ++Y A D++ Sbjct: 238 TREVFGKGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDM 297 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 ++D + GVG L A + G+E +A+ AK +A G+ + F A + + Sbjct: 298 VFDGYSGVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPW 357 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 +G ++++PPR G+ K + + + + P I+Y SCN T A+D++ L G+ Sbjct: 358 LLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYP 417 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 + DMF T H E + LL K+ Sbjct: 418 VEITPVDMFSQTMHVENVVLLKKK 441 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 107/382 (28%), Positives = 181/382 (47%), Gaps = 13/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGP--EQGFRNK 58 C C+ C + +QL K ++ L +P +P+ G+R Sbjct: 104 CP--SLRDCQGCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTS 161 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 AK+ V+ + ++G+ R D+ CPL+ + ++ IAR + YN Sbjct: 162 AKLAVARRNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVT 221 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +RG L+Y+L+ S + G M+ FV + ++ W+ ++P++ + N+ Sbjct: 222 RRGLLRYLLIKVSPATGKAMVTFVTA-QREYKRITALAKWVARKIPEVVSVQQNVNASSG 280 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + Q L ++ ++ L I P SFFQ N A A+++YA R W + Sbjct: 281 NVIMGRETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFA 340 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 DL+CG+GG LH A ++ G+E+ +A+ A+Q+AA L +F A D+ + Sbjct: 341 LDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDL 400 Query: 298 ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 ++NPPR G + ++ + PR IIY SCN T+A+D+ EL G+R Sbjct: 401 IVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKLGYRTA 460 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 +Q DMFP TAH E + LVK Sbjct: 461 EIQPVDMFPQTAHVESVARLVK 482 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 169/376 (44%), Gaps = 12/376 (3%) Query: 10 RCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGP--EQGFRNKAKMVVSG 65 +C CQ EQL K +++ L + P G +RNK + Sbjct: 83 KCGGCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNKIHLHAGR 142 Query: 66 SVEKPLLGMLHRDGTPED--LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 + +LG C + + A L+ I + L PYN K+G L+ Sbjct: 143 KNNRTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLLR 202 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 ++L ++++ G +ML V S L L Q P + I NI + +++ G Sbjct: 203 GVMLRKAEATGQVMLVLVTVSGN-LPGQSTFTRELVNQCPDITSIIRNINNGNNSLLLGS 261 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 + ++ + ++ D+ +I SF+Q NP +LY A ++ + + D +CG Sbjct: 262 VNKLIWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYCG 321 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP-- 301 +G ++ + ++TG+E + A+ A+++AA L ++F + + + Sbjct: 322 IGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKLLPEFAERNNN 381 Query: 302 -ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFD 358 ++++++PPR+G + + + ++ M IIY SCN T+A+D+ L G+ I VQ D Sbjct: 382 VDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLGYGIIEVQPVD 441 Query: 359 MFPHTAHYEVLTLLVK 374 MFP T+H E+ T L K Sbjct: 442 MFPQTSHIEICTFLSK 457 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 169/392 (43%), Gaps = 22/392 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF-----PVEEWCAPVSGP-EQGFR 56 C+ + G C C + P Q+ K +K L+ + E+ P E G+R Sbjct: 72 CSHF--GDCGGCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYR 129 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL LH+ G+ D+ DC L + + + L Sbjct: 130 NKMEFSFGDEFKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNY 189 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKL--AQLRKALPWLHEQLPQ------ 164 Y+ G L+++L+ + G +++ + S T + + L L E L Sbjct: 190 YHKMSHEGYLRHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGS 249 Query: 165 LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 + I + +++ + L Q + E + I SFFQTN A LY Sbjct: 250 IVGILHTVNDSLADVVQSDRTDILDGQDFIFEEVLGLKFKISTFSFFQTNSLGAEVLYNC 309 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 RD+V + K ++DL+ G G A ++ G+EI EA+ A+++A+ LT + Sbjct: 310 VRDFVGETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCE 369 Query: 285 FQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 F A D + + P+L++++PPR GI D + ++Y SC ++A+D+ Sbjct: 370 FIAGDVLKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSSLARDLV 429 Query: 345 ELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+ +E+V+ DMFP T H E + LL + Sbjct: 430 VLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 163/406 (40%), Gaps = 39/406 (9%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSG-PEQGFRNKAKMVV 63 A +C CQW QL AK + L E ++ G+RNK + Sbjct: 79 ADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPL 138 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S S E + ++ G+ +L CP+ F P+ +K I R Y+ ++ G Sbjct: 139 SISNEGEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGI 198 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTK-----LAQLRKALPWLHEQLPQLKVITVNIQPVH 176 L+++ L + G ++L V+ + L + E +L + +N Sbjct: 199 LRHLSLKIGEKTGEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLVGVCLNYNSKA 258 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G+ + + + + E+F+ + + P +FFQ N +L + + Sbjct: 259 TNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEI 318 Query: 237 MWDLFCGVGGFGLHCATPDMQL-------------------------TGIEIASEAIACA 271 + D +CGVG F L A Q+ G+E+ AI A Sbjct: 319 IVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQA 378 Query: 272 KQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 K +A LT + F + P++VL++PPR+G + + + L + P I+Y Sbjct: 379 KFNAKINHLTNVHFYEGKVERLLPQLEVKPDIVLLDPPRKGCDRSVLETLLEILPERIVY 438 Query: 332 SSCNAQTMAKDIRELPG---FRIERVQLFDMFPHTAHYEVLTLLVK 374 SC T+A+D++ L + + +VQ D FP TAH E L+K Sbjct: 439 ISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 101/393 (25%), Positives = 175/393 (44%), Gaps = 22/393 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE--QGFRNK 58 C Y C C ++ + K+ + A + P+ + +G+RNK Sbjct: 24 CPKYK--ICGGCVFMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNK 81 Query: 59 AKMVVSGSVEK-----PLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAG--- 109 A+ + P G R + C L PA+F + + + A Sbjct: 82 AQYPYADYKYTDNTVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNA 141 Query: 110 LTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTK--LAQLRKALPWLHEQLPQLKV 167 +TPYN G L+++ + + +M+ FV D QL L ++K Sbjct: 142 ITPYNEESGNGVLRHLYIRQGFHSKEIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKS 201 Query: 168 ITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 + +N+ P ++ G+ + L + +A+ VP+ + PQSF+Q N A A +L+A A+ Sbjct: 202 VMLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVPVSLSPQSFYQVNTAQAEKLFAEAKR 261 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + DL+CG G GL A ++ G+E+ +AI AK +A G++ +F A Sbjct: 262 LAAPKKDELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFA 321 Query: 288 LDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 D+ + A+G P++++++PPR+G D MAP I+ SCN T A+D Sbjct: 322 GDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPSTAARDAA 381 Query: 345 ELP--GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L GF ++ ++ D FP T H E + L+ +Q Sbjct: 382 YLCENGFTLDVLRPADFFPRTKHVECVVLMSRQ 414 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 173/383 (45%), Gaps = 15/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGPE-QGFRNKA 59 C +Y +C C QL AK +K+ E+ + G+RNK Sbjct: 71 CPVYT--KCGGCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKL 128 Query: 60 KMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + + L+ + C L P F + A LT Y+ Sbjct: 129 QIPIGTDKDGNLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETT 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +G L+++ L + G + L V+ + + +++ L E+ P++ +N+ Sbjct: 189 HKGILRHLYLRKGYYSGEICLCIVVAKN--VPEIKILSDRLLEKYPEIVSSVINVNNRDT 246 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G+ EI LT + + + + I P++F+Q N A QLY++A D+ K + Sbjct: 247 NVILGDEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEP-KGKTV 305 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-- 295 DL+CG G GL A ++ G+EI EAI AKQ+A G+T +F D+ + A Sbjct: 306 LDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARIL 365 Query: 296 -AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 ++ P++++V+PPR+G G+ C+ ++ + I+ SCNA T A+D G+ + Sbjct: 366 HSRNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAELGYSTD 425 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 + DMF T H E + LL + Sbjct: 426 KCVAVDMFSGTNHVETVVLLSHK 448 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 161/395 (40%), Gaps = 25/395 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRN 57 +C + RC C+ EQL KT +K+ LA E +G +RN Sbjct: 78 ECGRFS--RCGGCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRN 135 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE---------DLCDCPLYPASFAPVFAALKPFIARA 108 K V +K LG C L + A ++ + R Sbjct: 136 KVHFQVEERPDKIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNRH 195 Query: 109 GLTPYNV----ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ 164 R+ ++I+L + G +M V S + + + L P Sbjct: 196 RGPFGRRILPQKRQSRFFRHIVLRKGFFTGEVMAVLVTGSG-EWPGEKAFVKELLSLRPG 254 Query: 165 LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYAT 224 L + NI ++ G+ L ++ + +R + I P SF+Q NP LY Sbjct: 255 LVSLVRNINDGPPGVLFGKKSRCLAGREHIKDRLGHLIFRISPSSFYQVNPVQTLVLYNK 314 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQ 284 + + + + D + G+G L A ++ G+E +A+A A+++AA +T + Sbjct: 315 VQQYAALTGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAE 374 Query: 285 FQALDSTQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 F AQG PE+V+++PPR G G+ + + + M ++Y SCN T+A+ Sbjct: 375 FLTGKVESLIPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATLAR 434 Query: 342 DIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 D+R G+ ++ VQ DMFP TAH E + L+ + Sbjct: 435 DLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 94/401 (23%), Positives = 169/401 (42%), Gaps = 30/401 (7%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPE--QGFRN 57 +C + G C C+W M P EQL AK + + L E P+ G E +RN Sbjct: 111 KCQHF--GICGGCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRN 168 Query: 58 KAKMVV-------------SGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAAL 101 K + + H G + C L + + Sbjct: 169 KLEFGCSNKRWLTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCI 228 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRK--ALPWLH 159 + + ++ +++ + G L+ I++ S + G M+ + + + R L + Sbjct: 229 RDYAIDHDISFFDLRAQTGLLRDIMIR-SANTGEWMVLVQFKFQEEGDEQRAHGLLQHVA 287 Query: 160 EQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 + PQ+ + +T + + + E D+ + +SF+QTN A Sbjct: 288 DSFPQITSLLYVDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAKSFYQTNTNQAY 347 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 LY+ AR++ + + ++DL+ G G A ++ GIE +AI AK ++A Sbjct: 348 HLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAAND 407 Query: 280 LTRLQFQALD----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 + QF A D T+ A+ P++++ +PPR G+ + + AP+ I+Y SCN Sbjct: 408 IHNTQFYAGDMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCN 467 Query: 336 AQTMAKDIREL-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T A+D++ L +++ VQ DMFPHT H E + LL ++ Sbjct: 468 PATQARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 8/373 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVSGPE--QGFRNKAKMVVS 64 AG+C C + Q K L+N L E P+ + G+RN+A + V Sbjct: 78 AGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQ 137 Query: 65 GSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 G R ++ CP+ + LK + AG YN ++G L+ Sbjct: 138 ERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLR 197 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 ++L S G ++L V+R D + ++ ++ P+L + +N+QP + G Sbjct: 198 QLVLRAGVSSGEVLLGVVVR-DDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGP 256 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 E L + L E F I +FFQ + A L R ++ + + D +CG Sbjct: 257 KERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCG 316 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPEL 303 VG GL ++L GIE + E+I A+ +A GL F A + ++ Sbjct: 317 VGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTDV 376 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG---FRIERVQLFDMF 360 +L++PPR+G+ +C+ + P + Y SCN T+A+D+ L F + +V FD F Sbjct: 377 LLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQRFELTKVVPFDFF 436 Query: 361 PHTAHYEVLTLLV 373 P T H E + +L Sbjct: 437 PQTTHIEAMAILT 449 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 158/400 (39%), Gaps = 30/400 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQ--GFRNK 58 C + G C C+W P EQL AK + + L+ + P+ G + +RNK Sbjct: 105 CQHF--GVCGGCKWQNLPYEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNK 162 Query: 59 AKMVVSGSV-------------EKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALK 102 + S + H G + C L + ++ Sbjct: 163 LEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIR 222 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ--LRKALPWLHE 160 + G++ +++ ++ G L+ +++ S G M+ +T Q L + E Sbjct: 223 DYALTKGISFFDLRQQTGLLRDVMIRNSD-TGEWMVLVQFHFETATDQQTAEALLAHVGE 281 Query: 161 QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 PQ+ + + E D+ + P+SF+QTN A Sbjct: 282 HFPQITSLLWVDNQKCNDTFGDLPVHVFKGNGHIFEVMEDLRFKVGPKSFYQTNTQQAYH 341 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY AR + + ++DL+ G G A ++ G+E EAI AK ++ G+ Sbjct: 342 LYDVARRFASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGI 401 Query: 281 TRLQFQALDSTQFATAQ----GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 + F A D + P++++ +PPR G+ + + + P+ I+Y SCN Sbjct: 402 SNTTFYAGDMKDILNDEFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNP 461 Query: 337 QTMAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T A+D+ L + + VQ DMFPHT H E + LL ++ Sbjct: 462 ATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 501 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 373 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 15/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-----FPVEEWCAPVSGPEQGFRN 57 C +Y +C CQ QL K ++N + + E +RN Sbjct: 77 CPIYS--QCGGCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRN 134 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 K++ V + + G+ + + +C + V A+ + + YN A Sbjct: 135 KSQFAVGKEGTQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSA 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ G ++ I++ G + + V D L ++ +P + + +NI Sbjct: 195 KQDGVIRNIVVRTGIKTGEIQVVLVAFKDG-FKDLEGLSRDIY-DIPGVISVALNINDKM 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + GE L + + E+ + + P++FFQ NP A ++Y + Sbjct: 253 TSRVFGEQTEILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEER 312 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF--- 293 + D + GVG GL A ++ G+EI EA+ A + G Q+ + + Sbjct: 313 VVDAYAGVGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPR 372 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +G +P++ +V+PPR G L + + + + IIY SCN QT+A+D L G+++ Sbjct: 373 WVKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKAGYKV 432 Query: 352 ERVQLFDMFPHTAHYEVLTLLV 373 +Q +DMFP TAH E + +L Sbjct: 433 SYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 159/396 (40%), Gaps = 28/396 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV----SGPEQGFRNK 58 C + G C CQW QL+AK +K L + P Q +RNK Sbjct: 75 CMHF--GVCGGCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNK 132 Query: 59 AKMVVSGSV-------------EKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKP 103 + S ++ LG D+ C L + A+ Sbjct: 133 LEYTFSNKRWLTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQ 192 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP 163 F G + Y+ +G L+ +++ + S G +M+ + + + + ++ ++ P Sbjct: 193 FAREHGYSFYDFRSHQGLLRNLIVRTT-STGEVMVIVQFGENQEGP-IVHIMDFIQKKFP 250 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 L + + + Q + E + + I P+SFFQTN A LY Sbjct: 251 TLTSLQYIVNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQ 310 Query: 224 TARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRL 283 T D + ++DL+ GVG A Q+ GIE+ AI A+ +A L+ + Sbjct: 311 TVADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNV 370 Query: 284 QFQALDSTQFATAQG----DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 F D + P++++ +PPR G+ + L +AP IIY SCN T Sbjct: 371 SFWLGDMKDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQ 430 Query: 340 AKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 A+DI +L + + Q DMFPHT+H E + +LVK Sbjct: 431 ARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 156/381 (40%), Gaps = 14/381 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA---PVSGPE-QGFRN 57 +C + G C C W P QL K + LA V+ PE G+RN Sbjct: 72 RCPHF--GVCGGCDWQRLDYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRN 129 Query: 58 KAKMVVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + + LG+ R D+ CPL V A++ GL Y+ Sbjct: 130 KMEFAF---AGRLHLGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDP 186 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKL-AQLRKALPWLHEQLPQLKVITVNIQP 174 +G ++++L +S+ DG + + + L + P+L +++ Sbjct: 187 RTGKGVWRHLVLRDSRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPELTGFVHSVRR 246 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + GE + + + L E+ L + P +F QTN A LY P Sbjct: 247 APTPVAHGERQSIVLGRGHLTEKMGQATLRVLPDAFAQTNTGAAQSLYEIVTREASSDPA 306 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ-ALDSTQF 293 DL+CG GG L+ A ++ G++I +I AK SA F+ A + Sbjct: 307 GTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVFEAADAADAL 366 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIE 352 GD P +V+++PPR G + + AP ++Y SCN T+A+D++ L + + Sbjct: 367 DDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDVT 426 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 V D+FPHTAH E + L Sbjct: 427 SVTPVDLFPHTAHIEAVASLT 447 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 16/387 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGP-EQGFRNK 58 C + G C C W P P QL+ K +++ L E + P +QGFRNK Sbjct: 74 CPHF--GDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNK 131 Query: 59 AKMVVSGSVEKPL-LGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + + L LG+ R G D+ C L A+ V + +GL ++ A Sbjct: 132 MEFAFTTDDREMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDA 191 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ-LRKALPWLHEQLPQLKVITVNIQPV 175 RG +++++ E G +++ + + R L + +P++ +I+ Sbjct: 192 AHRGFWRFLVVREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQ 251 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + G+ ++ + L E+ + L +F QTN LY + Sbjct: 252 NSQVAYGDATVFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGRE 311 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 H+WDL+CGVG L A + G+E ++ A+++A G T F A D Sbjct: 312 HVWDLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLR 371 Query: 296 AQGDV------PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PG 348 ++ P++V+ +PPR G+ + D L AP I+Y SC+ TMA+D+ L Sbjct: 372 SRSKGKAQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQR 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + + + D+FPHT H E + LL + Sbjct: 432 YTLHEARPVDLFPHTPHVETVVLLSNK 458 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 16/383 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV----SGPEQGFRNK 58 C + C C W P QL K + + + S ++ FRNK Sbjct: 77 CRHF--AECGGCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNK 134 Query: 59 AKMVVSGS-VEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + LG+ R ++ +C L + +++ + A+ GLT ++V Sbjct: 135 MEFAFENDSPQGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVR 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTK-----LAQLRKALPWLHEQLPQLKVITVN 171 G +Y+++ E+ G M++ + + +R+ L E + Sbjct: 195 SGEGFFRYLVIRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHG 254 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + + E +Y T L E+ N + P +FFQTN A L TA D+ Q Sbjct: 255 ERRSPVQAAYAEKTLYSTGDSHLTEQLNGRTFTMAPHAFFQTNTAATEILSRTAADYAGQ 314 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 +WDL+CGVG GL A +TG+E++ EA+ A +A + + +F A D Sbjct: 315 GG--VLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVR 372 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFR 350 + + P++V+ +PPR G+ + L + APR I+Y SC+ T A+D L +R Sbjct: 373 RLLIRHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDAAALTDSYR 432 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 +E VQ DMFPH+AH E + L Sbjct: 433 LEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 161/385 (41%), Gaps = 32/385 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV--EEWCAPVSGP--EQGFRNK 58 C + G C CQ + QL K ++N+L E P+ G +RNK Sbjct: 71 CPSF--GSCGGCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNK 128 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE----DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 ++ V+ KP+LG+ D C + + L I + Sbjct: 129 VRLHVAWEGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKH------ 182 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 A L + L + + G M+ S+ ++ ++ + L +P V+ Sbjct: 183 -AEMLAGLTAVSLRLAAATGETMVVLEGASE-HYSRWKRLVDELTAAVPVTTVV------ 234 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + E L + + + + + + SF+Q NP S+LY ++ Sbjct: 235 ---RVGARGKEEVLYGEGHITDSLDGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGR 291 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + + D +CGVG L A Q+ GIEI+ EA+A A +AA+ GL+ + F + + Sbjct: 292 ERVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVL 351 Query: 295 TAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 +LV+++PPR+G+ + + L +IY SCN T+A+D+ L G+ Sbjct: 352 PELLAREGMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGY 411 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 R++ VQ DMFPHT H E + L + Sbjct: 412 RVQEVQPVDMFPHTYHVECVAYLCR 436 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 172/385 (44%), Gaps = 17/385 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGF 55 QC ++D+ C CQ + P+QL K ++ L F + + G + Sbjct: 73 QCPIFDS--CGGCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHY 130 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 R K + K + G+ + +C + S + + + + + YN Sbjct: 131 RAKLQFQTRSFSGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIYN 190 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 + G L+ I++ ++ + + + F+ + LA + + + + P++K + +NI Sbjct: 191 ERKIEG-LRTIMIRKAIASQTLQIIFITSKEVHLAPI---ILDMTKTYPEIKTVALNINR 246 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + + G+ + Q + E D + P++F+Q NP S LYA + + Sbjct: 247 SKSSELYGDKTEIIWGQDTIEEEVLDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSES 306 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 H+ D +CGVG G A + G++I EAI AK++A ++G ++ + Sbjct: 307 DHIIDAYCGVGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDII 366 Query: 295 TAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FR 350 G + ++V+PPR G+ K L + + T P ++Y SCN T+A+D+ EL + Sbjct: 367 PKWYQDGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKVYT 426 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ +Q DMFPHTA E + L ++ Sbjct: 427 VDYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 163/377 (43%), Gaps = 13/377 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPE--QGFRNKAK 60 C + GRC C W+ QL K L +L ++ V + +R K + Sbjct: 68 CRYF--GRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKME 125 Query: 61 MVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 G LG+ R+ D+ DC + P + +K + + YN ++ Sbjct: 126 FHFQGRK----LGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRK 181 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G LK++++ + S M+ FV +++ R + + ++ P++ I + + Sbjct: 182 GVLKHLVIRYAFSTDQFMVIFVTKTE-SFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVV 240 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G L + + E F+ I P +FFQ+N ++ S+L + + D Sbjct: 241 LRGP-YKTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLD 299 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 L+ G+G F + + ++ +E + A+ K +A +++ D F Sbjct: 300 LYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSG 359 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 + ++++PPR G G + ++ ++P I+Y SC+ T+ +D++ L G+ I RV+ F Sbjct: 360 RADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPF 419 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T H E LVK Sbjct: 420 DMFPQTYHVETAVTLVK 436 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 155/382 (40%), Gaps = 18/382 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGP--EQGFRNK 58 C + C CQ QL K + N + + P G +RNK Sbjct: 77 CPFFQ--ECGGCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNK 134 Query: 59 AKMVVSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V KP LG+ + ++ C + V ++ + YN Sbjct: 135 FQIPVKPIGGKPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCE- 193 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 LK+I+ + L FV S+ K+ + L L + L I NI Sbjct: 194 ----LKHIISRVGDKTDQVQLTFVTGSE-KIDNKQMILEPLKNGMANLVGIVQNINKKPR 248 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + G+ L ++ L + D + +F+Q NP+ LY + + V+++ Sbjct: 249 GNVLGDRFKTLWGREYLMDNLLDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENV 308 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA- 296 D++CG+G L A ++ GIEIA EA+ A + G F + T Sbjct: 309 MDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAEDEKTES 368 Query: 297 --QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 Q PE+V+++PPR+G + L L + P I Y SCN T+A+D+ +L G+ E Sbjct: 369 IIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPE 428 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 Q DMFP T H EV+ +L K Sbjct: 429 LFQPVDMFPQTTHIEVICILTK 450 >UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNL8_9FIRM Length = 386 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 11/379 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG--PEQGFRNK 58 MQC +Y RC C + QP Q+ K A L+ L +E P+ +R+K Sbjct: 1 MQCRVYR--RCGGCSMLEQPYANQIRWKQAVLERLF----PKETVLPMLKDKNPDHYRHK 54 Query: 59 AKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + LG+ + + + DC + + L L+ Y R Sbjct: 55 IYATFGKNAQGIFLGLYGYHNHRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDR 114 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 ++G L+++ L S D +M+ VL + K +K + L E+ P+++ + +N Sbjct: 115 RKGLLRHVYLRISSKDEKVMMVLVL-GEKKFPGSKKLVKILLEKHPEIETVILNYNFRKT 173 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ GE E + + L ++ + + I SF+Q NP A +LY A + + Sbjct: 174 SIVLGEQERVVYGKGYLMDKIDGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKV 233 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D G G L A + GIE+ +A+ A ++ + +QF + Sbjct: 234 VDACSGTGTISLLLARHVQSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRY 293 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQL 356 +++ ++PPR G+G YL + I+Y SC+ T A+DI+ L + I Q Sbjct: 294 RIQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSITVSQG 353 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFP T + E + +L ++ Sbjct: 354 VDMFPQTKNIENILVLERK 372 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 150/381 (39%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C + G C C + Q+ K + LL V+ +S +RNK + Sbjct: 73 CPSF--GFCGGCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFS 130 Query: 63 VSGSVEKPLLGMLHRD--GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + LG+ + + C + F V +K F + YN G Sbjct: 131 FFNNKGIADLGLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEG 190 Query: 121 ELKYILLTESQSDGGMMLRFVLRS-DTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 ++++L ++ ++ ++ + D + L + L E I Sbjct: 191 FFRHLVLRKAGNNNQFLINVITNVVDCESVFLEPLIKELSEF---SCSIYWTSNGRKSDA 247 Query: 180 MEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + + + + ER N D I P SFFQTN LY + Sbjct: 248 VLADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYT 307 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DL+CG G G+ A ++ G+E +AI AK++A + +F A D+ + Sbjct: 308 VLLDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIK 367 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GFRIE 352 + V+V+PPR G+ K + +L + IIY SCN T+A+D++ + +I+ Sbjct: 368 ENKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCKIK 427 Query: 353 RVQLFDMFPHTAHYEVLTLLV 373 + DMFP T H E + LL Sbjct: 428 EIIPVDMFPQTYHIETVVLLE 448 >UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Coriobacteriaceae RepID=C8WNQ3_EGGLE Length = 438 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 159/410 (38%), Gaps = 41/410 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNK-- 58 C + C +CQ + P +QL++K + L AD P+ G +RNK Sbjct: 22 CPV--ERECGACQHVGVPYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVV 79 Query: 59 --------------AKMVVSGSVEKP-------------LLGMLHRDGT-PEDLCDCPLY 90 A+ L GM C + Sbjct: 80 SPYAPGRKLQGSANARAGKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIE 139 Query: 91 PASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ 150 + ++ + R G+ PY G L++ ++ + G +++ V Sbjct: 140 NEEAKRIIRTVRDLMPRFGIEPYREDSGTGFLRHAVVRVGHTSGEILVTLVTNG-RAFPA 198 Query: 151 LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSF 210 R L + P++ + N+ ++ GE E L + ++ + I QSF Sbjct: 199 SRAFCRELVRRCPRITSVVQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSF 258 Query: 211 FQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATP-DMQLTGIEIASEAIA 269 +Q N LY A D + D +CG G GL A Q+ G++ + A+ Sbjct: 259 YQVNAVQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVR 318 Query: 270 CAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAP 326 A+++A G+ +F D+ F + GD +++L++PPR G + T+AP Sbjct: 319 DARENAKHNGVENARFAVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAP 378 Query: 327 RFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 R I+Y SCN T +D+ L G+ + VQ DMFPHT H E + L+ + Sbjct: 379 RRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 168/384 (43%), Gaps = 14/384 (3%) Query: 1 MQCALYDAGR-CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRN 57 +QC + A C C W+M EQL K L L + F ++ + Q +RN Sbjct: 67 VQCPSFAAEIPCGGCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRN 126 Query: 58 KAKMVVSGSV--EKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 K M V + K GM R + C +P F + +L F +A + PYN Sbjct: 127 KVFMPVGKNYQTGKITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYN 186 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 +G+L++I + +++ V S KL + L + PQ+K I NI Sbjct: 187 EIEHKGQLRHIGFRCNSDGRQILVILVTLSG-KLPFTNLLVKKLTTEFPQIKGIIQNINR 245 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ G+ L + L + + I +SF+Q N + + +D+V Sbjct: 246 QKENVILGKETKLLYGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVNSNN- 304 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + D +CG+G GL A ++ +E +AI AK++A GL + F Sbjct: 305 -VILDAYCGIGAIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNL 363 Query: 295 TA--QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGF 349 +A + P+ ++++PPR G+ + + + + IIY SC T+A+D+ L + Sbjct: 364 SAVLIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKY 423 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 ++ +Q FDMFP+T H E L +L Sbjct: 424 KVVFLQPFDMFPNTWHIECLAVLK 447 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 165/384 (42%), Gaps = 14/384 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG-----PEQGFR 56 +C ++D C CQ QL K +++ L + + +R Sbjct: 75 KCNVFDL--CGGCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYR 132 Query: 57 NKAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NK + V + K G+ T DL +C + +K ++ + Sbjct: 133 NKNQFPVEKTGRKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKN 192 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + +++I+ + + G + + FV + + L +L +K + +NI Sbjct: 193 PMREKGVRHIVTRVALATGEIQVVFVTNTRHLKK--QDLLAERVMRLAGVKSVALNINTE 250 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 +I+ G+ I + ++ + E+ D + +SFFQ NP LY RD + Sbjct: 251 KTSIVMGDETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQE 310 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--- 292 ++ D FCG G G+ A ++ G++ + I A +A G +F+ D+++ Sbjct: 311 NVVDAFCGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASEKLN 370 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRI 351 +G P+++ V+PPR G+ + ++ + P+ +Y+SCN T+AKD+ L F++ Sbjct: 371 EWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTKAFQV 430 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 E +Q DMFP TA E + L ++ Sbjct: 431 EYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C7R2N2_JONDD Length = 382 Score = 366 bits (939), Expect = e-99, Method: Composition-based stats. Identities = 182/379 (48%), Positives = 246/379 (64%), Gaps = 6/379 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC +DA RCRSC + P QL+ K AD+ LL ++P +W PV+ + GFRNKAK Sbjct: 1 MQCHHFDAHRCRSCALLDIPYERQLATKAADVHALLGEYPDLDWLPPVASAQAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 M VSG+ + P+LG+L DL DCPLY V A++ FI A + PY VA +RG Sbjct: 61 MAVSGTADNPILGILDASFGGVDLRDCPLYTQGMQEVLDAVRAFIMAARIEPYRVADRRG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELKY+L+TES D M+RFV RS + ++ K LP + PQ++V+TVN+QP H AI+ Sbjct: 121 ELKYVLVTESP-DSEYMVRFVARSQEPVTRISKHLPGWLAENPQVRVVTVNLQPEHKAIL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG+ EI LT+ +L R D+PL++RPQSFFQTN VA+ LY A W+ +H+WDL Sbjct: 180 EGDREIVLTKDNSLTMRVGDIPLYLRPQSFFQTNTPVAAHLYRQAEQWIADARPQHVWDL 239 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA-----T 295 FCGVGGF LH A ++TG+EI++EAI A+ SAAE LT + F ALD+T F+ Sbjct: 240 FCGVGGFALHAAPHANRVTGVEISAEAIESARTSAAERALTNVTFDALDATTFSTGHSAR 299 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQ 355 P+LV+VNPPRRGIG L ++L+ ++YSSCNA+++AKD+ +P F+ R + Sbjct: 300 LADGGPDLVVVNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQPTRAR 359 Query: 356 LFDMFPHTAHYEVLTLLVK 374 LFDMFPHT H E + L+ K Sbjct: 360 LFDMFPHTNHVETVVLMSK 378 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 101/379 (26%), Positives = 163/379 (43%), Gaps = 11/379 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C + RC C + + K L L D E+ S QG+RNK + Sbjct: 69 CPV--NERCGGCIYQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRNKMEYT 126 Query: 63 VSGS-VEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 S PL+ LH ++ D C + F + A++ + + + Sbjct: 127 FGDSVKGGPLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKH 186 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G L++ ++ +S SD M+ V SD + + + + ++ I I Sbjct: 187 TGLLRHFIIRKSFSDDEYMINLVTTSDKF--DVNDFVEFAKQIDNRIVSIYHTINDNISD 244 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + + L ++ L E+ N + I P SFFQ NPA A Q+Y A + L K+++ Sbjct: 245 AVIVDKLELLHGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVY 304 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DL+CG G A + G+EI EA+ AK++A GLT +F D F Sbjct: 305 DLYCGTGTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEK-V 363 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 + ++V+++PPR GI D L + P IY SCN T D+ + G+ I+ ++ Sbjct: 364 EKKDVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLEF 423 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 FD FP T H E + LL ++ Sbjct: 424 FDQFPRTYHCEAVVLLSRK 442 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 169/389 (43%), Gaps = 20/389 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP-------VSGPEQGF 55 C + G C C P Q K + L P S E G+ Sbjct: 78 CEYF--GSCGGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGY 135 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 RNK + G + LG R ++ CPL P A + A ++ + A + Y Sbjct: 136 RNKMEFSFHGIGDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAY 195 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + G + +++ S G MM+ + ++ L + +PQLK + + Sbjct: 196 -RHNRGGYWRKLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTR 254 Query: 174 PVHMAIMEGETEIYLTEQQALAERF-----NDVPLWIRPQSFFQTNPAVASQLYATARDW 228 + GE I +T Q+ + E ++V I P +FFQTN A LY + + Sbjct: 255 KGRADLATGERLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSEL 314 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 +WDLFCG GG G+ A ++ GIE++ E++ AK +AA GL Q+ Sbjct: 315 AAPKADDVVWDLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVG 374 Query: 289 DS--TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + + P++V+V+PPR G+ P L + P I+Y SCN T+A+D ++ Sbjct: 375 NLASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKM 434 Query: 347 PG-FRIERVQLFDMFPHTAHYEVLTLLVK 374 G +++ER DMFPHTAH E + LL K Sbjct: 435 EGRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 11/383 (2%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV--SGPEQGFRNK 58 M+C + C C + Q K D++ L+ ++ V + + +RNK Sbjct: 1 MKCKV--EKLCGGCSLLKLKPSMQADKKKKDVEVLVEKAHLKVRVGDVHMAKNDTHYRNK 58 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + K G+ +C + P + + + L YN Sbjct: 59 VIVGFAKDKGKVYSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERT 118 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G L+++L+ +M+ FV S + + L + PQ+K I NI P Sbjct: 119 GTGLLRHVLIRWGHKTDEVMVVFVT-SQKMFPSRKNMVRVLTSEFPQIKTIVQNINPRKT 177 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ + I L + + + + SF+Q + LY A+ + + Sbjct: 178 SIVLQDEAIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTV 237 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D +CGVG GL ++ G+E+ +AI AK +A + + ++F A+DST+F Sbjct: 238 LDTYCGVGTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQA 297 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 + + ++++PPR G K + + + PR I+Y SC+ +T +D+ + G+ Sbjct: 298 RKYHNRYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGYVTN 357 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +++L D+FP+T H E + +L K+ Sbjct: 358 KLELVDLFPYTDHIESVCVLEKK 380 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 16/385 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS----GPEQGFRNK 58 C Y+ C CQ QL K+ +++ L + +S + G+RNK Sbjct: 66 CRWYET--CGGCQLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNK 123 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A V + G + CPL A ++ L+ + G + Y+ Sbjct: 124 ASFPVRRTASGETTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKT 183 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQ---LRKALPWLHEQLPQLKVITVNIQP 174 RG L++I++ S G++ V+ S LR +L + P L + ++I P Sbjct: 184 GRGWLRHIVVRASTYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLALSINP 243 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + G+ + + + E L SFFQ N A A++L+ A V Sbjct: 244 SRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVPD--G 301 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 +L+CGVG A +T EI A+ A+++ + LT ++ + + + Sbjct: 302 SRTLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKLP 361 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + + + ++V+PPR G + L+ + + I+Y SCN T+A+D L G+++ Sbjct: 362 SDLFEGQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAGYQLV 421 Query: 353 --RVQLFDMFPHTAHYEVLTLLVKQ 375 V+ FDMFP T+H E + LL ++ Sbjct: 422 TSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 164/373 (43%), Gaps = 11/373 (2%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGPEQGFRNKAKMVVSGSVE 68 C + M QL K ++ ++ S +RNK S Sbjct: 92 GCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYAN 151 Query: 69 KPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 K + G R ++ + L + LK + + ++ Y+ +G L+ I++ Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMI 211 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 + S+ M+ ++ S+ ++K L L E + ++K I +++ + GE I Sbjct: 212 R-TNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIGEKNIL 270 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 + ++++ E N + I P SFFQ N A +LY A + + K++ D + G G Sbjct: 271 IYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTI 330 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPELV 304 G+ A ++ IEI A +++A E G+ ++F + + + Sbjct: 331 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNNQKIDTI 390 Query: 305 LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPH 362 + +PPR+G+ + D ++ + + ++Y SCN T A+D++ G+ ++++Q DMFP Sbjct: 391 IFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAVDMFPQ 450 Query: 363 TAHYEVLTLLVKQ 375 T+H E + L+ ++ Sbjct: 451 TSHIECVGLIERK 463 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 363 bits (932), Expect = 7e-99, Method: Composition-based stats. Identities = 115/379 (30%), Positives = 189/379 (49%), Gaps = 11/379 (2%) Query: 7 DAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGP-EQGFRNKAKMV 62 AG C C I+ P+QL+ K + + + E A + P + +RN AK+V Sbjct: 90 RAGSCDGCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLV 149 Query: 63 VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 VSG+ +P++G+ R+ D+ CPL+ V A+K IA+ + YN G Sbjct: 150 VSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGL 209 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+Y+++ S+ G M FV + ++ L + +PQ++V+ N+ ++ Sbjct: 210 LRYLVVRISERTGTAMAVFVT-VERNYNEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVIL 268 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ + +LT Q AL E + I P+SFFQ N A +Y T R W + + DL+ Sbjct: 269 GQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLY 328 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT---AQG 298 CG+GG L A ++ GIE+ A+ A+ +A + F+A D+ + +G Sbjct: 329 CGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEEG 388 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 + +LV++NPPR+G + + ++ P I+Y SC T+A+D+ L G+ RVQ Sbjct: 389 ERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLGYATLRVQP 448 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFP T H E + LLVK+ Sbjct: 449 VDMFPQTPHVENIALLVKK 467 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 363 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 159/363 (43%), Gaps = 10/363 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--VEEWCAPVSGPEQ--GFRNKAKMVV 63 A +C CQW QL K + L + + P+ Q G+RNKA + Sbjct: 76 ADKCGGCQWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPL 135 Query: 64 SGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 S + ++ + +L CP+ + A +K I + G + YN +G Sbjct: 136 GYSKFGNVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGH 195 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L+++ L Q+ G ++L + + + ++++ E+ P L + VN + Sbjct: 196 LRHLALRIGQNSGEVLLTLISTTGN-ITKIKEQAKLWLERYPNLVGVLVNKNSEKNNKIF 254 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G + + L ERF ++ +RP +FFQ N A L + D + + + D + Sbjct: 255 GNQTFSIVGKPFLKERFFNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAY 314 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CG+G F L A GIEI+ ++I AK +A + ++F P Sbjct: 315 CGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLNIFP 374 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GFRIERVQLFD 358 ++VL++PPR+G + + L + P IIY SC T+A+D++++ ++I VQ D Sbjct: 375 DIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKICYQNLYKILWVQPVD 434 Query: 359 MFP 361 FP Sbjct: 435 FFP 437 >UniRef50_C1RQ79 23S rRNA m(5)U-747 methyltransferase n=2 Tax=Actinomycetales RepID=C1RQ79_9CELL Length = 374 Score = 363 bits (931), Expect = 9e-99, Method: Composition-based stats. Identities = 180/374 (48%), Positives = 244/374 (65%), Gaps = 1/374 (0%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+C +DAG CRSC + QP PEQL+A+ ++ +L D P W V+ GFRNKAK Sbjct: 1 MRCGYFDAGVCRSCTLLAQPYPEQLAAQERHVRAVLGDPPGVTWLPTVTSAAAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 MVV+G+VE P LG+L G DL CPLYP + + F+ L F+ RA LTPY+V + G Sbjct: 61 MVVAGTVEAPTLGILDGHGHGVDLQGCPLYPPAVSAAFSPLADFVTRARLTPYDVPTRTG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++L+ DG +M+RFVLRS LA++RK LP L LP L V +VN+QP H A++ Sbjct: 121 ELKHVLV-TGSPDGELMVRFVLRSTEALARIRKHLPRLQTDLPHLVVASVNVQPAHAAVL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EGE EI LT ++ L N + L +RP+SFFQTN VA+ LY A W + V WDL Sbjct: 180 EGEREIPLTARETLRMHVNGLDLHLRPRSFFQTNTEVAAALYRQALAWADEAAVTSAWDL 239 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300 +CGVGGF LH A Q+ G+E ++EA+ A+ +A + GL +F A D+T FA DV Sbjct: 240 YCGVGGFALHLARAGRQVVGVEASAEAVVSAELTARDAGLPGTRFVAGDATAFALDATDV 299 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+LV+VNPPRRG+G+PL +L ++YSSC+A ++A+D+ +P R+ R Q+ DMF Sbjct: 300 PDLVVVNPPRRGLGEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSLRLVRAQVLDMF 359 Query: 361 PHTAHYEVLTLLVK 374 PHTAH+EVLTLL + Sbjct: 360 PHTAHHEVLTLLER 373 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 95/424 (22%), Positives = 166/424 (39%), Gaps = 55/424 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-----WCAPVSGP-EQGFR 56 C AG C C + P QL K +K L+ D +E + P + G+R Sbjct: 73 CVH--AGECGGCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYR 130 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL +H+ G+ D+ +C + F + + + +T Sbjct: 131 NKMEFSFGDEFKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITY 190 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQL--------------------- 151 Y+ R G L+++L+ ++ G +++ V + T + Sbjct: 191 YHKLRHTGYLRHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFA 250 Query: 152 ---RKALPWLHEQLPQ------LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVP 202 + L L + I + E L Q E + Sbjct: 251 GTEEELLEGWKAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEELLGLR 310 Query: 203 LWIRPQSFFQTNPAVASQLYATARDWVRQL-----------PVKHMWDLFCGVGGFGLHC 251 I P SFFQTN A LY TAR+++ K ++DL+ G G Sbjct: 311 FKITPFSFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQML 370 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 + ++ G+EI EA+ AK++A GL +F A D + + + P+ ++++PPR Sbjct: 371 SPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSIEEKPDYIVLDPPRD 430 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVL 369 GI + + ++Y SC ++A+D+ L G+ +++V DMFP T H E + Sbjct: 431 GINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMFPSTFHVESV 490 Query: 370 TLLV 373 L+ Sbjct: 491 VLMQ 494 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 161/379 (42%), Gaps = 12/379 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFRNKAKM 61 A + QL+ K + L F + W G +RNKA+ Sbjct: 120 ADEVGGFELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQF 179 Query: 62 VVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 V + +GM R DL + V ++ + + ++ YN + RG Sbjct: 180 PVRKIDDVLSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRG 239 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 +K I+ S + G + L FV +D + +++ LP++ I N P +++ Sbjct: 240 TVKTIVARVSHTTGDVQLTFVTNTDG-FPGDVALIAAINQALPEVNGIFQNFNPGRTSLV 298 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 GE I L + + E + P++F Q N + +Y A + + D Sbjct: 299 WGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDA 358 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQ 297 + GVG GL A ++ G+EI EA+ A +A ++ +++ + A+ Sbjct: 359 YAGVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAE 418 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQL 356 G + + ++V+PPR G+ L + P +Y SCNA T+A+D+ +L ++++ +Q Sbjct: 419 GWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTKAYKVDYIQS 478 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFP TA +E + L ++ Sbjct: 479 IDMFPQTARWEGVVKLTRR 497 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 168/380 (44%), Gaps = 9/380 (2%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C Y C C + P +L K +K L D EE S + +RNK + Sbjct: 73 CPNYI--ECGGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYT 130 Query: 63 V-SGSVEKPLLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + P++ +H+ D +C L F + A+ F+ L Sbjct: 131 FADMYKDSPIMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTH 190 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-PQLKVITVNIQPVHM 177 G L+++++ + + G +M+ V + ++ L +L +K I Sbjct: 191 EGLLRHLIIRYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLA 250 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + E + ++ + E+ D+ + P SFFQ N A LY+ A + + K + Sbjct: 251 DAVVPEKINIIFGKEYITEKIFDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVV 310 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 +DL+ G G G A + GIEI EA+ A +SA E GLT F A D + + Sbjct: 311 FDLYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIENR 370 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 ++ ++++V+PPR GI + + + + + I+Y SCN +T +DI+ L G+++ ++ Sbjct: 371 KEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQNGYKLITLK 430 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 +F+ FP T H E + LL ++ Sbjct: 431 IFNQFPRTVHCEAVALLERR 450 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 165/384 (42%), Gaps = 17/384 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE----WCAPVSGP--EQGFR 56 C +Y+ C CQ + +QL KT L L F P G + +R Sbjct: 73 CTIYN--ECGGCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYR 130 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K + + G+ ++ +L DC + + L + + + Sbjct: 131 AKLQFQTRKFKNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDE 190 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + G ++ I++ ++ G + + V L QL + L + P++ + VN Sbjct: 191 RKVLG-VRTIMVRRARKTGQVQIIIVTNRQLNLTQL---VKELVKDFPEVVTVAVNTNTA 246 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + GE + Q+++ E + + P++F+Q NP LY+ A + Sbjct: 247 KTSEIYGEKTEIIWGQESIQEGVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKED 306 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 H+ D +CGVG G A L G++I EAI AK++A +G ++A + + Sbjct: 307 HLIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIP 366 Query: 296 ---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRI 351 +G + ++V+PPR G+ L D + T P ++Y SCN T+A+D+ L + + Sbjct: 367 RWYKEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDL 426 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 +Q DMFPHTA E + L+K+ Sbjct: 427 HYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 99/405 (24%), Positives = 167/405 (41%), Gaps = 36/405 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPEQ--GFRNK 58 C + C C+W P QL AK + + L E P+ G EQ +RNK Sbjct: 63 CTHFT--VCGGCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNK 120 Query: 59 AKMVV----------------SGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFA 99 + S E H G D+ +C L + Sbjct: 121 LEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRL 180 Query: 100 ALKPFIAR--AGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW 157 ++ + + +++ + G ++ +++ + S G +M+ V D A+ L Sbjct: 181 FIREYCMQDPERYPFFDLRNQEGLMRTLMIRTT-STGELMVVVVFFRDDVAAR-EALLAA 238 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAV 217 + E+ PQ+ + I + + + ++ + E + I +SF+QTN Sbjct: 239 VAERFPQITSLLYVINTKCNDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQ 298 Query: 218 ASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAE 277 A QLY AR++ + ++DL+ G G A ++ GIE EAI A+ ++ Sbjct: 299 AYQLYRIAREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLL 358 Query: 278 LGLTRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSS 333 G+ F A D T Q P++V+ +PPR G+ + + D + APR I+Y S Sbjct: 359 NGIENTLFYAGDMKDILTNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVS 418 Query: 334 CNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 CN T A+D+ L +R + + DMFPHT H E + LLV+ Sbjct: 419 CNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVRN 463 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 154/387 (39%), Gaps = 19/387 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGPEQGFRNK 58 C L+ G C CQ P QLS K +++ + E +S + G+RNK Sbjct: 72 CPLF--GCCGGCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNK 129 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFI----ARAGLTPY 113 A + V +G L CP+ V ++ F+ L+PY Sbjct: 130 AIVPVRSQGRGWGMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPY 189 Query: 114 NVARK-RGELKYILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVIT 169 + G L+ +++ G +++ V+R D + L+ L L + + ++ Sbjct: 190 REGDRPSGSLREVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLL--EGLGVVGLS 247 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 V + + + + E + L SFFQ N A +++ D + Sbjct: 248 VFRNRRDANFVWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLL 307 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 + + + +L+ GVG A ++ +E A+ +++ G+ + Sbjct: 308 DETGARDVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGA 367 Query: 290 STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--P 347 + G + V+++PPR G + + A +IY SCN T+A+D+ L Sbjct: 368 AEDVLGDLGGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLMLLSQG 427 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + RV+ FDMFP T H E +TL+ + Sbjct: 428 GYVLRRVRPFDMFPQTCHVECVTLMSR 454 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 187/382 (48%), Gaps = 13/382 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQ--GFRNK 58 C ++ C C I +Q K + L + + P+ P + +R Sbjct: 106 CR--ESAHCLGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTT 163 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ ++G +P +G+ R DLCDCP++ V ++ I+R + Y+ Sbjct: 164 VRLTIAGKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRN 223 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + G L+Y+++ S+++ M+ FV ++ ++ EQLP+++V+ N+ Sbjct: 224 RVGLLRYLVVRVSEAEQKAMVVFVTA-RRSYNEIHHLARYVREQLPEVEVVAQNVNSSEG 282 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + +LT + L ER +V L I P+SF Q N A +Y +W R + + Sbjct: 283 NVIMGPVDHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETV 342 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---QFA 294 DL+CG+GG L A ++ G+E+ A+ A+++A G++ FQA D + Sbjct: 343 LDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAEQLEEL 402 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 G+ ++V++NPPR+G + + ++ + PR ++Y SC+ QT+A+D+ L G+ Sbjct: 403 AEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSLGYVCV 462 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 VQ DMFPHT H E + L K Sbjct: 463 EVQPVDMFPHTMHVENVARLEK 484 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 157/418 (37%), Gaps = 51/418 (12%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP--------VEEWCAPVSGP--E 52 C A C C+ QL AK + L+ +E P+ + Sbjct: 139 CEY--ASYCGGCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQ 196 Query: 53 QGFRNKAKMVVS-------------GSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAP 96 +RNK + K LH G ++ C L Sbjct: 197 FHYRNKMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNL 256 Query: 97 VFAALKPFIA--RAGLTPYNVARKRGELKYILLTESQS--DG--GMMLRFVLRSDTKLAQ 150 V AA++ L+PY+ G LK+++L ++ G +M+ FV S Sbjct: 257 VLAAVQDCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKP-EL 315 Query: 151 LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSF 210 L+ + + +PQ+ I N+ GE E L + + E + I SF Sbjct: 316 LKPLVDRI-SSIPQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSF 374 Query: 211 FQTNPAVASQLYATARDWVRQLPV--KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAI 268 FQTN A LY + + + DLFCG G GL A + G E+ +AI Sbjct: 375 FQTNTHQAEVLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAI 434 Query: 269 ACAKQSAAELGLTRLQFQALDSTQFATAQGD---VPELVLVNPPRRGIGKPLCDYLSTMA 325 A ++A G+ F D + G+ P++V+ +P R G+ L +L + Sbjct: 435 TDAHKNAQINGIENATFIQGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLK 494 Query: 326 PRFIIYSSCNAQTMAKDIRELPG----------FRIERVQLFDMFPHTAHYEVLTLLV 373 IIY SCN T A+D+ L +++ VQ DMFPHT H E + LL Sbjct: 495 SPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLE 552 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 162/407 (39%), Gaps = 38/407 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSG--PEQGFRN 57 +C ++ G C C+W P EQL K+ + + P+ G +RN Sbjct: 75 RCEVF--GACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRN 132 Query: 58 KAKMVVSGSV---------------EKPLLG-MLHRDGTPEDL-----CDCPLYPASFAP 96 K + S E+ L G H+ G + + C + + Sbjct: 133 KVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASE 192 Query: 97 VFAALKPFI--ARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKA 154 + L + Y+ G ++ +L+ + G ++ + ++ + Sbjct: 193 IRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGG--LMVLIAFAEGTEELRVQL 250 Query: 155 LPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 L L E+ PQ+ + + + + + E + + I P+SF+QTN Sbjct: 251 LEALRERFPQITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENMHGLRYRIGPKSFYQTN 310 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 A +LY R++ + + ++DL+ G G + A + GIE EA+ A + Sbjct: 311 SRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVN 370 Query: 275 AAELGLTRLQFQALD----STQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 + G+T F A D T A P++++ +PPR G+ P+ + + AP+ I+ Sbjct: 371 RDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIV 430 Query: 331 YSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SCN T A+D+ L +R + DMFPHT H E + LL K Sbjct: 431 YVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSK 477 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 160/388 (41%), Gaps = 18/388 (4%) Query: 1 MQ-CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPE-QGFR 56 MQ C+++ +C C + EQL K ++ +L + + +R Sbjct: 1 MQICSVFK--KCGGCSKLHINYEEQLKIKEKNVLSLFDQYQIKPNNYHGITPSVDIYEYR 58 Query: 57 NKAKMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTP 112 NK + + PL+ L G D+ DC L F + + F + + Sbjct: 59 NKMEYSFGNEYKDGPLVLGLRGKGKKFDVYYTKDCKLVDYDFNNIVIKTREFFLKKNIPF 118 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW--LHEQLP-QLKVIT 169 N G L+ + + + G ++L V D Q + L+ L + I Sbjct: 119 RNYKNHSGFLRNLGIRKGLKTGEILLNLVTSLDNTYYQEVETWKEEMLNTNLKGNIVSII 178 Query: 170 VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 + +++ + L + E+ D+ I P SFFQTN LY TA + Sbjct: 179 QSKTESKANVVKADEMEILYGRDYFYEKILDLTFKIGPFSFFQTNTKGTEVLYQTALSYA 238 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 ++D + G G L A ++ GIEI EA+ AKQ+A + ++F D Sbjct: 239 E--NSDVVYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKD 296 Query: 290 STQFATAQG--DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 F Q + P+ ++V+PPR G+ L ++ T IIY SCN +T+ +++EL Sbjct: 297 VKDFVKQQSSTEKPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNLKELS 356 Query: 348 G-FRIERVQLFDMFPHTAHYEVLTLLVK 374 + I L DMFPHT H E + L+ + Sbjct: 357 DLYTISDFHLVDMFPHTDHVESVVLMTR 384 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 354 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 164/384 (42%), Gaps = 13/384 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV--SGPEQGFRNKA 59 +C++Y +C SCQ + + Q K + L + V +G +RNK Sbjct: 71 KCSIY--AKCGSCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHYRNKM 128 Query: 60 KMVVSGSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + +K + + C L+P + ++ I + + Y+ R Sbjct: 129 IIGFQKGRDKRIKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDEDR 188 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + G L+++L+ + +M + S RK + L + P + I N+ P Sbjct: 189 RTGLLRHVLIRYGKVTKQIM-VVFVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPRKT 247 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ G E L + + + + I +SF+Q N LY A D + + + Sbjct: 248 SIVLGNEERILYGKGYIEDILCGLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNEVV 307 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D +CG+G G+ A+ Q+ G+E+ +A+ A Q+A + ++F D+ F Sbjct: 308 LDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQL 367 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 ++++++PPR G + + + I+Y SCN T +DIR L G+R+E Sbjct: 368 AKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLGYRVE 427 Query: 353 -RVQLFDMFPHTAHYEVLTLLVKQ 375 + L DMFP T E + +LV++ Sbjct: 428 GSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 173/393 (44%), Gaps = 25/393 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---APVSGPE-QGFRNK 58 CA + G C C PEQL+ K A + L + AP P+ G+RNK Sbjct: 73 CAHF--GTCGGCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNK 130 Query: 59 AKMVVSGSVEKPLLGMLH-------RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 + + LG+ R G D+ C L A + A++ F A G+ Sbjct: 131 MEFAFEQREDGLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVP 190 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWL-HEQLPQLKVITV 170 YN A + G +++++ + + G +M+ + D + L K + L ++ P+L Sbjct: 191 AYNPATESGFWRHLVIRHAAA-GEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVH 249 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERF----NDVPLWIRPQSFFQTNPAVASQLYATAR 226 + + + GE +Y + ER +V + P +FFQTN AS+L+ T Sbjct: 250 STRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVA 309 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 ++ + DL+CG G G++ A ++ G E + EA+ A++SA GLT F Sbjct: 310 EFCALSDTHVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFV 369 Query: 287 ALDSTQFATAQGDVPELV-----LVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 + Q + +V+PPR G+ + + L + I+ SC+ T+A+ Sbjct: 370 SGSLEQGIPGFAGSGDQAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVSCDPATLAR 429 Query: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLLV 373 D++ L + + RV+ DMFPHT H E + LL Sbjct: 430 DVKRLADRYHVTRVRAVDMFPHTHHIETVALLE 462 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 102/417 (24%), Positives = 170/417 (40%), Gaps = 47/417 (11%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGPEQGF--RNKA 59 C Y G C C + P EQL K+ +K +L + + G + RNK Sbjct: 74 CKNY--GLCGGCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILGSPNEWETRNKM 131 Query: 60 KMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S P+ LH+ G D+ DC + F V + A ++ YN Sbjct: 132 EYAFGDSYKGGPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFYNK 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSD------------------------------ 145 A RG L+++L+ + G +++ SD Sbjct: 192 AMHRGYLRHLLVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDKDK 251 Query: 146 TKLAQLRKALPWLHEQL------PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFN 199 + + L + E+L ++ I I ++ E + L + + E Sbjct: 252 EQSQAEKNILAKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEELL 311 Query: 200 DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLT 259 + I SFFQTN A LY+ R++V ++DL+ G G G + ++ Sbjct: 312 GLKFKITTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKKVI 371 Query: 260 GIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCD 319 GIEI EA+ A ++A GLT +F A D + + P+ ++++PPR G+ Sbjct: 372 GIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLDEVKEKPDFIILDPPRDGVSPKALK 431 Query: 320 YLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + + R I+Y +C ++ +DI E G+R+++V L DMFP T H E + LL K Sbjct: 432 RVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLLSK 488 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 159/384 (41%), Gaps = 14/384 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP-VEEWCAPVSGPE--QGFRNKA 59 C A +C C + +P EQL K +K L+ + P+ +RNK Sbjct: 8 CMH--ADKCGGCTYQGKPSYEQLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKM 65 Query: 60 KMVVSGSV--EKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S + LG + D+ C L + + A++ F + YN Sbjct: 66 EFTFGNSEREGELKLGFHEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNK 125 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL---PQLKVITVNI 172 + G L+++++ +++ V S ++ L L +L I + Sbjct: 126 KKHNGFLRHLVIRSGIRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTV 185 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 GE L + ER D+ +R SFFQTN A LY A + + + Sbjct: 186 NDKIQDTANGEDIRILYGRDYYMERIMDLDFKVRMGSFFQTNVQAAENLYRYAINSIDNV 245 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ 292 K ++DLFCG G A ++ G++I+ +AI A ++ + + F D + Sbjct: 246 QDKVIFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFE 305 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 + P++++++PPR G+ + + +PR I+Y SCN +T+ ++ + Sbjct: 306 VIRNINEKPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFEYNRYN 365 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 I+ ++ FD F T+H E + LL K Sbjct: 366 IKSLKAFDNFFFTSHVEAVALLSK 389 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 353 bits (905), Expect = 9e-96, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 158/383 (41%), Gaps = 14/383 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGPEQ-GFRNKAK 60 C C C + +QL K + N++ ++ + P G+RN+ Sbjct: 95 CKH--NKECGGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPINIGYRNRMD 152 Query: 61 MVVSGSV-EKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 PL LH+ D+ DC + F + + + + YN Sbjct: 153 YTFGDGYIGGPLECGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKI 212 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ--LPQLKVITVNIQP 174 + G L+ +L+ +++ +M + S + L + L E + L I I Sbjct: 213 KHTGYLRNLLIRKAKKTNEIMYCLITSSQLTI-DLNELKNKLLELPLMGNLVSIIHCIFD 271 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 I+ L + E + I P SFFQTN A LY T R+++ Sbjct: 272 DITDIVGYNKMEILYGNDYITEELLGLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKC 331 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS-TQF 293 ++DL+CG G + ++ G+E+ +AI AK +A LT +F+ D + Sbjct: 332 DIIFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVNNEL 391 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 Q + PEL++++PPR GI + + IIY SC T+ +D+ L G+++ Sbjct: 392 DQLQENRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLIILEQNGYKV 451 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + L DMFP+T H E + LL K Sbjct: 452 KNITLVDMFPNTPHIETVCLLKK 474 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 148/377 (39%), Gaps = 22/377 (5%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGP--EQGFRNKAKMVVSGSV- 67 W + P QL K+ + + L P+ +RNK + Sbjct: 86 GAPWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGT 145 Query: 68 --EKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 L+ H G + DC L V + F GLT Y+ +RG L Sbjct: 146 AERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFL 205 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 + ++ E + G +R V + + + Sbjct: 206 RNCVIREGRRTGQFQVRLVTMPG-------ELDREAFAEAVDCDGLLWTQFDGLGETTAE 258 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + L E N + + P +FFQ N +A +LYA A D+ + ++DL+C Sbjct: 259 GDTELIAGSDYLEEELNGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYC 318 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD---STQFATAQGD 299 G+G GL A +L G+EI +AI A +A + +F A D + + Sbjct: 319 GIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVDTAG 378 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 P++V+V+PPR G+ + + + +P+ ++Y SCN T+A + +L G+ + +V+ Sbjct: 379 SPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAGYVLRKVRPV 438 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFP T H E + L + Sbjct: 439 DMFPQTPHIECVALFER 455 >UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NR03_9MICC Length = 409 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 173/377 (45%), Positives = 247/377 (65%), Gaps = 4/377 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA++P +W PV+ E GFRNKAK Sbjct: 33 MECAYFRDDLCSSCPRIETAYTAQVQAKQEHARALLANYPQLQWLDPVTSAEAGFRNKAK 92 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 93 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 152 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL E+LP L V++VN+ +A Sbjct: 153 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMGWLQERLPNLAVLSVNLLREPVAR 211 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 212 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 271 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 272 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVSS 331 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 332 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 391 Query: 358 DMFPHTAHYEVLTLLVK 374 DMFPHT HYEV+TLL + Sbjct: 392 DMFPHTDHYEVMTLLKR 408 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 90/379 (23%), Positives = 161/379 (42%), Gaps = 13/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGPEQGFRNK 58 C + C C W QL K ++ ++ S +RN+ Sbjct: 67 CKGFP--DCGGCDWGGLQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNR 124 Query: 59 AKMVVSGSVEKPLLGMLHR-DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + V +K GM R D+ DC L F V + ++R G+ PYN Sbjct: 125 MEYVAYQKGKKIGFGMYKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRES 184 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 KRG LK+++L +++ ++ ++ ++ K + EQLP++ + Sbjct: 185 KRGFLKHLVLRGNRNGD--IVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDD 242 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + + E D + P SFFQ N V +L + + P + Sbjct: 243 VVLRGP-YRVIYGEGIITETLGDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETF 301 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 DL+ G+G F + A ++ +E + +A ++ L+ +D+ F Sbjct: 302 LDLYSGIGTFAFYFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEKN 361 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQ 355 + + V+++PPR GIGK + + P+ I+Y SCN T+A+D R L GF ++ ++ Sbjct: 362 EEKFDKVILDPPRAGIGKD-IELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALR 420 Query: 356 LFDMFPHTAHYEVLTLLVK 374 FDMFP T H EV+ + + Sbjct: 421 AFDMFPDTHHVEVVAIFNR 439 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 169/383 (44%), Gaps = 17/383 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNK 58 M+C + A +C SCQ+I Q + L K + K + D + PVSG +RNK Sbjct: 1 MKCDI--AKKCGSCQFINQGYVKSLEYKNEECKKIFKDL--KVNVHPVSGMEDPYYYRNK 56 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + G+ + C ++ + + + + ++ Y+ R Sbjct: 57 TIIAFDKTYN---YGLYEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQR 113 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +RGE+++IL+ + ++ V + + L + P +K I +N Sbjct: 114 RRGEIRHILIRRAVKTNQTLVVIVSN-EAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQT 172 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 +I+ GE E L + + + + I P+SF+Q N LY+ A + + Sbjct: 173 SIVLGEQEKVLFGKGFIVDELCGMTFKISPRSFYQINHDQCEALYSKALSLITV-KDPKI 231 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D +CG+G GL + Q+ G+E+ +A+ AK + + ++F D+T+F Sbjct: 232 MDTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVEA 291 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 Q ++++++PPR G + ++ P+ I+Y SC+ T +D++ G+ + Sbjct: 292 AKQKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFK 351 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 V +DMFP T+H E + LL + Sbjct: 352 DVYPYDMFPFTSHVETVVLLSHK 374 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 168/379 (44%), Gaps = 12/379 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE----WCAPVSGP--EQGFRNKAKM 61 AG + P QL+ K ++ L + P G +RNKA+ Sbjct: 103 AGEVGGFELEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQF 162 Query: 62 VVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 V G+ + DL C + + V + ++ + Y+ G Sbjct: 163 QVRLIDGHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSG 222 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 +K I++ E+ + G + L F+ + KL + + L + E+LP + + NI +++ Sbjct: 223 IVKTIVVREAAATGEIQLVFITNTP-KLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLI 281 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 G+ L + + E + + + ++FFQ NP +LY AR+ + P + + D Sbjct: 282 WGDQTTLLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDA 341 Query: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQ 297 + GVG GL A ++ G++ A+A A +A +T ++ ++ A Sbjct: 342 YSGVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLAS 401 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQL 356 G P+ ++V+PPR G+ L D + AP ++Y SCN T+A+D++ L G++++ +Q Sbjct: 402 GFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQS 461 Query: 357 FDMFPHTAHYEVLTLLVKQ 375 DMFP TA E + K+ Sbjct: 462 IDMFPQTARCEAVVRFTKR 480 >UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococcaceae RepID=C6R4A2_9MICC Length = 377 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 174/378 (46%), Positives = 245/378 (64%), Gaps = 4/378 (1%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M+CA + C SC I Q+ AK + LLA P +W PV+ E GFRNKAK Sbjct: 1 MECAYFRDDLCSSCPSIETAYTAQVQAKQEHARALLAAHPQLQWLDPVTSAEAGFRNKAK 60 Query: 61 MVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +VV GS + P LG++ +R G DL +CPLY L+ I RA LTPY++ +R Sbjct: 61 LVVGGSAKNPTLGIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRR 120 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK IL+T S + G +M+RFVLRS L +R+ + WL EQLP L V++VN+ +A Sbjct: 121 GELKNILVTASAA-GELMVRFVLRSKKLLVPIRRQMDWLQEQLPNLAVLSVNLLREPVAR 179 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 +EG+ EI L+E+Q L + ND+ L +RPQSFFQTN VA +YA R+WVR++ + +WD Sbjct: 180 VEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWD 239 Query: 240 LFCGVGGFGLHCAT--PDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 L+CGVGGF LH A+ +TGIEI++EA+A A+++ AE GL + F A D+ +FA + Sbjct: 240 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVSS 299 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLF 357 G VP++++VNPPRRGIG+ LC ++ ++YSSCNA T+AKD+ +P + + ++ Sbjct: 300 GTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL 359 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT HYEV+ LL +Q Sbjct: 360 DMFPHTDHYEVMVLLQRQ 377 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 160/385 (41%), Gaps = 18/385 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG----PEQGFRNK 58 C Y + C CQ Q K + L E + E +RNK Sbjct: 67 CRWYRS--CGGCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNK 124 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 A V +G R + CP+ ++A +K I Y+ Sbjct: 125 ASFPVRARGRAGDVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKS 184 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVITVNIQP 174 G L+++++ ++ ++L V + + L L + L E+ P+L+ + VN+ P Sbjct: 185 NSGWLRHVVIRSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNP 244 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 ++ G + + + L ER + L SFFQ NP A QL+A A Sbjct: 245 DEGNVIIGAESVLVKGEDRLTERLGNFRLDYDGTSFFQANPGQAEQLFAYA---ASLAEG 301 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 +++ +L+CGVG + + +E+ + A+A A+++ + L + Sbjct: 302 QNLLELYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVV 361 Query: 295 -TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 A + + V+V+PPR G K L + ++ ++Y SCN T+A+D L G+ + Sbjct: 362 APADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLRDAGYVL 421 Query: 352 --ERVQLFDMFPHTAHYEVLTLLVK 374 + +++FDMFP T H E + LL K Sbjct: 422 DMDSLKVFDMFPQTCHVETVCLLSK 446 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 167/392 (42%), Gaps = 34/392 (8%) Query: 17 IMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQ--GFRNKAKMVVSGSVEKP 70 + P QL K ++ L + W G E G+RNK + V + Sbjct: 86 MHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDGT 145 Query: 71 LLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 ++ L+++GT +L +C + + + I + L Y+ K G ++ +++ Sbjct: 146 VIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDER-KIGGIRTVMVR 204 Query: 129 ESQSDGGMMLRFVLRSD--------------------TKLAQLRKALPWLHEQLPQLKVI 168 SQ G + + FV + + K L L E+ ++ + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 169 TVNIQPVHMAIMEGETEIYLT-EQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD 227 VN P + + GE L E++ + E D + P++F+Q N A+ LY A Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + D +CGVG G A + G++I E+I A+++A LGL ++ Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 288 LDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 + + G ++V+PPR G+ L + ++ P ++Y SCN T+AKD+ Sbjct: 385 GKAERIIPNWNKSGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYVSCNVSTLAKDLV 444 Query: 345 ELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L +++E +Q DMFPHTA E + L K+ Sbjct: 445 VLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8Q1_ATOPD Length = 415 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 166/405 (40%), Gaps = 40/405 (9%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGP--EQGFRNKAKMVV 63 A RC C+W+ P P QL K A ++ LLA P+ G +R+KA Sbjct: 11 ARRCGGCEWLSVPYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHKAATPF 70 Query: 64 SGSVEKPLLGMLHRDGTPEDL--CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + + + + GT + + +C + + + + + Y R +G Sbjct: 71 APGKGRTVRSGFYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDRGKGA 130 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L++ ++ + +ML V+ L ++ + L + P+L I +N+ + Sbjct: 131 LRHAVVRCGYATDDVMLVLVVNGQR-LPHEQEFIAALRKAHPELTSIFLNVNQKRTNAIL 189 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV------------ 229 G L +++++ + I P SF+QTNP LY A D Sbjct: 190 GRETRLLWGSTSMSDKLLNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQTGATLT 249 Query: 230 ---------RQLPVKHMWDLFCGVGGFGLHCATPDMQ------LTGIEIASEAIACAKQS 274 + D +CG G GL A LTG++ I A+++ Sbjct: 250 EASTQTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQMARRN 309 Query: 275 AAELGLTRLQFQALDSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 A L +F D+T++ A G ++++++PPR G + +A + I+Y Sbjct: 310 ARNNKLE-AEFICDDATRYMQALAKDGQNFDVIILDPPRAGSTPAFLKATAQLAQKKIVY 368 Query: 332 SSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 SCN T A+D++ L GF IERV DMFPHT H E + +L + Sbjct: 369 VSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 18/376 (4%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPE--QGFRNKAKMVVS 64 A C CQ EQLS K ++ ++ P+ + +RNK ++ + Sbjct: 74 ARLCGGCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKVQVPIQ 133 Query: 65 GSVEKPLLGMLHRDGTPEDL-CDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 LG + DC + + +K F+ + LT + Sbjct: 134 EKDGLAQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTS--------NFR 185 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGE 183 Y+ + +M+ ++R + + +K L ++ P + + P ++ Sbjct: 186 YLFIRHIHQRNEVMVMPIVR-EYPFEKSKKLALELVKEFPNITSFSYLKNPKETNVILDG 244 Query: 184 TEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCG 243 + L E + + +SFFQ NP LY A + + DL+CG Sbjct: 245 PIFEVIGPLFLEESLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCG 304 Query: 244 VGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDV 300 G G+ A ++ GIEI EAI AK +A L+F +D+ A + Sbjct: 305 TGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKES 364 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFD 358 ++V+V+PPR+G + M P+ ++Y SC+ T+A+D+ L GF++E VQ D Sbjct: 365 IDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVD 424 Query: 359 MFPHTAHYEVLTLLVK 374 +FP T H E + L+ + Sbjct: 425 LFPQTVHVECIALIQR 440 >UniRef50_Q4QLU9 23S rRNA (uracil-5-)-methyltransferase rumB n=82 Tax=Gammaproteobacteria RepID=RUMB_HAEI8 Length = 392 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 213/388 (54%), Positives = 274/388 (70%), Gaps = 13/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF--PVEEWCAPVSGPEQGFRNK 58 + C Y CRSCQW+ P +QL+ K LK L +W AP EQ FRNK Sbjct: 2 IDCRYYQQNECRSCQWLEIPYSQQLAEKQHHLKQQLISINCDKAQWLAPFQSNEQCFRNK 61 Query: 59 AKMVVSGSVEKPLLGMLHRDG---TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 AKM+VSGSVE+P+LG+L + DLCDCPLYPA F+ +F+ LK FI RAGL PYN+ Sbjct: 62 AKMLVSGSVERPILGILKNPNDPQSAIDLCDCPLYPARFSIIFSILKDFIGRAGLVPYNI 121 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 A+++GELKYILLTES + G +MLRFVLR++ KL +R+ LP L E+LP L+V++VN+QP+ Sbjct: 122 AKQKGELKYILLTESIATGKLMLRFVLRTENKLPLIRRELPKLLEKLPHLEVVSVNLQPL 181 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 H AI+EGE EI+LTEQQ L E FN +PL+IRPQ FFQTNP VA LYATA+ WV +LP+ Sbjct: 182 HAAILEGEQEIFLTEQQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWVSELPIY 241 Query: 236 HMWDLFCGVGGFGLHCATPDM-------QLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 ++WDLFCGVGGFGLHCA +LTGIEI+S AI A SA LGL + FQ+L Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSL 301 Query: 289 DSTQFATAQGD-VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 D+ + + P+LV+VNPPRRGIGK L ++L+ + P FI+YSSCNA TM KD++ L Sbjct: 302 DAASVIENKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLT 361 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ ++QLFDMFP T+HYEVL LL ++ Sbjct: 362 CYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 169/390 (43%), Gaps = 23/390 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKM 61 C Y C C + +QL K +++ F E + P +Q +R+K ++ Sbjct: 9 CQHYP--ECAGCDRLHIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQL 66 Query: 62 VVSGSVEK----PLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 LG+ +++ T D +C + V AA++ + L PY+ Sbjct: 67 PFGHRKIGKKSVLTLGLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEK 126 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL----------PQLK 166 + G L++I+L ++ + +++ V ++++ +K L+ + + Sbjct: 127 KGSGLLRHIVLRKANATQEILVGIVTN-ESEIPGRKKLTDRLYSYIQQFLYKENSKADVV 185 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I N+ + ++ GE E+ + + E+ + I +FFQ NP LY Sbjct: 186 GILQNVNRKNTKVVLGEKEVTWYGRHFVKEKIGKLDFQIGLSTFFQVNPFQIENLYNLIL 245 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 + + + K + D +CG+G L+ A+ ++ G+E S +I A ++ G+ + F Sbjct: 246 EDLPEN--KCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFI 303 Query: 287 ALDSTQ-FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 A + ++V+++PPR G+ L I+Y SCN +T+ +D E Sbjct: 304 KGKVLDTLRAALNENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAIE 363 Query: 346 L-PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L F+ E++ D+FPHT+H E +++ K Sbjct: 364 LTKSFKYEKITPVDLFPHTSHLESVSVFTK 393 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 92/403 (22%), Positives = 158/403 (39%), Gaps = 34/403 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE------WCAPVSGPE--QG 54 C ++ RC C W QL+ K + +++ + + + Sbjct: 73 CPHFE--RCGGCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTER 130 Query: 55 FRNKAKMVVS-GSVEKPLLGMLHRDGTPEDLCD------CPLYPASFAPVFAALKPFIAR 107 +RNK + G+ + ++ L G DL + C L V + + Sbjct: 131 YRNKMEFAFGPGANGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRGCRAHLDS 190 Query: 108 AG----LTPYNVARKRGELKYILLTES-QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 G L +N G L+ + + + +G + + + T+ AL L E + Sbjct: 191 NGNSSLLDAFNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAALRGLAEAI 250 Query: 163 PQLKVITVNIQPVHMAIME-GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQL 221 +++ + + GE L+ L + V + SFFQTN A +L Sbjct: 251 AKVRGVASSGGGDADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKL 310 Query: 222 YATARDWVRQLPV--KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 A D + + DLFCGVG GL A + G E+ EA+ A+++A G Sbjct: 311 VAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANG 370 Query: 280 LTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTM 339 +T F+ D + A P++V+ +P R G+ + L L ++ I+Y SCN T Sbjct: 371 ITNATFRRGDLAKL-KASLPGPDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNPATQ 429 Query: 340 AKDIRELPG--------FRIERVQLFDMFPHTAHYEVLTLLVK 374 A+D+ L G + + DMFPHT H E + +L + Sbjct: 430 ARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 94/419 (22%), Positives = 153/419 (36%), Gaps = 64/419 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGP--EQGFRNK 58 C +A C C QL K + + L PV G G+RNK Sbjct: 68 CP--EAASCGGCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNK 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V LG CPL P A+ + Sbjct: 126 VRLHVRR----GRLGFYRPGSHELAPFSCCPLLPPGLLKAARAIVRLLPELP-------- 173 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVIT-------- 169 L+++ L + + G +++ + R+ L + P+L + Sbjct: 174 --PGLQHVTLRQGLATGELLVVL--EALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRS 229 Query: 170 ----------------------------VNIQPVHMAIMEGETEIYLTEQQALAERFNDV 201 Q + G L + L ER D+ Sbjct: 230 RSGPKDFAGEPALECSGWVKTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLGDL 289 Query: 202 PLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGI 261 +I +FFQ N A A LY A + + + D +CG G L + ++ G+ Sbjct: 290 RFYISATTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGV 349 Query: 262 EIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDVPELVLVNPPRRGIGKPLC 318 E+ EAI A++++ L + F+ + +G PE+++++PPR G + + Sbjct: 350 EVVPEAIVDARRNSILNNLANVHFRTGAAEAVLPRLAGKGYRPEVIILDPPRAGCDRRVL 409 Query: 319 DYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++TM PR ++Y SCN T+A+D+ L GF+ VQ DMFPHT H E LVK+ Sbjct: 410 AAVATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 94/400 (23%), Positives = 168/400 (42%), Gaps = 31/400 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKAK 60 C + G C C W P QL K ++NL + E +W + + +RNK + Sbjct: 43 CMHF--GSCGGCCWQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKME 100 Query: 61 MVVSGSVEKPLLGML---HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + S L G + +C L FA A++ + + + Y+ + Sbjct: 101 LTFSSDKAGRRYLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIK 160 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLA----QLRKALPWLHEQL-----PQLKVI 168 RG L+ + L E G ++ + + A QL+ + L + + Q + Sbjct: 161 DRGSLRTLTLREGLRTGDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSV 220 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFN---------DVPLWIRPQSFFQTNPAVAS 219 + IQ + E+ L + E+ + I P +FFQ N A Sbjct: 221 FLRIQQIAKGRPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAE 280 Query: 220 QLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG 279 +LY+ A ++DL+CG G G+ A ++ GIE++ E++ A+++ E G Sbjct: 281 KLYSQALKLADLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENG 340 Query: 280 LTRLQFQALDSTQFATAQGD----VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCN 335 L+ + ++ D Q A P++V+V+PPR G+ ++ + ++Y SCN Sbjct: 341 LSNVTIKSGDVGQVLEALSQENSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCN 400 Query: 336 AQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 +T ++ L G++++ VQ D FP T H E +TLL Sbjct: 401 PKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_C5C2M0 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Actinomycetales RepID=C5C2M0_BEUC1 Length = 376 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 179/376 (47%), Positives = 237/376 (63%), Gaps = 3/376 (0%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 MQC+ YDA CRSC I +P +QL+ K A + L W P E+ FRNKAK Sbjct: 1 MQCSYYDAALCRSCTLIERPYADQLAGKQAHARAALTGHDGVAWLPPHPSAEEQFRNKAK 60 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 MVV+GS P++G+L DG DL C L+ + L F+ARA L PY++ +RG Sbjct: 61 MVVTGSAVDPVIGILGPDGEGVDLRWCGLHEPPVTAALSPLAEFVARANLAPYDLRTRRG 120 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELKY+L+T S DG +M+RFVLRS LA++RK LP L E LP+L V +VN+QP H A++ Sbjct: 121 ELKYLLVTASP-DGEVMVRFVLRSTEALARIRKHLPALQEALPRLAVASVNVQPEHSAVL 179 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG TEI LT Q L N + L +RPQSFFQTN AVA+ LY A DW+ +L + DL Sbjct: 180 EGPTEIPLTPAQTLRMAVNGLDLHLRPQSFFQTNTAVAAALYREATDWIDELAPSSVVDL 239 Query: 241 FCGVGGFGLHCATPD--MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 +CGVG F LH A D ++ G+E ++EAIA A SAA+ GL +F D+T FA Sbjct: 240 YCGVGPFALHAAARDTERRVLGVETSAEAIASATHSAADAGLANARFAVGDATAFAADDD 299 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFD 358 VP++V+VNPPRRGIG L +L R ++YSSC++ ++A+D+ +P R R ++ D Sbjct: 300 GVPDVVIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSLRPVRARVLD 359 Query: 359 MFPHTAHYEVLTLLVK 374 MFP TAHYEVLTLL + Sbjct: 360 MFPQTAHYEVLTLLER 375 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 148/378 (39%), Gaps = 13/378 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP-VSGPE--QGFRNKA 59 C + +C CQ EQL K+ L E+ + + G+R KA Sbjct: 67 CPHFS--QCGGCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKA 124 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +G + L CP+ + + + + L Y Sbjct: 125 HFTFGEENNILNIGYFSKSDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSY--FTSN 182 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+++ + S G + V + + + + ++ Sbjct: 183 GTLRHLQVRVSLLTGEKQV-LVTFTQFP-KNFENVAEEILS--AGISSLALHQNTAQNKT 238 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G+ Q + E+ I P SFFQ NP A +L++ A D++ P +++ Sbjct: 239 VIGKGATLYNGNQYVQEQLMGKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFE 298 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 + GVG F L A + E EA+ A ++AA + +QF A + A + Sbjct: 299 GYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSLQQ 358 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLF 357 V+V+PPR G+ + + ++ + P I+Y SC+ T+A+DI G+ + +Q Sbjct: 359 KINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHIQAI 418 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFP T H E + LL+K+ Sbjct: 419 DMFPQTTHVECVALLIKE 436 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 26/396 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL------ADFPVEEWCAPVSGPEQ-GF 55 C + G C C + P +QL K +K L+ E+ P++ + Sbjct: 72 CPHF--GMCGGCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEY 129 Query: 56 RNKAKMVVSGS-VEKPLLGMLHRDGTPEDLC---DCPLYPASFAPVFAALKPFIARAGLT 111 RNK + + PL +H+ G+ DL DC + F + A + ++ + Sbjct: 130 RNKMEFSFGDEYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIP 189 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL------PQL 165 ++ A +G L+++L+ ++ G +++ V + T+ + L L + Sbjct: 190 YFHRATHKGYLRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRF 249 Query: 166 KVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 K + +++ E L E+ + I P SFFQTN A LY TA Sbjct: 250 KGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLLGLKFKITPFSFFQTNSLGAEVLYETA 309 Query: 226 RDWV-----RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 R+++ L K ++DL+ G G A ++ G+EI EA+ AK++AA GL Sbjct: 310 REFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGL 369 Query: 281 TRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 +F A D + + P+ ++++PPR GI + ++Y SC ++A Sbjct: 370 DNCKFIAGDVLKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVYISCKPTSLA 429 Query: 341 KDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +D++ G+R+E++ DMFP+T H E + L+ K Sbjct: 430 RDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSK 465 >UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EB67_9ACTN Length = 482 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 163/401 (40%), Gaps = 31/401 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGP--------- 51 C++ A C C + +P +QL+AK A ++ L A E A P+ G Sbjct: 85 CSIMKA--CGGCTALNRPYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGK 142 Query: 52 ---EQGFRNKAKMVVSGSVEK-PLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIA 106 +GFR+KA + E G R + +CP+ + + Sbjct: 143 YPAPRGFRHKAATPFAPGKEGAVRCGFFERGTHKIVAVPECPVEAPGARQILNGIAREAE 202 Query: 107 RAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLK 166 R + +N + G L+Y ++ +M+ V L ++ + P + Sbjct: 203 RLHIPAFNEDKHLGLLRYAVVRCGWRTDQVMVTLVTA-QRDLPHAQEFFEAVAALNPHIV 261 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 + NI + GE + + + ++ I P +F+QTNP LY A Sbjct: 262 TVAQNINGRPGNAILGEETRIVYGAECMRDQLLGCEFDISPTAFYQTNPQQTELLYQLAI 321 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ------LTGIEIASEAIACAKQSAAELGL 280 D + + D +CG G GL A L G+E IA A+++A GL Sbjct: 322 DGMDLQQGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGL 381 Query: 281 TR-LQFQALDSTQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 TR F A D+T + + +++ ++PPR G + + PR I Y SCN Sbjct: 382 TRSAWFMADDATDYILDAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRITYISCNP 441 Query: 337 QTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 T +D+ +L G+R+ ++ DMFPHT H E + +L ++ Sbjct: 442 VTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 149/378 (39%), Gaps = 25/378 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAK 60 C + A C CQ QL K +K L P+ G +RNKA+ Sbjct: 71 CEV--AKTCGGCQLQHMSYAYQLDYKYKHVKKLFEGI----EVKPILGMDNPWYYRNKAQ 124 Query: 61 MVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V K +G + +C + VF+ ++ I + Sbjct: 125 FPVKIKDGKVQMGFYRQHSNDVVTCKECKIQDHVINEVFSFIQKKIT---------LKMA 175 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 +L+++ + S S + + F+ +++ + L L + I N + + Sbjct: 176 QDLRHVFIRHS-STDEIQVVFIGKNEKNIISLS---DQLKNTFANITSIVFNYNTRNDNV 231 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + G+T L + E + + ++FFQ NP LY+ A + D Sbjct: 232 ILGDTYKVLYGNDYIIEECLGNKVKLHFKAFFQVNPKQMEVLYSQAIKAANLTGNETCID 291 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 ++ G G G+ + + G+EI EA+ A + L + D+T FA + Sbjct: 292 MYAGTGTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDHKE 351 Query: 300 -VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 +++ ++PPR+G+ + TM P I+Y SCN +T+++D++ G++ E VQ Sbjct: 352 DKIDVIFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQP 411 Query: 357 FDMFPHTAHYEVLTLLVK 374 DMF T E + L K Sbjct: 412 VDMFCQTIGLECVAKLTK 429 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 159/372 (42%), Gaps = 16/372 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 CA G+C C W + QL K ++NL ++ P S +RN+ Sbjct: 87 CAH--LGKCGGCLWGLMDYQYQLEFKKKVIENLF---GYDKDIIP-SPKTIYYRNRMDYP 140 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + V G + + +C + + FI + + ++ + G L Sbjct: 141 IYNKVSLKEPGKWY---GYIPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTGFL 197 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +Y+++ E + M+ + K +L + + + + + I+ + Sbjct: 198 RYLVIREGKFTKERMIHIITYKRKKFEELWDFIENIKDL---VTSVYWGIREDLGDVSIS 254 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 E + + L ER D+ +I P SFFQTN A L ++++ + DL+ Sbjct: 255 EKLYHYYGSKFLRERILDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYS 314 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG F L A ++ GIEI EA+ AK +A+ + +F A + A Sbjct: 315 GVGLFSLQIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK---APIIKAN 370 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPH 362 ++V+PPR G+ +Y+ + P I+Y SCN T +DI +L G++I +Q DMFP+ Sbjct: 371 KIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKLKGYKIIDMQPLDMFPN 430 Query: 363 TAHYEVLTLLVK 374 T H E + L+ K Sbjct: 431 TPHIENVILMKK 442 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 163/398 (40%), Gaps = 30/398 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA--PVSGPE--QGFRNK 58 CA + G C C+W QL K +++N L P+ E +RNK Sbjct: 75 CAHF--GYCGGCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNK 132 Query: 59 AKMVVSGSV--------------EKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALK 102 + S ++ LG D+ C L + +K Sbjct: 133 MEFSFSDMRWLTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIK 192 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL 162 F + Y+ ++ G L+ +++ S S G +ML SD+K L L + + Sbjct: 193 RFALENNIAFYSPRQQTGVLRSMMIRIS-STGEIMLVIQFFSDSKKCNL--LLEHIAQTF 249 Query: 163 PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 PQ+ + I + + + E + I +SF+QTN A +LY Sbjct: 250 PQITSLQYCINSKGNDAIYDQDLKIYKGTDCIYEEMEGLRFKINAKSFYQTNSKQAHKLY 309 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 RD+ + ++DL+ G G A ++ G+E EAIA AK +A G+ Sbjct: 310 QITRDFADLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIEN 369 Query: 283 LQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 + F D P++++ +PPR G+ K + + + +AP I+Y SCN+ T Sbjct: 370 VSFYVGDMKNVFNDTFIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSCNSAT 429 Query: 339 MAKDIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 A+D+ L +++ +VQ DMFP T H E + LL K+ Sbjct: 430 QARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 93/427 (21%), Positives = 171/427 (40%), Gaps = 65/427 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP--VSGP--EQGFRNK 58 C ++ RC CQ M P Q KT +++ L E + G +RN+ Sbjct: 71 CRVFS--RCGGCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNR 128 Query: 59 AKMVVSGS---VEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +M + KPL +R + + +CPL P SF PV AL+ + Sbjct: 129 VQMHLRREAGAPGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEID---- 184 Query: 114 NVARKRGELKYILLTES---QSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP------- 163 +++++L + + G MML V + + RKA+ L ++L Sbjct: 185 --PAGELPIRHVVLKTTTPLERAGEMMLILVFSA--WRSAWRKAVGDLAKRLMGEGATGE 240 Query: 164 ---------------------------QLKVITVNIQPVHMAIMEGET---EIYLTEQQA 193 L + VN+ + G + ++ Sbjct: 241 GATGEGATGEGATGEGATGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKER 300 Query: 194 LAERF-NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 L + + + + P SF Q NP LY ++ + + D +CG G L A Sbjct: 301 LTDYLPGGLQIEVGPASFTQVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLA 360 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV---PELVLVNPP 309 ++ GIE A+ A+++A + G+T ++F + + P++++++PP Sbjct: 361 RDCARVIGIEEVPMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSLLERACVPDVIVLDPP 420 Query: 310 RRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTAHYE 367 RRG + + ++ P I+Y SC+ ++A+D L G+++++V DMFP T H E Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVE 480 Query: 368 VLTLLVK 374 + L+ + Sbjct: 481 TVVLMSR 487 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 153/386 (39%), Gaps = 17/386 (4%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C Y G C CQ QL K +++ + V+ S + G+RNK Sbjct: 69 RCPWY--GLCGGCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNK 126 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKP----FIARAGLTPY 113 A V S +G + CP+ ++ + + R G+ Y Sbjct: 127 ASFPVR-SENGGEIGFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPFY 185 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVL--RSDTKLAQLRKALPWLHEQLPQLKVITVN 171 + R +G L++++ ++ + L V R L ++L L E N Sbjct: 186 DERRHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWN 245 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + GE + + E+ ++ L +FFQ NP A +L+ A V + Sbjct: 246 ENSSRGNRILGERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRASSIVAE 305 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + +L+ GVG + A + +E + AI ++ + GL ++ + Sbjct: 306 RGGA-VVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAE 364 Query: 292 Q-FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PG 348 T P++++V+PPR G + D ++ + ++Y SCN T+A+D +L G Sbjct: 365 DTVRTMVEAKPDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKLVSDG 424 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 + + ++ FD+FP T H E L + Sbjct: 425 WELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 13/382 (3%) Query: 7 DAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGPEQGFRNKAKMVV 63 + C C + +L K +KNL D ++ + S + +RNK + Sbjct: 75 NPDICGGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTF 134 Query: 64 SGSVEKP-LLGMLHRDGTP---EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 S + L+ LHR D +C + F + +++ + Y+ + Sbjct: 135 GDSKKGGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTRE 194 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLR--KALPWLH--EQLPQLKVITVNIQPV 175 G L+++++ ++ G +M+ V SD LR L L + + ++ + I Sbjct: 195 GLLRHLIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLSIDLVGKIVSVYHVINDS 254 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + E + ++ + E + I P SFFQ N A +LY A D Sbjct: 255 PADAVIVEKLNLIYGKEFIKEEMLGLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQSM 314 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DL+ G G A TGIEI EAI A ++A + + F D + Sbjct: 315 DVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDVLEEIE 374 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 GD ++++++PPR GI + + + IY SCN +T ++++E GF I+ Sbjct: 375 KVGDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKD 434 Query: 354 VQLFDMFPHTAHYEVLTLLVKQ 375 +++D FP + H E + LL ++ Sbjct: 435 YEIYDQFPKSRHLEAIALLTRK 456 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 159/383 (41%), Gaps = 14/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPE--QGFRN 57 +C + C CQW+ QL +KT +K L + + + G+RN Sbjct: 69 KCKHFP--ECGGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRN 126 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + + L + D+ CP+ P F + + + + + Y+ Sbjct: 127 RMEYTFQENNKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKT 186 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K+G LK++++ S S M+ V ++ L + + + + + Sbjct: 187 KKGILKHLVIRRSFSKNQTMVIIVTNTEY-LPYEEEIKQFFQQNFHP-YSLIHLMNSSDS 244 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQ--LPVK 235 ++ G L + L E F+D I P SFFQ N V +L ++ + Sbjct: 245 VVLRGP-YKTLLGEGVLNEEFDDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDA 303 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FA 294 M DL+ GVG F ++ + + +E + ++ A ++ + F S Sbjct: 304 TMLDLYSGVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYLM 363 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIE 352 + V+++PPR+G+ K LS+MA + IIY SC+ T A+D+ GF ++ Sbjct: 364 KNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLK 423 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 VQ FDMFPH+ H E + +L K Sbjct: 424 SVQPFDMFPHSYHIENVGILEKN 446 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 13/383 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGPEQGFRN 57 +C+ Y C C Q + K L N L+ E + +RN Sbjct: 37 KCSFYS--DCGGCSMQEIEPHYQFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRN 94 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 K+ V + ++ + D+ +CP+ + ++ + + + Sbjct: 95 KSTFPVYNESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHD 154 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R++G L++I + + +++ FV K L L+ + I NIQP Sbjct: 155 IRRKGGLRHISIRSGINTNEVLITFVSNFSIK-KLLFPITNKLNGSESNVVGILNNIQPK 213 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV-RQLPV 234 + G T LT + + ++F + + I SFFQ N A + R+ + + Sbjct: 214 PNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFFQVNLVEAEKAINCIRNIISNTNKI 273 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + D + G+G + A+ ++ GIEI +EA A ++A + + F+ D T++ Sbjct: 274 VRIIDAYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYL 333 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRI 351 + ++++PPR+G+ L D ++ + P I Y SCN T+A+D+ + + I Sbjct: 334 PKILLPNDFLILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILREHKYSI 393 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + FD FP T H E L L + Sbjct: 394 ISITAFDFFPQTTHLETLVYLKR 416 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 159/369 (43%), Gaps = 10/369 (2%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAKMVVSGSVEKPLL 72 + QL K A +K L + ++ G +RNK + V + Sbjct: 95 PLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTS 154 Query: 73 GMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R + D + A ++ + + +T ++ +RG ++YI++ Sbjct: 155 GFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGY 214 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 +M+ V + ++ + + + QL +LK + +N P ++ L + Sbjct: 215 YSHELMVVLVSNEEV-ISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGE 273 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 +A+ + I P SF+Q NP LY A P + D + G+G G+ Sbjct: 274 KAIYDTLLGYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIGISV 333 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQFATAQGDVPELVLVNP 308 A+ ++ G+E+ A+A A+ + ++ ++ D+ + QG P++V V+P Sbjct: 334 ASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADAPVQFKKWQEQGLKPDVVFVDP 393 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE-RVQLFDMFPHTAH 365 PRRG+ L + + M+P I+Y SCN T+++D E+ G+ I+ V D FP T+H Sbjct: 394 PRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSH 453 Query: 366 YEVLTLLVK 374 E +T+ K Sbjct: 454 VESITVFRK 462 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 172/392 (43%), Gaps = 22/392 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL----ADFPVEEWCAPVSGPEQGFRNK 58 C +++ C C + +Q K + L+ + E+ G ++ +RNK Sbjct: 74 CEKFNS--CGGCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNK 131 Query: 59 AKMVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYN 114 + + P++ LH+ + D+ +C L +F + F ++ ++ Y+ Sbjct: 132 MEFSFGNEYKDGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYH 191 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTK-LAQLRKALPWLH--EQLPQLKVITVN 171 G L+ +++ + + + + V S + + + L + LK I Sbjct: 192 RLTHIGFLRNLVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLSMGLKSIIHT 251 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV-- 229 I + + EI L ++ + ER D+ + P SFFQTN +LY + + Sbjct: 252 INDNKSDSVRADKEIILYGKRDITERLFDLSFNVSPYSFFQTNSFGVEKLYQEVINNLLF 311 Query: 230 --RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + ++DLF G G G + ++ GIE+ EA+ A ++A + G+T +F A Sbjct: 312 ITKNDEKPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIA 371 Query: 288 LDSTQFAT---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIR 344 D + + P++++++PPR G+G+ L +IIY SCN +T+A+D++ Sbjct: 372 GDVFEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKTLAEDLK 431 Query: 345 ELP--GFRIERVQLFDMFPHTAHYEVLTLLVK 374 + ++RV DMF +T H E + L+ + Sbjct: 432 IFEYNSYILKRVVCVDMFGYTPHVECIVLIQR 463 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 163/383 (42%), Gaps = 16/383 (4%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNKA 59 C + AG C C + AKT +++ A + PV G +RNK Sbjct: 73 CPV--AGPCGGCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDINRYRNKV 130 Query: 60 KMVVSGSVEK-PLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V G R DC L P + A + +AG T Y+ Sbjct: 131 QLPVGTDENGHLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGATSYDEES 190 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 G ++++ L + G +L F+L L ++ L + L + VN Sbjct: 191 HTGLVRHLFLRQGWHSGQRLLCFILNG-RALPDEQRICEELQREF-DLTTVLVNENTART 248 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++ G + + + V L + F+Q N A LYA AR + P + Sbjct: 249 NVILGPHTHTVLGPGVIEDTLAGVSLRMGVHEFYQVNTPAAEVLYAQARTYAALQPEDFL 308 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT--RLQFQALD---STQ 292 DL+CG+G GL +L G+EI +A+ AK +AA LGL+ R F+ D + Sbjct: 309 LDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRCQDAGAAAA 368 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 A+G P++++V+PPR+G + MAPR ++ SCNA T A+D R L G+R Sbjct: 369 QLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWLTEHGYR 428 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 VQ D+FP T H E + LV Sbjct: 429 AMEVQPVDLFPRTRHVECVVKLV 451 >UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=170 Tax=Gammaproteobacteria RepID=RUMB_SHESW Length = 389 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 205/378 (54%), Positives = 271/378 (71%), Gaps = 5/378 (1%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNK 58 QC ++ G+C+SC+ I P+ +QL AK+ +L+ LL F + PV+G FRNK Sbjct: 11 QCGYFNRGQCQSCRHIQVPMAQQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNK 70 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 AKMVV G+ P+LG++ G LCDC LYP+ + L F+ +AG+ PY V + Sbjct: 71 AKMVVLGAAHAPVLGIVSPSGEAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKA 130 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +GELK+ILLT SQ G +LRFVLRS + ++ +ALP L + PQ+ V++VNIQP+HMA Sbjct: 131 KGELKFILLTRSQVRGEYLLRFVLRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMA 190 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 I+EG+ EI+LTE L ERFNDVPL+IRP+SFFQTNP VA+QLY TAR+WV + K +W Sbjct: 191 ILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLW 250 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DLFCGVGGFGLHCAT D+ LTGIEI +EAI+CA+ SA +GL ++QF ALDST FA + Sbjct: 251 DLFCGVGGFGLHCATKDIALTGIEIEAEAISCAQISANLMGLEKVQFMALDSTDFAQGKN 310 Query: 299 --DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQL 356 D P+L++VNPPRRGIG+ LC LS APR I+YSSCN +T+AKD+ + G+ + +VQL Sbjct: 311 AADKPDLIIVNPPRRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHIQGYHLTKVQL 370 Query: 357 FDMFPHTAHYEVLTLLVK 374 FD+FPHT H+EVL +LVK Sbjct: 371 FDLFPHTDHFEVLAMLVK 388 >UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S9K0_LEPBA Length = 399 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 160/391 (40%), Gaps = 23/391 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKM 61 C + G C C ++ ++L K ++K L + E V P + +R+K ++ Sbjct: 11 CTHF--GTCGGCNYLDIDYTKELRKKEQNIKELFKAYRHVEIKTIVPSPSPEYYRHKIQL 68 Query: 62 VVSG----SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + LG+ +++ + D +C + V A+K + R GL PYN Sbjct: 69 PFGRRIVGNKTLLTLGLFNKEASFVLDQTECQIQDPGLTEVALAVKQWARREGLLPYNEK 128 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE----------QLPQLK 166 KRG +KY++ +S + G +++ V + L + A LH + +L Sbjct: 129 SKRGMMKYLVARKSITTGEIIVGIVTAKE-DLPHAKDASKRLHTAIQNRIGKTGKFGKLV 187 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATAR 226 I NI H + G E L + + E F + +F Q NP LY Sbjct: 188 GIIHNINTKHTTMALGREEHLLWGRPYIHEHFGKHKFRVGLSTFLQVNPIQTPSLYNLVL 247 Query: 227 DWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQ 286 D + + D + G+G A ++ GIE + A +S + ++F+ Sbjct: 248 DEIE--KDSRVIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFR 305 Query: 287 ALDSTQFAT-AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 + G + ++++PPR G+G + + + M + I+Y SC+ ++ +D Sbjct: 306 KGRVAEVLPTLYGKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLREDSIL 365 Query: 346 LPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L + + +Q DMFP T H E + + + Sbjct: 366 LTKQYFLNSLQPVDMFPRTDHVETVAVFRNK 396 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 143/380 (37%), Gaps = 35/380 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGP--EQGFR 56 C+++ GRC CQ + L K +++ L P G +R Sbjct: 86 CSVF--GRCGGCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYR 143 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NKA++ E LG DC L S + + + + Sbjct: 144 NKARLH---RGEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQDKNLFPD 200 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 L + E+ S G ML D + A + E + Sbjct: 201 ------LNALTFREN-SQGEGMLILDSLKDVRQADV------WSEMGGGTHSVW------ 241 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 I + Q+ E I P +F Q NP +LY DW K Sbjct: 242 --GINSSGEPERIAGQKEFTEDVLGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEK 299 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 +WDL+CG+G L A ++ GIE A+ A+++A + ++F + Sbjct: 300 VVWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQ 359 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 GD P +V+++PPR G + + + L + P IIY SC+A T+A+D+ L G+R+ Sbjct: 360 QIGDYPHIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVE 419 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T E + ++ Sbjct: 420 VQPVDMFPWTVSVESIIVMT 439 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 93/416 (22%), Positives = 164/416 (39%), Gaps = 45/416 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV-----EEWCAPVSGPEQ--GF 55 C ++ +C C W Q+ K + ++LA E G ++ + Sbjct: 122 CPHHE--QCGGCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRY 179 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDG---TPEDLCD-CPLYPASFAPVFAALKPFIARAG-- 109 RNK + + + L G + DL C L V AA++ + RA Sbjct: 180 RNKMEFAFASGTRGKTVVGLRPRGANDSVVDLSGGCLLQSEEADRVLAAIRETLERADGR 239 Query: 110 LTPYNVARKRGELKYILLTE--SQSDGGMMLRFVLRSDTKLAQLR----KALPWLHEQLP 163 L ++ G L+ + + + G + L + +L+ L + ++P Sbjct: 240 LEAFDRTSGEGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVP 299 Query: 164 QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYA 223 + + + + + L E N + + SFFQTN A++L Sbjct: 300 GVVSVVHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVR 359 Query: 224 TARDWVRQLPV--KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 R+ + + DLFCGVG GL A+ ++ G E+ EA+ AK++A +T Sbjct: 360 QVREACAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNIT 419 Query: 282 RLQFQALDSTQFATAQGDV-------------PELVLVNPPRRGIGKPLCDYLSTMAPRF 328 +F +D + ++G P++V+ +P R G+ L L T+ R Sbjct: 420 NAKFYRVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALIAILRTIGARR 479 Query: 329 IIYSSCNAQTMAKDIRELP---------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 I+Y SCN T A+D+ L + ++ V DMFPHT H E + +L ++ Sbjct: 480 IVYVSCNPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 160/378 (42%), Gaps = 13/378 (3%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVSGPEQG--FRNKAKMVVS 64 A C C Q + K L + + AP ++G +RN+ + + Sbjct: 87 AQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPLR 146 Query: 65 GSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + L R G+ +L CP+ + LK + +GL+ + L Sbjct: 147 RGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQGL 206 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +++ L G +++ V S +L L++ E+ +K +T+N+QP + G Sbjct: 207 RHLGLRIGHHTGEVLITVV--SSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILG 264 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP-VKHMWDLF 241 T L + E F + L + +FFQ N A ++ A W+ Q + D + Sbjct: 265 ATTTVLAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDAY 324 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDSTQFATAQGDV 300 CG+G L A + G+EI ++I A+ +A GL R +FQA D Sbjct: 325 CGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLKETLAT 384 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL----PGFRIERVQL 356 ++V+PPRRG+ + + + + P + Y SC+ T A+D++ L +R+E++Q Sbjct: 385 CSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQPEGPYRLEQLQP 444 Query: 357 FDMFPHTAHYEVLTLLVK 374 D FP T H E L L + Sbjct: 445 VDFFPQTTHLENLAFLRR 462 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 164/405 (40%), Gaps = 34/405 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA-PVSG--PEQGFRNK 58 +CA + C C+W EQL K ++ L + + P+ +RNK Sbjct: 79 KCAHFAT--CGGCRWQQMGYAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNK 136 Query: 59 AKMVVSGSVEKPLLGML---HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S + + L G +L +C L + F + + + L Y+ Sbjct: 137 MEFSFSTDLSQNKYLGLIMDSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHH 196 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL--------PQLK- 166 R G L+ + L E Q G M+ + + A + L L P+ + Sbjct: 197 YRNTGSLRTLTLREGQRTGDRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRL 256 Query: 167 VITVNIQPVHMAIMEGETEIYLTEQQALAERFN----------DVPLWIRPQSFFQTNPA 216 I + I + + E+ L + E+ + I P +FFQ N Sbjct: 257 SIFLRIHQIAKGMASQFYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTR 316 Query: 217 VASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA 276 A +LY+ A ++DL+CG G + + + G+EI EA+ A+ +AA Sbjct: 317 QAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAA 376 Query: 277 ELGLTRLQFQALDSTQFATAQGDV-----PELVLVNPPRRGIGKPLCDYLSTMAPRFIIY 331 + G + + F + T + P+LV+V+PPR G+ +L ++P+ I+Y Sbjct: 377 KNGCSNVHFLCGAVHEQLTKIIEENLFPLPDLVVVDPPRAGLDPHALQHLIKLSPKKILY 436 Query: 332 SSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 SCN T +I L G+R+E +Q D FPHT H E + +L K Sbjct: 437 VSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1I3_9ACTO Length = 396 Score = 339 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 223/377 (59%), Gaps = 6/377 (1%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C+ Y A +C SC I P +Q++ KTA +K+LL + W GFRNKAKMV Sbjct: 12 CSYYAAQQCLSCPQIEVPYEQQVAEKTARVKSLLPMIAEDAWLPTQESASVGFRNKAKMV 71 Query: 63 VSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 V+GS +LG+L D +DL +CPLY + +I G++PY+V +RGEL Sbjct: 72 VTGSAANAMLGILGSDYAGQDLTECPLYSQHMRDFLKTFQRWIRELGISPYSVKERRGEL 131 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 KYIL+TES DG ++R+VLRS +++LR + + E+ P++ V++ NI H+A+ EG Sbjct: 132 KYILVTESP-DGQFLVRWVLRSHRWVSRLRNFVSVMQEEFPEIAVVSANILAEHVALTEG 190 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 EI L L + V L + P+SFFQTN +A +Y A+ W L DLFC Sbjct: 191 PEEISLYG-DYLPFQLGRVKLQLLPRSFFQTNTFIAHAMYQQAQRWAIALKPDRAVDLFC 249 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD--- 299 GVGGF L A +TG+E+++ AIA AK+ A GL + F A D+T F+ ++G Sbjct: 250 GVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFSISEGGLQL 309 Query: 300 -VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFD 358 ++++VNPPRRGIG L ++++ R IIYSSCN ++AKD+ L ++ R ++FD Sbjct: 310 TRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKDMELLGSYKATRARVFD 369 Query: 359 MFPHTAHYEVLTLLVKQ 375 MFP T H EV+ LLVK+ Sbjct: 370 MFPGTDHAEVMVLLVKE 386 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 28/375 (7%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C ++ G+C C QL K L+ +L E S G RN+ + Sbjct: 61 RCKVF--GKCGGCILQHINYNSQLEFKKEKLRKILGR----EVEIIPSPRIFGHRNRIDL 114 Query: 62 VVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 V+ + +G + + D+ +CP++ + L+ +I ++ + + Sbjct: 115 AVTVNA----IGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDS 170 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+Y++L E + G +M+ FV + LP I +I + Sbjct: 171 GFLRYMVLREGKFTGEIMVNFVTKEGE--------LPDPTSYFDFADSIYWSINRSKSDV 222 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G+ E Y ++ + E + V I P SFFQTN A L T +V + + D Sbjct: 223 SYGDIEKY-WGKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVE---GEKVVD 278 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 ++ GVG FG++ A M++ G + + AI A ++A + F A D Sbjct: 279 MYSGVGTFGVYLAKKGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDREVDIK---- 334 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDM 359 + V+V+PPR G+ L L+ P I+Y SCN +T +I +L + IE + DM Sbjct: 335 GFDTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLNNYIIEELIALDM 394 Query: 360 FPHTAHYEVLTLLVK 374 FPHT H E++ L + Sbjct: 395 FPHTPHIELVGKLRR 409 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 30/374 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + G+C C QL K L E S G RN+ + Sbjct: 60 RCKAF--GKCGGCTLQHLNYDYQLEFKRKK----LKRILGFEVEVVPSPKIFGHRNRIDL 113 Query: 62 VVSGSVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 ++ +G R D+ +CP++ + LK FI ++ +N+ + Sbjct: 114 AITKDG----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDE 169 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G L+Y++L E + +M+ FV + I ++ + Sbjct: 170 GFLRYMVLREGKFTEEVMVNFVTKEGNLPDPTNYF---------DFDSIYWSVNRSKSDV 220 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G+ E + ++ + ER +DV I P SFFQTN A L + V + + D Sbjct: 221 SYGDIERF-WGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE---GEKILD 276 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 ++ GVG FG++ A + G + AI A+++ + +F+ + + Sbjct: 277 MYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK--- 332 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDM 359 + V+V+PPR G+ L L+ P I+Y SCN +T A+D++ L +RI+ + DM Sbjct: 333 GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-DYRIDEIVALDM 391 Query: 360 FPHTAHYEVLTLLV 373 FPHT H E++ LV Sbjct: 392 FPHTPHVELVAKLV 405 >UniRef50_D1BRN3 23S rRNA (Uracil-5-)-methyltransferase RumB n=3 Tax=Bacteria RepID=D1BRN3_XYLCX Length = 411 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 189/411 (45%), Positives = 250/411 (60%), Gaps = 38/411 (9%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVSGPEQGFRNKA 59 MQC YDAGRCRSC + P Q++ K ++ LL F + W PV+ E GFRNKA Sbjct: 1 MQCHHYDAGRCRSCTLLDVAYPVQVADKERHVRGLLEPFAPDAAWLPPVTSAEGGFRNKA 60 Query: 60 KMVVSGSVEKPLLG-------MLHRDGTP----EDLCDCPLYPASFAPVFAALKPFIARA 108 KMVV+G+VE+P++G R G DL DCPLYP + F L + RA Sbjct: 61 KMVVTGTVEEPVIGIVGALPQGYDRVGHRGPTGVDLTDCPLYPPTLQDAFGPLAELVTRA 120 Query: 109 GLTPYN-----------VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW 157 L PY+ A RGELK++++T S + G +M+R VLRS +A+LRK LPW Sbjct: 121 RLQPYDLTPSRGRVTPRDAAGRGELKHLIVTVSPA-GALMVRLVLRSQEPVARLRKHLPW 179 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERF----NDVPLWIRPQSFFQT 213 L LP L V++VN+QP H A++EGE EI LTE++ L + L +RPQSFFQT Sbjct: 180 LQTALPNLAVLSVNLQPEHKAVLEGEREIVLTERETLPMTLPVRPGGLTLHLRPQSFFQT 239 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N VA+ LY A W+ + +WDL+CGVGGF L CA P +TGIEI++EA+A A+ Sbjct: 240 NTDVAAALYRQAAQWIDDVAPASLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQV 299 Query: 274 SAAELGLTR--------LQFQALDSTQFAT--AQGDVPELVLVNPPRRGIGKPLCDYLST 323 + AEL T ++F A D+T FA DVPELV+VNPPRRGIG L D+L + Sbjct: 300 TRAELEATDGGPAAMAGVRFAAGDATAFALGCDPADVPELVIVNPPRRGIGPALADWLES 359 Query: 324 MAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVK 374 + R+++YSSCNA T+A+D+ +P R +V+L DMFP T HYEVLTLL + Sbjct: 360 SSARWVLYSSCNADTLARDLERMPSLRPAKVRLLDMFPQTRHYEVLTLLER 410 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 159/380 (41%), Gaps = 14/380 (3%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ-GFRNKAK 60 +C + G C C P +QL K + +L E + P+ +RNK + Sbjct: 72 KCKFF--GACGGCALQNLPYEKQLERKLRWVNQIL----NFEVAEILGSPKWFQYRNKME 125 Query: 61 MVVSGS-VEKPLLGMLHRDGTPEDL---CDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + PL LH+ T D+ DC + F + A F A Y Sbjct: 126 YTFGDTVKDGPLALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKKV 185 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 +G LK++++ S++ G ++ V S + + ++ + I Sbjct: 186 SHQGFLKFLVVRRSETTGXFLVNIVTSSQIAY-DFTAFVEAIKNTGFKIAGVLHTISDSP 244 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ ++ L + E + I P SFFQTN A LYA A + L K Sbjct: 245 SDAIKPDSVELLYGLNYIYEEILGLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKT 304 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 ++DL+ G G A ++ GIEI +EA+A AK++A GL +F A D Sbjct: 305 VFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDVLTQIDN 364 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 P++++V+PPR GI + + + I+Y SC A ++A+D+ G+ + + Sbjct: 365 ADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGGYHVAQS 424 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 DMF T H E + LL + Sbjct: 425 LCVDMFAQTYHVETVVLLKR 444 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 153/379 (40%), Gaps = 12/379 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF---PVEEWCAPVSGP--EQGFRN 57 C +YDA C CQ L+ K +K L + + G + +RN Sbjct: 75 CPVYDA--CGGCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDTIGMDNPKNYRN 132 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 KA + + K GM R+ + C + +F + + R + Y+ Sbjct: 133 KASLPLRLIDNKNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDPV 192 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + G + + ++ +++ + + F+L L + L + P++ I I P Sbjct: 193 LQTGIISHAIVRITENLNEVQVTFILSK--AFDGLDNLVHELVKLHPEIMSIYKVINPDV 250 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 E + ++ + E+ + P +FFQ N + A + Y + + P + Sbjct: 251 RQSYFTEDIHLIYGKEMIEEQLGGHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIKPTEI 310 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FAT 295 + D + G+ + + IEI +A+ AK S + + + + Sbjct: 311 VVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIENNFEDALDN 370 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI-RELPGFRIERV 354 + +++L +PPR G+G+ + + P+ ++Y SCN T+AKD+ L + ++ + Sbjct: 371 LKDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLLEDYDLKHI 430 Query: 355 QLFDMFPHTAHYEVLTLLV 373 DMFP+T+ E +TLL Sbjct: 431 TPIDMFPYTSLVESITLLE 449 >UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM03_CRYCD Length = 543 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 152/431 (35%), Gaps = 61/431 (14%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD-FPVEEWCAPVSGP--EQGFRNKA 59 C + C C I +P QL K + L AD P+ G GFRNK Sbjct: 109 CP--LSAECGGCSHIEEPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKI 166 Query: 60 KMVV------------SGSVEK--------------------------------PLLGML 75 + G+ Sbjct: 167 ASPFAPVRSSRTGKRVRHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLY 226 Query: 76 HRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDG 134 CP+ V AA + + + PY+ G ++++++ Sbjct: 227 AAGTHRLIRADKCPVEHPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGHESD 286 Query: 135 GMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQAL 194 +++ V + L + P++ + N+ + G E L + Sbjct: 287 EVLVTLVTNGKV-FPSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFI 345 Query: 195 AERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK---HMWDLFCGVGGFGLHC 251 + + I SF+Q N LY TA + + D +CG G GL Sbjct: 346 LDTLCGLSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVA 405 Query: 252 ATPD--MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLV 306 A+ Q+ GI+ AS +I A+Q+A G+ F D+T F A D +++++ Sbjct: 406 ASQVPNSQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDFLLHRAAASDSIDVLMM 465 Query: 307 NPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQLFDMFPHTA 364 +PPR G + +AP ++Y SCN T +D+R G+ + R++ DMFPHT Sbjct: 466 DPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVDMFPHTD 525 Query: 365 HYEVLTLLVKQ 375 H E + LL++ Sbjct: 526 HIETVALLMRN 536 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 151/376 (40%), Gaps = 14/376 (3%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA------PVSGPEQGFRNKAKMVVSG 65 + P+QL K + L + ++ + +RNKA+ + Sbjct: 84 GGLELAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPTPNAWNYRNKAQYQIEF 143 Query: 66 SVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 + K LG+ + DL D P V +K I + + + R +K Sbjct: 144 NKGKSKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKT 203 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGET 184 I + +S + G + + + K L +LP + + N + G Sbjct: 204 IAVRQSNATGEIQVTLITIGKKIKDL--KLLASHIMKLPNVVSVFQNETQWQNPQVWGNK 261 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 I L + + E + P++FFQ NP + LY+ A ++ P + + D + GV Sbjct: 262 TIKLFGKSHITEEILGKKFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGV 321 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---QGDVP 301 G G+ + Q+ GIE EA+ A+++ + ++ + + QG Sbjct: 322 GTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKLLPELKNQGVPI 381 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMF 360 ++V+PPR G+ K L L + P +Y SCN T+AKD+ L + + +Q DM Sbjct: 382 NALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYDVRVIQPVDMM 441 Query: 361 PHTAHYEVLTLLV-KQ 375 P T +E +T LV ++ Sbjct: 442 PQTPRWEGVTKLVLRK 457 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 159/388 (40%), Gaps = 25/388 (6%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSG-PEQGFRNKAKMVVSGS-V 67 C + EQL KT +K L ++ PV +RNK + + Sbjct: 86 GGCNYQYYTYDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVKPDKYRNKMEFSFGNAAK 145 Query: 68 EKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKY 124 P++ LH+ + D+ + L +F ++ F + G Y+ G + Sbjct: 146 GGPIILGLHKQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRN 205 Query: 125 ILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLP--------QLKVITVNIQPVH 176 +++ +++ +++ V + + K E L ++ I Sbjct: 206 LVIRKAEFTKQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNF 265 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV-- 234 ++ E+E L ++ L E + I P SFFQTN +LY ++ ++ Sbjct: 266 SDMVISESETILYGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIK 325 Query: 235 ---KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 ++DLF G G G + Q+ GIE+ EA+ A ++A + F A D Sbjct: 326 IDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDVF 385 Query: 292 ---QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP- 347 G P++++++PPR G+G+ L + IIY SCN +T+ D+ + Sbjct: 386 AKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMTDLIKFGE 445 Query: 348 -GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+ R + DMFP T H EV+ LL K Sbjct: 446 FGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLW5_9ACTN Length = 452 Score = 333 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 94/433 (21%), Positives = 162/433 (37%), Gaps = 66/433 (15%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGP--EQGFRNK 58 C + A C C+W+ P P QL K + LL + + G + FR+K Sbjct: 8 CPI--ARSCGGCEWLSVPYPIQLKRKQQQVVELLGPLGEKFGVSVEDIRGMREPRAFRHK 65 Query: 59 AKMVVSGSVEKPLLGMLHRDGTP--EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A + + + GT C + + + +R + Y+ Sbjct: 66 AATPFAPGARGRVRSGFYAAGTHRIVTCEACLVEDPRARDILNDVARLASRFNVRAYDED 125 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R RG L++ ++ + M+L V L R+ + L P++ I +N+ Sbjct: 126 RGRGILRHAVIRTGYATDEMLLTLVANGQR-LPHEREFISTLQRLHPEITGIVLNVNQRR 184 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARD----WVRQL 232 + G L + ++ + I P SF+QTNP LY A + + Sbjct: 185 TNAILGRETRVLAGAATMHDKLLNCTFEIGPTSFYQTNPEQTEVLYRLALEGVFGVCEKS 244 Query: 233 PVK-----------------------------------------HMWDLFCGVGGFGLHC 251 + + D +CG G G+ Sbjct: 245 NDERLSSGNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICA 304 Query: 252 ATPDM------QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPE 302 A +L G++ IA AK++A ++ +F D+T+F +G + Sbjct: 305 AKEAGSRGIPVELIGVDQVENNIAMAKRNARANAVS-ARFVCDDATRFIAQEAKRGAPYD 363 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMF 360 +V+++PPR G + +AP+ ++Y SCN T A+D+ L G++ ER+ DMF Sbjct: 364 VVVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASGYKPERIVPVDMF 423 Query: 361 PHTAHYEVLTLLV 373 PHT H E + LL Sbjct: 424 PHTKHVETVVLLS 436 >UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU9_9FIRM Length = 441 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 15/381 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS-GPEQGFRNKAKM 61 C D C C + +++ K L NLL + + S G + +RNK + Sbjct: 66 CPHTD---CGGCTYDGFSYDKEIEYKEKLLNNLLHEELNLDNIKIYSAGIFENYRNKMEF 122 Query: 62 VVSGSVEK-PLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + PL LH+ ++ + C + F + + F +N Sbjct: 123 TFGDTYKGSPLALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFK--DKAFFNRRS 180 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL-PQLKVITVNIQPVH 176 G L+++ + + G +++ V D L L +L Q+K I I Sbjct: 181 HEGTLRHLAIRRTNY-GEILVNIVTTKDNDLDLKSYVDELLSLKLEAQIKGICHTINDSQ 239 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + E L + + E + I SFFQTN A+ LY A D + L K Sbjct: 240 GDAIIKEDFHILYGRDYVIEELLGLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKK 299 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG G A + G+EI EA+ A+++A ++ + F A D + Sbjct: 300 VLDLYCGTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKVVND 359 Query: 297 QGDVPELVLVNPPRRGI-GKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 ++++++PPR GI D + +P +Y SCN + KD++ G+++++ Sbjct: 360 LDIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIERGYKLKK 419 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 + D FP T + E+++LL K Sbjct: 420 IVGLDQFPRTVNLELISLLEK 440 >UniRef50_C4GBP4 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBP4_9FIRM Length = 532 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 156/448 (34%), Gaps = 78/448 (17%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV-----SGPEQGFRN 57 C + C C + P +Q K +++L+ E S Q +RN Sbjct: 84 CPHF--AECGGCSYQNLPYEDQRKLKEDQIRHLMQPLFGEGVDRIFEGVTASPAHQEYRN 141 Query: 58 KAKMVVSG--SVEKPLLGMLHRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 K + + LGM R + C + + F L Y Sbjct: 142 