BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (160 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 330 6e-90 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 192 2e-48 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 162 4e-39 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 154 1e-36 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 145 3e-34 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 140 2e-32 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 139 4e-32 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 137 1e-31 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 121 9e-27 UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo... 114 1e-24 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 111 6e-24 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 105 4e-22 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 93 3e-18 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 88 8e-17 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 84 2e-15 UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag... 78 8e-14 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 67 3e-10 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 66 3e-10 UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=S... 63 3e-09 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 62 5e-09 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 61 1e-08 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 61 1e-08 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 61 1e-08 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 60 3e-08 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 60 3e-08 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 59 5e-08 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 58 8e-08 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 58 1e-07 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 56 4e-07 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 56 4e-07 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 55 1e-06 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 54 1e-06 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 54 1e-06 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 54 1e-06 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 54 2e-06 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 53 3e-06 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 52 5e-06 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 52 7e-06 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 51 1e-05 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 51 2e-05 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 50 2e-05 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 50 2e-05 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 50 3e-05 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 50 3e-05 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 49 4e-05 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 49 8e-05 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 49 8e-05 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 48 9e-05 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 48 9e-05 UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta... 48 1e-04 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 48 1e-04 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 47 2e-04 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 47 2e-04 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 47 2e-04 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 47 3e-04 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 46 3e-04 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 46 3e-04 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 46 4e-04 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 45 6e-04 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 45 7e-04 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 45 0.001 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 45 0.001 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 44 0.001 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 44 0.001 UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA... 44 0.002 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 44 0.002 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 44 0.002 UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R... 44 0.002 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 43 0.004 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 43 0.004 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 42 0.005 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 42 0.005 UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax... 42 0.006 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 42 0.007 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 42 0.008 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 42 0.008 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 42 0.008 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 41 0.010 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 41 0.011 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 41 0.013 UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 41 0.013 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 41 0.015 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 40 0.019 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 40 0.020 UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax... 40 0.023 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 40 0.024 UniRef50_B0ESC5 Putative uncharacterized protein n=2 Tax=Entamoe... 40 0.029 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 40 0.037 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 39 0.065 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 39 0.081 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 38 0.092 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 330 bits (847), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 157/160 (98%), Positives = 159/160 (99%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MTNLTLDVNIIDFPSIPVAMLPHRC PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD Sbjct: 1 MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT+WGIIR Sbjct: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIR 120 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLET+VYVPLA Sbjct: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA 160 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 87/156 (55%), Positives = 115/156 (73%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++DVNII FP+ +A+L HR SP+L+N + A+FI WRK +GLSPV S T+G+AWDDP T Sbjct: 134 SMDVNIISFPTTRIAVLQHRGSPDLVNTTAARFIAWRKTSGLSPVATSDTWGIAWDDPQT 193 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T EAFRFDICG+V+ P+ +N +GV NGE+ GGR AV RH G LD ++++VW + R WLP Sbjct: 194 TPQEAFRFDICGTVAGPVGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDWLP 253 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ASGE +R P+ F Y N V E L+TD+Y+PLA Sbjct: 254 ASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPLA 289 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 98/157 (62%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ +DV +I+ P VA L H +PE L + +FI WRK TGLSPV S+T+GV DP Sbjct: 132 DIIVDVKLIELPIQKVAQLEHSGAPEKLMETAKQFIEWRKTTGLSPVAISRTYGVPNGDP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T A E FRF CGSV+E +PDN YGV G L GG YAV RH G D + +++G R W Sbjct: 192 NTMAAEDFRFRFCGSVNEAVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG+ MR P+ FHY N V E L TD+Y+PL Sbjct: 252 LPQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPL 288 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 100/158 (63%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + L ++VNI++ P+ +A L H SP+ + + A+FI WRKETGLSPV +S+T+G+ + D Sbjct: 125 SELKMNVNIVERPAEKIAYLSHLGSPDKVLETAAQFIAWRKETGLSPVTKSKTYGIPFAD 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + FRFDI GS+ + +P+N YGV GE+ GRYA RH G D I +V+ I R+ Sbjct: 185 PDQTPADEFRFDIAGSIEKAVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRN 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP E+ P+ FHY N V E L TD+Y+ L Sbjct: 245 WLPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLL 282 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/154 (45%), Positives = 93/154 (60%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V+I+ F + +A+L HR SP + SVA F WRK +GLSP+ +S+TF + ++DPA Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSRIMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAVV 191 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E FR D+ V + + DN YGV N L GGRYAV RH G D IS ++ + WLP Sbjct: 192 VAEDFRCDLAAEVMKEVDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEWLPD 251 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE++ AP F Y N V E L TDVY+PL Sbjct: 252 SGEELGDAPCFFQYHNHFPEVAEHELITDVYLPL 285 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 93/157 (59%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N+ +++++++F +A+L HR E + S+ F WRK T SPV ++FG+ +DDP Sbjct: 131 NIVMNIDLVEFDHTLIAVLEHRGPAEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDP 190 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T P FRFD+C V E IPDN G+ N + GR AV RH G L+ I V + +W Sbjct: 191 DTVEPAKFRFDLCAEVKETIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SGE++R P FHYTNL E L TD+Y+PL Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPL 287 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 97/157 (61%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++T+ + I++F VA L H+ P L++ SVA+F WR +G SPV S+TFG+ +D+P Sbjct: 132 SITMQIRIVNFAETHVAALEHQGPPGLVSESVARFRQWRMHSGQSPVASSRTFGIPYDNP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TT AFRF +CG + E + N +GV + GR AV RH G D I T++ + R W Sbjct: 192 DTTPAHAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP+S E++R P+ FHY ++ ++ +TD+YVPL Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPL 288 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/148 (45%), Positives = 88/148 (59%), Gaps = 4/148 (2%) Query: 16 IPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDIC 75 IPVA L HR P L SV +FI WR+ + +P ++T GV +DDP + APE FRFD+C Sbjct: 152 IPVAALEHRGPPATLMASVQRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPEDFRFDVC 211 Query: 76 GSVSEPIPDN----RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 ++ + + GV + GGRYAVARH G D I TV G+ R WLP SGE++R Sbjct: 212 AELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLPGSGERVR 271 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 AP++FHY V E TDVY+PL Sbjct: 272 DAPLVFHYIERVPRVAEHEQVTDVYLPL 299 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV +I+ P+IP+A++PHR +P L++++ FI WRK GLSP + S+TF + +DDP Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPARLSHTLQAFIAWRKRNGLSP-SHSRTFNLVYDDPNEVT 216 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + +RFD+ + +P + G+ + + GRYA AR G D + V + WLP+S Sbjct: 217 DDDYRFDLACEIQGELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLPSS 276 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G + P+LF V+E + TDVY+PLA Sbjct: 277 GYDLADFPLLFERVRFFPDVSEHEMITDVYLPLA 310 >UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4ERY7_9RHOB Length = 232 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/153 (39%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV I + +IPVA++ HR P + ++ +FI+WRK GLSP+N S+TF V DP +T Sbjct: 80 DVTIRETETIPVAIIEHRGPPAGIGATIQRFILWRKAKGLSPLN-SETFNVFHSDPQSTD 138 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 P +R DIC + I ++ GV +G + GGR AV R VG DD+ + R WLP S Sbjct: 139 PREYRLDICVATDRGIDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRDWLPES 198 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 GE+ R P+ V+EQ +++PL Sbjct: 199 GEETRDFPLYCQRIAFFPEVSEQEAVAGLFLPL 231 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MT DV I+DFP PVA++ H P LL ++ +FI WR+ GL P S TF V D Sbjct: 136 MTFTDDDVRIVDFPDTPVAVMRHEGDPALLGDTIRRFIAWRRAAGLPP-RVSATFNVFHD 194 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T E +R D+C + + + N GV++G + GG AV R +G DD+ + Sbjct: 195 DPDDTPAEQYRLDLCAATAR-VASNPDGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYG 253 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG ++R AP + V E TD+++PL+ Sbjct: 254 EWLPRSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLS 293 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQS-QTFGVAWDD 61 +T+++ I + + +A++ H PE + S+ K I W K ++ ++ + FG A+DD Sbjct: 125 KMTMNIVIKNMQARRLAVVEHHGHPEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDD 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TT PEAF+FD+ +V E + V L GRYAVA H G D+I T++G+ R Sbjct: 185 PKTTEPEAFQFDLGITVPEQLKLEG-NVIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE++ P +F Y N V E L T+ +V L Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETELRTECWVFL 281 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 4/160 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N +V +I+F ++ +A L H+ P L+ S+ FI WR+ L P ++S+TF + + DP Sbjct: 128 NTCFNVELIEFHTLSIAYLTHKGHPNQLHRSIQTFIDWRRARALPP-HKSRTFNLLYHDP 186 Query: 63 ATTAPEAFRFDI-CGSVSEPIP--DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 PE +RFDI C + + D ++ ++ GRYA R+ G+ D + ++ + Sbjct: 187 KRVEPEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLF 246 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SGEK+R P+ + V + +D+Y+ L Sbjct: 247 NLWLEQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLAL 286 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 1/153 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + +IDFP +A L H PE + +VA+FI WRK+ G SP S+T+ + ++DP Sbjct: 198 QIQVIDFPRTAIAFLTHEGDPEGVMKTVAQFIQWRKQYGPSP-RTSKTYNILYNDPRDVP 256 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E +RFD+ S+ + + N Y V G + GR A RH G +S ++ + + Sbjct: 257 KEEYRFDVAASIRKVVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLNE 316 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++R AP+ V E D+Y+P+ Sbjct: 317 DYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 18 VAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS 77 VA+ HR PE L+ ++ +FI WRK GLSP + TF + + P + D+C Sbjct: 155 VAIFEHRGDPETLDATIQRFIAWRKAAGLSP-RTNPTFNIWHSERRPPDPADYSMDLCVG 213 Query: 78 V--SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPI 135 V +PI + V GE+ GGR AV R G+ ++ + R WLPASGE+MR PI Sbjct: 214 VGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLYRDWLPASGEEMRDFPI 273 Query: 136 LFHYTNLAEGVTEQRLETDVYVPL 159 L EQ ++++PL Sbjct: 274 YCQRFFL--DAPEQGTAAELFLPL 295 >UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383DF5 Length = 139 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%) Query: 18 VAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS 77 +A++ HR P L+ +V +FI WRK L P +Q TF + + P P FR D+C + Sbjct: 1 MAVMTHRGDPALIAETVGRFIAWRKANHLPP-SQHATFNILYGGPDQVPPAEFRQDLCVA 59 Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA-PIL 136 GV+ G + GGR AV RHVG D + + + WL SGE++R + P L Sbjct: 60 TGGKAVAFGSGVAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLPFL 119 Query: 137 FHYTNLAEGVTEQRLETDVYVPL 159 + LA D+++PL Sbjct: 120 QRFPELA----GHDSPVDIFLPL 138 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 8/158 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMW---RKETGLSPVNQSQTFGVAWDD 61 +D+ I +FP + V + H E + K KE G ++Q G+ +DD Sbjct: 137 AMDIRIEEFPPLDVVFIRHTGPYEECGIAWEKLCSHPDVAKELG----PETQAIGICYDD 192 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + R D+C + + P G+ + GG YAV H G + + + Sbjct: 193 PDITEADKIRMDVCVT-APPSLSPPEGMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGE 251 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP+SG + AP L Y N E V Q L T++ VPL Sbjct: 252 WLPSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPL 289 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 1/152 (0%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V ++D SI +A++ H L+ S+ FI WR+ P+ S++F + + D Sbjct: 145 VTLVDLASIELAVVEHSGPVSNLHGSLQAFIGWRRAMHTPPL-VSRSFNLVYHDVKHVPA 203 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 +R DI + P+ G+ + +L GRYA+ H G + + + WL SG Sbjct: 204 SEYRLDIGAEIGRPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLVNSG 263 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 E + P++ V + + T +Y+ L Sbjct: 264 EPLADFPLVLERVTQFPDVAQHKAVTHIYLGL 295 >UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=Shewanella frigidimarina RepID=Q07ZY4_SHEFN Length = 301 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V+I+ F + +A++ H P LL ++A+FI WR++ LSP N +TF + + P +A Sbjct: 139 VDIVSFDAQSLAVMEHHGDPALLPQTIARFIEWRRQFALSPTN-CRTFNLLYSSPELSAK 197 Query: 68 EAFRFDICGSV---SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 +R DI S+ ++ + + + GR A+ ++ G+ ++ + + R W+ Sbjct: 198 TQYRIDIGVSLNAETQALVSESSQIMLKSIPQGRCAMIKYSGDDIGLTAAIDYLYRDWVN 257 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQR 150 A+ +R P+ ++ + ++ Sbjct: 258 ANDVTLRNYPLFLERLDIGRSTSVEK 283 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 51 QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGE 107 Q+Q G+ +DDP TAP+ R+D C SV PDN + V+ E+ GG Y A G Sbjct: 198 QTQFMGICYDDPEVTAPDKIRYDACISV----PDNVQAEHPVAIREVEGGEYVCAVWKGP 253 Query: 108 LDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +++ + W SG + R AP + Y N EQ L T++ +PL Sbjct: 254 YTGLTNAYAALCGQWGGRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPL 305 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 24/167 (14%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFI----MWRKETGLSPVNQSQTFG--- 56 +TLDV+ +FP+ P A L H V ++ ++R+ ++ ++ + FG Sbjct: 174 MTLDVSTREFPTYPFAFLRH----------VGRYNDIGPVFRRVAAIA--DERRLFGPDT 221 Query: 57 ----VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDIS 112 VA+DDP+ T + R D S+++P D + GE+ GG YAV + G D + Sbjct: 222 KVMMVAYDDPSVTDEQRLRSDAGVSLTDPTVDTGELI-KGEIAGGLYAVTVYKGPYDGLR 280 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + ++ WLP SG + P + Y N E + L T++ VP+ Sbjct: 281 NCYDWLMGSWLPNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPI 327 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 56 GVAWDDPATTAPEAFRFDICGSV-SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT 114 G+ +DDP T + R+D C + + P+ GV EL GG++AV + G + Sbjct: 184 GLPYDDPKITEADKIRYDACLIIHKDAKPNGDVGVK--ELKGGKFAVFLYQGSYKHFADV 241 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + WL SG ++R AP Y + A V+E++L+T+ Y+P+ Sbjct: 242 YDHMFNAWLINSGHELRDAPSREKYISDARRVSEEKLKTEFYIPI 286 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++ V + P++ VA + H P + + F+ W GL P + +FG DD Sbjct: 162 SMQVTLTTLPAVRVAYMRH-VGPYGVSVNQFWTGTFLPWCFAQGLLP--GASSFGRGLDD 218 Query: 62 PATTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 P TAPE R+D V PD+ R S L GGRYA+A G + ++ + Sbjct: 219 PHITAPEHCRYDAMVQV----PDDFVARSPASMATLPGGRYAIAPFEGTVPQLTVAWTEL 274 Query: 119 IRHWLPASGEKMRKAPILFH 138 +R WLPASG K+ P+ H Sbjct: 275 LRDWLPASGMKLDGRPLFEH 294 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 56 GVAWDDPATTAPEAFRFDICGSV--SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 G++ DDP T + R+D C ++ +P+ G+ + GG+YA A H G + +S Sbjct: 176 GISHDDPNITLVDNIRYDACATIVTEMELPE---GIDRKTILGGKYAKALHKGTYEKLSE 232 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTE-QRLETDVYVPL 159 ++ WLP SG ++R P Y N T+ + L+T++Y+P+ Sbjct: 233 AYSYLLLKWLPDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPI 279 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T T V I D ++PV LPH + S ++ G P Q++ FG+ +DD Sbjct: 124 TTATYPVKIRDIAALPVVALPHHGDYMSIGASFSQLETLLTLRGHLPAPQARYFGIYYDD 183 Query: 62 PA--TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 PA TA + ++ P + L GRYAV H G ++ + Sbjct: 184 PAGCPTAQLRAAAAVALGGADATPP----LQTLTLAAGRYAVLEHRGAYAELHRAYDWLY 239 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 R WL S ++ AP L Y N + V Q L T++Y+PL Sbjct: 240 RDWLLNSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 32 YSVAKFIMWRKETGLSPVNQSQT-----FGVAWDDPATTAPEAFRFDICGSVSEPI-PDN 85 Y A W G + N+ T G+ DDPA TA E R+D C + S + P+ Sbjct: 161 YGEAATAAWEALMGFAYKNRLMTGETLMVGIGHDDPAITAEEKIRYDACVTFSGDVKPEG 220 Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 G+ + GGRYAV H G + I WL SG +R P Y N Sbjct: 221 EVGIQT--IAGGRYAVFLHKGAYTGLPEIYRNIFAGWLATSGCTLRDQPCFEVYLNRDPR 278 Query: 146 VTE-QRLETDVYVPL 159 T+ + L T+++VP+ Sbjct: 279 RTKPENLRTEIWVPV 293 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 10/160 (6%) Query: 5 TLDVNIIDFPSIPVAMLPHRC--SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 T+DV I + P VA L H + + + + W GL +T GV+WDDP Sbjct: 169 TMDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPG-VKTLGVSWDDP 227 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARH---VGELDDISHTVWGII 119 T PE R+D C V P + G + E+ GG YAV R G+ + + ++G Sbjct: 228 EVTPPEHCRYDAC-IVIAPGVEVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFG-- 284 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P Y ++ + E + + +P+ Sbjct: 285 -QWLPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPV 323 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%) Query: 3 NLTLDVNIIDFPSIPVAM--LPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + +DV IID P VA L P + + W GLS +G+ +D Sbjct: 168 EIAMDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLS---DQTCYGIGYD 224 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP+ T R+D C V + V L GGRYAVAR G+ + +++ + R Sbjct: 225 DPSLTPASKCRYDACVEVPAHFVASGQ-VDTQTLPGGRYAVARFKGKPEGLANAWMWLTR 283 Query: 121 HWLPASGEKMRKAPIL 136 W+P+SG + P Sbjct: 284 EWMPSSGMQCDDRPCF 299 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 G++ DDP T + RFD+ ++SE P G + GG Y R+ G+ +++ Sbjct: 186 GISQDDPDVTCKDNIRFDLGFTISEKFPSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIY 245 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I+ + S K++ P Y N E + ++R+ TD+Y+PL Sbjct: 246 DWILNQYCIVSKLKLKNNPPWECYLNPFEPIPDKRI-TDIYIPL 288 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 2/156 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + ++ ++++ + V + H + N++ + W GL + ++ + DDP Sbjct: 131 IVMEASVVNLEEMNVVFVRHTGPYKDCNHAWSTLCGWAGPRGLVNAD-ARILALCHDDPD 189 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T + R+D C +V+ + + + + GGRYA H G D+ T + W Sbjct: 190 VTPEDKIRYDACITVAGQT-EVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQWA 248 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P +G + + Y N + + L T+VYVPL Sbjct: 249 PQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPL 284 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGL---SPVNQSQTFGVAWDDPA 63 ++ I ++PS M+ H+ + + W E + V + + +P Sbjct: 132 EIKIEEYPSRECVMITHKGEYLEGMKTFDILVSWLVENNFYSETSVKSIPFITIPYANPL 191 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVG--ELDDISHTVWGIIRH 121 +A +R DI S++ + N G+ +G ++ G +AV +VG E+ H + ++ Sbjct: 192 ESAGSDYRCDIAISINCKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNVLTE 251 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP + + APILF + N V E L T V +P+ Sbjct: 252 WLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPVC 290 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 11/160 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTF-----GVAWD 60 ++V I D P + VA + H P Y+ A W++ + NQ TF GV D Sbjct: 1 MNVRIEDMPDLRVACI-HAPGP----YATAAPQAWQELSAWMGHNQMLTFETLFVGVLGD 55 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P A E+ +D SV + I + Y VS + GG A H G ++ + Sbjct: 56 TPCGLASESTGYDAGVSVPQHIEADGY-VSVRIIAGGPCATIVHKGPHKTLAEVWASLYW 114 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLPASG R+AP + Y N + + L T +++PL+ Sbjct: 115 EWLPASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLS 154 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 15/160 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQ-SQTFGVA---WDD 61 DV+I +A L HR +Y+ + T +S N QT G+A +D+ Sbjct: 121 FDVDIQTTSDKRLAALSHRG-----DYAEGSVAYQKVATIISTGNHWPQTRGMAGVYYDN 175 Query: 62 PATTAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 P T E R G + E IPD G+ +LTGGRYAV G ++ + Sbjct: 176 PEVTPTEDLR-SHAGVLWEGGAIPD---GLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVY 231 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL +S E +R AP HY N L TD+Y+PL Sbjct: 232 GPWLSSSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPL 271 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + D P++ L H S + + + + G P + + G+A+DDP TA Sbjct: 122 VELRDDPALTCIGLRHTGSYSECGQTWGELMAHAAKAGWMP-HVLGSVGLAYDDPDITAA 180 Query: 68 EAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 E R+D C V EP R EL GRYA+ H G+ + I T G+I LP Sbjct: 181 ERLRYDAC-MVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALP 239 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 G ++ P++ Y + V L T++ V Sbjct: 240 FRGVELANEPVIERYLDDPATVPLHELRTEICV 272 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +DV I +A H E + + K W G +++ +GV DDP Sbjct: 1 MDVQIWTLDPAKMAYAEHVGPYEEVGKAWEKLCAWAGPNGHF-NEKTRFYGVYHDDPGQV 59 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R + C ++ + + G+ +GG+YAV H+G + + + WLP Sbjct: 60 PAAELRSEACITLENEV-EVPAGIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWLPQ 118 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE +AP Y N + L T + +PL Sbjct: 119 SGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPL 152 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 13/163 (7%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGL-SPVNQSQTF-GVAWD 60 ++ VN++ +P + +A LPH+ + + S + + GL +P +S + GV +D Sbjct: 122 SVMYSVNLVSYPGLTLAALPHQGDYQRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYD 181 Query: 61 DPATTAPEAFRFDIC----GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 DP R C G+ +P+ + R V ++G +I H Sbjct: 182 DPRQVETGRLRSHACVASKGAPGDPL-------QTLVIPAMRCGVVEYLGPYTEIDHAYD 234 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + WLPASGE+ P+ Y N + L T +Y+PL Sbjct: 235 WMFSEWLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPL 277 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 11/112 (9%) Query: 53 QTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE-----LTGGRYAVARHVGE 107 + FG++ D P ++++ C ++++P+ S GE L G+YA+ + G Sbjct: 183 EMFGISHDHPEIAGDILYQYEACVTLAKPV------ASEGEFVVKTLPAGKYAMFTYQGS 236 Query: 108 LDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + +++ WL S +R+API Y N + E+ L T +++P+ Sbjct: 237 YAQLDTVYNLVLKQWLFNSSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 16/115 (13%) Query: 33 SVAKFIMWRKETGLSPVNQSQTF-GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSN 91 ++ + W E L +N S G+ WD+P TT P+ R+D C +S+ P + V Sbjct: 29 AMERMKRWGAERNL--LNHSAILLGIPWDNPETTPPKNCRYDACLVISQDEPLDDDTVHI 86 Query: 92 GELTGGRYAVARHVGELDDISHTVWGIIRHW------LPASGEKMRKAPILFHYT 140 GE++GG Y V I HT + + W L A G ++ PIL YT Sbjct: 87 GEISGGDYLVC-------TIKHTAQAMQQAWAELMPTLQAKGYQIDDRPILERYT 134 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%) Query: 39 MWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSN-GELTGG 97 M R +T + P + ++DDP+ T E +D+C +V E + + N + GG Sbjct: 165 MERYKTYIKP--DTLLIEKSYDDPSITELEKCIYDLCITVGEDVE-----LENVTTIKGG 217 Query: 98 RYAVARHVGELDDISHTVWGIIRHWLPASGEKM 130 ++AV R G + DI T G+ WLP SG KM Sbjct: 218 KFAVYRFNGYIHDIFVTFQGVFNIWLPRSGYKM 250 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + V I+ + P+ +L + + L + + W GL + Q + +D+P Sbjct: 1 MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL----RGQWMALYYDNPRE 56 Query: 65 TAPEAFRFDIC---GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW-GIIR 120 AP+A R D+ SV+ P YG+ G L GG YA+A V D+ T W + Sbjct: 57 VAPDALRADVALTTASVTLPSDGEAYGIRRGALAGGLYALA-QVRVTDNDFATPWIALFD 115 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 LPA G + P Y + G E LE V V Sbjct: 116 QALPACGYRPDGGPCFERYLSDGRGSGEWLLELGVPV 152 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 51 QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD 110 S++FG+ +DDP + A R C +++ P G+ L G +AV G + Sbjct: 178 HSRSFGIYYDDPTSKDKSALRSHACVTLN-PQQVKEAGLDYLTLEAGNHAVLTFTGPYSE 236 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + WLP SG ++ P Y N + V L T +Y+PLA Sbjct: 237 LEQAYEWFYGEWLPQSGYQLADRPPFEEYLNDPKTVPPSELLTKIYLPLA 286 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT 114 G+ DDP T PE R+D +V E + Y + + YAVA H G + + Sbjct: 50 LGLCHDDPEITPPERIRYDAMVTVPEDFEPDDYVIVRV-IRAREYAVAVHKGPYATLPWS 108 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + WLP SG AP + Y N E L T +Y+PLA Sbjct: 109 WSALYWEWLPVSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLA 154 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 4/134 (2%) Query: 28 ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPI-PDNR 86 E LN + + + + E L + + GV DDP TAPE R D+ +V + P Sbjct: 155 ENLNPAFGRILQFAAENNLM-TDCTACVGVYHDDPDVTAPEKQRADVGVTVDDQFQPTGE 213 Query: 87 YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGV 146 V + G+ AV RH G D + WLP SG + P Y N A + Sbjct: 214 IQVQT--IPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPDSGHEPGDFPAYEIYVNDASQL 271 Query: 147 TEQRLETDVYVPLA 160 + TD+ VPLA Sbjct: 272 PPDQWLTDICVPLA 285 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%) Query: 36 KFIMWRKETGLSPVNQSQTFGVAWDDPAT-TAPEAFRFDICGSVSEPI-PDNRYGVSNGE 93 + + + ++ G+ P +++ F + D P T+PE R +C + S+ + P GV E Sbjct: 204 RLLKYVRKGGI-PDGETEYFTFSRDVPTIITSPEQQRIFVCVNNSDHLEPSGIIGVQTIE 262 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 GG YAV G + I R+WL S ++R + + Y N + V E +L T Sbjct: 263 --GGEYAVFTMYGAYRQLPDVYTYIYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDKLMT 320 Query: 154 DVYVPLA 160 ++Y+P++ Sbjct: 321 EIYIPVS 327 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT 114 FG+ +PA + R+ C ++ +P+ R V+ + GG +AV R G ++ Sbjct: 188 FGLHHSNPAWVELDKCRYVACIAIDKPL-KYRGVVNQMVIPGGLHAVFRLHGVYGELLPQ 246 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + ++ WLPASG K+R P HY + + E D Y+P++ Sbjct: 247 ISMVLEKWLPASGFKLRSTPAYVHYHSNHFVNESEAFELDFYLPIS 292 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 14/159 (8%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV I D P+ + ++ HR + + K GL P + G+ +DDP A Sbjct: 127 DVKIEDQPARRLGVIDHRGPYIQIGEAFEKAGSTVMARGLGP-HLGAMLGIYFDDPENGA 185 Query: 67 PE------AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 E F D ++ P+ + R L GG++A+ H G ++ + Sbjct: 186 AEDLRSAAGFEMDEAAEITPPLREVR-------LEGGKHAILTHTGPYTGLAQAYKYLFG 238 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL +GE R+AP Y N L T + VPL Sbjct: 239 EWLATAGEMPREAPPFELYVNTPMNTAPDDLVTLIGVPL 277 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 6/142 (4%) Query: 6 LDVNIIDFPSIPVAMLPH--RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++V + + P+ VA L H + E + + + W + GL FGV+WD+P Sbjct: 276 MNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLM-RPGVPGFGVSWDNPE 334 Query: 64 TTAPEAFRFDIC---GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 T PE R+D C G + + G+S L GG YA R + + + Sbjct: 335 VTPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMYT 394 Query: 121 HWLPASGEKMRKAPILFHYTNL 142 WLPASG + P Y ++ Sbjct: 395 QWLPASGWQCDDRPGYELYHDM 416 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 53 QTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDIS 112 ++ V++DDP T R ++ ++ +P + VS L GG+YAV + G +S Sbjct: 178 ESICVSYDDPKITEASLQRSEVSLAIHKPAKPSG-EVSCKTLAGGKYAVFFYQGSYTQLS 236 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +V+ W+ S ++R P+ Y N E +L+T++Y+P+ Sbjct: 237 -SVYDAAMRWVVDSEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPV 282 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKM-RKAPILFHYTNLAEGVT 147 + GE+ GGRYAV RH G D+ ++ W PA+G+ + P++ Y + + + Sbjct: 190 LQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPAAGQHIASDRPVILEYYDPSSDIP 249 Query: 148 EQRLETDVYVPLA 160 Q+ D+ +PL+ Sbjct: 250 VQQKRVDICIPLS 262 >UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium RepID=A6LWY8_CLOB8 Length = 151 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 12/158 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPAT 64 +D+NI P +A + L N V + + W KE L +S G+ D+P Sbjct: 1 MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFN-ERSIIIGITQDNPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T P R+D C VS+ ++ G+ GG+Y V + I+HTV I + W+ Sbjct: 60 TEPADCRYDACLVVSDEFDFESKNINIGKTIGGKYCVFK-------INHTVDAIQKAWIE 112 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLET---DVYVPL 159 E ++ + + + E T Q + ++ VP+ Sbjct: 113 IFLELSKRNYKIDDKSKIIERYTMQMISNHYCEICVPI 150 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + I++ P + A + H S + AK MW + L P QS G++ DDPA T Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETYQAWAKLGMWAAQHQLFPPEQS-FIGISLDDPAVT 204 Query: 66 APEAFRFDICGSVSEPI--PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 E R+D C +V + + D + L GG YA D ++ I +WL Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P S L N + + + D+Y+P+ Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPI 300 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 52 SQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRY-GVSNGELTGGRYAVARHVGELDD 110 S++FG+ DD A T R C +V + G G + GRYA H G + Sbjct: 175 SRSFGLYLDDQAQTPAADCRSIACATVPAFMEGKAMDGFEWGSIPAGRYAAVLHTGPYSE 234 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTN 141 + + RHWLPASGE P + Y N Sbjct: 235 LGECWDWLYRHWLPASGEMPGDTPCVEEYLN 265 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 + DP TAPE R + G + P D G ++ GRYAV +H G ++ Sbjct: 183 FSDPDITAPEECR-SLAGMIVSPGLDVAGGFDRFDILAGRYAVLQHKGAYAELPKAYQWF 241 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WL SGE AP + Y N L T++ +PLA Sbjct: 242 YGAWLADSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPLA 283 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 3/114 (2%) Query: 50 NQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRY---GVSNGELTGGRYAVARHVG 106 Q + GV +DDP A R + P+ + VS + GG YAV RH G Sbjct: 201 GQMRMVGVYYDDPGVVAESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRG 260 Query: 107 ELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 D+ + WL SG + AP+ Y N + L T++ +PLA Sbjct: 261 PYSDMRAAYEWLYGTWLVQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPLA 314 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 12/159 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 L V + + V +L R + + L+ + W + G+ + GV D Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDDLDRGFGRIAAWAERAGVIE-HLHALIGVPLSDHRDV 222 Query: 66 APEAFRFDICG-----SVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 + F+ CG +V+ P P + L G +AV RH G + + ++ Sbjct: 223 PAQQHLFE-CGIAFATAVAPPAP-----LHVRVLGEGAHAVLRHTGSYAGLEDALDRLLA 276 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG +R AP+ + Y + E V E L D+ VP+ Sbjct: 277 DWLPGSGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 4/151 (2%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 I + PS +A + H + ++ K +WR E GL Q F + +P + Sbjct: 166 ICEVPSRLMAYIRHHGYDRSIAHTWQKLDLWRFENGLHTQGQ---FALLHSNPCLVPLKD 222 Query: 70 FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEK 129 R+ C + + P R ++ L GG +A G + + I++ W+P SG + Sbjct: 223 CRYVACVEIHK-TPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHSGLR 281 Query: 130 MRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +R PI Y ++ + ++Y+P+ Sbjct: 282 VRTTPIWVAYNKNQFTDSQHEFDLELYIPIG 312 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 7 DVNIIDFPSIPVAMLPH-RCSPELLNY--SVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 DV II S+PV + +L NY S+ K + + L +S+ V P Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201 Query: 64 TTAPEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR-H 121 + E R IC S+ EPI D + + ++ G YAVA H L W + Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSDIGYMSISSGTYAVA-HFEILQSEYGDAWDFLYGE 260 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG R Y N +E + D+Y+P+ Sbjct: 261 WLPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPI 298 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 50 NQSQTFGVAWDDPATTAPEAFRFDICGSVSEPI---PDNRYGVSNGELTGGRYAVARHVG 106 +++ G+++DDP T R+D C +V+E + P+ V + GG+YAV H G Sbjct: 187 EKTEFLGLSYDDPDITPEGKIRYDACFTVNEEVETPPEMGLQV----IPGGKYAVTTHYG 242 Query: 107 ELDDISHTVWGIIRHWLPASGEKMRKA-PILFHYTNLAEGVTEQRLETDVYV 157 + + + WLP+SG +++ P Y + V + T++++ Sbjct: 243 PYEKMHGIYRELYGKWLPSSGYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWL 294 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 18/162 (11%) Query: 10 IIDFPSIPVAMLPH-----RCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 I++ +IPV L + CS Y+ + KE L P ++ +G+A+DD Sbjct: 140 IVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLP-DKEDYWGIAYDDTD 198 Query: 64 TTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGE---LDDISHTVWG 117 T+ E RF C ++ + I N + + +L G YAV H G+ LD T+ Sbjct: 199 ITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETILK 258 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + + + PIL HY N + L T+V++P+ Sbjct: 259 QLPQFY-----SLGETPILEHYLNSPTDTDVKELLTEVWIPI 295 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSN-GELTGGRYAVARHVGELDDISHTVWG 117 +DDP+ T+ + +DIC +V D + N + GG++A+ R G + DI G Sbjct: 182 YDDPSITSLDQCLYDICMTV-----DKNCSLDNVTTIQGGKFALCRFDGLIQDIFAAFQG 236 Query: 118 IIRHWLPASGEKM 130 + WLP SG +M Sbjct: 237 VFNIWLPDSGYEM 249 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 36 KFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELT 95 K I W K+ + N GV D P T E RFD C V +P + +S +L Sbjct: 178 KLIQWAKDKKIYR-NDCFLLGVGHDAPTITPKELLRFDCCIEVDQPF-HSEGKISYQQLE 235 Query: 96 GGRYAVARHVGELD-DISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETD 154 GG++A +VG ++ H + + + P++ Y + + +TD Sbjct: 236 GGQFATVTYVGPYGMNMKHAYQKLYQEIQHNKNIEFVGLPVVEIYRTTTINPSYKLNQTD 295 Query: 155 VYVPL 159 +YVP+ Sbjct: 296 IYVPI 300 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPV--NQSQTFGVAW 59 + ++ ++ +D P I + + PH+ S + + K W G+ + ++ V + Sbjct: 145 STFSVSISQLDTP-IHMVVYPHQGSYMNIGQAFEKLSGW---AGMRQLFDQTTRMMAVYF 200 Query: 60 DDPATTAPEAFRFDICGSVSEP--IPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 DP T PEA + G P +P+ + + ++ G YAV R+ G D+ Sbjct: 201 HDPDNT-PEAELRSLAGITLTPEKVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKW 259 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SG ++ P Y N V L TD+Y+PL Sbjct: 260 FFGTWLAESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPL 301 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 8/157 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ I + P VA + + E + A+ + W + G + G+ WD+P Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGY--LRLGTILGLYWDNPE 58 Query: 64 TTAPEAFRFDICGSVSE-PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TT PE R D C +V + + + GV ++GG+YAV H + W W Sbjct: 59 TTPPEKCRTDACITVPDGTLAEGTIGVQL--ISGGQYAVC-HFEITAEGFQQAWKDAFSW 115 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + P + N E + R D+ +PL Sbjct: 116 FIGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPL 152 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I P++ + H + + + + W + GL ++ G+ +DDP TT Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMKVGDAFERIGAWVGQHGLIGPG-AKMIGIFYDDPDTTP 197 Query: 67 PEAFRFDICGSVSEPIPDNRY--GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 R C ++ PD V + GG YAV H G D+ + WL Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + AP Y N L T++++PL Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPL 292 >UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK Length = 119 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 18/114 (15%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSN-- 91 + F W K G+ N S G+ D+P T E R+D+C +++ + V+ Sbjct: 1 MENFKKWAKLNGV--FNDSIILGIPRDNPEITPKEECRYDVCVVINKD-----FNVTKPA 53 Query: 92 --GELTGGRYAVARHVGELDDISHTV---WGIIRHWLPASGEKMRKAPILFHYT 140 GE +GG+YAV LD V WG I + + +R+ PI+ YT Sbjct: 54 HIGEFSGGKYAVFL----LDHTKEAVSEFWGNIFSEIERNNLSIREQPIIERYT 103 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 12/72 (16%) Query: 54 TFGVAWDDPATTAPEAFRFDICGSV--SEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 G++ D+P T PE+ R+D C + +EPI D V+ EL GG+YA+ ++ Sbjct: 49 VLGISHDNPEITPPESCRYDACIVIEKNEPIDD---FVAESELPGGKYAIY-------EV 98 Query: 112 SHTVWGIIRHWL 123 HT I + W+ Sbjct: 99 EHTAEAIQKAWI 110 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Query: 56 GVAWDDPATTAPEAFRFDICGSV-----SEPIPDNRYGVSNGELTGGRYAVARHVGELDD 110 ++ DDP+ T E RF + ++ + P+P G+ ++ GGRYAV RH G Sbjct: 272 SLSMDDPSITPTEKCRFYLGITLRDDTKARPVP----GIM--QIPGGRYAVFRHTGSYSS 325 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + I W P S + Y N L T++Y+P+ Sbjct: 326 LHKVYRSIYEEWFPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPV 374 >UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter sphaeroides RepID=B9KLE9_RHOSK Length = 156 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Query: 55 FGVAWDDPATTAPEAFRFDICGSVSE------PIPDNRYGVSNGELTGGRYAVARHVGEL 108 GV WD+P P A V E P+ + R L GGR+AV ++ G Sbjct: 52 IGVYWDNPLLAPPGALHSHAGIDVPEGMEIAPPLEELR-------LAGGRHAVLQYTGPY 104 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ WLP + E + P++ Y N A +L T++ VPL Sbjct: 105 SGLARAYRYFFSQWLPEAREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 7/113 (6%) Query: 50 NQSQTFGVAWDDPATTAPEAFRFDICGSVSEPI-PDNRYGVSNG------ELTGGRYAVA 102 Q + GV +DDP +A R + P+ + GV G + GG YAV Sbjct: 160 GQMRMIGVYFDDPGVVEEQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVL 219 Query: 103 RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDV 155 RHVG D+ + WL SG + AP+ Y N + L T++ Sbjct: 220 RHVGPYSDMRAAYDWLYGTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEI 272 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILF 137 V+EP P GV L GG YAV R VG + IS T + WLP SG + + P L Sbjct: 243 VTEPPP----GVVPLRLEGGLYAVHRLVGPYELISPTFRALYSGWLPRSGYRRDQRPGLE 298 Query: 138 HYTNLAEGVTEQRLETDVYVPL 159 Y +L + Q TD+ +P+ Sbjct: 299 LYRSLPDRGALQPCITDLLIPI 320 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 8/159 (5%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + LDV I P + VA + H + + A GL + ++ G+ DDP Sbjct: 135 MELDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPLGLFGPD-TKFIGIGHDDPQ 193 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELT--GGR-YAVARHVGELDDISHTVWGIIR 120 T PE R+D C +V PD+ G + + GGR YA A G +++ + Sbjct: 194 ITPPEKIRYDACMTV----PDSFAGTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWLCG 249 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W P G + P + Y N + +L T++ VP+ Sbjct: 250 VWGPDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPV 288 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 33/71 (46%) Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTE 148 V E+ GG YAV RH G D+S + WLP S + P++ Y N + Sbjct: 208 VERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQSDREADDRPVVEKYLNSPQDTKP 267 Query: 149 QRLETDVYVPL 159 L TD+ +PL Sbjct: 268 SDLLTDLCLPL 278 >UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ Length = 174 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDI 111 +G+A D+P + R+D C + I + +G++ L G YA R G D + Sbjct: 53 YGMAHDNPLDVGSKNCRYDACVEIRSGIEERSLPEFGITT--LPAGPYACRRLTGSYDQM 110 Query: 112 SHTVWGIIRHWLPASGEKM-RKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 TV + + P G + P++ Y + +Q L +D+ VP++ Sbjct: 111 RSTVENVYTRFRPLPGLCFDQNRPVVSIYMDNPNNYADQDLRSDICVPVS 160 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 38 IMWRKETGLS-----PVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNG 92 ++W++ S P Q + D P T E RF + ++ + + G Sbjct: 253 LLWKQLLQFSENYELPSKGCQYVSLTLDYPLITPEEHSRFMVGVTLPQSFETPK-GFGMY 311 Query: 93 ELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLE 152 E++ G YA+ R G +++ I WLP S +R+ Y N E L Sbjct: 312 EISSGEYAIFRFKGLYHELNRVYRHIYLDWLPTSDYTLREPFTFETYINTPEKTPASELI 371 Query: 153 TDVYVPLA 160 T +Y+P+ Sbjct: 372 TAIYIPVT 379 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 39 MWR--KETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPI-PDNRYGVSNGELT 95 +W+ KE L P+ + DDP T E R D+C + + P G L Sbjct: 164 LWQFIKEQKL-PMGDFSPLCIYHDDPKVTPAEKLRTDVCMVMPVQVAPKGDVGFKT--LP 220 Query: 96 GGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDV 155 GRYA+ + G D++ I LP +R P Y N + L T++ Sbjct: 221 AGRYAIFLYKGTYDNLQAVYDTIYGKCLPEMECTLRDEPSAERYLNNPCETAPEELLTEI 280 Query: 156 YVPL 159 Y+P+ Sbjct: 281 YIPV 284 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 ++ D+P T E RF I G + E ++ + E+ GG YAV R+ G D+ Sbjct: 273 SISQDNPWVTPMEQRRFYI-GVLVEGRANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFY 331 Query: 116 WGIIRHWLPASGEKMRKAPILFH-YTNLAEGVTEQRLETDVYVPL 159 I W P S +K P+ F Y N + + L T++Y+P+ Sbjct: 332 KTIYNQWFPYSMYH-QKRPLTFEVYLNAPDETPVEELLTEIYIPI 375 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 9/128 (7%) Query: 6 LDVNIIDFPSIPVAMLPH----RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + V + D P + VA + H + + L K + W GL ++ V DD Sbjct: 172 IQVTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDD 231 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELT--GGRYAVARHVGELDDISHTVWGII 119 P T + R +C SV P+ G++T GG+YAV + + + + Sbjct: 232 PNITDEQKLRTSVCISVP---PNTEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALW 288 Query: 120 RHWLPASG 127 WLP SG Sbjct: 289 SAWLPESG 296 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 8/159 (5%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKF---IMWRKETGLSPVNQSQTFGVAWD 60 L DV I PS +A+LPHR + + + K ++ R+ G ++ + + Sbjct: 142 LMHDVAIKTLPSETLAVLPHRGAYMEIGKAFEKLFGILVSRQVIGQIGAMKA----LYYS 197 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP A + + + + P + E GG YAV R+ G D+ + Sbjct: 198 DPTHVAEDDLQSAAGAVIGDGFPVEA-PLETRETRGGDYAVLRYKGPYADMKWAYEWLYG 256 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SG + AP L Y N L TD+ +PL Sbjct: 257 EWLTQSGREPDDAPCLEVYLNNPRDTAPADLLTDICLPL 295 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 44 TGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSV--SEPIPDNRYGVSNGELTGGRYAV 101 + LS + + +G DDP TAPEA R ++ V + ++ Y + + G YA Sbjct: 172 SQLSMEHLAGLYGYQHDDPRHTAPEACRAEVAVDVGGKAELTEDLYHIV---VPSGLYAR 228 Query: 102 ARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 RH+G+ D I + + + A G + P+ H+ + E V L D+++PL+ Sbjct: 229 LRHLGDYDAIQPAMDTLYLAVIDA-GYALADQPLHLHFLDDPEEVATADLRCDLFLPLS 286 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Query: 52 SQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 ++ FGV D+P + R+D C S+ +N+ + + + GG+YA H G + I Sbjct: 169 TEYFGVIADEPLIKTEISCRYDACSSMQ---SENK-KLPSKIIFGGKYARFIHPGSYETI 224 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAE-GVTEQRLETDVYVPL 159 T I W+ S + PI+ Y +E E+ T + +PL Sbjct: 225 DETYTKIYSRWIFHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPL 273 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 11/128 (8%) Query: 36 KFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSE--PIPDNRYGVSNGE 93 + +MW + P + V +D+P T E R D +V +P+N GV E Sbjct: 32 QLMMWVDSKNIVP---KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTE 88 Query: 94 LTGGRY--AVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRL 151 +TGG+Y AVAR VG DD + + L S +M P Y N G + Sbjct: 89 ITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLN--NGAEDGYW 144 Query: 152 ETDVYVPL 159 + ++YV + Sbjct: 145 DIEMYVAV 152 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE---LDDIS 112 G+ +DDP+ + R + V + N G+ + GGR AV +H G L Sbjct: 180 GIYYDDPSLVPLDELRSHVGAVVPQNFA-NTEGLEPLVIPGGRCAVLKHKGPYAGLRGAF 238 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 H ++G+ WLP SGE+ P + N + L ++++PL Sbjct: 239 HYLYGV---WLPTSGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPL 282 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%) Query: 36 KFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNR----YGVSN 91 + I + + G+ NQ Q F +D+P T R++ + E R Y +++ Sbjct: 202 QLIDFAQTRGIEESNQ-QRFAFCYDNPVLTPLNKCRYEAAIIMPEAAQSTRVNAPYFIAS 260 Query: 92 GELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRL 151 + G+YAV + G + HWLP SG + P++ HY N A + + Sbjct: 261 --IPAGQYAVHYYKGPGAEAIQAHLHFYSHWLPQSGYEPDHFPVIEHYLNDAR--VDGFV 316 Query: 152 ETDVYVPL 159 E ++Y+ L Sbjct: 317 EMEIYIKL 324 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 16/123 (13%) Query: 28 ELLNYSVAKFI--MWRK---ETGLSPVNQ-SQTFGVAWDDPATTAPE---AFRFDICGSV 78 E N A+ I +W++ G P Q S+TFGV + PE +F + I G + Sbjct: 143 ERFNVETAQGIAALWQRFGPYIGRIPGQQGSETFGVCCN------PEDDGSFEY-IAGVL 195 Query: 79 SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFH 138 + G++ L RYAV H G + I T I +HWLP +G + AP Sbjct: 196 VNRAAEVPAGLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLPTAGVQTAAAPEFER 255 Query: 139 YTN 141 Y+ Sbjct: 256 YSE 258 >UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC5_ALKOO Length = 149 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Query: 61 DPATTAPEAFRFDICGSVS--EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 D A F + C V E IP+N + + GRY V + G++ D+ I Sbjct: 55 DSDMDAQGRFHYTACVEVDHFEDIPEN---MEAKAVPEGRYLVYTYSGDIKDLGEFYGNI 111 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLPAS +M P L L + Q E D+Y+P+ Sbjct: 112 FSKWLPASEYEMDYRPQL----ELYDERFMQNGEFDIYIPV 148 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 27 PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNR 86 PE+ + + W GL+ + ++ + DDP T E RF C ++ P D Sbjct: 165 PEIFGEAFGTLMAWAGPRGLA--HGAEMMCLFHDDPQVTDAELMRFSSCLTLRGP-ADVE 221 Query: 87 YGVSNGELTGGRYAVARHVGELDDISHTVWG-IIRHWLPASGEKMRKAPILFHYTNL 142 V + GGRYA H D S W + WLP SG + P Y ++ Sbjct: 222 GEVGKMMVGGGRYACG-HFVITHDQSQAAWEYMFGDWLPLSGYEPENIPCFQLYPSM 277 >UniRef50_B0ESC5 Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0ESC5_ENTDI Length = 1092 Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILF 137 V EP+PD RY + N ++ G Y V G + ++ T+ II+H R+ I+ Sbjct: 970 VIEPLPDGRYAIYNEDILGIDYVVLSAEGLITFVTGTIRSIIQHSETTYSNASRRQGIIS 1029 Query: 138 H-YTNLAEGVT 147 H Y +A +T Sbjct: 1030 HVYNTMASPLT 1040 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%) Query: 55 FGVAWDDPATTAPEAFRFDICGSV---SEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 +G+ D+P R+D C S+ + +P G GG+YA H G + I Sbjct: 176 YGIVADEPLIRENLNCRYDTCSSLQSLTSRLPSKTIG-------GGKYAQFTHYGRYETI 228 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYT---NLAEGVTEQRLETDVYVPL 159 T I W+ +G + P++ YT + + V EQ T +++PL Sbjct: 229 EDTYSQIYSGWILTAGLRFSHTPVIEKYTRHPDNTDSVEEQI--TYIWLPL 277 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 38.5 bits (88), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 29/67 (43%) Query: 93 ELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLE 152 ++ G YA R G I+ + WLPASG + P L HY N L Sbjct: 215 DIPAGLYACHRLAGPYTRINAAFNALYARWLPASGYEPDDRPALEHYLNSPRNAAPAELR 274 Query: 153 TDVYVPL 159 TD+ VP+ Sbjct: 275 TDLLVPV 281 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 43/107 (40%) Query: 53 QTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDIS 112 Q G+ DPA ++R I + + V L GG YAV R +G IS Sbjct: 188 QRVGICVRDPAVKDSFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALIS 247 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T + WLP SG + P L Y +Q TD+ +P+ Sbjct: 248 PTFRALYGGWLPQSGYLRDRRPALELYRLPLVAGLQQTCVTDLMIPI 294 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 22 PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEP 81 P++ EL + K W + L + S+ F + D T + R +C SV Sbjct: 157 PYKRDSELFSNLFQKLYQWADQRRLIS-STSRWFVIYHDFGNETDEDQLRLSVCMSVDRN 215 Query: 82 IP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYT 140 + G+ N L G+YAV + E + + + WLP SG K L HY Sbjct: 216 LAVSGDIGILN--LHEGQYAVGSFMVEPSEYDKAWYYMYGKWLPTSGHKPDDRFSLEHYP 273 Query: 141 NLAEGVTEQRLETDVYVPL 159 + E ++RL ++Y+P+ Sbjct: 274 KVEEQ-GDKRL-VEIYIPI 290 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 220 1e-56 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 216 2e-55 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 203 2e-51 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 199 2e-50 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 198 4e-50 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 198 5e-50 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 197 1e-49 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 189 2e-47 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 184 9e-46 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 183 2e-45 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 179 3e-44 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 178 5e-44 UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo... 177 9e-44 UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 175 4e-43 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 175 6e-43 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 171 6e-42 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 170 1e-41 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 170 2e-41 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 168 6e-41 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 167 9e-41 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 167 1e-40 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 166 2e-40 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 166 3e-40 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 164 1e-39 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 163 1e-39 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 163 2e-39 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 162 3e-39 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 159 3e-38 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 158 4e-38 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 158 5e-38 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 157 1e-37 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 155 4e-37 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 155 5e-37 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 153 2e-36 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 152 3e-36 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 150 2e-35 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 150 2e-35 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 150 2e-35 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 150 2e-35 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 149 3e-35 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 149 4e-35 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 148 5e-35 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 146 1e-34 UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag... 146 2e-34 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 144 1e-33 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 143 2e-33 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 142 3e-33 UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=S... 140 1e-32 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 140 1e-32 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 139 2e-32 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 139 2e-32 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 137 1e-31 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 136 3e-31 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 134 1e-30 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 133 3e-30 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 132 3e-30 UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta... 126 2e-28 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 124 7e-28 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 123 2e-27 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 121 9e-27 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 121 1e-26 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 118 4e-26 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 109 4e-23 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 98 1e-19 UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA... 96 4e-19 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 95 6e-19 Sequences not found previously or not previously below threshold: UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 155 7e-37 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 152 3e-36 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 152 4e-36 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 151 9e-36 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 151 9e-36 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 150 1e-35 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 148 4e-35 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 144 1e-33 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 140 1e-32 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 139 3e-32 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 138 5e-32 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 136 2e-31 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 135 5e-31 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 132 4e-30 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 128 5e-29 UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R... 127 1e-28 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 126 2e-28 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 126 2e-28 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 121 1e-26 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 120 2e-26 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 119 2e-26 UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=... 