Phyre 2 alignment of P24082 with d2fcwb1

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Job Description | P24082
Confidence | 33.01% | Date | Thu Jan 5 11:40:43 GMT 2012
Rank | 20 | Aligned Residues | 25
% Identity | 32% | Template | d2fcwb1
SCOP info | LDL receptor-like module | LDL receptor-like module | LDL receptor-like module
Resolution | 1.26

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 382 | . | . | . | . | . | . | . | 390 |  | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | Y | S | C | E | S | K | T | S | . | G | K | V | M | V | C | G | G | D | V | F | C | L | D | G | E
Query Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | F | R | C | H | D | G | K | C | I | S | R | Q | F | V | C | D | S | D | R | D | C | L | D | G | S
Template Known Secondary structure |  |  |  |  |  | T | T | S |  |  |  |  | G | G | G | T | T | S | S | S |  |  | S | T | T |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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