Phyre 2 Results for P24082

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P24082
Date | Thu Jan 5 11:40:43 GMT 2012
Unique Job ID | c4293149cc0b3a3a

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2r09A_
Top template information
PDB header:signaling protein Chain: A: PDB Molecule:cytohesin-3; PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor
Confidence and coverage
Confidence: | 70.9% | Coverage: | 7%
45 residues ( 7% of your sequence) have been modelled with 70.9% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | R | I | L | P | L | I | L | A | L | V | A | G | M | A | Q | A | D | S | N | S | D | Y | R | A | G | S | D | F | A | H | Q | I | K | G | Q | G | S | S | S | I | Q | G | F | K | P | Q | E | S | I | P | G | Y | N | A | N | P | D | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | K | Y | Y | G | G | V | T | A | G | G | D | G | G | L | K | N | D | G | T | T | E | W | A | T | G | E | T | G | K | T | I | T | E | S | F | M | N | K | P | K | D | I | L | S | P | D | A | P | F | I | Q | T | G | R | D | V | V | N | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | D | S | I | V | G | N | T | G | Q | Q | C | S | A | Q | E | I | S | R | S | E | Y | T | N | Y | T | C | E | R | D | L | Q | V | E | Q | Y | C | T | R | T | A | R | M | E | L | Q | G | S | T | T | W | E | T | R | T | L | E | Y | E | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | Q | L | P | A | R | E | V | N | G | Q | Y | V | V | S | I | T | S | P | V | T | G | E | I | V | D | A | H | Y | S | W | S | R | T | Y | L | Q | K | S | V | P | M | T | I | T | V | L | G | T | P | L | S | W | N | A | K | Y | S | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | S | F | T | P | V | Q | K | T | L | T | A | G | V | A | F | T | S | S | H | P | V | R | V | G | N | T | K | F | K | R | H | T | A | M | K | L | R | L | V | V | R | V | K | K | A | S | Y | T | P | Y | V | V | W | S | E | S | C | P | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | K | E | L | G | K | L | T | K | T | E | C | T | E | A | G | G | N | R | T | L | V | K | D | G | Q | S | Y | S | M | Y | Q | S | C | W | A | Y | R | D | T | Y | V | T | Q | S | A | D | K | G | T | C | Q | T | Y | T | D | N | P | A | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  | ? | ? | ? | ? |  | ? |  |  | ? |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | T | L | V | S | H | Q | C | A | F | Y | S | E | E | G | A | C | L | H | E | Y | A | T | Y | S | C | E | S | K | T | S | G | K | V | M | V | C | G | G | D | V | F | C | L | D | G | E | C | D | K | A | Q | S | G | K | S | N | D | F | A | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | A | V | S | Q | L | A | A | L | A | A | A | G | K | D | V | A | A | L | N | G | V | D | V | R | A | F | T | G | Q | A | K | F | C | K | K | A | A | A | G | Y | S | N | C | C | K | D | S | G | W | G | Q | D | I | G | L | A | K | C | S | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |  |  | ? | ? |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | D | E | K | A | L | A | K | A | K | S | N | K | L | T | V | S | V | G | E | F | C | S | K | K | V | L | G | V | C | L | E | K | K | R | S | Y | C | Q | F | D | S | K | L | A | Q | I | V | Q | Q | Q | G | R | N | G | Q | L | R | I | S | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | G | S | A | K | H | P | D | C | R | G | I | T | V | D | E | L | Q | K | I | Q | F | N | R | L | D | F | T | N | F | Y | E | D | L | M | N | N | Q | K | I | P | D | S | G | V | L | T | Q | K | V | K | E | Q | I | A | D | Q | L | K | Q | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | .
Sequence |  | G | Q
Secondary structure |  |  |
SS confidence |  |  |
Disorder |  | ? | ?
Disorder confidence |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2r09A_ |

### PDB 2r09 chain A

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 70.9%
Identity: 11%
PDB header:signaling protein
Chain: A: PDB Molecule:cytohesin-3;
PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor

Phyre2
2 |
| d1nxha_ |

### PDB 1nxh chain A

Region: 550 - 589
Aligned: 39
Modelled: 40
Confidence: 69.1%
Identity: 23%
Fold: Hypothetical protein MTH393
Superfamily: Hypothetical protein MTH393
Family: Hypothetical protein MTH393

Phyre2
3 |
| d1re0b_ |

### PDB 1re0 chain B

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 67.6%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
4 |
| d1xsza1 |

### PDB 1xsz chain A domain 1

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 67.1%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
5 |
| d1pbva_ |

### PDB 1pbv chain A

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 66.6%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
6 |
| d1ku1a_ |

### PDB 1ku1 chain A

Region: 556 - 597
Aligned: 42
Modelled: 42
Confidence: 65.9%
Identity: 12%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
7 |
| d2r09a1 |

### PDB 2r09 chain A domain 1

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 65.3%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
8 |
| d1r8se_ |

### PDB 1r8s chain E

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 63.7%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
9 |
| c2bkxB_ |

### PDB 2bkx chain B

Region: 523 - 566
Aligned: 34
Modelled: 44
Confidence: 58.3%
Identity: 24%
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily

Phyre2
10 |
| c1xszA_ |

### PDB 1xsz chain A

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 56.5%
Identity: 13%
PDB header:signaling protein
Chain: A: PDB Molecule:guanine nucleotide exchange protein;
PDBTitle: the structure of ralf

Phyre2
11 |
| d1a8ra_ |

### PDB 1a8r chain A

Region: 495 - 536
Aligned: 30
Modelled: 42
Confidence: 51.9%
Identity: 30%
Fold: T-fold
Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
Family: GTP cyclohydrolase I

Phyre2
12 |
| d1bc9a_ |

### PDB 1bc9 chain A

Region: 556 - 600
Aligned: 45
Modelled: 45
Confidence: 43.4%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
13 |
| c2plyB_ |

### PDB 2ply chain B

Region: 543 - 601
Aligned: 59
Modelled: 59
Confidence: 43.2%
Identity: 19%
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.

Phyre2
14 |
| c1is7F_ |

### PDB 1is7 chain F

Region: 521 - 536
Aligned: 16
Modelled: 16
Confidence: 43.0%
Identity: 50%
PDB header:hydrolase/protein binding
Chain: F: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex

Phyre2
15 |
| d1wpla_ |

### PDB 1wpl chain A

Region: 521 - 536
Aligned: 16
Modelled: 16
Confidence: 43.0%
Identity: 50%
Fold: T-fold
Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
Family: GTP cyclohydrolase I

Phyre2
16 |
| c1wm9D_ |

### PDB 1wm9 chain D

Region: 521 - 536
Aligned: 16
Modelled: 16
Confidence: 42.4%
Identity: 44%
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8

Phyre2
17 |
| d1wura1 |

### PDB 1wur chain A domain 1

Region: 521 - 536
Aligned: 16
Modelled: 16
Confidence: 42.4%
Identity: 44%
Fold: T-fold
Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
Family: GTP cyclohydrolase I

Phyre2
18 |
| c2kriB_ |

### PDB 2kri chain B

Region: 382 - 406
Aligned: 25
Modelled: 25
Confidence: 35.8%
Identity: 32%
PDB header:protein binding/endocytosis
Chain: B: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: structure of a complex between domain v of beta2-2 glycoprotein i and the fourth ligand-binding module from3 ldlr determined with haddock

Phyre2
19 |
| d2fcwb2 |

### PDB 2fcw chain B domain 2

Region: 382 - 406
Aligned: 25
Modelled: 25
Confidence: 35.7%
Identity: 32%
Fold: LDL receptor-like module
Superfamily: LDL receptor-like module
Family: LDL receptor-like module

Phyre2
20 |
| d2fcwb1 |

### PDB 2fcw chain B domain 1

Region: 382 - 406
Aligned: 25
Modelled: 25
Confidence: 33.0%
Identity: 32%
Fold: LDL receptor-like module
Superfamily: LDL receptor-like module
Family: LDL receptor-like module

