Phyre 2 alignment of P24082 with c2xzmS_

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Job Description | P24082
Confidence | 14.56% | Date | Thu Jan 5 11:40:43 GMT 2012
Rank | 53 | Aligned Residues | 29
% Identity | 17% | Template | c2xzmS_
PDB info | PDB header:ribosome | Chain: S: PDB Molecule:rps15e; | PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
Resolution | 3.93 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 549 | 550 | . | . | . | . | . | . | . | . | . | 560 | . |  |  |  |  | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | G | I | T | V | D | E | L | Q | K | I | Q | F | . | . | . | . | N | R | L | D | F | T | N | F | Y | E | D | L | M | N | N | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | G | K | G | L | E | E | L | T | A | L | A | S | G | S | N | S | E | K | L | I | S | D | E | L | A | A | L | F | D | A | K | T
Template Known Secondary structure |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S | T | T |  |  | S | S | S |  |  |  |  |  |  |  | S |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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