119 3e-26 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 119 3e-26 UniRef50_D1B3I6 Transcription activator effector binding protein... 119 3e-26 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 118 7e-26 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 116 2e-25 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 109 3e-23 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 109 4e-23 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 109 4e-23 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 109 4e-23 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 108 9e-23 UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ... 106 2e-22 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 105 5e-22 UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta... 103 2e-21 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 101 9e-21 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 100 1e-20 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 100 2e-20 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 100 2e-20 UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r... 100 2e-20 UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 99 4e-20 UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 97 2e-19 UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax... 97 2e-19 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 95 8e-19 UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H... 94 2e-18 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 92 7e-18 UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano... 91 8e-18 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 91 1e-17 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 88 7e-17 UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact... 88 1e-16 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 86 2e-16 UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax... 86 4e-16 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 86 5e-16 UniRef50_C8Q848 Transcription activator effector binding n=1 Tax... 86 5e-16 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 85 7e-16 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 85 1e-15 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 82 7e-15 UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ... 81 8e-15 UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano... 81 8e-15 UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=B... 81 8e-15 UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M... 80 2e-14 UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI... 79 4e-14 UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p... 78 1e-13 UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n... 78 1e-13 UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud... 78 1e-13 UniRef50_A0M275 Effector binding transcriptional activator prote... 76 2e-13 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 76 3e-13 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 74 2e-12 UniRef50_A3XLX8 Probable transcription regulator, MerR family pr... 74 2e-12 UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=S... 74 2e-12 UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n... 73 2e-12 UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=... 73 3e-12 UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax... 73 3e-12 UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax... 73 4e-12 UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re... 72 5e-12 UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia... 72 5e-12 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 71 1e-11 UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID... 71 1e-11 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 71 2e-11 UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta... 70 2e-11 UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud... 70 2e-11 UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepI... 70 3e-11 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 70 3e-11 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 69 4e-11 UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaeros... 69 4e-11 UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba... 69 5e-11 UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellov... 68 1e-10 UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bac... 68 1e-10 UniRef50_D2AZ80 Putative transcriptional regulator, MerR family ... 68 1e-10 UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax... 68 1e-10 UniRef50_C3L2H2 Bacterial transcription activator, effector bind... 67 2e-10 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 67 2e-10 UniRef50_B9QWG5 Bacterial transcription activator, effector bind... 67 2e-10 UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop... 67 2e-10 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 67 2e-10 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 66 3e-10 UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma... 66 3e-10 UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha... 66 5e-10 UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepI... 66 5e-10 UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=C... 66 6e-10 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 65 6e-10 UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M... 65 8e-10 UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu... 65 8e-10 UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A... 64 1e-09 UniRef50_A5V1E8 Transcription activator, effector binding n=1 Ta... 64 1e-09 UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=P... 64 1e-09 UniRef50_Q0W824 Putative transcription regulator (MerR family) n... 64 1e-09 UniRef50_Q28T08 Transcription activator effector binding n=1 Tax... 64 1e-09 UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax... 64 2e-09 UniRef50_Q2CBF8 Putative uncharacterized protein n=1 Tax=Oceanic... 64 2e-09 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 64 2e-09 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 63 2e-09 UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effe... 63 3e-09 UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kyto... 63 3e-09 UniRef50_A4AJI4 Putative uncharacterized protein n=1 Tax=marine ... 63 3e-09 UniRef50_D2R723 Transcription activator effector binding protein... 63 4e-09 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 63 4e-09 UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta... 63 4e-09 UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd... 63 4e-09 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 62 5e-09 UniRef50_UPI0001C318BF transcriptional activator ligand binding ... 62 6e-09 UniRef50_B1I236 Transcription activator, effector binding n=1 Ta... 62 7e-09 UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T... 62 7e-09 UniRef50_C3RJJ6 Transcriptional regulator n=2 Tax=Bacteria RepID... 62 8e-09 UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax... 61 8e-09 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 61 9e-09 UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax... 61 1e-08 UniRef50_C3JZ42 Putative AraC family transcriptional regulator n... 61 1e-08 UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavoba... 61 1e-08 UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=S... 61 1e-08 UniRef50_UPI0001C41F50 transcriptional regulator n=1 Tax=Methano... 61 2e-08 UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato... 61 2e-08 UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax... 60 2e-08 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 60 3e-08 UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID... 59 3e-08 UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1... 59 4e-08 UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales ... 59 5e-08 UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n... 59 6e-08 UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 T... 59 6e-08 UniRef50_C9RC23 Transcriptional activator ligand binding domain ... 59 6e-08 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 58 9e-08 UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod... 58 1e-07 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 58 1e-07 UniRef50_D1A7B1 Transcriptional regulator, MerR family n=1 Tax=T... 58 1e-07 UniRef50_A4QE23 Putative uncharacterized protein n=2 Tax=Coryneb... 58 1e-07 UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax... 58 1e-07 UniRef50_B8I6X2 Transcriptional regulator, MerR family n=26 Tax=... 58 1e-07 UniRef50_D1AKN1 Transcription activator effector binding protein... 57 2e-07 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 57 2e-07 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 57 2e-07 UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u... 57 2e-07 UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M... 56 3e-07 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 56 3e-07 UniRef50_B2IBF7 Transcription activator effector binding n=1 Tax... 56 3e-07 UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptosp... 56 4e-07 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 56 4e-07 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 56 5e-07 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 56 5e-07 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 56 5e-07 UniRef50_D1BDE6 Putative transcription activator n=1 Tax=Sanguib... 55 7e-07 UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichom... 55 7e-07 UniRef50_A4BA46 Transcriptional regulator, AraC family protein n... 55 7e-07 UniRef50_C9XSP3 MerR-family transcriptional regulator n=5 Tax=Cl... 55 8e-07 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 55 8e-07 UniRef50_A1TW06 Transcription activator, effector binding n=2 Ta... 55 9e-07 UniRef50_Q12Q57 Transcription activator, effector binding n=1 Ta... 55 9e-07 UniRef50_Q8A8H8 Putative transcription activator n=9 Tax=Bactero... 55 1e-06 UniRef50_B3RPD1 Putative uncharacterized protein n=1 Tax=Trichop... 54 1e-06 UniRef50_Q81D65 Transcriptional regulator, MerR family n=59 Tax=... 54 1e-06 UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=S... 54 1e-06 UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph... 54 1e-06 UniRef50_D0WQA2 Transcriptional regulator, MerR family n=1 Tax=A... 54 2e-06 UniRef50_B5JDT8 Bacterial transcription activator, effector bind... 54 2e-06 UniRef50_C5DA82 Transcription activator effector binding n=1 Tax... 54 2e-06 UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Ta... 54 2e-06 UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n... 53 3e-06 UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croce... 53 3e-06 UniRef50_Q7UFQ8 Putative uncharacterized protein n=1 Tax=Rhodopi... 53 4e-06 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 53 4e-06 UniRef50_C8NNM0 DNA gyrase inhibitor n=2 Tax=Corynebacterium eff... 53 4e-06 UniRef50_A5ULS6 Transcriptional activator n=2 Tax=Methanobreviba... 53 5e-06 UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=A... 52 5e-06 UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphyl... 52 5e-06 UniRef50_C8X6Z7 Transcriptional activator ligand binding domain ... 52 6e-06 UniRef50_D1Z1K4 Putative uncharacterized protein n=1 Tax=Methano... 52 6e-06 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 220 bits (562), Expect = 1e-56, Method: Composition-based stats. Identities = 157/160 (98%), Positives = 159/160 (99%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MTNLTLDVNIIDFPSIPVAMLPHRC PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD Sbjct: 1 MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT+WGIIR Sbjct: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIR 120 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLET+VYVPLA Sbjct: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA 160 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 87/157 (55%), Positives = 115/157 (73%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++DVNII FP+ +A+L HR SP+L+N + A+FI WRK +GLSPV S T+G+AWDDP Sbjct: 133 TSMDVNIISFPTTRIAVLQHRGSPDLVNTTAARFIAWRKTSGLSPVATSDTWGIAWDDPQ 192 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 TT EAFRFDICG+V+ P+ +N +GV NGE+ GGR AV RH G LD ++++VW + R WL Sbjct: 193 TTPQEAFRFDICGTVAGPVGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRDWL 252 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 PASGE +R P+ F Y N V E L+TD+Y+PLA Sbjct: 253 PASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPLA 289 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 203 bits (516), Expect = 2e-51, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 93/154 (60%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V+I+ F + +A+L HR SP + SVA F WRK +GLSP+ +S+TF + ++DPA Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSRIMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAVV 191 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E FR D+ V + + DN YGV N L GGRYAV RH G D IS ++ + WLP Sbjct: 192 VAEDFRCDLAAEVMKEVDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEWLPD 251 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE++ AP F Y N V E L TDVY+PL Sbjct: 252 SGEELGDAPCFFQYHNHFPEVAEHELITDVYLPL 285 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 93/157 (59%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N+ +++++++F +A+L HR E + S+ F WRK T SPV ++FG+ +DDP Sbjct: 131 NIVMNIDLVEFDHTLIAVLEHRGPAEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDP 190 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T P FRFD+C V E IPDN G+ N + GR AV RH G L+ I V + +W Sbjct: 191 DTVEPAKFRFDLCAEVKETIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SGE++R P FHYTNL E L TD+Y+PL Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPL 287 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 198 bits (505), Expect = 4e-50, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 98/157 (62%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ +DV +I+ P VA L H +PE L + +FI WRK TGLSPV S+T+GV DP Sbjct: 132 DIIVDVKLIELPIQKVAQLEHSGAPEKLMETAKQFIEWRKTTGLSPVAISRTYGVPNGDP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T A E FRF CGSV+E +PDN YGV G L GG YAV RH G D + +++G R W Sbjct: 192 NTMAAEDFRFRFCGSVNEAVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG+ MR P+ FHY N V E L TD+Y+PL Sbjct: 252 LPQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPL 288 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 97/157 (61%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++T+ + I++F VA L H+ P L++ SVA+F WR +G SPV S+TFG+ +D+P Sbjct: 132 SITMQIRIVNFAETHVAALEHQGPPGLVSESVARFRQWRMHSGQSPVASSRTFGIPYDNP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TT AFRF +CG + E + N +GV + GR AV RH G D I T++ + R W Sbjct: 192 DTTPAHAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP+S E++R P+ FHY ++ ++ +TD+YVPL Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPL 288 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 100/158 (63%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + L ++VNI++ P+ +A L H SP+ + + A+FI WRKETGLSPV +S+T+G+ + D Sbjct: 125 SELKMNVNIVERPAEKIAYLSHLGSPDKVLETAAQFIAWRKETGLSPVTKSKTYGIPFAD 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + FRFDI GS+ + +P+N YGV GE+ GRYA RH G D I +V+ I R+ Sbjct: 185 PDQTPADEFRFDIAGSIEKAVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRN 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP E+ P+ FHY N V E L TD+Y+ L Sbjct: 245 WLPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYLLL 282 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MT DV I+DFP PVA++ H P LL ++ +FI WR+ GL P S TF V D Sbjct: 136 MTFTDDDVRIVDFPDTPVAVMRHEGDPALLGDTIRRFIAWRRAAGL-PPRVSATFNVFHD 194 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T E +R D+C + + + N GV++G + GG AV R +G DD+ + Sbjct: 195 DPDDTPAEQYRLDLCAATAR-VASNPDGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYG 253 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG ++R AP + V E TD+++PL+ Sbjct: 254 EWLPRSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLS 293 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 184 bits (467), Expect = 9e-46, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 4/159 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + T+DV I + P VA L H + + + W GL +T GV+WD Sbjct: 167 SATMDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPG-VKTLGVSWD 225 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T PE R+D C ++ P + G + E+ GG YAV R + + Sbjct: 226 DPEVTPPEHCRYDACIVIA-PGVEVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFG 284 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P Y ++ + E + + +P+ Sbjct: 285 QWLPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPV 323 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 183 bits (464), Expect = 2e-45, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV +I+ P+IP+A++PHR +P L++++ FI WRK GLSP + S+TF + +DDP Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPARLSHTLQAFIAWRKRNGLSP-SHSRTFNLVYDDPNEVT 216 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + +RFD+ + +P + G+ + + GRYA AR G D + V + WLP+S Sbjct: 217 DDDYRFDLACEIQGELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLPSS 276 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G + P+LF V+E + TDVY+PLA Sbjct: 277 GYDLADFPLLFERVRFFPDVSEHEMITDVYLPLA 310 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 179 bits (454), Expect = 3e-44, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 8/158 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMW---RKETGLSPVNQSQTFGVAWDD 61 +D+ I +FP + V + H E + K KE G ++Q G+ +DD Sbjct: 137 AMDIRIEEFPPLDVVFIRHTGPYEECGIAWEKLCSHPDVAKELG----PETQAIGICYDD 192 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + R D+C + + P G+ + GG YAV H G + + + Sbjct: 193 PDITEADKIRMDVCVT-APPSLSPPEGMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGE 251 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP+SG + AP L Y N E V Q L T++ VPL Sbjct: 252 WLPSSGREANYAPSLEVYVNSPEEVAPQDLITEIRVPL 289 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 178 bits (453), Expect = 5e-44, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 89/154 (57%), Gaps = 4/154 (2%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 + IPVA L HR P L SV +FI WR+ + +P ++T GV +DDP + APE Sbjct: 146 LRTLDPIPVAALEHRGPPATLMASVQRFIAWRRGSQAAPEPSTRTLGVLYDDPESVAPED 205 Query: 70 FRFDICGSVSEPIPDN----RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 FRFD+C ++ + + GV + GGRYAVARH G D I TV G+ R WLP Sbjct: 206 FRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVMGLYRDWLPG 265 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE++R AP++FHY V E TDVY+PL Sbjct: 266 SGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299 >UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4ERY7_9RHOB Length = 232 Score = 177 bits (450), Expect = 9e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 1/158 (0%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T DV I + +IPVA++ HR P + ++ +FI+WRK GLSP+N S+TF V D Sbjct: 75 TFKADDVTIRETETIPVAIIEHRGPPAGIGATIQRFILWRKAKGLSPLN-SETFNVFHSD 133 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P +T P +R DIC + I ++ GV +G + GGR AV R VG DD+ + R Sbjct: 134 PQSTDPREYRLDICVATDRGIDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRD 193 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE+ R P+ V+EQ +++PL Sbjct: 194 WLPESGEETRDFPLYCQRIAFFPEVSEQEAVAGLFLPL 231 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++ ++++ + V + H + N++ + W GL ++ + DDP Sbjct: 130 EIVMEASVVNLEEMNVVFVRHTGPYKDCNHAWSTLCGWAGPRGLVN-ADARILALCHDDP 188 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R+D C +V+ + + + + GGRYA H G D+ T + W Sbjct: 189 DVTPEDKIRYDACITVAGQT-EVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQW 247 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P +G + + Y N + + L T+VYVPL Sbjct: 248 APQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPL 284 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 175 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQS-QTFGVAWDD 61 +T+++ I + + +A++ H PE + S+ K I W K ++ ++ + FG A+DD Sbjct: 125 KMTMNIVIKNMQARRLAVVEHHGHPEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDD 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TT PEAF+FD+ +V E + V L GRYAVA H G D+I T++G+ R Sbjct: 185 PKTTEPEAFQFDLGITVPEQLKL-EGNVIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRD 243 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE++ P +F Y N V E L T+ +V L Sbjct: 244 WLPNSGEELGDLPCIFCYYNFDHEVAETELRTECWVFL 281 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I I V + H + + K W GL +++ G+++DDP T Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPKVTKAWEKLCGWGFGKGLF-SEKTEFLGLSYDDPDITP 203 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 R+D C +V+E + + + GG+YAV H G + + + WLP+S Sbjct: 204 EGKIRYDACFTVNEEVETPPE-MGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLPSS 262 Query: 127 GEKMRKA-PILFHYTNLAEGVTEQRLETDVYV 157 G +++ P Y + V + T++++ Sbjct: 263 GYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWL 294 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 4/155 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 V + PS +A + E LN + + + + E L + + GV DDP T Sbjct: 133 VRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMT-DCTACVGVYHDDPDVT 191 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 APE R D+ +V + + + G+ AV RH G D + WLP Sbjct: 192 APEKQRADVGVTVDDQFQPTGE-IQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPD 250 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 SG + P Y N A + + TD+ VPLA Sbjct: 251 SGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPLA 285 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPATT 65 ++ + PS A+L H+ + L+ + F W ++G P + + +D + Sbjct: 213 EIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPDSGHEP-GDFPAYEIYVNDASQL 271 Query: 66 APEAFRFDICGSVSE 80 P+ + DIC ++E Sbjct: 272 PPDQWLTDICVPLAE 286 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 170 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +DV I +A H E + + K W G +++ +GV DDP Sbjct: 1 MDVQIWTLDPAKMAYAEHVGPYEEVGKAWEKLCAWAGPNGHFN-EKTRFYGVYHDDPGQV 59 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R + C ++ + + G+ +GG+YAV H+G + + + WLP Sbjct: 60 PAAELRSEACITLENEV-EVPAGIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWLPQ 118 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE +AP Y N + L T + +PL Sbjct: 119 SGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPL 152 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + I++ P + A + H S + AK MW + L P QS G++ DDPA T Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETYQAWAKLGMWAAQHQLFPPEQS-FIGISLDDPAVT 204 Query: 66 APEAFRFDICGSVSEPI--PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 E R+D C +V + + D + L GG YA D ++ I +WL Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P S L N + + + D+Y+P+ Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPI 300 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 167 bits (424), Expect = 9e-41, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 2/159 (1%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + +L L+ + + VA + H + W GL + Q+Q G+ +D Sbjct: 149 LESLGLEPEVKVLAPVRVAFVRHTGPYAQCEAAWKTLCDWAFPQGLV-MAQTQFMGICYD 207 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP TAP+ R+D C SV + + + V+ E+ GG Y A G +++ + Sbjct: 208 DPEVTAPDKIRYDACISVPDNVQA-EHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCG 266 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W SG + R AP + Y N EQ L T++ +PL Sbjct: 267 QWGGRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPL 305 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N +V +I+F ++ +A L H+ P L+ S+ FI WR+ L P ++S+TF + + DP Sbjct: 128 NTCFNVELIEFHTLSIAYLTHKGHPNQLHRSIQTFIDWRRARAL-PPHKSRTFNLLYHDP 186 Query: 63 ATTAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 PE +RFDI D ++ ++ GRYA R+ G+ D + ++ + Sbjct: 187 KRVEPEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLF 246 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SGEK+R P+ + V + +D+Y+ L Sbjct: 247 NLWLEQSGEKLRDFPLFIERVSFFPDVAANKAISDIYLAL 286 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 3/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + ++ ++ +D P I + + PH+ S + + K W L ++ V + D Sbjct: 145 STFSVSISQLDTP-IHMVVYPHQGSYMNIGQAFEKLSGWAGMRQLF-DQTTRMMAVYFHD 202 Query: 62 PATTAPEAFRFDICGSV-SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P T R ++ E +P+ + + ++ G YAV R+ G D+ Sbjct: 203 PDNTPEAELRSLAGITLTPEKVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFG 262 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SG ++ P Y N V L TD+Y+PL Sbjct: 263 TWLAESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPL 301 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 166 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I P++ + H + + + + W + GL ++ G+ +DDP TT Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMKVGDAFERIGAWVGQHGLIGPG-AKMIGIFYDDPDTTP 197 Query: 67 PEAFRFDICGSVSEPIPDNRY--GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 R C ++ PD V + GG YAV H G D+ + WL Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + AP Y N L T++++PL Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPL 292 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 2/156 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +TLDV+ +FP+ P A L H + + E L + VA+DDP+ Sbjct: 174 MTLDVSTREFPTYPFAFLRHVGRYNDIGPVFRRVAAIADERRLFGPDTKVMM-VAYDDPS 232 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T + R D S+++P D + GE+ GG YAV + G D + + ++ WL Sbjct: 233 VTDEQRLRSDAGVSLTDPTVDTGELIK-GEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P SG + P + Y N E + L T++ VP+ Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPI 327 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++V + + P+ VA L H E + + + W + GL FGV+WD+P Sbjct: 275 VMNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPG-VPGFGVSWDNP 333 Query: 63 ATTAPEAFRFDICGSVS---EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 T PE R+D C ++ + + G+S L GG YA R + + + Sbjct: 334 EVTPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMY 393 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 WLPASG + P Y ++ E + + V Sbjct: 394 TQWLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICV 431 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 1/153 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + +IDFP +A L H PE + +VA+FI WRK+ G SP S+T+ + ++DP Sbjct: 198 QIQVIDFPRTAIAFLTHEGDPEGVMKTVAQFIQWRKQYGPSP-RTSKTYNILYNDPRDVP 256 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E +RFD+ S+ + + N Y V G + GR A RH G +S ++ + + Sbjct: 257 KEEYRFDVAASIRKVVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLNE 316 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++R AP+ V E D+Y+P+ Sbjct: 317 DYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 5/161 (3%) Query: 4 LTL-DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T+ +V I I V + H + + W + L Q + GV +DDP Sbjct: 155 MTMREVVIRHVEPIEVLSVDHVGPYMQIGKAFDALFGWLAKHNLL-AGQMRMVGVYYDDP 213 Query: 63 ATTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 A R + P+ + VS + GG YAV RH G D+ + Sbjct: 214 GVVAESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLY 273 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WL SG + AP+ Y N + L T++ +PLA Sbjct: 274 GTWLVQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPLA 314 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V+I F + + L H+ + K + S++FG+ +DDP + Sbjct: 136 VDIEKFNKVELGGLAHQGDYLDIGAVFEKVFVSAGSKQFLN-EHSRSFGIYYDDPTSKDK 194 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 A R C +++ P G+ L G +AV G ++ WLP SG Sbjct: 195 SALRSHACVTLN-PQQVKEAGLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGEWLPQSG 253 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ++ P Y N + V L T +Y+PLA Sbjct: 254 YQLADRPPFEEYLNDPKTVPPSELLTKIYLPLA 286 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYS-VAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++ +++N++D S V + + + + L ++ G++ DD Sbjct: 123 DIKMNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLI-QPETIMIGISHDD 181 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + R+D C ++ + G+ + GG+YA A H G + +S ++ Sbjct: 182 PNITLVDNIRYDACATIVTEMELPE-GIDRKTILGGKYAKALHKGTYEKLSEAYSYLLLK 240 Query: 122 WLPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 WLP SG ++R P Y N + L+T++Y+P+ Sbjct: 241 WLPDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPI 279 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 5/159 (3%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVN--QSQTFGVAWD 60 ++ VN++ +P + +A LPH+ + + S + + GL + GV +D Sbjct: 122 SVMYSVNLVSYPGLTLAALPHQGDYQRIGESFDRLALLAVNQGLIAPHAESGPWIGVYYD 181 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP R C + + + R V ++G +I H + Sbjct: 182 DPRQVETGRLRSHACVASKGA---PGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMFS 238 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLPASGE+ P+ Y N + L T +Y+PL Sbjct: 239 EWLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPL 277 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 4/158 (2%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + + + +F V + + + + + + L ++ G+ DDP Sbjct: 138 IVMKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMT-GETLMVGIGHDDP 196 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 A TA E R+D C + S + V + GGRYAV H G + I W Sbjct: 197 AITAEEKIRYDACVTFSGDVKPEGE-VGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGW 255 Query: 123 LPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 L SG +R P Y N + L T+++VP+ Sbjct: 256 LATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 4/153 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNY--SVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 I+D + + L+Y + K K L + G+ +DDP T Sbjct: 136 KIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKG-IKHIGLPYDDPKITE 194 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + R+D C + + N V EL GG++AV + G + + WL S Sbjct: 195 ADKIRYDACLIIHKDAKPNGD-VGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWLINS 253 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G ++R AP Y + A V+E++L+T+ Y+P+ Sbjct: 254 GHELRDAPSREKYISDARRVSEEKLKTEFYIPI 286 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 7/160 (4%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + +DV IID P VA + + W GLS +G+ +D Sbjct: 168 EIAMDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLS---DQTCYGIGYD 224 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP+ T R+D C V + V L GGRYAVAR G+ + +++ + R Sbjct: 225 DPSLTPASKCRYDACVEVPAHFVASGQ-VDTQTLPGGRYAVARFKGKPEGLANAWMWLTR 283 Query: 121 HWLPASGEKMRKAPILFHYT-NLAEGVTEQRLETDVYVPL 159 W+P+SG + P ++ A D+ +P+ Sbjct: 284 EWMPSSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPV 323 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 155 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 8/162 (4%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + +V I + + + H S + + W + L Q + GV +DDP Sbjct: 114 TMIREVVIRYVEPMEILSVDHVGSYMQIGKAFDALFGWLAKHNLL-AGQMRMIGVYFDDP 172 Query: 63 ATTAPEAFRFDICGSVSEPI-PDNRYGVSNG------ELTGGRYAVARHVGELDDISHTV 115 +A R + P+ + GV G + GG YAV RHVG D+ Sbjct: 173 GVVEEQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAAY 232 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + WL SG + AP+ Y N + L T++ + Sbjct: 233 DWLYGTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICL 274 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 2/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++ DV I + + H + + KF L+ + + D Sbjct: 127 SDTMYDVRIEEMGPAKLVGFEHTGPYTEIGSAFEKFYAEVGPANLASQAMAIAAA-YFSD 185 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TAPE R + G + P D G ++ GRYAV +H G ++ Sbjct: 186 PDITAPEECRS-LAGMIVSPGLDVAGGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGA 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WL SGE AP + Y N L T++ +PLA Sbjct: 245 WLADSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPLA 283 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 5/157 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSP----ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 V + D P + VA + H + L K + W GL ++ V DDP Sbjct: 173 QVTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDP 232 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R +C SV P + V + GG+YAV + + + + W Sbjct: 233 NITDEQKLRTSVCISVP-PNTEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSAW 291 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG + Y N E + ++ VP+ Sbjct: 292 LPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPV 328 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++V I P + VA + + W + + G+ DDP Sbjct: 1 MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQV-TSASTMFLGLCHDDPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T PE R+D +V E + Y + + YAVA H G + + + WLP Sbjct: 60 TPPERIRYDAMVTVPEDFEPDDYVI-VRVIRAREYAVAVHKGPYATLPWSWSALYWEWLP 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 SG AP + Y N E L T +Y+PLA Sbjct: 119 VSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLA 154 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 2/153 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV I PS +A+LPHR + + + K + + + DP A Sbjct: 145 DVAIKTLPSETLAVLPHRGAYMEIGKAFEKLFGILVSRQVIGQ-IGAMKALYYSDPTHVA 203 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + + + + P + E GG YAV R+ G D+ + WL S Sbjct: 204 EDDLQSAAGAVIGDGFP-VEAPLETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLTQS 262 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + AP L Y N L TD+ +PL Sbjct: 263 GREPDDAPCLEVYLNNPRDTAPADLLTDICLPL 295 Score = 40.2 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 19 AMLPHRCSPELLNYSVAKFI-MWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS 77 A+L ++ + ++ W ++G P + + V ++P TAP DIC Sbjct: 236 AVLRYKGPYADMKWAYEWLYGEWLTQSGREP-DDAPCLEVYLNNPRDTAPADLLTDICLP 294 Query: 78 VSEPI 82 + Sbjct: 295 LKPAA 299 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 2/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V I + P + L HR S + +K G+ G+ +DDP+ Sbjct: 133 VEIKEVPERSLQALFHRGSYFEMGVVFSKLAAMLSSRGVIR-KCGPIVGIYYDDPSLVPL 191 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + R + V + N G+ + GGR AV +H G + + WLP SG Sbjct: 192 DELRSHVGAVVPQNF-ANTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYGVWLPTSG 250 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 E+ P + N + L ++++PL Sbjct: 251 EEAADQPCYEVFLNSPTNTAPEDLLVEIFLPL 282 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 2/155 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +V +++F + + H+ + + K M+ L ++++ G+ ++DP Sbjct: 135 KTMFNVEMMEFETTNLLGYEHKGDYMEIGNAFDKLFMFAGSKRLIG-PETRSIGIYYNDP 193 Query: 63 ATTAPEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 + R C SV P + N ++ GR A G ++ Sbjct: 194 GSVDASELRSHACISVEAPRDAEEEQDPENLQIPAGRCATLLFKGPYAELEKPYNWFFGQ 253 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 WLP SG + P Y N L T ++ Sbjct: 254 WLPQSGLEAADFPPFEEYLNDPRTTAPSELLTRIH 288 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 2/157 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + LDV I P + VA + H + + A GL ++ G+ DDP Sbjct: 135 MELDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPLGLFG-PDTKFIGIGHDDPQ 193 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T PE R+D C +V + + + G YA A G +++ + W Sbjct: 194 ITPPEKIRYDACMTVPDSF-AGTPDLPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 P G + P + Y N + +L T++ VP+ Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVG 289 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 DV I D P+ + ++ HR + + K GL P + G+ +DDP Sbjct: 125 MYDVKIEDQPARRLGVIDHRGPYIQIGEAFEKAGSTVMARGLGP-HLGAMLGIYFDDPEN 183 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A E R + E + + L GG++A+ H G ++ + WL Sbjct: 184 GAAEDLRSAAGFEMDEAA-EITPPLREVRLEGGKHAILTHTGPYTGLAQAYKYLFGEWLA 242 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +GE R+AP Y N L T + VPL Sbjct: 243 TAGEMPREAPPFELYVNTPMNTAPDDLVTLIGVPL 277 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + D P++ L H S + + + + G P + + G+A+DDP TA Sbjct: 122 VELRDDPALTCIGLRHTGSYSECGQTWGELMAHAAKAGWMP-HVLGSVGLAYDDPDITAA 180 Query: 68 EAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 E R+D C V EP R EL GRYA+ H G+ + I T G+I LP Sbjct: 181 ERLRYDAC-MVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALP 239 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 G ++ P++ Y + V L T++ V Sbjct: 240 FRGVELANEPVIERYLDDPATVPLHELRTEICV 272 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 23/69 (33%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 + + P+ A+ HR E + + I + DDPAT Sbjct: 206 LRELPAGRYAITLHRGDFESILETYVGLIGRALPFRGVELANEPVIERYLDDPATVPLHE 265 Query: 70 FRFDICGSV 78 R +IC + Sbjct: 266 LRTEICVRI 274 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T T V I D ++PV LPH + S ++ G P Q++ FG+ +DD Sbjct: 124 TTATYPVKIRDIAALPVVALPHHGDYMSIGASFSQLETLLTLRGHLPAPQARYFGIYYDD 183 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 PA R +V+ D + L GRYAV H G ++ + R Sbjct: 184 PAGCPTAQLRAAA--AVALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRD 241 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL S ++ AP L Y N + V Q L T++Y+PL Sbjct: 242 WLLNSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 5/160 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T V + + VA+ HR PE L+ ++ +FI WRK GLSP + TF + + Sbjct: 139 TFTPDQVALREVAPTRVAIFEHRGDPETLDATIQRFIAWRKAAGLSP-RTNPTFNIWHSE 197 Query: 62 PATTAPEAFRFDICGSV--SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 P + D+C V +PI + V GE+ GGR AV R G+ ++ + Sbjct: 198 RRPPDPADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLY 257 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 R WLPASGE+MR PI EQ ++++PL Sbjct: 258 RDWLPASGEEMRDFPIYCQR--FFLDAPEQGTAAELFLPL 295 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 6/156 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ I + P VA + + E + A+ + W + G + G+ WD+P Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGT--ILGLYWDNPE 58 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 TT PE R D C +V + + ++GG+YAV + W Sbjct: 59 TTPPEKCRTDACITVPDGTLA-EGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAF-SWF 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + P + N E + R D+ +PL Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPL 152 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 DV II S+PV + + + L+ S+ K + + L +S+ V P Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201 Query: 64 TTAPEAFRFDICGSVSEPI-PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + E R IC S+ EPI D + + ++ G YAVA + + W Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSDIGYMSISSGTYAVAHFEILQSEYGDAWDFLYGEW 261 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG R Y N +E + D+Y+P+ Sbjct: 262 LPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPI 298 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 2/153 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + I F +IP + H + + G P + + V DDP Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFGQLAARGALP-ERIEMIAVYLDDPTAVP 186 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E R + + D V E+ GG YAV RH G D+S + WLP S Sbjct: 187 LERLRSFAALA-APGGKDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQS 245 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P++ Y N + L TD+ +PL Sbjct: 246 DREADDRPVVEKYLNSPQDTKPSDLLTDLCLPL 278 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 1/152 (0%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V ++D SI +A++ H L+ S+ FI WR+ P+ S++F + + D Sbjct: 145 VTLVDLASIELAVVEHSGPVSNLHGSLQAFIGWRRAMHTPPL-VSRSFNLVYHDVKHVPA 203 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 +R DI + P+ G+ + +L GRYA+ H G + + + WL SG Sbjct: 204 SEYRLDIGAEIGRPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLVNSG 263 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 E + P++ V + + T +Y+ L Sbjct: 264 EPLADFPLVLERVTQFPDVAQHKAVTHIYLGL 295 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 146 bits (370), Expect = 1e-34, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 3/155 (1%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 DV+I +A L HR + + K P + GV +D+P Sbjct: 120 VFDVDIQTTSDKRLAALSHRGDYAEGSVAYQKVATIISTGNHWPQTRG-MAGVYYDNPEV 178 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T E R V G+ +LTGGRYAV G ++ + WL Sbjct: 179 TPTEDLRSHAG--VLWEGGAIPDGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +S E +R AP HY N L TD+Y+PL Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPL 271 >UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383DF5 Length = 139 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 4/142 (2%) Query: 18 VAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS 77 +A++ HR P L+ +V +FI WRK L P +Q TF + + P P FR D+C + Sbjct: 1 MAVMTHRGDPALIAETVGRFIAWRKANHL-PPSQHATFNILYGGPDQVPPAEFRQDLCVA 59 Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILF 137 GV+ G + GGR AV RHVG D + + + WL SGE++R + Sbjct: 60 TGGKAVAFGSGVAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLPFL 119 Query: 138 HYTNLAEGVTEQRLETDVYVPL 159 + D+++PL Sbjct: 120 QR---FPELAGHDSPVDIFLPL 138 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 2/145 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V I++ ++ V M HR + + + S++FG+ DD A T Sbjct: 131 QVEIVERDAVKVLMRHHRGPYMEIGKAFDALRAVQGPQQGVGAP-SRSFGLYLDDQAQTP 189 Query: 67 PEAFRFDICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R C +V + G G + GRYA H G ++ + RHWLPA Sbjct: 190 AADCRSIACATVPAFMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHWLPA 249 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQR 150 SGE P + Y N Sbjct: 250 SGEMPGDTPCVEEYLNAPYDTPPAE 274 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 4/157 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSV----AKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +V I+ +I VA + H + E L + K + + ++ + D Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T R +C ++S+ V + G+YAV D+ I W Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMVIPSGKYAVGHFEICQDEYKGAWDFIYGEW 256 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG K R + Y N + + + D+YVP+ Sbjct: 257 LPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPI 293 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 6/161 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + ++ V + P++ VA + H + + F+ W GL P S FG Sbjct: 159 SFSSMQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASS--FGRGL 216 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 DDP TAPE R+D V + R S L GGRYA+A G + ++ ++ Sbjct: 217 DDPHITAPEHCRYDAMVQVPDDFVA-RSPASMATLPGGRYAIAPFEGTVPQLTVAWTELL 275 Query: 120 RHWLPASGEKMRKAPILFHYTNLAE-GVTEQRLETDVYVPL 159 R WLPASG K+ P+ H A ++ ++ +P+ Sbjct: 276 RDWLPASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPV 316 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 4/153 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 IID P+ + E + + K + + L + FG++ D P Sbjct: 138 KIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLF-YPTMEMFGISHDHPEIAG 196 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 ++++ C ++++P+ V L G+YA+ + G + +++ WL S Sbjct: 197 DILYQYEACVTLAKPVASEGEFV-VKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQWLFNS 255 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +R+API Y N + E+ L T +++P+ Sbjct: 256 SYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288 >UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=Shewanella frigidimarina RepID=Q07ZY4_SHEFN Length = 301 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + + V+I+ F + +A++ H P LL ++A+FI WR++ LSP N +TF + + Sbjct: 133 SEQSYSVDIVSFDAQSLAVMEHHGDPALLPQTIARFIEWRRQFALSPTN-CRTFNLLYSS 191 Query: 62 PATTAPEAFRFDICGSVS---EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 P +A +R DI S++ + + + + GR A+ ++ G+ ++ + + Sbjct: 192 PELSAKTQYRIDIGVSLNAETQALVSESSQIMLKSIPQGRCAMIKYSGDDIGLTAAIDYL 251 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQR--------LETDVYVPL 159 R W+ A+ +R P+ ++ + ++ + +Y+P+ Sbjct: 252 YRDWVNANDVTLRNYPLFLERLDIGRSTSVEKQSGSPLNIQQVLIYLPI 300 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 4/158 (2%) Query: 3 NLTL-DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 L++ +V + D P+ + +PHR + + F L P GV D Sbjct: 122 ELSMHNVTLRDEPARHLVTVPHRGPYAEIGRAFEHFSALANSRNLWPQ-LGPVLGVYLDA 180 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P + R G+ L GG+ AV G ++ + Sbjct: 181 PGEMPEDQLRSYAGAEYRGDGTPE--GLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGG 238 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE P Y N + L T++ +PL Sbjct: 239 WLPQSGETPADQPCYEIYLNDPRATAPEELLTEIVLPL 276 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 4/151 (2%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 I + PS +A + H + ++ K +WR E GL Q F + +P + Sbjct: 166 ICEVPSRLMAYIRHHGYDRSIAHTWQKLDLWRFENGLHTQGQ---FALLHSNPCLVPLKD 222 Query: 70 FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEK 129 R+ C + + P R ++ L GG +A G + + I++ W+P SG + Sbjct: 223 CRYVACVEIHK-TPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHSGLR 281 Query: 130 MRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +R PI Y ++ + ++Y+P+ Sbjct: 282 VRTTPIWVAYNKNQFTDSQHEFDLELYIPIG 312 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++V I D P + VA + + + W + ++ GV D P Sbjct: 1 MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTF-ETLFVGVLGDTPCG 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A E+ +D SV + I + Y VS + GG A H G ++ + WLP Sbjct: 60 LASESTGYDAGVSVPQHIEADGY-VSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWLP 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ASG R+AP + Y N + + L T +++PL+ Sbjct: 119 ASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLS 154 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGV 57 ++++ D+ +I+ + V + + ++ + + + + ++ G+ P +++ F Sbjct: 168 ISDIRQDIRVIE--PVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGI-PDGETEYFTF 224 Query: 58 AWDDPAT-TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D P T+PE R +C + S+ + + + + GG YAV G + Sbjct: 225 SRDVPTIITSPEQQRIFVCVNNSDHLEPSGI-IGVQTIEGGEYAVFTMYGAYRQLPDVYT 283 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 I R+WL S ++R + + Y N + V E +L T++Y+P++ Sbjct: 284 YIYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVS 327 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 4/153 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNY--SVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 I P+ V + +L +Y + + + KE L P+ + DDP T Sbjct: 134 EIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKL-PMGDFSPLCIYHDDPKVTP 192 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E R D+C + + V L GRYA+ + G D++ I LP Sbjct: 193 AEKLRTDVCMVMPVQVAPKGD-VGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYGKCLPEM 251 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +R P Y N + L T++Y+P+ Sbjct: 252 ECTLRDEPSAERYLNNPCETAPEELLTEIYIPV 284 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 138 bits (348), Expect = 5e-32, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 5/158 (3%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++V + PS VA + + + + + + W L ++ +A D+ Sbjct: 188 IMNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWTPDR-ICLSIAHDN 246 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T P R D + + + V+ ++ GG+YA VG+ I + Sbjct: 247 PKVTEPAKCRLDAAIVIPQDFKADGD-VNVTDIAGGKYAAGAWVGDARAIGSAWDQLFGK 305 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG++ P Y ++ +P+ Sbjct: 306 WLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPV 343 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 12/160 (7%) Query: 9 NIIDFPSIPVAMLPHRCSPELLN------YSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 I++ +IPV L + + + + Y+ + KE L P ++ +G+A+DD Sbjct: 139 RIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLP-DKEDYWGIAYDDT 197 Query: 63 ATTAPEAFRFDICGSVSEPI---PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 T+ E RF C ++ + I P + + +L G YAV H G+ + I+ Sbjct: 198 DITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETIL 257 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + LP + + PIL HY N + L T+V++P+ Sbjct: 258 KQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYS----VAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +N+ D P +A L H + ++ W GL S+ + D+P Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R + +V+ P + ++ + G+Y AR D + ++ W Sbjct: 209 EITEDDKLRISLGVTVA-PGTETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG-W 266 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 LP SG + P+ Y + E + ++ + Sbjct: 267 LPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRM 301 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSP---VNQSQTFGVAWDDP 62 ++ I ++PS M+ H+ + + W E V + + +P Sbjct: 131 YEIKIEEYPSRECVMITHKGEYLEGMKTFDILVSWLVENNFYSETSVKSIPFITIPYANP 190 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD--DISHTVWGIIR 120 +A +R DI S++ + N G+ +G ++ G +AV +VG+ + H + ++ Sbjct: 191 LESAGSDYRCDIAISINCKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITNVLT 250 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP + + APILF + N V E L T V +P+ Sbjct: 251 EWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPVC 290 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 16/162 (9%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM-------WRKETGLSPVNQSQTFGV 57 V + D P +A + H + ++ S K W+ G G+ Sbjct: 114 MYGVKVEDAPERRLAAMAHVGAYNGVSKSYEKVAAVFTIRDLWKHARG--------MVGI 165 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 +DDP+T R +++ + + + G AV G + Sbjct: 166 YYDDPSTVPEAELRSYAAVELADDVV-VPDPLEEVLIRGDESAVLVMKGAYTGLQEAYEW 224 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + WLP SG P Y N L T +YVPL Sbjct: 225 LYGQWLPQSGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPL 266 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 5/153 (3%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNY--SVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 I++ + + LNY + + K L ++ V++DDP T Sbjct: 133 KIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKG-IESICVSYDDPKITE 191 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 R ++ ++ +P + VS L GG+YAV + G +S +R W+ S Sbjct: 192 ASLQRSEVSLAIHKPAKPSGE-VSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVVDS 249 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++R P+ Y N E +L+T++Y+P+ Sbjct: 250 EYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPV 282 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 4/152 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPE 68 I + P A + H + + W G S Q FG+ +PA + Sbjct: 145 KITEVPERMAAYVRHVGYNRSIKNAWLILKAWANSEGRSFEVQ---FGLHHSNPAWVELD 201 Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 R+ C ++ +P+ R V+ + GG +AV R G ++ + ++ WLPASG Sbjct: 202 KCRYVACIAIDKPLK-YRGVVNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPASGF 260 Query: 129 KMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 K+R P HY + + E D Y+P++ Sbjct: 261 KLRSTPAYVHYHSNHFVNESEAFELDFYLPIS 292 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 L V + + V +L R + + L+ + W + G+ + GV D Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDDLDRGFGRIAAWAERAGVI-EHLHALIGVPLSDHRDV 222 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + F+ + + + + L G +AV RH G + + ++ WLP Sbjct: 223 PAQQHLFECGIAFATAVAP-PAPLHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWLPG 281 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG +R AP+ + Y + E V E L D+ VP+ Sbjct: 282 SGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 2/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 + + + P + H + + + + K I W + GL N +++ V DDP+ T Sbjct: 163 IEVKEMPDMKAVYCRHMGAFKEIVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDPSVTEL 222 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 R C V + + N + GG+YAV +D + + W SG Sbjct: 223 SKVRQSACIIVEGDVK-GEGEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMCK-WFTESG 280 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + Y N E + D+ +P+ Sbjct: 281 YQQGDGCTYELYHNSHRTHPENKHIVDICIPI 312 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 5/158 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSV----AKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ I++ ++ + S L + + + E L + +Q + D+P Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205 Query: 63 ATTAPEAFRFDICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R IC ++ + I + N + G+Y V + S + Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPSGKYLVGHFDISKSEYSDAWDFMYNE 265 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL K+R + Y N + R D+Y+P+ Sbjct: 266 WLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPI 303 >UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter sphaeroides RepID=B9KLE9_RHOSK Length = 156 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 2/155 (1%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 V+I + +A L H + E + + + +E L GV WD+P Sbjct: 3 MFPVHIRETSPRRLAALRHTGAFEEIGATFGQICQILEERSLLSQAGC-MIGVYWDNPLL 61 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 P A V E + + + L GGR+AV ++ G ++ WLP Sbjct: 62 APPGALHSHAGIDVPEGM-EIAPPLEELRLAGGRHAVLQYTGPYSGLARAYRYFFSQWLP 120 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + E + P++ Y N A +L T++ VPL Sbjct: 121 EAREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 3/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V I P + +A + H ++ K + W + GL + D TA Sbjct: 157 VEIKTLPQLELAYISHIGDQGQ-AHTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITAS 215 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 E R C + EP+ + V + G+ VAR +D+ + WL +G Sbjct: 216 EQVRMSACIVLKEPVSTDGL-VGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLNRNG 273 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 K + Y N + D+ +P+ Sbjct: 274 YKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305 Score = 39.5 bits (91), Expect = 0.039, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + PS + + + + + +W G ++ F + +DP+T Sbjct: 236 VGTMTMPSGKCVVARMELAMDEFGKAWTELFVWLNRNGYKTTERN-CFEIYGNDPSTHPQ 294 Query: 68 EAFRFDICGSVSEP 81 F D+C + Sbjct: 295 HHFIVDLCIPIDGH 308 >UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium RepID=A6LWY8_CLOB8 Length = 151 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 12/158 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D+NI P +A + L N + + W KE L +S G+ D+P Sbjct: 1 MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFN-ERSIIIGITQDNPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T P R+D C VS+ ++ G+ GG+Y V + I+HTV I + W+ Sbjct: 60 TEPADCRYDACLVVSDEFDFESKNINIGKTIGGKYCVFK-------INHTVDAIQKAWIE 112 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLET---DVYVPL 159 E ++ + + + E T Q + ++ VP+ Sbjct: 113 IFLELSKRNYKIDDKSKIIERYTMQMISNHYCEICVPI 150 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 3/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + L L+ I P+ L H+ + + S K + W E +S +Q++ G+ D+ Sbjct: 135 SFLGLEPTIKKIPAFRAVYLRHKGYNKSIALSWQKLMAWGFEHQIS--SQARQIGIHHDN 192 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P+ T R+ V E + E AV G D+ + + Sbjct: 193 PSITPLAECRYIAALEVEEGFRAQGL-LGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHE 251 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG + + P Y + D +P+ Sbjct: 252 WLPQSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPVG 290 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 8/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ I + P +A + N ++ K W E + G++ D+P Sbjct: 1 MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHL-DETAIVLGISHDNPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T PE+ R+D C + + P + + V+ EL GG+YA+ + I I + L Sbjct: 60 TPPESCRYDACIVIEKNEPIDDF-VAESELPGGKYAIYEVEHTAEAIQKAWIEIFSN-LL 117 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S ++ P+ Y ++ VP+ Sbjct: 118 NSDYEIDTRPVFERYMKKMVD----NHLCEICVPI 148 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 6/154 (3%) Query: 11 IDFPSIPVAMLPHRCSPELL-----NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + + H S +LL N + + G++ DDP T Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + RFD+ ++SE P G + GG Y R+ G+ +++ I+ + Sbjct: 196 CKDNIRFDLGFTISEKFPSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYCIV 255 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S K++ P Y N E + ++R TD+Y+PL Sbjct: 256 SKLKLKNNPPWECYLNPFEPIPDKR-ITDIYIPL 288 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL-LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + V I+ + P+ +L + L + + W GL + Q + +D+P Sbjct: 1 MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL----RGQWMALYYDNPRE 56 Query: 65 TAPEAFRFDICGS---VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 AP+A R D+ + V+ P YG+ G L GG YA+A+ +D + + Sbjct: 57 VAPDALRADVALTTASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQ 116 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LPA G + P Y + G ++ VP+ Sbjct: 117 ALPACGYRPDGGPCFERYLSDGRGS--GEWLLELGVPV 152 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 4/154 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V + I VA + + E ++ K I W K+ + N GV D P T Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIYR-NDCFLLGVGHDAPTITP 207 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD-DISHTVWGIIRHWLPA 125 E RFD C V +P + +S +L GG++A +VG ++ H + + Sbjct: 208 KELLRFDCCIEVDQPF-HSEGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQHN 266 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P++ Y + + +TD+YVP+ Sbjct: 267 KNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPI 300 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 7/158 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +DV + + V L E + + + I + + G+ NQ + F +D+P Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQR-FAFCYDNPV 228 Query: 64 TTAPEAFRFDICGSVSEPIPDNR--YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R++ + E R + G+YAV + G + H Sbjct: 229 LTPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSH 288 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P++ HY N A + ++Y+ L Sbjct: 289 WLPQSGYEPDHFPVIEHYLNDARVDGFVEM--EIYIKL 324 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 57/156 (36%), Gaps = 9/156 (5%) Query: 8 VNIIDFPSIPVAMLPHRCS----PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 V + VA + + PE+ + + W GL+ + ++ + DDP Sbjct: 142 VEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGLA--HGAEMMCLFHDDPQ 199 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T E RF C ++ P D V + GGRYA V D + WL Sbjct: 200 VTDAELMRFSSCLTLRGPA-DVEGEVGKMMVGGGRYACGHFVITHDQSQAAWEYMFGDWL 258 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P SG + P Y ++ + + + +P+ Sbjct: 259 PLSGYEPENIPCFQLYPSMTGEMGPHEVV--ICIPV 292 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 8/154 (5%) Query: 9 NIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 I+ P + + + + K + + GL ++ G+++DDP T Sbjct: 131 EILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLT-PSTRWIGISFDDPTVT 189 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E RF C +V + + GRYAV G + I H LP Sbjct: 190 KTEQCRFYACATVEHDVSPQGA-FGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSHPLPT 248 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + R A Y N E+ T +Y+P+ Sbjct: 249 A---FRDATSFEEYLNCEPDTEEKDYVTRIYIPI 279 >UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus RepID=B9J2X1_BACCQ Length = 159 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V I + PS+ VA + S K + W E L P QS G++ D+P Sbjct: 1 MKVIIKNLPSLEVAFIRRTGSYFEPQDHWGKLLNWSIENKLYPPEQS-FIGISLDNPELV 59 Query: 66 APEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A R D C ++ + + V + GG YA+ + +S + WLP Sbjct: 60 ASHMCRHDACVTIPKNFEKEQHEDVQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWLP 119 Query: 125 ASGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPL 159 S L N E +L+ D++V + Sbjct: 120 NSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSI 155 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 4/155 (2%) Query: 9 NIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +I P + L H + + +N + + + L + G DD Sbjct: 135 SIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLL-KEDTHYLGELMDDDEIVK 193 Query: 67 PEAFRFDICGSVSEPIPDNRYGV-SNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E R++ ++ + G + + G+Y H G+ + + I HW+ Sbjct: 194 DENCRYNAAITLPQEAVFEPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHWIVK 253 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + ++ P L Y N + L T++YVP+A Sbjct: 254 NEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPVA 288 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 2/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + +L V I PS VA + H+ + + K W G+ + + + + Sbjct: 127 SEKSLHVKIQTMPSFDVAYVRHKGYDRTIQQAWLKLQAWALGHGV-DFSDQRMIALHHSN 185 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYG-VSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P + C + + R G + + AV G D+ + I Sbjct: 186 PRFVESSQCHYVACLELPKGREFYRSGDIGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYH 245 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W P S + P Y ++R + D VP+ Sbjct: 246 EWFPQSAYEKIALPSFAIYRENHFINADERFDLDFCVPV 284 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ + P A + N ++ + W E L + + G+ WD+P T Sbjct: 1 MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLN-HSAILLGIPWDNPET 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW-- 122 T P+ R+D C +S+ P + V GE++GG Y V I HT + + W Sbjct: 60 TPPKNCRYDACLVISQDEPLDDDTVHIGEISGGDYLVCT-------IKHTAQAMQQAWAE 112 Query: 123 ----LPASGEKMRKAPILFHYTNLAEGVTEQRLE--TDVYVPL 159 L A G ++ PIL Y E L+ ++ VP+ Sbjct: 113 LMPTLQAKGYQIDDRPILERY------TGEMLLKEFCEICVPI 149 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 2/126 (1%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE 93 K + ++ P + ++ DDP+ T E RF + ++ + + Sbjct: 251 WNKLLHHAEQYEADPRYD-KFISLSMDDPSITPTEKCRFYLGITLRDDTKARPVP-GIMQ 308 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 + GGRYAV RH G + I W P S + Y N L T Sbjct: 309 IPGGRYAVFRHTGSYSSLHKVYRSIYEEWFPKSKYHPQSTFSFEMYMNHPSTTETSELLT 368 Query: 154 DVYVPL 159 ++Y+P+ Sbjct: 369 EIYIPV 374 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + + I + I +A + H + + + W + + + + + D+P Sbjct: 144 EMNAQIVITELQEIKLAGVMHIGEFDKAGNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T RF C ++SE I + + L G YAV + D+I + W Sbjct: 204 NVTQTSKLRFSTCITISEDI-NADGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC-IW 261 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + +G + R Y N + +Q+ D+ +PL Sbjct: 262 VIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPL 298 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 11/148 (7%) Query: 15 SIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR 71 + +A + E K + KE L ++ FG+++DDP T + R Sbjct: 141 PMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKL-QSKATRWFGISFDDPTITKKKQCR 199 Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 F C SV++ I + + + G+YAV + G + I G +R Sbjct: 200 FYACASVAQRIKPSGA-IGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR---EKGR-LR 254 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 A Y ++ +Q T +Y+P+ Sbjct: 255 NALSFEEYVTWSDNPAKQ--ITKIYIPI 280 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 4/152 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPE 68 +I+ P I + H+ + + + K W + Q + D+P T E Sbjct: 141 SIVKMPEIKGYYIRHKGYDKSIKKTWQKLQTWIYTNDIKEYKQ---MALHHDNPIITPLE 197 Query: 69 AFRFDICGSVSEPIPDN-RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 ++ + + + + + + + G YA G+ D+ + + WL SG Sbjct: 198 DCQYIAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIESG 257 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P Y + D Y+P+ Sbjct: 258 YETTPNPSYTIYHKNHFLSDDGEFILDYYLPI 289 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 7/160 (4%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYS----VAKFIMWRKETGLSPVNQSQTFGVAW 59 + ++++I ++ +A L +++S + + + E P Q + Sbjct: 222 IQVELSIKKVHNMRIAYL-KLERTNNISHSFSLLWKQLLQFS-ENYELPSKGCQYVSLTL 279 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 D P T E RF + ++ + + G E++ G YA+ R G +++ I Sbjct: 280 DYPLITPEEHSRFMVGVTLPQSF-ETPKGFGMYEISSGEYAIFRFKGLYHELNRVYRHIY 338 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S +R+ Y N E L T +Y+P+ Sbjct: 339 LDWLPTSDYTLREPFTFETYINTPEKTPASELITAIYIPV 378 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 7 DVNIIDFPSIPVAML----PHRC--SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 D +I VA L HR + L + I + K+ L+ + ++ D Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTL---WGQIIEFAKKYNLTDKGF-KYVSISLD 277 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 T + RF I +V + + G + G Y+V G +++ + Sbjct: 278 SLDITEIDKCRFLIGITVPYSM-EVPKGFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYL 336 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S ++R+ Y N + L T++Y+P+ Sbjct: 337 DWLPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPI 375 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 + I + V + + + + F+ R +T + P + ++DDP+ T Sbjct: 135 IIIENLADFKVIYERYIGNYIDIGDNWYSFME-RYKTYIKP--DTLLIEKSYDDPSITEL 191 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 E +D+C +V E + + + GG++AV R G + DI T G+ WLP SG Sbjct: 192 EKCIYDLCITVGEDVELE----NVTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWLPRSG 247 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 KM + L Y N+ + D+ + + Sbjct: 248 YKMDERYGLGIYHNIDRKN--NHVTMDLCIAI 277 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 7/157 (4%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYS----VAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + I ++ + Y+ + + + K L ++ ++ D+P Sbjct: 222 EAKIKRINTLKAVCIE-VGDTFRDKYAYTTIWKQLLHY-KAVHLQNGPGNRFVSISQDNP 279 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T E RF I V E ++ + E+ GG YAV R+ G D+ I W Sbjct: 280 WVTPMEQRRFYIGVLV-EGRANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYNQW 338 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P S ++ Y N + + L T++Y+P+ Sbjct: 339 FPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375 >UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2 Tax=root RepID=YOST_BACSU Length = 149 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 10/156 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + + I + P + +A + + F W + G+ + S G+ DDP+ Sbjct: 1 MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVF--HNSVILGIPQDDPS 58 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T E R+D+ ++E + G+L GG+YAV + +S I + Sbjct: 59 ITPKEECRYDVGVVLNEDF-NVLQPAQVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSE-I 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + MR PI+ YT+ +V VP+ Sbjct: 117 EKNSLTMRGEPIIERYTSQMID----NHLCEVLVPI 148 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 5/152 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V +I+ P+ V L HR + ++ + W + + + G+ +D Sbjct: 135 VRLIEQPAQQVLALRHRGPAATIPHTHRRLR-WL----IGELPGTVWLGMCREDAGDPGS 189 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + ++ G YA R G I+ + WLPASG Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P L HY N L TD+ VP+ Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPV 281 >UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RP02_RHORT Length = 160 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 2/149 (1%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPE 68 ++ P++ A L H + K W G+ ++Q G+++DDP TT E Sbjct: 5 DVRPLPAMIFASLRHIGPYGEAGETFRKITDWAVSEGVMT-PETQILGLSYDDPKTTPAE 63 Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 R+D C ++ P+ G+ L + + H G + + T + Sbjct: 64 ILRYDACVTLKTPV-ALPPGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTL 122 Query: 129 KMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + Y N L T++ V Sbjct: 123 VPIATGAIEIYVNDPATTAPADLITELGV 151 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%) Query: 13 FPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRF 72 P+ M+ H+ E + + K E + + +DPATTAP Sbjct: 88 LPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVPIATGAIEIYVNDPATTAPADLIT 147 Query: 73 DICGSVSEPIP 83 ++ +V E Sbjct: 148 ELGVAVLEGAD 158 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 9/155 (5%) Query: 8 VNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPAT 64 ++ P+ VA + E + + + + ++P T + WD P Sbjct: 151 ASVKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAG---TLSLYWDIPDI 207 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T R DIC + I R ++ + G YAV + + D + T WL Sbjct: 208 TDETRCRTDICIELGPEIHAGRQ-LTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLV 265 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + G P Y D+ +PL Sbjct: 266 SKGLSCDDRPCYEQYH-AGTDPDRDHYVFDICIPL 299 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 L + I+ + + L + + LN + LS + + +G DD Sbjct: 131 AETPLGIEIVAADPLTLTALRNTGAYPELNAVYQRLFDLVFSQ-LSMEHLAGLYGYQHDD 189 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TAPEA R ++ V + + + G YA RH+G+ D I + + Sbjct: 190 PRHTAPEACRAEVAVDVGGKAELTED-LYHIVVPSGLYARLRHLGDYDAIQPAMDTLYLA 248 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + +G + P+ H+ + E V L D+++PL+ Sbjct: 249 -VIDAGYALADQPLHLHFLDDPEEVATADLRCDLFLPLS 286 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 12/165 (7%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSV----AKFIMWRKETGLSPVNQSQTFG 56 MT L + I +I + + + + K W + L + S+ F Sbjct: 132 MTIDPLKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLI-SSTSRWFV 190 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D T + R +C SV + + L G+YAV + E + + Sbjct: 191 IYHDFGNETDEDQLRLSVCMSVDRNL-AVSGDIGILNLHEGQYAVGSFMVEPSEYDKAWY 249 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQ--RLETDVYVPL 159 + WLP SG K L HY V EQ + ++Y+P+ Sbjct: 250 YMYGKWLPTSGHKPDDRFSLEHY----PKVEEQGDKRLVEIYIPI 290 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 10/157 (6%) Query: 6 LDVNIIDFPSIPVAMLP---HRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 L+V + + + + + E + I + KE ++ G+++DDP Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQAL-SEDTRFIGLSFDDP 188 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T P+ RF C SV + I + L G+YAV G + + Sbjct: 189 NVTHPDQCRFYACASVGKEIIPSGM-FGTIRLQKGKYAVYTLKGSYAGL----QELYNTI 243 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 R Y + +E + + T +Y+P+ Sbjct: 244 NIDFNYTKRHGMAFEEYVSYSEEDDDTQ-VTKIYIPI 279 >UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFH4_YERRU Length = 159 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 9/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + II+ + V + E + + W + + WD+P T Sbjct: 1 MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSW---HQHHQIPAQTWLALYWDNPET 57 Query: 65 TAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R D+ SV++ + GV + GG YAV R D + + Sbjct: 58 TPAAELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQ 117 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 LPASG + Y N + + + D+Y Sbjct: 118 HLPASGYVPAEGACYEVYLNDGQ--ADGYFDIDIY 150 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 5/138 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T D+ VA + + + W GL+ + + D P Sbjct: 153 MTTDMQTTTLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGLA---DGECLFIYLDSP 209 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R DIC +V + G+ L GG YA+ R W I Sbjct: 210 EITPADKCRTDICLTVPDDTATGN-GIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSA 268 Query: 123 LPASGEKMRKAPILFHYT 140 + A+ ++ P Y Sbjct: 269 VIAAQLEIDDRPCFEQYH 286 Score = 39.5 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 2/85 (2%) Query: 73 DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRK 132 D ++ + L A R GE + W A G + Sbjct: 141 DTAPVINPQEQAMTTDMQTTTLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHG--LAD 198 Query: 133 APILFHYTNLAEGVTEQRLETDVYV 157 LF Y + E + TD+ + Sbjct: 199 GECLFIYLDSPEITPADKCRTDICL 223 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 V++ + VAML H + L + + + G + +Q++ F + PA Sbjct: 114 YPVHLETRAPVTVAMLAHSGECQRLGDTFYQLESLLRLRG-AETSQARAFSI---HPAID 169 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 A + + SV+ + GE+ GGRYAV RH G D+ ++ W PA Sbjct: 170 PLHADK-HVAASVAPEY--AMAPLQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPA 226 Query: 126 SGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +G+ + P++ Y + + + Q+ D+ +PL+ Sbjct: 227 AGQHIASDRPVILEYYDPSSDIPVQQKRVDICIPLS 262 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE-LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ I VA E + + +MW + P + V +D+P Sbjct: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPK---EWVAVYYDNPDE 57 Query: 65 TAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T E R D +V +P+N GV E+TGG+YAVA DD + + Sbjct: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 L S +M P Y N + ++YV Sbjct: 118 LQDSAYEMLPKPCFEVYLNNGAEDGYWDI--EMYV 150 >UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ Length = 174 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 4/149 (2%) Query: 15 SIPVAMLPHRCSPEL-LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFD 73 + + + + ++GL + + +G+A D+P + R+D Sbjct: 13 PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLY-ESIGRGYGMAHDNPLDVGSKNCRYD 71 Query: 74 ICGSVSEPIPDNRYG-VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR- 131 C + I + L G YA R G D + TV + + P G Sbjct: 72 ACVEIRSGIEERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPLA 160 P++ Y + +Q L +D+ VP++ Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPVS 160 >UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK Length = 119 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 8/126 (6%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE 93 + F W K G+ N S G+ D+P T E R+D+C +++ + GE Sbjct: 1 MENFKKWAKLNGVF--NDSIILGIPRDNPEITPKEECRYDVCVVINKDF-NVTKPAHIGE 57 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 +GG+YAV + +S I + + +R+ PI+ YT+ Sbjct: 58 FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMID----NHLC 112 Query: 154 DVYVPL 159 ++ VP+ Sbjct: 113 EILVPI 118 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 9/152 (5%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 + I + V + + L + F + + +DDP+ T+ Sbjct: 134 ILIQELDDFVVIYERYIGNYIELGKNWYDFTE---KYKDYFKEDTLLIERFYDDPSITSL 190 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + +DIC +V + + + + GG++A+ R G + DI G+ WLP SG Sbjct: 191 DQCLYDICMTVDKNCSLD----NVTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPDSG 246 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +M + L Y A + D+ +P+ Sbjct: 247 YEMDERYGLDIY--RAIDWESMHVVMDLCIPI 276 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 7/144 (4%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T++ I+ + +A + ++ W G S N F + D+P Sbjct: 150 VTMETTTIE--AGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCEN--AIF-IYHDNP 204 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T E R DIC V + V GG YA R + + W + Sbjct: 205 EITPDEKCRTDICFRVPADTQASGR-VELQVFPGGSYAYIRQTVKQMNEYGQAWSELMKL 263 Query: 123 LPASGEKMRKAPILFHYTNLAEGV 146 + +G + + P Y + Sbjct: 264 VVDTGLESDERPCFELYHSFDPQT 287 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 2/71 (2%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 R + + G A R G + W A G A +F Y + E Sbjct: 149 RVTMETTTIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENA--IFIYHDNPEI 206 Query: 146 VTEQRLETDVY 156 +++ TD+ Sbjct: 207 TPDEKCRTDIC 217 >UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW30_HALNC Length = 287 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 6/160 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V P + + S + + + F W +TGL Q GV WDDP T Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQVPHYWRVFGAWVTQTGL-DTKQGVFVGVTWDDPDVT 187 Query: 66 APEAFRFDICGSVSEPIP----DNRYGVSNGELTGGRYAVARHVGELDDI-SHTVWGIIR 120 R+D P +++ + GG YA G ++ ++ Sbjct: 188 PKGEIRYDCGFLPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLVC 247 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP+SG ++ P L + + E ++ +P+A Sbjct: 248 QWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPIA 287 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 91.8 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 9 NIIDFPSIPVAMLPHRCSPELL-NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 I+ + +A + + + W GL+ Q + + D+P T P Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLA---QGEWIFIYHDNPEVTPP 195 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDISHTVWGIIRHWLPAS 126 R DI +V V + GRYA +R++ + + A+ Sbjct: 196 AQCRTDIGVTVPAGTV-GAGEVEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGD-IVAA 253 Query: 127 GEKMRKAPILFHYTNLAEGV 146 G P Y +++ Sbjct: 254 GLAFGDGPCFELYHSVSNDP 273 >UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26725_METTH Length = 173 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 5/157 (3%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++++ I VA + R S E + +++ W + GL + +G ++ P Sbjct: 18 EVFMEISEKMVEGIRVAYIECRGSYERIPEYISEVAGWVLKNGL--QMTGRVYGTYYNTP 75 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 E ++I S++ + V L R A H G ++ + +I + Sbjct: 76 EEVDEEELLYEIGVSIAGEAEADER-VKIKNLPSHRVIAALHEGPYTEVGPVIHALIEYA 134 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + G ++ P+ Y N V E L T+V +P+ Sbjct: 135 MEN-GYEI-TGPVTEVYLNSPLEVDESELLTEVQIPV 169 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 22/172 (12%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V +++ + V H + + + + Q G+ D T Sbjct: 154 SVEVVELAPLDVLCQRHDGPVGTIAQTFRTLMTTLRCNQ--NPQLQQRVGICGRD--ATV 209 Query: 67 PEAFRFDICGSVSEP------------------IPDNRYGVSNGELTGGRYAVARHVGEL 108 FR+ + + + GV L GG YAV R VG Sbjct: 210 ASGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPY 269 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + IS T + WLP SG + + P L Y +L + Q TD+ +P+ Sbjct: 270 ELISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPIC 321 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 ++I V + L +F K+ + +DDP+ T+ Sbjct: 134 ISIEIINDQFVIYERRIGNYNELIEKWEEFTDKYKK---YIDENTVFLERTFDDPSITSA 190 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + +DIC +V + V + GG++AV + G + I + + W P Sbjct: 191 DKCIYDICMTVDKNCDVENTCV----IPGGKFAVYHYKGFPEQIYTAYQNMFQVWFPVVK 246 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +++ Y + L D+ +P+ Sbjct: 247 KRIDNRYGFDIYNKIDCDSMYMEL--DICIPI 276 >UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae RepID=A1JN27_YERE8 Length = 157 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 9/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + II+ + + E + + + + + + WD+P T Sbjct: 1 MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKD---WLVLYWDNPET 57 Query: 65 TAPEAFRFDICGSVSEPI---PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P R D+ SV++ P+ + + G YAV DD + + Sbjct: 58 NPPAELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQ 117 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 LP SG + + Y N + + D+Y Sbjct: 118 HLPQSGYRPTEGACYEVYLNDGR--ADGYFDIDIY 150 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 2/122 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V + FPS PV + S L+ + +F G P+ +Q G+ D+P T Sbjct: 171 QVRVESFPSQPVLAMRFYGSYALVEDNWRRFAECLDRAG-FPLADAQAVGIVQDNPEITP 229 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + R+D C V +S L R+A H I I W P S Sbjct: 230 NDLVRYD-CAIVDAGFDREHPALSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGPRS 288 Query: 127 GE 128 GE Sbjct: 289 GE 290 >UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DEF0_PECCP Length = 154 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 10/154 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + + I S+ V L E + + + W +E LS ++ WDDP+ Sbjct: 1 MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSID---KSLAFYWDDPSK 57 Query: 65 TAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + R D+ + E G+ + GG YAV + E D + + Sbjct: 58 VEADELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA- 116 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 + A G Y + + +++ Sbjct: 117 INAQGYCPAGDICYESYLCDGSN---GKWDIEIW 147 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 49/156 (31%), Gaps = 7/156 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 V + D P V L E + + + + W ++ G V Q G WD P Sbjct: 146 FSVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAG---VEHHQWLGYLWDQPR 202 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 + R+D+ V+ GV + A G L + WL Sbjct: 203 LASAADCRYDVAVEVTHGRHCGEIGVFR--FPPMKVAEVVIRGGLALEMRAFGWVRDTWL 260 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 PASG P + L + E +P+ Sbjct: 261 PASGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPI 296 >UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b RepID=C8Q848_9ENTR Length = 153 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + +I++ P+ + E + A+ W L Q + + + +P Sbjct: 1 MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWVARHAL----QGEWMAIYYGNPQV 56 Query: 65 TAPEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 P+ + +V G+ +G L GG Y + +D Sbjct: 57 VPPQELSVETVLTVPADFALAVGEGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQ 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S ++ P HY + ++Y+P+ Sbjct: 117 QRSDWQVDDRPCYEHYLSDGSQS--GNWLLNMYIPV 150 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 10/132 (7%) Query: 29 LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYG 88 + F+ P + +G+ D+P R+D C S + Sbjct: 155 EIESQWDTFLQ-----NEFPEQGNDFYGIVADEPLIRENLNCRYDTCSS----LQSLTSR 205 Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGV-T 147 + + + GG+YA H G + I T I W+ +G + P++ YT + + Sbjct: 206 LPSKTIGGGKYAQFTHYGRYETIEDTYSQIYSGWILTAGLRFSHTPVIEKYTRHPDNTDS 265 Query: 148 EQRLETDVYVPL 159 + T +++PL Sbjct: 266 VEEQITYIWLPL 277 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 54/154 (35%), Gaps = 6/154 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRK--ETGLSPVNQSQTFGVAWDDPATT 65 V + + V L H + + + + E + G+ DPA Sbjct: 145 VELTEIAPFDVLSLRHDGPVATIGQTFRSLMTMLRCDENAVMDQR----VGICVRDPAVK 200 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 ++R I + + V L GG YAV R +G IS T + WLP Sbjct: 201 DSFSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQ 260 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + P L Y +Q TD+ +P+ Sbjct: 261 SGYLRDRRPALELYRLPLVAGLQQTCVTDLMIPI 294 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 12/161 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 +++ L+ I+ + V E + KF+ + ++ FGV Sbjct: 122 SDVLLEPEIVYLKPMQVYYQSTNTYYNNEEIEVLWEKFME-----NKFHDSGTEYFGVIA 176 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 D+P + R+D C S + + + + GG+YA H G + I T I Sbjct: 177 DEPLIKTEISCRYDACSS----MQSENKKLPSKIIFGGKYARFIHPGSYETIDETYTKIY 232 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVT-EQRLETDVYVPL 159 W+ S + PI+ Y +E E+ T + +PL Sbjct: 233 SRWIFHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPL 273 >UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP Length = 289 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 16/161 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + + + + + L H+ L+ S+ K + W GL ++ V Sbjct: 1 MNYTFELKELHATHIVYLHHQGDMSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH--- 57 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 + DI +V + + + +S G L+GG YA+ D+I + Sbjct: 58 --EGKELSVDIGLTVPQEV-EGENEISKGLLSGGLYAIGHFEIGTDEIPAAWSLMYT--- 111 Query: 124 PASGEKMRKAPI----LFHYTNLA-EGVTEQRLETDVYVPL 159 S + + P Y ++ + + + D+ +P+ Sbjct: 112 LTSKHQCK--PCAGKSFEIYQSIPLDQHPQDKCMIDLCIPV 150 >UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46A44_METBF Length = 321 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 5/154 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ + VA + H E + + + W K+ L F V + P Sbjct: 1 MEIKLKIVEEHQVASISHEGLVEEMEEIIGELAGWIKQKRLKITQ--PPFAVYYTSPTEV 58 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 PE +++I + V + + A H G +I +++H + Sbjct: 59 PPEKMQYEIGIPFQGDT-NGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMMQH-IIE 116 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG +M AP Y N V + L T+V P+ Sbjct: 117 SGYEMIGAPR-EAYINTPREVPDNELLTEVVFPV 149 >UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=Bacteria RepID=D1ARF9_SEBTE Length = 267 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 18/157 (11%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVA---WDDPA 63 V+I + + L + + + + + ++ +T G D Sbjct: 124 QVSITETQPKNILFLRQKMNVSDYGGYLGRLYE------IIMKDKYKTIGAPLSIHHDKE 177 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 PE + +I V + EL+GG A + G +++ +I W+ Sbjct: 178 F-DPENYDIEIAVPVEDKTE------KTRELSGGLCATVLYKGPYSNLTSVYAKLI-QWI 229 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G K+ AP Y + T++Y P+A Sbjct: 230 ETEGYKITNAP-YEIYLTNPGTTAPENYMTEIYFPVA 265 >UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FQG5_METHJ Length = 279 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 21/171 (12%) Query: 1 MTNLTLDV---NIIDFPSIPVAMLPHRCSPEL-LNYSVAKFIMW--RKETGLSPVNQSQT 54 M ++ V + D S+ V + + + E + + + + GL V+ + Sbjct: 118 MEMFSMIVAEPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGP 177 Query: 55 F-GVAWDDPATTAPEAFR-FDICGSVSEPI----PDNRYGVSNGELTGGRYAVARHVGEL 108 F + D +R D V+ P+ PD G++ + GGR+A A H G Sbjct: 178 FMTIYHD-------GEYRESDADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPY 230 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 D + + W G + + AP +Y N + V E+ L T++ +P+ Sbjct: 231 QDAHESWGKLY-EWTAKQGYEPK-APCRDNYLNDPDDVPEEELLTELLIPV 279 >UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2 Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG Length = 151 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 19/158 (12%) Query: 8 VNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V+I VA + F W K GL S G+A D+P Sbjct: 6 VHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLF--EGSTILGIALDNPQNVP 63 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDIS-HTVWGIIRHWLPA 125 R+D+C +++ N + L +YA+ +I+ + + + + Sbjct: 64 DANCRYDVCLIINKEHLKNNR-IKQRPLPSIKYAIF--KIPHTEIAINEFYKKLNQIICE 120 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLET----DVYVPL 159 K+ PI+ Y +Q+L + ++ +P+ Sbjct: 121 KQLKVLNKPIIERY--------KQKLVSLGFCEILIPI 150 >UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus RepID=A8FC61_BACP2 Length = 149 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 12/157 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSP-VNQSQTFGVAWDDP 62 ++ I ++ + + ++ + +F W + L+ + + +GV DDP Sbjct: 1 MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 PE R+D+ + V + GG+YAV + + + W + Sbjct: 61 GKITPEKCRYDLMLMTNRDF-SKDQMVQTRHVEGGKYAVFTVTHTTEKV-NLFWSQLPQM 118 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + MR A I+ Y E+ + +P+ Sbjct: 119 IQNNQLNMRPASIMERYR-------EEEGMCEFLLPI 148 >UniRef50_Q2BBL2 Transcriptional regulator, AraC family protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BBL2_9BACI Length = 311 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 9/134 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V I+ P E + + W L TFGV ++P T Sbjct: 153 VRTIELPVCATVNRQSVGPYTEGIPDAWEDLYHWTTSRELM-KPDPFTFGVPRNNPYITP 211 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD-----DISHTVWGIIRH 121 PE R+D ++ + GG++ V +D + + Sbjct: 212 PEKTRYDCRIAIDQDKIPEGEPAFL--FKGGKHVVYEFDEPVDYSERGRLIECYSELYSF 269 Query: 122 WLPASGEKMRKAPI 135 WLP SG + P+ Sbjct: 270 WLPRSGYRYLDNPV 283 >UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I6P7_PSEE4 Length = 165 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 10/148 (6%) Query: 15 SIPVAMLPHRCSPELLNYS---VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR 71 ++ +A L +R L +F W + + ++GV +P AF Sbjct: 22 TLHLAGLSNRYDFSRLAELKLLWQRFAPWLGR--VPGQHGHDSYGVCH-NPD--GQGAFD 76 Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 + V+ G + L YAV H G L+ I T I WLPASG++ Sbjct: 77 YLAGVEVTGAATLPE-GFTTLVLAPQHYAVFEHRGSLECIKTTFDAIFTQWLPASGKRQA 135 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 A + Y + Q L ++++PL Sbjct: 136 DAAVFERYPAGYDPTAPQALM-EIWIPL 162 >UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M275_GRAFK Length = 163 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%) Query: 75 CGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAP 134 + + G+ E+ G+YAV H G + + T I WLP S + P Sbjct: 76 AATEVSDFKEIPKGLEKLEIPAGKYAVFIHKGTASEFAETSNYIFNEWLPNSDYDLDDRP 135 Query: 135 ILFHYTNLAEGVTEQRLETDVYVPL 159 +G + D+++P+ Sbjct: 136 HFEVLGADYKGPENPDSKEDIWIPI 160 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE 93 +F + + S+TFGV +P +F + V+ + G++ Sbjct: 157 WQRFGPYIGR--IPGQQGSETFGVCC-NPE--DDGSFEYIAGVLVNRAA-EVPAGLTLQR 210 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 L RYAV H G + I T I +HWLP +G + AP Y+ + + Sbjct: 211 LAAHRYAVFLHEGHISSIHETFNAIFQHWLPTAGVQTAAAPEFERYSEDFDPMAGTG-RV 269 Query: 154 DVYVPL 159 +++VPL Sbjct: 270 EIWVPL 275 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 11/158 (6%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQS-QTFGVAWDDPATTAP- 67 + + VA + + +++ W + GL+ Q+ + FG +++P+ +P Sbjct: 139 LKEMEPTRVAYFCYYG-KQPEHHAFTVMAQWLNKNGLNVNEQNLRIFG--YNNPSPASPD 195 Query: 68 -EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA-RHVGELDDISHTV---WGIIRHW 122 E + +++C +V++ I N V L GG YAV G+ DI + W +W Sbjct: 196 EEEYGYEVCATVADNIVVNDDLVKEKVLGGGLYAVTNVRRGQDGDIGGEIIKAWSRFNNW 255 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 L S L + + D+Y+P+A Sbjct: 256 LSDSKYVYGGHQWLEEHL-GFDDNANHIGGIDLYMPIA 292 Score = 44.9 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 8/125 (6%) Query: 37 FIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTG 96 F W G + F +D F + I +V + + E G Sbjct: 330 FFKWADSQGFFNDTKPHRFFAYYDHERI-GHNDFFYKIHVTVDREFSTDNPYIKLEEFKG 388 Query: 97 GRYAVARHVGELDDISHTVWGIIRHWLP-ASGEKMRKAPILFHY-TNLAEGVTEQRLETD 154 G YA+ + + WG WL + Y N E + + Sbjct: 389 GYYAITKAKYSYNGW---AWGEFLKWLSKNKEFDLGNYWFFEEYKLNKPELDMDTEVV-- 443 Query: 155 VYVPL 159 +++P+ Sbjct: 444 LHMPI 448 >UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLX8_9FLAO Length = 161 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 9/90 (10%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 V++ G+ + GG YAV HVG + + T I WLP SG K+ K Sbjct: 74 AAVEVTD-FDTVPEGMQTKTIAGGLYAVFTHVGPVKEFVETSNYIYGTWLPQSGYKLDKR 132 Query: 134 PILFH----YTNLAEGVTEQRLETDVYVPL 159 Y E ++++P+ Sbjct: 133 AHFERLGEKYY--GPEHPESE--EEIWLPI 158 >UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=Salinispora RepID=A4XAI8_SALTO Length = 274 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET--GLSPVNQSQTFGVAWDD 61 + DV + + ++PVA L S + + + + + + F V D Sbjct: 116 MPYDVIVKEVETVPVASLTLHTSLDAIGADMGRGFGTVVDAIGNAGTEANGKPFVVYHDV 175 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 +IC V V EL GG A H G +IS + Sbjct: 176 IDEQTTGDI--EICIPVPAGTVLPSGPVRYRELRGGPIASTVHRGPYQEISPAYHVVTG- 232 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W+ G P Y N + V+ L T+V P+ Sbjct: 233 WIEQEGVHPAG-PPREVYLNDPQTVSPAELLTEVQFPI 269 >UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8N6_BORPD Length = 291 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 6/140 (4%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVN--QSQTFGVAWDDPATT 65 V + + P + + F R+ + FG+ +D P Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDF---RRLFAHLRSDLLTGPFFGLTYDTPMFV 196 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R+ V L GGR A+ D + ++ WLP Sbjct: 197 PTPFMRYYCGVQVPPGFGPKPKDAFEITLPGGRIAMCEAHCTADGLPALYANLLDQWLPR 256 Query: 126 SGEKMRKAPILFHYTNLAEG 145 SG +R + Sbjct: 257 SGYSLRAS-CFAERFETFPT 275 >UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH Length = 278 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 1 MTNLTLDVN--------IIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVN 50 M N+ ++ + + P+ + + +R S + + +++ R++ VN Sbjct: 114 MENINMNSTQGAAVEPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLP-REDEIRGRVN 172 Query: 51 QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD 110 ++G+ FR+ V + P G+ + + RYAV H G + Sbjct: 173 HEVSYGLCL----PLEDGEFRYIAGVEVEKGTP-VPEGMVSVTVAAARYAVLTHTGPVAG 227 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ++ T LP SG + P Y G + D+Y+ +A Sbjct: 228 LNATFRKACSRDLPESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSIA 277 >UniRef50_B8GJM5 Transcription activator effector binding n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GJM5_METPE Length = 120 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 9/103 (8%) Query: 58 AWDDPAT-TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 +DD R C +V++P + + GG + + G + Sbjct: 24 LYDDRGLLVPESKDRITGCVAVTDPA------IEVKTIPGGSHLTLVYQGAYPGLHEAWS 77 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I + G ++ P Y N V E+ L T++++P+ Sbjct: 78 RIF-VYQEEKGYRIAG-PGRELYLNDPAQVPEEDLLTELHLPI 118 >UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC5_ALKOO Length = 149 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 7/106 (6%) Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 +G+ D A F + C V + D + + GRY V + G++ D+ Sbjct: 50 YYGICDSDMD--AQGRFHYTACVEV-DHFEDIPENMEAKAVPEGRYLVYTYSGDIKDLGE 106 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLPAS +M P L Y E D+Y+P+ Sbjct: 107 FYGNIFSKWLPASEYEMDYRPQLELYDERFMQNGE----FDIYIPV 148 >UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5 Length = 275 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 15/160 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 ++ + + + V + S + + + K + GL P+ + + Sbjct: 122 FNIILKEREPLTVLSIRDNISMDYIGSLIGKIYENVYKNGLKPIGN--IMSIYY---LQN 176 Query: 66 APEAFRFD-----ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 E F D +C V + N +S + GG +A VG +IS ++ Sbjct: 177 EEEDFNHDNADVEVCIPVDKEFSSNE--ISTRIMEGGLHAYTTFVGPYSEISQAYGAMM- 233 Query: 121 HWLPASGEKMRKAPILFHYTNLAEG-VTEQRLETDVYVPL 159 W+ + K+ P Y E Q T+VY P+ Sbjct: 234 EWVKHNKYKI-SRPPFEKYIKGPEEGCNPQDFVTEVYFPV 272 >UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKN8_9FIRM Length = 167 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 25/159 (15%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYS-VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 I +F + +A + N + F ++ L N S G+A D+PA T Sbjct: 23 KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSN-SIILGIALDNPADTDR 81 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + R+D+ VS + + ++ G YAV ++ HT + W ++ Sbjct: 82 DKLRYDVGLIVSG---EPNTALDIRKIPDGMYAVF-------ELPHTEQDVAAFW--SNI 129 Query: 128 EKM-------RKAPILFHYTNLAEGVTEQRLETDVYVPL 159 E++ + P++ Y+ + + +PL Sbjct: 130 EQLVGDLTVDKAKPMIERYSAD----KVAKHLCEFCIPL 164 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 71.4 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 13/166 (7%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLS-----PVNQSQTFGV 57 N+T+ I++ P I VA L L + + + W + L + + FG+ Sbjct: 129 NVTVHPKIVELPEIKVAGLR--GETTLRDNRLREL--WDRANSLYIQIPNRIPNGRAFGI 184 Query: 58 AW---DDPATTAPEAFRF-DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 ++ T + F ++ G + GGRYAV H G L + Sbjct: 185 CEACAENTLYTMNDDILFTEVAGIEVSSFAGLTEPFVQKIIPGGRYAVFTHRGTLGMLPQ 244 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I W + E+M Y G E D+Y+P+ Sbjct: 245 TFDYIWGTWFLTTKEEMDWREDFELYDERFLGYDHPDSEVDLYIPI 290 >UniRef50_Q9K5S9 BH4009 protein n=1 Tax=Bacillus halodurans RepID=Q9K5S9_BACHD Length = 117 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 44 TGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVAR 103 GL +Q+ G++ D P TT PE R+D C +S+ P + V G L G YAV + Sbjct: 2 NGLL-DDQAIILGISQDPPETTPPEKCRYDACIVISDEQPLDGS-VREGILPAGLYAVYK 59 Query: 104 HVGELDDISHTVWGII-------RHWLPA 125 + + W+P+ Sbjct: 60 VKHTAEAMEQAWGTFFPNSKAVGMKWIPS 88 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 G+ E++GG+YA H G + ++ T I W P S ++ L YT G Sbjct: 216 PEGMELKEISGGKYAKFVHKGTVKNLISTYHYIWGVWFPNSSFQLDDRDDLECYTEKFLG 275 Query: 146 VTEQRLETDVYVPL 159 ++ + ++Y P+ Sbjct: 276 AEDEESQIEIYFPI 289 >UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8 Length = 272 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 7/113 (6%) Query: 50 NQSQTFGVAWDDPA-TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL 108 + D ++C V+ + + + EL GG A VG Sbjct: 164 PSGPVMTIYHDKQEFDVENADC--EVCVPVNSRVNAEKNE-NIKELAGGLVASTTFVGPY 220 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPLA 160 + +++ W+ +G + AP Y N + V + + T+V P++ Sbjct: 221 SRLGEAYAKVVK-WIEDNGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPIS 271 >UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa RepID=B7V1U1_PSEA8 Length = 270 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 10/157 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQ-TFGVAWDDP 62 + I++ P+ V + + S + + +FI +E ++ + + ++G+ Sbjct: 120 MHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIP--REHEIAGKHDPEVSYGIC---- 173 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 A F + V E P G+ ++ +YAV H G I+ + I H Sbjct: 174 AQQPNGEFHYVAGFEVQEGWP-VPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSHL 232 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 L G + + +Y G + + D+Y+P+ Sbjct: 233 LAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269 >UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepID=C5QV75_STAEP Length = 154 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETG-LSPVNQSQTFGVAWDDP 62 + I V + + + + F W V + G+A D+P Sbjct: 1 MKYKIEKLDDSSVVYMRMIGTYQSDENFEMMKTFKHWIHTNHYWKYVEKYGVLGIALDNP 60 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 R+D+ + E + N +S GG YAV + +I + + + Sbjct: 61 LHVQSNQCRYDVVLRIDETV--NDQTISKRNFIGGIYAVFKISHTKRNIENFFSHL-ENI 117 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 L + +MR PI+ Y + +Y Sbjct: 118 LNETHLRMRNEPIIERYIEEEGTDKVCEMLVPIY 151 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 76 GSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRK 132 V P+PD ++ L G+YAV H G L+ + T I WLP+SG+++ Sbjct: 208 VMVGSPVPDFSNLPETLAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYGTWLPSSGQRLDD 267 Query: 133 APILFHYTNLAEGVTEQRLETDVYVPL 159 Y + + E +Y+P+ Sbjct: 268 RDDFEVYERKVLAMQDPENEVKLYIPV 294 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 6/157 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++++ II P+I + + ++ + E L+ + F +R ++ + FG+ Sbjct: 127 ISMEPEIITQPAIKLVGIANQYTDEDLSLPRLWSGFAPYRDT--IANRVGDEFFGIYESY 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 F + IC + E G+ E+ YA H G + + T+ I Sbjct: 185 EEAEEGTTFVY-ICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGS 243 Query: 122 WLPASGEKMRKAPILFHYTNLAEG-VTEQRLETDVYV 157 WLP S + + P Y E +L ++ V Sbjct: 244 WLPKSAYEYEEKPDFELYPAGFNDADPENKLYLNIPV 280 >UniRef50_B0MJ37 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MJ37_9FIRM Length = 121 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 68 EAFRFDICG-SVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + RF + S E L+ G+YAV H G L ++ + I W +S Sbjct: 28 DDVRFSVMIGSPMEAFSTVPKSCEKKTLSKGKYAVFTHTGSLQNLVLSYDYIYGVWAMSS 87 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ Y T+ +Y+P+ Sbjct: 88 KFQLDNRESYEIYDGQVREYTDADNYVLIYIPI 120 >UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMK3_9FLAO Length = 159 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 23/164 (14%) Query: 6 LDVNIIDFPSIPVAMLP---HRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVA-WDD 61 ++ +I + + H + +F+ + ++ + + D Sbjct: 4 MNPKVIQISEKNLIGMKSTMHHGQFSNIVTLWKRFMP--NRRIIKNAVNNEFIALQEYID 61 Query: 62 PATTAPEAFRFD--ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 FD C V+ + D G+ + G YAV G T I+ Sbjct: 62 FNNFEAA---FDIWACIEVTN-LDDITDGMETFTIPEGAYAVFLQKGMDAS--KTYQKIM 115 Query: 120 RHWLPASGEKMRKAPIL----FHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P Y N + E D YVP+ Sbjct: 116 TEWLPTSGYIIDDRPHFQVMGEKYKNGSPDSEE-----DFYVPV 154 >UniRef50_Q6MJL0 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJL0_BDEBA Length = 178 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 3/93 (3%) Query: 15 SIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDI 74 + + H +N + + + ++ +TFG DDP R + Sbjct: 38 PFKIVYVEHVGPYHKVNKQLERIEKYMTSQNMT---CGRTFGEYLDDPQVVEEARLRSKV 94 Query: 75 CGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE 107 ++ P G+ GE+ +Y +A G Sbjct: 95 GCIITGEPPQLVEGLQVGEIPQRKYVMAVFTGS 127 >UniRef50_B0S9N2 Transcription activator, AraC family n=3 Tax=Bacteria RepID=B0S9N2_LEPBA Length = 158 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 VS N G + E+ G Y+V + G + + +WLP SG ++ Sbjct: 73 AGVEVS--AVTNVDGFNQLEIPSGLYSVFLYKGLPSEAGAFYQNLFMNWLPNSGYQLDNR 130 Query: 134 PIL----FHYTNLAEGVTEQRLETDVYVPL 159 P Y N + + L VY+P+ Sbjct: 131 PHFEVMGERYRND--DPSSEEL---VYIPI 155 >UniRef50_D2AZ80 Putative transcriptional regulator, MerR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AZ80_STRRD Length = 262 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%) Query: 7 DVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLS--PVNQSQTFGVAWDDPA 63 + ++ P+ VA++ + P+ + + + + R TG PV F + DP Sbjct: 117 QIRLVTEPARRVAIVRESAAGPQDIGRATSAAVA-RLGTGAPGLPVQLIGLFPIDLGDPV 175 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 D+ EP+ + L GG +A A H+G D I T ++ W Sbjct: 176 PV-------DVALVTGEPVSGAELDM----LPGGVFACATHIGPYDQIPLTTHALL-SWC 223 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G PI Y + ++L T + +PL Sbjct: 224 AEHGH-PVHGPIREVYVSDPATTAPEQLVTHLMIPL 258 Score = 40.6 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 + P A H + + + + W E G + V DPATTAP Sbjct: 190 AELDMLPGGVFACATHIGPYDQIPLTTHALLSWCAEHGHPVHGPIR--EVYVSDPATTAP 247 Query: 68 EAFRFDICGSVSE 80 E + + E Sbjct: 248 EQLVTHLMIPLEE 260 >UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia RepID=B8GHG4_METPE Length = 155 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 8/157 (5%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD-DPATT 65 ++ II+ V + + + + + + ++ V + + Sbjct: 3 EIQIIEVLPQLVLGMRQKGAYRDIPAMLGELYIYGISHQ--SVLTGPPVFICHEGSVEEA 60 Query: 66 APEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 D V+ PI + +S EL GGR A H G +D T + W Sbjct: 61 MVANETGDADMEVAFPIEGSIEGEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLF-AW 119 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + G + P+ Y N V + L T+++VP+ Sbjct: 120 IEEQGLAV-TGPVREVYLNDPTLVKPEELMTEIHVPI 155 >UniRef50_C3L2H2 Bacterial transcription activator, effector binding protein n=3 Tax=Clostridium botulinum RepID=C3L2H2_CLOB6 Length = 168 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 G+ + G+Y V H G ++ + T I W+P S ++ Y +G Sbjct: 94 PEGMVAKVIPQGKYVVFTHKGSVEKLQETYEYICGTWIPFSKVELDMRDDFELYDEGFKG 153 Query: 146 VTEQRLETDVYVPL 159 E D+Y+P+ Sbjct: 154 ANNHLSEIDIYIPI 167 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%) Query: 53 QTFGVAWDD-PATTAPEAFRFD--ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD 109 + +G+ +D P E + + V+ G+ + G+Y V H G + Sbjct: 180 KYYGICENDRPTNQFGENVAYSEIVGIEVTS-FDYIPEGMVAKVIPQGKYVVFTHKGSIH 238 Query: 110 DISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + T I W+P S ++ Y +G E D+Y+P+ Sbjct: 239 KLQETYEYIWGTWIPFSKVELDMRDDFELYDEGFKGANNHLSEIDIYIPI 288 >UniRef50_B9QWG5 Bacterial transcription activator, effector binding domain, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWG5_9RHOB Length = 133 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 11/139 (7%) Query: 26 SPELLNYSVAKFIM--WRKETGLSPVNQSQTFGVAWD-DPATTAPEAFRFDICGSV-SEP 81 P + ++ K W + V + +P T F SV + Sbjct: 2 DPADIGTTMGKIFQSVWAFIQKNRIETSGKVLAVYYTYNPETMT-----FRAGFSVSPDA 56 Query: 82 IPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTN 141 + G+ +H G + + ++ W+ M AP Y N Sbjct: 57 ANKGEAPIQFDRTPAGKVVYFQHKGAYSTLRDSYGEMM-SWMEKERLTM-GAPAWEVYLN 114 Query: 142 LAEGVTEQRLETDVYVPLA 160 E L TDVYV L+ Sbjct: 115 DPATTPEDALLTDVYVSLS 133 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 13 FPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRF 72 P+ V H+ + L S + + W ++ L + + V +DPATT +A Sbjct: 69 TPAGKVVYFQHKGAYSTLRDSYGEMMSWMEKERL--TMGAPAWEVYLNDPATTPEDALLT 126 Query: 73 DICGSVS 79 D+ S+S Sbjct: 127 DVYVSLS 133 >UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW Length = 152 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 13/131 (9%) Query: 27 PELLNYSVAKFIMWRKETGLSPVNQ--SQTFGVAWDDPATTAPEAFRFDICGSVSEPIPD 84 P++L + + + E G+ P + F + + + V++P+ Sbjct: 28 PQVLGKAYGAIMNYLFEIGVQPAGEPYVGYFNM--------DMQDLDLECGLPVAQPVVG 79 Query: 85 NRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAE 144 N + E+ G+ + G + I I+ W+PA+G Y N Sbjct: 80 NDK-LKPSEIPAGKQVSCLYTGPYNQIEPAYNAIM-AWIPANGYTPTGV-CYEFYLNDPA 136 Query: 145 GVTEQRLETDV 155 E L T + Sbjct: 137 ETPENELLTKI 147 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 8/154 (5%) Query: 9 NIIDFPSIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + P + +A L E + +F + + + +GV + Sbjct: 129 RFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFG--NIPGQRGNTAYGVC--TQSDG 184 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 FR+ + + G S L RYA+ H G + +I+ T I + W P Sbjct: 185 EAGRFRYMAAAEIRDN-EALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTWFPE 243 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + + P L + +++VPL Sbjct: 244 SGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPL 277 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 76 GSVSEPIPDNRY---GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRK 132 + P+ D ++ L GRYAV H G L ++ T I WL + E++ Sbjct: 199 VMIGGPVKDFDCLPLELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWLQTTREELDD 258 Query: 133 APILFHYTNLAEGVTEQRLETDVYVPL 159 Y + + E +++P+ Sbjct: 259 REDFEVYEHEILSFDDPDNEVKIFIPI 285 >UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZPC8_9SPHI Length = 159 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 VS + G+ L G+YAV H G T I WLP S + + Sbjct: 75 AAVEVSS-FENVPKGMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFGEWLPKSAYTLDQR 133 Query: 134 PILFH----YTNLAEGVTEQRLETDVYVPL 159 P Y E +V++P+ Sbjct: 134 PHFELLPEGYVPTDPNAEE-----EVWIPI 158 >UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SS0_CYTH3 Length = 163 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 72 FDICGSVS-EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKM 130 FD C S+ + G+ EL G Y V + G+ + + I+ WLPAS ++ Sbjct: 69 FDKCASIEVTSMEAIPEGMEYIELPAGLYVVFLYKGDARNAAAVFQYILGTWLPASPYEL 128 Query: 131 RKAPILFH----YTNLAEGVTEQRLETDVYVPL 159 P Y E ++++P+ Sbjct: 129 DIRPHFEVLGETYKKDDPDSEE-----EIWIPV 156 >UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W154_NAEGR Length = 174 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 26/175 (14%) Query: 1 MTNLTLD--VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETG--LSPVNQSQTFG 56 M+ T + II P+ + ++ + F W KE +SPV + Sbjct: 1 MSTTTDQTAIKIITLPAKKYLGVRR----NNISIADGDFPKWIKEASRLISPVLNRTCYP 56 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPI-------------PDNRYGVSNG--ELTGGRYAV 101 P +P+ + V + + N G+ E+ G YA Sbjct: 57 TVTAFPRFVSPQDADIEHLLFVDQELSIDSDLVNRVENSQPNDEGLKAQLSEMPSGEYAY 116 Query: 102 ARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 R+VG + +S +++ L SG + P Y N V ++ L TD+Y Sbjct: 117 FRYVGPYEGLSSVWNKLMKEKL--SGY-VHTEPCWEEYINDCTQVKKEELITDLY 168 >UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q1C5_9CLOT Length = 278 Score = 65.7 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 15/161 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVA--KFIMWRKETGLSPVNQSQTFGVAWD--- 60 + I + P VA + + + ++V K I + + + V +D Sbjct: 125 FKIEIKEIPVSYVAYIRSKGPCTIEEFAVRYCKLISLVERNNFHIIKNA--MAVYYDNCI 182 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAV-ARHVGELDDISHTVWGII 119 D E + ++C +SE + GG AV A H G D++ + + Sbjct: 183 DFEEKEKEDYDIEVCIVISEEREIDGLVRKF----GGFKAVTAVHYGSYDNMIDSYRKLY 238 Query: 120 RHWLPASGEKMRKAPILFHYT-NLAEGVTEQRLETDVYVPL 159 ++ G ++ PI +Y ++ V E+ T++ +P+ Sbjct: 239 KYIYEN-GYEICGEPI-DNYLVDIMNTVDEENYVTELIIPI 277 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 7/157 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELL-NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D+ I + VA + + + + Q FGV +D Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYD--YI 184 Query: 65 TAPEA-FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-ISHTVWGIIRHW 122 E F + +++ + G+ + YA+ G + I II ++ Sbjct: 185 MDEEDSFIYLAGFDLTDEVKAKELGLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYIISYF 244 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P G + ++P Y + + + +++VP+ Sbjct: 245 FPKEGYRHDESPDFEVYGDGDPNS--EDYKMELWVPI 279 >UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia RepID=A3CSG8_METMJ Length = 286 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 21/168 (12%) Query: 4 LTLDVN---IIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMW-RKETGLSPVNQ--SQTFG 56 ++ + I D P++ L R E + + + + E G P + Sbjct: 121 FSMSITEPVIKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMF 180 Query: 57 VAWDDPATTAPEAFR-----FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 + D E +R ++ ++ + + V L GGR+ H G + Sbjct: 181 ICHD-------EEYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGV 233 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + P Y N V E+ L T+V P+ Sbjct: 234 GKAYERLFS--YMNEHRLVPSGPSRELYLNDPAEVPEEELLTEVQSPV 279 >UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens RepID=Q4K7X3_PSEF5 Length = 162 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 28 ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRY 87 + + +F+ + + +T+G+ +P F + +S+ + D Sbjct: 35 QDIGLLWQRFVPHIGK--VPGQVDRKTYGICC-NPD--GQGGFEYIAGVEISK-LDDLPE 88 Query: 88 GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVT 147 E+ YAV H G L D+ T I WLP SG + AP Y+ Sbjct: 89 RYRWIEVQPQHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFERYSADFNPQA 148 Query: 148 EQRLETDVYVPL 159 ++++PL Sbjct: 149 GTG-VLEIWLPL 159 >UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales RepID=B8HE83_ARTCA Length = 288 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 13/167 (7%) Query: 3 NLTLDVNIIDFPSIPVAM------LPHRCSPELLNYSVAKF--IMWRKETGLSPVNQSQT 54 N T+D I D P+ + L H+ + +A + L + Sbjct: 122 NTTMDTRIADRPAFRLVGHAARVPLIHQGPNPHIQAHIASLPAAEHARLKALCNTEPAGL 181 Query: 55 FGVAWD-DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDIS 112 V+ D DP + +VSE P + E+ G +AV R G + Sbjct: 182 LQVSADVDPDYAEGSDLTYLHGVAVSEGTP-VPEDLDAIEVPAGAWAVFRTSGAYPAALQ 240 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T HW P++ ++R P + + A+ + T++++P+ Sbjct: 241 STWAATAAHWFPSNPWRLRPGPSVVAILDRADDFS--TATTELWLPV 285 >UniRef50_A5V1E8 Transcription activator, effector binding n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V1E8_ROSS1 Length = 155 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 22/159 (13%) Query: 8 VNIIDFPSIPVAMLPH-----RCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 V I D P + + S + + W ++ G P + G+ Sbjct: 11 VTIRDLPPTMIVYTSVLLQQMKGSYNDQIRDGFENIKDWARQQGYDPSAL-KVIGI---- 65 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P + ++ + E P N + +L GGRYA+ + I T+ Sbjct: 66 PNINGAQLIGYECALEL-EIAPLNTEDIHTKQLPGGRYAILSLEKDSATIGETIRRFFAE 124 Query: 122 WLPASGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++P + + P Y D VP+ Sbjct: 125 YVPQHQLTVDLRRPNYEIYY---------EHVMDFCVPI 154 >UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=Proteobacteria RepID=Q4K667_PSEF5 Length = 295 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 8/136 (5%) Query: 26 SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDN 85 P + +F R++ T+G+ +R+ V+ P Sbjct: 166 DPGTIAELWQRFEP-REQEIQRLAEPVGTYGIC----QPLEDGQWRYVAGLPVAADAPLV 220 Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 G+ E+ YA H G + + T WLPA+G A YT Sbjct: 221 P-GMVELEIPARHYARVEHHGSVATLPETFRAAYSEWLPAAGLMPIDAVEFE-YTGERFL 278 Query: 146 VTEQ-RLETDVYVPLA 160 ++Y+PL+ Sbjct: 279 GPMHPDSVVELYIPLS 294 >UniRef50_Q0W824 Putative transcription regulator (MerR family) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W824_UNCMA Length = 287 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 22/165 (13%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP------- 62 I + P + V +P+ + I + SP NQ + P Sbjct: 131 IKEIPEVRVISKRGTGAPQQVIPG---LIGAVMQQIFSPANQRGNVNIC--GPITLLFNG 185 Query: 63 ---ATTAPE----AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 T E ++I + I G L GGR + G ++ Sbjct: 186 ETLTKTPEEWGIAHLEWEIAVPIVGRI-SVEPGFEVKALPGGRMVTIVYTGPYHEVGGAY 244 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +I ++ + G + Y N + V E +L T++ +P+A Sbjct: 245 TKVI-DYIGSHGLTVNGL-CREMYLNNPQEVPESKLMTEIQMPVA 287 >UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp. CCS1 RepID=Q28T08_JANSC Length = 267 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 16/162 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-----ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 ++ P+ P + C+ + + + + + ++G++P+ S V Sbjct: 115 MEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPL--SMPMSVYTG 172 Query: 61 -DPATTAPEAFRFDICGSVS-EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 DP RF VS + + + L G H G D ++ T + Sbjct: 173 MDPKI-----LRFRGGVIVSTDDAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHKAL 227 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 L A G P YT+ + L T+++ +A Sbjct: 228 -WEHLEAQG-TPGTMPTWEIYTDDPGDTAPEDLRTEIFCTIA 267 >UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P7_HALOH Length = 231 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 6/155 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I++ + VA + + W K+ L + ++ FG +D+P+ T Sbjct: 79 EVRIVELKPVWVASYRAE-AESPEPRAWEVIFKWAKKYNLLQLPGTRFFG--FDNPSPTP 135 Query: 67 PEA-FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 +A + ++ ++ + + + +GG YAV D+ + + W+ Sbjct: 136 DKAVYGYEFWVTIPHKNFNIPEEMKIRKFSGGLYAVTNTNFREFDVGERWKQLYK-WVKE 194 Query: 126 SGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 S R+ L + + ++ D+Y P+ Sbjct: 195 SEFSYREGICLEEHITLTGYNLDINTVQLDLYEPI 229 >UniRef50_Q2CBF8 Putative uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CBF8_9RHOB Length = 152 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 7/105 (6%) Query: 52 SQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 S + + PE RF + ++ P R + GEL GG H G + Sbjct: 51 SPPMAIY----ESMEPERLRFRVGVLIT-PEHAGRSPLRVGELPGGEAVHTVHTGPYATL 105 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 + T + L A G P+ Y + E L T+++ Sbjct: 106 NATHRAL-DEALAADGH-PHGWPVWEVYVDDPSETPEAELRTEIW 148 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 6/126 (4%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE 93 F + ++P + +G+ D + P + + Sbjct: 173 WGTFTQIALQHSIAPNH--FYYGIV-DTVRVLPNSQLVYWAAS--DNPAFSQISQLEHVT 227 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 + YAV HVG T+ +++ WLP+SG + L Y + + Sbjct: 228 IPAQMYAVITHVGPAATFPKTLEWVLQSWLPSSGYMGLEGFELECYPRDY-QLESHEAKM 286 Query: 154 DVYVPL 159 + ++P+ Sbjct: 287 EFWLPI 292 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 +CG +S ++ RYAV H + I T I WLPASG A Sbjct: 195 LCGVEVSDFSALPAELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQWLPASGHIPADA 254 Query: 134 PILFHYTNLAEGVTEQRLETDVYVPL 159 P Y + V+ ++++PL Sbjct: 255 PNFERYDAKFDPVS-GMGGLEIWLPL 279 >UniRef50_Q12WP7 AraC_E_bind-containing bacterial regulation effector protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12WP7_METBU Length = 132 Score = 63.3 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 73 DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRK 132 + VSE I V EL GG H G +D T + W+ +G K+ Sbjct: 48 EAVIPVSEKIEGVGD-VKCYELPGGNMVKVVHNGPYEDTGPTYQELF-AWIDVNGLKITG 105 Query: 133 APILFHYTNLAEGVTEQRLETDVYVPL 159 Y N V + + T++YVP+ Sbjct: 106 L-KREAYLNDPHDVPPEDILTEIYVPI 131 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 2/72 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV + P + + H E + + W GL + +DP Sbjct: 62 DVKCYELPGGNMVKVVHNGPYEDTGPTYQELFAWIDVNGLKITGLKR--EAYLNDPHDVP 119 Query: 67 PEAFRFDICGSV 78 PE +I + Sbjct: 120 PEDILTEIYVPI 131 >UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJZ3_KYTSD Length = 276 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 55/166 (33%), Gaps = 17/166 (10%) Query: 5 TLDVNIID--FPSIPVAMLPHR-CSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T+ + I + PS + +L S +FI GL+P+ GV +D Sbjct: 118 TMSIEISETTLPSTTMVLLRGAIPSYSEEGVLWEQFIPELGRQGLTPIGPG---GVVEND 174 Query: 62 PATTAPEAFRFDICGSVS-EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P D+ + P R + EL R A G IS + Sbjct: 175 PTYVEAGP---DVSVWLPVAPGTTARGPLEVHELPEQRAVKATITGPYSQISEAHAQM-A 230 Query: 121 HWLPASGE---KMRKAPI---LFHYTNLAEGVTEQRLETDVYVPLA 160 ++ G P+ + Y + E L T+VY PLA Sbjct: 231 QYMGQEGLTEASPGDGPVGKVVNRYLSDPSNTPEADLLTEVYRPLA 276 >UniRef50_A4AJI4 Putative uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJI4_9ACTN Length = 158 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 ++C +++P + + + EL GG A HVG D + T + W G Sbjct: 69 CEVCLPITKPFTGHPT-LRSHELVGGLVATITHVGSYDGLKATYNQLF-DWFSEHGHTYA 126 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 AP Y N + V E +L T + +P+ Sbjct: 127 GAPR-EIYLNSPDEVAEDQLLTTIEMPV 153 >UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R723_9PLAN Length = 155 Score = 63.0 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 15/155 (9%) Query: 11 IDFPSIPVAMLPHRCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 D P++ A + R S E + +F + + +++G++ + Sbjct: 8 RDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQ--IPGQVGRRSYGIS----VLVSG 61 Query: 68 EAFRFDICGSVSEPIPDN-RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 FD +V G++ + ++AV H G + ++ + I R WLP S Sbjct: 62 TDCDFDYMAAVEVHSSAEIPDGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIYRQWLPTS 121 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLE--TDVYVPL 159 G + P + YT G +++ +++VP+ Sbjct: 122 GLRTAPGPCIECYTEEFCG---EKMIGGMEIWVPI 153 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 63.0 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 19/166 (11%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYS---------VAKFIMWRKETGLSPVNQSQTFGVAW 59 I+ PS A L R + + F + + L + + +G++ Sbjct: 157 EIVSLPSTTFAGLQSRFLSATSDEANNMTVIPNLWNAFFE--RASELQNLTEGVYYGLS- 213 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELT----GGRYAVARHVGELDDISHTV 115 ++P D ++ D V G + GG +A H G +D + T+ Sbjct: 214 ENPEAINLARQHPDEAIYLAAAQVDPDAPVPEGMHSWNSVGGLFAKFEHQGPVDTLGETI 273 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRL-ETDVYVPLA 160 I W P S K R+ P + + + + +++VP++ Sbjct: 274 AYIYGKWFPESEYKEREGPDINRF--GPRFIPQSENSLFEIFVPIS 317 >UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae RepID=A5FHW5_FLAJ1 Length = 160 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 V + + + + G YAV H G + T I WLP S + Sbjct: 73 AAVEV-QNLDTIPENLETLIVPDGLYAVFVHYGPASEAHKTYHPIFTEWLPNSKYTVDNR 131 Query: 134 PILF----HYTNLAEGVTEQRLETDVYVPL 159 P Y E ++++P+ Sbjct: 132 PHFAVMDHKYKKDDPDSEE-----EIWIPI 156 >UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TVN7_9FLAO Length = 165 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T F +V+ D + ++ G++AV + G D I WLP Sbjct: 71 TPETKFVKWAAVAVTTE-NDIPNQLEVLKIPKGKWAVFPYKGTTRDFGVFAQYIYSQWLP 129 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG ++ P G + E +V++P+ Sbjct: 130 NSGYQLDDRPHYEFMPEDYLGPNNPQSEEEVWIPI 164 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 F F + V + + G + G+YA + G + + +T I WLP S Sbjct: 199 HFSFVVGEEVEDFDLELNEGFVKIVIPEGKYAEFKVSGSHEMVQNTRRYIYGSWLPNSNY 258 Query: 129 KMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P T++ ++ +Y+P+ Sbjct: 259 ERTSGPDFEI-TDVLHSNGPNDIKMKIYIPI 288 >UniRef50_UPI0001C318BF transcriptional activator ligand binding domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318BF Length = 279 Score = 62.2 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 24/170 (14%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMW--RKETGLSPVNQSQTFGVAWDD 61 + +V+ P + L + E L+ A + R + G+ Sbjct: 114 MPYEVSTATLPPRRLLGLRGTTTAERLHRDAAALVEQLLRALPWAAAPGAPPLVGLY--- 170 Query: 62 PATTAPEAFRFDICGSVS------------EPIPDNRYGVSNGELTGGRYAVARHVGELD 109 P D+ +V G+ EL GG A HVG D Sbjct: 171 -----PLDLDGDVAFAVGVDPAASAAPEAAGAAASRPDGIVPIELPGGAIARVTHVGSYD 225 Query: 110 DISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ + ++ WL G P+ Y + V RL T+V +PL Sbjct: 226 ELPLAYFPLL-AWLQERGH-PAAGPVRETYLDDPSEVEPTRLRTEVSIPL 273 >UniRef50_B1I236 Transcription activator, effector binding n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I236_DESAP Length = 160 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 12/155 (7%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + + P+ VA + L++ +V +W +E G + GV ++P P Sbjct: 5 VTLKNIPACTVAYKSGKGPYSLISEAVRDLNLWIRENGHTAAG--PPVGVFKNNP-YMPP 61 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTG-----GRYAVARHVGELDDISHTVWGIIRHW 122 E ++ V + G R +A H G+LD + + G+IR + Sbjct: 62 EELLWE--VQVPLKLDGPLSVPETDTTPGLKDVPDRQVMAAHQGDLDTLGEALQGLIR-F 118 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + ++G +M AP + LE ++ + Sbjct: 119 MVSNGYRM-TAPPEQVFLKDPVTTPPHELEGELRL 152 >UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB74 Length = 167 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTE 148 + + G+YA+ H G LD++ T I W +S E++ Y G + Sbjct: 96 FVSKTIKEGKYAIFTHTGSLDNLDKTYEYIWGTWFLSSKEELDIRDDFEVYDERFLGPSN 155 Query: 149 QRLETDVYVPL 159 + D+Y+P+ Sbjct: 156 VNSQIDIYIPI 166 >UniRef50_C3RJJ6 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RJJ6_9MOLU Length = 272 Score = 61.8 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 10/154 (6%) Query: 9 NIIDFPSIPVAMLPHRC--SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + + P I +A + + ++ ++ L P+ +DD Sbjct: 123 QLKEIPEIYIAYVRQQGLADQAAFMRRFSELNTLCRKNNLEPIGN--IMARYYDDYQQYD 180 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 P+ DI S+ + GV E G A H G D T ++ W+ + Sbjct: 181 PD-C-ADIEVSIQIDLNHEIGGVVRKE-PGYLCVSALHYGSYRDEYKTYT-LMMEWMKKN 236 Query: 127 GEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 M P L +Y E T++ +P+ Sbjct: 237 NLVMCG-PALEYYLIDPIFTNDENEFVTELRIPV 269 >UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8P4_GEOSF Length = 221 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 82 IPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTN 141 + + + L GG+YAV H G + T I+ WLP S + Sbjct: 143 LEEIPTSMETYLLQGGKYAVFTHHGPASAAAGTFQYILGEWLPKSSYNLDDREHFEVLPE 202 Query: 142 LAEGVTEQRLETDVYVPL 159 + + +++VP+ Sbjct: 203 GYNPIDP-EAKEEIWVPI 219 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 75 CGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAP 134 GSV E G++ + YAV HVG + + T+ I+HWLP+SG + Sbjct: 239 AGSVMEEGASLPAGLARLPVPAQTYAVLSHVGPVSQLGQTLNWFIQHWLPSSGYRGLDGF 298 Query: 135 ILFHYTNLAEGVTEQRLETDVYVPLA 160 L Y +G + ++P+A Sbjct: 299 ELERYAPDFDGNQP-DARMEYWLPVA 323 >UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQZ2_CLOCL Length = 272 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 20/166 (12%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + + D+ I PS V + E + + + + ++ + +D Sbjct: 115 SRMNYDITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNI--KAIGPSYAIYYD 172 Query: 61 ------DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT 114 D DI +V + + V AV H G +++ Sbjct: 173 TGYKESDVDVEVVMTISGDIAETVRVKVKELEA-VDEM-------AVVFHKGHFHEMTSA 224 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 + WL A+ +M PI Y + T++ P+ Sbjct: 225 YRAL-AIWLSANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPV 268 >UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JZ42_PSEFS Length = 170 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 T+GV +P F + V D + E+ YAV H G + + Sbjct: 68 TYGVCH-NPKH---GEFDYMAGVEVPTK-GDVPSNFESIEIPPLNYAVFPHYGPVQALEQ 122 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 T I+ WLP SG K+ A Y+ +G ++++P+ Sbjct: 123 TYERIMFEWLPHSGYKVMGA-DFERYSADFDGRKGTGT-VEIWLPVG 167 >UniRef50_A3J103 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J103_9FLAO Length = 115 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%) Query: 74 ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKA 133 +VS + E++ G YAV + G + + I WLP S ++ Sbjct: 28 AAIAVSS-FDFIPADMEILEISEGLYAVFNYKGNQSNAAAFFNLIYTEWLPKSDFELDNR 86 Query: 134 PILF----HYTNLAEGVTEQRLETDVYVPL 159 P Y N A E ++++P+ Sbjct: 87 PHFEILGTKYKNNAPDSEE-----EIWIPI 111 >UniRef50_UPI0000587148 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587148 Length = 202 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 37/161 (22%) Query: 16 IPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDIC 75 + VA L + + +SP ++ G+ +DDP TT R+ + Sbjct: 47 LRVAYLYNTGPYRNCGLLFGRV------NSVSP--HARCMGIYYDDPKTTPESELRYMVG 98 Query: 76 GSVSEPIPD---------NRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW--LP 124 +SE G E+ A+ +G + W P Sbjct: 99 TILSEHDDAVDDELQKRCEDDGFRVIEVP----AIVDAIGTDFPFRWMLSVFFAIWRVYP 154 Query: 125 A-----SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 A E + P Y T+ Y+PL+ Sbjct: 155 ALNGKIKKEGLNARPCFEIY---------GDGMTNFYMPLS 186 >UniRef50_UPI0001C41F50 transcriptional regulator n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F50 Length = 155 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 63/162 (38%), Gaps = 18/162 (11%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ VA++ ++ + + ++K W + + V F + +++P T Sbjct: 1 MEIQEKTIEDQKVAIMNYKGYLKDMEILISKLTGWIELEEIETVGD--LFAIFYNNPRTA 58 Query: 66 APEAFRFDICGSVSEPIPDNRYG-------VSNGELTGGRYAVARHVGELDDISHTVWGI 118 + +D+ ++ + + + + L+G H G +D+I T I Sbjct: 59 KEDEVVYDVGIPINPELDPDETEEIRIVTIIEHKVLSG------LHYGSIDNIQETYN-I 111 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 + + + + +P Y V E+ + T++ +P+ Sbjct: 112 MAEYSIENKYDIIGSPK-EVYIKSKFDVEDEEDMITEIQLPV 152 >UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850B59 Length = 159 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 18/164 (10%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSP-----VNQSQTFGVA 58 ++ I++ + V + S + ++ F E+G+ + GV Sbjct: 1 MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60 Query: 59 --WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTV 115 +D P E F + I + + E+ +AV VG I Sbjct: 61 MDFDHPN----ERFTYFIGAEDIANVTQTE--LEKREIPRNTWAVFESVGPMPHAIQAVW 114 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W P++G K P Y VT++ +V++P+ Sbjct: 115 QRIYSEWFPSTGYKHAGGPEFELYL--PGDVTQEDYRCEVWIPI 156 >UniRef50_A7NGL3 Transcription activator effector binding n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGL3_ROSCS Length = 156 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 11/124 (8%) Query: 8 VNIIDFPSIPVAML-----PHRCSPEL-LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 V I D P VA + + W + GL + + + G+ Sbjct: 11 VTIQDLPPFRVACFFCNLQLATGQYSNQIQQGFRQIKSWALQRGL-DLTRQRIIGIPH-- 67 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 + +D C + E + + GGRYAV I + Sbjct: 68 --VRDGQLTGYDCCVELPENGVIDDHSFQMKRAPGGRYAVLLLEKNSAVIGEAIGRFFTE 125 Query: 122 WLPA 125 + PA Sbjct: 126 YAPA 129 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 82 IPDNRYGVSNGELTGGRYAVARHVGELDDIS-HTVWGIIRHWLPASGEKMRKAPILFHYT 140 + G + EL G+YA R G + +I + I WLP S + + P Sbjct: 221 FAEVEEGFACLELPSGKYAAFR-NGTMPEIGQNAWKYIYGTWLPNSNYERGEGPDFE--V 277 Query: 141 NLAEGVTEQRLETDVYVPL 159 T Q++ +Y+P+ Sbjct: 278 TDVLNSTPQKISMTIYIPI 296 >UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD Length = 160 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 12/162 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 TN L I++ + L + F R V +FG+ Sbjct: 3 TNELLPFTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQ-RVSEIDHLVQDDLSFGIV 61 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 D F + VS G++ L RYAV H G D S TV Sbjct: 62 QD-----RERDFTYYAAVEVSS-FTKVPEGMATIILPACRYAVFTHKGPQDKFSETVVAA 115 Query: 119 IRHWLPASGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ L SG + L Y + E D+Y PL Sbjct: 116 LKS-LKESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPL 156 >UniRef50_Q9K6U1 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K6U1_BACHD Length = 300 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 F + C + + G E+ GG YA + G + +S I WLP+S Sbjct: 200 SHFTYMACVEIEAGDVNIPQGFIQKEIKGGTYASFHYKGAANQLSALTNYIYGSWLPSSQ 259 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + Y + E + + +++ P+ Sbjct: 260 YQSHFGVEIEVY-DEREPKEDGEVAVEIWTPI 290 >UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EUL1_9FIRM Length = 266 Score = 59.1 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 17/109 (15%) Query: 55 FGVAWD---DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDI 111 + D DPA + E + ++E D + L G A H G + Sbjct: 169 MAIYHDQEFDPAFSDIE-----LGVGITE--RDKADFI----LPGHLCATTIHKGAYSGL 217 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNL-AEGVTEQRLETDVYVPL 159 I+ W+ A+G KM P Y + + + T+++ P+ Sbjct: 218 PDAYGAIV-AWINANGYKMDGMP-YEIYLKTHFDKLPPEEWVTEIFFPV 264 >UniRef50_A3I8G8 Transcriptional regulator, MerR family protein n=3 Tax=Firmicutes RepID=A3I8G8_9BACI Length = 281 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 81 PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYT 140 IP + GG A + G +++S ++ W+ G ++ +P Y Sbjct: 201 AIPIKESVKGTRDFPGGLCAKSVLKGAYNELSAIYANLL-EWVKKEGYELVDSP-YEIYI 258 Query: 141 NLA-EGVTEQRLETDVYVPL 159 + + T+VY P+ Sbjct: 259 TDPNQEQHTEDWLTEVYFPI 278 >UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7J0_UNCMA Length = 153 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 13/155 (8%) Query: 9 NIIDFPSIPVAMLPHRCS----PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 I + P + R P ++ + I + E G P VA+ + Sbjct: 6 EIKELPVQQALSVRTRSPVENLPNVIGQTYGTIIQYMSELGEQPAGAPF---VAYYNMDM 62 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T + +I V+ +P V + GGR + G +I+ + + + Sbjct: 63 TDLD---LEIGFPVNRELPGKGV-VQPSRIPGGRTGTCMYTGPYQEIAPAYDALAKL-IA 117 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + Y N +L+T + P+ Sbjct: 118 EKGLEPTGV-AYEIYYNSPMDTEPSKLQTLILFPI 151 >UniRef50_C9RC23 Transcriptional activator ligand binding domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RC23_AMMDK Length = 158 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 11/159 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ I + P VA L + E +V + W GL+ V +P Sbjct: 1 MEITIKELPPTKVAYLRKKGDMESFPLAVQELEKWIVNAGLAISG--PPVLVYLSNP-VG 57 Query: 66 APEAFR-FDICGSV---SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P FR +++ V +E + + GV EL + A +H G I + G R Sbjct: 58 MPHPFREWEVQIPVTGEAEVVEEEDRGV--KELPQRKVACVQHQGGFRAIEFILPGFFRA 115 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G ++ + P Y +L G + + T+V P+A Sbjct: 116 IYEQ-GYRL-EGPAEEVYPDLKGGEIDLEMVTEVRFPIA 152 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 58.3 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 14/154 (9%) Query: 9 NIIDFPSIPVAML--PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 ++D P+ VA + H A W + P +FGV + + Sbjct: 138 RLLDTPAFQVAGIGMRHTRDSGG-----AIPGQWAQLNREWPAPAPISFGVCCN-----S 187 Query: 67 PEAFRFD-ICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + FD I + + + RY VA H G + I T + ++ +LP Sbjct: 188 DDEGGFDYIAALPASALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLPG 247 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +G + AP L Y + T ++++P+ Sbjct: 248 TGLSLADAPDLERYDTRFDEHTGNG-GVEIWLPV 280 >UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VB55_9RHOB Length = 157 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 +FR+ + V E D G L G Y V + ++ + WLP Sbjct: 63 PDGSFRYGVGIEV-EEAEDLPEGACEMHLVDGEYVVFSQRTPIAELPARFDAVFAEWLPQ 121 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 S R+ + Y + + + ++ +++VP+A Sbjct: 122 SDFVQREGAVFECYPDD-DSPEDGKMLYEIWVPVA 155 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 R DI + + + + YA +H G +D + T+ I HWLP SG Sbjct: 216 ELRSDIAMPALPSVVSEQLAI--LNVPKQTYAAVKHKGPIDRLPQTLEWFILHWLPTSGY 273 Query: 129 KMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + L Y + + E + +VP+ Sbjct: 274 RGVDGYELEVYPDDYQADAAH-AEMEYWVPI 303 >UniRef50_D1A7B1 Transcriptional regulator, MerR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A7B1_THECD Length = 258 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 13/152 (8%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 ++V ++ P+ V ++ +P + S ++ + G+ Sbjct: 114 VEVTVLQEPARHVRLVREVATPATIADSTSRCVARLLGELDGGTPSGPLIGLF------- 166 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 P+ + +V+ +P R L GG +A A H G + I T G++ W Sbjct: 167 -PQDLAEEFTVAVAAEVPAERAD---EVLPGGVFAAAVHTGPYEQIDLTGHGLL-AWCGE 221 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 G P+ Y N + L T + V Sbjct: 222 HGHVPAG-PLREVYLNNPADTPPEGLMTRLMV 252 >UniRef50_A4QE23 Putative uncharacterized protein n=2 Tax=Corynebacterium glutamicum RepID=A4QE23_CORGB Length = 166 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 16/159 (10%) Query: 9 NIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + + P++ H + P + + G++P+ F + +P T Sbjct: 15 TVNEIPTVVAVFDNHPMNDMPAAFDQTYQVLFPTLGAKGIAPIG--PGFALYTSEPTDTV 72 Query: 67 PEAFRFDICGSVSEPIP-----DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 F++ VS+P+ N + N + G+ A H+G D +S G Sbjct: 73 S----FEVGIPVSQPLEGDVSAANGIVLKNSVVPAGKIARISHIGSFDGLSQAW-GSFVE 127 Query: 122 WLPASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 L ++G ++ P Y + L+TD+YV L Sbjct: 128 ALESAGHEI-DMPYWEVYVTEPSPDIDPATLQTDLYVLL 165 >UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax=Chlorobiaceae RepID=B3QQQ3_CHLP8 Length = 158 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 13/155 (8%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNY----SVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + + +P ++ R + + + + G P + +F +D Sbjct: 10 ELKELAPVPAIVIRTRVAVSEIGPLFDSGFREIRQVLESQGKQP--SAPSFARYYDMSEG 67 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 + F + + G+V V + G+ A ++G +I +++ W+ Sbjct: 68 SLDVEFGYPVDGNVQ-----VSGRVVSASTPSGKAATCLYIGPYSEIEPAYSALMK-WIA 121 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + +M Y + ++L T +++ L Sbjct: 122 ENSLEMNGE-AYEIYLDDPFETPPEKLRTQIHLLL 155 >UniRef50_B8I6X2 Transcriptional regulator, MerR family n=26 Tax=Firmicutes RepID=B8I6X2_CLOCE Length = 273 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 15/164 (9%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHR-CSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 T + +V + P VA + + + + ++ + L P + + D Sbjct: 115 TAMNYNVVLKTLPERYVASVRKIIPAYDQESILWNLLMVETETMNLQPAENCYSLAIFHD 174 Query: 61 DPATTAPEAFR-FDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 E ++ D+ + + N V + A A + G + ++ V Sbjct: 175 -------EGYKENDVDVEIQGTVKGTYPNTEHVVFKTVPEVEIASATYKGSYEQLT-AVN 226 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 + +W+ + + A + Y L T+V P+ Sbjct: 227 QAVANWVNDNSYEFNGA-MFCIYHVSPAQTQNPNELVTEVCYPV 269 >UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN1_SEBTE Length = 155 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 6 LDVNIIDFPSIPVAML-PHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + I + P I + P+ + + +F G ++G++ D+ Sbjct: 1 MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFE--AAKGKFNPEHMNSYGLS-DN 57 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL--DDISHTVWGII 119 T E F + I E + G +L +YAV G++ D+IS + I Sbjct: 58 MRMTE-ELFDYTIGME-KESYTEIPEGFEEIKLPANKYAVYTFKGKIEGDNISKFIGDIY 115 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W+P + +Y ++ E D+YVP+ Sbjct: 116 MKWMPEEKLECIPEYSFEYYDERWIDDSD-ESELDIYVPI 154 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 76 GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPI 135 S+ + + + YAV +H G ++ + HT+ + +WLP SG + Sbjct: 205 ISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPIEHLPHTLSWFVLNWLPNSGYRGVDGYE 264 Query: 136 LFHYTNLAEGVTEQRLETDVYVPL 159 L Y + E + +VP+ Sbjct: 265 LEMYPFGYQAHA-SDAEMEYWVPI 287 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 12/162 (7%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 ++ ++ I S + + E+ +V K G P + G+ Sbjct: 131 DIEMNYRIEKKDSFRIVGISEPLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMG 190 Query: 61 DPATTA---PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 ++ + +R+ I + S+PI + G+ + +A+ G + Sbjct: 191 LLGVSSCNNLDNWRYYIAVASSQPIEN---GLEEYIVPSSLWAIFSGKGTAKSMQELEKR 247 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 II WLP SG + AP + Y TE +V++P+ Sbjct: 248 IITEWLPTSGYEYGNAPDIEVYLKADPEDTEY----EVWIPV 285 >UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon RepID=D1JG23_9ARCH Length = 332 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 21/160 (13%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQ-------SQTFGVAWDDP 62 + D S V + + E + + + I P NQ + D+ Sbjct: 182 VKDVSSQRVLSRREKGTYEEV---IPRLIGELSGRVFGPENQRARVKCTGIPITIYHDN- 237 Query: 63 ATTAPEAFRFDICGSVSEPIPDN---RYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 E D V+ P+ N L G+ H G D + Sbjct: 238 -----EYKEKDADIEVALPVSGNITVGPEYEVKILDEGKVVSYIHKGPYQDAGGAYRAVF 292 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ G K+ Y N + E L T++ VP+ Sbjct: 293 -EYIDKKGLKVVGNYR-ELYLNDPKETPETELLTEIQVPV 330 >UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina RepID=Q465L3_METBF Length = 287 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 27/174 (15%) Query: 1 MTNLTLDVN---IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQ------ 51 M + + I + P + V + + ++ K I + SP NQ Sbjct: 123 MELFKMSITEPVIKEIPEMRVISKREKGTFV---ATIGKLIGEICTSVGSPENQRNRVKV 179 Query: 52 -SQTFGVAWDDPATTAPEAFR-----FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHV 105 + D E ++ +I VS I + L R + Sbjct: 180 TGPVMFLCHD-------EEYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYR 232 Query: 106 GELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + I + + E + +P Y N E V E+ L T++ VP+ Sbjct: 233 GPYPGVEAGYNQIFSYARENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPI 284 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 16/169 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHR----CSPELLNYS-VAKFIMWRKETGLSPVNQSQT---F 55 + ++ II P+ V R + ++I + ++ Sbjct: 132 IRMEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVEL 191 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD----- 110 G+ ++ ++F + I G+ E G YAV + Sbjct: 192 GICYN--FDMGSDSFSYLIGMEAESFDGVEGEGLVCREFDGAEYAVFTTPKVPREQFSSS 249 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I +T + W P SG + P Y + ++ D+Y+P+ Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELY-DERSNHELSEIQMDIYIPI 297 >UniRef50_B2IBF7 Transcription activator effector binding n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IBF7_BEII9 Length = 219 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 15/164 (9%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS----PELLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 N T V I+ P+ PV +L + +A K GL+ V Sbjct: 63 NATTQVTTIEIPARPVLLLSGSSDWEKGFATIREKLATIETELKTAGLTQAGH--PLAVF 120 Query: 59 WDDPATTAPEAFRFDICGSV---SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 +T F+F + E + V G+ G+ +H D I T Sbjct: 121 ----TSTDENGFKFSAMIPITAKPEGLDHLGNEVKVGDSPSGKAIKFQHRDAYDTIDSTY 176 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +I +L G + + + Y + + LETD+YV L Sbjct: 177 D-LITAYLDEKGLEAQNL-FIEEYLTDTKTSDDTSLETDIYVFL 218 >UniRef50_Q054R8 Putative uncharacterized protein n=3 Tax=Leptospira RepID=Q054R8_LEPBL Length = 181 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 15/143 (10%) Query: 8 VNIIDFPSIPVAMLPHR--CSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 V I + P +L H + + + G+ + F + D+P Sbjct: 28 VRIREEVKGPFYVLSHERIGDYRNVGLTFEVLQKELPKKGI---RDFKLFSIYLDNPNDV 84 Query: 66 APEAFRFDICGSVSEPIPDNRYGVS----NGELTGGRY--AVA---RHVGELDDISHTVW 116 E R ++ +EP+ G+S + +Y A + I Sbjct: 85 PKEKLRCEVGALFAEPLSKVPEGLSLDLKTRTIPSRKYIFAEFPLKNFLSIFLGIYKVYP 144 Query: 117 GIIRHWLPASGEKMRKAPILFHY 139 + R G ++ + Y Sbjct: 145 KLFRV-CEERGCNLKGRASMEIY 166 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%) Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + G+ EL YAV H G + D+ TV+ I LP Sbjct: 184 EAGNCTYLAGV----KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTVYTIWNKALPE 239 Query: 126 SGEKMRKAPILFHYTNLAEGVTE-QRLETDVYVPL 159 +G K +P Y E R ++++P+ Sbjct: 240 AGLKTADSPDFERY--DQRFNPETGRGSVEIWIPV 272 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 13/143 (9%) Query: 24 RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGV----AWDDPATTAPEAFRFDICGSVS 79 + + +F +K+ N+ G+ + P + FR+ V Sbjct: 170 KGGFAGIGRCWRRFHA-KKDRISGCTNKEFLIGINDYSYY--PCKGLDQVFRYIAGAEVM 226 Query: 80 EPIPDNRYGVSNGELTGGRYAVARHVG-ELDDISHTVWGIIRHWLPASGEKMRK--APIL 136 + G+ L GR V G D + V I W P S + + Sbjct: 227 QEYTA-PKGMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYIYGEWFPDSTCRFDEDRRYDF 285 Query: 137 FHYTNLAEGVTEQRLETDVYVPL 159 Y + E ++ ++VP+ Sbjct: 286 ARYGEQLDEHGESEIQ--LWVPV 306 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 +S + YAV +H G + + T+ + +WLP SG + L Y Sbjct: 233 SSELSTLVVPAQTYAVVKHCGPVVHLPKTLEWFLLNWLPNSGYRGIDGYELECYPANYNQ 292 Query: 146 VTEQRLETDVYVPL 159 + + ++P+ Sbjct: 293 H-DTDAVMEYWIPV 305 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 11/158 (6%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRK--ETGLSPVNQSQTFGVAWDDP 62 +D I S V + N ++ + W + E GL FG+ P Sbjct: 127 VMDYKIEKKDSFRV--VTKTRKFTEENRIISIPMFWSEYCEDGLH-QKVCGMFGICL--P 181 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTVWGIIRH 121 + F + I + + G ++ +AV + VG D I + I Sbjct: 182 GEPDCKEFEYGIGCE-EKYVKQIPEGFITIDIPSYTWAVFKCVGAMPDSIQNMWRRIYSE 240 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S ++ + YT + + +++++P+ Sbjct: 241 WLPQSKYELIPGYDIELYTE--GDIKSEDYISEIWIPV 276 >UniRef50_D1BDE6 Putative transcription activator n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDE6_SANKS Length = 157 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++TLD ++ P++ V L + + + ++P + DD Sbjct: 2 SITLDRTVV--PAMTVVALRGTVPTYADEVQLWERMMPLLEAQAITPSGPGGV--IEHDD 57 Query: 62 PATTAPEAFRFDICGSVSEPIPDNR---YGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 T D+ S+ P+ + EL VAR +G D I+ I Sbjct: 58 -EYTP-----HDVELSIFVPVAPGTLAVPPLEVLELPSRDCLVARVLGSYDQITEAHRRI 111 Query: 119 ----IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 L + + + Y + V EQ L T+V PLA Sbjct: 112 DERVAAEHLTFATGEAVERKAFNLYLRTPDQVGEQDLVTEVCEPLA 157 >UniRef50_A2FCJ7 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2FCJ7_TRIVA Length = 198 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 11/127 (8%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSP--VNQSQTFGVAWDDPAT 64 V I + + + + + P ++ G+ +DDP Sbjct: 30 SVKIEHIAPVKIVYTTFIGPYKEAWKPSMQLFNEKLPDDFKPHCPGATKYIGIYYDDPKI 89 Query: 65 TAPEAFRFDICGSVSEPI---PDNRYGVSNGELTGGRYAVARHVGELDDISHTV-----W 116 T PE R I V + D + + G A H + V + Sbjct: 90 TKPEDCRSVIGFVVDDDFKLKDDANGKMHVDTIEIGE-AACVHFPFYSMLDVIVGVMRCY 148 Query: 117 GIIRHWL 123 +I W Sbjct: 149 PLIGKWF 155 >UniRef50_A4BA46 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BA46_9GAMM Length = 293 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 4/84 (4%) Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG-EKMRKAPIL 136 + + P + L YAV + G +D H V ++ WLP + Sbjct: 210 IEQSKPSAPVFLEKLSLPTSDYAVLPYQGPIDHFKHAVTWLLAEWLPNADVHHSNNRFEF 269 Query: 137 FHYTNLAEGVTEQRLET-DVYVPL 159 Y + + ++P+ Sbjct: 270 ERYL--PSETAGSEMVNAEYWLPI 291 >UniRef50_C9XSP3 MerR-family transcriptional regulator n=5 Tax=Clostridiales RepID=C9XSP3_CLODC Length = 270 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 19/162 (11%) Query: 7 DVNIIDFPSIPVAMLPH--RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 DV I P + VA + + EL N +TG + F + D Sbjct: 115 DVIIKSLPKVKVASMRKVLKGYDELFNLFPNVMAEEMMKTGCTCAVPDYCFNIYHD---- 170 Query: 65 TAPEAFR---FDI--CGSVSEPIPDNRYGVSNGELTGGRYAVA-RHVGELDDISHTVWGI 118 +R D+ C ++++ + ++ + EL AV H G + T Sbjct: 171 ---GEYRETDMDVEMCQAIND-LKEDTDILKFKELDAVENAVCILHNGPYSTLGKTYADA 226 Query: 119 IRHWLPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 + W+ + K+ P Y + + +E+ T+V +P+ Sbjct: 227 FK-WIEDNKYKVVGNPR-ESYIDGIWNKESEEDWLTEVQIPV 266 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%) Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 GV D A T E F + + +P + + + +AV +I Sbjct: 188 LLGVCGKDAAITD-EEFSYFMGVRYDGEVPTD---METLVIPVSTWAVF------PNIVD 237 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + W+P S ++ P + Y + + +++VP+ Sbjct: 238 AWKRLYSEWVPTSKYELANLPCIECYYG-----PKHKPRHELWVPV 278 >UniRef50_A1TW06 Transcription activator, effector binding n=2 Tax=Acidovorax RepID=A1TW06_ACIAC Length = 156 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 14/158 (8%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSVAK----FIMWRKETGLSPVNQSQTFGVAWDDPAT 64 I+ + P A+ P C+ E + + + + G+SP G + Sbjct: 6 RIVQMEAQPAALWPVSCTREEIQQVMGRSVRALMDALAAQGVSPA------GPLFTHHLR 59 Query: 65 TAPEAFRFDICGSVSEPI-PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 + F F + V +P+ P G+ GE R A + G +D+ R W+ Sbjct: 60 RPTDTFEFHLGVPVDKPVGPGPDGGLQPGEWPAMRVARTEYRGRYEDLPQAWETFHR-WI 118 Query: 124 PASGEKMRKAPILFHYTNLAEG-VTEQRLETDVYVPLA 160 A G + + + Y E T++ PLA Sbjct: 119 GAQGVRPAED-VWERYLTGPETGSDPGGWRTELIQPLA 155 >UniRef50_Q12Q57 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12Q57_SHEDO Length = 164 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 15/135 (11%) Query: 29 LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYG 88 L + + +W G++P + D E F ++ VS + Sbjct: 31 KLPPLIGELAVWLAARGVNPAGAPFYRYLVID-----QNEEFDIEVGFPVSNHLQ-GDGR 84 Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP-------ASGEKMRKAPILFHYTN 141 V G + GRYAV H+GE D + ++ W AS ++ R L Y Sbjct: 85 VDAGVIPAGRYAVTTHIGEYDRLQDA-TANLKKWAADNNVRWDASEDESRWGARLETYLT 143 Query: 142 LAEGVT-EQRLETDV 155 Q+ +T++ Sbjct: 144 DPSEEPDPQKWQTEI 158 >UniRef50_Q8A8H8 Putative transcription activator n=9 Tax=Bacteroides RepID=Q8A8H8_BACTN Length = 156 Score = 54.9 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 11/157 (7%) Query: 7 DVNIIDFPSIPVAMLPHR----CSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ ++ P P + + + + + + K+ G + V + D Sbjct: 6 EIMLLQQPEQPALAIEVQTYMKGMSQAIGENFVRIDSLFKKQGEVTTDIPF---VEYPDF 62 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + + + I S+P+ + + + L R V H G ++++ + W Sbjct: 63 ESLTEDRIKMIIGLKSSKPLQGDEK-IQSVILPARRIVVCLHRGNYNELAQLYNEM-TEW 120 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + +G K + +Y + V E+ T V +PL Sbjct: 121 IKTNGYKASGT-SIEYYYSNP-DVPEEEHVTRVEMPL 155 >UniRef50_B3RPD1 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RPD1_TRIAD Length = 201 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 6/82 (7%) Query: 16 IPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDIC 75 + V H + + + L P + T G+ +DDP T E R + Sbjct: 45 LSVFYKVHVGAYRNVGTIFDE------ARKLLPSSDGSTLGIYYDDPNTVKEENCRSVVA 98 Query: 76 GSVSEPIPDNRYGVSNGELTGG 97 V E V L G Sbjct: 99 AVVGENGSPIDASVKQRYLQAG 120 >UniRef50_Q81D65 Transcriptional regulator, MerR family n=59 Tax=Bacillus cereus group RepID=Q81D65_BACCR Length = 270 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 13/162 (8%) Query: 3 NLTLDVNIIDFPSIPVAMLPHR-CSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + V+I + P VA + S + + + +S S + V D Sbjct: 115 EMNYHVSIKEIPERTVASVRKIIPSYNCEGDLWSVLMQEIQMKNISIAQPSYSIAVFHDH 174 Query: 62 PATTAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 E D+ + I +N V+ + A G + ++ V Sbjct: 175 ------EYKENDVDVEIQLSILGKHENTKDVTFKNMESTNVASITVNGSYEQMT-AVNEA 227 Query: 119 IRHWLPASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 W+ G K+ P+ Y + + T+V P+ Sbjct: 228 AAKWIETEGYKLAG-PMFNIYHVSPAMELDPNKWVTEVCYPI 268 >UniRef50_B8CLS6 Transcriptional regulator, AraC family n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CLS6_SHEPW Length = 303 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 7/101 (6%) Query: 65 TAPEAFRFDICGSVSEPIPDN------RYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 T ++ R+ + + + + + YAV + G +++ S V + Sbjct: 201 TEQQSIRYWAGLELDAEQRQSLQTLLTEEKLCSLTIPSQEYAVVAYSGTVNEFSQLVEWL 260 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLP SG L Y + +T+ + + ++P+ Sbjct: 261 ICDWLPESGFVSLDGYELESYGKITSTITDLKHM-EYWLPI 300 >UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus RepID=B9CPS5_STACP Length = 165 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 24/171 (14%) Query: 1 MTNLTLDVNIIDFPSIPVA-MLPHRCSPELLNYSVAKFIM-WRKETGL---------SPV 49 M + +D I + S V H + ++ + W + S Sbjct: 6 MGEMNMDYRIENIESTKVIGAYRH---YKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDN 62 Query: 50 NQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-L 108 + GV E D V+ D G+ L GG+Y V G Sbjct: 63 QLNGLLGVCL------PKEDRTMDYAIGVTS-TEDPHDGLETFNLEGGKYLVVEAKGPVP 115 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + T+ I +P ++++AP Y + T++++P+ Sbjct: 116 KSVQQTMNDIHHELIPRENIEIKQAPFFELY--GPGDTQSESYVTEIWMPI 164 >UniRef50_D0WQA2 Transcriptional regulator, MerR family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQA2_9ACTO Length = 272 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 16/163 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++ + P+ V L + + + + G+ P+ D Sbjct: 120 IMAEITVTTHPAQRVVALRTTIDTYADEHKAWIAAMEAIRTQGI-PLASGLCGATFHD-- 176 Query: 63 ATTAPEAFR-FDICGSVSEPIPDNR---YGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 +R D+ V EP+ + ++ E+ + AVA G D V Sbjct: 177 -----LEYREADVDIEVWEPVGPDAVAADPLTIREIPEQKVAVATFRGGYDQFGP-VNEE 230 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPLA 160 + ++ ASG + P+ Y T+V VP+A Sbjct: 231 LAEYIAASGLEFAG-PMYNRYLVGPADTQNTDEYVTEVCVPVA 272 >UniRef50_B5JDT8 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDT8_9BACT Length = 268 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 11/137 (8%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V + PS+ VA + + ++ + +D Sbjct: 123 EVEEKELPSMLVAGYRMCGRYSDVGKGFKVLGRKAGRH-----LKGKSMCLYYD--GEYR 175 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + F+ C V + D + EL+GG H G + +S + + + Sbjct: 176 EDDANFEPCFEVKREVEDED--LQCRELSGGTALTLLHKGPYERLSESYAKLFAA-VKRG 232 Query: 127 GEKMRKAPILFHYTNLA 143 G ++ P Y Sbjct: 233 GCRVL-CPSREVYHKGP 248 >UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA82_GEOSW Length = 160 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 84 DNRYGVSNGELTGGRYAVARHVGE-LDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNL 142 D G+ E+ ++ V G D + I WLP+S + P L YT+ Sbjct: 85 DTPNGLLKFEVPASKWVVFEVHGPMPDAMQKAWNQIFSEWLPSSSYEHAGTPALEVYTDE 144 Query: 143 AEGVTEQRLETDVYVPL 159 +++++P+ Sbjct: 145 NPLSP--DFYSEIWIPV 159 >UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YQP0_9CHLB Length = 161 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 13/137 (9%) Query: 26 SPELLNYSVAKFIMWRKETGLSPVNQSQTFGV--AWDDPATTAPEAFRFDICGSVSEPIP 83 S + F + + S +GV D + +CG + Sbjct: 29 SSRSIPEQWEAFRALGR---IPGQTGSAFYGVMCGHD------AGGIEY-LCGVEVDSFA 78 Query: 84 DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLA 143 + + YAV H G++ I T I+ W P G + P Y + Sbjct: 79 GLPSELGRMRILEEEYAVFGHSGQISTIRTTWERILHEWFPNGGYRSANKPDFEVY-DQR 137 Query: 144 EGVTEQRLETDVYVPLA 160 + ++++ ++ Sbjct: 138 FDTRTGSGDVEIWIAIS 154 >UniRef50_A3I0M8 Transcriptional regulator, AraC family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0M8_9SPHI Length = 162 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 F+ C ++ G L GG+YA + + +I + G + +WLP S ++ Sbjct: 70 FEKCAAIEIVKDACPDGFEEIVLDGGKYATFEYARNMGEIQTILMGFLNNWLPNSAFELD 129 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + + +E +++P+ Sbjct: 130 DRNHFETFGPDYDPFSVDSVEV-IWIPI 156 >UniRef50_A3U5E2 Probable transcriptional regulator n=1 Tax=Croceibacter atlanticus HTCC2559 RepID=A3U5E2_9FLAO Length = 165 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 96 GGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFH--YTNLAEGVTEQRLET 153 G YAV + G D+ I WLPAS K+ P T + Q Sbjct: 99 QGDYAVFTYTGLASDVYKAYQFIYSKWLPASKYKLSNRPHFAKMDSTYNPNDPSSQE--- 155 Query: 154 DVYVPL 159 ++++P+ Sbjct: 156 ELWIPI 161 >UniRef50_Q7UFQ8 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UFQ8_RHOBA Length = 357 Score = 52.9 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 75 CGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAP 134 G +++ G + G++ + RH+GE + + G I ++ KM KA Sbjct: 273 AGYLADAGTPVPDGCVADTVPAGKFLLVRHIGEYAHLGNAWSGGI-QYIRYKKLKMAKAI 331 Query: 135 ILFHYTNLAEGVTEQRLETDVYVPL 159 Y N E + L TDVY+ L Sbjct: 332 GCEVYRNDPETTETKDLITDVYIAL 356 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 18/171 (10%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMW---------RKETGLSPVNQSQT 54 + ++ II S + + + +S W K + Sbjct: 127 IIMEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQFPPRHGE 186 Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARH-----VGELD 109 +G+ + + F + + V + ++ YAV +D Sbjct: 187 YGICVN--TNMETDEFSYILGVEVLS-FDHAMIDMYTLDVPAATYAVFTTPSVEDHDFVD 243 Query: 110 DISHTVWGIIRHWLPASGEKMRKAPI-LFHYTNLAEGVTEQRLETDVYVPL 159 I T I+ W P SG ++ + Y + ++YVP+ Sbjct: 244 SIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSKFSMEIYVPI 294 >UniRef50_C8NNM0 DNA gyrase inhibitor n=2 Tax=Corynebacterium efficiens RepID=C8NNM0_COREF Length = 172 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 19/153 (12%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 ++ F P+A + + + A + G++P+ F + P T Sbjct: 29 VVSFEDFPMAEMT-----TAFDTTFAALFPALVQAGVNPIG--APFSLHHRLPTETVT-- 79 Query: 70 FRFDICGSVSEPIP-----DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 F++ + P+ DN V L G+ A ++GE + ++ L Sbjct: 80 --FELGIPIDAPLKKEITADNGLVVGPSILPAGKLARVSYMGEYHGLGPAWNSFLQG-LG 136 Query: 125 ASGEKMRKAPILFHYTNLAEG-VTEQRLETDVY 156 SGE++ P Y + + TD+Y Sbjct: 137 ESGEQLA-FPFWEVYITDPSQAIEPAVMRTDLY 168 >UniRef50_A5ULS6 Transcriptional activator n=2 Tax=Methanobrevibacter smithii RepID=A5ULS6_METS3 Length = 153 Score = 52.6 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + + P +A++ ++ L ++K + W + + + + F + + + Sbjct: 1 MQIQDKIIPDQKIAVINYKGPISDLEVLLSKLMDWVETEEIKTIG--EPFIIYYSPRHSV 58 Query: 66 APEAFRFDICGSV-----SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 FD+ ++ ++ I +G L+G H G +D+I + +++ Sbjct: 59 NQGDAVFDVGIAIEGNAQAKDIIKTADLFEHGVLSG------IHEGSIDNILDSYDTMVK 112 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + +P N+ +E+ T++ +P+ Sbjct: 113 VAQENN-YDIIGSPTEVLVKNIHNADSEEEYITEIRLPI 150 >UniRef50_B5EUU0 Transcriptional regulator, AraC family n=3 Tax=Aliivibrio RepID=B5EUU0_VIBFM Length = 299 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 79 SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFH 138 ++ + ++ + + YAV G D S +V +I WLP SG + + L Sbjct: 219 TDELNQHKADLQIITIPEQEYAVLPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEI 278 Query: 139 YTNLAEGVTEQRLETDVYVPL 159 Y + T+ ++ + ++P+ Sbjct: 279 YQSS---TTQGVIDVEYWLPI 296 >UniRef50_Q49ZZ7 Putative uncharacterized protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49ZZ7_STAS1 Length = 154 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 23/165 (13%) Query: 6 LDVNIIDFPSIPVA-----MLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGV--- 57 ++ I + P++ V + + E + +F K+ L + +Q G+ Sbjct: 1 MNYIIEELPTLSVIGEKKIYATGQKAQENIFMFWMEFDDSGKKDQLLELGNNQLPGLLGV 60 Query: 58 --AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHT 114 D + I + SE D + EL GGRY V G + I Sbjct: 61 CKPHD------SGEIHYLIGVT-SEHKYDKWRNI---ELEGGRYLVFDAKGPVPESIKKA 110 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + I + LP ++R AP Y A E T++++P+ Sbjct: 111 MQQINKDILPKLDYEIRHAPFFELYKEGAIR--EDDYVTEIWLPI 153 >UniRef50_C8X6Z7 Transcriptional activator ligand binding domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X6Z7_NAKMY Length = 153 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 12/152 (7%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM--W---RKETGLSPVNQSQTFGVA 58 +T V ++ +A + +P ++ + I W R GL + Sbjct: 1 MTDPVTVLTVHPRSLAAVRCEVAPGEVSTAWGPAIGKVWDFIRSRPGLWTDGHNIFV--- 57 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 + P + V+ P P + L GG AVA H G D + T I Sbjct: 58 YHHPDQ-PGAPIVCEFGVEVTGPFPPVGDVYATATL-GGEAAVAVHRGRYDRMPETYRAI 115 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQR 150 W+ A+ + Y + + Sbjct: 116 -TEWMAANRRESAGH-SWEIYGDPTPDPSRTE 145 >UniRef50_D1Z1K4 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1K4_METPS Length = 154 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%) Query: 73 DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDISHTVWGIIRHWLPASGEKMR 131 ++ V++ + V GE+ G+ A + G D + + + G Sbjct: 68 EVGFPVAKKLQAKGD-VKPGEIPAGKVATTVYTGPYGDGMKEAYEAL-SKLVEEKGLAPT 125 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 + Y N ++L+T + PL Sbjct: 126 GV-VYEIYFNSPMDTPPEKLQTQIVFPL 152 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=D... 176 3e-43 UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=... 175 6e-43 UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=... 171 9e-42 UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=D... 170 1e-41 UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n... 168 5e-41 UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=D... 167 1e-40 UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=P... 166 2e-40 UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=D... 166 2e-40 UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=B... 165 5e-40 UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=... 164 1e-39 UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax... 164 1e-39 UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=... 162 3e-39 UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepI... 161 5e-39 UniRef50_A4BA20 Transcriptional regulator, AraC family protein n... 161 7e-39 UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Pa... 161 7e-39 UniRef50_A3Y658 Transcriptional regulator, AraC family protein n... 160 1e-38 UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax... 160 1e-38 UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=G... 160 1e-38 UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n... 160 1e-38 UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=B... 160 1e-38 UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax... 160 2e-38 UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Des... 159 3e-38 UniRef50_B8DR99 Transcription activator effector binding n=2 Tax... 158 5e-38 UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=R... 158 6e-38 UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=P... 158 7e-38 UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=De... 157 9e-38 UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=D... 157 1e-37 UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=... 156 2e-37 UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=... 156 2e-37 UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=S... 156 3e-37 UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible D... 155 3e-37 UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=P... 155 4e-37 UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=P... 155 5e-37 UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=R... 155 7e-37 UniRef50_A9D6E7 Putative AraC family transcriptional regulator n... 154 7e-37 UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n... 154 1e-36 UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Bu... 153 1e-36 UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=S... 153 2e-36 UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Ga... 152 3e-36 UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=... 151 8e-36 UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Ba... 150 1e-35 UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Fla... 149 3e-35 UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=R... 148 5e-35 UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes Re... 148 7e-35 UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix p... 148 7e-35 UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n... 145 4e-34 UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Ca... 145 5e-34 UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curviba... 145 6e-34 UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n... 145 6e-34 UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n... 145 7e-34 UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=F... 143 1e-33 UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Ple... 143 2e-33 UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Mic... 142 3e-33 UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=R... 141 5e-33 UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax... 141 5e-33 UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides R... 141 7e-33 UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseo... 140 2e-32 UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=R... 138 4e-32 UniRef50_D1B3I6 Transcription activator effector binding protein... 138 4e-32 UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Cl... 138 6e-32 UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla ma... 136 3e-31 UniRef50_A1VFK9 Transcription activator, effector binding n=3 Ta... 136 3e-31 UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n... 135 4e-31 UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n... 134 1e-30 UniRef50_A3Y825 Transcriptional regulator, AraC family protein n... 132 3e-30 UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bact... 131 7e-30 UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=G... 131 1e-29 UniRef50_A3YG43 Transcriptional regulator, AraC family protein n... 130 2e-29 UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n... 130 2e-29 UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=T... 129 2e-29 UniRef50_B6R4C2 Transcription activator, effector binding n=1 Ta... 128 6e-29 UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=B... 128 7e-29 UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein ... 127 1e-28 UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=X... 127 1e-28 UniRef50_C5BHP3 Bacterial transcription activator, effector bind... 126 2e-28 UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax... 126 2e-28 UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=A... 126 2e-28 UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides Re... 125 4e-28 UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bact... 125 5e-28 UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Ta... 125 5e-28 UniRef50_A6TUU5 Transcription activator, effector binding n=1 Ta... 124 8e-28 UniRef50_Q2RP02 Transcription activator, effector binding n=1 Ta... 124 8e-28 UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=... 123 2e-27 UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Ta... 122 3e-27 UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paen... 121 5e-27 UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=C... 120 2e-26 UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia r... 120 2e-26 UniRef50_O34775 SPBc2 prophage-derived putative transcriptional ... 119 3e-26 UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=... 119 3e-26 UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=L... 118 5e-26 UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Mag... 118 6e-26 UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus... 118 6e-26 UniRef50_Q12LA7 Transcription activator, effector binding n=1 Ta... 118 8e-26 UniRef50_Q2C165 Putative transcriptional regulator (AraC family ... 116 3e-25 UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bact... 116 3e-25 UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseud... 116 3e-25 UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methano... 114 7e-25 UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bactero... 114 8e-25 UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methano... 114 9e-25 UniRef50_A6LWY8 Transcription activator, effector binding n=5 Ta... 113 2e-24 UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=B... 112 3e-24 UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=H... 112 4e-24 UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax... 111 5e-24 UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax... 111 6e-24 UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobact... 111 7e-24 UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=A... 111 1e-23 UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulato... 110 2e-23 UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseud... 109 2e-23 UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=B... 109 3e-23 UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=S... 108 5e-23 UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria... 108 7e-23 UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales ... 108 7e-23 UniRef50_C8Q848 Transcription activator effector binding n=1 Tax... 108 8e-23 UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=P... 107 1e-22 UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=P... 107 1e-22 UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vi... 107 1e-22 UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria... 106 2e-22 UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=... 105 4e-22 UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4S... 105 5e-22 UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=... 104 7e-22 UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Cl... 104 1e-21 UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=A... 104 1e-21 UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family ... 103 2e-21 UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=S... 103 2e-21 UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=C... 103 3e-21 UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 T... 103 3e-21 UniRef50_A6UD97 Transcription activator effector binding n=14 Ta... 102 4e-21 UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=M... 102 5e-21 UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteri... 101 5e-21 UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=C... 101 7e-21 UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=... 101 7e-21 UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=M... 101 8e-21 UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=C... 101 1e-20 UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=C... 100 1e-20 UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=... 100 2e-20 UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax... 100 3e-20 UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=M... 100 3e-20 UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax... 100 3e-20 UniRef50_A6LWV9 Transcription activator, effector binding n=1 Ta... 99 4e-20 UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=B... 99 4e-20 UniRef50_P96662 Uncharacterized HTH-type transcriptional regulat... 98 7e-20 UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Ch... 98 8e-20 UniRef50_A0M275 Effector binding transcriptional activator prote... 98 9e-20 UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax... 98 1e-19 UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax... 98 1e-19 UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales ... 98 1e-19 UniRef50_D2R723 Transcription activator effector binding protein... 97 1e-19 UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=P... 97 2e-19 UniRef50_Q81D65 Transcriptional regulator, MerR family n=59 Tax=... 97 2e-19 UniRef50_Q28T08 Transcription activator effector binding n=1 Tax... 97 2e-19 UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=u... 96 3e-19 UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Ta... 96 3e-19 UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium Re... 96 3e-19 UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavoba... 96 4e-19 UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sp... 96 5e-19 UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kyto... 96 5e-19 UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrop... 96 5e-19 UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 ... 95 5e-19 UniRef50_Q0W824 Putative transcription regulator (MerR family) n... 95 5e-19 UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=S... 95 6e-19 UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=F... 95 6e-19 UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax... 95 6e-19 UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseu... 95 7e-19 UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Ca... 95 8e-19 UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla ma... 95 8e-19 UniRef50_C5DA82 Transcription activator effector binding n=1 Tax... 94 1e-18 UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WA... 94 2e-18 UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 ... 94 2e-18 UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC... 94 2e-18 UniRef50_C9RC23 Transcriptional activator ligand binding domain ... 94 2e-18 UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B... 93 2e-18 UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI... 93 2e-18 UniRef50_B8I6X2 Transcriptional regulator, MerR family n=26 Tax=... 93 3e-18 UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 T... 93 3e-18 UniRef50_D0WQA2 Transcriptional regulator, MerR family n=1 Tax=A... 93 3e-18 UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=A... 93 3e-18 UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus p... 93 3e-18 UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=... 93 3e-18 UniRef50_A5FHW5 Transcription activator, effector binding n=2 Ta... 93 4e-18 UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n... 92 5e-18 UniRef50_UPI0001C41F50 transcriptional regulator n=1 Tax=Methano... 92 5e-18 UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus ... 92 5e-18 UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1... 92 6e-18 UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax... 92 7e-18 UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=A... 91 7e-18 UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID... 91 8e-18 UniRef50_C3JZ42 Putative AraC family transcriptional regulator n... 91 8e-18 UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepI... 91 1e-17 UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=B... 91 1e-17 UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostri... 90 2e-17 UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=C... 90 2e-17 UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio ... 90 2e-17 UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=A... 90 3e-17 UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 ... 90 3e-17 UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=B... 90 3e-17 UniRef50_A3XLX8 Probable transcription regulator, MerR family pr... 90 3e-17 UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytopha... 90 3e-17 UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokd... 89 4e-17 UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobac... 89 4e-17 UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family pr... 89 4e-17 UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lacto... 89 6e-17 UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2... 88 7e-17 UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19... 88 7e-17 UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales ... 88 7e-17 UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia... 88 8e-17 UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=C... 88 1e-16 UniRef50_B1QW88 Transcriptional regulator n=2 Tax=Clostridium bu... 88 1e-16 UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staph... 87 1e-16 UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=H... 87 1e-16 UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=... 87 2e-16 UniRef50_C3RJJ6 Transcriptional regulator n=2 Tax=Bacteria RepID... 87 2e-16 UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=B... 87 2e-16 UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Ta... 87 2e-16 UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio ... 86 2e-16 UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax... 86 2e-16 UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhod... 86 3e-16 UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax... 86 3e-16 UniRef50_B9QWG5 Bacterial transcription activator, effector bind... 86 3e-16 UniRef50_B7GST4 Transcription activator, effector binding n=1 Ta... 86 3e-16 UniRef50_D1AKN1 Transcription activator effector binding protein... 86 4e-16 UniRef50_C9XSP3 MerR-family transcriptional regulator n=5 Tax=Cl... 86 4e-16 UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 T... 86 4e-16 UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_... 85 6e-16 UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=C... 85 9e-16 UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID... 85 1e-15 UniRef50_Q7UJN1 Probable transcription regulator, MerR family n=... 85 1e-15 UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=C... 85 1e-15 UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID... 84 1e-15 UniRef50_D1AJG5 Transcription activator effector binding protein... 84 1e-15 UniRef50_B8H9I7 Transcription activator effector binding n=1 Tax... 84 1e-15 UniRef50_B5JGT3 Bacterial transcription activator, effector bind... 84 2e-15 UniRef50_D2AZ80 Putative transcriptional regulator, MerR family ... 84 2e-15 UniRef50_D1AG33 Transcriptional activator ligand binding domain ... 84 2e-15 UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellv... 83 2e-15 UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepI... 83 2e-15 UniRef50_A1TW06 Transcription activator, effector binding n=2 Ta... 83 2e-15 UniRef50_UPI0001C318BF transcriptional activator ligand binding ... 83 2e-15 UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 T... 83 2e-15 UniRef50_A8L3Q5 Transcriptional regulator, MerR family n=6 Tax=A... 83 2e-15 UniRef50_B1I236 Transcription activator, effector binding n=1 Ta... 83 3e-15 UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepI... 83 3e-15 UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsuk... 83 3e-15 UniRef50_C9AYK3 MerR-family transcriptional regulator n=6 Tax=Fi... 83 4e-15 UniRef50_D2NAV2 Transcriptional regulator n=1 Tax=Staphylococcus... 83 4e-15 UniRef50_A0JSY2 Transcription activator, effector binding n=1 Ta... 82 4e-15 UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytoph... 82 5e-15 Sequences not found previously or not previously below threshold: UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=r... 98 7e-20 UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostri... 86 3e-16 UniRef50_A6M032 Transcription activator, effector binding n=19 T... 83 2e-15 UniRef50_A8TCQ3 Putative transcriptional regulator, MerR family ... 83 4e-15 >UniRef50_D1UAH3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UAH3_9DELT Length = 285 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++ ++++ + V + H + N++ + W GL ++ + DDP Sbjct: 130 EIVMEASVVNLEEMNVVFVRHTGPYKDCNHAWSTLCGWAGPRGLVNA-DARILALCHDDP 188 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R+D C +V+ + + + + GGRYA H G D+ T + W Sbjct: 189 DVTPEDKIRYDACITVAG-QTEVQAPIGMKTIAGGRYAKTLHKGPYSDLHKTYAQLCGQW 247 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P +G + + Y N + + L T+VYVPL Sbjct: 248 APQNGCEADAGASIEIYLNTPDKTAPEELRTEVYVPL 284 Score = 40.2 bits (93), Expect = 0.024, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 1/71 (1%) Query: 90 SNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQ 149 S L RH G D +H + W G A IL + + E Sbjct: 136 SVVNLEEMNVVFVRHTGPYKDCNHAWSTLCG-WAGPRGLVNADARILALCHDDPDVTPED 194 Query: 150 RLETDVYVPLA 160 ++ D + +A Sbjct: 195 KIRYDACITVA 205 >UniRef50_B5XU59 Transcriptional regulator, AraC family n=33 Tax=Gammaproteobacteria RepID=B5XU59_KLEP3 Length = 289 Score = 175 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 87/159 (54%), Positives = 115/159 (72%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++DVNII FP+ +A+L HR SP+L+N + A+FI WRK +GLSPV S T+G+AWDD Sbjct: 131 EQTSMDVNIISFPTTRIAVLQHRGSPDLVNTTAARFIAWRKTSGLSPVATSDTWGIAWDD 190 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TT EAFRFDICG+V+ P+ +N +GV NGE+ GGR AV RH G LD ++++VW + R Sbjct: 191 PQTTPQEAFRFDICGTVAGPVGENAFGVINGEIPGGRCAVVRHHGSLDTLANSVWFLYRD 250 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLPASGE +R P+ F Y N V E L+TD+Y+PLA Sbjct: 251 WLPASGETLRDFPVYFRYLNFVHEVAEHELQTDIYLPLA 289 >UniRef50_Q88KW6 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q88KW6_PSEPK Length = 289 Score = 171 bits (433), Expect = 9e-42, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 97/157 (61%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++T+ + I++F VA L H+ P L++ SVA+F WR +G SPV S+TFG+ +D+P Sbjct: 132 SITMQIRIVNFAETHVAALEHQGPPGLVSESVARFRQWRMHSGQSPVASSRTFGIPYDNP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TT AFRF +CG + E + N +GV + GR AV RH G D I T++ + R W Sbjct: 192 DTTPAHAFRFAVCGEIDEAVQPNDFGVHERVIPAGRCAVIRHTGSPDYIGETIYPLYRDW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP+S E++R P+ FHY ++ ++ +TD+YVPL Sbjct: 252 LPSSNEELRDHPLFFHYLSVYPETPLEQWQTDIYVPL 288 >UniRef50_Q72FD7 Transcriptional regulator, AraC family n=3 Tax=Desulfovibrio vulgaris RepID=Q72FD7_DESVH Length = 326 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 4/159 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + T+DV I + P VA L H + + + W GL +T GV+WD Sbjct: 167 SATMDVRIEEMPRFHVAYLRHVGPYTEATIGPVWGRLMEWAGARGLLRPGV-KTLGVSWD 225 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T PE R+D C ++ P + G + E+ GG YAV R + + Sbjct: 226 DPEVTPPEHCRYDACIVIA-PGVEVDGGCATQEVGGGLYAVYRRPVACGQFTEAWNELFG 284 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P Y ++ + E + + +P+ Sbjct: 285 QWLPTSGMQADDRPCFELYNDVMQAPPEGPWDVSICMPV 323 >UniRef50_A3ZMZ0 Transcriptional regulator, AraC family protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZMZ0_9PLAN Length = 286 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 7/165 (4%) Query: 1 MTNLTL---DVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTF 55 M+ + V + PS +A + E LN + + + + E L + Sbjct: 123 MSTVNYTAAHVRLETQPSRRLAYIRVVGKYDFENLNPAFGRILQFAAENNLMTD-CTACV 181 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 GV DDP TAPE R D+ +V + + + G+ AV RH G D + Sbjct: 182 GVYHDDPDVTAPEKQRADVGVTVDDQFQPTGE-IQVQTIPSGKCAVLRHQGHYDTLHEAY 240 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG + P Y N A + + TD+ VPLA Sbjct: 241 RWFFSVWLPDSGHEPGDFPAYEIYVNDASQLPPDQWLTDICVPLA 285 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPATT 65 ++ + PS A+L H+ + L+ + F W ++G P + + +D + Sbjct: 213 EIQVQTIPSGKCAVLRHQGHYDTLHEAYRWFFSVWLPDSGHEP-GDFPAYEIYVNDASQL 271 Query: 66 APEAFRFDICGSVSE 80 P+ + DIC ++E Sbjct: 272 PPDQWLTDICVPLAE 286 >UniRef50_C6BZC0 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC0_DESAD Length = 297 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 3/154 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I I V + H + + K W GL +++ G+++DDP T Sbjct: 145 EVEIRTRDEIQVVFIRHVGPYPKVTKAWEKLCGWGFGKGLF-SEKTEFLGLSYDDPDITP 203 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 R+D C +V+E + + + GG+YAV H G + + + WLP+S Sbjct: 204 EGKIRYDACFTVNEEVETPPE-MGLQVIPGGKYAVTTHYGPYEKMHGIYRELYGKWLPSS 262 Query: 127 GEKMRKA-PILFHYTNLAEGVTEQRLETDVYVPL 159 G +++ P Y + V + T++++ + Sbjct: 263 GYQLKNTIPSFEKYIKVPPDVPPEEAVTEIWLAV 296 >UniRef50_Q31GA4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q31GA4_THICR Length = 288 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 93/157 (59%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N+ +++++++F +A+L HR E + S+ F WRK T SPV ++FG+ +DDP Sbjct: 131 NIVMNIDLVEFDHTLIAVLEHRGPAEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDP 190 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T P FRFD+C V E IPDN G+ N + GR AV RH G L+ I V + +W Sbjct: 191 DTVEPAKFRFDLCAEVKETIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW 250 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SGE++R P FHYTNL E L TD+Y+PL Sbjct: 251 LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPL 287 >UniRef50_B8FN17 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FN17_DESAA Length = 290 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +D+ I +FP + V + H E + K ++Q G+ +DDP T Sbjct: 138 MDIRIEEFPPLDVVFIRHTGPYEECGIAWEKLCSHPDVAKELG-PETQAIGICYDDPDIT 196 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + R D+C + P G+ + GG YAV H G + + + WLP+ Sbjct: 197 EADKIRMDVCVTAP-PSLSPPEGMEKQTIKGGEYAVLTHHGPYEGLHDCYRWLFGEWLPS 255 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + AP L Y N E V Q L T++ VPL Sbjct: 256 SGREANYAPSLEVYVNSPEEVAPQDLITEIRVPL 289 >UniRef50_B3QWJ9 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=B3QWJ9_CHLT3 Length = 331 Score = 165 bits (417), Expect = 5e-40, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 5/157 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSV----AKFIMWRKETGLSPVNQSQTFGVAWDDP 62 V + D P + VA + H + + K + W GL ++ V DDP Sbjct: 173 QVTVKDMPEMTVAYVRHIGAYKSNEALFQGLFEKLMTWAGPRGLLRFPETICLSVYHDDP 232 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R +C SV P + V + GG+YAV + + + + W Sbjct: 233 NITDEQKLRTSVCISVP-PNTEVDGEVGKMTIPGGKYAVGHFEIQSSEYEASWNALWSAW 291 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG + Y N E + ++ VP+ Sbjct: 292 LPESGYQPDDRLSYEIYLNNPNTHPEGKHIVEICVPV 328 >UniRef50_B2SZ92 Transcriptional regulator, AraC family n=12 Tax=Proteobacteria RepID=B2SZ92_BURPP Length = 314 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 61/161 (37%), Gaps = 5/161 (3%) Query: 4 LTL-DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T+ +V I I V + H + + W + L Q + GV +DDP Sbjct: 155 MTMREVVIRHVEPIEVLSVDHVGPYMQIGKAFDALFGWLAKHNLL-AGQMRMVGVYYDDP 213 Query: 63 ATTAPEAFRFDICGSVSEPIPD---NRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 A R + P+ VS + GG YAV RH G D+ + Sbjct: 214 GVVAESELRSKAGVLLPHPVQASVTVSPPVSVAHVKGGEYAVLRHRGPYSDMRAAYEWLY 273 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WL SG + AP+ Y N + L T++ +PLA Sbjct: 274 GTWLVQSGREAADAPVFEEYLNSPKDTAPADLVTEICLPLA 314 >UniRef50_Q8XBS4 Probable transcriptional regulator ygiV n=59 Tax=Enterobacteriaceae RepID=YGIV_ECO57 Length = 160 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 157/160 (98%), Positives = 159/160 (99%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MTNLTLDVNIIDFPSIPVAMLPHRC PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD Sbjct: 1 MTNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHT+WGIIR Sbjct: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIR 120 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLET+VYVPLA Sbjct: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPLA 160 >UniRef50_B8H068 Transcriptional regulator, AraC family n=13 Tax=cellular organisms RepID=B8H068_CAUCN Length = 296 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 MT DV I+DFP PVA++ H P LL ++ +FI WR+ GL P + TF V D Sbjct: 136 MTFTDDDVRIVDFPDTPVAVMRHEGDPALLGDTIRRFIAWRRAAGLPPRVSA-TFNVFHD 194 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T E +R D+C + + + N GV++G + GG AV R +G DD+ + Sbjct: 195 DPDDTPAEQYRLDLCAA-TARVASNPDGVTSGVIPGGPCAVLRQIGSSDDLRAASRFLYG 253 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG ++R AP + V E TD+++PL+ Sbjct: 254 EWLPRSGRELRDAPFFAQRVSFFPDVPEHEAVTDLFLPLS 293 >UniRef50_B2HTR6 DNA gyrase inhibitor n=6 Tax=Proteobacteria RepID=B2HTR6_ACIBC Length = 283 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 99/156 (63%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + L ++VNI++ P+ +A L H SP+ + + A+FI WRKETGLSPV +S+T+G+ + D Sbjct: 125 SELKMNVNIVERPAEKIAYLSHLGSPDKVLETAAQFIAWRKETGLSPVTKSKTYGIPFAD 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T + FRFDI GS+ + +P+N YGV GE+ GRYA RH G D I +V+ I R+ Sbjct: 185 PDQTPADEFRFDIAGSIEKAVPENSYGVQTGEIPAGRYATVRHFGSHDQIKDSVYYIFRN 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 WLP E+ P+ FHY N V E L TD+Y+ Sbjct: 245 WLPEQPEEAGDYPVFFHYHNFVHEVNECDLITDIYL 280 >UniRef50_A4BA20 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A4BA20_9GAMM Length = 313 Score = 161 bits (408), Expect = 7e-39, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 1/154 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV +I+ P+IP+A++PHR +P L++++ FI WRK GLSP + S+TF + +DDP Sbjct: 158 DVTVIEMPAIPLAVMPHRGNPARLSHTLQAFIAWRKRNGLSPSH-SRTFNLVYDDPNEVT 216 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + +RFD+ + +P + G+ + + GRYA AR G D + V + WLP+S Sbjct: 217 DDDYRFDLACEIQGELPADFEGMESRTIPAGRYARARLQGSDDALERLVHSLYAEWLPSS 276 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G + P+LF V+E + TDVY+PLA Sbjct: 277 GYDLADFPLLFERVRFFPDVSEHEMITDVYLPLA 310 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 27/156 (17%) Query: 12 DFPSIPVAM-----LPHRCS---PELLNYSVAKFIMWRKETGLSPVN--QSQTFGVA--W 59 + +A + + + + + +RK GL+P + +S F V Sbjct: 84 KRAAFRLAYRAGDSITNIGYDCGYDS-PEAFNR--AFRKHFGLAPSDFRRSPDFSVWAQH 140 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 DP T R ++ +P V+ E+ AV H G +SHT+ I Sbjct: 141 YDPIQT----LR-------NQHMPAPLPDVTVIEMPAIPLAVMPHRGNPARLSHTLQAFI 189 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDV 155 W +G + + VT+ D+ Sbjct: 190 A-WRKRNGLSPSHSRTFNLVYDDPNEVTDDDYRFDL 224 >UniRef50_C6IVK7 AraC family transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVK7_9BACL Length = 304 Score = 161 bits (408), Expect = 7e-39, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + I++ P + A + H S + AK MW + L P QS G++ DDPA T Sbjct: 146 MQATIVELPLMEAAYVRHVGSYLETYQAWAKLGMWAAQHQLFPPEQS-FIGISLDDPAVT 204 Query: 66 APEAFRFDICGSVSEPI--PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 E R+D C +V + + D + L GG YA D ++ I +WL Sbjct: 205 EEEECRYDACVTVPDTLSRADAPPEIGFQTLPGGLYAKFNFYDTPDKLALLYQSIFGNWL 264 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P S L N + + + D+Y+P+ Sbjct: 265 PDSEYDPDDRYCLEFSMNDPAQDPQGKAKVDLYIPI 300 >UniRef50_A3Y658 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y658_9GAMM Length = 302 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 3/159 (1%) Query: 3 NLTLDVNIIDFP-SIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 N T V+I I + + PH+ S + + K W L ++ V + D Sbjct: 144 NSTFSVSISQLDTPIHMVVYPHQGSYMNIGQAFEKLSGWAGMRQLFDQ-TTRMMAVYFHD 202 Query: 62 PATTAPEAFRFDICGSV-SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P T R ++ E +P+ + + ++ G YAV R+ G D+ Sbjct: 203 PDNTPEAELRSLAGITLTPEKVPNLEAPLEHYDIQSGNYAVLRYKGPYADMHRAYKWFFG 262 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL SG ++ P Y N V L TD+Y+PL Sbjct: 263 TWLAESGYEVADQPPFEEYLNDPRQVAPNDLLTDIYMPL 301 >UniRef50_C6BZC1 Transcription activator effector binding n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC1_DESAD Length = 153 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +DV I +A H E + + K W G +++ +GV DDP Sbjct: 1 MDVQIWTLDPAKMAYAEHVGPYEEVGKAWEKLCAWAGPNGHFN-EKTRFYGVYHDDPGQV 59 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R + C ++ + G+ +GG+YAV H+G + + + WLP Sbjct: 60 PAAELRSEACITLENEVE-VPAGIKLKNFSGGKYAVTAHLGPYEKLKDSWTEFYEKWLPQ 118 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE +AP Y N + L T + +PL Sbjct: 119 SGETHAEAPCYEQYMNDPNNTKPEHLVTILLMPL 152 >UniRef50_Q12JT5 Transcriptional regulator, AraC family n=9 Tax=Gammaproteobacteria RepID=Q12JT5_SHEDO Length = 289 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 98/157 (62%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ +DV +I+ P VA L H +PE L + +FI WRK TGLSPV S+T+GV DP Sbjct: 132 DIIVDVKLIELPIQKVAQLEHSGAPEKLMETAKQFIEWRKTTGLSPVAISRTYGVPNGDP 191 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T A E FRF CGSV+E +PDN YGV G L GG YAV RH G D + +++G R W Sbjct: 192 NTMAAEDFRFRFCGSVNEAVPDNEYGVVTGTLAGGCYAVIRHEGSHDAMESSIYGFFREW 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG+ MR P+ FHY N V E L TD+Y+PL Sbjct: 252 LPQSGKAMRDEPLFFHYLNFIHQVDECDLLTDIYLPL 288 >UniRef50_A8TTK0 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTK0_9PROT Length = 330 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 2/156 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +TLDV+ +FP+ P A L H + + E L ++ VA+DDP+ Sbjct: 174 MTLDVSTREFPTYPFAFLRHVGRYNDIGPVFRRVAAIADERRLFG-PDTKVMMVAYDDPS 232 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T + R D S+++P D + GE+ GG YAV + G D + + ++ WL Sbjct: 233 VTDEQRLRSDAGVSLTDPTVDTGELIK-GEIAGGLYAVTVYKGPYDGLRNCYDWLMGSWL 291 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P SG + P + Y N E + L T++ VP+ Sbjct: 292 PNSGYEAADRPCVDVYLNKVEDTRPEDLLTEIRVPI 327 >UniRef50_A5G790 Transcriptional regulator, AraC family n=3 Tax=Bacteria RepID=A5G790_GEOUR Length = 294 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 4/158 (2%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + + + +F V + + + + + + L ++ G+ DDP Sbjct: 138 IVMKPEMREFSKTKVLFVRRTGAYGEAATAAWEALMGFAYKNRLMT-GETLMVGIGHDDP 196 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 A TA E R+D C + S + V + GGRYAV H G + I W Sbjct: 197 AITAEEKIRYDACVTFSGDVKPEGE-VGIQTIAGGRYAVFLHKGAYTGLPEIYRNIFAGW 255 Query: 123 LPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 L SG +R P Y N + L T+++VP+ Sbjct: 256 LATSGCTLRDQPCFEVYLNRDPRRTKPENLRTEIWVPV 293 >UniRef50_A6W3J7 Transcription activator effector binding n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W3J7_MARMS Length = 286 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 93/154 (60%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V+I+ F + +A+L HR SP + SVA F WRK +GLSP+ +S+TF + ++DPA Sbjct: 132 MTVDIVHFDTTKIALLKHRGSPSRIMESVAIFREWRKSSGLSPITKSRTFNIIYEDPAVV 191 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E FR D+ V + + DN YGV N L GGRYAV RH G D IS ++ + WLP Sbjct: 192 VAEDFRCDLAAEVMKEVDDNEYGVINSTLAGGRYAVVRHFGPYDSISRCLYFLYGEWLPD 251 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SGE++ AP F Y N V E L TDVY+PL Sbjct: 252 SGEELGDAPCFFQYHNHFPEVAEHELITDVYLPL 285 >UniRef50_Q30V01 Transcriptional regulator, AraC type n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V01_DESDG Length = 308 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 2/159 (1%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + +L L+ + + VA + H + W GL + Q+Q G+ +D Sbjct: 149 LESLGLEPEVKVLAPVRVAFVRHTGPYAQCEAAWKTLCDWAFPQGLV-MAQTQFMGICYD 207 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP TAP+ R+D C SV + + + V+ E+ GG Y A G +++ + Sbjct: 208 DPEVTAPDKIRYDACISVPDNVQA-EHPVAIREVEGGEYVCAVWKGPYTGLTNAYAALCG 266 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W SG + R AP + Y N EQ L T++ +PL Sbjct: 267 QWGGRSGREFRAAPSVEVYLNDCTSTPEQELLTEIRMPL 305 >UniRef50_B8DR99 Transcription activator effector binding n=2 Tax=Desulfovibrio RepID=B8DR99_DESVM Length = 156 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++V I P + VA + + W + + G+ DDP Sbjct: 1 MEVRIERLPELRVAGIRVLGPYAESGPKAWKLLTPWIARRQV-TSASTMFLGLCHDDPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T PE R+D +V E + Y + + YAVA H G + + + WLP Sbjct: 60 TPPERIRYDAMVTVPEDFEPDDYVI-VRVIRAREYAVAVHKGPYATLPWSWSALYWEWLP 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 SG AP + Y N E L T +Y+PLA Sbjct: 119 VSGRTPLGAPRMEAYLNDPGATPEDELLTHLYLPLA 154 >UniRef50_Q1GMI1 Transcriptional regulator, AraC family n=6 Tax=Rhodobacteraceae RepID=Q1GMI1_SILST Length = 277 Score = 158 bits (399), Expect = 6e-38, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 4/158 (2%) Query: 3 NLTL-DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 L++ +V + D P+ + +PHR + + F L P GV D Sbjct: 122 ELSMHNVTLRDEPARHLVTVPHRGPYAEIGRAFEHFSALANSRNLWPQ-LGPVLGVYLDA 180 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P + R G+ L GG+ AV G ++ + Sbjct: 181 PGEMPEDQLRSYAGAEYRGDGT--PEGLEPFALPGGKAAVLTFKGPYAGLAAAYDSLFGG 238 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE P Y N + L T++ +PL Sbjct: 239 WLPQSGETPADQPCYEIYLNDPRATAPEELLTEIVLPL 276 >UniRef50_A9BU22 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A9BU22_DELAS Length = 326 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 7/161 (4%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPE-LLNYSV-AKFIMWRKETGLSPVNQSQTFGVAW 59 + +DV IID P VA + W GLS +G+ + Sbjct: 167 EEIAMDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQT---CYGIGY 223 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 DDP+ T R+D C V + V L GGRYAVAR G+ + +++ + Sbjct: 224 DDPSLTPASKCRYDACVEVPAHFVASGQ-VDTQTLPGGRYAVARFKGKPEGLANAWMWLT 282 Query: 120 RHWLPASGEKMRKAPILFHYT-NLAEGVTEQRLETDVYVPL 159 R W+P+SG + P ++ A D+ +P+ Sbjct: 283 REWMPSSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPV 323 >UniRef50_C4XUB5 AraC family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XUB5_DESMR Length = 292 Score = 157 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 2/157 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + LDV I P + VA + H + + A GL ++ G+ DDP Sbjct: 135 MELDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPLGLFG-PDTKFIGIGHDDPQ 193 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T PE R+D C +V + + + G YA A G +++ + W Sbjct: 194 ITPPEKIRYDACMTVPDSFAGTPD-LPVASIGGRDYASAVVKGPYTNLAPAYAWLCGVWG 252 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 P G + P + Y N + +L T++ VP+ Sbjct: 253 PDCGREFAMEPSMEIYLNDPKTTPPDQLLTEILVPVG 289 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 1/84 (1%) Query: 76 GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPI 135 ++ V L + A RHVG D + P G Sbjct: 126 LPPAKEFVIMELDVVIKTLPLMKVACVRHVGPYDQCEPAWASLCAKAGPL-GLFGPDTKF 184 Query: 136 LFHYTNLAEGVTEQRLETDVYVPL 159 + + + +++ D + + Sbjct: 185 IGIGHDDPQITPPEKIRYDACMTV 208 >UniRef50_B8DRY5 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRY5_DESVM Length = 436 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 6/160 (3%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++V + + P+ VA L H E + + + W + GL FGV+WD+P Sbjct: 275 VMNVEVAERPACRVAYLRHIGPYASETIGPVWGRLMAWAGQRGLMRPGVPG-FGVSWDNP 333 Query: 63 ATTAPEAFRFDICGSVSEPIPD---NRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 T PE R+D C ++ + G+S L GG YA R + + + Sbjct: 334 EVTPPENCRYDACIAIGPEVDALELAEAGISVQTLPGGLYAEYRSMISCNGFFRAWNDMY 393 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLPASG + P Y ++ E + + V + Sbjct: 394 TQWLPASGWQCDDRPGYELYHDMLGCPAEGPWDVGICVAV 433 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 31/118 (26%), Gaps = 20/118 (16%) Query: 47 SPVNQSQTFGVAWDDPATT--APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARH 104 SP D P P++ R D+ V E R A RH Sbjct: 249 SPHGDVPWLA---DGPPHVRLDPDSTRSDVM------------NVEVAERPACRVAYLRH 293 Query: 105 VGEL--DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +G + I ++ W G P + E + D + + Sbjct: 294 IGPYASETIGPVWGRLMA-WAGQRGLMRPGVPGFGVSWDNPEVTPPENCRYDACIAIG 350 >UniRef50_B7VT37 Putative AraC-family regulatory protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VT37_VIBSL Length = 280 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 4/160 (2%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWD 60 ++ +++N++D S V + + + + L ++ G++ D Sbjct: 122 EDIKMNINVVDRKSTEVLYSRGSGKYNDAAATAWGQLMPFVYSNRLI-QPETIMIGISHD 180 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T + R+D C ++ + G+ + GG+YA A H G + +S ++ Sbjct: 181 DPNITLVDNIRYDACATIVTEME-LPEGIDRKTILGGKYAKALHKGTYEKLSEAYSYLLL 239 Query: 121 HWLPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 WLP SG ++R P Y N + L+T++Y+P+ Sbjct: 240 KWLPDSGFELRDQPCFEVYLNRDPRRTKPENLKTEIYIPI 279 >UniRef50_B1JSX5 Transcriptional regulator, AraC family n=16 Tax=Burkholderia RepID=B1JSX5_BURCC Length = 293 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 3/155 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I P++ + H + + + + W + GL ++ G+ +DDP TT Sbjct: 139 EVEIRRLPALRGYAVTHTGAYMKVGDAFERIGAWVGQHGLIGPG-AKMIGIFYDDPDTTP 197 Query: 67 PEAFRFDICGSVSEPIPDNRY--GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 R C ++ PD V + GG YAV H G D+ + WL Sbjct: 198 EAQLRAKACFMPADGAPDIAPVPPVERVTIAGGEYAVLLHTGPYADLKTAYQWLYGDWLR 257 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + AP Y N L T++++PL Sbjct: 258 HSGREAADAPPFELYLNTPMDTAPADLRTEIHLPL 292 >UniRef50_A9GLA7 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GLA7_SORC5 Length = 346 Score = 156 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 5/161 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 ++V + PS VA + + + + + + W L +A Sbjct: 185 EEEIMNVTVKTLPSYHVAYVRNVGPYGPEGSVGEAWQRLVRWASARDLWT-PDRICLSIA 243 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 D+P T P R D + + V+ ++ GG+YA VG+ I + Sbjct: 244 HDNPKVTEPAKCRLDAAIVIPQDFKA-DGDVNVTDIAGGKYAAGAWVGDARAIGSAWDQL 302 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG++ P Y ++ +P+ Sbjct: 303 FGKWLPESGDQPDHRPCFELYRGEFHDPKTHNFRCELCLPV 343 >UniRef50_A0NYM4 Transcriptional regulator, AraC type; possible DNA gyrase inhibitor n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYM4_9RHOB Length = 299 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 2/153 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 DV I PS +A+LPHR + + + K + + + DP A Sbjct: 145 DVAIKTLPSETLAVLPHRGAYMEIGKAFEKLFGILVSRQVIGQ-IGAMKALYYSDPTHVA 203 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + + + + P + E GG YAV R+ G D+ + WL S Sbjct: 204 EDDLQSAAGAVIGDGFP-VEAPLETRETRGGDYAVLRYKGPYADMKWAYEWLYGEWLTQS 262 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + AP L Y N L TD+ +PL Sbjct: 263 GREPDDAPCLEVYLNNPRDTAPADLLTDICLPL 295 >UniRef50_B5WD53 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B5WD53_9BURK Length = 416 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 10/163 (6%) Query: 4 LTL--DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 +T+ +V I + + + H S + + W + L Q + GV +DD Sbjct: 113 MTMIREVVIRYVEPMEILSVDHVGSYMQIGKAFDALFGWLAKHNLL-AGQMRMIGVYFDD 171 Query: 62 PATTAPEAFRFDICGSVSEPIPDN-------RYGVSNGELTGGRYAVARHVGELDDISHT 114 P +A R + P+ VS + GG YAV RHVG D+ Sbjct: 172 PGVVEEQALRSKAGVLLPGPVMTEVAAGVGMGGAVSVTRIRGGEYAVLRHVGPYSDMRAA 231 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + WL SG + AP+ Y N + L T++ + Sbjct: 232 YDWLYGTWLVQSGREAADAPVFEEYLNSPKETAPAELVTEICL 274 >UniRef50_A9KFE4 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=A9KFE4_COXBN Length = 284 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQ-SQTFGVAWDDP 62 +T+++ I + + +A++ H PE + S+ K I W K ++ + + FG A+DDP Sbjct: 126 MTMNIVIKNMQARRLAVVEHHGHPEKVGESINKLINWAKSQAMNLKPKAGEAFGFAYDDP 185 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TT PEAF+FD+ +V E + V L GRYAVA H G D+I T++G+ R W Sbjct: 186 KTTEPEAFQFDLGITVPEQLK-LEGNVIEKRLPAGRYAVAMHEGSRDNIDDTIYGLYRDW 244 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 LP SGE++ P +F Y N V E L T+ +V Sbjct: 245 LPNSGEELGDLPCIFCYYNFDHEVAETELRTECWV 279 >UniRef50_B6R2M9 Transcriptional regulator, AraC family n=3 Tax=Rhodobacteraceae RepID=B6R2M9_9RHOB Length = 283 Score = 155 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 3/159 (1%) Query: 2 TNLTLD-VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + ++ V I + P + L HR S + +K G+ G+ +D Sbjct: 126 SIFSMHPVEIKEVPERSLQALFHRGSYFEMGVVFSKLAAMLSSRGVIRK-CGPIVGIYYD 184 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP+ + R + V + N G+ + GGR AV +H G + + Sbjct: 185 DPSLVPLDELRSHVGAVVPQNF-ANTEGLEPLVIPGGRCAVLKHKGPYAGLRGAFHYLYG 243 