KMEFSFGDQTKGGQLALGMHKRGSFYDIVTVDQCRIISQDMRDLLRLTLDFFTERRLGFY 201 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDT--------KLAQLRKALPWLHEQL--- 162 + G L+++L+ +Q G +M+ V +D + +K L + L Sbjct: 202 HKICHEGYLRHLLVRRAQRTGMLMVDLVTSTDRVDREGRPFTEEEEKKLLGDWKQLLLSH 261 Query: 163 ---PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVAS 219 +L I +E + L + L E + I P SFFQTN A Sbjct: 262 NWSDELAGILHTQNDSPADAIEDQGTELLYGRDFLTEEILGLRFDITPFSFFQTNSPGAE 321 Query: 220 QLYATARDWVRQL----------------------------------------------- 232 LY T R+++ Sbjct: 322 VLYETVREFIGGDEKGRENIDLSTVLSLPEGADKEQEQSHSDGEAKKRDHFDGQEKNRNN 381 Query: 233 ----PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 K ++DL+ G G A + G+EI EA+A A+ +A + GL +F A Sbjct: 382 LDCIKGKTVFDLYSGTGTIAQILAPAAGHVIGVEIVEEAVAAARANAKKNGLDNCEFIAG 441 Query: 289 DSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 D + D P+ ++++PPR GI D + +IY SC ++ +D+ L Sbjct: 442 DVLKVIDDIEDKPDFIVLDPPRDGIHPKALDKIIDYGVESMIYISCKPTSLVRDLEILMA 501 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + R++ DMFP T H E + L+ + Sbjct: 502 RGYEVRRMRGVDMFPATGHVECIALIQR 529 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 20/382 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPE-QGFRN 57 QC + GRC C ++ QL K ++ L + ++ ++ P G+RN Sbjct: 72 QCPV--QGRCSGCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRN 129 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + K+ + + + G+ + C ++ + + + L Y+ Sbjct: 130 QCKLPIREERGRLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQFRLKAYDPK 189 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP-V 175 + G L+ ++L +G V D+ + L + + I NI P Sbjct: 190 KGTG-LRTLVLR--GFEGQYQCVLVSGEDSLPKGFIEKLKAIE----GMTCIMQNINPDK 242 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + L + L +F DV L + SFFQ N A Q+ A + P Sbjct: 243 RTRQLFSNRWSLLAGEDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIE--PCD 300 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + + + GVGG L + GIE EA+ AK++A ++F D+ + Sbjct: 301 TLVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMK 360 Query: 296 AQGDV--PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIE 352 + V+V+PPR G+ + + L P+ I+Y SCN T+ K+++EL + ++ Sbjct: 361 KIIRRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVK 420 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 V FDMFP+T H E + LL K Sbjct: 421 TVIPFDMFPNTPHVETVVLLSK 442 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 165/388 (42%), Gaps = 21/388 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGP-EQGFRNK 58 C A +C C W Q+ K +++ L + P E +RNK Sbjct: 79 CIH--AIQCGGCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYRNK 136 Query: 59 AKMVVSGSV--EKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + S LLG+ D + DC L + + ++ ++ + Sbjct: 137 MVFAFAPSPCLSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLEKK 196 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-------LKVI 168 +++++ E+ G +++ ++ L + + L ++L Q +K I Sbjct: 197 ILTLKYFRFLIIRETI-TGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKGI 255 Query: 169 TVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW 228 ++ + I E I+ ++ L E+ D+ L +FFQ N LY+ Sbjct: 256 ILSRRTQVSDIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILSM 315 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + + +WDL+ GVG L A +++ G+E + +I A ++ LG T F Sbjct: 316 AQLTGKELVWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQD 375 Query: 289 DSTQFATAQGDV---PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 D+ F +Q P++V+V+PPR G+ K + + L +APR IY SCN T A+DI Sbjct: 376 DAFSFIRSQIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIAM 435 Query: 346 LPG-FRIERVQLFDMFPHTAHYEVLTLL 372 L F I++ Q D+FPHT H E ++ L Sbjct: 436 LSPHFVIQQTQPVDLFPHTPHVETVSYL 463 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 149/379 (39%), Gaps = 34/379 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE-EWCAPVSGPE--QGFRNKA 59 C Y C C + E+L K +K+ + PV +RNK Sbjct: 65 CPHYY--ECGGCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKV 122 Query: 60 KMVVSGSVEK-PLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + ++ P+LG + C L + A +K + A Sbjct: 123 TWHMAATGKQEPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALL-----PLIQPAT 177 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 I L ES D ML + ++ L + + + Sbjct: 178 GS----EITLRESSLDHSTMLIWKGLQGWPAPEIWAELSAISDSV--------------- 218 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++E T Y++ Q L ++ V + P +FFQ N A ++ V K + Sbjct: 219 VVIEKNTCHYISGPQRLLDKLGQVKFALSPGAFFQVNHCQAEEMIRLILSLVD-FSGKTV 277 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ 297 D FCGVG L+ A ++ G+E AI A+ +A E G+ ++F + Sbjct: 278 LDAFCGVGSIALNLARQAERVIGVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVARI 337 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQ 355 + ++++++PPR G K L S ++PR I+Y SCN T+A+D+ G+R +Q Sbjct: 338 DEPIDVIVLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQ 397 Query: 356 LFDMFPHTAHYEVLTLLVK 374 DMFP T H E + L+ + Sbjct: 398 PIDMFPRTYHVETVVLMSR 416 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 15/371 (4%) Query: 16 WIMQPIPEQLSAKTADLKNLLADF-----PVEEWCAPVSGP-EQGFRNKAKMVVSGSVEK 69 +QL K L + + P + ++ P +G+RNK + ++ + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144 Query: 70 PLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 + G+ ++ + + + K + + + + G +KYI Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYG-VKYIATR 203 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 S +G + + FV +D K+ + K + L + +K I +NI ++ G + L Sbjct: 204 TSFYNGDVQVTFVANTD-KIKNMDKVVNELKRE-RIVKSIILNITNDKDHLVMGTESVTL 261 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 + E+ D + +SFFQ NP +LY ++ + D +CGVG G Sbjct: 262 YGSDYIVEKIGDTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTIG 321 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVL 305 + + ++ G++I AI A + L + A D+ + +G ++ + Sbjct: 322 QYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWKKKGINFDVAI 381 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFPHTA 364 V+PPR G+G L L + + I+Y SCN T+A+D++ L ++I R+Q DMFP TA Sbjct: 382 VDPPRVGLGP-LAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIRRIQPVDMFPGTA 440 Query: 365 HYEVLTLLVKQ 375 E + L+++ Sbjct: 441 AVEAVVELIRK 451 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 154/380 (40%), Gaps = 34/380 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC--APVSGPEQGFRNKAK 60 C + C C + P +Q+ K LK+ L + +R K + Sbjct: 66 CKYFTL--CGGCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQ 123 Query: 61 MVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 + G ++ D+ C L F + LK F+ + L+P Sbjct: 124 FKF----DGKNFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPSQ----- 174 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMA 178 ++ S S +++FV ++++A + + +++ + +K I Sbjct: 175 ------VIVFSNSKNQKLIKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFY------- 221 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + + L + + E ++ + SFFQ N L V+ K Sbjct: 222 --DKKKRQLLLGEYVIFETVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAV 279 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FATAQ 297 D +CGVG F + A ++ GIE EA+ AK + L L+F + + A+ Sbjct: 280 DFYCGVGTFSVPLANYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKYAK 339 Query: 298 GDVPELVLVNPPRRGIGKPLCDYLSTM-APRFIIYSSCNAQTMAKDIRELP--GFRIERV 354 PE+V+ +PPR G+ K + +S + + + IIY SCN T+A+D+++ GF +V Sbjct: 340 DFKPEVVVFDPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKV 399 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 + DMFP T H E + +L K Sbjct: 400 SMVDMFPQTHHIESVVVLEK 419 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 129/377 (34%), Gaps = 62/377 (16%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGP-EQGFRNK 58 C + G C CQW QL K A ++ L V P G+RN Sbjct: 80 CPYF--GICGGCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNH 137 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 A+ V G + + C + + V L+ + Sbjct: 138 ARFSVDGKGNLGYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQE--------------R 183 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 +++ + G +++ P + I Sbjct: 184 AHVKHQLMVRYGVNTGELLV-----------------------HPDVSAI---------- 210 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + Q A E I SFFQTN AVA +L + + + + Sbjct: 211 -----DPTIPSGQPAYHESLLGHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVV 265 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D + GVG F A ++ GIE + A++ A+ + +++ Sbjct: 266 DAYAGVGTFAAFLAPRVARVIGIEESPSAVSDAQVNLD--PFDNVEYVQAKVEHVLGKLA 323 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQL 356 P++V+++PPR G + + P +IY SC+ T+A+D+R+L G+R+ V Sbjct: 324 VRPDVVILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTP 383 Query: 357 FDMFPHTAHYEVLTLLV 373 DMFP T H E + L Sbjct: 384 LDMFPQTYHIESVATLE 400 >UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D8B Length = 401 Score = 321 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 156/388 (40%), Positives = 220/388 (56%), Gaps = 15/388 (3%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 + C ++AG CRSC +I P +Q++ K A +LA + W G ++ FRN+AK Sbjct: 16 LDCHYFNAGLCRSCTFIETPHRDQVADKEAWCVEVLAGHSPDAWLPAAVGLDRDFRNRAK 75 Query: 61 MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 + V GS LG+L +D DL +C + V + F+ GL PY+V +RG Sbjct: 76 LAVGGSAGSVTLGILDQDFHGVDLRECGIQAPQIRAVIPTIAHFLNGTGLAPYDVKARRG 135 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 ELK++ +T + S G +M RFV+RS L LR L LP VI+VN+ P H A++ Sbjct: 136 ELKFVHITAAPS-GDLMTRFVVRSQHGLDVLRSRGQELRALLPTATVISVNLLPEHKAVL 194 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL 240 EG E L +L + V L +RPQSFFQTN VA LY WV ++ +WDL Sbjct: 195 EGSREEMLLG-DSLRMNLDRVDLHLRPQSFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDL 253 Query: 241 FCGVGGFGLHCATPDM-----QLTGIEIASEAIACAKQSAAELGLTR-----LQFQALDS 290 +CGVGGF L+CA ++TG+E++ +AI AK SA ELG ++F A D+ Sbjct: 254 YCGVGGFALYCAGTTGQQSPRRVTGVELSEQAIESAKISAVELGFDSQSGATVEFIADDA 313 Query: 291 TQFATA---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP 347 T+FA A G+ P+ V+VNPPRRGIG L L I+YSSCN T+AKD+ ++P Sbjct: 314 TEFAEANLASGERPDCVIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMP 373 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + +ER ++FDMFPHT H EV +L ++ Sbjct: 374 SYTVERARVFDMFPHTKHLEVAVVLQRR 401 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 76/374 (20%), Positives = 146/374 (39%), Gaps = 11/374 (2%) Query: 8 AGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAP--VSGPEQGFRNKAKMVVS 64 A C C Q++ K + L E P ++ +RNKA + + Sbjct: 76 AKDCGGCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLE 135 Query: 65 GSVEKPLLGMLHR--DGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGEL 122 + L +R ++ +CPL + +K + + + Sbjct: 136 QTSSGWLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPI--DIHSLNGI 193 Query: 123 KYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEG 182 +++ L +++ V D + K ++ PQ+ + +N+QP + G Sbjct: 194 RHLCLKVGILTNEIIITLVSSHDRM-PGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIG 252 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 + + + L ERF ++ L I +FFQ N A + + + D + Sbjct: 253 SSTKTIAGRPWLIERFCNLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYS 312 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE 302 GVG L A + G+E+ ++ A+ +A +T +F+ +D + + Sbjct: 313 GVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEALALHLPSSD 372 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDM 359 ++V+PPR+G+ + + +Y SCN T+A+D+R L ++ +Q D Sbjct: 373 ALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGNIKVTFIQPIDF 432 Query: 360 FPHTAHYEVLTLLV 373 FP T H E LT+L Sbjct: 433 FPKTTHVECLTILE 446 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 164/384 (42%), Gaps = 24/384 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVSGP--EQGFRNK 58 +C ++ RC CQ Q + K A ++ + +E P+ +RN+ Sbjct: 78 RCPVF--ARCGGCQVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQ 135 Query: 59 AKMVVSGSV--EKPLLGMLHRDGTPEDLCD-CPLYPASFAPVFAALKPFIARAGLTPYNV 115 +M V + ++ +G + + C L P + V + F+ G T Sbjct: 136 VQMPVRWNATAQRVEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTA--- 192 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + ++++ +S + G M + F L +D +++++ H PQ+ + V +QP Sbjct: 193 ----QFVHHVIVRQSHATGDMAVVFALATDD--PSVKRSVGRFHA--PQVVQVAVTVQPR 244 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + G+ + L E + + P+SF Q +A ++Y V Sbjct: 245 AHGPVWGDGAEVMKGGSHLEENLCGLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETD 304 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + D +CG+G L A+ + G+E +AIA A+ +A + +F ++ Sbjct: 305 VVIDAYCGIGAMTLLLASHAARAVGVEEVEDAIADARANAKLNRVRNAEFVVDRVERWLP 364 Query: 296 AQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFR 350 G+ ++++ +PPR+G+ + + + ++Y SCN T+ +D+R L GF Sbjct: 365 RFVEAGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFY 424 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + +Q FDMFP T+H E + + + Sbjct: 425 VTDIQPFDMFPQTSHVECVVTMRR 448 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 172/381 (45%), Gaps = 34/381 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNKA 59 C ++ +C C ++ + L K + N L + + V+ E +RN Sbjct: 70 CKYFN--KCGGCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNM 127 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V + +G+ ++ + C + + L F + Sbjct: 128 QFQV----KNGKIGLYMKNSKEIVPIEHCLMQSTNANKTLKILTKF------------KN 171 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 ++K + + + D + ++ S K+ +L L L + + I NI A Sbjct: 172 LEKIKTLGIRTNYKD---QVMLIISSKEKINKLNLILGDLID--ANVVSIYENINNRKNA 226 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 G+ L Q+ L E+ N + + P SFFQ N A LY A ++++ + + Sbjct: 227 H-YGDEFNLLYGQEYLEEKINKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIA 285 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD----STQFA 294 DL+ GVG L A+ Q G+EI EAI A+ +A + L + +F + Sbjct: 286 DLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKL-QARFICGKSEEILEKIQ 344 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIER 353 T + + +LV+PPR+G+ K L DYL+ + I+Y SCN T+A+D++ L +++E+ Sbjct: 345 TDEKIKMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEK 404 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 V++FD+FP+T+H EV+TLL K Sbjct: 405 VEIFDLFPYTSHVEVITLLSK 425 >UniRef50_A9NFQ7 RNA methyltransferase, TrmA family, putative n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFQ7_ACHLI Length = 380 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 76/366 (20%), Positives = 146/366 (39%), Gaps = 12/366 (3%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP-EQGFRNKAKMVVSGSVEK---- 69 + P EQL K +K+L E+ V P +G+R+KA + + Sbjct: 18 AFEQMPYKEQLQVKEKYIKSLFNR----EFLPIVPNPVPRGYRHKAVLSATNVNVNNNQQ 73 Query: 70 PLLGMLHRDGTPEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLT 128 LG+ T L+ VF ++ + + Y ++G +K++++ Sbjct: 74 IRLGLFIEGTTKIKPKLGHFLHDKEIDLVFETVEKLLIKYKHKAYAKNYRQGIIKHVMIR 133 Query: 129 ESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYL 188 +S G +M+ F + + +K + L P +K + NI + E + L Sbjct: 134 KSFKTGDLMVIFSTQLNN-FPNHKKIVNELIALHPNVKTVIQNIHKKDSKFVLLEEQRIL 192 Query: 189 TEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248 + + + D+ I +F+Q NP LY ++ + D + G+G Sbjct: 193 YGKGFIIDSIGDIDFKISANAFYQINPMQMFNLYDKVFEFAGIEKTDVVIDAYSGIGTIT 252 Query: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNP 308 L + ++ G+EI + A + +T +F D D + ++++P Sbjct: 253 LLASKYAKKVYGLEINPASHKDAIDNKRMNQITNAEFILGDVEHTLENFTDKVDTLIMDP 312 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQLFDMFPHTAHYE 367 R G + + P+ I+Y SCN T +D ++L + + ++ FDMF +T H E Sbjct: 313 ARDGASLKFIQTVLKLKPKKIVYVSCNPDTQERDYKQLRNFYNLTKILPFDMFSYTPHVE 372 Query: 368 VLTLLV 373 + LL Sbjct: 373 NIVLLE 378 >UniRef50_C7NHZ3 SAM-dependent methyltransferase, tRNA(Uracil-5)-methyltransferase n=3 Tax=Actinomycetales RepID=C7NHZ3_KYTSD Length = 413 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 162/389 (41%), Positives = 223/389 (57%), Gaps = 17/389 (4%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLA-DFPVEEWCAPVSGPEQGFRNKA 59 + C + AGRC SC + P QL K A +++LLA P W AP++ +GFR KA Sbjct: 18 VHCHHFSAGRCGSCTLMGTPYRVQLQRKDAVVRDLLAAQVPATAWEAPLASVPEGFRTKA 77 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 K VVSGS P LG+L G DL DC L+ A V L F+ RA L PY++AR+R Sbjct: 78 KFVVSGSAAAPTLGILDEAGRGVDLRDCGLHVPELAAVADRLARFVTRAALPPYDLARRR 137 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 GELK+++LT + S G +MLRFVLR++ L ++R+ LP L LPQL+V++ N+ P H A Sbjct: 138 GELKHLVLTAAPS-GDLMLRFVLRTEGPLPRIREHLPGLLADLPQLRVVSANLHPEHKAT 196 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + GE EI LTEQ L V L+ P +F QTN VA+ LY A W+ + + D Sbjct: 197 LSGEVEIALTEQTLLPLELPGVTLFAGPGAFVQTNTTVAAALYQQATAWLVDAGARRVAD 256 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAEL----GLTRLQFQALDSTQ--- 292 L+CGVGGF LH A + G+EIA++A+ A+ AA L G +F D++ Sbjct: 257 LYCGVGGFALHAAAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVADASDPAA 316 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAP--------RFIIYSSCNAQTMAKDIR 344 A G + ++VNPPRRG+G L L +P R ++YSSCN T+A D+ Sbjct: 317 VLAAAGTDRDAMVVNPPRRGLGPDLPAMLDARSPAADPASALRTLVYSSCNPATLATDLA 376 Query: 345 ELPGFRIERVQLFDMFPHTAHYEVLTLLV 373 LP +++ +LFDMFP+T H EV+ LL Sbjct: 377 GLPHWQVRSARLFDMFPNTDHAEVVVLLE 405 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 155/380 (40%), Gaps = 19/380 (5%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-WCAPVS--GPEQGFRNKA 59 C ++ C C + P Q K +LK L + P+ +RN Sbjct: 65 CPIWK--ECGGCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSC 122 Query: 60 KMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 K+ + GM RD + + C ++ A+ + L Y+ +K Sbjct: 123 KLPFGEEYGELYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYDDKKK 182 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G + +++ E D + + FV + + + L + I +++ Sbjct: 183 TGY-RTLVMKE--FDSKIQIIFVTGKENLSEEFIHDVTQLE----GVVSIWQSVKTETKR 235 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + G+ ++ ++ + + D+ L + P+SFFQ N + LY +DW+ K Sbjct: 236 EVFGD-MRFIWGEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMP--RSKTTV 292 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 + + G+G L ++ G+E +A+ A ++A + F D+ Sbjct: 293 EAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLV 352 Query: 299 DVPEL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIERVQ 355 ++ ++V+PPR G+ + + + + +IY SCN T+AKD+ L +RI ++Q Sbjct: 353 QEKDVDTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQ 412 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 DMF T H E +TLLV+ Sbjct: 413 PVDMFSQTPHVESVTLLVRN 432 >UniRef50_D0YVB6 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Mobiluncus mulieris RepID=D0YVB6_9ACTO Length = 450 Score = 311 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 142/435 (32%), Positives = 216/435 (49%), Gaps = 61/435 (14%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQGFRNK 58 ++CA + G CRSC+ + Q +Q+ K + +L F + W +P P+ GFRNK Sbjct: 17 VKCAYFSRGSCRSCELMGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNK 76 Query: 59 AKMVVSGSVEKPLLGM--LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 AKMV+SGS + LG+ R DL CPLYP S FA ++ ++ R G PY + Sbjct: 77 AKMVISGSKKTITLGLPPTPRHPHGVDLEKCPLYPESIRATFAPIRQWLLRLGARPYQID 136 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 RGEL+++L++ + + G +M+R VLRS L ++ P L +LP L+V +VNIQP H Sbjct: 137 AHRGELRHVLVSANPA-GELMVRLVLRSKAALKRVENTWPDLARELPGLRVFSVNIQPEH 195 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 A+++G EI L+ Q+ L L++ P +FFQTN A A LY A +W +L Sbjct: 196 TALIDGPEEIVLSPQRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGL 255 Query: 237 MWDLFCGVGGFGLHCATPDM----------------QLTGIEIASEAIACAKQSAAE--- 277 +WDL+CGVGGFG A Q+ G+E+A AI AK +A Sbjct: 256 VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRA 315 Query: 278 --------LGLTRLQ---------------------------FQALDSTQFATAQGD--V 300 T++ F D+ ++ Q Sbjct: 316 TPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITADAGKWIKNQKKLVT 375 Query: 301 PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF 360 P+L++VNPPRRG+G L ++ +IYSSC ++ ++ + +R+ ++L DMF Sbjct: 376 PDLLVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKSYRVTELKLVDMF 435 Query: 361 PHTAHYEVLTLLVKQ 375 PHT H E + LL ++ Sbjct: 436 PHTRHVETIVLLSRK 450 >UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK1_ACHLI Length = 460 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 12/373 (3%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGP--EQGFRNKAKMVVS 64 C + + L K L N L + ++ G G+RNK + V Sbjct: 82 CGAYSMQHVTYEKSLQIKRDILINALNRYVDKKIVYSKIKQTIGMNEPLGYRNKVSLPVR 141 Query: 65 GSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELK 123 K G+ + G + D P++ + ++ + + Y K G +K Sbjct: 142 KLEGKNKFGLYAKGGNEFIPVNDTPVHQPRINEIIQIVETLMDQHKFHAYIQKDKSGYMK 201 Query: 124 YILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV-HMAIMEG 182 +++ S + G + + F+L K + K L Q P + + I Sbjct: 202 SMVIRRSYTTGEVQVSFLLMK--KFEGIAKFTEALVAQCPDIVSVFAFYTDKYKEQIFFT 259 Query: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFC 242 L + + E+ N + P++FFQ N +A + Y R+ P + D + Sbjct: 260 NNYENLFGKATINEKINHQTFSLYPEAFFQLNTVMADKFYNKMRELANLQPTDVVIDAYA 319 Query: 243 GVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA-QGDVP 301 G + A ++ IEI ++ A S + + D + + D Sbjct: 320 GSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQSDFKKALKNLEVDTI 379 Query: 302 ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE-LPGFRIERVQLFDMF 360 + + +PPR G+G + P+ +IY SCN T+AKD+ + L + ++ + DMF Sbjct: 380 DAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPSTLAKDLEDLLKTYELKSLIPMDMF 439 Query: 361 PHTAHYEVLTLLV 373 P+T E ++LL Sbjct: 440 PYTPLVESVSLLE 452 >UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS Length = 631 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 80/417 (19%), Positives = 149/417 (35%), Gaps = 55/417 (13%) Query: 14 CQWIMQPIPEQLSAKTADLKNLLADFPVE---------------EWCAPVSGPE-QGFRN 57 C +QL K+ ++ LL + E ++ + P G+RN Sbjct: 158 CPLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRN 217 Query: 58 KAKMVVSGSVEKPLLGMLHRDG------TPEDLCDCPLYPASFAPVFAALKPFIARAGLT 111 K + V + E ++ ++ D P P + + + ++ Sbjct: 218 KNEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQ 277 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRF-VLRSDTKLAQLRKALPWLH--------EQL 162 P+N G + +++ S + G +ML + S+ + ++ L + Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQDD 337 Query: 163 PQLKVITVNIQPVHMAIM--EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQ 220 K ++ Q V ++ + + + I P +FFQ N A+ Sbjct: 338 ATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTIQGLQFRISPLAFFQINTEGANV 397 Query: 221 LYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 LY A D V M D+ CG G L A ++ G+EI +AI A+ +A G+ Sbjct: 398 LYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGI 457 Query: 281 TRLQFQALDSTQFATAQGDVPE-----------LVLVNPPRRGIGKPLCDYLS-TMAPRF 328 +F ++ F + + +V+PPR G+ + A Sbjct: 458 KNCKFFTGNADDFIKSMVREAMYEQEPGKPVDLIAVVDPPRAGLHNRSIAAIRSASAINR 517 Query: 329 IIYSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 ++Y SCN + ++ EL F + DMFPHT H E++ L ++ Sbjct: 518 LVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 574 >UniRef50_C2EN78 TrmA family tRNA (Uracil-5-)-methyltransferase n=1 Tax=Lactobacillus ultunensis DSM 16047 RepID=C2EN78_9LACO Length = 465 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 141/367 (38%), Gaps = 10/367 (2%) Query: 16 WIMQPIPEQLSAKTADLKNLLADFPVEEW-CAPVSGPE--QGFRNKAKMVVSGSVEKPLL 72 +QL K +K LL + +E + +G+RN+ + V + + Sbjct: 97 LANLKYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPLTKGYRNEIVLPVREVKGQLEV 156 Query: 73 GMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G R G L + + A++ + + + Y+ G ++ I + SQ Sbjct: 157 GFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKVPAYDPNTNSGFIRDIDVRRSQ 216 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 GM++ + + L + + + E+L + + +N P + G++ I L Sbjct: 217 GKKGMIVTLITH-ENDRVDLPEIVGLITEKLHNVNGVVLNYNPHKTDEIFGKSNIPLWGN 275 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 + + + + I P+S+FQ N + + A + + D FCGVG GL Sbjct: 276 DYVEDELDGIQFKISPKSYFQANGSQLKPITDLALSLLDLKDTDKLIDAFCGVGTVGLLA 335 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF---ATAQGDVPELVLVNP 308 A + GI+ +I A+++A + + Q + +++ P Sbjct: 336 AKKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVEQVLSRFAKNDEKGTVIMATP 395 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHY 366 P +G+ D + M PR I+Y S N TM +D+ G+ + D P T Sbjct: 396 PAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDLACFKKKGYTCTEITPIDTAPQTPEV 455 Query: 367 EVLTLLV 373 + +LV Sbjct: 456 KCFGVLV 462 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 73/372 (19%), Positives = 134/372 (36%), Gaps = 23/372 (6%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPVSGP--EQGFRNKAKMVVSGS 66 W +QL K + + L E + P G+RNK ++ + Sbjct: 80 PWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRN 139 Query: 67 VEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 K L+GM +G + DCPL S A+ +G Y +++ I Sbjct: 140 GNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAV------SGALSYLSGSHELDVERI 193 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETE 185 + S+ + + R + + + + + Sbjct: 194 GIRVSRRTKELEVALWTAPSGFP---RAQVARVLSDAVKATSVVRVMTKGPSKARRVVGV 250 Query: 186 IYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVG 245 L+ + +E + + + SFFQ N A +L + P DL+CG G Sbjct: 251 ERLSGSGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCGAG 310 Query: 246 GFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVL 305 F L A ++ +E A+ +++ L + D+ + ++++ Sbjct: 311 TFTLPLAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDAGREFPDTD--ADVII 368 Query: 306 VNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDMFPH 362 V+PPR G+ + LS R I Y SC+ T+A+D++ ++ V D+FP Sbjct: 369 VDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVDLFPQ 428 Query: 363 TAHYEVLTLLVK 374 T H E + LL + Sbjct: 429 TFHVENVCLLKR 440 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 25/385 (6%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEW----CAPVSGPEQ--GFRNKAKMVVSGS 66 C + M +QL K L+ +L + + + G ++ +RNK Sbjct: 87 GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146 Query: 67 VEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARA-----GLTPYNVARKRG 120 G R + L + + +N G Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206 Query: 121 ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM 180 LK I++ ++ D +M+ V+ +++ QL K L ++++ +K I ++++ ++ Sbjct: 207 FLKQIMIRNNEKD-EVMIVVVVNKNSQYNQLSKVLEEMYDENDCIKSIYISVKTEQNNVI 265 Query: 181 EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV------ 234 G ++L Q L E + I P SFFQ N A +LY A +++ + Sbjct: 266 LG-KNVHLFGSQYLEEEMEGLKFKIYPNSFFQINKKQALKLYDAAINFLNEENKNIDKIY 324 Query: 235 -KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 K + D F G G + + ++ GIE + AK ++ E + ++F + Sbjct: 325 EKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGKVEKE 384 Query: 294 ATAQGDVPEL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GF 349 ++ ++ +PPRRGI + + I+Y SCN T A+D++ L G+ Sbjct: 385 LPKILKREDVGAIVFDPPRRGIEESALKSVVKNKIEKIVYISCNPATFARDVKILAENGY 444 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 + +V DMFP T H EV+ ++ + Sbjct: 445 VLRKVAPVDMFPQTGHIEVVGMIQR 469 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 72/385 (18%), Positives = 140/385 (36%), Gaps = 25/385 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPV--SGPEQG 54 C G C C W QL+AK +L++ L +E P+ + + G Sbjct: 71 CPF--VGICGGCSWGNLSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWG 128 Query: 55 FRNKAKMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +RNK ++ + + LGM D + CPL+ F ++ + Y Sbjct: 129 YRNKIELEPTVVNGRVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGALN------Y 182 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 L+ + + S+ + + + + R + + I + Sbjct: 183 LSGSHNLGLERVGIRASRRTKALEVALWTPTGSFP---RSQVSRVLADAAHPTSIVRVMS 239 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 L + + E + + + SFFQ N A L + + Sbjct: 240 KGEKKARRVSKVEMLAGEGSWTENIAEGQMRLSAPSFFQVNTKGAEILIELVMEALDPQE 299 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + DL+CG G F L A + +E A+ +++ L + D+ + Sbjct: 300 DELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDAVRE 359 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFR 350 Q ++++V+PPR G+ D +++ + + Y SC+ T+A+D++ F Sbjct: 360 FPDQD--ADVLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFS 417 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 ++ D+FP T H E + L + Sbjct: 418 PVKITPVDLFPQTFHCETVVHLKRN 442 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 147/384 (38%), Gaps = 25/384 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGP-EQGFRNK 58 C L+ G C C W QL K + L A P E V+ P G+R++ Sbjct: 72 CPLF--GSCGGCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSR 129 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPED--LCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + + G+ +G + + CP+ + +L+ + Sbjct: 130 VQFKLHGAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDPT---- 185 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ I L ++ +++ ++ + QL Q + + Sbjct: 186 ----KIPQINLECAEKGAVVIVNYI---GDDHQGAKAFFRERAAQLEQATALYLQTGRKS 238 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ Q+ + L RP F Q N A S L R++ Sbjct: 239 TLQKVFGDDLLQYSQEGESSTAPACSLTYRPGGFAQVNAAQNSALLRLVREFADCRRDDQ 298 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG G F L A +TGIE ++IA A+ +A G+T ++F D+ A Sbjct: 299 ILDLYCGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGK 358 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 G ++++PPR G L +++ + IIY SC+ T+A+D L G+ + Sbjct: 359 LMGDGRRFPTIILDPPRSGAA-DLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTV 417 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 DMFP T H E +TLL ++ Sbjct: 418 VSSVPVDMFPQTFHLESVTLLRRR 441 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 149/395 (37%), Gaps = 37/395 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV------EEWCAPVSGP--EQ 53 +C C C W QL AK A++ L EE P + Sbjct: 81 RCE--AGAACGGCPWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQW 138 Query: 54 GFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCD---CPLYPASFAPVFAALKPFIARAGL 110 G+RNK ++ + HR+G D+ CPL + A AL+ + A Sbjct: 139 GYRNKLELGAAMDERGTFQLGFHREGAH-DIASPGACPLAHDAIAKAPKALRGALRFAQG 197 Query: 111 TPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITV 170 + G + + + S G + + + + + ++ V Sbjct: 198 SA-----DLGIFR-VGVRHSLHTGDLEVALWTSPGSFPRG--HIAKTVKSAVKATSIVRV 249 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 P ++G L + E+ D SFFQ N A A +L A + + Sbjct: 250 MADPGKARKIKGVET--LDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLG 307 Query: 231 QLPVKH---------MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT 281 + + DL+ G G F + A ++ +E A ++ +++A + Sbjct: 308 GRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD 367 Query: 282 RLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 L+ D+ + G + ++V+PPR G+ + + ++ AP + Y SCN T A+ Sbjct: 368 -LEVIGGDAARELPELGG-LDALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWAR 425 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D+ G+R+ VQ DMFP T H EV+++ + Sbjct: 426 DVARFESQGYRLTSVQPVDMFPQTYHVEVVSVFER 460 >UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgroup RepID=B5RIS0_DROME Length = 640 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 152/415 (36%), Gaps = 53/415 (12%) Query: 14 CQWIMQPIPEQLSAKTADLKNLLADFPVE---------------EWCAPVSGPE-QGFRN 57 C +Q+ K+ ++ LLA + E ++ + P G+RN Sbjct: 190 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 249 Query: 58 KAKMVVSGSVEKPLLGML----HRDGTPE--DLCDCPLYPASFAPVFAALKPFIARAGLT 111 K + V + ++ + DG+ E ++ D P P + + + ++ Sbjct: 250 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 309 Query: 112 PYNVARKRGELKYILLTESQSDGGMMLRF-VLRSDTKLAQLRKALPWLHEQLPQLK---- 166 P+N G + +++ S + G +ML + S+ + + L L Sbjct: 310 PFNPDGNIGHFRQLMVRCSSATGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDAP 369 Query: 167 ----VITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLY 222 + A +++ + + + I P +FFQ N A+ LY Sbjct: 370 YKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANVLY 429 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR 282 A D V M D+ CG G L A ++ G+EI +AI A+ +A G+ Sbjct: 430 QKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKN 489 Query: 283 LQFQALDSTQFATAQGDV-----------PELVLVNPPRRGIGKPLCDYLSTM-APRFII 