Phyre 2 Results for P0AC81

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Email | l.a.kelley@imperial.ac.uk
Description | P0AC81
Date | Thu Jan 5 11:17:30 GMT 2012
Unique Job ID | c369870adea00cff

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1f9za_
Top template information
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase)
Confidence and coverage
Confidence: | 99.9% | Coverage: | 95%
128 residues ( 95% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | L | L | H | T | M | L | R | V | G | D | L | Q | R | S | I | D | F | Y | T | K | V | L | G | M | K | L | L | R | T | S | E | N | P | E | Y | K | Y | S | L | A | F | V | G | Y | G | P | E | T | E | E | A | V | I | E | L | T | Y | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | W | G | V | D | K | Y | E | L | G | T | A | Y | G | H | I | A | L | S | V | D | N | A | A | E | A | C | E | K | I | R | Q | N | G | G | N | V | T | R | E | A | G | P | V | K | G | G | T | T | V | I | A | F | V | E | D | P | D | G | Y | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | .
Sequence |  | I | E | L | I | E | E | K | D | A | G | R | G | L | G | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1f9za_ |

### PDB 1f9z chain A

Region: 1 - 128
Aligned: 128
Modelled: 128
Confidence: 99.9%
Identity: 98%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Glyoxalase I (lactoylglutathione lyase)

Phyre2
2 |
| d1qipa_ |

### PDB 1qip chain A

Region: 1 - 131
Aligned: 129
Modelled: 131
Confidence: 99.9%
Identity: 33%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Glyoxalase I (lactoylglutathione lyase)

Phyre2
3 |
| d1mpya2 |

### PDB 1mpy chain A domain 2

Region: 1 - 128
Aligned: 123
Modelled: 128
Confidence: 99.9%
Identity: 15%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
4 |
| d2c21a1 |

### PDB 2c21 chain A domain 1

Region: 2 - 129
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 53%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Glyoxalase I (lactoylglutathione lyase)

Phyre2
5 |
| c3oa4A_ |

### PDB 3oa4 chain A

Region: 1 - 130
Aligned: 130
Modelled: 130
Confidence: 99.8%
Identity: 23%
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase;
PDBTitle: crystal structure of hypothetical protein bh1468 from bacillus2 halodurans c-125

Phyre2
6 |
| c2qh0A_ |

### PDB 2qh0 chain A

Region: 1 - 126
Aligned: 126
Modelled: 126
Confidence: 99.8%
Identity: 19%
PDB header:lyase
Chain: A: PDB Molecule:lactoylglutathione lyase;
PDBTitle: crystal structure of a glyoxalase from clostridium acetobutylicum

Phyre2
7 |
| d1q0oa2 |

### PDB 1q0o chain A domain 2

Region: 1 - 126
Aligned: 119
Modelled: 126
Confidence: 99.8%
Identity: 17%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
8 |
| d1jc4a_ |

### PDB 1jc4 chain A

Region: 1 - 128
Aligned: 128
Modelled: 128
Confidence: 99.8%
Identity: 18%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Methylmalonyl-CoA epimerase

Phyre2
9 |
| c3bt3B_ |

### PDB 3bt3 chain B

Region: 1 - 126
Aligned: 123
Modelled: 126
Confidence: 99.8%
Identity: 11%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type;
PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans

Phyre2
10 |
| d1twua_ |

### PDB 1twu chain A

Region: 1 - 127
Aligned: 125
Modelled: 125
Confidence: 99.8%
Identity: 15%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Hypothetical protein YycE

Phyre2
11 |
| d1mpya1 |

### PDB 1mpy chain A domain 1

Region: 1 - 128
Aligned: 119
Modelled: 128
Confidence: 99.8%
Identity: 18%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
12 |
| c3l7tB_ |

### PDB 3l7t chain B

Region: 2 - 125
Aligned: 123
Modelled: 124
Confidence: 99.8%
Identity: 21%
PDB header:metal binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1112c

Phyre2
13 |
| d1zswa1 |

### PDB 1zsw chain A domain 1

Region: 2 - 131
Aligned: 130
Modelled: 130
Confidence: 99.8%
Identity: 12%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: BC1024-like

Phyre2
14 |
| c3e5dA_ |

### PDB 3e5d chain A

Region: 1 - 125
Aligned: 124
Modelled: 124
Confidence: 99.8%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:putative glyoxalase i;
PDBTitle: crystal structure of a putative glyoxalase i (lmof2365_0426) from2 listeria monocytogenes str. 4b f2365 at 2.70 a resolution