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE+ P + N + L ++++PL Sbjct: 244 VWLPTSGEEAADQPCYEVFLNSPTNTAPEDLLVEIFLPL 282 >UniRef50_A9D6E7 Putative AraC family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6E7_9RHIZ Length = 283 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 2/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++ DV I + + H + + KF L+ + + D Sbjct: 127 SDTMYDVRIEEMGPAKLVGFEHTGPYTEIGSAFEKFYAEVGPANLASQAMAIAAA-YFSD 185 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P TAPE R VS P D G ++ GRYAV +H G ++ Sbjct: 186 PDITAPEECRSLAGMIVS-PGLDVAGGFDRFDILAGRYAVLQHKGAYAELPKAYQWFYGA 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WL SGE AP + Y N L T++ +PLA Sbjct: 245 WLADSGESAAAAPAVEKYLNSPMNTAPAELVTEICMPLA 283 >UniRef50_A6FZ48 Probable AraC-family transcriptional regulator n=2 Tax=Proteobacteria RepID=A6FZ48_9DELT Length = 300 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 69/163 (42%), Positives = 93/163 (57%), Gaps = 5/163 (3%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 M++ + + IPVA L HR P L SV +FI WR+ + +P ++T GV +D Sbjct: 138 MSDAATPI-LRTLDPIPVAALEHRGPPATLMASVQRFIAWRRGSQAAPEPSTRTLGVLYD 196 Query: 61 DPATTAPEAFRFDICGSVSEPIPDN----RYGVSNGELTGGRYAVARHVGELDDISHTVW 116 DP + APE FRFD+C ++ + + GV + GGRYAVARH G D I TV Sbjct: 197 DPESVAPEDFRFDVCAELARSLDGDARAREAGVVAKTIAGGRYAVARHRGSTDAIGETVM 256 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G+ R WLP SGE++R AP++FHY V E TDVY+PL Sbjct: 257 GLYRDWLPGSGERVRDAPLVFHYIERVPRVAEHEQVTDVYLPL 299 >UniRef50_Q2KTK1 AraC-family transcriptional regulator n=6 Tax=Burkholderiales RepID=Q2KTK1_BORA1 Length = 279 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 5/160 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVN--QSQTFGVAW 59 ++ VN++ +P + +A LPH+ + + S + + GL + GV + Sbjct: 121 ESVMYSVNLVSYPGLTLAALPHQGDYQRIGESFDRLALLAVNQGLIAPHAESGPWIGVYY 180 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 DDP R C + + + R V ++G +I H + Sbjct: 181 DDPRQVETGRLRSHACVASKG---APGDPLQTLVIPAMRCGVVEYLGPYTEIDHAYDWMF 237 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLPASGE+ P+ Y N + L T +Y+PL Sbjct: 238 SEWLPASGEEPLDFPMFEEYANDPKTTPAAALLTRIYLPL 277 >UniRef50_Q21DM1 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21DM1_SACD2 Length = 287 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 2/153 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V+I F + + L H+ + K + S++FG+ +DDP + Sbjct: 136 VDIEKFNKVELGGLAHQGDYLDIGAVFEKVFVSAGSKQFLN-EHSRSFGIYYDDPTSKDK 194 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 A R C +++ P G+ L G +AV G ++ WLP SG Sbjct: 195 SALRSHACVTLN-PQQVKEAGLDYLTLEAGNHAVLTFTGPYSELEQAYEWFYGEWLPQSG 253 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ++ P Y N + V L T +Y+PLA Sbjct: 254 YQLADRPPFEEYLNDPKTVPPSELLTKIYLPLA 286 >UniRef50_Q2BPM6 AraC-family transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2BPM6_9GAMM Length = 292 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 2/153 (1%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +V +++F + + H+ + + K M+ L ++++ G+ ++DP Sbjct: 136 TMFNVEMMEFETTNLLGYEHKGDYMEIGNAFDKLFMFAGSKRLIG-PETRSIGIYYNDPG 194 Query: 64 TTAPEAFRFDICGSVSEPIPDNRY-GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + R C SV P N ++ GR A G ++ W Sbjct: 195 SVDASELRSHACISVEAPRDAEEEQDPENLQIPAGRCATLLFKGPYAELEKPYNWFFGQW 254 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDV 155 LP SG + P Y N L T + Sbjct: 255 LPQSGLEAADFPPFEEYLNDPRTTAPSELLTRI 287 >UniRef50_Q81BV9 Transcriptional regulator, AraC family n=72 Tax=Firmicutes RepID=Q81BV9_BACCR Length = 296 Score = 151 bits (381), Expect = 8e-36, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 4/157 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELL----NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +V I+ +I VA + H + E L + K + + ++ + D Sbjct: 137 NVEIVTADNINVAYIRHIGTYEELTIAFPKMIEKLFHYAAKQNYHVFEDTKVLTIYHDHH 196 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T R +C ++S+ V + G+YAV D+ I W Sbjct: 197 EFTEDYHLRTSLCVTISDESTVETNDVGIMVIPSGKYAVGHFEICQDEYKGAWDFIYGEW 256 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG K R + Y N + + + D+YVP+ Sbjct: 257 LPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPI 293 >UniRef50_Q8A6I0 Transcriptional regulator, AraC-type n=21 Tax=Bacteroidales RepID=Q8A6I0_BACTN Length = 285 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 4/159 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 +L L I P+ V + + + + + KE L P+ + D Sbjct: 128 DLELKSEIKSIPARNVIYIRLSGDYKLNDYGGTWGRLWQFIKEQKL-PMGDFSPLCIYHD 186 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP T E R D+C + + V L GRYA+ + G D++ I Sbjct: 187 DPKVTPAEKLRTDVCMVMPVQVAPKGD-VGFKTLPAGRYAIFLYKGTYDNLQAVYDTIYG 245 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP +R P Y N + L T++Y+P+ Sbjct: 246 KCLPEMECTLRDEPSAERYLNNPCETAPEELLTEIYIPV 284 >UniRef50_A8UPH5 Transcriptional regulator, AraC-type n=3 Tax=Flavobacteriales RepID=A8UPH5_9FLAO Length = 287 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 4/155 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELL--NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 I+D + + L + K K L + G+ +DDP Sbjct: 134 KPKIVDLEDQKCLYYTMHGAYQTLDYGSAWEKLWGEVKAQKLFTKGI-KHIGLPYDDPKI 192 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T + R+D C + + N V EL GG++AV + G + + WL Sbjct: 193 TEADKIRYDACLIIHKDAKPNGD-VGVKELKGGKFAVFLYQGSYKHFADVYDHMFNAWLI 251 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG ++R AP Y + A V+E++L+T+ Y+P+ Sbjct: 252 NSGHELRDAPSREKYISDARRVSEEKLKTEFYIPI 286 >UniRef50_B3QF69 Transcriptional regulator, AraC family n=3 Tax=Rhodopseudomonas palustris RepID=B3QF69_RHOPT Length = 286 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 55/153 (35%), Gaps = 2/153 (1%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + I F +IP + H + + G P + + V DDP Sbjct: 128 SIEIQRFDAIPAFAIRHDGPYIEIGKAFGMLFGQLAARGALP-ERIEMIAVYLDDPTAVP 186 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E R + D V E+ GG YAV RH G D+S + WLP S Sbjct: 187 LERLRSFAALAAPGG-KDLDPPVERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQS 245 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P++ Y N + L TD+ +PL Sbjct: 246 DREADDRPVVEKYLNSPQDTKPSDLLTDLCLPL 278 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 21/79 (26%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V I+ A+L H+ ++ + + + P T P Sbjct: 208 VERIEIAGGDYAVLRHKGPYADMSAAYNWLFGTWLPQSDREADDRPVVEKYLNSPQDTKP 267 Query: 68 EAFRFDICGSVSEPIPDNR 86 D+C + P Sbjct: 268 SDLLTDLCLPLRSIAPSPD 286 >UniRef50_Q7M9P2 BH0401 PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7M9P2_WOLSU Length = 292 Score = 148 bits (373), Expect = 7e-35, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 3/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + L L+ I P+ L H+ + + S K + W E +S +Q++ G+ D+ Sbjct: 135 SFLGLEPTIKKIPAFRAVYLRHKGYNKSIALSWQKLMAWGFEHQIS--SQARQIGIHHDN 192 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P+ T R+ V E + E AV G D+ + + Sbjct: 193 PSITPLAECRYIAALEVEEGFRAQGL-LGVMEFPPTLCAVFEVQGRYGDVLGLIDYVYHE 251 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP SG + + P Y + D +P+ Sbjct: 252 WLPQSGYEAKTIPAFALYQKNHFLDPLGNFQLDFCLPVG 290 >UniRef50_Q7NYH2 Probable bacterial regulatory helix-turn-helix proteins, araC family n=1 Tax=Chromobacterium violaceum RepID=Q7NYH2_CHRVO Length = 284 Score = 148 bits (373), Expect = 7e-35, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 3/148 (2%) Query: 5 TL-DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 T+ V I++ ++ V M HR + + + S++FG+ DD A Sbjct: 128 TMRQVEIVERDAVKVLMRHHRGPYMEIGKAFDALRAVQGPQQGVGAP-SRSFGLYLDDQA 186 Query: 64 TTAPEAFRFDICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T R C +V + G G + GRYA H G ++ + RHW Sbjct: 187 QTPAADCRSIACATVPAFMEGKAMDGFEWGSIPAGRYAAVLHTGPYSELGECWDWLYRHW 246 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQR 150 LPASGE P + Y N Sbjct: 247 LPASGEMPGDTPCVEEYLNAPYDTPPAE 274 >UniRef50_A9HPW1 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HPW1_9RHOB Length = 273 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 58/155 (37%), Gaps = 3/155 (1%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 DV+I +A L HR + + K P + GV +D+P Sbjct: 120 VFDVDIQTTSDKRLAALSHRGDYAEGSVAYQKVATIISTGNHWPQTRG-MAGVYYDNPEV 178 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T E R G+ +LTGGRYAV G ++ + WL Sbjct: 179 TPTEDLRSHAGVLWEGG--AIPDGLEEVQLTGGRYAVLHFKGPYAGLAEAYRYVYGPWLS 236 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +S E +R AP HY N L TD+Y+PL Sbjct: 237 SSQESLRDAPSFEHYLNDPTNTAPADLLTDIYMPL 271 >UniRef50_C8NA30 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA30_9GAMM Length = 280 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 2/158 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T T V I D ++PV LPH + S ++ G P Q++ FG+ +DD Sbjct: 124 TTATYPVKIRDIAALPVVALPHHGDYMSIGASFSQLETLLTLRGHLPAPQARYFGIYYDD 183 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 PA R +V+ D + L GRYAV H G ++ + R Sbjct: 184 PAGCPTAQLRAAA--AVALGGADATPPLQTLTLAAGRYAVLEHRGAYAELHRAYDWLYRD 241 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL S ++ AP L Y N + V Q L T++Y+PL Sbjct: 242 WLLNSPYQLADAPCLEEYLNDWQQVPPQELRTNIYLPL 279 >UniRef50_C9YDH7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDH7_9BURK Length = 319 Score = 145 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 6/161 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPE-LLNYSV-AKFIMWRKETGLSPVNQSQTFGVAW 59 + ++ V + P++ VA + H +N F+ W GL P S FG Sbjct: 159 SFSSMQVTLTTLPAVRVAYMRHVGPYGVSVNQFWTGTFLPWCFAQGLLPGASS--FGRGL 216 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 DDP TAPE R+D V + R S L GGRYA+A G + ++ ++ Sbjct: 217 DDPHITAPEHCRYDAMVQVPDDFVA-RSPASMATLPGGRYAIAPFEGTVPQLTVAWTELL 275 Query: 120 RHWLPASGEKMRKAPILFHYTNLAE-GVTEQRLETDVYVPL 159 R WLPASG K+ P+ H A ++ ++ +P+ Sbjct: 276 RDWLPASGMKLDGRPLFEHMPPDARYDAATGVMQCELCIPV 316 >UniRef50_A3VBK3 Transcriptional regulator, AraC family protein n=2 Tax=Rhodobacterales RepID=A3VBK3_9RHOB Length = 278 Score = 145 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 2/158 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 DV I D P+ + ++ HR + + K GL P + G+ +DD Sbjct: 122 ETQMYDVKIEDQPARRLGVIDHRGPYIQIGEAFEKAGSTVMARGLGP-HLGAMLGIYFDD 180 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P A E R + E + L GG++A+ H G ++ + Sbjct: 181 PENGAAEDLRSAAGFEMDEAAEITP-PLREVRLEGGKHAILTHTGPYTGLAQAYKYLFGE 239 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL +GE R+AP Y N L T + VPL Sbjct: 240 WLATAGEMPREAPPFELYVNTPMNTAPDDLVTLIGVPL 277 >UniRef50_A6GKR6 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKR6_9DELT Length = 306 Score = 145 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 6/155 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPEL----LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +N+ D P +A L H ++ W GL S+ + D+P Sbjct: 149 SINVEDHPQKQLAYLRHVGPYAGDSALFEGLWGRYCAWAGPRGLLGAPNSEMVCIYHDNP 208 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R + +V+ P + ++ + G+Y AR D + ++ W Sbjct: 209 EITEDDKLRISLGVTVA-PGTETSGEINLLTIPAGKYVCARFELTSKDYAGAWNTLMG-W 266 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 LP SG + P+ Y + E + ++ + Sbjct: 267 LPNSGYQPDDRPVYETYLSDPSEDPEGKHLVEIRM 301 >UniRef50_B1KWH9 Transcriptional regulator, AraC family n=2 Tax=Firmicutes RepID=B1KWH9_CLOBM Length = 302 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 4/157 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 DV II S+PV + + + L+ S+ K + + L +S+ V P Sbjct: 142 DVKIITMDSLPVIYIRKIGAYKDLDNYLDSMEKLFTFAIKQNLIDEKKSKPLAVYHSHPD 201 Query: 64 TTAPEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + E R IC S+ EPI D + + ++ G YAVA + + W Sbjct: 202 FSDEEKQRTSICLSIKEPITVDGKSDIGYMSISSGTYAVAHFEILQSEYGDAWDFLYGEW 261 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG R Y N +E + D+Y+P+ Sbjct: 262 LPRSGYLPRNYFPFEVYVNNPNEHSENKHIVDIYLPI 298 >UniRef50_A6GAG6 Transcriptional regulator, AraC type n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GAG6_9DELT Length = 279 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 3/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + D P++ L H S + + + + G P + + G+A+DDP TA Sbjct: 122 VELRDDPALTCIGLRHTGSYSECGQTWGELMAHAAKAGWMP-HVLGSVGLAYDDPDITAA 180 Query: 68 EAFRFDICG--SVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E R+D C + R EL GRYA+ H G+ + I T G+I LP Sbjct: 181 ERLRYDACMVMEPARARALCRPPFVLRELPAGRYAITLHRGDFESILETYVGLIGRALPF 240 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 G ++ P++ Y + V L T++ V Sbjct: 241 RGVELANEPVIERYLDDPATVPLHELRTEICV 272 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 + + P+ A+ HR E + + I + DDPAT Sbjct: 206 LRELPAGRYAITLHRGDFESILETYVGLIGRALPFRGVELANEPVIERYLDDPATVPLHE 265 Query: 70 FRFDICGSVS 79 R +IC + Sbjct: 266 LRTEICVRIE 275 >UniRef50_A1ZL96 Transcriptional regulator, AraC-type n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZL96_9SPHI Length = 290 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 4/154 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 IID P+ + E + + K + + L + FG++ D P Sbjct: 137 PKIIDLPAQQLLSTRILGKYETSVIQKAWQKLMTYVFAQQLF-YPTMEMFGISHDHPEIA 195 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 ++++ C ++++P+ + L G+YA+ + G + +++ WL Sbjct: 196 GDILYQYEACVTLAKPV-ASEGEFVVKTLPAGKYAMFTYQGSYAQLDTVYNLVLKQWLFN 254 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S +R+API Y N + E+ L T +++P+ Sbjct: 255 SSYSLREAPIFDQYLNTPDNTPEEELLTKIFLPI 288 >UniRef50_B6B1U3 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B1U3_9RHOB Length = 272 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 V + D P +A + H + ++ S K L + G+ +DDP Sbjct: 112 EDMYGVKVEDAPERRLAAMAHVGAYNGVSKSYEKVAAVFTIRDLW-KHARGMVGIYYDDP 170 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 +T R +++ + + + G AV G + + W Sbjct: 171 STVPEAELRSYAAVELADDVV-VPDPLEEVLIRGDESAVLVMKGAYTGLQEAYEWLYGQW 229 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG P Y N L T +YVPL Sbjct: 230 LPQSGLMPADQPSYEIYLNSPMDTAPADLLTQIYVPL 266 >UniRef50_Q6ALR9 Related to DNA gyrase inhibitory protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR9_DESPS Length = 155 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 6/156 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ I + P VA + + E + A+ + W + G + G+ WD+P Sbjct: 1 MNAKIKEMPEYNVAYVRKMGAYGEETCKQAFAELVQWAEPKGYLRLGT--ILGLYWDNPE 58 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 TT PE R D C +V + + ++GG+YAV + W Sbjct: 59 TTPPEKCRTDACITVPDGTLA-EGTIGVQLISGGQYAVCHFEITAEGFQQAWKDAFS-WF 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G + P + N E + R D+ +PL Sbjct: 117 IGKGYECAAKPCYELFHNNGEEDPDGRWIFDICIPL 152 >UniRef50_C6IS69 Transcriptional regulator n=11 Tax=Bacteroides RepID=C6IS69_9BACE Length = 315 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + + + + P + H + + + + K I W + GL N +++ V DDP Sbjct: 158 FMETKIEVKEMPDMKAVYCRHMGAFKEIVKAYEKLIKWAEPRGLYIPNVTKSATVTHDDP 217 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + T R C V + + N + GG+YAV +D + + W Sbjct: 218 SVTELSKVRQSACIIVEGDVK-GEGEIGNLVIPGGKYAVGHFELGTEDFEKAWNTMCK-W 275 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + Y N E + D+ +P+ Sbjct: 276 FTESGYQQGDGCTYELYHNSHRTHPENKHIVDICIPI 312 >UniRef50_A4ERY7 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4ERY7_9RHOB Length = 232 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 1/158 (0%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T DV I + +IPVA++ HR P + ++ +FI+WRK GLSP+N S+TF V D Sbjct: 75 TFKADDVTIRETETIPVAIIEHRGPPAGIGATIQRFILWRKAKGLSPLN-SETFNVFHSD 133 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P +T P +R DIC + I ++ GV +G + GGR AV R VG DD+ + R Sbjct: 134 PQSTDPREYRLDICVATDRGIDEDEQGVVSGVIPGGRCAVLRVVGNSDDLETASLYLYRD 193 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SGE+ R P+ V+EQ +++PL Sbjct: 194 WLPESGEETRDFPLYCQRIAFFPEVSEQEAVAGLFLPL 231 >UniRef50_B9KLE9 Transcriptional regulator, AraC family n=4 Tax=Rhodobacter sphaeroides RepID=B9KLE9_RHOSK Length = 156 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 2/155 (1%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 V+I + +A L H + E + + + +E L GV WD+P Sbjct: 3 MFPVHIRETSPRRLAALRHTGAFEEIGATFGQICQILEERSLLSQAGC-MIGVYWDNPLL 61 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 P A V E + + L GGR+AV ++ G ++ WLP Sbjct: 62 APPGALHSHAGIDVPEGMEIAP-PLEELRLAGGRHAVLQYTGPYSGLARAYRYFFSQWLP 120 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + E + P++ Y N A +L T++ VPL Sbjct: 121 EAREIQAEGPLIEIYRNAAMETPSDQLVTEICVPL 155 >UniRef50_D1B3I6 Transcription activator effector binding protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3I6_SULD5 Length = 287 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 2/159 (1%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + +L V I PS VA + H+ + + K W G+ + + + + Sbjct: 127 SEKSLHVKIQTMPSFDVAYVRHKGYDRTIQQAWLKLQAWALGHGV-DFSDQRMIALHHSN 185 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYG-VSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P + C + + R G + + AV G D+ + I Sbjct: 186 PRFVESSQCHYVACLELPKGREFYRSGDIGVMRIPQTFCAVFSLKGVYGDLKKYMDVIYH 245 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W P S + P Y ++R + D VP+ Sbjct: 246 EWFPQSAYEKIALPSFAIYRENHFINADERFDLDFCVPV 284 >UniRef50_Q17ZT7 AraC-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q17ZT7_CLOD6 Length = 306 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 5/158 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSP----ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ I++ ++ + S + + + E L + +Q + D+P Sbjct: 146 EIEILELDNMNTIYTRYTGSYGNLTSTFPKLLERLFTYASEQNLLGLENTQILAIYHDNP 205 Query: 63 ATTAPEAFRFDICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R IC ++ + I + N + G+Y V + S + Sbjct: 206 QFTQEHQLRTSICMTIPDNIVVKENDNLGNMIIPSGKYLVGHFDISKSEYSDAWDFMYNE 265 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WL K+R + Y N + R D+Y+P+ Sbjct: 266 WLSNGNYKLRASFPFEVYLNNPHNHPQNRHLVDIYLPI 303 >UniRef50_A1ZNF5 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNF5_9SPHI Length = 469 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 2/157 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + + I + I +A + H + + + W + + + + + D+P Sbjct: 144 EMNAQIVITELQEIKLAGVMHIGEFDKAGNMFQRLMEWGAKKRVLATSDFKAITIYHDNP 203 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T RF C ++SE I + L G YAV + D+I + W Sbjct: 204 NVTQTSKLRFSTCITISEDINA-DGEIRPINLKKGIYAVGHFEIKADEIPTAWKNMC-IW 261 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + +G + R Y N + +Q+ D+ +PL Sbjct: 262 VIENGYEFRDGDYFEMYHNDHKTHPDQKFILDICIPL 298 >UniRef50_A1VFK9 Transcription activator, effector binding n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK9_DESVV Length = 156 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELL-NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++V I D P + VA + + + W + + GV D P Sbjct: 1 MNVRIEDMPDLRVACIHAPGPYATAAPQAWQELSAWMGHNQMLTFE-TLFVGVLGDTPCG 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A E+ +D SV + I + Y VS + GG A H G ++ + WLP Sbjct: 60 LASESTGYDAGVSVPQHIEADGY-VSVRIIAGGPCATIVHKGPHKTLAEVWASLYWEWLP 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ASG R+AP + Y N + + L T +++PL+ Sbjct: 119 ASGRITREAPCVEVYLNAPDSTPDHELLTRLHLPLS 154 >UniRef50_A1ZSG3 Transcriptional regulator, AraC type, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZSG3_9SPHI Length = 292 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 4/156 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +I P + L H + +N + + + L + G DD Sbjct: 134 YSIESLPPTRILYLTHYGNYNSQGINDCWDALLEYAYQQKLL-KEDTHYLGELMDDDEIV 192 Query: 66 APEAFRFDICGSVSEPIPDNRYGV-SNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 E R++ ++ + G + + G+Y H G+ + + I HW+ Sbjct: 193 KDENCRYNAAITLPQEAVFEPTGFFNTKTIESGQYVCVTHQGDRNKLDTVYEQIFLHWIV 252 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + ++ P L Y N + L T++YVP+A Sbjct: 253 KNEFEIVDKPFLEFYLNDETDTATKDLLTEIYVPVA 288 >UniRef50_A6EIJ9 Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIJ9_9SPHI Length = 309 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 3/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V I P + +A + H ++ K + W + GL + D TA Sbjct: 157 VEIKTLPQLELAYISHIGDQGQ-AHTFQKLMEWAGQAGLLRTPDFTLLKIYHDSFRITAS 215 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 E R C + EP+ V + G+ VAR +D+ + WL +G Sbjct: 216 EQVRMSACIVLKEPVST-DGLVGTMTMPSGKCVVARMELAMDEFGKAWTELF-VWLNRNG 273 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 K + Y N + D+ +P+ Sbjct: 274 YKTTERNCFEIYGNDPSTHPQHHFIVDLCIPI 305 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%) Query: 12 DFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR 71 PS + + + + + +W G ++ F + +DP+T F Sbjct: 240 TMPSGKCVVARMELAMDEFGKAWTELFVWLNRNGYKTTERN-CFEIYGNDPSTHPQHHFI 298 Query: 72 FDICGSVSEP 81 D+C + Sbjct: 299 VDLCIPIDGH 308 >UniRef50_A3Y825 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y825_9GAMM Length = 289 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 N +V +I+F ++ +A L H+ P L+ S+ FI WR+ L P ++S+TF + + DP Sbjct: 128 NTCFNVELIEFHTLSIAYLTHKGHPNQLHRSIQTFIDWRRARAL-PPHKSRTFNLLYHDP 186 Query: 63 ATTAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 PE +RFDI D ++ ++ GRYA R+ G+ D + ++ + Sbjct: 187 KRVEPEDYRFDIACEFKASALSKLDRDANIAMLDIPQGRYAKIRYQGDDDQLDQAIYYLF 246 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 WL SGEK+R P+ + V + +D+Y+ Sbjct: 247 NLWLEQSGEKLRDFPLFIERVSFFPDVAANKAISDIYL 284 >UniRef50_Q64RP2 AraC-type transcriptional regulator n=6 Tax=Bacteroidales RepID=Q64RP2_BACFR Length = 280 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 8/158 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 +L I+ P + + + + K + + GL ++ G+++DD Sbjct: 127 SLKPEILTEPELKLVYIRIIGRYGEEEPYIEAWRKLRDFLQINGLLT-PSTRWIGISFDD 185 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P T E RF C +V + + GRYAV G + I H Sbjct: 186 PTVTKTEQCRFYACATVEHDVSPQGA-FGMKTIPQGRYAVYTLRGSYSGLQEMYDRIYSH 244 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP + R A Y N E+ T +Y+P+ Sbjct: 245 PLPTA---FRDATSFEEYLNCEPDTEEKDYVTRIYIPI 279 >UniRef50_Q15WE0 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=Q15WE0_PSEA6 Length = 350 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 1/153 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + +IDFP +A L H PE + +VA+FI WRK+ G SP S+T+ + ++DP Sbjct: 198 QIQVIDFPRTAIAFLTHEGDPEGVMKTVAQFIQWRKQYGPSPR-TSKTYNILYNDPRDVP 256 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E +RFD+ S+ + + N Y V G + GR A RH G +S ++ + + Sbjct: 257 KEEYRFDVAASIRKVVEPNDYAVQQGVIGSGRCAHFRHNGSDRLLSESIDELYKTISLNE 316 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++R AP+ V E D+Y+P+ Sbjct: 317 DYEIRNAPLFVERVQGFPDVPENETIIDIYLPI 349 >UniRef50_A3YG43 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YG43_9GAMM Length = 327 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 7/156 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +DV + + V L E + + + I + + G+ NQ + F +D+P Sbjct: 170 MDVKVKNLSEQKVIKLASVGGYEESAIYQTWGQLIDFAQTRGIEESNQQR-FAFCYDNPV 228 Query: 64 TTAPEAFRFDICGSVSEPIPD--NRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R++ + E + G+YAV + G + H Sbjct: 229 LTPLNKCRYEAAIIMPEAAQSTRVNAPYFIASIPAGQYAVHYYKGPGAEAIQAHLHFYSH 288 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 WLP SG + P++ HY N A ++Y+ Sbjct: 289 WLPQSGYEPDHFPVIEHYLNDARVDGFVE--MEIYI 322 >UniRef50_Q5LFV9 Possible AraC family transcriptional regulator n=8 Tax=Bacteroides RepID=Q5LFV9_BACFN Length = 382 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 11/159 (6%) Query: 7 DVNIIDFPSIPVAML------PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 D +I VA L ++ + L + I + K+ L+ + ++ D Sbjct: 222 DCSIKRIKEFKVAYLKFERTHRNKQAYSTL---WGQIIEFAKKYNLTDKG-FKYVSISLD 277 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 T + RF I +V + G + G Y+V G +++ + Sbjct: 278 SLDITEIDKCRFLIGITVPYSME-VPKGFGTLNIQAGLYSVFNIKGGYHELNKIYRNVYL 336 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S ++R+ Y N + L T++Y+P+ Sbjct: 337 DWLPNSKYRLREQMTFEIYANTPNKTSTDELVTEIYLPI 375 >UniRef50_C5BIU8 Transcriptional regulator, AraC family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BIU8_TERTT Length = 313 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 4/154 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 I + PS +A + H + ++ K +WR E GL Q F + +P Sbjct: 163 QPVICEVPSRLMAYIRHHGYDRSIAHTWQKLDLWRFENGLHTQGQ---FALLHSNPCLVP 219 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + R+ C + + P R ++ L GG +A G + + I++ W+P S Sbjct: 220 LKDCRYVACVEIHK-TPLQRSVINVLRLPGGIHARFHLAGVYGEFIPYLSRILQEWVPHS 278 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G ++R PI Y ++ + ++Y+P+ Sbjct: 279 GLRVRTTPIWVAYNKNQFTDSQHEFDLELYIPIG 312 >UniRef50_B6R4C2 Transcription activator, effector binding n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R4C2_9RHOB Length = 296 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 9/162 (5%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPEL----LNYSVAKFIMWRKETGLSPVNQSQTFGV 57 + + V + VA + + + + + W GL + ++ + Sbjct: 136 SLVADKVEVGKLEPRTVAYVRRTGNFQERPEIFGEAFGTLMAWAGPRGL--AHGAEMMCL 193 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 DDP T E RF C ++ P D V + GGRYA V D Sbjct: 194 FHDDPQVTDAELMRFSSCLTLRGP-ADVEGEVGKMMVGGGRYACGHFVITHDQSQAAWEY 252 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + WLP SG + P Y ++ + + + +P+ Sbjct: 253 MFGDWLPLSGYEPENIPCFQLYPSMTGEMGPHEVV--ICIPV 292 >UniRef50_C7M7E1 Transcriptional regulator, AraC family n=2 Tax=Bacteroidetes RepID=C7M7E1_CAPOD Length = 289 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 5/154 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 I++ + + LN + + K L ++ V++DDP T Sbjct: 132 PKIVELEPKSLIYVALTGEYGTLNYNKAYEQLWGVVKSQKLFTKGI-ESICVSYDDPKIT 190 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R ++ ++ +P + VS L GG+YAV + G +S +R W+ Sbjct: 191 EASLQRSEVSLAIHKPAKPSGE-VSCKTLAGGKYAVFFYQGSYTQLSSVYDAAMR-WVVD 248 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S ++R P+ Y N E +L+T++Y+P+ Sbjct: 249 SEYEVRDEPMFEKYLNDCRRTPEGKLKTEIYIPV 282 >UniRef50_Q7MF47 AraC-type DNA-binding domain-containing protein n=22 Tax=Gammaproteobacteria RepID=Q7MF47_VIBVY Length = 294 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 4/154 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + I + P A + H + + W G S Q FG+ +PA Sbjct: 143 EPKITEVPERMAAYVRHVGYNRSIKNAWLILKAWANSEGRSFEVQ---FGLHHSNPAWVE 199 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + R+ C ++ +P+ R V+ + GG +AV R G ++ + ++ WLPAS Sbjct: 200 LDKCRYVACIAIDKPLK-YRGVVNQMVIPGGLHAVFRLHGVYGELLPQISMVLEKWLPAS 258 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G K+R P HY + + E D Y+P++ Sbjct: 259 GFKLRSTPAYVHYHSNHFVNESEAFELDFYLPIS 292 >UniRef50_B0RPV2 Transcriptional regulator, AraC family n=4 Tax=Xanthomonas RepID=B0RPV2_XANCB Length = 319 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 L V + + V +L R + + L+ + W + G+ + GV D Sbjct: 164 LQVTVQWLEPLEVVVLRQRGAFDDLDRGFGRIAAWAERAGVI-EHLHALIGVPLSDHRDV 222 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + F+ + + + + L G +AV RH G + + ++ WLP Sbjct: 223 PAQQHLFECGIAFATAV-APPAPLHVRVLGEGAHAVLRHTGSYAGLEDALDRLLADWLPG 281 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG +R AP+ + Y + E V E L D+ VP+ Sbjct: 282 SGHALRDAPLHYLYLDDPETVAEADLRADIRVPV 315 >UniRef50_C5BHP3 Bacterial transcription activator, effector binding domain protein; putative n=2 Tax=Edwardsiella RepID=C5BHP3_EDWI9 Length = 155 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 10/158 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL-LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + V I+ + P+ +L + L + + W GL + Q + +D+P Sbjct: 1 MQVRIVSLAAQPLFVLRVQGPFAQSLGPGFERLMAWSARHGL----RGQWMALYYDNPRE 56 Query: 65 TAPEAFRFDICGS---VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 AP+A R D+ + V+ P YG+ G L GG YA+A+ +D + + Sbjct: 57 VAPDALRADVALTTASVTLPSDGEAYGIRRGALAGGLYALAQVRVTDNDFATPWIALFDQ 116 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LPA G + P Y + G ++ VP+ Sbjct: 117 ALPACGYRPDGGPCFERYLSDGRGS--GEWLLELGVPV 152 >UniRef50_A7GQI7 Transcription activator effector binding n=6 Tax=Bacillus RepID=A7GQI7_BACCN Length = 152 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ I + P +A + N ++ K W E + G++ D+P Sbjct: 1 MNSKIENLPKYRIAYVRQVGPYGFGNVQTMEKLKNWAAEKKHLD-ETAIVLGISHDNPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T PE+ R+D C + + V+ EL GG+YA+ + I I + L Sbjct: 60 TPPESCRYDACIVIEKN-EPIDDFVAESELPGGKYAIYEVEHTAEAIQKAWIEIFSNLL- 117 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S ++ P+ Y ++ VP+ Sbjct: 118 NSDYEIDTRPVFERYMKKMVD----NHLCEICVPI 148 >UniRef50_D1SVQ4 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SVQ4_9BURK Length = 288 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 5/152 (3%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V +I+ P+ V L HR + ++ + W + + + G+ +D Sbjct: 135 VRLIEQPAQQVLALRHRGPAATIPHTHRRLR-WL----IGELPGTVWLGMCREDAGDPGS 189 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + ++ G YA R G I+ + WLPASG Sbjct: 190 GLCYHAAAALAETLAHAMHPDIERIDIPAGLYACHRLAGPYTRINAAFNALYARWLPASG 249 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P L HY N L TD+ VP+ Sbjct: 250 YEPDDRPALEHYLNSPRNAAPAELRTDLLVPV 281 >UniRef50_C3R0V3 Transcriptional regulator n=4 Tax=Bacteroides RepID=C3R0V3_9BACE Length = 297 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 12/161 (7%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLN------YSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 I++ +IPV L + + + + Y+ + KE L P + +G+A+DD Sbjct: 138 YRIVESETIPVLFLSYIGNYDTCSTVAFETYTWDCLYEYAKENSLLPDKED-YWGIAYDD 196 Query: 62 PATTAPEAFRFDICGSVSEPI---PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 T+ E RF C ++ + I P + + +L G YAV H G+ + I Sbjct: 197 TDITSLEKCRFYACIAIQKGIGTNPPLTSPIKHMDLPQGTYAVYVHQGDYALLDAFYETI 256 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ LP + + PIL HY N + L T+V++P+ Sbjct: 257 LKQ-LPQF-YSLGETPILEHYLNSPTDTDVKELLTEVWIPI 295 >UniRef50_C6IFE4 AraC family transcription regulator n=9 Tax=Bacteroides RepID=C6IFE4_9BACE Length = 377 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 5/159 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNY---SVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + I I + + + + K + ++ P + ++ D Sbjct: 218 TNIKPEIKVISPIKIFCIEVGEAYKNKLKYRLLWNKLLHHAEQYEADPRYD-KFISLSMD 276 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 DP+ T E RF + ++ + ++ GGRYAV RH G + I Sbjct: 277 DPSITPTEKCRFYLGITLRDDTKARPVP-GIMQIPGGRYAVFRHTGSYSSLHKVYRSIYE 335 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W P S + Y N L T++Y+P+ Sbjct: 336 EWFPKSKYHPQSTFSFEMYMNHPSTTETSELLTEIYIPV 374 >UniRef50_UPI00019685E3 hypothetical protein BACCELL_00469 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685E3 Length = 329 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGV 57 ++++ D+ +I+ + V + + ++ + + + + ++ G+ P +++ F Sbjct: 168 ISDIRQDIRVIE--PVEVVYIQVANPYKYIDAFTKAWDRLLKYVRKGGI-PDGETEYFTF 224 Query: 58 AWDDPAT-TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D P T+PE R +C + S+ + + + + GG YAV G + Sbjct: 225 SRDVPTIITSPEQQRIFVCVNNSDHLEPSGI-IGVQTIEGGEYAVFTMYGAYRQLPDVYT 283 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 I R+WL S ++R + + Y N + V E +L T++Y+P++ Sbjct: 284 YIYRYWLFNSDYQIRDSMVFEKYLNSPDEVEEDKLMTEIYIPVS 327 >UniRef50_A6TUU5 Transcription activator, effector binding n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUU5_ALKMQ Length = 291 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 8/163 (4%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSP----ELLNYSVAKFIMWRKETGLSPVNQSQTFG 56 MT L + I +I + + EL + K W + L + S+ F Sbjct: 132 MTIDPLKIEIRREKAIKLIYTRYTGPYKRDSELFSNLFQKLYQWADQRRLI-SSTSRWFV 190 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D T + R +C SV + + L G+YAV + E + + Sbjct: 191 IYHDFGNETDEDQLRLSVCMSVDRNL-AVSGDIGILNLHEGQYAVGSFMVEPSEYDKAWY 249 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + WLP SG K L HY + E + ++Y+P+ Sbjct: 250 YMYGKWLPTSGHKPDDRFSLEHYPKVEEQGD--KRLVEIYIPI 290 >UniRef50_Q2RP02 Transcription activator, effector binding n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RP02_RHORT Length = 160 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 2/150 (1%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 + P++ A L H + K W G+ ++Q G+++DDP TT E Sbjct: 6 VRPLPAMIFASLRHIGPYGEAGETFRKITDWAVSEGVMT-PETQILGLSYDDPKTTPAEI 64 Query: 70 FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEK 129 R+D C ++ P+ G+ L + + H G + + T + Sbjct: 65 LRYDACVTLKTPV-ALPPGMQLMALPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLV 123 Query: 130 MRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + Y N L T++ V + Sbjct: 124 PIATGAIEIYVNDPATTAPADLITELGVAV 153 Score = 48.7 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%) Query: 13 FPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRF 72 P+ M+ H+ E + + K E + + +DPATTAP Sbjct: 88 LPACSWVMMTHKGPYETMGETFTKLYAALAEHPTLVPIATGAIEIYVNDPATTAPADLIT 147 Query: 73 DICGSVSEPIP 83 ++ +V E Sbjct: 148 ELGVAVLEGAD 158 >UniRef50_B0SZN8 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=B0SZN8_CAUSK Length = 296 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 T V + + VA+ HR PE L+ ++ +FI WRK GLSP TF + + Sbjct: 139 TFTPDQVALREVAPTRVAIFEHRGDPETLDATIQRFIAWRKAAGLSPRTN-PTFNIWHSE 197 Query: 62 PATTAPEAFRFDICGSV--SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 P + D+C V +PI + V GE+ GGR AV R G+ ++ + Sbjct: 198 RRPPDPADYSMDLCVGVGADQPIDSSSETVKAGEIPGGRCAVLRVTGDTHNLEPAALYLY 257 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 R WLPASGE+MR PI EQ ++++PL Sbjct: 258 RDWLPASGEEMRDFPIYCQ--RFFLDAPEQGTAAELFLPL 295 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 V+ E+ R A+ H G+ + + T+ I W A+G R P + + Sbjct: 142 PDQVALREVAPTRVAIFEHRGDPETLDATIQRFIA-WRKAAGLSPRTNPTFNIWHSERRP 200 Query: 146 VTEQRLETDVYVPLA 160 D+ V + Sbjct: 201 PDPADYSMDLCVGVG 215 >UniRef50_UPI00019685A1 hypothetical protein BACCELL_00434 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI00019685A1 Length = 377 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 11/159 (6%) Query: 7 DVNIIDFPSIPVAML------PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + I ++ + + + + + + + K L ++ ++ D Sbjct: 222 EAKIKRINTLKAVCIEVGDTFRDKYAYTTI---WKQLLHY-KAVHLQNGPGNRFVSISQD 277 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 +P T E RF I V E ++ + E+ GG YAV R+ G D+ I Sbjct: 278 NPWVTPMEQRRFYIGVLV-EGRANSEGKLLLREIPGGMYAVFRYKGSYSDLPEFYKTIYN 336 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W P S ++ Y N + + L T++Y+P+ Sbjct: 337 QWFPYSMYHQKRPLTFEVYLNAPDETPVEELLTEIYIPI 375 Score = 39.5 bits (91), Expect = 0.036, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 22/71 (30%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEA 69 + + P A+ ++ S L + + TF V + P T E Sbjct: 307 LREIPGGMYAVFRYKGSYSDLPEFYKTIYNQWFPYSMYHQKRPLTFEVYLNAPDETPVEE 366 Query: 70 FRFDICGSVSE 80 +I + + Sbjct: 367 LLTEIYIPIDK 377 >UniRef50_C6IVG7 DNA gyrase inhibitory protein, GyrI n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVG7_9BACL Length = 153 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 7/155 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ + P A + N ++ + W E L + + G+ WD+P T Sbjct: 1 MEFKVEKLPRYRFAYVRQVGPYGPGNIQAMERMKRWGAERNLLN-HSAILLGIPWDNPET 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T P+ R+D C +S+ P + V GE++GG Y V + ++ L Sbjct: 60 TPPKNCRYDACLVISQDEPLDDDTVHIGEISGGDYLVCTIKHTAQAMQQAWAELMPT-LQ 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 A G ++ PIL YT + + ++ VP+ Sbjct: 119 AKGYQIDDRPILERYT---GEMLLKEF-CEICVPI 149 >UniRef50_A8EWB5 Transcriptional regulator, AraC family n=4 Tax=Campylobacterales RepID=A8EWB5_ARCB4 Length = 292 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 4/154 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + +I+ P I + H+ + + + K W + Q + D+P T Sbjct: 139 EPSIVKMPEIKGYYIRHKGYDKSIKKTWQKLQTWIYTNDIKEYKQ---MALHHDNPIITP 195 Query: 67 PEAFRFDICGSVSE-PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E ++ + + + + + + G YA G+ D+ + + WL Sbjct: 196 LEDCQYIAIVVLEDKEKASLDFLLPSLIIPKGVYAKFSLSGKYGDVIKLIQWVYHTWLIE 255 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG + P Y + D Y+P+ Sbjct: 256 SGYETTPNPSYTIYHKNHFLSDDGEFILDYYLPI 289 >UniRef50_C4UFH4 DNA gyrase inhibitory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFH4_YERRU Length = 159 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 9/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + II+ + V + E + + W + + WD+P T Sbjct: 1 MAFRIIEKTPLQVISMRVVGPYGETIPQGFNQLFSW---HQHHQIPAQTWLALYWDNPET 57 Query: 65 TAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 T R D+ SV++ + GV + GG YAV R D + + Sbjct: 58 TPAAELRADVACSVADDFVLPANASEGVLLQVIPGGTYAVYRTRVIDGDYAKAWGELYGQ 117 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 LPASG + Y N + + + D+Y Sbjct: 118 HLPASGYVPAEGACYEVYLNDGQ--ADGYFDIDIY 150 >UniRef50_O34775 SPBc2 prophage-derived putative transcriptional regulator yosT n=2 Tax=root RepID=YOST_BACSU Length = 149 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 10/156 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + + I + P + +A + + F W + G+ + S G+ DDP+ Sbjct: 1 MKITIEELPELRIAYFRNVGEYGGKQNKELMESFKKWAQLNGVF--HNSVILGIPQDDPS 58 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T E R+D+ ++E G+L GG+YAV + +S I + Sbjct: 59 ITPKEECRYDVGVVLNEDFNVL-QPAQVGKLPGGKYAVFLLDHTKEAVSEFWGNIFSE-I 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + MR PI+ YT+ +V VP+ Sbjct: 117 EKNSLTMRGEPIIERYTSQMID----NHLCEVLVPI 148 >UniRef50_B9J2X1 Transcriptional regulator, AraC family n=57 Tax=Bacillus RepID=B9J2X1_BACCQ Length = 159 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 3/156 (1%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V I + PS+ VA + S K + W E L P QS G++ D+P Sbjct: 1 MKVIIKNLPSLEVAFIRRTGSYFEPQDHWGKLLNWSIENKLYPPEQS-FIGISLDNPELV 59 Query: 66 APEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A R D C ++ + + V + GG YA+ + +S + WLP Sbjct: 60 ASHMCRHDACVTIPKNFEKEQHEDVQFKSVDGGLYALYEFYDKPHKLSEVYRYMYAVWLP 119 Query: 125 ASGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPL 159 S L N E +L+ D++V + Sbjct: 120 NSEYSADYDRDNLEFCMNNVAEDLEGKLKVDLFVSI 155 >UniRef50_B0SDP4 Transcriptional regulator, AraC family n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SDP4_LEPBA Length = 289 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 6/154 (3%) Query: 11 IDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVN-----QSQTFGVAWDDPATT 65 + + H S +LL + + L + G++ DDP T Sbjct: 136 KTISPFSILFIRHLGSYQLLPGPIPNSKEMIQLKTLFSKWDLLEFHHKWIGISQDDPDVT 195 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + RFD+ ++SE P G + GG Y R+ G+ +++ I+ + Sbjct: 196 CKDNIRFDLGFTISEKFPSPPDGFGKQTIPGGNYLQIRYTGDYENLPMIYDWILNQYCIV 255 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S K++ P Y N + TD+Y+PL Sbjct: 256 SKLKLKNNPPWECYLN-PFEPIPDKRITDIYIPL 288 >UniRef50_UPI0000383DF5 COG3449: DNA gyrase inhibitor n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000383DF5 Length = 139 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 4/142 (2%) Query: 18 VAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGS 77 +A++ HR P L+ +V +FI WRK L P + TF + + P P FR D+C + Sbjct: 1 MAVMTHRGDPALIAETVGRFIAWRKANHLPPSQHA-TFNILYGGPDQVPPAEFRQDLCVA 59 Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILF 137 GV+ G + GGR AV RHVG D + + + WL SGE++R + Sbjct: 60 TGGKAVAFGSGVAAGIIAGGRCAVLRHVGPDDGLEAALTYLYGDWLSQSGEELRDSLPF- 118 Query: 138 HYTNLAEGVTEQRLETDVYVPL 159 + D+++PL Sbjct: 119 --LQRFPELAGHDSPVDIFLPL 138 >UniRef50_C3BTE5 Transcriptional regulator, AraC n=1 Tax=Bacillus pseudomycoides DSM 12442 RepID=C3BTE5_9BACI Length = 303 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 4/154 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V + I VA + + E ++ K I W K+ + N GV D P T Sbjct: 149 VTLKHVSPIDVAFIRNTGLYEDVDTRLFHKLIQWAKDKKIY-RNDCFLLGVGHDAPTITP 207 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD-DISHTVWGIIRHWLPA 125 E RFD C V +P +S +L GG++A +VG ++ H + + Sbjct: 208 KELLRFDCCIEVDQPFHS-EGKISYQQLEGGQFATVTYVGPYGMNMKHAYQKLYQEIQHN 266 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P++ Y + + +TD+YVP+ Sbjct: 267 KNIEFVGLPVVEIYRTTTINPSYKLNQTDIYVPI 300 >UniRef50_Q12LA7 Transcription activator, effector binding n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LA7_SHEDO Length = 297 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 1/151 (0%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V ++D SI +A++ H L+ S+ FI WR+ P+ S++F + + D Sbjct: 144 KVTLVDLASIELAVVEHSGPVSNLHGSLQAFIGWRRAMHTPPLV-SRSFNLVYHDVKHVP 202 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 +R DI + P+ G+ + +L GRYA+ H G + + + WL S Sbjct: 203 ASEYRLDIGAEIGRPLTAQDVGMVSKQLPKGRYALLAHTGNEASLGEAINDLYGQWLVNS 262 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 GE + P++ V + + T +Y+ Sbjct: 263 GEPLADFPLVLERVTQFPDVAQHKAVTHIYL 293 >UniRef50_Q2C165 Putative transcriptional regulator (AraC family protein) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C165_9GAMM Length = 295 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 5/163 (3%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPV---NQSQTFGVAW 59 ++ I ++PS M+ H+ + + W E + + Sbjct: 128 EKKYEIKIEEYPSRECVMITHKGEYLEGMKTFDILVSWLVENNFYSETSVKSIPFITIPY 187 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD--DISHTVWG 117 +P +A +R DI S++ + N G+ +G ++ G +AV +VG+ + H + Sbjct: 188 ANPLESAGSDYRCDIAISINCKVLPNDLGIFSGTISRGYFAVVTYVGQREVYGFVHAITN 247 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ++ WLP + + APILF + N V E L T V +P+ Sbjct: 248 VLTEWLPETQWEPLPAPILFEHINSPLFVPETELITKVCIPVC 290 >UniRef50_D0TT37 AraC family transcription regulator n=2 Tax=Bacteroides RepID=D0TT37_9BACE Length = 383 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 5/159 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + ++++I ++ +A L + + + + + E P Q + D Sbjct: 222 IQVELSIKKVHNMRIAYLKLERTNNISHSFSLLWKQLLQF-SENYELPSKGCQYVSLTLD 280 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 P T E RF + ++ + G E++ G YA+ R G +++ I Sbjct: 281 YPLITPEEHSRFMVGVTLPQSFET-PKGFGMYEISSGEYAIFRFKGLYHELNRVYRHIYL 339 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S +R+ Y N E L T +Y+P+ Sbjct: 340 DWLPTSDYTLREPFTFETYINTPEKTPASELITAIYIPV 378 >UniRef50_B7V1U1 Probable transcriptional regulator n=6 Tax=Pseudomonas aeruginosa RepID=B7V1U1_PSEA8 Length = 270 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 10/158 (6%) Query: 5 TLDVNIIDFPSIPVAMLPHRC--SPELLNYSVAKFIMWRKETGLSPVNQSQ-TFGVAWDD 61 + I++ P+ V + + + + +FI +E ++ + + ++G+ Sbjct: 119 NMHARIVERPAFSVVGMEYFGSAPGDTIGQLWERFIP--REHEIAGKHDPEVSYGIC--- 173 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 A F + V E P G+ ++ +YAV H G I+ + I H Sbjct: 174 -AQQPNGEFHYVAGFEVQEGWP-VPEGMVRFQVPAQKYAVFTHKGTAPQIAESFQAIYSH 231 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 L G + + +Y G + + D+Y+P+ Sbjct: 232 LLAERGLEPKAGVDFEYYDQRFRGPLDPNSQVDLYIPI 269 >UniRef50_O26725 Putative uncharacterized protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26725_METTH Length = 173 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 5/157 (3%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++++ I VA + R S E + +++ W + GL + +G ++ P Sbjct: 18 EVFMEISEKMVEGIRVAYIECRGSYERIPEYISEVAGWVLKNGLQM--TGRVYGTYYNTP 75 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 E ++I S++ V L R A H G ++ + +I + Sbjct: 76 EEVDEEELLYEIGVSIAGEAEA-DERVKIKNLPSHRVIAALHEGPYTEVGPVIHALI-EY 133 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +G ++ P+ Y N V E L T+V +P+ Sbjct: 134 AMENGYEITG-PVTEVYLNSPLEVDESELLTEVQIPV 169 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 76 GSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPI 135 V + + +S + G R A G + I + + W+ +G +M + Sbjct: 10 LEVDKINGEVFMEISEKMVEGIRVAYIECRGSYERIPEYISEVAG-WVLKNGLQMTGR-V 67 Query: 136 LFHYTNLAEGVTEQRLETDVYVPLA 160 Y N E V E+ L ++ V +A Sbjct: 68 YGTYYNTPEEVDEEELLYEIGVSIA 92 >UniRef50_B3CE13 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CE13_9BACE Length = 283 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 11/156 (7%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNY---SVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + ++ + +A + K + KE L ++ FG+++DDP Sbjct: 133 EPEVLLISPMYIAYIRIIGPYGEKESYELGWGKLCGFLKENKLQ-SKATRWFGISFDDPT 191 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T + RF C SV++ I + + + G+YAV + G + I Sbjct: 192 ITKKKQCRFYACASVAQRIKPSGA-IGTLTIESGKYAVYTYKGSYSGLLRAYTYIYSR-- 248 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G ++R A Y + T +Y+P+ Sbjct: 249 -EKG-RLRNALSFEEYVT--WSDNPAKQITKIYIPI 280 >UniRef50_Q46A44 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46A44_METBF Length = 321 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 5/154 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ + VA + H E + + + W K+ L F V + P Sbjct: 1 MEIKLKIVEEHQVASISHEGLVEEMEEIIGELAGWIKQKRLKITQ--PPFAVYYTSPTEV 58 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 PE +++I + V + + A H G +I ++ + Sbjct: 59 PPEKMQYEIGIPFQGD-TNGDERVKIKIMPKHKILSAIHKGPYAEIGSLYAEMM-QHIIE 116 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 SG +M AP Y N V + L T+V P+ Sbjct: 117 SGYEMIGAP-REAYINTPREVPDNELLTEVVFPV 149 >UniRef50_A6LWY8 Transcription activator, effector binding n=5 Tax=Clostridium RepID=A6LWY8_CLOB8 Length = 151 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 8/156 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN-YSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D+NI P +A + L N + + W KE L +S G+ D+P Sbjct: 1 MDINIEMIPEYKIAYIRKVGPYGLENVQVMEQLKSWAKENSLFN-ERSIIIGITQDNPEI 59 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 T P R+D C VS+ ++ G+ GG+Y V + +D I I L Sbjct: 60 TEPADCRYDACLVVSDEFDFESKNINIGKTIGGKYCVFKINHTVDAIQKAWIEIFLE-LS 118 Query: 125 ASGEKMRKA-PILFHYTNLAEGVTEQRLETDVYVPL 159 K+ I+ YT ++ VP+ Sbjct: 119 KRNYKIDDKSKIIERYTMQMI----SNHYCEICVPI 150 >UniRef50_B5WT45 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WT45_9BURK Length = 323 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 22/172 (12%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V +++ + V H + + + + Q G+ D T Sbjct: 154 SVEVVELAPLDVLCQRHDGPVGTIAQTFRTLMTTLRCNQ--NPQLQQRVGICGRD--ATV 209 Query: 67 PEAFRFDICGSVSEP------------------IPDNRYGVSNGELTGGRYAVARHVGEL 108 FR+ + + + GV L GG YAV R VG Sbjct: 210 ASGFRYHAGIIAASQTAFSRAIERLDESAQQSCVTEPPPGVVPLRLEGGLYAVHRLVGPY 269 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + IS T + WLP SG + + P L Y +L + Q TD+ +P+ Sbjct: 270 ELISPTFRALYSGWLPRSGYRRDQRPGLELYRSLPDRGALQPCITDLLIPIC 321 >UniRef50_D0KW30 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KW30_HALNC Length = 287 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 6/160 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + V P + + S + + + F W +TGL Q GV WDDP T Sbjct: 129 MPVTHGVLPPLKIISQRFVGSYDQVPHYWRVFGAWVTQTGL-DTKQGVFVGVTWDDPDVT 187 Query: 66 APEAFRFDICGSVSEPI----PDNRYGVSNGELTGGRYAVARHVGELDDI-SHTVWGIIR 120 R+D P +++ + GG YA G ++ ++ Sbjct: 188 PKGEIRYDCGFLPQNPALLEQIPTSSDLTHQTIAGGAYAALAGQGHYHELVPDRYQRLVC 247 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP+SG ++ P L + + E ++ +P+A Sbjct: 248 QWLPSSGWQLDLRPALEWFAEAPWRMPEHEWRFEIRLPIA 287 >UniRef50_C5SFE7 Transcription activator effector binding n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFE7_9CAUL Length = 291 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 3/158 (1%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 L + I+ + + L + + LN + LS + + +G DDP Sbjct: 132 ETPLGIEIVAADPLTLTALRNTGAYPELNAVYQRLFDLVFSQ-LSMEHLAGLYGYQHDDP 190 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 TAPEA R ++ V + + + + G YA RH+G+ D I + + Sbjct: 191 RHTAPEACRAEVAVDV-GGKAELTEDLYHIVVPSGLYARLRHLGDYDAIQPAMDTLYLA- 248 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + +G + P+ H+ + E V L D+++PL+ Sbjct: 249 VIDAGYALADQPLHLHFLDDPEEVATADLRCDLFLPLS 286 >UniRef50_C6QIW6 Transcription activator effector binding n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QIW6_9RHIZ Length = 174 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 4/149 (2%) Query: 15 SIPVAMLPHRCSPEL-LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFD 73 + + + + ++GL + + +G+A D+P + R+D Sbjct: 13 PTRLIYVSATGRYSDVIPKVWERLFRQLDDSGLY-ESIGRGYGMAHDNPLDVGSKNCRYD 71 Query: 74 ICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR- 131 C + I + L G YA R G D + TV + + P G Sbjct: 72 ACVEIRSGIEERSLPEFGITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQ 131 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPLA 160 P++ Y + +Q L +D+ VP++ Sbjct: 132 NRPVVSIYMDNPNNYADQDLRSDICVPVS 160 Score = 47.9 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPATTAPE 68 I P+ P A S + + +V +R GL + D+P A + Sbjct: 90 ITTLPAGPYACRRLTGSYDQMRSTVENVYTRFRPLPGLCFDQNRPVVSIYMDNPNNYADQ 149 Query: 69 AFRFDICGSVSEPIPDNRYGV 89 R DIC VS + Sbjct: 150 DLRSDICVPVSTVEETIPSRM 170 >UniRef50_A1JN27 DNA gyrase inhibitory protein n=9 Tax=Enterobacteriaceae RepID=A1JN27_YERE8 Length = 157 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 9/155 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + II+ + + E + + + + + + WD+P T Sbjct: 1 MAFKIIEKQPQQIVSIRVVGPYHETIPKGFDQLSSLYTQYQIPGKD---WLVLYWDNPET 57 Query: 65 TAPEAFRFDICGSVSEPIPDNRY---GVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P R D+ SV++ + + G YAV DD + + Sbjct: 58 NPPAELRADVSLSVADDYVLPPELSDHLQLQVIPAGLYAVYHTRVSDDDYAKAWGELYNQ 117 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 LP SG + + Y N + + D+Y Sbjct: 118 HLPQSGYRPTEGACYEVYLNDGR--ADGYFDIDIY 150 >UniRef50_A4SKL5 Transcriptional regulator, AraC family n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SKL5_AERS4 Length = 302 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 9/154 (5%) Query: 9 NIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIM-WRKETGLSPVNQSQTFGVAWDDPATT 65 ++ P+ VA + E + + + + ++P T + WD P T Sbjct: 152 SVKQMPARRVAYMRRMGPYGKETCEQAHRDLLALFASDEAMTPAG---TLSLYWDIPDIT 208 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R DIC + I R ++ + G YAV + + D + T WL + Sbjct: 209 DETRCRTDICIELGPEIHAGRQ-LTTQTIAAGPYAVCQFIARGDQLVTTWETAFG-WLVS 266 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G P Y D+ +PL Sbjct: 267 KGLSCDDRPCYEQYHAG-TDPDRDHYVFDICIPL 299 >UniRef50_UPI0001850B59 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850B59 Length = 159 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 14/162 (8%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSP-----VNQSQTFGVA 58 ++ I++ + V + S + ++ F E+G+ + GV Sbjct: 1 MNYRIVEKDAFQVIGVSKVVSTVNGENHQAIPTFWDEVNESGVDERIAKLAGNQEYVGVC 60 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTVWG 117 D E F + I + + + E+ +AV VG I Sbjct: 61 MD--FDHPNERFTYFIGAE--DIANVTQTELEKREIPRNTWAVFESVGPMPHAIQAVWQR 116 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W P++G K P Y VT++ +V++P+ Sbjct: 117 IYSEWFPSTGYKHAGGPEFELYL--PGDVTQEDYRCEVWIPI 156 >UniRef50_Q1I6P7 Putative transcriptional regulator n=1 Tax=Pseudomonas entomophila L48 RepID=Q1I6P7_PSEE4 Length = 165 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 