330 +F ++ F + + +V+PPR G+ + + A ++ Sbjct: 490 AKFFTGNADDFIKSMVREALYDQEPGKPLDLIAVVDPPRAGLHHRSIAAIRSADAINRLV 549 Query: 331 YSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 Y SCN + ++ EL F + DMFPHT H E++ L ++ Sbjct: 550 YVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFERE 604 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 140/381 (36%), Gaps = 35/381 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAP----VSGPEQGFRNK 58 C + C C + +Q+ K L L S +RN+ Sbjct: 65 CRYFR--YCGGCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNR 122 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + G +G R+ ++ C L + + ++ + P V Sbjct: 123 TQLKIRGEK----IGFYMRESRQIINIDSCLLLKEDINGMISGVREILKFLIFQPEQVHI 178 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSD-TKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 S SDG +++FV + + K L + + I + Sbjct: 179 -----------YSSSDGEALVKFVYQKRVRRFPLGLKHLRSFLSEKLKGAGIYHRKDDLL 227 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 L + + E + + + SFFQ N L + + Sbjct: 228 -------KRDVLLGESYIYEEYGGIKFRVSMDSFFQVNVYQVENLLDAVLQNIGDH--EK 278 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 DLFCGVG L A ++ GIE A+ A + + +F +D+ + Sbjct: 279 AVDLFCGVGTLTLPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDANRSGGF 338 Query: 297 QGD-VPELVLVNPPRRGIGKPLCDY-LSTMAPRFIIYSSCNAQTMAKDIRELPG-FRIER 353 + P+LV+++PPR G+ L L T + + IIY SCN T+A+D+ L + +E+ Sbjct: 339 IAELKPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEK 398 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 V + DMFP T H E + +L K Sbjct: 399 VYMIDMFPQTYHIESVVVLQK 419 >UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8 Tax=Thermococcaceae RepID=Y1259_PYRHO Length = 412 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 151/378 (39%), Gaps = 31/378 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C+ + G+C C W EQL K E S FRN + Sbjct: 62 KCSHF--GKCGGCLWQGLRYREQLKLKEEI----FKRITGIEAEIKGSPRIWYFRNISNF 115 Query: 62 VVSGSVEKPLLGM--LHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 +++ + +G T ++ +CP++ ALK F+ + L P+N + Sbjct: 116 IITVNG----IGFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWN--WRE 169 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 G++ Y+ + E + G +M+ + L E I +++ Sbjct: 170 GDVHYLQVREGKFTGEVMVNIIAHVPL------NYREALMEAFNFADSIYWSLKADKKDD 223 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 G + L + + E+ + I P FFQTN L + + + D Sbjct: 224 PRGFPTLVL-GNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCE---GSKVLD 279 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 L+ G+G L+ A ++TG+E+ ++ AK+SA + F + A+ + Sbjct: 280 LYSGIGTLSLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAED---AELE 335 Query: 300 VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 E ++V+PPR+G+ K + P +IY SCN D R ++++ L Sbjct: 336 GYETLIVDPPRKGL-KEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVDDALLI 394 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFPHT H E + LV++ Sbjct: 395 DMFPHTPHIEAVIKLVRR 412 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 154/429 (35%), Gaps = 60/429 (13%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV----EEWCAPVSGPEQG--FR 56 C +D RC C W+ +QL+ K + +++ + +S +Q +R Sbjct: 113 CPHFD--RCGGCTWLDVAYDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYR 170 Query: 57 NKAKMVVSGSVE----KPLLGMLHRDGT----PEDLCDCPLYPASFAPVFAALKPFI--- 105 NK + + + +P G+ C L V A + Sbjct: 171 NKMEFAFAQVGDNSSGRPAFGLRPAGDHTGLVEVFTSGCVLQQVVADKVLARCAAHLHAM 230 Query: 106 --ARAGLTPYNVARKRGELKYILLTESQSDGG------MMLRFVLRSDTKLAQLRKALPW 157 A L +N G L+ + L + G +M+ D + + +KA Sbjct: 231 ADVSALLPVFNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFAA 290 Query: 158 LHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAV 217 L L + + + E L ++ V + +SFFQTN Sbjct: 291 LAADLATIDCVQSVVHERVGDNNE-NQITVLHGPATISITLRGVVFALSVKSFFQTNTKQ 349 Query: 218 ASQLYATARDWVRQLPV--KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A L + + + + DLFCGVG FGL A+ + G EI EA+ AK++A Sbjct: 350 AEILVESVEEACALTGENTETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNA 409 Query: 276 AELGLTRLQFQALDSTQFATAQG-----------------DVPELVLVNPPRRGIGKPLC 318 + F D Q + + P++V+V+P R G+ L Sbjct: 410 VANRIENATFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTLV 469 Query: 319 DYLSTMAPRFIIYSSCNAQTMAKDIRELPG-------------FRIERVQLFDMFPHTAH 365 L ++ I+Y SCN T A+D+ L +R+ D+FPHT H Sbjct: 470 AILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTPH 529 Query: 366 YEVLTLLVK 374 E + +L + Sbjct: 530 VENIVVLER 538 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 173/384 (45%), Gaps = 20/384 (5%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW--CAPVSGPEQ--GFRN 57 +C + C+ C ++ P QL K + LK L + + V G E+ G+RN Sbjct: 64 KC--FVHHACKGCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRN 121 Query: 58 KAKMVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + K+ VS + E L + + ++ C ++ + + + R G+ PYN Sbjct: 122 QCKLPVSLNKEGQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNH 181 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP- 174 K G ++ +++ DG V D L + + + + + +I Sbjct: 182 HTKSG-IRSLVVR--GFDGKYQCTLVTGHDELSCSLIEDILHIR----GMYSLWQSIHTV 234 Query: 175 VHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + A + G+ ++L ++ L F+ + L + P+SFFQ N A A LY T V+ Sbjct: 235 KNTAEVFGKQMVHLGGEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHK- 293 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 K + + + G+G L+ ++ GIE +A+ A Q+A ++F D+ Sbjct: 294 KRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKL 353 Query: 295 T--AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRI 351 T ++ ++++V+PPR G+ + + L + IIY SCN T+ K++ L +R+ Sbjct: 354 TYLSKNKEIDVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRV 413 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 +RV DMFP+T H E + LL + Sbjct: 414 QRVIPIDMFPNTQHVETVVLLSHK 437 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 33/387 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C Y C C EQ+ K + L +LL+ + + +P++ +RNK Sbjct: 76 KCPHYQM--CGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNK 133 Query: 59 AKMVVSGSVEKP--LLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 A++ +K ++G R+ ++ CP+ + L+ I + Sbjct: 134 ARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLI--------D 185 Query: 115 VARKRGELKYILLTESQSDGGMMLR-FVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQ 173 + + I + ++ ++ R ++ +++RK + + + Sbjct: 186 TMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYK------VFLQPG 239 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + ++ + L + + P F Q N + ++ A + Sbjct: 240 GLDSVFCFYPSDAHAYLSYELPDY--QITFQFHPNDFTQVNAELNRKMVKQAIQLMELKN 297 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL---DS 290 + DLFCG+G F L A ++ G+E + A +A +T + F A D Sbjct: 298 SDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDV 357 Query: 291 TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---P 347 + VL++PPR G + + ++ P I+Y SCN T+A+D L Sbjct: 358 MEVRNLVNTSFSKVLIDPPRSGA-LEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQK 416 Query: 348 GFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+ + + DMFPHTAH E + L K Sbjct: 417 GYVLITAGVMDMFPHTAHVESIALFQK 443 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 147/383 (38%), Gaps = 25/383 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPV-SGPEQGFRNK 58 C ++ G C C W Q+ KT +LL A E + + G+R++ Sbjct: 68 CPVF--GICGGCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSR 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLC-DCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V+ K LG D+ C + S +L+ + Sbjct: 126 VQLKVNYQGGKTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDP----- 180 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 G + I + D + V + +A++ + L E + L Sbjct: 181 ---GNISQIDIARG--DDESISVIVNHAGASVAEVSEYLLQHRE-ISDLIGSMFIRHKNS 234 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + G + ++ L+ +F Q N QL D+ + Sbjct: 235 TTSIFGAEHLSYRISGNTLPGGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEK 294 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+CG G F + A +TG E +IA A+++A G+T + F DS Sbjct: 295 VLDLYCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKK 354 Query: 297 QG---DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRI 351 + ++V+++PPR G + ++ + IIY SC+ T+A+D+ L GF++ Sbjct: 355 LAAARETFDVVVLDPPRNGAA-EVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQV 413 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 +Q DMFP T H E +TLL K Sbjct: 414 INIQGVDMFPQTYHLESVTLLTK 436 >UniRef50_D0WLG7 23S rRNA (Uracil-5-)-methyltransferase RumB n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WLG7_9ACTO Length = 436 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 164/421 (38%), Positives = 226/421 (53%), Gaps = 53/421 (12%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--------FPVEEWCAPVSGPE 52 M+C ++ C SC EQL+AK A ++ LL P EW P + E Sbjct: 1 MRCRYLESDLCHSCTRANVAYAEQLAAKDASVRALLERSARANGAAAPDVEWNPPFASAE 60 Query: 53 QGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTP 112 +GFRNKAK+ V G++ P LG+L D D+ CPLY + A L+ FI AGLTP Sbjct: 61 KGFRNKAKLAVGGTLSNPTLGILGSDKRGIDIAGCPLYEPAVASGIEPLREFIGLAGLTP 120 Query: 113 YNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNI 172 ++V RGELK ++L DG +M+RFVLRS L ++RK + L + LP++ V++VN+ Sbjct: 121 FDVPSGRGELKSVIL-TGSPDGELMVRFVLRSTESLVRIRKHMSLLRQWLPRIAVVSVNL 179 Query: 173 QPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 P A++EGE EI L +Q+L DV L +RPQSFFQTN VA LY AR+WV L Sbjct: 180 LPERKAVLEGEKEILLGPEQSLRMDLGDVALRLRPQSFFQTNTRVAVGLYRQAREWVGLL 239 Query: 233 -----------------------------------------PVKHMWDLFCGVGGFGLHC 251 +WDL+CGVGGF LHC Sbjct: 240 CDAEGGGSHDLEAKRAEPADSEAKGAKAKGAKPASSASAGGRSIELWDLYCGVGGFALHC 299 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRR 311 A P ++TG+E++++A+ A+ SAA G+ F DS + ++V+VNPPRR Sbjct: 300 AGPGRRVTGVELSAQAVESARASAAAAGID-ADFIVGDSLSA-ARELGTADVVVVNPPRR 357 Query: 312 GIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTL 371 GIG L ++ RF++YSSCN ++A D+ +P FR R ++FDMFPHT H E L L Sbjct: 358 GIG-GLASWIDASQIRFVLYSSCNPASLAADVASMPSFRPVRARVFDMFPHTGHTETLVL 416 Query: 372 L 372 L Sbjct: 417 L 417 >UniRef50_A6DJZ3 RNA methyltransferase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJZ3_9BACT Length = 409 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 163/380 (42%), Gaps = 15/380 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNL------LADFPVEEWCAPVSGPEQGFR 56 C ++ C C +QL K L+ L ++ E A S + +R Sbjct: 36 CQHFE--ECGGCSLQQHSYEQQLEIKKQALERLVRETPGMSSLAKLEVEAVASARDYKYR 93 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + +V+ + +L +C L ++A GL Y+ Sbjct: 94 QRMDFIVTPEGSGQRRCDGQKG--IVELNECSLVEDENYAIYAKTLGLSREVGLEAYDQN 151 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + G L+YI++ ++S G ++ + S A+L + L ++ ++ + N+ Sbjct: 152 KYYGCLRYIIIRRTRS-GQQLVSLLTTSSADEAKLEQIAQKLLDE--GVQSVYWNVNDNR 208 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + GE + Q+ + E + P +FFQ N VAS Y + R+++++ K Sbjct: 209 LDDSLGECRKF-WGQEFITENLLGRDFILGPLTFFQANHDVASAAYTSVRNFIKECQPKK 267 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DL+ G + +T +E E + A+++ G+ ++F D +F Sbjct: 268 IHDLYSGTCTMPVIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDVAEFLKQ 327 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQ 355 E ++NPPR+G+ + + +AP + Y SC+ +++ +D+ L ++ ++Q Sbjct: 328 SDLEMEFSVLNPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREYKPLKIQ 387 Query: 356 LFDMFPHTAHYEVLTLLVKQ 375 LFDMFP T H+E L LL K+ Sbjct: 388 LFDMFPQTEHFETLVLLTKK 407 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 13/366 (3%) Query: 16 WIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVS---GPEQGFRNKAKMVVSGSVEKPLL 72 +I ++L K + L E +RNK ++ ++ E L Sbjct: 77 FINLKYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNLNYRNKIELKMNEDFE--LC 134 Query: 73 GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132 + + L +CPL L+ + + Y+V G LK I + S Sbjct: 135 YCVDNGESKIKLENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISIR-SNY 193 Query: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQ 192 +M+ V++ D + + + L E +L +NI +I+ G+ + ++ Sbjct: 194 KSEIMITVVVKKD--IVEAHNFVKSLSE-YEKLVSGYININTKKASIIMGQEIKLIFLKK 250 Query: 193 ALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCA 252 + ++ I P+SFFQ N LY A+D++ K++ DL+ G+G ++ + Sbjct: 251 SFTDKIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYFS 310 Query: 253 TPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP--ELVLVNPPR 310 ++ G+E+ +A+ AK++ + ++F S + +++ V+PPR Sbjct: 311 ENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEILKNNNIDIISVDPPR 370 Query: 311 RGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHYEV 368 +G+ K + D + + ++Y SCN T+ +D++ GF +++V+L DMF T H EV Sbjct: 371 KGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKVKLCDMFSKTGHCEV 430 Query: 369 LTLLVK 374 + + K Sbjct: 431 VVEIEK 436 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 151/388 (38%), Gaps = 35/388 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPE-QGFRNK 58 C A C C Q+ K L+ A F E+W AP+ P+ G+R K Sbjct: 78 CEF--ADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRK 135 Query: 59 AKMVVSGSV--EKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V E L+G + + D+ C + L+ + G+ ++ Sbjct: 136 ARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELL--HGMAAFDR 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + + + M F D K + Q + + +QP Sbjct: 194 ------IAQVEVACGDDTAAM--VFRNMDDLVPDDREKLIA-----FGQAHDLHIYLQPK 240 Query: 176 HMAIMEGETEIYLTEQQ--ALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQ 231 + + L R + D+ + P F Q N + + A +W+ Sbjct: 241 GPDTVHRIWPES-GGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDV 299 Query: 232 LPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS- 290 P + + DLFCG+G F L A Q+ G+E + +++A L+ ++F D Sbjct: 300 QPGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLH 359 Query: 291 --TQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 + + + +L++PPR G + +C YL+ I+Y SCN T+A+D + Sbjct: 360 GDFTGQSWAKEGFDKILIDPPRSGA-EEICKYLTAFGANRIVYVSCNPATLARDAGVMVR 418 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+ + + DMFPHT H E + L + Sbjct: 419 NGYRLVQAGVMDMFPHTTHVESIALFER 446 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 152/381 (39%), Gaps = 37/381 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKM 61 +C + G C CQ + Q +K L ++ E +SGP G+R +A++ Sbjct: 80 RCPHF--GVCGGCQQQHASVALQQRSKAQALCRMMKR----EVDEVISGPAWGYRRRARL 133 Query: 62 V--VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + +G D+ CP+ + L+ ++ + R Sbjct: 134 SLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCLSSL-----DGVRH 188 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 G ++ + +T +M+ L L A E + + + + P Sbjct: 189 LGHVELVDVTSGP----LMVL------RHLKPLSAADREKLECFSHSEGVALYLAPQS-- 236 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 +T +L + E + + L P+ F Q N AV Q+ A A +W+ P + + Sbjct: 237 ----DTLEHLNGEMPWYES-DGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVL 291 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 DLFCG+G F L A + G+E + + +A L + F + + T Q Sbjct: 292 DLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQP 351 Query: 299 ---DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIER 353 + VL++P R G + ++ + PR ++Y SCN T+ +D L G+R R Sbjct: 352 WAQQGFDKVLLDPARAGAA-GVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVR 410 Query: 354 VQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT H E + L + Sbjct: 411 LAMLDMFPHTGHLESMALFER 431 >UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0H1_9FIRM Length = 400 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 58/374 (15%) Query: 57 NKAKMVVSGSVEKPLLGML-HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 NK + +G + DC + A + +K + ++ Y Sbjct: 28 NKIE--AKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGYEE 85 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQL------------- 162 +G L++I L + S G ++L VL L ++ L L Sbjct: 86 ETGKGLLRHIFLRKGFSTGEILLCLVLNGK-SLPHGKELWENLQGLLLSAEEGDLQREED 144 Query: 163 ----------------------PQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFND 200 + + VNI + G + L + ++ ++ + Sbjct: 145 VSCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIEDKIGE 204 Query: 201 VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTG 260 + I SF+Q NP ++Y A ++ + +WD +CG+G L A Q+ G Sbjct: 205 LSFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLAQKAKQVYG 264 Query: 261 IEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP-----------------EL 303 +EI EAI AK++A + GL +F + + + ++ Sbjct: 265 LEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADCGIGDMVDV 324 Query: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFP 361 V ++PPR+G + + ++P+ I+Y SC+ ++A+DI+ L G+ +E+ D FP Sbjct: 325 VSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEKWVGIDNFP 384 Query: 362 HTAHYEVLTLLVKQ 375 T H E + LL K+ Sbjct: 385 RTGHVETIALLQKE 398 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 159/378 (42%), Gaps = 29/378 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMV 62 C ++ C C + +QLSAK L+ L + + +S G+R +A++ Sbjct: 86 CQHFNL--CGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLA 143 Query: 63 VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGE 121 + + +LG + + C + + F LK + L G Sbjct: 144 IDIKKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLENDLA--------GV 195 Query: 122 LKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIME 181 L ++ L E + R + +L+ A E+ + + Q + Sbjct: 196 LGHVELLEDTKGVSALFRL---TSPISDELKNAWEDWAEKGR----VALYWQAPKV---- 244 Query: 182 GETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLF 241 G+ E+ L + + D+ L PQ F Q N A+ ++ A DW+ + DLF Sbjct: 245 GKAEVALEKMRY--YDLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLF 302 Query: 242 CGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVP 301 CGVG F L A + G+E+ + A+++A G L F A D T+ + Sbjct: 303 CGVGNFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELFKQ 362 Query: 302 EL--VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLF 357 + VL++PPR G D + + P I+Y SCNA T+A+D L G+R+ RV L Sbjct: 363 TITKVLLDPPRAGAF-EFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLM 421 Query: 358 DMFPHTAHYEVLTLLVKQ 375 DMFP T+H E + LL K+ Sbjct: 422 DMFPQTSHVETMMLLQKK 439 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 144/385 (37%), Gaps = 31/385 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---APVSGPEQGFRNK 58 +C + C C Q++ K L + E P+ GP G+R++ Sbjct: 78 RCRHFAL--CGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSR 135 Query: 59 AKMVVSG--SVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ + L+G D+ DCP+ + A I L Sbjct: 136 ARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGLSL----- 190 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R L I + L F + D + + + + + V IQ Sbjct: 191 ---RERLPQIEAAVGEER--TALVFRVLEDPTAEDFARL-----ARFGKDQGLDVYIQRE 240 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + + +V P F Q N A+ Q+ + P + Sbjct: 241 GRDSVAPVYPETAHDLSYSLPEW-EVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEE 299 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS---TQ 292 + DLFCG+G F L A +TG+E +EA+A A ++AA+ G+ ++F D Sbjct: 300 RVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPES 359 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGF 349 + G VL++P R G + + I+Y SCN T+A+D L G+ Sbjct: 360 CGSWAGREYHKVLLDPSRSGA-LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGY 418 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 R+ + + DMFPHTAH E + + + Sbjct: 419 RLLKAGVMDMFPHTAHVESIAVFER 443 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 152/384 (39%), Gaps = 37/384 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C +D +C C I Q K L +L+ F E CAP+SG +R +A Sbjct: 83 CPHFD--KCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRA 140 Query: 60 KMVVSGSVEKPLL--GMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ + G + ++ C + + + L + + Sbjct: 141 RLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQL-------- 192 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + L ++ LT++ + ++LR L + + V +Q Sbjct: 193 SGKKALGHVELTQADNGNFVVLRVT-------KVLSDKDKARLVEFANKHEVIVLLQDDD 245 Query: 177 MAIMEGETEIYLTE---QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 +L Q A +D+ L P +F Q N V + + A +W+ Sbjct: 246 AQ------CEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKA 299 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + + DLFCG+G F L A ++ G+E + A+ +A + GL ++ F D + Sbjct: 300 GERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSAD 359 Query: 294 ATAQ--GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 + + + +L++P R G + L + P+ ++Y SCN ++A+D + G+ Sbjct: 360 LSKEPWLGKVDKMLIDPARAGAYES-MQSLKKLKPKALVYVSCNPASLARDSEVILKQGY 418 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 +++++ L DMFP T H E + L Sbjct: 419 QLKKIGLIDMFPQTHHLESMALFE 442 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 14/368 (3%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQ--GFRNKAKMVVSGSVEKPLL 72 ++ +QL+ K + +L ++ +RNK ++ V + Sbjct: 85 PLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQGTTFKM 144 Query: 73 GMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQ 131 G ++ + L + + F+ + + + K+ ++ I + S+ Sbjct: 145 GFYVKNSHILVEQTSYDLAYKEIGNILEEI-DFLCKKEVLLEDNFIKKNKITSITVKYSE 203 Query: 132 SDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 G + F + L E+ L ++ + I+ I L + Sbjct: 204 KTGESQVIFESLKQAPFPAS--FIKRLIEKFDNLNIVQIVCNEEKTKIL---KLIVLAGK 258 Query: 192 QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHC 251 +++ + + + + QSF+Q N +++Y T + + + D F GVG G++ Sbjct: 259 ESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYL 318 Query: 252 ATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ---GDVPELVLVNP 308 A Q+ +EI+ +A K++A L L+F + D +F + ++++ +P Sbjct: 319 AKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRRQNIDVIVFDP 378 Query: 309 PRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAHY 366 PR G+ K + + + + I Y SCN +T+ +D++ G++IE VQ FDMFP T H Sbjct: 379 PREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFPQTYHV 438 Query: 367 EVLTLLVK 374 E L LL K Sbjct: 439 ETLALLSK 446 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 140/376 (37%), Gaps = 32/376 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC---APVSGPEQGFRNKA 59 C + GRC C + EQL+ K+ LK L E + +RN+ Sbjct: 65 CPYF--GRCGGCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRV 122 Query: 60 KMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKR 119 K V LG + D + CP+ + + LK F + Sbjct: 123 KFKVRNKE----LGFVGVDEDFVKVEHCPISSKAINDLMPFLKEFAKHFNPS-------- 170 Query: 120 GELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAI 179 +I + S + M++F +L+K L + + IT+ Sbjct: 171 ----WISVFYSDTQKEYMVKFASYDYIDKEKLKKFKEHLTPK--NVVGITLVKDDKR--- 221 Query: 180 MEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWD 239 + I + I SFFQ N VA +L T + ++ + D Sbjct: 222 --EDKIILSIGTPFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLE--KENYFDRVLD 277 Query: 240 LFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGD 299 + GVG FGLH A + +I +I A+ SA + + F +S F Sbjct: 278 DYGGVGLFGLHLARRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLY 337 Query: 300 VP-ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLF 357 L++++PPR G+ K + P +I Y SC ++A+D++ L ++I+ + + Sbjct: 338 KHANLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMA 397 Query: 358 DMFPHTAHYEVLTLLV 373 DMFP T H E L Sbjct: 398 DMFPQTYHIETAVKLE 413 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 146/397 (36%), Gaps = 40/397 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWC------APVSGPEQGFR 56 C Y G C C + Q + K L L+ F AP+ P +R Sbjct: 83 CPHY--GHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYR 140 Query: 57 NKAKMV--VSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 +A++ + + + LG + CP+ + + +AR Sbjct: 141 RRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKA- 199 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPW--------LHEQLPQL 165 L ++ L +Q+D G + A +R + L + Sbjct: 200 -------SLGHLEL--TQADNGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGA 250 Query: 166 KVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATA 225 + + P + LT + + V P +F Q N V ++ A Sbjct: 251 LTDVMTMAPAEDEGATQVEQSALTLPEYALSQ-GQVSCQFTPGNFVQVNAEVNQRMVEQA 309 Query: 226 RDWVRQLPVKHMWDLFCGVGGFGLHCATPDM-----QLTGIEIASEAIACAKQSAAELGL 280 +W+ + + DLFCGVG F L A ++ G+E E + A+++A L Sbjct: 310 VNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNL 369 Query: 281 TRLQFQALDSTQ--FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQT 338 L F D + + +L++P R G + +L M P+ ++Y SCN + Sbjct: 370 ANLSFYHADLSADLSNEKWLGKIDKLLLDPARAGAFES-LQWLQKMKPKKVVYVSCNPAS 428 Query: 339 MAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 +A+D L G++++++ + DMFP T H E + L Sbjct: 429 LARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 154/400 (38%), Gaps = 45/400 (11%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL---ADFPVEEWCAPVSGPEQGFRNKA 59 C + G C C Q++ K + L +L A+ + W PV G G+R KA Sbjct: 128 CPHF--GVCGGCNLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKA 185 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V E L+G R +L +C + LK I+ Sbjct: 186 RLGVRYVVKKETALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLD------- 238 Query: 117 RKRGELKYILLTESQS-----DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVN 171 R ++ + L + DG + ++R+ L+ + L + + Sbjct: 239 -SRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDGD--IDKLKVFFAA-RNWQLY 294 Query: 172 IQPVHMAIMEGETEIYLTEQQALAERFN---------DVPLWIRPQSFFQTNPAVASQLY 222 +Q + I L + L+E+F D+ P F Q N +V Q+ Sbjct: 295 LQSKGADSI---QRIALRDTDDLSEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMT 351 Query: 223 ATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ---LTGIEIASEAIACAKQSAAELG 279 A D + + + DLF G+G F L A + + G+E + A A +A G Sbjct: 352 KLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTARAADNARRNG 411 Query: 280 LTRLQFQALDSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 + +F + D T T + + +L++PPR G + YL I+Y SCN Sbjct: 412 INNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAW-EIMQYLPKFNAERIVYVSCNP 470 Query: 337 QTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 T+A+D + L G+R+ + DMF HT H E + K Sbjct: 471 ATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEK 510 >UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XVW9_BRAFL Length = 650 Score = 301 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 76/415 (18%), Positives = 144/415 (34%), Gaps = 56/415 (13%) Query: 15 QWIMQPIPEQLSAK---TADLKNLLADF------PVEEWC--------------APVSGP 51 P EQL K + L+ + W ++ Sbjct: 233 PLWNVPYEEQLKQKTESQKVVLGKLSRAIENVNPGLGSWVVQQRKQYDNMCCKLEDITPS 292 Query: 52 E--QGFRNKAKMVVSGSVEKP--LLGML---HRDGT--PEDLCDCPLYPASFAPVFAALK 102 +RNK + + S E +G ++ G+ DCP P + + + Sbjct: 293 PILNNYRNKNEFNIGISPEGKEKTIGFRLGRYKGGSCTVVSPYDCPNLPDTAKDMVRIFQ 352 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR-SDTKLAQLRKALPWLHEQ 161 ++ ++ + Y+ + +G K + + + +M+ D ++ K L + Sbjct: 353 TYLEQSTRSGYDTEKHQGHWKQLTVRTT-QGSEVMVMVQFNVQDLSEEEIEKEKQLLKDY 411 Query: 162 LP-------QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 + + E + L ++ + E+ + I P +FFQ N Sbjct: 412 FSTGPGKDCGITSLFFQAHKQRRPGDEEASYQLLLGKEVIQEKLLGMTFRISPDAFFQVN 471 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 A LY+ DW + D+ CG G GL A ++ G+E+ +A+ AK + Sbjct: 472 TLAAEVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVN 531 Query: 275 AAELGLTRLQFQALDSTQFATAQGDV----PELVLVNPPRRGIGKPLCDYLSTM-APRFI 329 A G+ +F + + +V+PPR G+ + L + Sbjct: 532 ANINGIDNAEFLCGKAEDILPDLVRRLYGTDLVAVVDPPRAGLHTRVISVLRKCSNLTKL 591 Query: 330 IYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +Y SCN+Q+ + +L FR R D+FPHT H E++ + Sbjct: 592 VYVSCNSQSAMPNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRHSELIIQFDR 646 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 32/386 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 CA + G C C +Q+ K LK+ L F EEW AP+ + +R +A Sbjct: 90 CAHF--GVCGGCSLQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRA 147 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + ++G D+ C + + LK + Sbjct: 148 RIGVRYIPKQNRLVMGFREHHSNHLTDIQQCKVLDQVLSDSLVELKTLLESL-------- 199 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + + +I L + +++R L +L + Q LK + Q Sbjct: 200 TGKAHIGHIELAMGDDEVSLLIR-------HLDELNVSDVNQLRQFTLLKGWQLYFQSKG 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + + + + + V P F Q N V +++ A + + + Sbjct: 253 IDSLHRVDDEHAPMRLHYSLEDFKVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGER 312 Query: 237 MWDLFCGVGGFGLHCATPD---MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ- 292 + DLFCG+G F L A ++ G+E + E + A ++A LT+ F + D T+ Sbjct: 313 VLDLFCGLGNFSLPLARCVGETGRVIGVEASDEMVERATENAQANYLTQASFFSQDLTKD 372 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 + + +L++PPR G + Y+ + I+Y SCN T+A+D L G Sbjct: 373 FSHHSWAKQGFDALLIDPPRSGA-YEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYG 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +++++ + DMF HT H E + L K Sbjct: 432 YQLKKAAVMDMFTHTEHVESIALFEK 457 >UniRef50_A9AW25 RNA methyltransferase, TrmA family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AW25_HERA2 Length = 423 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 97/378 (25%), Positives = 140/378 (37%), Gaps = 36/378 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C +Y RC C W Q I Q AK L L E A +G +R+ A Sbjct: 75 CPVYQ--RCGGCDWQYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHYRSVA 132 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ V + +G G + C + LKP + G Sbjct: 133 RVHV----DGQRVGFYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLPLIG--------- 179 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 L+ I L S +DG + + + + R + + + Sbjct: 180 ---LREISLRLSTTDGTIHGHLIGQGQ---SAWRSWARRWMSADATIAGV---------S 224 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 E + L + L E+ DV L I P SFFQ N A + ++ + Sbjct: 225 SATREGWMALAGAEYLYEQLGDVRLRIAPTSFFQANVERARAVLQQIECFLPLNNTTRLL 284 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 298 D FCGVG F L A GIE AI A+ SA L+ + + Sbjct: 285 DGFCGVGTFLLPLAHNIGHGWGIEEHPAAIRDAQASAKANQLSNVTLKTGKVEAILPQLK 344 Query: 299 DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIERVQL 356 +L +V+PPRRG+ + L P I Y SC+ T+A+DI+ L G+ I+ Q Sbjct: 345 QQFDLAIVDPPRRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQP 404 Query: 357 FDMFPHTAHYEVLTLLVK 374 D FP T+H E L LL K Sbjct: 405 HDFFPQTSHVESLVLLSK 422 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 158/373 (42%), Gaps = 22/373 (5%) Query: 15 QWIM----QPIPEQLSAKTADLKNLLADFPVEE--WCAPVSGPEQG--FRNKAKMVVSGS 66 Q +QL+ K L L + + W ++ E +RN+ K+ + Sbjct: 70 QLGHPFFGIEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQER 129 Query: 67 VEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYI 125 K + G+ + + + + + L + + Y+ K+G L+YI Sbjct: 130 QGKLVCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQG-LRYI 188 Query: 126 LLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH-MAIMEGET 184 ++ G + DT L K L +++P L + + GE Sbjct: 189 VIRCIH--GISQATLITGKDT----LNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFFGER 242 Query: 185 EIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGV 244 L ++ L F+ + L + P++FFQ N A LY A V P + + +CG+ Sbjct: 243 TKLLFGKKHLLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVD--PCHILVEAYCGI 300 Query: 245 GGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ--FATAQGDVPE 302 G L ++ Q+ GIE+ AI AK++A L F+ D+ + A+ + Sbjct: 301 GVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAKKQKID 360 Query: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFRIERVQLFDMFP 361 +L++PPR G+ + + + + P IIY SCN T+AK+I L ++I +Q FD+FP Sbjct: 361 TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTIQAFDLFP 420 Query: 362 HTAHYEVLTLLVK 374 T H E L LL K Sbjct: 421 QTPHVECLCLLSK 433 >UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAM0_PHYIN Length = 815 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 35/361 (9%) Query: 49 SGPEQGFRNKAKMVVSGSV-EKPLLGML---HRDGTPE--DLCDCPLYPASFAPVFAALK 102 S +G+RNK + +KP +G R+G+ +C V A ++ Sbjct: 452 SPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPDECINVSKEMKAVCAVMQ 511 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLH--- 159 + + + Y+V K G + + + +S S G +M+ + K + R A+ L Sbjct: 512 NIVETSDVPVYSVTTKSGVWRVLTVRQSVSTGELMVMVQVNLVGKTPEERAAVKDLVVKR 