Phyre2
15 |
| d1lgta2 |

### PDB 1lgt chain A domain 2

Region: 1 - 129
Aligned: 123
Modelled: 129
Confidence: 99.8%
Identity: 20%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
16 |
| c2r6uB_ |

### PDB 2r6u chain B

Region: 2 - 128
Aligned: 120
Modelled: 127
Confidence: 99.8%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of gene product rha04853 from rhodococcus sp. rha1

Phyre2
17 |
| c3rmuD_ |

### PDB 3rmu chain D

Region: 2 - 125
Aligned: 124
Modelled: 124
Confidence: 99.8%
Identity: 24%
PDB header:isomerase
Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial;
PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee

Phyre2
18 |
| c2p25A_ |

### PDB 2p25 chain A

Region: 2 - 125
Aligned: 122
Modelled: 124
Confidence: 99.8%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase family protein;
PDBTitle: the crystal structure of the glyoxalase family protein from2 enterococcus faecalis

Phyre2
19 |
| d1f1xa1 |

### PDB 1f1x chain A domain 1

Region: 1 - 135
Aligned: 125
Modelled: 130
Confidence: 99.8%
Identity: 22%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
20 |
| d1f1ua1 |

### PDB 1f1u chain A domain 1

Region: 1 - 135
Aligned: 125
Modelled: 135
Confidence: 99.8%
Identity: 22%
Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family: Extradiol dioxygenases