10/148 (6%) Query: 15 SIPVAMLPHRCSPELLNYS---VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR 71 ++ +A L +R L +F W + + ++GV +P AF Sbjct: 22 TLHLAGLSNRYDFSRLAELKLLWQRFAPWLGR--VPGQHGHDSYGVCH-NPD--GQGAFD 76 Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 + V+ G + L YAV H G L+ I T I WLPASG++ Sbjct: 77 YLAGVEVTGAAT-LPEGFTTLVLAPQHYAVFEHRGSLECIKTTFDAIFTQWLPASGKRQA 135 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPL 159 A + Y + Q L ++++PL Sbjct: 136 DAAVFERYPAGYDPTAPQAL-MEIWIPL 162 >UniRef50_C7RI56 Transcriptional regulator, AraC family n=4 Tax=Bacteria RepID=C7RI56_ANAPD Length = 282 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 5/156 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D+ I + VA + + + + Q FGV +D Sbjct: 127 MDIKIEKKKAFKVAGIKSDVTKSSNFPKVWDRLVEKVPREKFEEFGSGQIFGVGYDYIMD 186 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-ISHTVWGIIRHWL 123 ++F + +++ + G+ + YA+ G + I II ++ Sbjct: 187 -EEDSFIYLAGFDLTDEVKAKELGLDTLSIPEKEYAIVSLQGPIPKCIHEGWKYIISYFF 245 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 P G + ++P Y + + + +++VP+ Sbjct: 246 PKEGYRHDESPDFEVYGDG--DPNSEDYKMELWVPI 279 >UniRef50_Q07ZY4 Transcriptional regulator, AraC family n=2 Tax=Shewanella frigidimarina RepID=Q07ZY4_SHEFN Length = 301 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 81/169 (47%), Gaps = 12/169 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + + V+I+ F + +A++ H P LL ++A+FI WR++ LSP N +TF + + Sbjct: 133 SEQSYSVDIVSFDAQSLAVMEHHGDPALLPQTIARFIEWRRQFALSPTN-CRTFNLLYSS 191 Query: 62 PATTAPEAFRFDICGSV---SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 P +A +R DI S+ ++ + + + GR A+ ++ G+ ++ + + Sbjct: 192 PELSAKTQYRIDIGVSLNAETQALVSESSQIMLKSIPQGRCAMIKYSGDDIGLTAAIDYL 251 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQR--------LETDVYVPL 159 R W+ A+ +R P+ ++ + ++ + +Y+P+ Sbjct: 252 YRDWVNANDVTLRNYPLFLERLDIGRSTSVEKQSGSPLNIQQVLIYLPI 300 >UniRef50_P33012 DNA gyrase inhibitory protein n=103 Tax=Bacteria RepID=GYRI_ECOLI Length = 157 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 8/157 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE-LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ I VA E + + +MW + P V +D+P Sbjct: 1 MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKE---WVAVYYDNPDE 57 Query: 65 TAPEAFRFDICGSVSEPI--PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T E R D +V P+N GV E+TGG+YAVA DD + + Sbjct: 58 TPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSL 117 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 L S +M P Y N + + ++YV + Sbjct: 118 LQDSAYEMLPKPCFEVYLNNGAE--DGYWDIEMYVAV 152 >UniRef50_C7X8J2 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C7X8J2_9PORP Length = 280 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 10/157 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN---YSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 L+V + + + + + + I + KE ++ G+++DDP Sbjct: 130 LEVEVCEVDDLDLVYIRIFGKYGEAEPYEEAWNLLIGFLKENQAL-SEDTRFIGLSFDDP 188 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T P+ RF C SV + I L G+YAV G + I Sbjct: 189 NVTHPDQCRFYACASVGKEI-IPSGMFGTIRLQKGKYAVYTLKGSYAGLQELYNTIN--- 244 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 R Y + +E + + T +Y+P+ Sbjct: 245 -IDFNYTKRHGMAFEEYVSYSEEDDDTQ-VTKIYIPI 279 >UniRef50_C8Q848 Transcription activator effector binding n=1 Tax=Pantoea sp. At-9b RepID=C8Q848_9ENTR Length = 153 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + +I++ P+ + E + A+ W L Q + + + +P Sbjct: 1 MKTSIVERPAQHWVGYRLQGPWQETVPQGFAQLKDWVARHAL----QGEWMAIYYGNPQV 56 Query: 65 TAPEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 P+ + +V G+ +G L GG Y + +D Sbjct: 57 VPPQELSVETVLTVPADFALAVGEGIQHGTLAGGHYFHTCTEVQNNDFFSAWNAFFAQLQ 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 S ++ P HY + ++Y+P+ Sbjct: 117 QRSDWQVDDRPCYEHYLSDGSQS--GNWLLNMYIPV 150 >UniRef50_B2TBR6 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=B2TBR6_BURPP Length = 297 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 53/152 (34%), Gaps = 2/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + + V L H + + + + Q G+ DPA Sbjct: 145 VELTEIAPFDVLSLRHDGPVATIGQTFRSLMTMLRCDE--NAVMDQRVGICVRDPAVKDS 202 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 ++R I + + V L GG YAV R +G IS T + WLP SG Sbjct: 203 FSYRAAIVAGPRDVPAEASDVVEPLRLEGGLYAVHRLIGPYALISPTFRALYGGWLPQSG 262 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P L Y +Q TD+ +P+ Sbjct: 263 YLRDRRPALELYRLPLVAGLQQTCVTDLMIPI 294 >UniRef50_A4XZN4 Transcriptional regulator, AraC family n=2 Tax=Pseudomonas RepID=A4XZN4_PSEMY Length = 277 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 10/155 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSPEL---LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D + + L R + E + +F + + S+TFGV +P Sbjct: 128 PRFVDAEELLIVGLSERFNVETAQGIAALWQRFGPYIGR--IPGQQGSETFGVCC-NPE- 183 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 +F + V+ G++ L RYAV H G + I T I +HWLP Sbjct: 184 -DDGSFEYIAGVLVNRAAE-VPAGLTLQRLAAHRYAVFLHEGHISSIHETFNAIFQHWLP 241 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +G + AP Y+ + + +++VPL Sbjct: 242 TAGVQTAAAPEFERYSEDFDPMA-GTGRVEIWVPL 275 >UniRef50_C9NSN9 Transcriptional regulator AraC family n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSN9_9VIBR Length = 284 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 5/149 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELL--NYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++++ II P+I + + ++ + E L + F +R ++ + FG+ Sbjct: 127 ISMEPEIITQPAIKLVGIANQYTDEDLSLPRLWSGFAPYRDT--IANRVGDEFFGIYESY 184 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 F + IC + E G+ E+ YA H G + + T+ I Sbjct: 185 EEAEEGTTFVY-ICSARVENFEQVPEGMITREMPEQTYARFTHKGPIAQLEETLRYIWGS 243 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQR 150 WLP S + + P Y + Sbjct: 244 WLPKSAYEYEEKPDFELYPAGFNDADPEN 272 >UniRef50_C8N6W3 DNA gyrase inhibitor n=9 Tax=Gammaproteobacteria RepID=C8N6W3_9GAMM Length = 305 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 7/157 (4%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T D+ VA + + + W GL + + D P Sbjct: 153 MTTDMQTTTLAPCTVAYIRVTGEYGKNYEPATNRLYQWAGAHGL---ADGECLFIYLDSP 209 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T + R DIC +V + G+ L GG YA+ R W I Sbjct: 210 EITPADKCRTDICLTVPDD-TATGNGIEKRHLPGGSYALIRRSVTDPAQYRVYWEEIMSA 268 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + A+ ++ P Y + + V + Sbjct: 269 VIAAQLEIDDRPCFEQYH--HYDAATGKADVSFCVAV 303 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 4/83 (4%) Query: 78 VSEPIPDNRYGVSNGELTGGRYAVARHVGELD-DISHTVWGIIRHWLPASGEKMRKAPIL 136 ++ + L A R GE + + W A G + L Sbjct: 146 INPQEQAMTTDMQTTTLAPCTVAYIRVTGEYGKNYEPATNRLY-QWAGAHG--LADGECL 202 Query: 137 FHYTNLAEGVTEQRLETDVYVPL 159 F Y + E + TD+ + + Sbjct: 203 FIYLDSPEITPADKCRTDICLTV 225 >UniRef50_Q2SHR5 Uncharacterized protein conserved in bacteria n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHR5_HAHCH Length = 278 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 16/170 (9%) Query: 1 MTNLTLD--------VNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVN 50 M N+ ++ + + P+ + + +R S + + +++ R++ VN Sbjct: 114 MENINMNSTQGAAVEPQVKELPAFTLIGMEYRSSDVRDSIPMLWGRYLP-REDEIRGRVN 172 Query: 51 QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD 110 ++G+ FR+ V + P G+ + + RYAV H G + Sbjct: 173 HEVSYGLCL----PLEDGEFRYIAGVEVEKGTP-VPEGMVSVTVAAARYAVLTHTGPVAG 227 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 ++ T LP SG + P Y G + D+Y+ +A Sbjct: 228 LNATFRKACSRDLPESGLERVDGPDFELYDRRFMGPDSAESQVDIYLSIA 277 >UniRef50_A4SSW3 DNA gyrase inhibitor n=2 Tax=Aeromonas RepID=A4SSW3_AERS4 Length = 286 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 7/140 (5%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSV-AKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 I+ + +A + V + W GL+ Q + + D+P T P Sbjct: 139 KTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARGLA---QGEWIFIYHDNPEVTPP 195 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDISHTVWGIIRHWLPAS 126 R DI +V V + GRYA +R++ + + A+ Sbjct: 196 AQCRTDIGVTVPAGTVGAGE-VEIQLIPAGRYAQSRYLITDRSQYGPRWQEHVGD-IVAA 253 Query: 127 GEKMRKAPILFHYTNLAEGV 146 G P Y +++ Sbjct: 254 GLAFGDGPCFELYHSVSNDP 273 Score = 39.1 bits (90), Expect = 0.049, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 2/77 (2%) Query: 79 SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFH 138 + + E+ A R G + V G + W A G + + +F Sbjct: 128 EDHSSARSNTMKTIEMDARTLAYIRVTGPYGEGYDPVCGQLHQWASARG--LAQGEWIFI 185 Query: 139 YTNLAEGVTEQRLETDV 155 Y + E + TD+ Sbjct: 186 YHDNPEVTPPAQCRTDI 202 >UniRef50_A7GBT6 Transcriptional regulator, AraC family n=13 Tax=Clostridium RepID=A7GBT6_CLOBL Length = 289 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 7/164 (4%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 + N+T+ I P + V + + S LL + F ++ + +G+ Sbjct: 127 LNNITIQPVIKVIPEVKVIGIKGKTSLKNNLLPDLWSAFNK-NSSKIVNKAEPLKYYGIC 185 Query: 59 WDD-PATTAPEAFRF--DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 +D P E + + V+ G+ + G+Y V H G + + T Sbjct: 186 ENDRPTNQFGENVAYSEIVGIEVTS-FDYIPEGMVAKVIPQGKYVVFTHKGSIHKLQETY 244 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W+P S ++ Y +G E D+Y+P+ Sbjct: 245 EYIWGTWIPFSKVELDMRDDFELYDEGFKGANNHLSEIDIYIPI 288 >UniRef50_A5HZP6 AraC-family transcriptional regulator n=5 Tax=Clostridium RepID=A5HZP6_CLOBH Length = 278 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 9/153 (5%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + I + V + + + + F+ + ++DDP+ T Sbjct: 134 KIIIENLADFKVIYERYIGNYIDIGDNWYSFME---RYKTYIKPDTLLIEKSYDDPSITE 190 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 E +D+C +V E + + GG++AV R G + DI T G+ WLP S Sbjct: 191 LEKCIYDLCITVGEDVELEN----VTTIKGGKFAVYRFNGYIHDIFVTFQGVFNIWLPRS 246 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G KM + L Y N+ + D+ + + Sbjct: 247 GYKMDERYGLGIYHNIDRKN--NHVTMDLCIAI 277 >UniRef50_C1DQ04 Transcriptional regulator, AraC family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQ04_AZOVD Length = 325 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 47/139 (33%), Gaps = 4/139 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V + FPS PV + S L+ + +F G P+ +Q G+ D+P T Sbjct: 171 QVRVESFPSQPVLAMRFYGSYALVEDNWRRFAECLDRAGF-PLADAQAVGIVQDNPEITP 229 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + R+D C V +S L R+A H I I W P S Sbjct: 230 NDLVRYD-CAIVDAGFDREHPALSRLILPAARFACLEHRAPYSHIFPVYRTIGSVWGPRS 288 Query: 127 GEKM--RKAPILFHYTNLA 143 GE L Y Sbjct: 289 GECFGAGGTGTLERYRQPP 307 >UniRef50_Q3BUH4 Putative transcriptional regulator, AraC family n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BUH4_XANC5 Length = 307 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 7/156 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 V + D P V L E + + + + W ++ G+ Q G WD P Sbjct: 146 FSVTLRDLPERTVQYLRVHRPFEEGSVQAAAMRLVAWARDAGV---EHHQWLGYLWDQPR 202 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 + R+D+ V+ GV + A G L + WL Sbjct: 203 LASAADCRYDVAVEVTHGRHCGEIGV--FRFPPMKVAEVVIRGGLALEMRAFGWVRDTWL 260 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 PASG P + L + E +P+ Sbjct: 261 PASGYLPTDLPAFEAWLGLPYAHGAEHFELACQIPI 296 >UniRef50_A4XAI8 Transcriptional regulator, MerR family n=2 Tax=Salinispora RepID=A4XAI8_SALTO Length = 274 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 6/158 (3%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET--GLSPVNQSQTFGVAWDD 61 + DV + + ++PVA L S + + + + + + F V D Sbjct: 116 MPYDVIVKEVETVPVASLTLHTSLDAIGADMGRGFGTVVDAIGNAGTEANGKPFVVYHDV 175 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 +IC V V EL GG A H G +IS ++ Sbjct: 176 IDEQTTGDI--EICIPVPAGTVLPSGPVRYRELRGGPIASTVHRGPYQEISPAYH-VVTG 232 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W+ G P Y N + V+ L T+V P+ Sbjct: 233 WIEQEGVHPAG-PPREVYLNDPQTVSPAELLTEVQFPI 269 >UniRef50_C6PVM8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=C6PVM8_9CLOT Length = 277 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 9/152 (5%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 + I + V + + L + F + + +DDP+ T+ Sbjct: 134 ILIQELDDFVVIYERYIGNYIELGKNWYDFTE---KYKDYFKEDTLLIERFYDDPSITSL 190 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + +DIC +V + + + GG++A+ R G + DI G+ WLP SG Sbjct: 191 DQCLYDICMTVDKNCSLDN----VTTIQGGKFALCRFDGLIQDIFAAFQGVFNIWLPDSG 246 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +M + L Y + + D+ +P+ Sbjct: 247 YEMDERYGLDIYRAI--DWESMHVVMDLCIPI 276 >UniRef50_Q5WGK8 AraC/XylS family transcriptional regulator n=2 Tax=Bacillus RepID=Q5WGK8_BACSK Length = 280 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 13/165 (7%) Query: 3 NLTLDVNIIDFPSIPVAM--LPHRCSPELLNYSVAKFIMWRKETGLS-----PVNQSQTF 55 ++ +D I++ + V + N +A F GLS Sbjct: 119 DVEMDYKIVEKDAFTVVGKSIRTTTIGGENNRKIAAFWNESNRNGLSKQLAKNCGPLGLL 178 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-ISHT 114 G+ D E + I + ++ +A+ G + + + Sbjct: 179 GICID--FDKQQENLTYLIAAE--KNSDQIPVDWETRQIPAATWAIFPVHGAMPNAMPKV 234 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W PA+G + P + Y + A+ + + ++++VP+ Sbjct: 235 WERIFSEWFPATGYEHSGGPEMEVYVSDADPYS-KDYYSEIWVPV 278 >UniRef50_A6UD97 Transcription activator effector binding n=14 Tax=Proteobacteria RepID=A6UD97_SINMW Length = 279 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 10/156 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + P + +A L E + +F + + + +GV + Sbjct: 128 PRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFG--NIPGQRGNTAYGVC--TQSD 183 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 FR+ + + G S L RYA+ H G + +I+ T I + W P Sbjct: 184 GEAGRFRYMAAAEIRDN-EALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTWFP 242 Query: 125 ASGEKMRKAPIL-FHYTNLAEGVTEQRLETDVYVPL 159 SG + + P L Y + + +++VPL Sbjct: 243 ESGYRHGEMPDLMERYDERFDPHS-GMGAVEMWVPL 277 >UniRef50_Q2FQG5 Transcriptional regulator, MerR family n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FQG5_METHJ Length = 279 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 11/166 (6%) Query: 1 MTNLTL---DVNIIDFPSIPVAMLPHRCSPEL-LNYSVAKFIMWRK--ETGLSPVN-QSQ 53 M ++ + + D S+ V + + + E + + + + GL V+ Sbjct: 118 MEMFSMIVAEPTLKDIESLRVLSIRDKGTYEEVIPKLIGTLCQYFSSPQRGLEQVSITGP 177 Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 + D ++ V+ +PD G++ + GGR+A A H G D Sbjct: 178 FMTIYHD--GEYRESDADVEVAVPVTGRLPDQIPGITIRTMPGGRFASAIHKGPYQDAHE 235 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + W G + + AP +Y N + V E+ L T++ +P+ Sbjct: 236 SWGKLY-EWTAKQGYEPK-APCRDNYLNDPDDVPEEELLTELLIPV 279 >UniRef50_A8FZF8 DNA gyrase inhibitor n=13 Tax=Gammaproteobacteria RepID=A8FZF8_SHESH Length = 300 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 9/145 (6%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELL-NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 +T++ I+ + +A + ++ W G S N + D+P Sbjct: 150 VTMETTTIE--AGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENA---IFIYHDNP 204 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVG-ELDDISHTVWGIIRH 121 T E R DIC V V GG YA R ++++ +++ Sbjct: 205 EITPDEKCRTDICFRVPADTQA-SGRVELQVFPGGSYAYIRQTVKQMNEYGQAWSELMK- 262 Query: 122 WLPASGEKMRKAPILFHYTNLAEGV 146 + +G + + P Y + Sbjct: 263 LVVDTGLESDERPCFELYHSFDPQT 287 Score = 45.6 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%) Query: 89 VSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTE 148 + + G A R G + W A G A +F Y + E + Sbjct: 152 METTTIEAGTLAYIRVTGPYGQGYEEAMKHLCTWAGAKGFSCENA--IFIYHDNPEITPD 209 Query: 149 QRLETDVYV 157 ++ TD+ Sbjct: 210 EKCRTDICF 218 >UniRef50_C7IEN8 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IEN8_9CLOT Length = 279 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 11/158 (6%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRK--ETGLSPVNQSQTFGVAWDDP 62 +D I S V N ++ + W + E GL FG+ P Sbjct: 127 VMDYKIEKKDSFRVV--TKTRKFTEENRIISIPMFWSEYCEDGLH-QKVCGMFGICL--P 181 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTVWGIIRH 121 + F + I + + G ++ +AV + VG D I + I Sbjct: 182 GEPDCKEFEYGIGCE-EKYVKQIPEGFITIDIPSYTWAVFKCVGAMPDSIQNMWRRIYSE 240 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S ++ + YT + + +++++P+ Sbjct: 241 WLPQSKYELIPGYDIELYTEG--DIKSEDYISEIWIPV 276 >UniRef50_Q13JQ4 Transcriptional regulator, AraC family n=11 Tax=Proteobacteria RepID=Q13JQ4_BURXL Length = 281 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 10/155 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSPEL---LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 D + VA L R + E + +F + + + + +GV ++ Sbjct: 132 PRFEDGKAFLVAGLNERYTNETCAAIPSQWQRFGDYFGK--VPGQVGNVAYGVCYN---A 186 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 + VS+ +S ++ RYAV H + I T I WLP Sbjct: 187 DDNGNIDYLCGVEVSD-FSALPAELSRLRISPQRYAVFSHREHVSTIRRTWNTIWNQWLP 245 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ASG AP Y + V+ ++++PL Sbjct: 246 ASGHIPADAPNFERYDAKFDPVS-GMGGLEIWLPL 279 >UniRef50_Q465L3 Transcriptional regulator, MerR family n=3 Tax=Methanosarcina RepID=Q465L3_METBF Length = 287 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 11/166 (6%) Query: 1 MTNLTLDVN---IIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKE---TGLSPVNQSQ 53 M + + I + P + V + + + + + Sbjct: 123 MELFKMSITEPVIKEIPEMRVISKREKGTFVATIGKLIGEICTSVGSPENQRNRVKVTGP 182 Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 + D +I VS I + L R + G + Sbjct: 183 VMFLCHD--EEYKEIGADIEIALPVSGRISVEDPKMEVKTLPAIRAISVVYRGPYPGVEA 240 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I + + E + +P Y N E V E+ L T++ VP+ Sbjct: 241 GYNQIFSYARENNLETL--SPDRELYFNSPEEVPEEELMTEIQVPI 284 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPE 68 + P+I + +R + + + +E L ++ + + ++ P E Sbjct: 217 EVKTLPAIRAISVVYRGPYPGVEAGYNQIFSYARENNLETLSPDRE--LYFNSPEEVPEE 274 Query: 69 AFRFDICGSVSE 80 +I + E Sbjct: 275 ELMTEIQVPIRE 286 >UniRef50_C4IM74 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=C4IM74_CLOBU Length = 277 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 9/153 (5%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 ++I V + L +F K+ + +DDP+ T+ Sbjct: 133 KISIEIINDQFVIYERRIGNYNELIEKWEEFTDKYKK---YIDENTVFLERTFDDPSITS 189 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 + +DIC +V + V + GG++AV + G + I + + W P Sbjct: 190 ADKCIYDICMTVDKNCDVENTCV----IPGGKFAVYHYKGFPEQIYTAYQNMFQVWFPVV 245 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +++ Y + L D+ +P+ Sbjct: 246 KKRIDNRYGFDIYNKIDCDSMYMEL--DICIPI 276 >UniRef50_B8FSY0 Transcriptional regulator, AraC family n=6 Tax=Clostridiales RepID=B8FSY0_DESHD Length = 291 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 9/164 (5%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW- 59 N+T+ I++ P I VA L + L + + + + FG+ Sbjct: 129 NVTVHPKIVELPEIKVAGLRGETTLRDNRLRELWDRANS-LYIQIPNRIPNGRAFGICEA 187 Query: 60 --DDPATTAPEAFRF--DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 ++ T + F VS + GGRYAV H G L + T Sbjct: 188 CAENTLYTMNDDILFTEVAGIEVSS-FAGLTEPFVQKIIPGGRYAVFTHRGTLGMLPQTF 246 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W + E+M Y G E D+Y+P+ Sbjct: 247 DYIWGTWFLTTKEEMDWREDFELYDERFLGYDHPDSEVDLYIPI 290 >UniRef50_C6CRY2 Transcriptional regulator, AraC family n=69 Tax=Bacillales RepID=C6CRY2_PAESJ Length = 301 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 16/169 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHRC-----SPELLNYSVAKFIMWRKETGLSPVNQSQT---F 55 + ++ II P+ V R + + + ++I + ++ Sbjct: 132 IRMEYKIITKPAFKVIGYEIRTRANGDNHKEIPAFWQEYIQKELYKNIPNRVHKESPVEL 191 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD----- 110 G+ ++ ++F + I G+ E G YAV + Sbjct: 192 GICYN--FDMGSDSFSYLIGMEAESFDGVEGEGLVCREFDGAEYAVFTTPKVPREQFSSS 249 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I +T + W P SG + P Y + ++ D+Y+P+ Sbjct: 250 IQNTWMTVFGEWFPHSGYEHAGTPEFELY-DERSNHELSEIQMDIYIPI 297 >UniRef50_C5RQZ2 Transcription activator effector binding n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQZ2_CLOCL Length = 272 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 10/161 (6%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + + D+ I PS V + E + + + + ++ + +D Sbjct: 115 SRMNYDITIKSIPSYKVIAVRDIIPTYEGEGKLWDELCAFAGKNNI--KAIGPSYAIYYD 172 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTG-GRYAVARHVGELDDISHTVWGII 119 ++ ++S I V EL AV H G +++ + Sbjct: 173 --TGYKESDVDVEVVMTISGDI-AETVRVKVKELEAVDEMAVVFHKGHFHEMTSAYRAL- 228 Query: 120 RHWLPASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 WL A+ +M PI Y + T++ P+ Sbjct: 229 AIWLSANEYEM-NGPIRAIYHKGPWSEQNPEEYLTEIQAPV 268 >UniRef50_A3CSG8 Transcriptional regulator, MerR family n=3 Tax=Methanomicrobia RepID=A3CSG8_METMJ Length = 286 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 11/163 (6%) Query: 4 LTLDVN---IIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWR-KETGLSPVNQ--SQTFG 56 ++ + I D P++ L R E + + + + E G P + Sbjct: 121 FSMSITEPVIKDIPTVRALSLRERGIYQETIPRMIRELFTYVCPEDGRQPAARIAGPIMF 180 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D ++ ++ + + V L GGR+ H G + Sbjct: 181 ICHD--EEYRETDADIEVAVPITGSVSLDGTAVEVVNLPGGRFLSVLHTGPYPGVGKAYE 238 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + ++ P Y N V E+ L T+V P+ Sbjct: 239 RLFS-YMNEHRLVPSG-PSRELYLNDPAEVPEEELLTEVQSPV 279 Score = 51.4 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 2/78 (2%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V +++ P + H + + + + E L P S+ + +DPA Sbjct: 211 VEVVNLPGGRFLSVLHTGPYPGVGKAYERLFSYMNEHRLVPSGPSRE--LYLNDPAEVPE 268 Query: 68 EAFRFDICGSVSEPIPDN 85 E ++ V + P Sbjct: 269 EELLTEVQSPVKDLPPSP 286 >UniRef50_C6DEF0 Transcription activator effector binding n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DEF0_PECCP Length = 154 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 10/154 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + + I S+ V L E + + + W +E LS ++ WDDP+ Sbjct: 1 MSIRIELAESMEVLSLRVVGPYYEKIPQGFDEILSWAREHHLSID---KSLAFYWDDPSK 57 Query: 65 TAPEAFRFDICGSVSE--PIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + R D+ + E G+ + GG YAV + E D + + Sbjct: 58 VEADELRADVAITCKEMPSTLPEDVGIRREVIPGGLYAVTHTIVENGDFAKAWDDFYKA- 116 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 + A G Y + + +++ Sbjct: 117 INAQGYCPAGDICYESYLCDGSN---GKWDIEIW 147 >UniRef50_A6LWV9 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LWV9_CLOB8 Length = 272 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 7/156 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 L V + D S+ V S ++ + K + L P + D Sbjct: 122 LKVELKDRKSLIVISRRTITSMSNISSVIGKVFEDIFKMDLKP--SGPVMTIYHDKQEF- 178 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 E ++C V+ + + + EL GG A VG + +++ W+ Sbjct: 179 DVENADCEVCVPVNSRVNAEKNE-NIKELAGGLVASTTFVGPYSRLGEAYAKVVK-WIED 236 Query: 126 SGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPLA 160 +G + AP Y N + V + + T+V P++ Sbjct: 237 NGYEYAGAP-FDIYLNGPQSVKSPEEFVTEVCFPIS 271 Score = 47.9 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT-APE 68 I + VA L + AK + W ++ G F + + P + +PE Sbjct: 203 IKELAGGLVASTTFVGPYSRLGEAYAKVVKWIEDNGY--EYAGAPFDIYLNGPQSVKSPE 260 Query: 69 AFRFDICGSVSE 80 F ++C +S+ Sbjct: 261 EFVTEVCFPISK 272 >UniRef50_D1ARF9 Transcriptional regulator, MerR family n=3 Tax=Bacteria RepID=D1ARF9_SEBTE Length = 267 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 12/154 (7%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 V+I + + L + + + + + + + D Sbjct: 124 QVSITETQPKNILFLRQKMNVSDYGGYLGRLYEIIMKDKYKTIGA--PLSIHHD--KEFD 179 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 PE + +I V + EL+GG A + G +++ +I W+ Sbjct: 180 PENYDIEIAVPVEDKTE------KTRELSGGLCATVLYKGPYSNLTSVYAKLI-QWIETE 232 Query: 127 GEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G K+ AP Y + T++Y P+A Sbjct: 233 GYKITNAP-YEIYLTNPGTTAPENYMTEIYFPVA 265 >UniRef50_P96662 Uncharacterized HTH-type transcriptional regulator ydeE n=105 Tax=Firmicutes RepID=YDEE_BACSU Length = 290 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 16/165 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCS------PELLNYSVAKFIMWR--KETGLSPVNQSQTFGV 57 ++ I + + + + R + K LS V S Sbjct: 128 MNYRIEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISA 187 Query: 58 A--WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDISHT 114 + + + T I + ++ PDN S E+ +AV +G D + Sbjct: 188 STNFSEGRTEENGELDHYIGAATTKRCPDN---FSRLEVPASTWAVFESIGPFPDTLQEV 244 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W P+S + + P N + VT ++++++P+ Sbjct: 245 WGRIYSEWFPSSNYEQIEGP--EILWNEHKDVTSPSFKSEIWIPI 287 >UniRef50_Q187G0 AraC-family transcriptional regulator n=37 Tax=root RepID=Q187G0_CLOD6 Length = 288 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 9/163 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELL-NYSVAKFIMWRKETGLSPVNQSQTFGVAWD--- 60 ++++ I + VA + + + K + + + GV D Sbjct: 126 SMNIRIQKKKAFTVAGVNQQNINSSICASLWQKLFSKVSHEEMLNLGTGEVVGVCHDILS 185 Query: 61 --DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-ISHTVWG 117 + + V++ G+ E+ YAV G + + I + Sbjct: 186 LDNHDVLDSNTINYMAGYIVTDVDKARSMGLDILEIGETEYAVVELTGSVPECIHNGWKY 245 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + + P G P +Y + + + ++++P+ Sbjct: 246 AMEVFFPEHGYVHSGKPDFEYYYEG--DMYSKDYKMELWIPVC 286 >UniRef50_C0YJ67 AraC family transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YJ67_9FLAO Length = 274 Score = 98.4 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 12/161 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 +++ L+ I+ + V E + KF+ + ++ FGV Sbjct: 122 SDVLLEPEIVYLKPMQVYYQSTNTYYNNEEIEVLWEKFME-----NKFHDSGTEYFGVIA 176 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 D+P + R+D C + + + + GG+YA H G + I T I Sbjct: 177 DEPLIKTEISCRYDAC----SSMQSENKKLPSKIIFGGKYARFIHPGSYETIDETYTKIY 232 Query: 120 RHWLPASGEKMRKAPILFHY-TNLAEGVTEQRLETDVYVPL 159 W+ S + PI+ Y E+ T + +PL Sbjct: 233 SRWIFHSELEFSHTPIIEKYERYSEHAENEEEQLTYILLPL 273 >UniRef50_A0M275 Effector binding transcriptional activator protein n=1 Tax=Gramella forsetii KT0803 RepID=A0M275_GRAFK Length = 163 Score = 98.0 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 6/158 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCS-----PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + I + S + + S LL + + + Q +G + Sbjct: 4 EPKIEELKSKKLIGICITTSLADDKTSLLWNRFMRLRGAIERNKGESLYSVQEYGENFMK 63 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 F VS+ + G+ E+ G+YAV H G + + T I Sbjct: 64 GEFDTQSKFNKWAATEVSD-FKEIPKGLEKLEIPAGKYAVFIHKGTASEFAETSNYIFNE 122 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP S + P +G + D+++P+ Sbjct: 123 WLPNSDYDLDDRPHFEVLGADYKGPENPDSKEDIWIPI 160 >UniRef50_B8GHG4 Transcription activator effector binding n=3 Tax=Methanomicrobia RepID=B8GHG4_METPE Length = 155 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 10/158 (6%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT-- 64 ++ II+ V + + + + + + ++ V + + Sbjct: 3 EIQIIEVLPQLVLGMRQKGAYRDIPAMLGELYIYGISHQ--SVLTGPPVFICHEGSVEEA 60 Query: 65 ---TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 ++ + I +S EL GGR A H G +D T + Sbjct: 61 MVANETGDADMEVAFPIEGSIE-GEGPISIYELPGGRMAKVLHRGPYEDCGPTYTRLFA- 118 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W+ G + P+ Y N V + L T+++VP+ Sbjct: 119 WIEEQGLAVTG-PVREVYLNDPTLVKPEELMTEIHVPI 155 >UniRef50_A8MKC5 Transcription activator effector binding n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC5_ALKOO Length = 149 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 10/156 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ + + + + + F K+ + +G+ D Sbjct: 1 MEGKLFNIQGFKAVGISYFGDNANGEIPRLWEAFNQQYKDIK-NKSKSMFYYGICDSDMD 59 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 A F + C V + D + + GRY V + G++ D+ I WL Sbjct: 60 --AQGRFHYTACVEV-DHFEDIPENMEAKAVPEGRYLVYTYSGDIKDLGEFYGNIFSKWL 116 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 PAS +M P L Y E D+Y+P+ Sbjct: 117 PASEYEMDYRPQLELYDERFMQNGE----FDIYIPV 148 >UniRef50_C7XCD5 Transcriptional regulator n=4 Tax=Bacteroidales RepID=C7XCD5_9PORP Length = 289 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 8/157 (5%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 + + + + + L H+ L+ S+ K + W GL ++ V Sbjct: 1 MNYTFELKELHATHIVYLHHQGDMSLIPSSIRKLMQWAGAKGLINGPANKLISVYQH--- 57 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 + DI +V + + +S G L+GG YA+ D+I + Sbjct: 58 --EGKELSVDIGLTVPQEVEGENE-ISKGLLSGGLYAIGHFEIGTDEIPAAWSLMYT-LT 113 Query: 124 PASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 K Y ++ + + + D+ +P+ Sbjct: 114 SKHQCKPCAGKSFEIYQSIPLDQHPQDKCMIDLCIPV 150 >UniRef50_D2R723 Transcription activator effector binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R723_9PLAN Length = 155 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 15/162 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + L D P++ A + R S E + +F + + +++G++ Sbjct: 1 MQLTPVFRDVPAMRWAGIMRRYSMESRCEIPQLWGQFAPHIGQ--IPGQVGRRSYGIS-- 56 Query: 61 DPATTAPEAFRFDICGSVSEPIPDN-RYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 + FD +V G++ + ++AV H G + ++ + I Sbjct: 57 --VLVSGTDCDFDYMAAVEVHSSAEIPDGMAEFAIPPQKFAVLLHTGHVSELPGFIDAIY 114 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLE--TDVYVPL 159 R WLP SG + P + YT G +++ +++VP+ Sbjct: 115 RQWLPTSGLRTAPGPCIECYTEEFCG---EKMIGGMEIWVPI 153 >UniRef50_Q4K667 Transcriptional regulator, MerR family n=2 Tax=Proteobacteria RepID=Q4K667_PSEF5 Length = 295 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 7/149 (4%) Query: 13 FPSIPVAMLP-HRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR 71 S + + + P + +F R++ T+G+ +R Sbjct: 152 LASQRIIGMAWQQDDPGTIAELWQRFEP-REQEIQRLAEPVGTYGIC----QPLEDGQWR 206 Query: 72 FDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMR 131 + V+ P G+ E+ YA H G + + T WLPA+G Sbjct: 207 YVAGLPVAADAPLVP-GMVELEIPARHYARVEHHGSVATLPETFRAAYSEWLPAAGLMPI 265 Query: 132 KAPILFHYTNLAEGVTEQRLETDVYVPLA 160 A + G ++Y+PL+ Sbjct: 266 DAVEFEYTGERFLGPMHPDSVVELYIPLS 294 >UniRef50_Q81D65 Transcriptional regulator, MerR family n=59 Tax=Bacillus cereus group RepID=Q81D65_BACCR Length = 270 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 7/159 (4%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + V+I + P VA + + + + +S S + V D Sbjct: 115 EMNYHVSIKEIPERTVASVRKIIPSYNCEGDLWSVLMQEIQMKNISIAQPSYSIAVFHDH 174 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 +I S+ +N V+ + A G + + V Sbjct: 175 --EYKENDVDVEIQLSILGK-HENTKDVTFKNMESTNVASITVNGSYEQM-TAVNEAAAK 230 Query: 122 WLPASGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 W+ G K+ P+ Y + + T+V P+ Sbjct: 231 WIETEGYKLAG-PMFNIYHVSPAMELDPNKWVTEVCYPI 268 >UniRef50_Q28T08 Transcription activator effector binding n=1 Tax=Jannaschia sp. CCS1 RepID=Q28T08_JANSC Length = 267 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 14/164 (8%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSP-----ELLNYSVAKFIMWRKETGLSPVNQSQTFGV 57 + ++ P+ P + C+ + + + + + ++G++P+ S V Sbjct: 112 SAEMEFTRKTLPAQPYIYVERECAYGPEIADAMGSAFGEIFAFVGQSGITPL--SMPMSV 169 Query: 58 AWDDPATTAPEAFRFDICGSVS-EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 P+ RF VS + + + L G H G D ++ T Sbjct: 170 Y----TGMDPKILRFRGGVIVSTDDAAKAEGAIKSDALPAGDVMHVIHKGPYDTMNLTHK 225 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + L A G P YT+ + L T+++ +A Sbjct: 226 ALW-EHLEAQG-TPGTMPTWEIYTDDPGDTAPEDLRTEIFCTIA 267 >UniRef50_D1JG23 Transcriptional regulator, MerR family n=1 Tax=uncultured archaeon RepID=D1JG23_9ARCH Length = 332 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 15/160 (9%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQ-------SQTFGVAW 59 + + D S V + + E + + + I P NQ + Sbjct: 179 EPIVKDVSSQRVLSRREKGTYEEV---IPRLIGELSGRVFGPENQRARVKCTGIPITIYH 235 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 D+ + ++ VS I L G+ H G D + Sbjct: 236 DN--EYKEKDADIEVALPVSGNITVGPE-YEVKILDEGKVVSYIHKGPYQDAGGAYRAVF 292 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ G K+ Y N + E L T++ VP+ Sbjct: 293 -EYIDKKGLKVVGNY-RELYLNDPKETPETELLTEIQVPV 330 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 2/74 (2%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + + V H+ + + + + GL V + + +DP T Sbjct: 261 EYEVKILDEGKVVSYIHKGPYQDAGGAYRAVFEYIDKKGLKVVGNYRE--LYLNDPKETP 318 Query: 67 PEAFRFDICGSVSE 80 +I V + Sbjct: 319 ETELLTEIQVPVED 332 >UniRef50_A6LYZ8 Transcription activator, effector binding n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYZ8_CLOB8 Length = 290 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 9/162 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSPVNQSQTF-----GV 57 L I+ F V + S E N K ++ +N ++ G Sbjct: 130 NLQPEIVTFQPKCVVGFRYYMSIEKNNSIEMWEKLNAQLEKQKYISMNNNRYSIYETSGT 189 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 + E F I S+ + G+ E++GG+YA H G + ++ T Sbjct: 190 CLQNTFNKNSETTLF-IGIETSDD-NNIPEGMELKEISGGKYAKFVHKGTVKNLISTYHY 247 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W P S ++ L YT G ++ + ++Y P+ Sbjct: 248 IWGVWFPNSSFQLDDRDDLECYTEKFLGAEDEESQIEIYFPI 289 >UniRef50_A5N0X9 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N0X9_CLOK5 Length = 275 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 9/161 (5%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW-- 59 N ++ + + + V + S + + + K + GL P+ + + Sbjct: 118 ENREFNIILKEREPLTVLSIRDNISMDYIGSLIGKIYENVYKNGLKPIGN--IMSIYYLQ 175 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 ++ + ++C V + N +S + GG +A VG +IS ++ Sbjct: 176 NEEEDFNHDNADVEVCIPVDKEFSSNE--ISTRIMEGGLHAYTTFVGPYSEISQAYGAMM 233 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 W+ + K+ P Y E Q T+VY P+ Sbjct: 234 -EWVKHNKYKIS-RPPFEKYIKGPEEGCNPQDFVTEVYFPV 272 >UniRef50_A8UMK3 Putative uncharacterized protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UMK3_9FLAO Length = 159 Score = 96.1 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 17/161 (10%) Query: 6 LDVNIIDFPSIPVAMLP---HRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ +I + + H + +F+ + ++ + Sbjct: 4 MNPKVIQISEKNLIGMKSTMHHGQFSNIVTLWKRFMP--NRRIIKNAVNNEFIALQEYID 61 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 AF C V+ + D G+ + G YAV G S T I+ W Sbjct: 62 FNNFEAAFDIWACIEVT-NLDDITDGMETFTIPEGAYAVFLQKGMDA--SKTYQKIMTEW 118 Query: 123 LPASGEKMRKAPIL----FHYTNLAEGVTEQRLETDVYVPL 159 LP SG + P Y N + E D YVP+ Sbjct: 119 LPTSGYIIDDRPHFQVMGEKYKNGSPDSEE-----DFYVPV 154 >UniRef50_C2G4Y4 AraC family transcriptional regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2G4Y4_9SPHI Length = 278 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 12/158 (7%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 L II V + + F+ P + +G+ D+P Sbjct: 129 ILQPQIIYVRPTTVYYRSSFINYIDTEIESQWDTFLQ-----NEFPEQGNDFYGIVADEP 183 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 R+D C + + + + GG+YA H G + I T I W Sbjct: 184 LIRENLNCRYDTC----SSLQSLTSRLPSKTIGGGKYAQFTHYGRYETIEDTYSQIYSGW 239 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTE-QRLETDVYVPL 159 + +G + P++ YT + + T +++PL Sbjct: 240 ILTAGLRFSHTPVIEKYTRHPDNTDSVEEQITYIWLPL 277 >UniRef50_C7NJZ3 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJZ3_KYTSD Length = 276 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 15/167 (8%) Query: 3 NLTLDVNI--IDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 T+ + I PS + +L +FI GL+P+ GV Sbjct: 116 EKTMSIEISETTLPSTTMVLLRGAIPSYSEEGVLWEQFIPELGRQGLTPIGPG---GVVE 172 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 +DP + V+ P R + EL R A G IS + Sbjct: 173 NDPTYVEAGP-DVSVWLPVA-PGTTARGPLEVHELPEQRAVKATITGPYSQISEAHAQM- 229 Query: 120 RHWLPASGEK---MRKAPI---LFHYTNLAEGVTEQRLETDVYVPLA 160 ++ G P+ + Y + E L T+VY PLA Sbjct: 230 AQYMGQEGLTEASPGDGPVGKVVNRYLSDPSNTPEADLLTEVYRPLA 276 >UniRef50_Q0AX83 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX83_SYNWW Length = 152 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 13/156 (8%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELL----NYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + + + + P + R + E L + + + E G+ P + G Sbjct: 1 MQYQFVVEEKKAQPTISVRTRTAVENLPQVLGKAYGAIMNYLFEIGVQPAGE-PYVGYF- 58 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 + + V++P+ N + E+ G+ + G + I I+ Sbjct: 59 ----NMDMQDLDLECGLPVAQPVVGNDK-LKPSEIPAGKQVSCLYTGPYNQIEPAYNAIM 113 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDV 155 W+PA+G Y N E L T + Sbjct: 114 A-WIPANGYTPTGV-CYEFYLNDPAETPENELLTKI 147 >UniRef50_B1HRP5 Transcriptional regulator, AraC/XylS family n=3 Tax=Bacillaceae RepID=B1HRP5_LYSSC Length = 287 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 15/165 (9%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPE------LLNYSVAKFIMWRKETGLSPVNQS---QTF 55 + I++ V + + + + + + L +N Sbjct: 127 PMKYKIVEKDKFQVVGVKRTYNCQDGENTREIPLFWQEINESGFDHQLYQLNNGNINGVL 186 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHT 114 GV + + I + + D + E+ ++ V G D + +T Sbjct: 187 GVCVPNTNQGQQGFIDYWIA---TNHVGDVGEDLLTMEVPASKWVVFEVHGPMPDAMQNT 243 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W P++ + L Y +++++P+ Sbjct: 244 WKQIYSEWFPSNPYEPAGTAELEVYPEEDAYSP--DSYSEIWIPI 286 >UniRef50_Q0W824 Putative transcription regulator (MerR family) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W824_UNCMA Length = 287 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPEL-----LNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 T + I + P + V +P+ + + + + G VN + Sbjct: 125 TTTEPIIKEIPEVRVISKRGTGAPQQVIPGLIGAVMQQIFSPANQRG--NVNICGPITLL 182 Query: 59 WD------DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDIS 112 ++ P ++I + I G L GGR + G ++ Sbjct: 183 FNGETLTKTPEEWGIAHLEWEIAVPIVGRISVEP-GFEVKALPGGRMVTIVYTGPYHEVG 241 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +I ++ + G + Y N + V E +L T++ +P+A Sbjct: 242 GAYTKVI-DYIGSHGLTV-NGLCREMYLNNPQEVPESKLMTEIQMPVA 287 >UniRef50_B8L7S8 Transcriptional regulator, AraC family n=2 Tax=Stenotrophomonas RepID=B8L7S8_9GAMM Length = 285 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 12/154 (7%) Query: 8 VNIIDFPSIPVAML--PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 ++D P+ VA + H A W + P +FGV + Sbjct: 137 PRLLDTPAFQVAGIGMRHTRDSGG-----AIPGQWAQLNREWPAPAPISFGVCCNSD--- 188 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 F + + + + RY VA H G + I T + ++ +LP Sbjct: 189 DEGGFDYIAALP-ASALSTVPAHWQRVAVPARRYLVAWHGGHISSIRSTWFWLLDQYLPG 247 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +G + AP L Y + T ++++P+ Sbjct: 248 TGLSLADAPDLERYDTRFDEHT-GNGGVEIWLPV 280 >UniRef50_C1FU00 Transcriptional regulator, AraC family n=8 Tax=Firmicutes RepID=C1FU00_CLOBJ Length = 290 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%) Query: 3 NLTLDVNIIDFPSIPVAMLPH--RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 ++ ++ I S + + E +V K G P + G+ Sbjct: 131 DIEMNYRIEKKDSFRIVGISEPLETEMEKNFETVPKMWGTAAMNGTIPRLAAMMDGIPMG 190 Query: 61 DPATTA---PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWG 117 ++ + +R+ I + S+PI + G+ + +A+ G + Sbjct: 191 LLGVSSCNNLDNWRYYIAVASSQPIEN---GLEEYIVPSSLWAIFSGKGTAKSMQELEKR 247 Query: 118 IIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 II WLP SG + AP + Y + E +V++P+ Sbjct: 248 IITEWLPTSGYEYGNAPDIEVYLK----ADPEDTEYEVWIPV 285 >UniRef50_B9M8P4 Transcription activator effector binding n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8P4_GEOSF Length = 221 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 47/157 (29%), Gaps = 4/157 (2%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELL--NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 ++ I + + + S +F+ R E + + Sbjct: 65 NMEPRIEILEPKKLIGIHKKMSLSNNKTAELWREFMPRRMEVKDRSTTDYISMQKYDNCW 124 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + F VS + + + L GG+YAV H G + T I+ W Sbjct: 125 TFSPDAVFEKWATVEVSS-LEEIPTSMETYLLQGGKYAVFTHHGPASAAAGTFQYILGEW 183 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP S + + + +++VP+ Sbjct: 184 LPKSSYNLDDREHFEVLPEGYNPIDP-EAKEEIWVPI 219 >UniRef50_Q4K7X3 Transcriptional regulator, putative n=2 Tax=Pseudomonas fluorescens RepID=Q4K7X3_PSEF5 Length = 162 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 28 ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRY 87 + + +F+ + + +T+G+ +P F + +S+ + D Sbjct: 35 QDIGLLWQRFVPHIGK--VPGQVDRKTYGICC-NPD--GQGGFEYIAGVEISK-LDDLPE 88 Query: 88 GVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVT 147 E+ YAV H G L D+ T I WLP SG + AP Y+ Sbjct: 89 RYRWIEVQPQHYAVFEHGGALQDLPRTFDYIWNTWLPQSGREAADAPEFERYSADFNPQA 148 Query: 148 EQRLETDVYVPL 159 ++++PL Sbjct: 149 -GTGVLEIWLPL 159 >UniRef50_C8N9B6 AraC family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9B6_9GAMM Length = 263 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 8/156 (5%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 V++ + VAML H + L + + + G + +Q++ F + PA Sbjct: 114 YPVHLETRAPVTVAMLAHSGECQRLGDTFYQLESLLRLRG-AETSQARAFSI---HPAID 169 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 A + E + GE+ GGRYAV RH G D+ ++ W PA Sbjct: 170 PLHADKHVAASVAPEYA---MAPLQAGEIAGGRYAVLRHRGPYADLDSVYDWFVQEWFPA 226 Query: 126 SGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPLA 160 +G+ + P++ Y + + + Q+ D+ +PL+ Sbjct: 227 AGQHIASDRPVILEYYDPSSDIPVQQKRVDICIPLS 262 >UniRef50_A1ZPC8 Transcriptional regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZPC8_9SPHI Length = 159 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 7/157 (4%) Query: 8 VNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVA---WDDP 62 +I + P + + S +F+ R+E + V + Sbjct: 4 PSITEIPECKLIGMHTDLSLIDNKTQSLWQQFMPRRQEVHQRVGQSFYSMQVYAPGFSMQ 63 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T F VS + G+ L G+YAV H G T I W Sbjct: 64 NFTPHTVFTKWAAVEVSS-FENVPKGMHAFTLPSGKYAVFIHKGPASAFKPTFDYIFGEW 122 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP S + + P E +V++P+ Sbjct: 123 LPKSAYTLDQRPHFELLPEGYVPTDPN-AEEEVWIPI 158 >UniRef50_C5DA82 Transcription activator effector binding n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA82_GEOSW Length = 160 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 15/164 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE------LLNYSVAKFIMWRKETGLSPVNQSQT---FG 56 + +I+ S V + S + + L +N Q G Sbjct: 1 MKYKVIERDSFQVVGIKREFSLVNGENLVDIPKLWDEVNEDGTVDLLWKLNNGQIKGVLG 60 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTV 115 V + T + + + + P+ G+ E+ ++ V G D + Sbjct: 61 VCVTNSGTQSKQVMDYWVATEYDGDTPN---GLLKFEVPASKWVVFEVHGPMPDAMQKAW 117 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLP+S + P L YT+ +++++P+ Sbjct: 118 NQIFSEWLPSSSYEHAGTPALEVYTDENPLSP--DFYSEIWIPV 159 >UniRef50_Q5WAV0 DNA gyrase inhibitor n=2 Tax=Bacillus RepID=Q5WAV0_BACSK Length = 119 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 8/126 (6%) Query: 34 VAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGE 93 + F W K G+ S G+ D+P T E R+D+C +++ + GE Sbjct: 1 MENFKKWAKLNGVFN--DSIILGIPRDNPEITPKEECRYDVCVVINKDF-NVTKPAHIGE 57 Query: 94 LTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLET 153 +GG+YAV + +S I + + +R+ PI+ YT+ Sbjct: 58 FSGGKYAVFLLDHTKEAVSEFWGNIFSE-IERNNLSIREQPIIERYTSQMID----NHLC 112 Query: 154 DVYVPL 159 ++ VP+ Sbjct: 113 EILVPI 118 >UniRef50_Q97LX8 Transcriptional regulator (HTH_ARAC-domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LX8_CLOAB Length = 288 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 14/165 (8%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETG-----LSPVNQSQTF 55 ++ I S +A + R S + N + +F K++G + Sbjct: 125 EENMNYKIETKKSFKIAGVSKRISTKEGNNFKIIPEFWDEVKKSGQCEIIEKNAGKLGVM 184 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHT 114 GV E FD +V + E+ +AV +G D + Sbjct: 185 GVC----TNFDCEYQEFDYLIAVEGDKIEGLDNYVVIEVPELSFAVFESIGPMPDALQDV 240 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W PA+ + + P + Y ++ +++VP+ Sbjct: 241 TRRIFSEWFPATKYEEAEGPEIEVYL--PGNPQDKDYRAEIWVPV 283 >UniRef50_Q8YZW0 Transcriptional regulator n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YZW0_ANASP Length = 290 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 9/158 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPE-LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 +V I I VA + + + + + G+ + W DP Sbjct: 138 NYEVVIKKVAPIQVASIRQILPDNPSIGQLYGEISEYLAQNGV---KAGDYYAGIWHDPG 194 Query: 64 TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRY-AVARHVGELDDISHTVWGIIRHW 122 + + S+ I N + EL G A H G + ++ ++ W Sbjct: 195 YKDTD-IDAEAVISIEGSIKGNE-RIKIYELPGSETTACLIHHGSYETLAQAYATLVS-W 251 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + A+G + AP Y T++ P+A Sbjct: 252 IEANGYNIT-APNREVYIIGGNEQNNDSYVTELQFPVA 288 >UniRef50_C9RC23 Transcriptional activator ligand binding domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RC23_AMMDK Length = 158 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 5/156 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ I + P VA L + E +V + W GL+ V +P Sbjct: 1 MEITIKELPPTKVAYLRKKGDMESFPLAVQELEKWIVNAGLAI--SGPPVLVYLSNPVGM 58 Query: 66 APEAFRFDICGSVSEPIP-DNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 +++ V+ EL + A +H G I + G R Sbjct: 59 PHPFREWEVQIPVTGEAEVVEEEDRGVKELPQRKVACVQHQGGFRAIEFILPGFFRAIYE 118 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 G ++ + P Y +L G + + T+V P+A Sbjct: 119 Q-GYRL-EGPAEEVYPDLKGGEIDLEMVTEVRFPIA 152 >UniRef50_B8K3P3 Transcriptional activator n=2 Tax=Vibrio RepID=B8K3P3_VIBPA Length = 306 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 19/168 (11%) Query: 7 DVNIIDFPSIPVAMLPH--RCSPEL-------LNYSVAKFIMWRKETGLSPVNQSQTFGV 57 +V + P+ + + L + + T LS + GV Sbjct: 140 EVRVETKPAFILKGMRGEITGLFSLDPNFADVVPKLWQRLDAEANSTSLSFGH---CLGV 196 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIP------DNRYGVSNGELTGGRYAVARHVGELDDI 111 + + I ++ + YA +H G +D + Sbjct: 197 VDVTKVAFDGSNLFYWAGIELRSDIAMPALPSVVSEQLAILNVPKQTYAAVKHKGPIDRL 256 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T+ I HWLP SG + L Y + + E + +VP+ Sbjct: 257 PQTLEWFILHWLPTSGYRGVDGYELEVYPDDYQADA-AHAEMEYWVPI 303 >UniRef50_C7TEN0 Phage-related DNA gyrase inhibitory protein,GyrI n=2 Tax=Lactobacillus rhamnosus GG RepID=C7TEN0_LACRG Length = 151 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 20/162 (12%) Query: 6 LDVN---IIDFPSIPVAMLPHRCSP-ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 ++ I VA + F W K GL S G+A D+ Sbjct: 1 MEYRKVHIEYMKETNVAYFRRMGPYGSENGKLMHSFKQWVKAEGLF--EGSTILGIALDN 58 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P R+D+C +++ + L +YA+ + I+ + Sbjct: 59 PQNVPDANCRYDVCLIINKE-HLKNNRIKQRPLPSIKYAIFKIPHTEIAINEFYKKL-NQ 116 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLE----TDVYVPL 159 + K+ PI+ Y +Q+L ++ +P+ Sbjct: 117 IICEKQLKVLNKPIIERY--------KQKLVSLGFCEILIPI 150 >UniRef50_B8I6X2 Transcriptional regulator, MerR family n=26 Tax=Firmicutes RepID=B8I6X2_CLOCE Length = 273 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 7/160 (4%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 T + +V + P VA + + + ++ + L P + + D Sbjct: 115 TAMNYNVVLKTLPERYVASVRKIIPAYDQESILWNLLMVETETMNLQPAENCYSLAIFHD 174 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 +I G+V P N V + A A + G + + V + Sbjct: 175 --EGYKENDVDVEIQGTVKGTYP-NTEHVVFKTVPEVEIASATYKGSYEQL-TAVNQAVA 230 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 +W+ + + A + Y L T+V P+ Sbjct: 231 NWVNDNSYEFNGA-MFCIYHVSPAQTQNPNELVTEVCYPV 269 >UniRef50_UPI00006DCB74 hypothetical protein CdifQ_04002808 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCB74 Length = 167 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 11/164 (6%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRC--SPELLNYSVAKFIMWRKETGLSP--VNQSQTFGVA 58 N+T+ I + I V + + L KF RK + P + + FG+ Sbjct: 7 NITIKPVIKEIEKIKVIGIKDKVILENNSLPDLWEKF---RKVHHIVPNTLPSKRVFGIC 63 Query: 59 WDDPAT---TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 + F I V+ + + G+YA+ H G LD++ T Sbjct: 64 EAISEIHLVSESMEFNEIIGLEVNS-YDVIPNSFVSKTIKEGKYAIFTHTGSLDNLDKTY 122 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W +S E++ Y G + + D+Y+P+ Sbjct: 123 EYIWGTWFLSSKEELDIRDDFEVYDERFLGPSNVNSQIDIYIPI 166 >UniRef50_D0WQA2 Transcriptional regulator, MerR family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQA2_9ACTO Length = 272 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 14/162 (8%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDP 62 + ++ + P+ V L + + + + G+ P+ D Sbjct: 120 IMAEITVTTHPAQRVVALRTTIDTYADEHKAWIAAMEAIRTQGI-PLASGLCGATFHD-- 176 Query: 63 ATTAPEAFRFDICGSVSEPIPDNR---YGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 E D+ V EP+ + ++ E+ + AVA G D + Sbjct: 177 ----LEYREADVDIEVWEPVGPDAVAADPLTIREIPEQKVAVATFRGGYDQFGPV-NEEL 231 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPLA 160 ++ ASG + P+ Y T+V VP+A Sbjct: 232 AEYIAASGLEFAG-PMYNRYLVGPADTQNTDEYVTEVCVPVA 272 >UniRef50_A9CGS4 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=A9CGS4_AGRT5 Length = 274 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 16/164 (9%) Query: 2 TNLTLDV---NIIDFPSIPVAMLPHRCS---PELLNYSVAKFIMWRKETGLSPVNQSQTF 55 ++ ++V + + V L CS + +F +E+ + V + Sbjct: 119 NDMFVEVQPPEMRRADAFMVVGLSTPCSLENNSTIPALWQRFN--LRESEVEEVVSGAAY 176 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTV 115 GV A + G+ EL YAV H G + D+ TV Sbjct: 177 GVC---SAADEAGNCTYLAGV----KALTKTPGMDYIELPAQSYAVFTHNGHISDLPRTV 229 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + I LP +G K +P Y + R ++++P+ Sbjct: 230 YTIWNKALPEAGLKTADSPDFERY-DQRFNPETGRGSVEIWIPV 272 >UniRef50_A8FC61 Possible DNA gyrase inhibitor n=2 Tax=Bacillus pumilus RepID=A8FC61_BACP2 Length = 149 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSPV-NQSQTFGVAWDDP 62 ++ I ++ + + ++ + +F W + L+ + +GV DDP Sbjct: 1 MNYKIEIVSNMKMVYMRNKGPYGSKENVEMMKRFKQWINQHQLNDELKEYGIYGVPQDDP 60 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 PE R+D+ + V + GG+YAV + ++ + Sbjct: 61 GKITPEKCRYDLMLMTNRDF-SKDQMVQTRHVEGGKYAVFTVTHTTEKVNLFWSQL-PQM 118 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + MR A I+ Y E+ + +P+ Sbjct: 119 IQNNQLNMRPASIMERYR-------EEEGMCEFLLPI 148 >UniRef50_UPI0001B9EE80 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EE80 Length = 285 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 19/163 (11%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPV---------NQSQTFG 56 ++ I + + V + S + V G+ G Sbjct: 128 MNYRIEEMKAFSVVGFKKQVSTQRAYEEVPFLWKDAHAEGIFDKLWNYRAHEHPIRGILG 187 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 V D E F + + + + +AV G+ I+ Sbjct: 188 VCADG-DYGKNEYFDYIMSVV---STHNPPEPMVLRHFPAAAWAVFELEGDPKGIAEMWK 243 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + W+P+ + P + Y + ++++P+ Sbjct: 244 RLYTEWIPSHAYDLAPLPAIECYL------PPDEYKNELWIPV 280 >UniRef50_A5FHW5 Transcription activator, effector binding n=2 Tax=Flavobacteriaceae RepID=A5FHW5_FLAJ1 Length = 160 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 14/162 (8%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSPVNQSQTFGVA-WDDP 62 ++ I + S + F+ RK + + + V D Sbjct: 1 MEARIETLSEKKLIGKHIEMSFIENKTFELWSSFMPSRKNIKNTIDDNLYSLEVYTLDHF 60 Query: 63 ATTAPEA-FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 P F+ V + + + + G YAV H G + T I Sbjct: 61 DNFDPSKTFQKWAAVEV-QNLDTIPENLETLIVPDGLYAVFVHYGPASEAHKTYHPIFTE 119 Query: 122 WLPASGEKMRKAPILFH----YTNLAEGVTEQRLETDVYVPL 159 WLP S + P Y E ++++P+ Sbjct: 120 WLPNSKYTVDNRPHFAVMDHKYKKDDPDSEE-----EIWIPI 156 >UniRef50_A9I8N6 