571 Query: 160 ----EQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 ++ + + A + + ++ + L E + + P +FFQ N Sbjct: 572 LTDESNAFKITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQVNT 631 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A +LY+ + + ++D+ CG G G+ + ++ GIEI A A+ +A Sbjct: 632 HGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASEGVGKVVGIEICKPATDDAQVNA 691 Query: 276 AELGLTRLQFQALDSTQFATAQGDVPE----------LVLVNPPRRGIGKPLCDYLSTMA 325 + + F + + + +V+PPR G+ + L Sbjct: 692 ILNNVQNVSFVNSKAEDVMKSLLQKKRDESEKHLNRVVAIVDPPRAGLHHNVLRALRACP 751 Query: 326 P-RFIIYSSCNAQ-TMAKDIRELPG----------FRIERVQLFDMFPHTAHYEVLTLLV 373 P I+Y SCN ++ +D L G F DMFPHT H E++ + Sbjct: 752 PVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCEMIIVFD 811 Query: 374 K 374 + Sbjct: 812 R 812 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 299 bits (767), Expect = 9e-80, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 147/383 (38%), Gaps = 26/383 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 QC ++ RC C Q++ K ++ L ++ P+ G +R++ Sbjct: 80 QCRYFE--RCGGCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDR 137 Query: 59 AKMVVSGSVE-KPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ VS + LG + + C L P + A++ + ++A Sbjct: 138 ARFSVSLDKSCRLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQ-------DLA 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ +L +S + + W +L I + I+ Sbjct: 191 EGGSIARFAEFYRG--SEITVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKV 248 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + L + L E + + RP F Q N + + A + + Sbjct: 249 SEPFYPQKDTIL--KYTLPE--FGIEMPFRPGDFTQINTDTNRLMVSRAIKMLDIRQGER 304 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQAL---DSTQ 292 + DLFCG+G F L A + G+E A + A+Q+A G + F A D T+ Sbjct: 305 VADLFCGLGNFSLPIAKSGASVVGVEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTE 364 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 A + +L++PPR G + + P+ I+Y SCN T+A+D L G+ Sbjct: 365 NTVASWGKFDKMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYI 424 Query: 351 IERVQLFDMFPHTAHYEVLTLLV 373 + +V + +MF HT+H E + + Sbjct: 425 LGQVGIMNMFAHTSHVESIAVFE 447 >UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 n=14 Tax=Chlamydiaceae RepID=Y883_CHLCV Length = 401 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 148/396 (37%), Gaps = 23/396 (5%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG--PEQGFRNK 58 M C G C C + L AK L L A PV P RNK Sbjct: 5 MNCKH--LGICGGCSSPQSAYADSLKAKEQILHELFAPIFPPSEILPVIPCDPVLRGRNK 62 Query: 59 AKMVVSGSVEKPLLGML---HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAG-LTPYN 114 + + E + + +C + + + + LT Y Sbjct: 63 MEFSFFQTKEGKKSLGFITPTKPKQGVPITECLMIHEDTMDILNLTRAWWDNHPELTAYY 122 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ----LKVITV 170 +G L + + + +M+ + + A + + L + I Sbjct: 123 PPFNKGSLCTLTVRIGSPERKLMVILTTSAREEYAVEKGIIEEWKNALINSSLPIVSIIW 182 Query: 171 NIQPVHMAIMEGETEIYLTEQQALAERF------NDVPLWIRPQSFFQTNPAVASQLYAT 224 + + + + + N +RP+SFFQ +++ Sbjct: 183 EEKVSAKNAPTYFRSHLIHGEPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIEI 242 Query: 225 ARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTR-L 283 A++++ + + DL+CG G G+ + ++ G+EI +AI AK++ + Sbjct: 243 AKEFMNPQGSETLLDLYCGAGTIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENLI 302 Query: 284 QFQALDSTQFATAQGD--VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 + D+ F D P++V+++PPR GI + YL + P+ IIY SCN + + Sbjct: 303 EVYLEDAKTFCRRHQDCPPPDVVVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQFE 362 Query: 342 DIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 + L G+ I++VQ D FPH+ H E + LL ++ Sbjct: 363 ECCSLISAGYHIKKVQPLDQFPHSPHLENIILLERE 398 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 141/380 (37%), Gaps = 28/380 (7%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKA 59 C Y +C C Q++ K L++ L P+ G G+R +A Sbjct: 66 CPHYS--QCGGCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRA 123 Query: 60 KMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 ++ S + LG R D+ CP+ A + + + + Sbjct: 124 RLSAHHSQGRTTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLN------RLH 177 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 ++ I L S + L ++ R L + LP I + Sbjct: 178 T-PVRTIELHHSPAAN----SLTLHTEHLPKAARAHLIQHAQSLPANWHIWLQTPHRPAQ 232 Query: 179 IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMW 238 + ++ +L E +P P F Q NP L A A ++ P + + Sbjct: 233 PLLPDSPQLSY---SLPEYALTLPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIA 287 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL-TRLQFQALDST---QFA 294 DLFCG+G F L A Q+ GIE + E A Q+A L R QF + D + Sbjct: 288 DLFCGLGNFSLPIAAAGAQVIGIEGSPELTERASQNARLNHLAERAQFHSADLFQTTEHT 347 Query: 295 TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 A + +L++PPR G + + PR I+Y SCN T A+D L G+R Sbjct: 348 VAGWGYFDKILLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFR 407 Query: 353 RVQLFDMFPHTAHYEVLTLL 372 + +MFP TAH E + Sbjct: 408 NAGIVNMFPQTAHVETVGCF 427 >UniRef50_A4C0T4 TRNA (Uracil-5-)-methyltransferase n=3 Tax=Flavobacteriales RepID=A4C0T4_9FLAO Length = 485 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 156/396 (39%), Gaps = 35/396 (8%) Query: 13 SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA------PVSGPEQGFRNKAKMVVS-- 64 +I PI Q K +L E S +RNK + S Sbjct: 89 GAPYIQLPIELQHKYKKESTLSLFKKIGKVENIDALFDEFVTSPNVFHYRNKMEYGFSAI 148 Query: 65 -------GSVEKPLLGMLHRD----GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPY 113 ++ LG R G + D L+ +K + GL P+ Sbjct: 149 GYDRITKRDKDEFTLGFKRRGVWWMGDDLN-KDSGLFDKQMEDHLKNIKQYCIETGLDPW 207 Query: 114 NVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLA-QLRKALPWLHEQL-PQLKVITVN 171 + ++ G +Y ++ +S ++ V S L K +L + +L + Sbjct: 208 HGPKREGFFRYFVVRKSFKTDELLCNLVTTSPELEKFDLNKFADFLKDIFGKRLAGLLHT 267 Query: 172 IQPVHMA--IMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWV 229 I I + + + + E+ + I +SFFQTNP A +LY ++V Sbjct: 268 INDETGDRTIATSGSLNLVYGKDKIVEQLLGLDFEISMKSFFQTNPKCAEKLYNKVVEYV 327 Query: 230 RQLPVKH----MWDLFCGVGGFGLHCATPDM--QLTGIEIASEAIACAKQSAAELGLTRL 283 + K + DLFCG G G A+ Q+ G++I + AI A+++A +T + Sbjct: 328 LEDKTKVDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVDIVASAIEDAEKNAKRNNITGV 387 Query: 284 QFQALDSTQF---ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMA 340 QF A D +F + + ++++P R GI + + ++Y SCN T A Sbjct: 388 QFFAADVGKFLTSHPEYENKIKTIILDPARAGIAPKTLQKIINLNADRMVYVSCNPATQA 447 Query: 341 KDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +D L G+ I+++ L D FPHTAH E + L K Sbjct: 448 RDTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEK 483 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 150/390 (38%), Gaps = 38/390 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE--WCAP--VSGPEQGFRNK 58 C ++ G C C W Q AK + L F E AP V+ G+R + Sbjct: 68 CPVF--GICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCR 125 Query: 59 AKMVVSGSVEKPLLGMLHRDGTPED--LCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ + S + +G R +C + + L+ + Sbjct: 126 AQFKIRWSGGRLHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEP----- 180 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ I + DG ++L D + + L + I + Sbjct: 181 ---DKIPQIDAATGE-DGHVLLVVHYIGDNP-GRAADFFRSIQPHLASVTGIHLQCGRKD 235 Query: 177 MAIMEGETEIYLTEQQALAERFNDV-------PLWIRPQSFFQTNPAVASQLYATARDWV 229 + ++ +L+ + L R F Q N L + A Sbjct: 236 SIM-------HVWGVDSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLA 288 Query: 230 RQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALD 289 P + + DLFCG G F L A+ QL G+E +I A+++A G+ ++F A+D Sbjct: 289 GVGPGRRVLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAID 348 Query: 290 STQFA---TAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL 346 + A G+ + V+++PPR G + + ++ +AP I+Y SC+ T+ +D+ L Sbjct: 349 AADGTRRLRAAGEHFDTVILDPPRTGARDAVGE-VAILAPERIVYVSCDPPTLGRDLGVL 407 Query: 347 --PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 G+R+ DMFP T H E +TLL++ Sbjct: 408 RKAGYRVVGSHGVDMFPQTYHIESVTLLIR 437 >UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=Q17NM7_AEDAE Length = 625 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 76/418 (18%), Positives = 142/418 (33%), Gaps = 57/418 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEW-----CAPV--------------------S 49 +QL K ++++N+L E W P S Sbjct: 171 ALAYLSYEDQLVQKQSEMRNVLIKLGKEIWKTCPALRPYVEEQRKLHDGLPCKLERIRKS 230 Query: 50 GPEQGFRNKAKMVVSGSVEKPLLGMLHRDG---TPEDLC---DCPLYPASFAPVFAALKP 103 G+RNK + + + + D+ + + Sbjct: 231 PQTDGYRNKCEFSIGKDDQGEIRVGFRVGSYSNGFLDVESPQNLKNVSDKMKDTVKFYEE 290 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSD-TKLAQLRKALPWLHEQL 162 F+ + L Y+ +G + + + S S G +M+ + +L + + E Sbjct: 291 FVRNSKLDIYSPETYQGHFRQLTVRTSSSTGDVMVVIGIHPQSLTEEELAQFKDSIVEHF 350 Query: 163 P-------QLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 + I + + +L + + + + + I P +FFQ N Sbjct: 351 TSDKGKEIGISSIYLEKIGKRESGQTVNPVEHLHGETHIVDVIHGLKFRISPLAFFQINT 410 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A LY A D + D+ CG G GL A Q+ G+E+ +AI AK +A Sbjct: 411 PSAEVLYQCAIDLADATQQTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNA 470 Query: 276 AELGLTRLQFQALDSTQFATA-------QGDVPELVLVNPPRRGIGKPLCDYLSTMA-PR 327 + + A ++ T+ Q + +V+PPR G+ L Sbjct: 471 ELNKIDNCKLYAGNADDLITSLIRNANIQAGENLVAIVDPPRAGLHVRSITQLRNARGLN 530 Query: 328 FIIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +IY SC+ + K+ +L F +++ D+FPHT H E++ L ++ Sbjct: 531 RLIYVSCSPNSAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVLLFERE 588 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 152/396 (38%), Gaps = 43/396 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNK 58 QC + G C C Q++ K L++ LA + P++GP+ G+R + Sbjct: 74 QCKFF--GVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYR 131 Query: 59 AKMVVSGS--VEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V L+G R + D+ C + P + + L+ + R + Sbjct: 132 ARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSI----- 186 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I L Q ++LR L + I +QP Sbjct: 187 ---VQRMPQIELAVGQDVTALVLR-------NLEPITAEDEAELRAFADHHNIQFWLQPK 236 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + T L E + + +P F Q N + L + A + P Sbjct: 237 GPDTVYPFYPLDRTLTYTLPE--FGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGD 294 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQALDSTQFA 294 + DLFCG+G F L AT ++ GIE + A +A GL + F + + + Sbjct: 295 RLLDLFCGIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVS 354 Query: 295 T---AQGDVPELVLVNPPRRGIGKPLCDYLSTMA----------PRFIIYSSCNAQTMAK 341 A + L++PPR G + L+ ++ P+ IIY SCN T+A+ Sbjct: 355 ADDVAALGKFDRWLIDPPREGA-LAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLAR 413 Query: 342 DIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 D L G+R+ + +MFPHT+H E + + + Sbjct: 414 DAGLLVHEAGYRLAGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio RepID=A2BEG2_DANRE Length = 619 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 77/416 (18%), Positives = 145/416 (34%), Gaps = 57/416 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE--------------------------EWCAPV 48 P EQL K +++ +L E E P Sbjct: 196 PLWKVPYEEQLMMKEKEVEGVLQKLAREIGNNNKAMLPWLFVQKEKHNKMCCPLEAIRP- 254 Query: 49 SGPEQGFRNKAKM--VVSGSVEKPLLGML---HRDGT--PEDLCDCPLYPASFAPVFAAL 101 S + G+RNK + V E +G ++ G+ + + V Sbjct: 255 SPLQTGYRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPSETTNVCSEAKRVVQCF 314 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 + FI Y+ G + + + ++ M + F + +L + L + Sbjct: 315 QQFIRTTPYAVYSPETYEGHWRQLTVRTTRLKQTMAMVFFNPQKLQEKELEELKQNLGQY 374 Query: 162 LPQ-------LKVITVNIQPVHMAIMEGE-TEIYLTEQQALAERFNDVPLWIRPQSFFQT 213 + + + + + ++T ++ + E + I P SFFQT Sbjct: 375 FTEGEGKECAVTSLYFVRMGQRTSAGTEDLPCEHVTGEEWIHEELLGLKFRISPHSFFQT 434 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N A LY+ +W + + D+ CG G G+ A ++ GIE+ EA+ A+ Sbjct: 435 NTPAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEA 494 Query: 274 SAAELGLTRLQFQALDSTQFATAQGD----VPELVLVNPPRRGIGKPLCDYLSTM-APRF 328 +A GLT ++F + + +V+PPR G+ + + + Sbjct: 495 NAKANGLTNVEFHCGKAEDVFPTILNAVVSPNVTAIVDPPRAGLHSKVILAIRKAEHLKR 554 Query: 329 IIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 ++Y +CNA+ + +L FR + D+FP T H E + L + Sbjct: 555 LVYVACNAKAAMNNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILLFER 610 >UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S5B9_TRIAD Length = 556 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 147/396 (37%), Gaps = 38/396 (9%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVE------ 68 + +QL K +L +L + A +RNK + + + Sbjct: 163 PLWDKSYDQQLKIKKNNLDRILRK-CTSKLEAIKVPEINNYRNKCEFAIGQDSKDEVVIS 221 Query: 69 ---KPLLGML---HRDG--TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG 120 +G +R+G + DC P + A++ I ++ L Y+ G Sbjct: 222 VRAGIAVGFRLGSYREGNLSVVPPTDCANVPEEAKAIAKAMQSLIQQSSLPVYSFVDHTG 281 Query: 121 ELKYILLTESQSDGGMMLRFVLR----SDTKLAQLRKALPWLHEQLP-QLKVITVNIQPV 175 + I + + G +M L S+ +L L+ + E+ Q+ + + Q Sbjct: 282 YWRQICVRRNLL-GQLMAIVQLHPQDLSEDQLQSLKDEINRCLEKCDCQVVSVYLQKQTT 340 Query: 176 HMAIM-EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + G ++ + L E F + I P SFFQ N A LY RDW Sbjct: 341 RSSAGNAGSVYEIISGSKYLYEDFLGMKFRISPSSFFQGNTLAAEVLYRNIRDWCPTKAT 400 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA 294 + D+ CG G G+ A ++ GIE+ +AI A+ +A + ++F + Sbjct: 401 TVVLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFICGKAEDKL 460 Query: 295 TAQGDVPELV-----LVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL-- 346 D ++ +V+PPR G+ + L + +IY SCN + EL Sbjct: 461 PTLVDNLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYVSCNPAMAVTNFVELCS 520 Query: 347 --------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 F+I + D+FP+T E++ + Sbjct: 521 PRTNRLRGQPFKIMKALAVDLFPYTEQCELVLQFER 556 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 143/384 (37%), Gaps = 25/384 (6%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C Y G C C Q++ K + L E PV G +R++ Sbjct: 66 CPHY--GDCGGCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRT 123 Query: 60 KMVVSGSVEKPLLGML--HRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V S ++ R + C L P + + + NV Sbjct: 124 RLAVHTSANGKVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDM----VNVQP 179 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K G ++ + ++ + G + V + L AL + K + Q + Sbjct: 180 KVG-IRSVEISVGE--GVTAVNIVSQKRQPENVL-CALSGCLNRGAGGKTVWQVWQQIGN 235 Query: 178 AIMEGETEIYLTEQQALAERF--NDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A + + + L R + + + F Q N + + A A ++ P + Sbjct: 236 AKPQAVSPH---DAPPLVFRLPEFGLTMPFQLGDFTQINLPLNEIMVARAVRYLDPQPHE 292 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + DLFCG+G F L A ++ GIE ++ A +A GL QF + D Sbjct: 293 RIADLFCGLGNFTLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQFASADLFAATP 352 Query: 296 ---AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 A + +L++PPR G + + P+ I+Y SCN T+A+D L G+R Sbjct: 353 ETLAALGRFDKMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYR 412 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + ++FP T+H E + + + Sbjct: 413 FATAGMMNLFPQTSHVEAIGVFER 436 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 161/383 (42%), Gaps = 34/383 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADF--PVEEWCAPVSGPEQGFRNKAK 60 C ++ +C C Q+ K+ L +L++ + E P+ G E G+R +A+ Sbjct: 82 CKHFN--QCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRAR 139 Query: 61 MVVSGSVEKPLL--GMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + LL G + E++ DC + + LK + Sbjct: 140 ISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTF--------S 191 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 L ++ L G +M+ L L+ + + L L + Sbjct: 192 SLTSLGHVELVLGD-TGPVMV---------LRHLKPLVEKDEQALMTLMTLAKEEGATLY 241 Query: 178 AIMEGETEIYLTEQ-QALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ E + + L + +E V L P F Q N V Q+ A A +W+ + Sbjct: 242 SMPETDKLVRLVGDAPSYSET--GVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADER 299 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLFCG+G F L A + G+E E + A +AA L+ +F + + ++ Sbjct: 300 VLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSS 359 Query: 297 Q---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 Q + + VL++P R G + D +S + + ++Y SCN T+A+D L G+++ Sbjct: 360 QLWAKEKFDKVLLDPARAGAS-GIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQL 418 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 ++ + DMFPHT+H E + L +K Sbjct: 419 AKLGMLDMFPHTSHLESMALFIK 441 >UniRef50_UPI000186D10C HpaII tiny fragments locus 9c protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D10C Length = 587 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 80/414 (19%), Positives = 149/414 (35%), Gaps = 56/414 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEEW-----------------------CAPVSGP 51 + P +QL KT ++ LL + + P+ Sbjct: 170 PYWQIPYEKQLEKKTHLIEELLKQYGNKLVKVNPKVLNWWLLQKAKYNGLPCELFPIKYS 229 Query: 52 E--QGFRNKAKMVVSGSVEKP------LLGMLHRDGTPE-DLCDCPLYPASFAPVFAALK 102 + G+RNK + + + E LG + T + + P P + Sbjct: 230 DVINGYRNKCEFSIGINKENGEKTVGFRLGSYAQGSTSVAPVDNVPNVPQQMKDAAKIFQ 289 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRF-VLRSDTKLAQLRKALPWLHEQ 161 F+ + +N +G K + + +M+ ++ + A L + Sbjct: 290 KFVQNSEYDVFNYELNQGHWKQLTVRYGFRTKELMIIIGIVPQELTQADLSLIKNNILNY 349 Query: 162 LPQ-------LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 + +K + + + + +L + + E+ I PQ+FFQ N Sbjct: 350 FVEGEGKLCQVKSLYLQLMKKKRTQNDEVLYEHLFGETYITEKILGKTFRISPQAFFQIN 409 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 VA LY + + + D+ CG G G+ + ++ G+EI+SEAIA AK + Sbjct: 410 TNVAEILYDSIAELSELSKDVTLLDVCCGTGSIGICLSDKCGEVLGLEISSEAIADAKAN 469 Query: 275 AAELGLTRLQFQALDSTQ----FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFII 330 A G+ QF + + A + +V+PPR G+ PL + +I Sbjct: 470 AELNGVNNTQFFSGKAEDILNCVALKATKKEIIAVVDPPRAGL--PLIQIRKNKLIKKLI 527 Query: 331 YSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SC+ + K+ +L F + D+FPHT+H E++ + Sbjct: 528 YVSCDPKAAMKNFLDLGRAASKIYREEAFLPVKAIPVDLFPHTSHCELVIYFER 581 >UniRef50_C2D8K4 TrmA family RNA methyltransferase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8K4_9ACTN Length = 609 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 97/461 (21%), Positives = 157/461 (34%), Gaps = 98/461 (21%) Query: 11 CRSCQWIMQPIPEQLSAKTADLKNLLADF------PVEEWCAPVSGP-----------EQ 53 C C+W+ P EQL K ++ L + + + Sbjct: 58 C-GCEWLNIPYSEQLMRKNKYMRELFEPLVTQQGKSCADLLRSIVPMKCTKDRAPHNMPR 116 Query: 54 GFRNKAKMVVSGSVE--------------------KPLLGMLHRDGTPEDLCD-CPLYPA 92 FR+K + E G CD CP Sbjct: 117 CFRHKVATPFAPLPESFASRAPKSNSKVQTNARMSGIACGFFEPGTHHIIPCDFCPSEVP 176 Query: 93 SFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLR 152 + + AR + YN + G L++ +L S+S +ML V R+ AQ + Sbjct: 177 GARKILNFIAKDAARLNIKAYNENTQIGILRHAILRFSRSCNEIMLVIVTRTRN-FAQKK 235 Query: 153 KALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQ 212 + + P + + N+ P + M G + L + ++ I P SFFQ Sbjct: 236 LLVQDILSAYPHITTVVQNVNPKNTNAMLGSYNVVLFGSGKIHDKLLGCTFEIGPVSFFQ 295 Query: 213 TNPAVASQLYATARDWVR------------------------------------------ 230 TNP LY TA D ++ Sbjct: 296 TNPEQTEILYQTAIDGIKRICNTGKSDCDTLSYVSHGASIDSKRLDTSGLEHAHGKAQQV 355 Query: 231 -----QLPVKHMWDLFCGVGGFGLHCATPDMQ--LTGIEIASEAIACAKQSAAELGL-TR 282 + D +CG G G+ A+ + G + ++I AK++ L TR Sbjct: 356 TPEQADKHTIRIMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKNRRLNHLKTR 415 Query: 283 LQFQALDSTQFATAQGD------VPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 336 + D+T+F E ++++PPR G +++ P+ I Y SCN Sbjct: 416 CVYSCEDATRFMQDFAYASNGVSRFEAIIMDPPRAGSTPEFIKAAASLRPKCIAYISCNP 475 Query: 337 QTMAKDIREL--PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 QT +D+ E G+ +E + DMFPHT H E + LL +Q Sbjct: 476 QTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQ 516 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 146/392 (37%), Gaps = 38/392 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKN---LLADFPVEEWCAPVSGPEQGFRNK 58 +CA + G C C + Q++ K L++ LA E AP+ GP G+R + Sbjct: 92 KCAFF--GTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYR 149 Query: 59 AKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V L+G + + D+ C + P + + L+ + + Sbjct: 150 ARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSI----- 204 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 R + I L ++LR L + L + +QP Sbjct: 205 ---RDRMPQIELAVGSQVTALVLRV-------LEPINADDEALLRAFADEHKVQFWLQPK 254 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + + L E + + +P F Q N + L A + Sbjct: 255 GPDTVTPFYPLDVPLDYTLPE--FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDD 312 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQALDSTQF- 293 + DLFCG+G F L A ++ GIE + A +A E G+ F + + Sbjct: 313 RVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVT 372 Query: 294 --ATAQGDVPELVLVNPPRRGIGK--PLCDYLSTMA----PRFIIYSSCNAQTMAKDIRE 345 + L++PPR G ++ P+ I+Y SCN T+A+D Sbjct: 373 GDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGL 432 Query: 346 L---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+R++ + +MFP+T+H E + L + Sbjct: 433 LVHEAGYRLKGAGVVNMFPNTSHVESIALFER 464 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 145/384 (37%), Gaps = 31/384 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C +D +C C +QL+ K L + L ++ G+R KA Sbjct: 75 CPHFD--QCGGCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKA 132 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V + ++G R DL +C + + I Sbjct: 133 RLGVKYVQKKGRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEIIHSLE------- 185 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 R + I + + V R+ L+Q K + + +QP Sbjct: 186 -ARERIPQIEVACGDDR----VALVFRNLDPLSQSDKEK---LRNFGTQEGFDIYLQPGS 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + + ++ F DV + P F Q N V + A +W+ P H Sbjct: 238 NDSVHPLDKAHVAPLTYAHPSF-DVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDH 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ---F 293 + DLF G+G F L A ++T +E+ + QSAA G+T + + + Sbjct: 297 VLDLFAGLGNFTLPIARKAAKVTAVELDEHMVKRGAQSAAANGITNTEHVIGNLFEPDPT 356 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGFR 350 + VL++PPR G + + +++ AP I+Y SC+ ++A+D L G+R Sbjct: 357 HLWMQQTYDRVLLDPPRAGA-EAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYR 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT+H E + + + Sbjct: 416 LIAAGVMDMFPHTSHIESMAVFER 439 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 152/387 (39%), Gaps = 32/387 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C + G C C EQ+ K L++ L F E+W P+ + +R +A Sbjct: 90 CPHF--GICGGCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRA 147 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPED-LCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V ++ ++G + C + + + L+ + Sbjct: 148 RIGVRYIPRQDRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGL-------- 199 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + + ++ L + +++R L +L + Q + + +QP Sbjct: 200 MAKAHIGHVELAMGDHEVALLIR-------HLEELNVSDVNHLRQFALQRQWQLYLQPRG 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 + ++ + D+ P F Q N AV +++ A + ++ + Sbjct: 253 ADSLHRVDDVQAPMRLHYHLDDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGER 312 Query: 237 MWDLFCGVGGFGLHCATPD---MQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ- 292 + DLFCG+G F L A Q+ G+E + E + A ++A L + F + D T+ Sbjct: 313 VLDLFCGLGNFSLPLARCVGDTGQVIGVEASDEMVLRATENAKANSLNQAIFFSQDLTKD 372 Query: 293 --FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--G 348 + +L++PPR G + Y+ + I+Y SCN T+A+D L G Sbjct: 373 FSHHPWAKQGFDALLIDPPRSGAF-EVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHG 431 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 +++++ + DMF HT H E + L K Sbjct: 432 YQLKKAAVMDMFTHTEHVESIALFEKN 458 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 135/380 (35%), Gaps = 43/380 (11%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPEQGFRNK 58 +C Y +C C + +Q+ K L+ L + S +RN+ Sbjct: 64 KCKYYM--QCGGCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRNR 121 Query: 59 AKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + G + D+ C + + + LK N Sbjct: 122 VQFKF----DGKNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKN------NPQV 171 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + + + D ML+ VL + + L I V I Sbjct: 172 EELHIFH------HPDNKPMLKIVL-KENLFMNIENLLDTFA-------GIGVYI----- 212 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 G + L + R + SFFQ N + + + + Sbjct: 213 ----GNKRVKLEGKSFTFYRAGKFNYRVSIDSFFQVNKYQLENIVDEVISEI-PKDSQCI 267 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT-A 296 D++CGVG F L + ++ GIE + A+ A+ + + +F + A Sbjct: 268 GDIYCGVGLFTLPASKKAKKVFGIEASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSADII 327 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL-PGFRIERV 354 G P+ ++ +PPR GI K + L + + IIY SCN T ++DI L F +++V Sbjct: 328 FGYNPDTLIFDPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEKFELKKV 387 Query: 355 QLFDMFPHTAHYEVLTLLVK 374 +L DMFP T H E + +L K Sbjct: 388 KLIDMFPQTHHIESIFVLDK 407 >UniRef50_UPI0001792CAF PREDICTED: similar to RNA m5u methyltransferase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792CAF Length = 650 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 143/424 (33%), Gaps = 64/424 (15%) Query: 15 QWIMQPIPEQLSAKTADLKNLL-------ADF------------------PVEEWCAPVS 49 EQL KT +KN+L + + Sbjct: 226 PLYNISYDEQLIQKTNSIKNVLMDYSRRLKRIKCGQGILNWLKKQQDENNGLPCKLLEIQ 285 Query: 50 GPEQ------GFRNKAKMVVSGS--VEKPLLGML-----HRDGTPEDLCDCPLYPASFAP 96 + G+RNK + + ++P++G + + + P Sbjct: 286 SLKDDSEKCIGYRNKCEFTIGMDVENKEPVVGFRVGAYNQGKTSVAPIDNISNVPQRMKD 345 Query: 97 VFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP 156 V + + + ++ G + + + S +ML V+ ++ +L Sbjct: 346 VVKCFQDLVRASKFPVFDPENYTGHWRQLTVRLSLKTEQLMLICVVHTENMEESALNSLK 405 Query: 157 WL-HEQLPQLKVITVNIQP------VHMAIMEGETE--IYLTEQQALAERFNDVPLWIRP 207 L + + A EG + L Q + E + L I P Sbjct: 406 QLILSYFTEGAGAVCKVDSLYFQKAKKRAAGEGNSFPLELLHGQGYIVEEVKGLKLRISP 465 Query: 208 QSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEA 267 +SFFQ N A + L+ A+D + D+ CG G GL A Q+ G+EI EA Sbjct: 466 ESFFQINTAASEILFDAAKDLASINSQTTVLDVCCGSGTIGLSIAKDCAQVIGVEIQEEA 525 Query: 268 IACAKQSAAELGLTRLQFQALDSTQFATA------QGDVPELVLVNPPRRGIGKPLCDYL 321 + AK +A E G+T F A + + + + +V+PPR G+ L Sbjct: 526 VNMAKLNATENGITNAIFFAGKAEEVMNKREFQNPENANDVVAIVDPPRAGLHNKAILLL 585 Query: 322 STM-APRFIIYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLT 370 M + ++Y SCN + ++ L F + DMFP T H E++ Sbjct: 586 RRMTHLKRLVYMSCNPKGAMQNFLSLSMAESKTKQGAPFVPVKAVPVDMFPQTPHCELIV 645 Query: 371 LLVK 374 + Sbjct: 646 YFER 649 >UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAM4_9PROT Length = 363 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 153/388 (39%), Gaps = 40/388 (10%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M C+ + G+C SC P EQL K LK + + F + E + ++ FR +A+ Sbjct: 1 MNCSSF--GKCGSCVLWQVPYEEQLKMKKDKLKEMFSKFEIPE-IEVIYDKDEHFRARAE 57 Query: 61 MVVSGSVEKPLLGMLHRD---GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V +K M R + +C + + + L I + N+ Sbjct: 58 FRVWHEGDKTYYAMRKRKEEGRGVIPIEECKIVDKAIYELMPKLMSEIEKNQ----NLRL 113 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K E+ ++ S S G +++ + + + + L ++ + I Sbjct: 114 KLYEVHFL----SNSKGEVIVTLIYHRKVD-ESIAEDIKRLKDKFKNVDFI--------- 159 Query: 178 AIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + + Y+ ++ L E I +F Q N + ++ + D L Sbjct: 160 --VRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENTFTQPNREINKKMISWVLDNTSNLK 217 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + +L+CG G F + + ++ EI E+I A +A + F A+ + +F Sbjct: 218 GD-LVELYCGNGNFTIPLSENFRKVVATEINPESIEAATYNAEINNRKNISFLAMSAAEF 276 Query: 294 ATAQGDVPE------LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL- 346 + + VL++PPR G+ + +++ IIY SCN +T+ +D+ L Sbjct: 277 SELKKTGFFNSYDLKNVLIDPPRAGLDEKSRKFVNEF--DNIIYISCNPETLKRDLETLS 334 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 +I+ FD FP+T H E +L + Sbjct: 335 KNRKIKAFAFFDQFPYTNHMECGVVLER 362 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 150/383 (39%), Gaps = 34/383 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C Y G+C C EQ+ AK + + + L E P+SG +Q +R Sbjct: 90 CQYY--GQCGGCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSC 147 Query: 60 KMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ ++ P++G R + + +CP+ + LK ++ A Sbjct: 148 RIGINQLMRDGTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCK---- 203 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 E+ + L+ G M LR L ++L ++L + + Sbjct: 204 ----EITHAELSMGDQQGAMTLRI-------KKPLPESLSSSLQKLAEDNEFRLYFDNGQ 252 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 G+ + + + +P F Q N +V +Q+ A DW+ Sbjct: 253 QINAFGDEADLSYQLEKSETQIG-----FKPGDFIQVNASVNTQMINRAMDWLDLKDNDR 307 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---QF 293 + DLF GVG F L AT + G+E + + A+ +A + GL +F D + + Sbjct: 308 VLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKA 367 Query: 294 ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 +L++PPR G + L I+Y SCN +A+D EL G++ Sbjct: 368 LPWYKQGFSKILIDPPRTGA-LEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKA 426 Query: 352 ERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHT+H E L L K Sbjct: 427 SKFCVMDMFPHTSHVESLVLFEK 449 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 156/385 (40%), Gaps = 37/385 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV---SGPEQGFRNKA 59 C + +C C M P Q AK ++ L + AP+ S Q +R Sbjct: 81 CPAFK--QCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVC 138 Query: 60 KMVVSGSVEKP--LLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V K L+G + ++ CP+ A+ + + L+ I N Sbjct: 139 RLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALIVPLRTLI--------NEL 190 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ +I L E++S M+LR R K L + +Q Sbjct: 191 SSARDVGHIELYETESGLAMLLRHNGRPPVK-------DKELLLAFALQHDCALYLQTT- 242 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 L + + + + + L+ +P F Q NP V +L R+W+ + Sbjct: 243 ------GYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDN 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT- 295 + DLFCG+G F L A +TGIE E + A +A + L F D T+ A Sbjct: 297 VLDLFCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEY 356 Query: 296 ----AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP-GFR 350 Q +LVL++P R G + + +L+ R I+Y SCN T A+D L G+ Sbjct: 357 ANAGWQQQCYDLVLLDPGRTGA-EAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYT 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 +++ L DMFPHT H E L L ++ Sbjct: 416 LKQWGLLDMFPHTGHVESLFLFERK 440 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKA 59 CA Y C CQ QL K + + + P+ G+R++A Sbjct: 115 CAHYAT--CGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRA 172 Query: 60 KMVVSGSVEKPLLGMLH--RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ V + + + T ++ C + + + L+ ++ Sbjct: 173 RLGVWYEADSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQA--------RV 224 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 + +I L +QS +++R + +A R+AL L ++ + + + Sbjct: 225 ANKAVTHIELVAAQSGPAVIVR---HTKPLVALQRQALAELAQR--ESCQVWLEPNGNQG 279 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 + + L +PL PQ F Q NPAV ++ A + + + Sbjct: 280 LTDLEGSPV----DPHLVLDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLV 335 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFA--- 294 D FCG+G F L A+ ++ G+E+ + A+ +A LGL L+F D +Q Sbjct: 336 LDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPR 395 Query: 295 -TAQGDVPELVLVNPPRRGIGKPL-----CDYLSTMAPRFIIYSSCNAQTMAKDIREL-- 346 +L++PPR G + + ++ + I+Y SCN T+A+D L Sbjct: 396 LRQLCSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAE 455 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLL 372 G+ ++ + + DMFPHT+H E + L Sbjct: 456 AGYGLDALGVMDMFPHTSHVESMALF 481 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 146/382 (38%), Gaps = 31/382 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLL-ADFPVE-EWCAPVSGPE--QGFRNK 58 C + G+C CQW+ P EQ K ++ L V+ E P+ G+R++ Sbjct: 73 CPAF--GQCGGCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRSR 130 Query: 59 AKMVVSGSVEKPLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 ++ + + L+G R + CP+ L+ +I + + Sbjct: 131 VQLKCLNTPKGFLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRWSQF---- 186 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLH-EQLPQLKVITVNIQPVH 