Phyre2
21 |
22 |
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24 |
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33 |
34 |
35 |
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97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2r09A_ |
|  | 70.9 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:cytohesin-3; PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor
2 | d1nxha_ |
|  | 69.1 | 23 | Fold:Hypothetical protein MTH393 Superfamily:Hypothetical protein MTH393 Family:Hypothetical protein MTH393
3 | d1re0b_ |
|  | 67.6 | 11 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
4 | d1xsza1 |
|  | 67.1 | 13 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
5 | d1pbva_ |
|  | 66.6 | 11 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
6 | d1ku1a_ |
|  | 65.9 | 12 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
7 | d2r09a1 |
|  | 65.3 | 11 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
8 | d1r8se_ |
|  | 63.7 | 11 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
9 | c2bkxB_ |
|  | 58.3 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily
10 | c1xszA_ |
|  | 56.5 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:guanine nucleotide exchange protein; PDBTitle: the structure of ralf
11 | d1a8ra_ |
|  | 51.9 | 30 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
12 | d1bc9a_ |
|  | 43.4 | 13 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
13 | c2plyB_ |
|  | 43.2 | 19 | PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
14 | c1is7F_ |
|  | 43.0 | 50 | PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
15 | d1wpla_ |
|  | 43.0 | 50 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
16 | c1wm9D_ |
|  | 42.4 | 44 | PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
17 | d1wura1 |
|  | 42.4 | 44 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
18 | c2kriB_ |
|  | 35.8 | 32 | PDB header:protein binding/endocytosis Chain: B: PDB Molecule:low-density lipoprotein receptor; PDBTitle: structure of a complex between domain v of beta2-2 glycoprotein i and the fourth ligand-binding module from3 ldlr determined with haddock
19 | d2fcwb2 |
|  | 35.7 | 32 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
20 | d2fcwb1 |
|  | 33.0 | 32 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
21 | c3a7qB_ |
| not modelled | 32.9 | 28 | PDB header:signaling protein Chain: B: PDB Molecule:low-density lipoprotein receptor-related protein 8; PDBTitle: structural basis for specific recognition of reelin by its receptors
22 | c1wloA_ |
| not modelled | 30.6 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8
23 | d1ni7a_ |
| not modelled | 30.3 | 20 | Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like
24 | c1f8zA_ |
| not modelled | 29.7 | 16 | PDB header:lipid binding protein Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: nmr structure of the sixth ligand-binding module of the ldl2 receptor
25 | d1f8za_ |
| not modelled | 29.7 | 16 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
26 | c1d2jA_ |
| not modelled | 28.9 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: ldl receptor ligand-binding module 6
27 | d1ajja_ |
| not modelled | 28.3 | 24 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
28 | d1n7da7 |
| not modelled | 28.1 | 32 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
29 | c3a23A_ |
| not modelled | 23.2 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
30 | c2ekwC_ |
| not modelled | 23.1 | 21 | PDB header:contractile protein Chain: C: PDB Molecule:myosin catalytic light chain lc-1, mantle muscle; PDBTitle: the crystal structure of squid myosin s1 in the presence of2 so4 2-
31 | d1j8ea_ |
| not modelled | 23.1 | 28 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
32 | c4a18U_ |
| not modelled | 22.8 | 33 | PDB header:ribosome Chain: U: PDB Molecule:rpl13; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
33 | c3u5eL_ |
| not modelled | 22.2 | 27 | PDB header:ribosome Chain: L: PDB Molecule:60s ribosomal protein l13-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution
34 | d2enda_ |
| not modelled | 22.1 | 13 | Fold:T4 endonuclease V Superfamily:T4 endonuclease V Family:T4 endonuclease V
35 | c2eboB_ |