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1f9za_ |
|  | 99.9 | 98 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase)
2 | d1qipa_ |
|  | 99.9 | 33 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase)
3 | d1mpya2 |
|  | 99.9 | 15 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
4 | d2c21a1 |
|  | 99.9 | 53 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Glyoxalase I (lactoylglutathione lyase)
5 | c3oa4A_ |
|  | 99.8 | 23 | PDB header:lyase Chain: A: PDB Molecule:glyoxalase; PDBTitle: crystal structure of hypothetical protein bh1468 from bacillus2 halodurans c-125
6 | c2qh0A_ |
|  | 99.8 | 19 | PDB header:lyase Chain: A: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of a glyoxalase from clostridium acetobutylicum
7 | d1q0oa2 |
|  | 99.8 | 17 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
8 | d1jc4a_ |
|  | 99.8 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Methylmalonyl-CoA epimerase
9 | c3bt3B_ |
|  | 99.8 | 11 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type; PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans
10 | d1twua_ |
|  | 99.8 | 15 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein YycE
11 | d1mpya1 |
|  | 99.8 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
12 | c3l7tB_ |
|  | 99.8 | 21 | PDB header:metal binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1112c
13 | d1zswa1 |
|  | 99.8 | 12 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:BC1024-like
14 | c3e5dA_ |
|  | 99.8 | 21 | PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase i; PDBTitle: crystal structure of a putative glyoxalase i (lmof2365_0426) from2 listeria monocytogenes str. 4b f2365 at 2.70 a resolution
15 | d1lgta2 |
|  | 99.8 | 20 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
16 | c2r6uB_ |
|  | 99.8 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of gene product rha04853 from rhodococcus sp. rha1
17 | c3rmuD_ |
|  | 99.8 | 24 | PDB header:isomerase Chain: D: PDB Molecule:methylmalonyl-coa epimerase, mitochondrial; PDBTitle: crystal structure of human methylmalonyl-coa epimerase, mcee
18 | c2p25A_ |
|  | 99.8 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: the crystal structure of the glyoxalase family protein from2 enterococcus faecalis
19 | d1f1xa1 |
|  | 99.8 | 22 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
20 | d1f1ua1 |
|  | 99.8 | 22 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
21 | c3rriB_ |
| not modelled | 99.8 | 18 | PDB header:metal binding protein Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of glyoxalase/bleomycin resistance2 protein/dioxygenase from alicyclobacillus acidocaldarius
22 | c3huhA_ |
| not modelled | 99.8 | 19 | PDB header:viral protein Chain: A: PDB Molecule:virulence protein stm3117; PDBTitle: the structure of biphenyl-2,3-diol 1,2-dioxygenase iii-2 related protein from salmonella typhimurium
23 | c3ct8A_ |
| not modelled | 99.8 | 19 | PDB header:lyase Chain: A: PDB Molecule:putative glyoxalase; PDBTitle: crystal structure of a putative glyoxalase (np_243026.1) from bacillus2 halodurans at 2.10 a resolution
24 | c3g12A_ |
| not modelled | 99.8 | 18 | PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus
25 | c1zswA_ |
| not modelled | 99.8 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of bacillus cereus metallo protein from glyoxalase2 family
26 | d1zswa2 |
| not modelled | 99.8 | 12 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:BC1024-like
27 | c3zw5A_ |
| not modelled | 99.8 | 18 | PDB header:lyase Chain: A: PDB Molecule:glyoxalase domain-containing protein 5; PDBTitle: crystal structure of the human glyoxalase domain-containing2 protein 5
28 | c3ey7B_ |
| not modelled | 99.8 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl-2,3-diol 1,2-dioxygenase iii-related PDBTitle: structure from the mobile metagenome of v. cholerae.2 integron cassette protein vch_cass1
29 | d1f1ua2 |
| not modelled | 99.8 | 16 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
30 | c2qqzB_ |
| not modelled | 99.8 | 22 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase family protein, putative; PDBTitle: crystal structure of putative glyoxalase family protein from bacillus2 anthracis
31 | d1f1xa2 |
| not modelled | 99.8 | 17 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
32 | d1ss4a_ |
| not modelled | 99.8 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein BC1747
33 | c3bqxA_ |
| not modelled | 99.8 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glyoxalase-related enzyme; PDBTitle: high resolution crystal structure of a glyoxalase-related enzyme from2 fulvimarina pelagi
34 | c3ghjA_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative integron gene cassette protein; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass4
35 | c1mpyD_ |
| not modelled | 99.8 | 17 | PDB header:oxidoreductase Chain: D: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: structure of catechol 2,3-dioxygenase (metapyrocatechase)2 from pseudomonas putida mt-2
36 | d1kw3b2 |
| not modelled | 99.8 | 19 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
37 | c3pkwA_ |
| not modelled | 99.8 | 20 | PDB header:lyase Chain: A: PDB Molecule:toxoflavin lyase (tfla); PDBTitle: crystal structure of toxoflavin lyase (tfla) bound to mn(ii)
38 | c2rk0B_ |
| not modelled | 99.8 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase domain; PDBTitle: crystal structure of glyoxylase/bleomycin resistance2 protein/dioxygenase domain from frankia sp. ean1pec
39 | d2i7ra1 |
| not modelled | 99.8 | 15 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
40 | c2kjzA_ |
| not modelled | 99.8 | 16 | PDB header:unknown function Chain: A: PDB Molecule:atc0852; PDBTitle: solution nmr structure of protein atc0852 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att2.
