10/01/2012 03:05:28 : INFO  : Run start: Tue Jan 10 03:05:27 GMT 2012
10/01/2012 03:05:32 : INFO  : Initialised job
10/01/2012 03:05:34 : INFO  : Renaming log file 'phyre2_20120110_030526.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/phyre_20120110_030526.log'
10/01/2012 03:05:35 : INFO  : Initialised job:
Sequence
>batch____
MKRILPLILALVAGMAQADSNSDYRAGSDFAHQIKGQGSSSIQGFKPQESIPGYNANPDE
TKYYGGVTAGGDGGLKNDGTTEWATGETGKTITESFMNKPKDILSPDAPFIQTGRDVVNR
ADSIVGNTGQQCSAQEISRSEYTNYTCERDLQVEQYCTRTARMELQGSTTWETRTLEYEM
SQLPAREVNGQYVVSITSPVTGEIVDAHYSWSRTYLQKSVPMTITVLGTPLSWNAKYSAD
ASFTPVQKTLTAGVAFTSSHPVRVGNTKFKRHTAMKLRLVVRVKKASYTPYVVWSESCPF
SKELGKLTKTECTEAGGNRTLVKDGQSYSMYQSCWAYRDTYVTQSADKGTCQTYTDNPAC
TLVSHQCAFYSEEGACLHEYATYSCESKTSGKVMVCGGDVFCLDGECDKAQSGKSNDFAE
AVSQLAALAAAGKDVAALNGVDVRAFTGQAKFCKKAAAGYSNCCKDSGWGQDIGLAKCSS
DEKALAKAKSNKLTVSVGEFCSKKVLGVCLEKKRSYCQFDSKLAQIVQQQGRNGQLRISF
GSAKHPDCRGITVDELQKIQFNRLDFTNFYEDLMNNQKIPDSGVLTQKVKEQIADQLKQA
GQ

10/01/2012 03:05:36 : INFO  : Checked sequence
10/01/2012 03:05:39 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 03:05:40 : INFO  : PSI-BLAST 3 iterations
10/01/2012 03:07:41 : INFO  : PSI-BLAST 5 iterations
10/01/2012 03:14:13 : INFO  : Finished PSI-BLAST
10/01/2012 03:14:15 : INFO  : Running Buildali to generate a3m file
10/01/2012 03:24:37 : INFO  : Converting to HMM
10/01/2012 03:24:40 : INFO  : Calibrating HMM
10/01/2012 03:25:01 : INFO  : Searching HMM database
10/01/2012 03:34:58 : INFO  : Finished buildali
10/01/2012 03:35:00 : INFO  : Predicting secondary structure
10/01/2012 03:35:07 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 03:35:09 : INFO  : Predicting Disordered regions
10/01/2012 03:35:13 : INFO  : Predicted Disorder (Disopred)
10/01/2012 03:35:14 : INFO  : Running memsat_svm check
10/01/2012 03:39:44 : INFO  : Globular protein
10/01/2012 03:39:45 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c4293149cc0b3a3a'
10/01/2012 03:39:47 : INFO  : Initialising fold library search
10/01/2012 03:39:50 : INFO  : Initialised search input
10/01/2012 03:39:52 : INFO  : Building Ensemble models
10/01/2012 03:39:55 : INFO  : Building hh.d1nxha_.model.1.pdb
10/01/2012 03:40:08 : INFO  : Building hh.c2r09A_.model.2.pdb
10/01/2012 03:40:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/hh.c2r09A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/c2r09A_.1.pdb
10/01/2012 03:40:21 : INFO  : Building hh.d1xsza1.model.3.pdb
10/01/2012 03:40:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/hh.d1xsza1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/d1xsza1.4.pdb
10/01/2012 03:40:36 : INFO  : Building hh.c2bkxB_.model.4.pdb
10/01/2012 03:40:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/hh.c2bkxB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/c2bkxB_.9.pdb
10/01/2012 03:40:51 : INFO  : Building hh.d1a8ra_.model.5.pdb
10/01/2012 03:41:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/hh.d1a8ra_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c4293149cc0b3a3a/d1a8ra_.11.pdb
10/01/2012 03:41:05 : INFO  : Building c2r09A_.1.pdb
10/01/2012 03:41:18 : INFO  : Building d1nxha_.2.pdb
10/01/2012 03:41:31 : INFO  : Building d1re0b_.3.pdb
10/01/2012 03:41:44 : INFO  : Building d1xsza1.4.pdb
10/01/2012 03:41:57 : INFO  : Building d1pbva_.5.pdb
10/01/2012 03:42:09 : INFO  : Building d1ku1a_.6.pdb
10/01/2012 03:42:22 : INFO  : Building d2r09a1.7.pdb
10/01/2012 03:42:35 : INFO  : Building d1r8se_.8.pdb
10/01/2012 03:42:47 : INFO  : Building c2bkxB_.9.pdb
10/01/2012 03:43:00 : INFO  : Building c1xszA_.10.pdb
10/01/2012 03:43:13 : INFO  : Building d1a8ra_.11.pdb
10/01/2012 03:43:25 : INFO  : Building d1bc9a_.12.pdb
10/01/2012 03:43:38 : INFO  : Building c2plyB_.13.pdb
10/01/2012 03:43:51 : INFO  : Building c1is7F_.14.pdb
10/01/2012 03:44:05 : INFO  : Building d1wpla_.15.pdb
10/01/2012 03:44:19 : INFO  : Building c1wm9D_.16.pdb
10/01/2012 03:44:32 : INFO  : Building d1wura1.17.pdb
10/01/2012 03:44:45 : INFO  : Building c2kriB_.18.pdb
10/01/2012 03:44:58 : INFO  : Building d2fcwb2.19.pdb
10/01/2012 03:45:11 : INFO  : Building d2fcwb1.20.pdb
10/01/2012 03:46:34 : INFO  : Finished HH model building
10/01/2012 03:46:36 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 03:47:41 : INFO  : html domain output complete ID 'c4293149cc0b3a3a'
10/01/2012 03:51:46 : INFO  : Run end  : Tue Jan 10 03:51:45 GMT 2012