| not modelled | 21.6 | 14 | PDB header:envelope glycoprotein Chain: B: PDB Molecule:ebola virus envelope glycoprotein; PDBTitle: core structure of gp2 from ebola virus
36 | d1e7la1 |
| not modelled | 21.4 | 12 | Fold:LEM/SAP HeH motif Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains Family:Recombination endonuclease VII, C-terminal and dimerization domains
37 | d2gtln2 |
| not modelled | 21.0 | 24 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
38 | c1tpgA_ |
| not modelled | 20.1 | 12 | PDB header:plasminogen activation Chain: A: PDB Molecule:t-plasminogen activator f1-g; PDBTitle: f1-g module pair residues 1-91 (c83s) of tissue-type2 plasminogen activator (t-pa) (nmr, 298k, ph2.95,3 representative structure)
39 | d2gtlm2 |
| not modelled | 18.9 | 24 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
40 | c3fwcO_ |
| not modelled | 18.6 | 18 | PDB header:cell cycle, transcription Chain: O: PDB Molecule:protein sus1; PDBTitle: sac3:sus1:cdc31 complex
41 | c1ponB_ |
| not modelled | 16.1 | 33 | PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr
42 | c3qfwB_ |
| not modelled | 16.0 | 27 | PDB header:lyase Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase/oxygenase large PDBTitle: crystal structure of rubisco-like protein from rhodopseudomonas2 palustris
43 | d1qwoa_ |
| not modelled | 16.0 | 23 | Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Histidine acid phosphatase
44 | d1bjfa_ |
| not modelled | 15.9 | 18 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
45 | d2gtlo2 |
| not modelled | 15.7 | 32 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
46 | c1mgpA_ |
| not modelled | 15.6 | 12 | PDB header:lipid binding protein Chain: A: PDB Molecule:hypothetical protein tm841; PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
47 | d1mgpa_ |
| not modelled | 15.6 | 12 | Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like
48 | d1f7ea_ |
| not modelled | 15.4 | 13 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module
49 | c1tt3A_ |
| not modelled | 15.2 | 39 | PDB header:toxin Chain: A: PDB Molecule:omega-conotoxin mviia; PDBTitle: nmr soulution structure of omega-conotoxin [k10]mviia
50 | d1g8ia_ |
| not modelled | 15.1 | 23 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
51 | d1mzga_ |
| not modelled | 14.8 | 8 | Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like
52 | c3h5cB_ |
| not modelled | 14.8 | 28 | PDB header:hydrolase inhibitor/blood clotting Chain: B: PDB Molecule:vitamin k-dependent protein z; PDBTitle: x-ray structure of protein z-protein z inhibitor complex
53 | c2xzmS_ |
| not modelled | 14.6 | 17 | PDB header:ribosome Chain: S: PDB Molecule:rps15e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
54 | d1wdcc_ |
| not modelled | 14.5 | 12 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
55 | c2xgvA_ |
| not modelled | 13.9 | 11 | PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
56 | c2lgpA_ |
| not modelled | 13.4 | 33 | PDB header:protein binding Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: solution structure of la45 from ldlr
57 | c3gmxB_ |
| not modelled | 13.3 | 35 | PDB header:protein binding Chain: B: PDB Molecule:blp; PDBTitle: crystal structure of beta-lactamse inhibitory protein-like2 protein (blp) at 1.05 angstrom resolution
58 | d2bbga_ |
| not modelled | 13.2 | 27 | Fold:Amb V allergen Superfamily:Amb V allergen Family:Amb V allergen
59 | d1cixa_ |
| not modelled | 12.6 | 46 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins
60 | c1g6uB_ |
| not modelled | 12.3 | 27 | PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer
61 | c3gmvX_ |
| not modelled | 12.3 | 26 | PDB header:protein binding Chain: X: PDB Molecule:beta-lactamase inhibitory protein blip-i; PDBTitle: crystal structure of beta-lactamse inhibitory protein-i2 (blip-i) in apo form
62 | c2i1pA_ |
| not modelled | 12.2 | 21 | PDB header:ligand binding protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein PDBTitle: solution structure of the twelfth cysteine-rich ligand-2 binding repeat in rat megalin
63 | c2jm4A_ |
| not modelled | 12.1 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:relaxin receptor 1; PDBTitle: the solution nmr structure of the relaxin (rxfp1) receptor2 ldla module.
64 | c3pbiA_ |
| not modelled | 12.1 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