41 | c3r4qB_ |
| not modelled | 99.8 | 15 | PDB header:lyase Chain: B: PDB Molecule:lactoylglutathione lyase; PDBTitle: crystal structure of lactoylglutathione lyase from agrobacterium2 tumefaciens
42 | c3kolA_ |
| not modelled | 99.8 | 24 | PDB header:metal binding protein Chain: A: PDB Molecule:glyoxalase/bleomycin resistance PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme
43 | c3hpyD_ |
| not modelled | 99.8 | 16 | PDB header:oxidoreductase Chain: D: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: crystal structure analysis of the 2,3-dioxygenase lapb from2 pseudomonas in the complex with 4-methylcatechol
44 | c3lm4C_ |
| not modelled | 99.7 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxy biphenyl dioxygenase from2 rhodococcus sp. (strain rha1)
45 | c3r6aB_ |
| not modelled | 99.7 | 23 | PDB header:isomerase, lyase Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein (hypothetical protein2 mm_3218) from methanosarcina mazei.
46 | c2rbbB_ |
| not modelled | 99.7 | 11 | PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase family enzyme from burkholderia phytofirmans psjn
47 | d1kw3b1 |
| not modelled | 99.7 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
48 | c3oajA_ |
| not modelled | 99.7 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative ring-cleaving dioxygenase mhqo; PDBTitle: crystal structure of putative dioxygenase from bacillus subtilis2 subsp. subtilis str. 168
49 | c3gm5A_ |
| not modelled | 99.7 | 19 | PDB header:isomerase Chain: A: PDB Molecule:lactoylglutathione lyase and related lyases; PDBTitle: crystal structure of a putative methylmalonyl-coenzyme a2 epimerase from thermoanaerobacter tengcongensis at 2.0 a3 resolution
50 | c3itwA_ |
| not modelled | 99.7 | 15 | PDB header:peptide binding protein Chain: A: PDB Molecule:protein tiox; PDBTitle: crystal structure of tiox from micromonospora sp. ml1
51 | c3m2oB_ |
| not modelled | 99.7 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein; PDBTitle: crystal structure of a putative glyoxalase/bleomycin resistance2 protein from rhodopseudomonas palustris cga009
52 | c2p7pB_ |
| not modelled | 99.7 | 19 | PDB header:metal binding protein, hydrolase Chain: B: PDB Molecule:glyoxalase family protein; PDBTitle: crystal structure of genomically encoded fosfomycin resistance2 protein, fosx, from listeria monocytogenes complexed with mn(ii) and3 sulfate ion
53 | c3ecjC_ |
| not modelled | 99.7 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:protein (homoprotocatechuate 2,3-dioxygenase); PDBTitle: structure of e323l mutant of homoprotocatechuate 2,3-dioxygenase from2 brevibacterium fuscum at 1.65a resolution
54 | c1f1uB_ |
| not modelled | 99.7 | 22 | PDB header:oxidoreductase Chain: B: PDB Molecule:homoprotocatechuate 2,3-dioxygenase; PDBTitle: crystal structure of homoprotocatechuate 2,3-dioxygenase from2 arthrobacter globiformis (native, low temperature)
55 | c3rheA_ |
| not modelled | 99.7 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:nad-dependent benzaldehyde dehydrogenase; PDBTitle: the crystal structure of nad-dependent benzaldehyde dehydrogenase from2 legionella pneumophila
56 | d1lgta1 |
| not modelled | 99.7 | 21 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
57 | d1klla_ |
| not modelled | 99.7 | 16 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
58 | d1npba_ |
| not modelled | 99.7 | 20 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
59 | c2zi8A_ |
| not modelled | 99.7 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable biphenyl-2,3-diol 1,2-dioxygenase bphc; PDBTitle: crystal structure of the hsac extradiol dioxygenase from m.2 tuberculosis in complex with 3,4-dihydroxy-9,10-3 seconandrost-1,3,5(10)-triene-9,17-dione (dhsa)
60 | d1r9ca_ |
| not modelled | 99.7 | 17 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
61 | d1xqaa_ |
| not modelled | 99.7 | 20 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
62 | d1sqia1 |
| not modelled | 99.7 | 17 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
63 | d1nkia_ |
| not modelled | 99.7 | 23 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
64 | c3b59A_ |
| not modelled | 99.7 | 18 | PDB header:lyase Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of the mn(ii)-bound glyoxalase from novosphingobium2 aromaticivorans
65 | d1t47a1 |
| not modelled | 99.7 | 16 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
66 | c3sk1C_ |
| not modelled | 99.7 | 13 | PDB header:griseoluteate-binding protein Chain: C: PDB Molecule:ehpr; PDBTitle: crystal structure of phenazine resistance protein ehpr from2 enterobacter agglomerans (erwinia herbicola, pantoea agglomerans)3 eh1087, apo form
67 | c2qntA_ |
| not modelled | 99.7 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1872; PDBTitle: crystal structure of protein of unknown function from agrobacterium2 tumefaciens str. c58
68 | c2rk9B_ |
| not modelled | 99.7 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: the crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase superfamily member from vibrio splendidus 12b01
69 | d1sp8a1 |
| not modelled | 99.6 | 19 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
70 | d2pjsa1 |
| not modelled | 99.6 | 20 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
71 | c2ei2A_ |
| not modelled | 99.6 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:1,2-dihydroxynaphthalene dioxygenase; PDBTitle: crystal structure analysis of the 1,2-dihydroxynaphthalene dioxygenase2 from pseudomonas sp. stain c18
72 | c2wl9A_ |
| not modelled | 99.6 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:catechol 2,3-dioxygenase; PDBTitle: crystal structure of catechol 2,3-dioxygenase
73 | c1knfA_ |