Possible AraC-family transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8N6_BORPD Length = 291 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 3/152 (1%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + + P + + F S + FG+ +D P Sbjct: 140 VTVRELPPTRFWAVRYEGMSSQKYACWNDFRR-LFAHLRSDLLTGPFFGLTYDTPMFVPT 198 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 R+ V L GGR A+ D + ++ WLP SG Sbjct: 199 PFMRYYCGVQVPPGFGPKPKDAFEITLPGGRIAMCEAHCTADGLPALYANLLDQWLPRSG 258 Query: 128 EKMRKAPILFHYTNLAEGVT--EQRLETDVYV 157 +R + + +R++ + ++ Sbjct: 259 YSLRASCFAERFETFPTNWEFNPRRVQLNCWI 290 >UniRef50_UPI0001C41F50 transcriptional regulator n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F50 Length = 155 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 61/156 (39%), Gaps = 6/156 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 +++ VA++ ++ + + ++K W + + V F + +++P T Sbjct: 1 MEIQEKTIEDQKVAIMNYKGYLKDMEILISKLTGWIELEEIETVGD--LFAIFYNNPRTA 58 Query: 66 APEAFRFDICGSVSEPIPDNR-YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 + +D+ ++ + + + + + H G +D+I T I+ + Sbjct: 59 KEDEVVYDVGIPINPELDPDETEEIRIVTIIEHKVLSGLHYGSIDNIQETYN-IMAEYSI 117 Query: 125 ASGEKMRKAPILFHYTNLAEGV-TEQRLETDVYVPL 159 + + +P Y V E+ + T++ +P+ Sbjct: 118 ENKYDIIGSPK-EVYIKSKFDVEDEEDMITEIQLPV 152 >UniRef50_C6J7H0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7H0_9BACL Length = 301 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPEL------LNYSVAKFIMWRKETGLSPV-NQSQTF 55 + I P+ + + + E + K++ + + + + + Sbjct: 132 EYVMQYRIEQIPAKRILGFAIQTTTEDGQNHKDIPAFWQKYMHEQWGSRVPGKLHPNVEL 191 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARH--VGELD---D 110 GV A FR+ I V E + + G++ + YA+ GE D Sbjct: 192 GVC---TALDEDGTFRYIIGFEVDE-TTEVQEGLTEYRVPAQTYAIFTTPPAGEADFSSS 247 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I T I W P SG + AP Y ++ + D+Y+P+ Sbjct: 248 IQQTWDEIFTSWFPTSGYEQVAAPDFEWY--DERCWPKEGKQIDIYIPV 294 >UniRef50_Q9K766 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9K766_BACHD Length = 297 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 19/167 (11%) Query: 6 LDVNIIDFPSIPVAM--LPHRCSPELLNYSVAKFIMWRKETGL-----SPVNQSQTFGVA 58 ++ + P+ + L + + N + +F + L +P+++ G+ Sbjct: 130 MEPKFVTKPAFHIIGYELKTKNADGQNNKDIPEFWQHYLKNKLGCTIPNPLHKHVELGIC 189 Query: 59 WD-DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-----IS 112 + +P F + I V + G+ YAV ++ I Sbjct: 190 TEFNPE---TGEFVYVIGMEVEKGTKA-PEGMVYKSFPELEYAVFTTPKANEESFTSSIQ 245 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I W P S + Y G + +E D+Y+P+ Sbjct: 246 STWNYIFTEWFPQSDYEHNGVVEFELYDERCHGT--ENIEMDIYIPV 290 >UniRef50_A9KRS9 Transcription activator effector binding n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRS9_CLOPH Length = 160 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 17/163 (10%) Query: 6 LDVNIIDFPSIPVAMLPH------RCSPELLNYSVAKFI---MWRKETGLSPVNQSQTFG 56 + I +A + R + +L+ +F K ++ Q +G Sbjct: 1 MKYRIEKMDGFRLAGISREITINNRENFKLIPKMWEEFNSDGTCDKIVNINGRKQEAMYG 60 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 V +D A E FR+ I + G E+ + G + I T Sbjct: 61 VCYD--FHFAEERFRYMIAI---KSEDQIAEGYEVLEVPEFTWVKFECNG-VTGIQETFK 114 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + W SG + + P + Y V +V+VP+ Sbjct: 115 RMNTEWFLTSGYEHEEGPEIEFYP--IGDVDAPDYVCEVWVPI 155 >UniRef50_B8HE83 Transcriptional regulator, AraC family n=4 Tax=Actinomycetales RepID=B8HE83_ARTCA Length = 288 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 13/167 (7%) Query: 3 NLTLDVNIIDFPSIPVAM------LPHRCSPELLNYSVAKF--IMWRKETGLSPVNQSQT 54 N T+D I D P+ + L H+ + +A + L + Sbjct: 122 NTTMDTRIADRPAFRLVGHAARVPLIHQGPNPHIQAHIASLPAAEHARLKALCNTEPAGL 181 Query: 55 FGVAWD-DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDIS 112 V+ D DP + +VSE P + E+ G +AV R G + Sbjct: 182 LQVSADVDPDYAEGSDLTYLHGVAVSEGTP-VPEDLDAIEVPAGAWAVFRTSGAYPAALQ 240 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T HW P++ ++R P + + A+ + T++++P+ Sbjct: 241 STWAATAAHWFPSNPWRLRPGPSVVAILDRADDFSTAT--TELWLPV 285 >UniRef50_Q9K6U2 BH3633 protein n=1 Tax=Bacillus halodurans RepID=Q9K6U2_BACHD Length = 160 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 12/162 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCSP---ELLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 TN L I++ + L + F E V +FG+ Sbjct: 3 TNELLPFTIVEQNERKMIGLKLEGPYTRMNEIGMLWETFNQRVSEIDHL-VQDDLSFGIV 61 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 D F + VS G++ L RYAV H G D S TV Sbjct: 62 QD-----RERDFTYYAAVEVSS-FTKVPEGMATIILPACRYAVFTHKGPQDKFSETVVAA 115 Query: 119 IRHWLPASGEKMR-KAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ L SG + L Y + E D+Y PL Sbjct: 116 LKS-LKESGYEKDSDNYWLEGYDDHRFSPELDNSECDIYFPL 156 >UniRef50_C3JZ42 Putative AraC family transcriptional regulator n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3JZ42_PSEFS Length = 170 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 12/162 (7%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCS---PELLNYSVAKFIMWRKETGLSPVNQSQTFGVA 58 T L+ + ++ +A + R S + F K+ + T+GV Sbjct: 15 TKQPLEPRMEAGKALVIAGVQGRYSKATVGDIPKLWELFDTCIKD--IKKRVGGVTYGVC 72 Query: 59 WDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGI 118 +P F + V D + E+ YAV H G + + T I Sbjct: 73 H-NPKH---GEFDYMAGVEVPTKG-DVPSNFESIEIPPLNYAVFPHYGPVQALEQTYERI 127 Query: 119 IRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 + WLP SG K+ A Y+ + ++++P+ Sbjct: 128 MFEWLPHSGYKVMGA-DFERYSADF-DGRKGTGTVEIWLPVG 167 >UniRef50_B7VRB4 Transcription activator n=6 Tax=Vibrionales RepID=B7VRB4_VIBSL Length = 290 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 19/168 (11%) Query: 7 DVNIIDFPSIPVAMLPHRCS---------PELLNYSVAKFIMWRKETGLSPVNQSQTFGV 57 +V I + V + S + + ++ + + N Q GV Sbjct: 124 EVRIDEREPFLVKGMTSEISGLFSLTQDFAQKVPQLWSRLEGEVE---IPDANMLQFIGV 180 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIPDNR------YGVSNGELTGGRYAVARHVGELDDI 111 + + + + I + + + YAV +H G ++ + Sbjct: 181 VDLTQSCFDGTNIYYWAGVELHDEISIPQLPSIISDKLEVLTIPKQTYAVVKHRGPIEHL 240 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 HT+ + +WLP SG + L Y + E + +VP+ Sbjct: 241 PHTLSWFVLNWLPNSGYRGVDGYELEMYPFGYQAHA-SDAEMEYWVPI 287 >UniRef50_Q18AY3 AraC-family transcriptional regulator n=15 Tax=Bacteria RepID=Q18AY3_CLOD6 Length = 288 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 21/169 (12%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETG-------LSPVNQSQ 53 N+ + I++ + + + E V K + G L Sbjct: 125 NIEMQYRIVEKKGFRIVGIKESMNMIVEECFEKVPKLWAKCIKNGTIDKLSELINNEPCG 184 Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD--- 110 GV+ T + + I +P+ ++ + G +AV V + + Sbjct: 185 LLGVS----VCTNSKGLDYYIAAPTDKPVLEDT---HEYLIPSGTWAVFECVSPMPNALA 237 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I II WLP+SG P + Y N T+V++P+ Sbjct: 238 IQELQKRIITEWLPSSGYVYANLPDIELYPNGDINAP--DYTTEVWIPI 284 >UniRef50_C0CY04 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0CY04_9CLOT Length = 295 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 10/159 (6%) Query: 7 DVNIIDF-PSIPVAMLPHRCSPEL--LNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 I+ I +A L S + +F + G + + Sbjct: 140 SPEILQMTEEIKIAGLRDITSISQNRIPQLWDQF---LRFHGDLYELTETAYSICETRQT 196 Query: 64 TTAPEA---FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 A + F + V + + ++ L G+YAV H G L+ + T I Sbjct: 197 AYAEDGDVTFSVMVGSPVPD-FSNLPETLAQTTLRPGKYAVFTHRGSLEKLLQTYQYIYG 255 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP+SG+++ Y + + E +Y+P+ Sbjct: 256 TWLPSSGQRLDDRDDFEVYERKVLAMQDPENEVKLYIPV 294 >UniRef50_C5RP62 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RP62_CLOCL Length = 292 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 51/170 (30%), Gaps = 20/170 (11%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS------PELLNYSVAKFIMWRKETGLSPVNQSQTFG 56 + ++ II+ + + + + AK I + G Sbjct: 125 DKEMNYKIIEKEPFKIFGKDFKTNIIGGRCFSEIPEFYAKCISDGTSAKIIRNAGKPENG 184 Query: 57 V------AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVG-ELD 109 + +P + R+ I V++ + E+ +A+ + Sbjct: 185 ILDVGVLFNHNPQ---DGSMRYMIGCDVTDTNTNILTEFRILEIPSLTWAIFEVENNSDE 241 Query: 110 DISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 DI I W PAS + AP + Y + ++++P+ Sbjct: 242 DIHEMWRRIGSEWFPASSYEHADAPEMERYYGN----NDTGCRCEIWIPV 287 >UniRef50_A6D8X3 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D8X3_9VIBR Length = 295 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 19/163 (11%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYS-----------VAKFIMWRKETGLSPVNQSQTFG 56 V I P + + + + F + ++P +G Sbjct: 138 VRIESKPETQFWGV--YGPIDSIYAANPQFSQQVLDIWGTFTQIALQHSIAP--NHFYYG 193 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVW 116 + D + P + + + YAV HVG T+ Sbjct: 194 IV-DTVRVLPNSQLVYWAAS--DNPAFSQISQLEHVTIPAQMYAVITHVGPAATFPKTLE 250 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +++ WLP+SG + L Y + + + ++P+ Sbjct: 251 WVLQSWLPSSGYMGLEGFELECYPRDY-QLESHEAKMEFWLPI 292 >UniRef50_A8MJ72 Transcriptional regulator, AraC family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MJ72_ALKOO Length = 302 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 18/171 (10%) Query: 4 LTLDVNIIDFPSIPVAM------LPHRCSPELLNYSVAKFIMWRKETGLSP---VNQSQT 54 + ++ II S + L + + + + KE L + Sbjct: 127 IIMEPKIIQRDSFKIVGYEFKTTLRNNAHSRDIPAFWDQCNIEGKEAKLYETQFPPRHGE 186 Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARH-----VGELD 109 +G+ + + F + + V + ++ YAV +D Sbjct: 187 YGICVN--TNMETDEFSYILGVEV-LSFDHAMIDMYTLDVPAATYAVFTTPSVEDHDFVD 243 Query: 110 DISHTVWGIIRHWLPASGEKMRKAP-ILFHYTNLAEGVTEQRLETDVYVPL 159 I T I+ W P SG ++ Y + ++YVP+ Sbjct: 244 SIQGTWNYILEEWFPNSGYEIDDTKLDFEFYDERCHPWEYSKFSMEIYVPI 294 >UniRef50_B2TL55 Transcriptional regulator, AraC/XylS family n=2 Tax=Clostridium botulinum RepID=B2TL55_CLOBB Length = 282 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 16/165 (9%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRC------SPELLNYSVAKFIMWRKETGL-SPVNQSQTF 55 + ++ I++ S V R + E + + + S V + Sbjct: 124 DKDMNYKIVEKESFRVVGKQTRITMVDGENFEQVPEFWNNCMKDGSYNWICSKVGKLGVL 183 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHT 114 G+ D + F + I E G + + +A+ G D I Sbjct: 184 GICKDF----GKDEFNYMIGVE--EIKDSIPKGYVSATIPAATWAIFESSGALPDAIQDL 237 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLP++G + AP L Y + + ++++P+ Sbjct: 238 TRRIFTEWLPSTGYEHACAPELEIYPEG--DIYSSDYKCEIWIPI 280 >UniRef50_A9KRP2 Transcriptional regulator, AraC family n=7 Tax=Bacteria RepID=A9KRP2_CLOPH Length = 292 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 31/171 (18%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPEL----LNYSVA---------KFIMWRKETGLSPVNQS 52 ++ I+ FP+ V + +R + + +FI K+T P Sbjct: 128 MNYQIVQFPAFKVVGITNRINTSEAFKIVPQIWENAWKDGTMNRFIELLKKTDYRPAG-- 185 Query: 53 QTFGVAWDDPATTAPEAFRFDICGSVSEPIPD-----NRYGVSNGELTGGRYAVARHVGE 107 G+ D E + + + +P+ G+ + V GE Sbjct: 186 -FLGICADG-KWGNSEEMDYILAITNHVDVPECNYVSPPDGMKEFCYPASTWVVFDADGE 243 Query: 108 -LDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + WLP SG ++ P++ Y +V++ Sbjct: 244 LPSAVQKIHKQFYSEWLPNSGYELADLPVIESYMQNNHQ--------EVWI 286 >UniRef50_A3XLX8 Probable transcription regulator, MerR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLX8_9FLAO Length = 161 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 6/159 (3%) Query: 6 LDVNIIDFPSIPVAM--LPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVA---WD 60 + I++ + + S + F+ KE + + V + Sbjct: 1 MKPEILEIEPRKIIGKCVTTTLSFDDTAALWQDFMSRHKEIKNCVDSGFYSMQVYPSGFK 60 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 T F V++ G+ + GG YAV HVG + + T I Sbjct: 61 VEEFTRETEFERWAAVEVTD-FDTVPEGMQTKTIAGGLYAVFTHVGPVKEFVETSNYIYG 119 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG K+ K G E ++++P+ Sbjct: 120 TWLPQSGYKLDKRAHFERLGEKYYGPEHPESEEEIWLPI 158 >UniRef50_Q11SS0 Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11SS0_CYTH3 Length = 163 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 16/163 (9%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELL--NYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ I + + S F+ ++ ++ + + + + Sbjct: 1 MESRIEILSPKKLIGMRMSMSFADNKTGILWKNFMS--RKHEVTHTAGTDLYSIQFYAAG 58 Query: 64 TTAPEAFR--FDICGSVS-EPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 + R FD C S+ + G+ EL G Y V + G+ + + I+ Sbjct: 59 FFSAFNPRAHFDKCASIEVTSMEAIPEGMEYIELPAGLYVVFLYKGDARNAAAVFQYILG 118 Query: 121 HWLPASGEKMRKAPILFH----YTNLAEGVTEQRLETDVYVPL 159 WLPAS ++ P Y E ++++P+ Sbjct: 119 TWLPASPYELDIRPHFEVLGETYKKDDPDSEE-----EIWIPV 156 >UniRef50_A2TVN7 Transcriptional regulator, putative n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TVN7_9FLAO Length = 165 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 10/157 (6%) Query: 10 IIDFPSIPVAML--PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGV--AWDDPA-- 63 I++ + + L + F R+ + + ++ V DD Sbjct: 11 IVEQRELILVGLQATMSLAHNTTMQLWQAFGPLRRT--ILNKSNRGSYSVQCYADDFMTT 68 Query: 64 -TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 T F +V+ D + ++ G++AV + G D I W Sbjct: 69 PFTPETKFVKWAAVAVTTE-NDIPNQLEVLKIPKGKWAVFPYKGTTRDFGVFAQYIYSQW 127 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 LP SG ++ P G + E +V++P+ Sbjct: 128 LPNSGYQLDDRPHYEFMPEDYLGPNNPQSEEEVWIPI 164 >UniRef50_A0KJN2 Transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KJN2_AERHH Length = 325 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 7 DVNIIDFPSIPVAMLPH--RCSPE---LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 V I P + + R +V + G P Q + GV Sbjct: 171 QVRIESPPGFILQGVKGQIRGLFAAAPDFQQTVPAIWRALRTAGGLPPGQER-VGVV--- 226 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121 + A E+ + SV E G++ + YAV HVG + + T+ I+H Sbjct: 227 DVSGAGESLPYWAG-SVMEEGASLPAGLARLPVPAQTYAVLSHVGPVSQLGQTLNWFIQH 285 Query: 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 WLP+SG + L Y +G + ++P+A Sbjct: 286 WLPSSGYRGLDGFELERYAPDFDGNQP-DARMEYWLPVA 323 >UniRef50_UPI0001C36EC6 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36EC6 Length = 292 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 14/166 (8%) Query: 5 TLDVNIIDFPSIPVAMLP--HRCS-----PELLNYSVAKFIMWRKETGLSPVNQSQ--TF 55 T++ II+ P+ V HR + AK L + + + Sbjct: 127 TMNYRIIEKPAFTVIEKAEVHRLDENDVVSSTVPDVWAKAGADGTIAQLVGMASDREFIY 186 Query: 56 GVAWDDPATT-APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISH 113 G+ + + T + F + I +E G + + G + + Sbjct: 187 GICYGNGKETYDEDTFEYSIAAICAEDTVA-PEGFRISHIPARTWLAVECQGTCPETVQQ 245 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + + P+SG + Y + + +++VP+ Sbjct: 246 QWREMCASFFPSSGYTPTYEMDIEVYPSGDPSAP--DYKFEIWVPV 289 >UniRef50_O87252 Positive transcriptional activator n=1 Tax=Lactococcus lactis RepID=O87252_9LACT Length = 265 Score = 88.8 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 17/166 (10%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYS-----VAKFIMWRKETGLSPVN----QSQT 54 + ++ I + P + + + + + +F + + Sbjct: 103 IQMNYLITNKPEMMITGIKESYPNITVGQASIPKFWDRFNESDLFNQVINEKSEHSPNTI 162 Query: 55 FGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISH 113 G+ EA+ + I E + L +AV + VG+ + I Sbjct: 163 LGICL----PREGEAYDYFIGVYTDEKTTA--DKLETITLPASDWAVFKAVGKVPEAIHQ 216 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I + P++ +KAP Y ++E T++++P+ Sbjct: 217 TYQDIYESFFPSTTYTQKKAPDFESYPLDLNPMSEN-HITEIWIPI 261 >UniRef50_D2NR94 Uncharacterized protein conserved in archaea n=2 Tax=Rothia mucilaginosa RepID=D2NR94_9MICC Length = 165 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 6/154 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 + I + P++ VA + + + L + +Q GV Sbjct: 13 EPRIEEHPAMVVAGVSQVFPLDGDFSSLWDELNQKASPAMLDVLKVTQYLGVC---TQPN 69 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 R+ VSEP + G+ EL YAV G + + + A Sbjct: 70 PKGQVRYTAGFLVSEPASAAKLGLGVLELPASTYAVVEVTGPISESIPAGFASFEEAFFA 129 Query: 126 SGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + R L Y + +++VPL Sbjct: 130 KNPQYRPVGGLEVY--GRGDMQAADYRMELWVPL 161 >UniRef50_B8DCJ4 Transcriptional regulator, AraC/XylS family n=19 Tax=Listeria RepID=B8DCJ4_LISMH Length = 159 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 21/165 (12%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLN--YSVAKFIMWRKETGLSP--------VNQSQTF 55 ++V I++ + S E +++F G + Sbjct: 1 MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDAERINELAEFATIDGIL 60 Query: 56 GVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHT 114 GV + + I + + ++A+ + VG + I Sbjct: 61 GVC-----QMNGDKMDYYIAIESE---LTPPEDMEKLTIPASKWAIFKSVGPLPNAIQKV 112 Query: 115 VWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I W S AP L YT T ++V++P+ Sbjct: 113 WEYIYGEWFQTSNYTHGNAPELEVYTEG--DTTAADYYSEVWIPV 155 >UniRef50_C5EUL1 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EUL1_9FIRM Length = 266 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 13/156 (8%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 ++ + + +A + S E K L + D Sbjct: 121 NYEIVVKEAGEQVLATHRQKMSVEEFGTYYGKIYEKIAREHL--EVNGIVMAIYHDQEFD 178 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 A + + + L G A H G + I+ W+ Sbjct: 179 PAFSDIELGVGITERDKAD--------FILPGHLCATTIHKGAYSGLPDAYGAIVA-WIN 229 Query: 125 ASGEKMRKAPILFHYTNLAEG-VTEQRLETDVYVPL 159 A+G KM P Y + + T+++ P+ Sbjct: 230 ANGYKMDGMP-YEIYLKTHFDKLPPEEWVTEIFFPV 264 >UniRef50_C0CKN8 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKN8_9FIRM Length = 167 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 11/152 (7%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNY-SVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 I +F + +A + N + F ++ L N S G+A D+PA T Sbjct: 23 KIEEFKDVTIAYMRRTGDYGFKNKILMENFKEHLRKENLLNSN-SIILGIALDNPADTDR 81 Query: 68 EAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASG 127 + R+D+ VS + ++ G YAV D++ I L Sbjct: 82 DKLRYDVGLIVSGE---PNTALDIRKIPDGMYAVFELPHTEQDVAAFWSNI--EQLVGDL 136 Query: 128 EKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + P++ Y+ + + +PL Sbjct: 137 TVDKAKPMIERYSAD----KVAKHLCEFCIPL 164 >UniRef50_C6Q1C5 Transcriptional regulator, MerR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q1C5_9CLOT Length = 278 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 11/159 (6%) Query: 6 LDVNIIDFPSIPVAMLPHRCSP--ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD--- 60 + I + P VA + + E K I + + + V +D Sbjct: 125 FKIEIKEIPVSYVAYIRSKGPCTIEEFAVRYCKLISLVERNNFHIIKNA--MAVYYDNCI 182 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 D E + ++C +SE + + G + A H G D++ + + + Sbjct: 183 DFEEKEKEDYDIEVCIVISEEREIDGL---VRKFGGFKAVTAVHYGSYDNMIDSYRKLYK 239 Query: 121 HWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ +G ++ PI + ++ V E+ T++ +P+ Sbjct: 240 -YIYENGYEICGEPIDNYLVDIMNTVDEENYVTELIIPI 277 >UniRef50_B1QW88 Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=B1QW88_CLOBU Length = 274 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 11/160 (6%) Query: 7 DVNIIDFPSIPVAMLPH---RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPA 63 ++ + ++ +A + + +C E + + ++ + + Sbjct: 120 EITVKRVEAVLIASIRNIINKCDFEECDKMWTSINSFIDKSE--TKRTIPCMILFHNSTW 177 Query: 64 TTAP-EAFRFDICGSVSEPIPDNRYGVSNGELTG-GRYAVARHVGELDDISHTVWGIIRH 121 E++ ++ V++ + DN EL + A H G + I T I Sbjct: 178 NYETSESWDIEVAEPVTKRVDDN-KIFKVYELPAVDKMACVVHQGSFNTIGETYKAIYN- 235 Query: 122 WLPASGEKMRKAPILFHYTNL-AEGVTEQRLETDVYVPLA 160 W+ + K+ P+ Y E + T++ PL+ Sbjct: 236 WIEKNNYKI-DGPVREIYHKGEWETNNPEEYVTEIQFPLS 274 >UniRef50_B9CPS5 Positive transcriptional activator n=3 Tax=Staphylococcus RepID=B9CPS5_STACP Length = 165 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 18/168 (10%) Query: 1 MTNLTLDVNIIDFPSIPVAM-LPHRCS----PELLNYSVAKFIMWRKETGLSPVNQSQ-- 53 M + +D I + S V H S + + + L + +Q Sbjct: 6 MGEMNMDYRIENIESTKVIGAYRHYKSGGHAQSNIPDFWEDVHTMKLDERLLQKSDNQLN 65 Query: 54 -TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDI 111 GV E D V+ D G+ L GG+Y V G + Sbjct: 66 GLLGVCL------PKEDRTMDYAIGVTS-TEDPHDGLETFNLEGGKYLVVEAKGPVPKSV 118 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T+ I +P ++++AP Y + T++++P+ Sbjct: 119 QQTMNDIHHELIPRENIEIKQAPFFELY--GPGDTQSESYVTEIWMPI 164 >UniRef50_D0LVM9 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVM9_HALO1 Length = 301 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 44/161 (27%), Gaps = 14/161 (8%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELL----NYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + D+ ++ + R + + + G++ Sbjct: 148 MNYDITQQSIDAMTILSKTARVEQAEIASVLGQILPAIFTHATQNGIAM--TGPPIVRYH 205 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 P + V E G+ + AVA H G D + I Sbjct: 206 ----AWGPGMVTLEGGIPVVEGATGAD-GIEYVRIEPCTAAVAIHTGPYDGLGDAHAAI- 259 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVT-EQRLETDVYVPL 159 ++ +G ++ AP Y V + +T V P+ Sbjct: 260 ERYVHENGLQVAGAP-FEVYLTDPGEVPNPEEWKTRVCWPI 299 >UniRef50_B7HW35 Transcriptional regulator, AraC family n=34 Tax=Firmicutes RepID=B7HW35_BACC7 Length = 281 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 27/169 (15%) Query: 3 NLTLDVNIIDFP-SIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPV-----------N 50 + ++ I + + + + K+ G Sbjct: 125 DTEMEYRIENLDFELRIVGKSKSVKTSSAFKKIPTLWNNAKKDGFMQELIDMSWEDPKCK 184 Query: 51 QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD 110 GV D A T E F + + +P + + + +AV + Sbjct: 185 LESLLGVCGKDAAITD-EEFSYFMGVRYDGEVPTD---METLVIPVSTWAVF------PN 234 Query: 111 ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I + W+P S ++ P + Y + + +++VP+ Sbjct: 235 IVDAWKRLYSEWVPTSKYELANLPCIECYYG-----PKHKPRHELWVPV 278 >UniRef50_C3RJJ6 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RJJ6_9MOLU Length = 272 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 10/154 (6%) Query: 9 NIIDFPSIPVAMLPHRC--SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 + + P I +A + + ++ ++ L P+ +DD Sbjct: 123 QLKEIPEIYIAYVRQQGLADQAAFMRRFSELNTLCRKNNLEPIGN--IMARYYDDYQQYD 180 Query: 67 PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPAS 126 P+ DI S+ + GV E G A H G D T ++ W+ + Sbjct: 181 PDC--ADIEVSIQIDLNHEIGGVVRKE-PGYLCVSALHYGSYRDEYKTYT-LMMEWMKKN 236 Query: 127 GEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPL 159 M P L +Y E T++ +P+ Sbjct: 237 NLVMCG-PALEYYLIDPIFTNDENEFVTELRIPV 269 >UniRef50_C6CRA3 Transcriptional regulator, AraC family n=8 Tax=Bacillales RepID=C6CRA3_PAESJ Length = 297 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 15/164 (9%) Query: 4 LTLDVNIIDFPSIPVAM------LPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQT-FG 56 +II+ P+ + L + E + A F + + +G Sbjct: 140 TMYKPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFGNHEYFMRIPNKARPAFAYG 199 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDI-SHTV 115 + AF F I V+ + G + EL G+YA R G + +I + Sbjct: 200 IPH---GYGEDGAFSFLIGEEVTS-FAEVEEGFACLELPSGKYAAFR-NGTMPEIGQNAW 254 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLP S + + P T Q++ +Y+P+ Sbjct: 255 KYIYGTWLPNSNYERGEGPDFEV--TDVLNSTPQKISMTIYIPI 296 >UniRef50_Q0YQP0 Transcription activator, effector binding n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YQP0_9CHLB Length = 161 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 13/150 (8%) Query: 15 SIPVAMLP----HRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAF 70 + + L + S + F + + S +GV Sbjct: 14 PMLLGGLRCYHLYTESSRSIPEQWEAFRALGR---IPGQTGSAFYGVMCGH----DAGGI 66 Query: 71 RFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKM 130 + V + + + YAV H G++ I T I+ W P G + Sbjct: 67 EYLCGVEV-DSFAGLPSELGRMRILEEEYAVFGHSGQISTIRTTWERILHEWFPNGGYRS 125 Query: 131 RKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 P Y + + ++++ ++ Sbjct: 126 ANKPDFEVY-DQRFDTRTGSGDVEIWIAIS 154 >UniRef50_C9NSU9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSU9_9VIBR Length = 310 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 10/138 (7%) Query: 28 ELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPI----- 82 + + + + PV + + + +++ + Sbjct: 172 QKVPALWHRLEQTLPDEPERPVALTGVIDITQSHF---DGSNMEYWAGVELTDDLLLPQL 228 Query: 83 -PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTN 141 +S + YAV +H G + + T+ + +WLP SG + L Y Sbjct: 229 PSAISSELSTLVVPAQTYAVVKHCGPVVHLPKTLEWFLLNWLPNSGYRGIDGYELECYPA 288 Query: 142 LAEGVTEQRLETDVYVPL 159 + + ++P+ Sbjct: 289 NYNQH-DTDAVMEYWIPV 305 >UniRef50_B8D1P7 Transcription activator effector binding n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1P7_HALOH Length = 231 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 6/155 (3%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 +V I++ + VA + W K+ L + ++ FG +D+P+ T Sbjct: 79 EVRIVELKPVWVASYRAEAE-SPEPRAWEVIFKWAKKYNLLQLPGTRFFG--FDNPSPTP 135 Query: 67 PEA-FRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 +A + ++ ++ + + + +GG YAV D+ + + W+ Sbjct: 136 DKAVYGYEFWVTIPHKNFNIPEEMKIRKFSGGLYAVTNTNFREFDVGERWKQLYK-WVKE 194 Query: 126 SGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 S R+ L + + ++ D+Y P+ Sbjct: 195 SEFSYREGICLEEHITLTGYNLDINTVQLDLYEPI 229 >UniRef50_A3VB55 Transcriptional regulator, putative n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VB55_9RHOB Length = 157 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 14/156 (8%) Query: 10 IIDFPSIPVAMLPHRCSPE-----LLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 I++ + + L + +F G+ +G++ Sbjct: 9 IVESRAKLIIGL--VGDYSLDTRGEIPKLYEQFF--AIRDGIKHRVSDVLYGISM---GA 61 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 +FR+ + V E D G L G Y V + ++ + WLP Sbjct: 62 KPDGSFRYGVGIEVEEA-EDLPEGACEMHLVDGEYVVFSQRTPIAELPARFDAVFAEWLP 120 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 S R+ + Y + + + ++ +++VP+A Sbjct: 121 QSDFVQREGAVFECYPDD-DSPEDGKMLYEIWVPVA 155 >UniRef50_B3QQQ3 Transcription activator effector binding n=3 Tax=Chlorobiaceae RepID=B3QQQ3_CHLP8 Length = 158 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 51/153 (33%), Gaps = 13/153 (8%) Query: 9 NIIDFPSIPVAMLPHRCSPELLNYSV----AKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 + + +P ++ R + + + + G P + +F +D Sbjct: 10 ELKELAPVPAIVIRTRVAVSEIGPLFDSGFREIRQVLESQGKQP--SAPSFARYYD---- 63 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 + + + V + + VS G+ A ++G +I +++ W+ Sbjct: 64 MSEGSLDVEFGYPVDGNVQVSGRVVSAST-PSGKAATCLYIGPYSEIEPAYSALMK-WIA 121 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 + +M Y + ++L T +++ Sbjct: 122 ENSLEMNGE-AYEIYLDDPFETPPEKLRTQIHL 153 >UniRef50_B9QWG5 Bacterial transcription activator, effector binding domain, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWG5_9RHOB Length = 133 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 9/138 (6%) Query: 26 SPELLNYSVAKFIM--WRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSV-SEPI 82 P + ++ K W + V + T PE F SV + Sbjct: 2 DPADIGTTMGKIFQSVWAFIQKNRIETSGKVLAVYY----TYNPETMTFRAGFSVSPDAA 57 Query: 83 PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNL 142 + G+ +H G + + ++ W+ M AP Y N Sbjct: 58 NKGEAPIQFDRTPAGKVVYFQHKGAYSTLRDSYGEMMS-WMEKERLTM-GAPAWEVYLND 115 Query: 143 AEGVTEQRLETDVYVPLA 160 E L TDVYV L+ Sbjct: 116 PATTPEDALLTDVYVSLS 133 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 14 PSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRFD 73 P+ V H+ + L S + + W ++ L+ + + V +DPATT +A D Sbjct: 70 PAGKVVYFQHKGAYSTLRDSYGEMMSWMEKERLTM--GAPAWEVYLNDPATTPEDALLTD 127 Query: 74 ICGSVS 79 + S+S Sbjct: 128 VYVSLS 133 >UniRef50_B7GST4 Transcription activator, effector binding n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GST4_BIFLI Length = 286 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 8/156 (5%) Query: 8 VNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD-PAT 64 II VA L S L +F S +G+ A Sbjct: 134 PKIILLGETEVAGLRGTTSLSDNQLPGLWEQFHGL----NKDFFTTSAGYGICETQKTAY 189 Query: 65 TAPEAFRFDICGS-VSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 T + + + ++ L GRYAV H G L ++ T I WL Sbjct: 190 TKDGDALYSVMIGGPVKDFDCLPLELAKKTLRAGRYAVFTHRGTLGNLYKTYQYIFGTWL 249 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + E++ Y + + E +++P+ Sbjct: 250 QTTREELDDREDFEVYEHEILSFDDPDNEVKIFIPI 285 >UniRef50_Q24TQ4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=Q24TQ4_DESHY Length = 305 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 19/168 (11%) Query: 5 TLDVNIIDFPSIPVAMLPHRC-------SPELLNYSVAKF-----IMWRKETGLSPVNQS 52 T+D I + + + + E ++ + + + G Sbjct: 140 TMDYRIEKKDAFKIICKKKQVNKPQGDSATEEISAFWNQCTKDGTMEDICKYGRFD-GLG 198 Query: 53 QTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-I 111 G+ + A AF + I + +P + G+ E+ +AV + G + + Sbjct: 199 GVLGICFS--GDMADAAFPYGIGAEYNG-VPLHGEGLEILEIPPYTFAVFQCKGPMPEVF 255 Query: 112 SHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I+ + P S + L Y + V+ ++++ + Sbjct: 256 KTTYQRIVTEFFPQSNYQYGNGVELEVYPS--ADVSNPEYTCEIWIAV 301 >UniRef50_D1AKN1 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN1_SEBTE Length = 155 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%) Query: 6 LDVNIIDFPSIPVAMLPHR--CS--PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61 + I + P I + + L + +F K G ++G++ D+ Sbjct: 1 MKAVIKELPEITIYGKKTKDVGPKTVGDLPKAWGEFFEAAK--GKFNPEHMNSYGLS-DN 57 Query: 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL--DDISHTVWGII 119 T E F + I E + G +L +YAV G++ D+IS + I Sbjct: 58 MRMTE-ELFDYTIGME-KESYTEIPEGFEEIKLPANKYAVYTFKGKIEGDNISKFIGDIY 115 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 W+P + +Y ++ E D+YVP+ Sbjct: 116 MKWMPEEKLECIPEYSFEYYDERWIDDSD-ESELDIYVPI 154 >UniRef50_C9XSP3 MerR-family transcriptional regulator n=5 Tax=Clostridiales RepID=C9XSP3_CLODC Length = 270 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 10/162 (6%) Query: 3 NLTL-DVNIIDFPSIPVAMLPH--RCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + + DV I P + VA + + EL N +TG + F + Sbjct: 110 EVNMNDVIIKSLPKVKVASMRKVLKGYDELFNLFPNVMAEEMMKTGCTCAVPDYCFNIYH 169 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVAR-HVGELDDISHTVWGI 118 D ++C ++++ + ++ + EL AV H G + T Sbjct: 170 D--GEYRETDMDVEMCQAIND-LKEDTDILKFKELDAVENAVCILHNGPYSTLGKTYADA 226 Query: 119 IRHWLPASGEKMRKAPILFHYTNL-AEGVTEQRLETDVYVPL 159 + W+ + K+ P Y + +E+ T+V +P+ Sbjct: 227 FK-WIEDNKYKVVGNP-RESYIDGIWNKESEEDWLTEVQIPV 266 >UniRef50_Q0W7J0 Putative bacterial transcription activator n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7J0_UNCMA Length = 153 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 13/160 (8%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPEL----LNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + I + P + R E + + I + E G P F + Sbjct: 1 MPFTCEIKELPVQQALSVRTRSPVENLPNVIGQTYGTIIQYMSELGEQPAGA--PFVAYY 58 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 + +I V+ +P V + GGR + G +I+ + Sbjct: 59 N----MDMTDLDLEIGFPVNRELPGK-GVVQPSRIPGGRTGTCMYTGPYQEIAPAYDAL- 112 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 + G + Y N +L+T + P+ Sbjct: 113 AKLIAEKGLEPTGV-AYEIYYNSPMDTEPSKLQTLILFPI 151 >UniRef50_Q2PJA4 ORF3 n=1 Tax=Enterococcus faecalis RepID=Q2PJA4_ENTFA Length = 164 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 58/163 (35%), Gaps = 12/163 (7%) Query: 6 LDVNIIDFPSIPVAMLPHRCS--PELLNYSVAKFIMWRKETGLSPVN------QSQTFGV 57 +DV +I+ P+I + + + + N ++ + + ++ Q V Sbjct: 1 MDVKLIEKPAIQIVGVCQKVPLQYQGENQAIMELEQRITPQQRAEMHTFDDVYPHQVVNV 60 Query: 58 AWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL-DDISHTVW 116 ++D E + + + + +AV + G + T Sbjct: 61 SFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQETWA 120 Query: 117 GIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 I WLP+SG ++ AP +G E + +++++ + Sbjct: 121 RIFSEWLPSSGYQVVAAP--EISFTQYQGPAEAKY-SEIWLAV 160 >UniRef50_C7IHL6 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHL6_9CLOT Length = 290 Score = 84.9 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 56/177 (31%), Gaps = 33/177 (18%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCS------PELLNYSV---------AKFIMWRKETGLS 47 ++ ++ I + S V + S + + + + + + Sbjct: 125 DVEMNYRIEEKESFSVFGIDTILSKVDGECYKRIPEFWLKSIEDGTVERILKAADDGKQN 184 Query: 48 PVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE 107 + + +G ++ + + +C + + G ++ +A+ Sbjct: 185 MMLNAAMYG--HEN-----DGTYHYMLCHRIPQ--KGIPEGFVQLDIPKLTWAIFPTEEH 235 Query: 108 LDD-----ISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 +D + I W P+SG + AP Y V + + ++++P+ Sbjct: 236 TEDKTSEKVQAIWERIYPEWFPSSGYQHADAPEFEMYYK----VGDNKYIVEIWIPV 288 >UniRef50_A8FAK9 Transcriptional regulator n=3 Tax=Bacillus RepID=A8FAK9_BACP2 Length = 290 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 12/166 (7%) Query: 2 TNLTLD-VNIIDFPSIPVAMLPHRC------SPELLNYSVAKFIMWRKETGLSPV-NQSQ 53 + L ++ I + + ++ + F + Sbjct: 127 SELNMNKPVITQLGNFYIIGYEYQTNLQNEEYFTDIPLFYMDFGKKEYYQQIQKKIAPHM 186 Query: 54 TFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISH 113 +G++ F F + V + + G + G+YA + G + + + Sbjct: 187 AYGISTS---FQDDGHFSFVVGEEVEDFDLELNEGFVKIVIPEGKYAEFKVSGSHEMVQN 243 Query: 114 TVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I WLP S + P T++ ++ +Y+P+ Sbjct: 244 TRRYIYGSWLPNSNYERTSGPDFEI-TDVLHSNGPNDIKMKIYIPI 288 >UniRef50_Q7UJN1 Probable transcription regulator, MerR family n=1 Tax=Rhodopirellula baltica RepID=Q7UJN1_RHOBA Length = 246 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 49/164 (29%), Gaps = 16/164 (9%) Query: 1 MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 M V +A + + + AK + + + D Sbjct: 91 MNQTNYAVEEKSVEPCLIASVRMKGAYSECGKGFAKIG-----RRMGRFINGKPILLQHD 145 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIR 120 F+ C + + + ++ EL GGR H+G ++I + I++ Sbjct: 146 --TEYKENDADFEACMPIKKGQSNEE--ITVKELPGGRALSLMHLGPYEEIGRSYEKIMK 201 Query: 121 HWLPAS-GEKMRKAPILFHYTNLAEGV---TEQRLETDVYVPLA 160 H S + P Y + ++ T++ ++ Sbjct: 202 HAKTQSLSYHL---PTREIYHKGPGMIFKGNPKKYLTEIVFLIS 242 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 7 DVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT- 65 ++ + + P L H E + S K + K LS ++ + P Sbjct: 169 EITVKELPGGRALSLMHLGPYEEIGRSYEKIMKHAKTQSLSYHLPTRE--IYHKGPGMIF 226 Query: 66 --APEAFRFDICGSVSEPI 82 P+ + +I +S+ + Sbjct: 227 KGNPKKYLTEIVFLISDDV 245 >UniRef50_B8I4L9 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I4L9_CLOCE Length = 452 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 9/157 (5%) Query: 10 IIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLS-PVNQSQTFGVAWDDPATTAPE 68 + + VA + + +++ W + GL+ + FG PA+ E Sbjct: 139 LKEMEPTRVAYFCYYGK-QPEHHAFTVMAQWLNKNGLNVNEQNLRIFGYNNPSPASPDEE 197 Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELD-----DISHTVWGIIRHWL 123 + +++C +V++ I N V L GG YAV D +I +WL Sbjct: 198 EYGYEVCATVADNIVVNDDLVKEKVLGGGLYAVTNVRRGQDGDIGGEIIKAWSR-FNNWL 256 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 S L + + D+Y+P+A Sbjct: 257 SDSKYVYGGHQWLEEHL-GFDDNANHIGGIDLYMPIA 292 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 9/149 (6%) Query: 13 FPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFRF 72 + A + + F W G + F +D F + Sbjct: 307 VEPMLTATYTATGKDADV-KARDFFFKWADSQGFFNDTKPHRFFAYYDHERI-GHNDFFY 364 Query: 73 DICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE-KMR 131 I +V + + E GG YA+ + + ++ WL + E + Sbjct: 365 KIHVTVDREFSTDNPYIKLEEFKGGYYAITKAKYSYN--GWAWGEFLK-WLSKNKEFDLG 421 Query: 132 KAPILFHY-TNLAEGVTEQRLETDVYVPL 159 Y N E + + +++P+ Sbjct: 422 NYWFFEEYKLNKPELDMDTEVV--LHMPI 448 >UniRef50_C3RHZ9 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RHZ9_9MOLU Length = 280 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKE------TGLSPVNQSQTFGVAW 59 L I S + + S ELL V W K L +N G+ Sbjct: 128 LSFRIEKKDSFKILGISSLLSKELLENFVQIPKQWDKALNDGTLNQLYRLNNQTPLGLLG 187 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 + E +R+ I S + + +A+ G + +I Sbjct: 188 VN--IHQHEDWRYFIAVSSTNH----NQNFEEYHIGSATWAIFSGHGTNRTLQELQCRVI 241 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 WLP SG + P + Y + ++P+ Sbjct: 242 TEWLPTSGYEYANIPDIEVYLK----ADPNDAIYEYWLPI 277 >UniRef50_D1AJG5 Transcription activator effector binding protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AJG5_SEBTE Length = 153 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 14/160 (8%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE------LLNYSVAKFIMWRKETGLSPVNQSQTFGVAW 59 + I++ P+ +A + R + E + +F + ++ +GV Sbjct: 1 MKYEIVEIPTKTMAGISIRTTNENMQAVNDIGKLWEEFWNKNIFSFTENKKNNKMYGVYT 60 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 + + + F C VS +N S + +YA G D+ + +W I Sbjct: 61 -NYEGDFTKPYDFYACCEVSSEGNNNDE-FSVISVPESKYAKFSLRGNYDEAAEKLWNTI 118 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 Y N + L ++YV + Sbjct: 119 WETKLDRKYTYD----FEVYHNDGND--PENLLLEIYVAV 152 >UniRef50_B8H9I7 Transcription activator effector binding n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H9I7_ARTCA Length = 166 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 10/153 (6%) Query: 11 IDFPSIPVAMLPHRCSPELLNYSVAKFIM--WRKETGLSPVNQSQTFGVAWDDPATTAPE 68 + PVA++ + + L + F P T Sbjct: 17 VHLAEQPVAVVREQVRMDELPEFFGRAFASVMAAAQRQGAAPAGPPFARYHGMPGET--- 73 Query: 69 AFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 + ++ GV G L A H G D + HT I + + A G Sbjct: 74 -VDVEAGFPIAGGFTTAD-GVEAGTLPETDALEALHSGPYDTLQHTYGAIQQQ-MQADGL 130 Query: 129 KMRKAPILFHYTNLAE-GVTEQRLETDVYVPLA 160 + +Y + E +T V P+A Sbjct: 131 IPADT-MWEYYLSDPEKEPDPATWQTRVVWPVA 162 >UniRef50_B5JGT3 Bacterial transcription activator, effector binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGT3_9BACT Length = 318 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 19/172 (11%) Query: 3 NLTLDVNIIDFPSIPVAMLPHRCSPEL---------LNYSVAKFIMWRKETGLSPVNQSQ 53 N+ L I+ PS A L R + F E L + + Sbjct: 151 NMRLLPEIVSLPSTTFAGLQSRFLSATSDEANNMTVIPNLWNAFFERASE--LQNLTEGV 208 Query: 54 TFGVAWDDPATTA-----PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGEL 108 +G++ ++P P+ + V +P G+ + GG +A H G + Sbjct: 209 YYGLS-ENPEAINLARQHPDEAIYLAAAQV-DPDAPVPEGMHSWNSVGGLFAKFEHQGPV 266 Query: 109 DDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA 160 D + T+ I W P S K R+ P + + +E L +++VP++ Sbjct: 267 DTLGETIAYIYGKWFPESEYKEREGPDINRFGPRFIPQSENSL-FEIFVPIS 317 >UniRef50_D2AZ80 Putative transcriptional regulator, MerR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AZ80_STRRD Length = 262 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 15/155 (9%) Query: 7 DVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGL-SPVNQSQTFGVAWDDPAT 64 + ++ P+ VA++ + P+ + + + + PV F + DP Sbjct: 117 QIRLVTEPARRVAIVRESAAGPQDIGRATSAAVARLGTGAPGLPVQLIGLFPIDLGDPVP 176 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLP 124 D+ EP+ + L GG +A A H+G D I T ++ W Sbjct: 177 V-------DVALVTGEPVSGAELDM----LPGGVFACATHIGPYDQIPLTTHALLS-WCA 224 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 G PI Y + ++L T + +PL Sbjct: 225 EHGH-PVHGPIREVYVSDPATTAPEQLVTHLMIPL 258 >UniRef50_D1AG33 Transcriptional activator ligand binding domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG33_SEBTE Length = 280 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 7 DVNIIDFPSIPVAMLPHRCS----PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD-- 60 ++ I S+ A L R E L +K ++ + + Sbjct: 120 EITIKKTESVLAASLRRRFHKDFFDEELEEMWSKVNASIEKHKI--KKSVPCLMIYHTGW 177 Query: 61 -DPATTAPEAFRFDICGSVSEPIP---DNRYGVSNGELTGG-RYAVARHVGELDDISHTV 115 + A E R+ + +SEP+ ++ + +L + A H G + I +T Sbjct: 178 WNFADDEKEDERY-LDVEISEPVLKKFESDDEIRVYKLPAEEKMACVVHQGSFETIGNTF 236 Query: 116 WGIIRHWLPASGEKMRKAPILFHYTN-LAEGVTEQRLETDVYVPL 159 + W+ + + P+ Y T++ VP+ Sbjct: 237 EVFFK-WIRENKYVI-NGPLREIYHKGDWATDNPDEYITELQVPV 279 >UniRef50_B3PD71 Transcriptional regulatory protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD71_CELJU Length = 172 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 16/160 (10%) Query: 7 DVNIIDFPSIPVAMLPHRCSPE---LLNYSVAKFI-MWRKETGLSPVNQSQTFGVAWDDP 62 + I + +A L E + F W L+ +G+ Sbjct: 18 EPRIERSGPLLIAGLCQPLDSEAFTRIPQLWQDFTSQW---NQLAQRVGEVNYGLCM--- 71 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 A + ++ + + +S + YAV H G + I HT+ I W Sbjct: 72 -RADAGAIHYLAGCTLWD-FDNLPAALSRFVIPLQDYAVFHHEGHVSTIRHTIDAIFDRW 129 Query: 123 LPASGEKMRKA---PILFHYTNLAEGVTEQRLETDVYVPL 159 LP + ++ Y + VT + +++VP+ Sbjct: 130 LPQARFQLATQQSLHFFERYGEAFDPVT-GEGDIEIWVPV 168 >UniRef50_D2W154 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W154_NAEGR Length = 174 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 26/176 (14%) Query: 1 MTNLTLD--VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETG--LSPVNQSQTFG 56 M+ T + II P+ + ++ + F W KE +SPV + Sbjct: 1 MSTTTDQTAIKIITLPAKKYLGVRR----NNISIADGDFPKWIKEASRLISPVLNRTCYP 56 Query: 57 VAWDDPATTAPEAFRFDICGSVSEPI-------------PDNRYGVSNG--ELTGGRYAV 101 P +P+ + V + + N G+ E+ G YA Sbjct: 57 TVTAFPRFVSPQDADIEHLLFVDQELSIDSDLVNRVENSQPNDEGLKAQLSEMPSGEYAY 116 Query: 102 ARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYV 157 R+VG + +S +++ L SG + P Y N V ++ L TD+Y Sbjct: 117 FRYVGPYEGLSSVWNKLMKEKL--SGYVHTE-PCWEEYINDCTQVKKEELITDLYW 169 >UniRef50_A6M032 Transcription activator, effector binding n=19 Tax=Bacteria RepID=A6M032_CLOB8 Length = 285 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 9/160 (5%) Query: 5 TLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPAT 64 +D I++ S V + E + F E G +G++ D + Sbjct: 127 IMDYKIVEKDSFTVMGVSKVFKYENAFAEIPPFWTEHYEAG-KGKFVCGMYGISID--ES 183 Query: 65 TAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGE-LDDISHTVWGIIRHWL 123 + F + I P + G + +AV G + I WL Sbjct: 184 MGSDEFEYLIA-DNYNPSIEIPNGFVTKIIPKHTWAVFACKGAMPKSLQDMNRKIFSEWL 242 Query: 124 PA-SGEKMRKAPILFHYTNL---AEGVTEQRLETDVYVPL 159 P ++ + YT++ +G ++ +++++P+ Sbjct: 243 PNCKDYEIAAGYNIEMYTDIADYPKGNQDENYYSEIWIPV 282 >UniRef50_A1TW06 Transcription activator, effector binding n=2 Tax=Acidovorax RepID=A1TW06_ACIAC Length = 156 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 14/159 (8%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAK----FIMWRKETGLSPVNQSQTFGVAWDDPA 63 I+ + P A+ P C+ E + + + + G+SP T Sbjct: 5 PRIVQMEAQPAALWPVSCTREEIQQVMGRSVRALMDALAAQGVSPAGPLFT------HHL 58 Query: 64 TTAPEAFRFDICGSVSEPI-PDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 + F F + V +P+ P G+ GE R A + G +D+ W Sbjct: 59 RRPTDTFEFHLGVPVDKPVGPGPDGGLQPGEWPAMRVARTEYRGRYEDLPQAWET-FHRW 117 Query: 123 LPASGEKMRKAPILFHYTNLAEG-VTEQRLETDVYVPLA 160 + A G + + + Y E T++ PLA Sbjct: 118 IGAQGVRPAED-VWERYLTGPETGSDPGGWRTELIQPLA 155 >UniRef50_UPI0001C318BF transcriptional activator ligand binding domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318BF Length = 279 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 24/170 (14%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIM--WRKETGLSPVNQSQTFGVAWDD 61 + +V+ P + L + E L+ A + R + G+ Sbjct: 114 MPYEVSTATLPPRRLLGLRGTTTAERLHRDAAALVEQLLRALPWAAAPGAPPLVGLY--- 170 Query: 62 PATTAPEAFRFDICGSVSEPIPDN------------RYGVSNGELTGGRYAVARHVGELD 109 P D+ +V + G+ EL GG A HVG D Sbjct: 171 -----PLDLDGDVAFAVGVDPAASAAPEAAGAAASRPDGIVPIELPGGAIARVTHVGSYD 225 Query: 110 DISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++ + ++ WL G P+ Y + V RL T+V +PL Sbjct: 226 ELPLAYFPLLA-WLQERGH-PAAGPVRETYLDDPSEVEPTRLRTEVSIPL 273 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 11 IDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAF 70 I+ P +A + H S + L + + W +E G + DDP+ P Sbjct: 208 IELPGGAIARVTHVGSYDELPLAYFPLLAWLQERGHPAAGPVRE--TYLDDPSEVEPTRL 265 Query: 71 RFDICGSVSEPIP 83 R ++ +++P Sbjct: 266 RTEVSIPLTDPED 278 >UniRef50_UPI0001C357C1 AraC family transcription regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357C1 Length = 307 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 15/161 (9%) Query: 8 VNIIDFPSIPVAML--PHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 V + + + V + + +F K+ +S + + +D + Sbjct: 152 VTMREAKELSVVGYCSSTKGGFAGIGRCWRRF--HAKKDRISGCTNKEFL-IGINDYSYY 208 Query: 66 A----PEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-ISHTVWGIIR 120 + FR+ V + G+ L GR V G +D + V I Sbjct: 209 PCKGLDQVFRYIAGAEVMQEYTA-PKGMQKFTLPAGRCVVFSFRGRNEDSLQPVVEYIYG 267 Query: 121 HWLPASGEKMRK--APILFHYTNLAEGVTEQRLETDVYVPL 159 W P S + + Y + E ++ ++VP+ Sbjct: 268 EWFPDSTCRFDEDRRYDFARYGEQLDEHGESEIQ--LWVPV 306 >UniRef50_A8L3Q5 Transcriptional regulator, MerR family n=6 Tax=Actinomycetales RepID=A8L3Q5_FRASN Length = 270 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 7/155 (4%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATT 65 L+V + P+ VA + + + A+ + L+ + G +D+ T Sbjct: 116 LEVRLRSVPARTVAAISGTVDHDDVLAWYAEAMTELDAA-LAGRERLGPPGGCFDNELFT 174 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 A R + P R V+ L A A H G DDI T + W+ Sbjct: 175 AG---RGMVLVHRPSADPPTRGRVTPRTLPAVELATAVHHGAHDDIDVTYGRL-GAWVVD 230 Query: 126 SGEKMRKAPILFHYTNLAEGVT-EQRLETDVYVPL 159 + P+ Y + T++ P+ Sbjct: 231 HALAV-DGPVHETYLTGPRDDPAPRSWRTEIGWPI 264 >UniRef50_B1I236 Transcription activator, effector binding n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I236_DESAP Length = 160 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 10/156 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAP 67 V + + P+ VA + L++ +V +W +E G GV ++P P Sbjct: 5 VTLKNIPACTVAYKSGKGPYSLISEAVRDLNLWIRENGH--TAAGPPVGVFKNNP-YMPP 61 Query: 68 EAFRFDICGSV----SEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWL 123 E +++ + +P+ ++ R +A H G+LD + + G+IR ++ Sbjct: 62 EELLWEVQVPLKLDGPLSVPETDTTPGLKDVPD-RQVMAAHQGDLDTLGEALQGLIR-FM 119 Query: 124 PASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 ++G +M AP + LE ++ + + Sbjct: 120 VSNGYRMT-APPEQVFLKDPVTTPPHELEGELRLTV 154 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 3/74 (4%) Query: 86 RYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEG 145 V+ + A G IS V + W+ +G P + + N Sbjct: 2 PETVTLKNIPACTVAYKSGKGPYSLISEAVRDL-NLWIRENGHT-AAGPPVGVFKNNPY- 58 Query: 146 VTEQRLETDVYVPL 159 + + L +V VPL Sbjct: 59 MPPEELLWEVQVPL 72 >UniRef50_C5QV75 DNA gyrase inhibitor n=9 Tax=Staphylococcus RepID=C5QV75_STAEP Length = 154 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 6/154 (3%) Query: 6 LDVNIIDFPSIPVAMLPHRCSPE--LLNYSVAKFIMWRKETGLSP-VNQSQTFGVAWDDP 62 + I V + + + + F W V + G+A D+P Sbjct: 1 MKYKIEKLDDSSVVYMRMIGTYQSDENFEMMKTFKHWIHTNHYWKYVEKYGVLGIALDNP 60 Query: 63 ATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHW 122 R+D+ + E + N +S GG YAV + +I + + + Sbjct: 61 LHVQSNQCRYDVVLRIDETV--NDQTISKRNFIGGIYAVFKISHTKRNIENFFSHL-ENI 117 Query: 123 LPASGEKMRKAPILFHYTNLAEGVTEQRLETDVY 156 L + +MR PI+ Y + +Y Sbjct: 118 LNETHLRMRNEPIIERYIEEEGTDKVCEMLVPIY 151 >UniRef50_C2AQJ3 Predicted transcriptional regulator n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AQJ3_TSUPA Length = 281 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 48/157 (30%), Gaps = 20/157 (12%) Query: 14 PSIPVAMLPHRC-SPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTAPEAFR- 71 P+ VA L + +E G+ P + DD FR Sbjct: 133 PARTVASLRGTVADYAAEGTLWERLFPALQEQGIVPGALGGC--IEHDD-------EFRE 183 Query: 72 FDICGSVSEPIPDNR---YGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPASGE 128 D+ SV +P V L R VA VG + +I + G Sbjct: 184 HDVDESVFVDVPAGTTAHAPVRILNLPERRAVVAAVVGPYHEAIPRAHELIGAAVAEQGL 243 Query: 129 KMR---KAP---ILFHYTNLAEGVTEQRLETDVYVPL 159 + P Y + V +RL T VYVP+ Sbjct: 244 TLTRTTGDPATHHFNVYLDDPCAVPPERLRTKVYVPV 280 >UniRef50_C9AYK3 MerR-family transcriptional regulator n=6 Tax=Firmicutes RepID=C9AYK3_ENTCA Length = 266 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 59/161 (36%), Gaps = 8/161 (4%) Query: 2 TNLTLDVNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWD 60 + + P++ VA + + L + + + + G F + D Sbjct: 106 EEANYQMIVKRLPAVIVASMRMVVPNFDRLFSMIPEMGLQMETAGCVCALPEYCFTIYHD 165 Query: 61 DPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVAR-HVGELDDISHTVWGII 119 + E ++C +V+E + DN+ ++ ++ AV H G + +I Sbjct: 166 N--EYKEENIDVEVCEAVTE-MKDNQGNLTFKQIEEVPEAVCTVHKGAYTEFPKAYAAVI 222 Query: 120 RHWLPASGEKMRKAPILFHYTNL-AEGVTEQRLETDVYVPL 159 + +G ++ P Y + +E+ T++ +P+ Sbjct: 223 -QFAENNGYRITG-PFRESYIDGIWNKESEEEWLTEIQLPV 261 >UniRef50_D2NAV2 Transcriptional regulator n=1 Tax=Staphylococcus aureus subsp. aureus ST398 RepID=D2NAV2_STAAU Length = 288 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 15/167 (8%) Query: 4 LTLDVNIIDFPSIPVAML--PHRCSPELLNYSVAKF------IMWRKETGLSPVNQSQTF 55 + + I+D P I + + R E +N + + I + L + + Sbjct: 124 IDMKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITNIQKEEMNNLQNIEPKEIV 183 Query: 56 GVAWDDPA--TTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDD-IS 112 V++D I +E + + + ++ V + G+ + Sbjct: 184 NVSYDADENFIKEEGYLTHMIGVITTEN--NISDQLDVINIDESKWIVFENEGKFPKVLQ 241 Query: 113 HTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159 T I WLP + K+ P+ ++++V + Sbjct: 242 DTYAKIYSEWLPETEYKLANVPMFSF--TKFNDSDSDNAYSEIWVAV 286 >UniRef50_A8TCQ3 Putative transcriptional regulator, MerR family n=1 Tax=Methanococcus voltae A3 RepID=A8TCQ3_METVO Length = 283 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 8/159 (5%) Query: 4 LTLDVNIIDFPSIPVAMLPHRCSPEL-LNYSVAKFIMW---RKETGLSPVNQSQTFGVAW 59 +T + I + V + +A + + + + Sbjct: 120 MTNEPVIKTIEKVRVLSKREFGTYGTSCTKLIADLMHMIYSAENRKKDIKIVGPPMMLCY 179 Query: 60 DDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGII 119 D E ++ +S I + L H G + + I+ Sbjct: 180 D--GEYVEEGADIEMAIPISGNIELTDEKMELKYLPSVEVVSIIHKGPYSTLCSSYAKIM 237 Query: 120 RHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVP 158 + + K+ P Y N LET++ P Sbjct: 238 -EYAEKNDLKLV-IPDRELYFNSPMDTPIDELETEIQYP 274 >UniRef50_A0JSY2 Transcription activator, effector binding n=1 Tax=Arthrobacter sp. FB24 RepID=A0JSY2_ARTS2 Length = 156 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 10/156 (6%) Query: 8 VNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKE--TGLSPVNQSQTFGVAWDDPATT 65 + ++ P P A++ + L + + FG P T Sbjct: 8 IRLVQRPEQPTAVVREKVPMNALPEFFGRAYGAVMAAVQNQAVQIAGPPFGRYLSMPTDT 67 Query: 66 APEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRHWLPA 125 + V+ P P GV+ G L + A H G D +S T I + + Sbjct: 68 ----VDVEAGFPVAAPFPGAE-GVAPGILPACQAFEATHTGPYDTLSATYDAI-QERMKE 121 Query: 126 SGEKMRKAPILFHYTNLA-EGVTEQRLETDVYVPLA 160 G + + +Y + +T V P+A Sbjct: 122 EGFTPADS-MWEYYLSDPAAEPDPATWKTLVVWPVA 156 >UniRef50_D0NCH1 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCH1_PHYIN Length = 157 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 11/158 (6%) Query: 8 VNIIDFPSIPVAMLPHRCS-PELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDDPATTA 66 I ++ V L AK + K + + +D T Sbjct: 6 PTIKSLAAVRVLSLRSVLPNYRAQGDLWAKIFAFAKTHNVVVAGPTFAIN-YTEDGRQTD 64 Query: 67 PEAFRFDICGSVSEPI-PDNRYGVSNGELTG-GRYAVARHVGELDDISHTVWGIIRHWLP 124 E ++C ++ S E++ R AV +VG + W+ Sbjct: 65 VE---VEVCLPTAKDAYVPEEAPFSVHEVSAVDRGAVMVYVGPCEGYVSAYVTFFG-WIR 120 Query: 125 ASGEKMRKAPILFHYTNLAEGVTEQR--LETDVYVPLA 160 + P Y G E T++ +P+A Sbjct: 121 SEKLTPAG-PSREVYVKRPTGNEEDDQGSVTEIQLPVA 157 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.153 0.440 Lambda K H 0.267 0.0468 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,101,736,631 Number of Sequences: 3077464 Number of extensions: 45157125 Number of successful extensions: 103442 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 527 Number of HSP's successfully gapped in prelim test: 664 Number of HSP's that attempted gapping in prelim test: 100958 Number of HSP's gapped (non-prelim): 1509 length of query: 160 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 42 effective length of database: 677,255,604 effective search space: 28444735368 effective search space used: 28444735368 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 88 (38.3 bits)