65 | d2o8ra1 |
| not modelled | 12.0 | 13 | Fold:Spectrin repeat-like Superfamily:PPK N-terminal domain-like Family:PPK N-terminal domain-like
66 | d1whra_ |
| not modelled | 11.9 | 15 | Fold:IF3-like Superfamily:R3H domain Family:R3H domain
67 | c2k1gA_ |
| not modelled | 11.8 | 27 | PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162
68 | c2on3A_ |
| not modelled | 11.6 | 14 | PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane
69 | c2fcdA_ |
| not modelled | 11.5 | 22 | PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae
70 | c2xivA_ |
| not modelled | 11.3 | 21 | PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis
71 | c2knyA_ |
| not modelled | 11.1 | 32 | PDB header:metal binding protein Chain: A: PDB Molecule:lrp-1, linker, apo-e; PDBTitle: fusion construct of cr17 from lrp-1 and apoe residues 130-149
72 | d1bpoa1 |
| not modelled | 10.9 | 29 | Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Clathrin heavy-chain linker domain
73 | c2fylB_ |
| not modelled | 10.9 | 23 | PDB header:surface active protein Chain: B: PDB Molecule:low-density lipoprotein receptor-related protein PDBTitle: haddock model of the complex between double module of lrp,2 cr56, and first domain of receptor associated protein, rap-3 d1.
74 | c2fcwB_ |
| not modelled | 10.1 | 32 | PDB header:lipid transport/endocytosis/chaperone Chain: B: PDB Molecule:low-density lipoprotein receptor; PDBTitle: structure of a complex between the pair of the ldl receptor2 ligand-binding modules 3-4 and the receptor associated3 protein (rap).
75 | d1o66a_ |
| not modelled | 9.7 | 28 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB
76 | d1odha_ |
| not modelled | 9.6 | 37 | Fold:GCM domain Superfamily:GCM domain Family:GCM domain
77 | c2iswB_ |
| not modelled | 9.5 | 9 | PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate
78 | d1dval1 |
| not modelled | 9.5 | 19 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module
79 | d1r75a_ |
| not modelled | 9.4 | 26 | Fold:Smp-1-like Superfamily:Smp-1-like Family:Smp-1-like
80 | c2kvcA_ |
| not modelled | 9.2 | 23 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
81 | d1k7ba_ |
| not modelled | 9.1 | 24 | Fold:LDL receptor-like module Superfamily:LDL receptor-like module Family:LDL receptor-like module
82 | c3gt2A_ |
| not modelled | 9.1 | 13 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c
83 | c3i86A_ |
| not modelled | 9.1 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204
84 | d1k4ta3 |
| not modelled | 9.0 | 17 | Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
85 | c2rpbA_ |
| not modelled | 8.9 | 6 | PDB header:membrane protein Chain: A: PDB Molecule:hypothetical membrane protein; PDBTitle: the solution structure of membrane protein
86 | d3by5a1 |
| not modelled | 8.8 | 12 | Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like
87 | c3by5A_ |
| not modelled | 8.8 | 12 | PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58
88 | c3si5X_ |
| not modelled | 8.8 | 38 | PDB header:cell cycle Chain: X: PDB Molecule:protein casc5; PDBTitle: kinetochore-bubr1 kinase complex
89 | d1ay7b_ |
| not modelled | 8.7 | 13 | Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related
90 | c2knxA_ |
| not modelled | 8.2 | 32 | PDB header:protein binding Chain: A: PDB Molecule:prolow-density lipoprotein receptor-related protein 1; PDBTitle: solution structure of complement repeat cr17 from lrp-1
91 | c2ojlB_ |
| not modelled | 8.2 | 27 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68.
92 | c3n2bD_ |
| not modelled | 7.5 | 17 | PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae.
93 | c2ri0B_ |
| not modelled | 7.5 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans
94 | c2xr9A_ |
| not modelled | 7.4 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2)
95 | d2v9va1 |
| not modelled | 7.4 | 71 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB
96 | c2npbA_ |
| not modelled | 7.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw
97 | d2j8ba1 |
| not modelled | 7.2 | 18 | Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors
98 | c1y89B_ |
| not modelled | 7.1 | 38 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein
99 | c2p0gB_ |
| not modelled | 7.1 | 30 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0