18/01/2012 14:41:20 : INFO  : Run start: Wed Jan 18 14:41:19 GMT 2012
18/01/2012 14:41:25 : INFO  : Initialised job
18/01/2012 14:41:27 : INFO  : Renaming log file 'phyre2_20120118_144119.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c42098594ef7104e/phyre_20120118_144119.log'
18/01/2012 14:41:28 : INFO  : Initialised job:
Sequence
>batch____
MWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITPLAVPIFMENACVLLMG
VLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARVATR
QSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKALALTYLELTVLSYPAAAITLIG
SGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWPGLGFVGAGLGLTISRYIGAVA
ILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIGIPASVESVLFTSGRLLTQMFVAGM
GTSVIAGNFIAFSIAALINLPGSALGSASTIITGRRLGVGQIAQAEIQLRHVFWLSTLGL
TAIAWLTAPFAGVMASFYTQDPQVKHVVVILIWLNALFMPIWSASWVLPAGFKGARDARY
AMWVSMLSMWGCRVVVGYVLGIMLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRWLWKYP
RPEPQKCEKKPVVSE

18/01/2012 14:41:29 : INFO  : Checked sequence
18/01/2012 14:41:33 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 14:41:34 : INFO  : PSI-BLAST 3 iterations
18/01/2012 14:45:14 : INFO  : PSI-BLAST 5 iterations
18/01/2012 14:50:54 : INFO  : Finished PSI-BLAST
18/01/2012 14:50:55 : INFO  : Running Buildali to generate a3m file
18/01/2012 15:50:13 : INFO  : Converting to HMM
18/01/2012 15:50:26 : INFO  : Calibrating HMM
18/01/2012 15:50:47 : INFO  : Searching HMM database
18/01/2012 16:02:21 : INFO  : Finished buildali
18/01/2012 16:02:22 : INFO  : Predicting secondary structure
18/01/2012 16:02:29 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 16:02:30 : INFO  : Predicting Disordered regions
18/01/2012 16:02:33 : INFO  : Predicted Disorder (Disopred)
18/01/2012 16:02:34 : INFO  : Running memsat_svm check
18/01/2012 16:07:14 : INFO  : Running memsat_svm full
18/01/2012 16:12:39 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c42098594ef7104e'
18/01/2012 16:12:40 : INFO  : Initialising fold library search
18/01/2012 16:12:42 : INFO  : Initialised search input
18/01/2012 16:12:44 : INFO  : Building Ensemble models
18/01/2012 16:12:47 : INFO  : Building hh.c3mkuA_.model.1.pdb
18/01/2012 16:12:59 : INFO  : Building c3mkuA_.1.pdb
18/01/2012 16:13:11 : INFO  : Building d1pw4a_.2.pdb
18/01/2012 16:13:22 : INFO  : Building d1pv7a_.3.pdb
18/01/2012 16:13:33 : INFO  : Building c3qnqD_.4.pdb
18/01/2012 16:13:44 : INFO  : Building d2iuba2.5.pdb
18/01/2012 16:13:55 : INFO  : Building c2kncA_.6.pdb
18/01/2012 16:14:07 : INFO  : Building c2p09A_.7.pdb
18/01/2012 16:14:18 : INFO  : Building d2oara1.8.pdb
18/01/2012 16:14:29 : INFO  : Building c2kncB_.9.pdb
18/01/2012 16:14:40 : INFO  : Building c2oarA_.10.pdb
18/01/2012 16:14:52 : INFO  : Building c1zrtD_.11.pdb
18/01/2012 16:15:03 : INFO  : Building c2k2oA_.12.pdb
18/01/2012 16:15:14 : INFO  : Building c3cwbQ_.13.pdb
18/01/2012 16:15:26 : INFO  : Building c1p84D_.14.pdb
18/01/2012 16:15:37 : INFO  : Building c2yiuE_.15.pdb
18/01/2012 16:15:48 : INFO  : Building c3izsq_.16.pdb
18/01/2012 16:16:01 : INFO  : Building c3izcq_.17.pdb
18/01/2012 16:16:13 : INFO  : Building c1qleB_.18.pdb
18/01/2012 16:16:26 : INFO  : Building c1ar1B_.19.pdb
18/01/2012 16:16:38 : INFO  : Building c1qcrD_.20.pdb
18/01/2012 16:16:59 : INFO  : Finished HH model building
18/01/2012 16:17:02 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 16:17:50 : INFO  : html domain output complete ID 'c42098594ef7104e'
18/01/2012 16:47:26 : INFO  : Run end  : Wed Jan 18 16:47:25 GMT 2012
