09/01/2012 12:00:18 : INFO  : Run start: Mon Jan  9 12:00:18 GMT 2012
09/01/2012 12:00:20 : INFO  : Initialised job
09/01/2012 12:00:20 : INFO  : Renaming log file 'phyre2_20120109_120017.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/phyre_20120109_120017.log'
09/01/2012 12:00:21 : INFO  : Initialised job:
Sequence
>batch____
MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK
MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRG
ELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQLKVITVNIQPVHMAIM
EGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL
FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV
PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPGFRIERVQLFDMF
PHTAHYEVLTLLVKQ

09/01/2012 12:00:22 : INFO  : Checked sequence
09/01/2012 12:00:23 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 12:00:23 : INFO  : PSI-BLAST 3 iterations
09/01/2012 12:02:22 : INFO  : PSI-BLAST 5 iterations
09/01/2012 12:05:24 : INFO  : Finished PSI-BLAST
09/01/2012 12:05:25 : INFO  : Running Buildali to generate a3m file
09/01/2012 12:32:49 : INFO  : Converting to HMM
09/01/2012 12:32:54 : INFO  : Calibrating HMM
09/01/2012 12:33:07 : INFO  : Searching HMM database
09/01/2012 12:41:12 : INFO  : Finished buildali
09/01/2012 12:41:12 : INFO  : Predicting secondary structure
09/01/2012 12:41:16 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 12:41:16 : INFO  : Predicting Disordered regions
09/01/2012 12:41:17 : INFO  : Predicted Disorder (Disopred)
09/01/2012 12:41:17 : INFO  : Running memsat_svm check
09/01/2012 12:44:41 : INFO  : Globular protein
09/01/2012 12:44:41 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c4351954e67f2882'
09/01/2012 12:44:41 : INFO  : Initialising fold library search
09/01/2012 12:44:42 : INFO  : Initialised search input
09/01/2012 12:44:43 : INFO  : Building Ensemble models
09/01/2012 12:44:44 : INFO  : Building hh.c2vs1A_.model.1.pdb
09/01/2012 12:44:48 : INFO  : Building hh.c1uwvA_.model.2.pdb
09/01/2012 12:44:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/hh.c1uwvA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/c1uwvA_.2.pdb
09/01/2012 12:44:52 : INFO  : Building hh.d1uwva2.model.3.pdb
09/01/2012 12:44:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/hh.d1uwva2.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/d1uwva2.3.pdb
09/01/2012 12:44:58 : INFO  : Building hh.c3bt7A_.model.4.pdb
09/01/2012 12:45:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/hh.c3bt7A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4351954e67f2882/c3bt7A_.4.pdb
09/01/2012 12:45:03 : INFO  : Building c2vs1A_.1.pdb
09/01/2012 12:45:06 : INFO  : Building c1uwvA_.2.pdb
09/01/2012 12:45:10 : INFO  : Building d1uwva2.3.pdb
09/01/2012 12:45:15 : INFO  : Building c3bt7A_.4.pdb
09/01/2012 12:45:20 : INFO  : Building c3c0kB_.5.pdb
09/01/2012 12:45:25 : INFO  : Building c1wxwA_.6.pdb
09/01/2012 12:45:29 : INFO  : Building c2as0A_.7.pdb
09/01/2012 12:45:34 : INFO  : Building c2b78A_.8.pdb
09/01/2012 12:45:38 : INFO  : Building d2as0a2.9.pdb
09/01/2012 12:45:42 : INFO  : Building c3a26A_.10.pdb
09/01/2012 12:45:46 : INFO  : Building d1wxxa2.11.pdb
09/01/2012 12:45:50 : INFO  : Building d2b78a2.12.pdb
09/01/2012 12:45:54 : INFO  : Building d2frna1.13.pdb
09/01/2012 12:45:58 : INFO  : Building c3dmgA_.14.pdb
09/01/2012 12:46:01 : INFO  : Building c3a27A_.15.pdb
09/01/2012 12:46:05 : INFO  : Building d2igta1.16.pdb
09/01/2012 12:46:09 : INFO  : Building c2yx1A_.17.pdb
09/01/2012 12:46:14 : INFO  : Building d1wy7a1.18.pdb
09/01/2012 12:46:18 : INFO  : Building c2yxdA_.19.pdb
09/01/2012 12:46:22 : INFO  : Building d1nv8a_.20.pdb
09/01/2012 12:46:48 : INFO  : Finished HH model building
09/01/2012 12:46:49 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 12:47:31 : INFO  : html domain output complete ID 'c4351954e67f2882'
09/01/2012 15:12:24 : INFO  : Run end  : Mon Jan  9 15:12:24 GMT 2012