176 + I L + + L +D + + L L + V H Sbjct: 187 ----VSQIDLAVDDQERVRAVVHCLAND-----VDDFVTHLKPGALSANMGLFVQTGRKH 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 L E R P F Q N + + P Sbjct: 238 NLQHVCGPVELLIEVDTPELRLG-----YGPGGFAQINLPQNRAMVREVVGTLVSNPPGR 292 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLFCG+G F L A ++ G+E ++I A+ +A + + F A ++ AT Sbjct: 293 VLDLFCGMGNFSLPVARLAQEVVGVEAYLQSIEMARLNARLNEIENVSFFAREAYGAATE 352 Query: 297 QG--DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIE 352 G +LV+++PPR G + L T+ P I+Y SC+ T+ +D+ L G+R+ Sbjct: 353 YGADGAIDLVIMDPPRSGA-YDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLV 411 Query: 353 RVQLFDMFPHTAHYEVLTLLVK 374 + FD+FPHT H E +T L + Sbjct: 412 WSRPFDLFPHTHHTESITFLER 433 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 291 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 157/384 (40%), Gaps = 39/384 (10%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNKA 59 C AGRC C P EQL+ K L L+ EEW AP++GPE G+R +A Sbjct: 91 CQH--AGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRA 148 Query: 60 KMVVSGS--VEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ V +K +G + +CP+ P+ L + R Sbjct: 149 RIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLSKPQ---- 204 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 L ++ L S ++ S+ L L+ + QL Sbjct: 205 ----ALGHVELFSGSSLAVLLRHMAPLSEADLTILKDFCAFHEAQL-------------- 246 Query: 177 MAIMEGETEIYLTEQQALAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPV 234 + + + Q+L D+ L RP F Q N V + A A +W++ Sbjct: 247 -WLHGEGEPQPVDDAQSLGYHLEQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTAD 305 Query: 235 KHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-- 292 + + DLFCG+G F L A ++ +E + A +AA L +F D +Q Sbjct: 306 ERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPL 365 Query: 293 -FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGF 349 A G+ VL++PPR G + L+ + + ++Y SCN T+A+D EL G+ Sbjct: 366 TDAEWIGNGFSAVLLDPPRDGAF-EVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGY 424 Query: 350 RIERVQLFDMFPHTAHYEVLTLLV 373 R++R + DMFP TAH E + L Sbjct: 425 RLKRAGILDMFPQTAHVEAMALFE 448 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 291 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 133/380 (35%), Gaps = 71/380 (18%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGP-EQGFRN 57 +C + G C C + QL K +++LL+ + + P E +RN Sbjct: 87 KCPYF--GVCGGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSPREYYYRN 144 Query: 58 KAKMVVSGSVEKPLLGMLH-RDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ + + LG R + + CP+ V ++ GL NV Sbjct: 145 SARFLCGQQGD---LGFTDWRSNSFIKVDTCPIMDEKINEVLQHIQG----HGLPGENVR 197 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 + S+ +++ L D + Sbjct: 198 ----------VRYSRQKDELVIWPKLSVDLET---------------------------- 219 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 QQ + + SFFQ N A L A D + L K Sbjct: 220 -------------GQQFHTQVLLGREFRVSATSFFQVNTLQAENLIRIALDELEPLEGKT 266 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + D +CGVG F A GIE + A A + + L + + + Sbjct: 267 VVDAYCGVGTFTRFIAERAELTIGIEESPSATADFRYNMQGLK---AKLIEGRAEKELGR 323 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP---GFRIER 353 + + +L++PPR G + + +AP I+Y SC+ T+A+D++ L +R+++ Sbjct: 324 LPNNIDRLLLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKK 383 Query: 354 VQLFDMFPHTAHYEVLTLLV 373 VQ DMFP T H E + L Sbjct: 384 VQPVDMFPQTFHIETIASLE 403 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 149/386 (38%), Gaps = 34/386 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGPEQGFRNKA 59 C + G C C +QL+ K ++ L E W AP+ P G+R KA Sbjct: 78 CIHF--GVCGGCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKA 135 Query: 60 KMVV---SGSVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 ++ V +G ++ L+G T DL C + L I L+ ++ Sbjct: 136 RLAVKYVAGKDDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIR--CLSIFDR 193 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I + + V R+ L + V QP Sbjct: 194 ------VPQIEVAAGDQ----AVGLVFRNLAPFTVEDY---RLLSAFARQYDFYVYEQPG 240 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 A + AL + V ++ P F Q NPAV L A + P Sbjct: 241 DKASVRPIWPRAPQLSYALPDHA--VSVFFEPTDFTQVNPAVNHALVERAIALLALQPQD 298 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDS----T 291 + DL+CG+G F A + G+E + A+++AA +T + FQ D Sbjct: 299 RVLDLYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIA 358 Query: 292 QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PG 348 + A Q D VL++PPR G + ++ + I+Y SC T+A+D L G Sbjct: 359 ELAHLQRDGVSRVLLDPPRSGAA-EVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYG 417 Query: 349 FRIERVQLFDMFPHTAHYEVLTLLVK 374 +R+ + DMFPHTAH E +TL V+ Sbjct: 418 YRLAAAGVMDMFPHTAHVECITLFVR 443 >UniRef50_UPI00016949AC RNA methyltransferase, TrmA family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016949AC Length = 406 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 126/284 (44%), Gaps = 9/284 (3%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE---WCAPVSGP--EQGFRN 57 C ++D +C CQ QL+AK ++ + + P+ G +RN Sbjct: 126 CPVFD--QCGGCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRN 183 Query: 58 KAKMVVSGSVEKPLLGMLHRDGTP-EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 KA++ + + G+ D+ C + V +K ++ + YN Sbjct: 184 KAQLQTEVRDSRVITGLYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNEK 243 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 ++ G L+ I+ ++S G + L + + L + K + +H+++P++ I N+ P Sbjct: 244 KRSGVLRTIVARVARSTGKVQLTLITATPF-LPKHEKLVSAVHQRMPEVAEIAHNVNPDD 302 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 ++ GE ++L+ + L E + + P++FFQ NP+ LY ++ + Sbjct: 303 TPLVFGERTVHLSGEDRLEETLGPLRFELSPRAFFQLNPSQTVHLYDYVKEAAALTGDEL 362 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGL 280 + D +CG G GL A ++ GIEI +A+ A+++A GL Sbjct: 363 VVDAYCGTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGL 406 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 152/384 (39%), Gaps = 34/384 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLAD--FPVEEWCAPVSGPEQGFRNKAK 60 C + RC C Q++ K L + L E +S P+ G+R +A+ Sbjct: 78 CKHFP--RCGGCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRRRAR 135 Query: 61 MVVSGSVEKPLLGMLHRDGT--PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 118 + V + + ++ G+ E + +C + + AAL ++ Sbjct: 136 LAVQRAKDGQIIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPS-------- 187 Query: 119 RGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMA 178 ++ + +D + + ++ L L QL + Sbjct: 188 --GIRLSEIELLSADNAVAIAIEASRVPSASEREAMLAELTFTDAQLW--WKTEKQTAFK 243 Query: 179 IMEGETEIYLTEQQALAERFND-VPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++G QAL ND + L + P F Q N + Q+ D VR + Sbjct: 244 RIDG-------GDQALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERA 296 Query: 238 ---WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF- 293 DLFCG G F L A ++ GIE SE + A+++A ++ +F D + + Sbjct: 297 SVAVDLFCGSGNFSLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWT 356 Query: 294 -ATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 +LVL++PPR G + ++ + ++Y SC+ TM +D++ L G++ Sbjct: 357 GMRKIKGKVDLVLLDPPRSGAA-GVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYK 415 Query: 351 IERVQLFDMFPHTAHYEVLTLLVK 374 + + DMFPHTAH E + LL K Sbjct: 416 MIAAGVMDMFPHTAHVEAIALLEK 439 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 148/394 (37%), Gaps = 46/394 (11%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP----VEEWCAPV-SGPEQGFRN 57 C + CR C Q+ K L N L E P+ + +G+RN Sbjct: 79 CDHFQ--ICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRN 136 Query: 58 KAKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 KA++ V K L+G R+G D+ C + + FI L+ Y Sbjct: 137 KARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIET--LSIYQ 194 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 + + + + M++ R P+ +E L +L+ Sbjct: 195 ------HIAQLEIAIDDTRPAMIV-------------RHLEPFTNEDLEKLRSFAQENNY 235 Query: 175 VHMAIMEGETEIY-LTEQQALAER------FNDVPLWIRPQSFFQTNPAVASQLYATARD 227 +G I+ L Q + + + + P F Q N + ++ A + Sbjct: 236 WIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIE 295 Query: 228 WVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQA 287 + + DLFCG+G F L + + G+E + AK++A +T + F A Sbjct: 296 LLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYA 355 Query: 288 LDSTQFATAQ----GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDI 343 + + + +L++PPR G + +C+ + + I+Y SC+ +A+D Sbjct: 356 ANLFESFEDKEWFNNFEYNKMLLDPPRAGA-QEVCNNIEKFNVKRIVYVSCDTAALARDA 414 Query: 344 REL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 L G+++ + DMFPHT H E + + K Sbjct: 415 GILVNTKGYKLISAGVMDMFPHTMHVESIAVFEK 448 >UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PPI6_IXOSC Length = 494 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 80/407 (19%), Positives = 149/407 (36%), Gaps = 56/407 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVEE----------------------WCAPVSGPE 52 W P +QL K ++ +L + + P+ Sbjct: 78 AWWDTPYEQQLQQKQDLVRKVLVKYARKLEATNPALRPWLKQQREAHGGCCPVLPIRASP 137 Query: 53 --QGFRNKAKMVVSGS--VEKPLLGML---HRDGT--PEDLCDCPLYPASFAPVFAALKP 103 +G+RNK + V + +G +R G+ P PAS V + Sbjct: 138 VTEGYRNKNEFSVGRHLATGEATVGFRLSSYRQGSMSVAPPDALPNVPASAKAVTRCFQE 197 Query: 104 FIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLR----SDTKLAQLRKALPWLH 159 ++ ++G P++ G + + + S +G +M V+ ++ ++ + ++ L Sbjct: 198 YVRQSGKEPFDPESHGGYWRQLTVRTS-CEGHVMAIVVIHPQGLTEAEITEEKRKLREFF 256 Query: 160 EQLPQ----LKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNP 215 E P + + + E +L L ER + + P +FFQ N Sbjct: 257 ESGPGQVCGVTSLYLQRFDKKRPEGEQAEFEHLFGTTELEERVRGLSFRVGPDAFFQVNT 316 Query: 216 AVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSA 275 A L A D P + D+ CG G GL A ++ G+E+ A+ AK++A Sbjct: 317 PAAEVLLEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARVYGVEVCKRAVENAKRNA 376 Query: 276 AELGLTRLQFQALDSTQ-----FATAQGDVPELVLVNPPRRGIGKPLCDYLST-MAPRFI 329 G+ F + T + + +V+PPR+G+ + L + + + Sbjct: 377 EANGIGNASFVLGRAEDTMHDVMHTLRDSEDMVAVVDPPRQGLHNKVLRALRATASIKRL 436 Query: 330 IYSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHY 366 +Y SCN + ++ +L F + + DMFPHT H Sbjct: 437 VYISCNPEGALQNFLDLARPASNNYRGQPFVVVKAAPVDMFPHTPHC 483 >UniRef50_B6WVF6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVF6_9DELT Length = 511 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 93/443 (20%), Positives = 158/443 (35%), Gaps = 72/443 (16%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEE-----WCAPVSGPEQ--GF 55 C C C W P QL K +++ L P G + F Sbjct: 70 CPH--GEDCGGCPWQRLPYAAQLRWKGQLVRDALERIGGLGRDAALPLRPALGSPEQRAF 127 Query: 56 RNKAKMVVSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 RNK + + LG+ R G + C L P + A AR+GL Y Sbjct: 128 RNKMEFAFGPADGSLCLGLRRRGGLQVLPVPGCALLPGEGLELVTACAGLAARSGLPAYV 187 Query: 115 V----------------------------ARKRGELKYILLTESQSDGG----------- 135 A RG +++++ D Sbjct: 188 PPRSAAEEGRLRPRADKGRGRRPRRERPGAEDRGFWRFLVVRYGWPDPDPAQVAASDAPG 247 Query: 136 --MMLRFVLRSDTKLAQ--LRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQ 191 L V T + + + L + P ++ + A++ GE + ++ Sbjct: 248 RRWWLTCVTSPGTAEQRRTVARMGRELLDAFPCVQAFVHEERATPDALVAGERRVLCLDR 307 Query: 192 Q---------ALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK----HMW 238 + L + P SFFQ N A L ATA + + L + Sbjct: 308 RGEALPDDGAPLYLPLGGRWFGLDPASFFQVNSRAAELLAATAVEMLLSLRPDATPRRLL 367 Query: 239 DLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQ- 297 D++CG G GL A ++ G+E A+ A+++A G +++ D+ + TA Sbjct: 368 DVYCGAGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCRYEVGDAARLLTALA 427 Query: 298 ----GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352 + L++PPR G+ + L +AP ++Y SCN T+A+D R L + + Sbjct: 428 REHGPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATLARDARALSADYELM 487 Query: 353 RVQLFDMFPHTAHYEVLTLLVKQ 375 +V D+FPH+ H E ++ ++ Sbjct: 488 QVTPLDLFPHSPHVESVSCWQRR 510 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 144/389 (37%), Gaps = 38/389 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C + G C C +Q+ AK L + L + + G G+R K Sbjct: 79 RCPHF--GVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRK 136 Query: 59 AKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + V +K L+G D DL C L + Sbjct: 137 GRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD------ 190 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + ++ I V + L L + Q + +QP Sbjct: 191 --GKRDIPQIEFIAGDDA-------VALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPG 241 Query: 176 HMAIMEGETEIYLTEQQA-LAERFN--DVPLWIRPQSFFQTNPAVASQLYATARDWVRQL 232 + + L Q+ L+ R DV L RP F Q N ++ ++ A A + Sbjct: 242 GVDSV-----HPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAK 296 Query: 233 PVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST- 291 P + DLFCG+G F L A ++ G+E + +A A+++A GL QF A D T Sbjct: 297 PDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQ 356 Query: 292 --QFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--- 346 + + +L++PPR G + L + I+Y SC+ ++A+D L Sbjct: 357 DQRQTAWMRQGFDKLLLDPPRSGAI-DVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNE 415 Query: 347 PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 GF + DMFPHTAH E + + K+ Sbjct: 416 QGFSLLSAGAMDMFPHTAHVESIAVFEKR 444 >UniRef50_Q8IZ69 tRNA (uracil-5-)-methyltransferase homolog A n=42 Tax=Euteleostomi RepID=TRM2A_HUMAN Length = 625 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 81/416 (19%), Positives = 142/416 (34%), Gaps = 57/416 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE--------------------------EWCAPV 48 P EQL K + + +L E E P Sbjct: 174 PLWTVPYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRP- 232 Query: 49 SGPEQGFRNKAKM--VVSGSVEKPLLG---MLHRDGT--PEDLCDCPLYPASFAPVFAAL 101 S + +RNK + V E +G ++ GT D P + V A Sbjct: 233 SPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAF 292 Query: 102 KPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQ 161 + FI + Y+ G K + + S+ M + + +L + L + Sbjct: 293 QEFIRSTPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLAQH 352 Query: 162 L-------PQLKVIT-VNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQT 213 + + V EG ++ + + E + I P +FFQ Sbjct: 353 FTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQV 412 Query: 214 NPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQ 273 N A LY +DW + + D+ CG G GL A ++ G+E+ EA+ A+ Sbjct: 413 NTPAAEVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARV 472 Query: 274 SAAELGLTRLQFQALDSTQFAT----AQGDVPELVLVNPPRRGIGKPLCDYLSTMA-PRF 328 +A + L+ ++F + + +++PPR G+ + + R Sbjct: 473 NAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIRRAKNLRR 532 Query: 329 IIYSSCNAQTMAKDIRELP----------GFRIERVQLFDMFPHTAHYEVLTLLVK 374 ++Y SCN + + +L FR + D+FP T H E+L L + Sbjct: 533 LLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFER 588 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 152/384 (39%), Gaps = 35/384 (9%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVE--EWCAPVSGPEQGFRNKA 59 +C A RC CQ P+ Q AK L L E E+ + G G+R + Sbjct: 81 KCQY--ASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRV 138 Query: 60 KMV--VSGSVEKPLLGMLHRDG-TPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 ++ G +++ +G ++ + C + + + + L ++R Sbjct: 139 RLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFSQPK---- 194 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 L +I L + + M+LR+ + L + L + + + +Q Sbjct: 195 ----NLGHIELVAADNGVAMLLRYSGK-------LTENDRTLLLDFAVREELMLFLQDD- 242 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 E + Q + +++ L + F Q N + ++ A DW+ H Sbjct: 243 ------EKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDH 296 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 + DLFCG+G F L + GIE S + AK +A +QF D Q Sbjct: 297 VLDLFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFAD 356 Query: 297 QG---DVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRI 351 + + +L++PPR G + L + I+Y SCN T+ +D L +R+ Sbjct: 357 EVWATEPFNKILLDPPRTGAA-FALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRV 415 Query: 352 ERVQLFDMFPHTAHYEVLTLLVKQ 375 ++V + DMFPHT H E +TL KQ Sbjct: 416 KKVAMIDMFPHTGHLESITLFEKQ 439 >UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexaceae RepID=A5V044_ROSS1 Length = 407 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 155/383 (40%), Gaps = 16/383 (4%) Query: 2 QCALYDA-GRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPV----SGPEQGFR 56 +C G+C C + + P Q++AK L++L E + S +R Sbjct: 25 RCLHAPPTGQCGGCAFQDREYPVQVAAKRTALRHLWEGDLPETLLTTLDVVASPNPFAYR 84 Query: 57 NKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 + V S DL +C L PA A+ R GL Y++ Sbjct: 85 TRMDFVASKERFGLRRSGRF--NYIIDLKECHLIPARAFAAARAMYDHAMRLGLPDYDLR 142 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTK---LAQLRKALPWLHEQLPQLKVITVNIQ 173 G L+Y+ + S D ++L + + + A + + + + + I Sbjct: 143 AHAGFLRYVAVRRSP-DDEVLLALITAAPDEAGTYAGKVEQVAQAALEYDGVVGVHWLIN 201 Query: 174 PVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 P I GET + + L R L I P +FFQ N + L RD V Sbjct: 202 PTRTDISFGETARF-WGRATLPMRVGAHTLDIGPNTFFQNNVWLLMPLLEAVRDAVAGEG 260 Query: 234 VKH--MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST 291 + + DL+ GVG L A Q+ +E E++ A+++ A G + D Sbjct: 261 ERARALADLYGGVGTIALFVADLADQIVCVESVEESVRLARENIARAGFEHIAIVKADVA 320 Query: 292 QFATAQ-GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGF 349 + ++V+ +PPR G+G +C L + P+ I+Y SCN T D+R L + Sbjct: 321 DALRERTRGAFDIVIADPPRTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAY 380 Query: 350 RIERVQLFDMFPHTAHYEVLTLL 372 R+ ++ +DMFPHT H E L +L Sbjct: 381 RLTSLRGYDMFPHTPHLESLAVL 403 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 84/379 (22%), Positives = 144/379 (37%), Gaps = 34/379 (8%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCA----PVSGPEQGFRNK 58 C Y G C CQ EQL +K L L + S E +R + Sbjct: 70 CPYY--GECGGCQIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKEFNYRVR 127 Query: 59 AKMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 + + + +G D D+ +C L + ++ + Sbjct: 128 VQFKIQEN----RVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIK-------- 175 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 +L+ + + S + L+FV + T L+ L + LP+ V + V Sbjct: 176 ---DLQEVHVNYSPTRDEATLKFVTITHTDEKLLQNILENV---LPEWVVGIGDYGKVGN 229 Query: 178 AIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHM 237 ++++ Y ++ + + SFFQ N + D+ Sbjct: 230 SLVK----RYKVGREHIFMDVGKWQYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKG-- 283 Query: 238 WDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQ-FATA 296 DL CGVG F + + + G + AI A+ +A + F+ + + Sbjct: 284 LDLHCGVGFFTIPLSEQGNFIEGADANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRR 343 Query: 297 QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERV 354 G+V LV+V+PPR G+ + D L P I+Y SCN T A+D++ L G+ ++R+ Sbjct: 344 IGEVINLVVVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRL 403 Query: 355 QLFDMFPHTAHYEVLTLLV 373 +L D FP T H E + LL Sbjct: 404 KLIDNFPQTYHIESIALLE 422 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 144/382 (37%), Gaps = 26/382 (6%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 QC ++ RC C Q++ K ++ L ++ P+ G + +R++ Sbjct: 69 QCRYFE--RCGGCSLQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHYRDR 126 Query: 59 AKMVVSGSVE-KPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVA 116 A+ VS + LG + D+ C L P + A++ + Sbjct: 127 ARFSVSLDKLCRLKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQDLAEEGSVAR 186 Query: 117 RKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVH 176 S+ +L +S + + + W +L + + I+ Sbjct: 187 FAEFY------RGSEIT---VLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGV 237 Query: 177 MAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKH 236 +T+ L + L E + + RP F Q N + + A + + Sbjct: 238 SQPFYPKTDKTL--KYTLPE--FGIEMPFRPGDFTQINTDTNRLMVSRAVKMLDIRQGER 293 Query: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLT-RLQFQAL---DSTQ 292 + DLFCG+G F L + GIE A + A Q+A G + F A D T+ Sbjct: 294 IADLFCGLGNFSLPMVKSGADVVGIEGAENLVRRAWQNARLNGCDGQTDFIAANLFDCTE 353 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFR 350 A + +L++PPR G + + + P+ I+Y SCN T+A+D L G+ Sbjct: 354 KTVASWGRFDKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYI 413 Query: 351 IERVQLFDMFPHTAHYEVLTLL 372 + + +MF T+H E + + Sbjct: 414 LSGAGIMNMFAQTSHTESVAVF 435 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 89/385 (23%), Positives = 144/385 (37%), Gaps = 32/385 (8%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 +C + G C C +Q+ AK L + L + +SG G+R K Sbjct: 103 RCPHF--GVCAGCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPALSGASWGYRRK 160 Query: 59 AKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 + V +K L+G +D DL C AAL + R Sbjct: 161 GRFSVRRVEKKDKTLVGFREQDPRFVADLSVCHTVIPQVGLKVAALAELVERLD------ 214 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + ++ I + V + + L + Q + +QP Sbjct: 215 --AKRDIPQIEFIAGDAT-------VALTFRHMQPLSEHDQDALIAFAQAHDFAIFLQPA 265 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 + + L + DV L RP F Q N + Q+ A A + Sbjct: 266 GVDSVHPLYPQAAPLSFRLPQW--DVELAFRPLDFIQVNAVLNQQMIAHALALLDAQSGD 323 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDST---Q 292 + DLFCG+G F L A ++ G+E + + A+++A GL QF A D T + Sbjct: 324 RVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVTRARENAQRNGLDNAQFFAADLTQDQR 383 Query: 293 FATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL---PGF 349 A + +L++PPR G + L + I+Y SC+ ++A+D L GF Sbjct: 384 QAPWMRQGFDKLLLDPPRSGA-LEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGF 442 Query: 350 RIERVQLFDMFPHTAHYEVLTLLVK 374 ++ DMFPHTAH E + + + Sbjct: 443 VLKAAGAMDMFPHTAHVESIAVFER 467 >UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nautilia profundicola AmH RepID=TRMA_NAUPA Length = 365 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 42/391 (10%) Query: 1 MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK 60 M C+ + G+C SC P EQL K+ LK + ++F + E V G ++ FR +A+ Sbjct: 1 MTCSSF--GKCGSCVLWEMPYDEQLKMKSEKLKEMFSEFDMPE-IEVVHGSDEHFRARAE 57 Query: 61 MVVSGSVEKPLLGMLHRD---GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117 V +K M R + +C + + + L I + N+ Sbjct: 58 FRVWHEGDKSYYAMRKRKEDGRGVIPIEECKIVDKAIYDIMTPLLKEIEKND----NLRF 113 Query: 118 KRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHM 177 K E+ ++ S S G +++ + + + + L E+ I Sbjct: 114 KLYEIDFL----SNSKGELIITLIYHKKVD-ESIAEDIKKLKEKFKNADFI--------- 159 Query: 178 AIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVRQLP 233 + + Y+ ++ L E N I +F Q N + ++ A L Sbjct: 160 --VRKKGRKYVFDKNYLIEELNINSKTYKYKIIENTFSQPNRQMNQKMIEWAMRNSEDLK 217 Query: 234 VKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQF 293 + +L+CG G F + + ++ EI+ E+I A +A + F A+ + +F Sbjct: 218 GD-LVELYCGNGNFTIPLSERFNKVIATEISKESIEAATYNAEINARDNITFLAMSAAEF 276 Query: 294 ATAQGDVPEL--------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 + D L +L++PPR G+ ++++ IIY SCN +T+ +D++ Sbjct: 277 SKLYKDRSPLITKYDLKNILIDPPRAGLDDKSREFVNEF--DNIIYISCNPETLQRDLKT 334 Query: 346 L-PGFRIERVQLFDMFPHTAHYEVLTLLVKQ 375 L G I+ FD FP+T H E +L K Sbjct: 335 LAKGREIKAFAFFDQFPYTNHAECGVILKKN 365 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 141/390 (36%), Gaps = 41/390 (10%) Query: 2 QCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFP---VEEWCAPVSGPEQGFRNK 58 QC ++ +C C QL K L N L APV G+R + Sbjct: 76 QCPHFN--QCGGCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRR 133 Query: 59 AKMVVSGSVEKP--LLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 A++ V +K L+G ++G + C + L+ I ++ Sbjct: 134 ARLGVKYVAKKQAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQSLN--AFHD 191 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + I + +L V R L + + + + +QP Sbjct: 192 ------IPQIEVALGDE----ILGLVFRHLVPLNNSDVLA---LKNFAKKYSVQLYLQPG 238 Query: 176 HMAIMEGETEIYLTEQQA--LAERFND-----VPLWIRPQSFFQTNPAVASQLYATARDW 228 + +T + + L+ R + + + P F Q N + + A + Sbjct: 239 N-----EKTTHCIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQAMIQHAIEL 293 Query: 229 VRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQAL 288 + + DLFCG+G F L A + GIE S + AK +A + QF Sbjct: 294 LSPHFSDRILDLFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAINNTQFYTA 353 Query: 289 DSTQFATAQ---GDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRE 345 D T + +L++PPR G + ++ ++Y SCN T+A+D E Sbjct: 354 DLTGSILKEVWAQQTFNKILLDPPRSGA-LEVIQQIARWKVEKMVYISCNPATLARDSEE 412 Query: 346 L--PGFRIERVQLFDMFPHTAHYEVLTLLV 373 L G+ +ER + DMFP T H E + L Sbjct: 413 LIKQGYHLERAGIMDMFPQTHHSEAICLFT 442 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 89/418 (21%), Positives = 148/418 (35%), Gaps = 67/418 (16%) Query: 3 CALY--DAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPV---EEWCAPVSGPEQGFRN 57 C + AG C C+ + Q++ K L++ L E P+ GP G+R Sbjct: 94 CPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRY 153 Query: 58 KAKMVVSG--SVEKPLLGMLHRDGTPE-DLCDCPLYPASFAPVFAALKPFIARAGLTPYN 114 +A++ V K L+G R D+ CP+ P + + L+ IA Sbjct: 154 RARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMD----- 208 Query: 115 VARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQP 174 R I L ++LR L L +A + +QP Sbjct: 209 ---ARDTCPQIELACGDDVTALVLR-------HLEPLSEADLGRLRSFAAAHGVQWWLQP 258 Query: 175 VHMAIMEGETEIYLTEQQALAERFN----DVPLWIRPQSFFQTNPAVASQLYATARDWVR 230 G ++L ++ + + + +P F Q NP + L A + Sbjct: 259 K------GPDTVHLLDEGGPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLD 312 Query: 231 QLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELG--------LTR 282 + D FCG+G F L AT ++ GIE + +A ++++ + L Sbjct: 313 AGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAP 372 Query: 283 LQFQALDSTQFATAQGDVP---ELVLVNPPRRGIG--KPLCDYLSTMA------------ 325 F A + + + LV+PPR G + Sbjct: 373 ATFVARNLFEMTPEMLIADGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPAS 432 Query: 326 ------PRFIIYSSCNAQTMAKDIREL---PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 P+ I+Y SCN T+A+D L G+R + +MFPHTAH E + + + Sbjct: 433 AEGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 490 >UniRef50_UPI0000D56BDA PREDICTED: similar to CG3808 CG3808-PA n=3 Tax=Endopterygota RepID=UPI0000D56BDA Length = 586 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 77/414 (18%), Positives = 138/414 (33%), Gaps = 56/414 (13%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE---------EWC----APVSGPE--------- 52 P EQL K + +N+L E EW G Sbjct: 163 PLWDVPYEEQLKTKQEEARNILKRLGNELARQNPDLREWLNKQKEKFDGLPCELLNIRYA 222 Query: 53 ---QGFRNKAKMVVSGSVEKPLLGMLHRDGTPED-------LCDCPLYPASFAPVFAALK 102 G+RNK V E L + R G+ + + P S + Sbjct: 223 DECDGYRNKCSFTVGIDEETKLPTVGFRIGSYVNGITGVGSIESLKHIPESMKLAVKLFQ 282 Query: 103 PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALP------ 156 ++ + L +N G + + + +Q +ML + + K Sbjct: 283 DYVRASDLQVFNFEVHTGHFRQLTIRTAQ--DQIMLVVGIHPQDLSEEKLKVFKNSLIHY 340 Query: 157 --WLHEQLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTN 214 + ++ + +A + + +L + E + I P++FFQ N Sbjct: 341 FTEGAGKEAKITSLYYQKIVKKIAGEDSDGSEHLWGDTHICETLLGLKFKISPEAFFQIN 400 Query: 215 PAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQS 274 A LY + + + D+ CG G GL A ++ GIEI +AI AK + Sbjct: 401 TKGAEILYKSIIELASPTEDSTVLDVCCGTGTIGLCFAKNCKKVLGIEIVPQAIIDAKAN 460 Query: 275 AAELGLTRLQFQALDSTQFATAQGDVPE---LVLVNPPRRGIGKPLCDYLSTM-APRFII 330 A + +F + + + + +V+PPR G+ + + + ++ Sbjct: 461 AKLNEIENSEFFEGKAEEILGSVCYRAMGDVVAVVDPPRAGLQQKAVVQIRKINKIGQLV 520 Query: 331 YSSCNAQTMAKDIREL----------PGFRIERVQLFDMFPHTAHYEVLTLLVK 374 Y SCN K+ ++ R + DMFPHT H E++ + Sbjct: 521 YVSCNPAAALKNFIDIGRPASKTLHNEPLVPVRAVVVDMFPHTRHCELIISFKR 574 >UniRef50_A2ELU0 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2ELU0_TRIVA Length = 534 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 144/385 (37%), Gaps = 24/385 (6%) Query: 15 QWIMQPIPEQLSAKTADLKNLLADFPVE---EWCAPVSGPEQGFRNKAKMVVSGSVEKPL 71 W P+ EQ +AK+ L+ E +RNK +M V +E Sbjct: 150 AWHRMPLEEQYAAKSEKYTKLIQGIVPEGSSPVTVVPVPNTVNYRNKVEMTVGADLEGNT 209 Query: 72 LGMLHRDGTPED----LCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILL 127 + + ED + +C P + F+ A Y+ +R G K+I + Sbjct: 210 VVGFNLGSKDEDVIAPIDNCLNVPKVAPYLARKFTDFVTHAKSPIYDRSRNSGVWKFITV 269 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 ++ M++ V +S+ + + + + Sbjct: 270 RTTEEGKTMLVVVVYKSEECQVDPDDVAQLTETFQEDVDSLYLCETTKYEGYGNDPVFTL 329 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L + E+ + I P SFFQTN A L++ + D+ CG G Sbjct: 330 LNGTATIEEKLRGLKFDISPMSFFQTNTPGAEILFSRVESLAEVDKSTVLIDVCCGTGVI 389 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPE----- 302 GL A ++ GI+I +AI AK++A + + +F A + D E Sbjct: 390 GLSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPGILDQCEAEGSR 449 Query: 303 -LVLVNPPRRGIGKPLCDYLSTMA-PRFIIYSSCNAQTMAKDIREL----------PGFR 350 +V+V+PPR G+ K + + ++Y SCN +++ +D ++ F+ Sbjct: 450 VVVIVDPPRDGLHKTAAKAIRECKLLKRVVYISCNPESLVRDSKKFLFAENNNFATQPFQ 509 Query: 351 IERVQLFDMFPHTAHYEVLTLLVKQ 375 D+FPHT E++ L+ ++ Sbjct: 510 PVEWFGVDLFPHTDRLELVMLMQRE 534 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 68/379 (17%), Positives = 130/379 (34%), Gaps = 69/379 (18%) Query: 3 CALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSG------PEQGFR 56 C L+ G C C + Q+ K + L E + +R Sbjct: 68 CKLF--GICGGCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYNYR 125 Query: 57 NKAKMVVSGSVEKPLLGMLHRD-GTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNV 115 N+A + + LLG R + C + + + L+ Sbjct: 126 NRADFSI---NRQNLLGFKIRGTHKFLHVECCHIMHDKINKMLSLLQG------------ 170 Query: 116 ARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPV 175 + + + I + + G ++ P++ + Sbjct: 171 KKPKRKSHNITIRYGINTGTWLI-----------------------QPEMDTV------- 200 Query: 176 HMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVK 235 T Q+ ER I SFFQ N A +L T +++ K Sbjct: 201 ----------EIETGQKFYYERLLGKDFIISAPSFFQVNTYQAEKLIQTVLNYI-TQEDK 249 Query: 236 HMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFAT 295 + D + GVG F + A ++ IE + A A+ + + + + + Sbjct: 250 TVIDAYAGVGTFTVFLAQKAEKVIAIEESRSAYKDAQINIK--NFDNITYLCKKTEEALF 307 Query: 296 AQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELP--GFRIER 353 + ++++PPR G K + ++ + +IY SC T+A+D++ L G++++ Sbjct: 308 ESKINGDAIVIDPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKE 367 Query: 354 VQLFDMFPHTAHYEVLTLL 372 +Q DMFP T H E + L+ Sbjct: 368 IQPVDMFPQTYHIENVALM 386 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 144/368 (39%), Gaps = 20/368 (5%) Query: 12 RSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGP--EQGFRNKAKMVVSGSVEK 69 S QL K +K L P+ E +RNK + Sbjct: 81 GSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQNT 140 Query: 70 PLLGMLHRDGT-PEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK-RGELKYILL 127 +G+ ++ + L V + Y+ + + L I L Sbjct: 141 IKIGLYEKNSHNLIEQDSYDLVSNEAENVL-----IWLSKNINKYDCFKNVKNALTSITL 195 Query: 128 TESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIMEGETEIY 187 ES + +ML F L+ ++ + + ++ ++ I V + + Y Sbjct: 196 RESYVNKKIMLYFTASKAFDLS--KQFVNDIAKEFENIETIMVIVNDKVV-------YSY 246 Query: 188 LTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGF 247 L+E+ L ++ SFFQ N +LY D + K + D +CG+G Sbjct: 247 LSEKSYLIDKIGKFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVVLDAYCGIGTI 306 Query: 248 GLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDVPELVLVN 307 L A ++ G+EI EA+ AK++A + + +F + D + + + + V+V+ Sbjct: 307 SLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFISGDVIKTIDSINEKIDTVVVD 366 Query: 308 PPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL--PGFRIERVQLFDMFPHTAH 365 PPR G+ + + + P I Y SCN TM +DI +L G+ + ++ DMF T H Sbjct: 367 PPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDMFSQTYH 426 Query: 366 YEVLTLLV 373 E++ +L Sbjct: 427 IEMVAVLK 434 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.150 0.458 Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,337,436,053 Number of Sequences: 3077464 Number of extensions: 99469100 Number of successful extensions: 321202 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4194 Number of HSP's successfully gapped in prelim test: 7363 Number of HSP's that attempted gapping in prelim test: 305339 Number of HSP's gapped (non-prelim): 12498 length of query: 375 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 245 effective length of database: 640,326,036 effective search space: 156879878820 effective search space used: 156879878820 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 94 (40.6 bits)