| not modelled | 99.6 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:2,3-dihydroxybiphenyl 1,2-dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxybiphenyl 1,2-dioxygenase complexed2 with 3-methyl catechol under anaerobic condition
74 | c1sp8A_ |
| not modelled | 99.6 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: 4-hydroxyphenylpyruvate dioxygenase
75 | c1kw3B_ |
| not modelled | 99.6 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:2,3-dihydroxybiphenyl dioxygenase; PDBTitle: crystal structure of 2,3-dihydroxybiphenyal dioxygenase (bphc) at 1.452 a resolution
76 | d1sqda1 |
| not modelled | 99.6 | 19 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
77 | c1t47A_ |
| not modelled | 99.6 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structure of fe2-hppd bound to ntbc
78 | c2zw7A_ |
| not modelled | 99.5 | 12 | PDB header:transferase Chain: A: PDB Molecule:bleomycin acetyltransferase; PDBTitle: crystal structure of bleomycin n-acetyltransferase complexed2 with bleomycin a2 and coenzyme a
79 | c3fcdB_ |
| not modelled | 99.5 | 14 | PDB header:lyase Chain: B: PDB Molecule:lyase; PDBTitle: crystal structure of a putative glyoxalase from an2 environmental bacteria
80 | d1sp9a_ |
| not modelled | 99.5 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
81 | c1sqiA_ |
| not modelled | 99.5 | 16 | PDB header:biosynthetic protein Chain: A: PDB Molecule:4-hydroxyphenylpyruvic acid dioxygenase; PDBTitle: structural basis for inhibitor selectivity revealed by2 crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases
82 | d1ecsa_ |
| not modelled | 99.5 | 22 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
83 | c1tfzA_ |
| not modelled | 99.5 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structural basis for herbicidal inhibitor selectivity revealed by2 comparison of crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases
84 | d1jifa_ |
| not modelled | 99.5 | 12 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
85 | c2r5vA_ |
| not modelled | 99.5 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:pcza361.1; PDBTitle: hydroxymandelate synthase crystal structure
86 | d1xy7a_ |
| not modelled | 99.5 | 14 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Hypothetical protein At5g48480
87 | c2q48A_ |
| not modelled | 99.5 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein at5g48480; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at5g48480
88 | d1xrka_ |
| not modelled | 99.4 | 17 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Antibiotic resistance proteins
89 | d1cjxa2 |
| not modelled | 99.4 | 21 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
90 | c3e0rC_ |
| not modelled | 99.4 | 20 | PDB header:hydrolase Chain: C: PDB Molecule:c3-degrading proteinase (cppa protein); PDBTitle: crystal structure of cppa protein from streptococcus pneumoniae tigr4
91 | c1cjxC_ |
| not modelled | 99.4 | 12 | PDB header:oxidoreductase Chain: C: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: crystal structure of pseudomonas fluorescens hppd
92 | d1t47a2 |
| not modelled | 99.4 | 20 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
93 | d1sqia2 |
| not modelled | 99.3 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
94 | d1sp8a2 |
| not modelled | 99.3 | 19 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
95 | d1cjxa1 |
| not modelled | 99.3 | 12 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
96 | d1u6la_ |
| not modelled | 99.2 | 16 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase
97 | d1sqda2 |
| not modelled | 99.2 | 18 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases
98 | c3l20A_ |
| not modelled | 99.1 | 10 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from staphylococcus aureus
99 | d1u7ia_ |
| not modelled | 98.9 | 12 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase
100 | c3omsA_ |
| not modelled | 98.8 | 12 | PDB header:transferase Chain: A: PDB Molecule:phnb protein; PDBTitle: putative 3-demethylubiquinone-9 3-methyltransferase, phnb protein,2 from bacillus cereus.
101 | d1tsja_ |
| not modelled | 97.8 | 10 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase
102 | d1u69a_ |
| not modelled | 96.2 | 11 | Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase
103 | c3opyH_ |
| not modelled | 84.8 | 20 | PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
104 | c3opyB_ |
| not modelled | 84.1 | 20 | PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
105 | c3opyE_ |
| not modelled | 67.1 | 20 | PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
106 | d2g3aa1 |
| not modelled | 65.4 | 7 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
107 | d1y9wa1 |
| not modelled | 42.0 | 22 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
108 | d1ghea_ |
| not modelled | 37.9 | 12 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
109 | c1ib1E_ |
| not modelled | 36.1 | 9 | PDB header:signaling protein/transferase Chain: E: PDB Molecule:serotonin n-acetyltransferase; PDBTitle: crystal structure of the 14-3-3 zeta:serotonin n-2 acetyltransferase complex
110 | d3etja1 |
| not modelled | 33.3 | 24 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
111 | c3lodA_ |
| not modelled | 32.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:putative acyl-coa n-acyltransferase; PDBTitle: the crystal structure of the putative acyl-coa n-acyltransferase from2 klebsiella pneumoniae subsp.pneumoniae mgh 78578
112 | c2qecA_ |
| not modelled | 25.5 | 16 | PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase hpa2 and related PDBTitle: crystal structure of histone acetyltransferase hpa2 and related2 acetyltransferase (np_600742.1) from corynebacterium glutamicum atcc3 13032 at 1.90 a resolution

Binding site prediction |

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0