BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (110 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacte...   126   2e-28
UniRef50_B7LQG8 Stress response protein, acid-resistance protein...   117   1e-25
UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio ...   107   1e-22
UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Provide...   104   7e-22
UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella Re...   104   9e-22
UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacter...   101   6e-21
UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...   100   1e-20
UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=...    99   2e-20
UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=...    98   8e-20
UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 Re...    83   3e-15
UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    83   3e-15
UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio ...    81   9e-15
UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovo...    74   2e-12
UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Provide...    51   1e-05
UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=...    46   5e-04
UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepI...    42   0.007
UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=H...    39   0.032
UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    39   0.033
UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5X...    39   0.038
UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobact...    39   0.043
UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein...    39   0.048
UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providenc...    38   0.083
UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chrooco...    38   0.084

>UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacteriaceae
           RepID=HDEA_ECO57
          Length = 110

 Score =  126 bits (317), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL
Sbjct: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM
Sbjct: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110


>UniRef50_B7LQG8 Stress response protein, acid-resistance protein n=1
           Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG8_ESCF3
          Length = 127

 Score =  117 bits (292), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 87/110 (79%), Positives = 102/110 (92%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK + ++LGGLLL+PV+SNAA+ QKAADN+KPVNSWTCEDFLA+D +FQPTAVGFAEAL
Sbjct: 18  MKKAISILLGGLLLMPVISNAAETQKAADNQKPVNSWTCEDFLALDATFQPTAVGFAEAL 77

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           N KDKPEDAV+DVQGI TVTPAIVQACTQDK+A+FK+K +GEW KIKKD+
Sbjct: 78  NKKDKPEDAVMDVQGIETVTPAIVQACTQDKKASFKEKAQGEWAKIKKDL 127


>UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NTA9_9VIBR
          Length = 107

 Score =  107 bits (267), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKK--PVNSWTCEDFLAVDESFQPTAVGFAE 58
           MKK   V++   +   V  ++  +    ++++   V+  TCE F  ++   QP  + +  
Sbjct: 1   MKKPFTVLILAAVFGVVGYSSVKSYAECEDQEILSVDKMTCEQFNELELQTQPVVMEYLL 60

Query: 59  ALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
           + N        +++  GI      + Q C         D V  E
Sbjct: 61  SWNYNTDEVAVIIESNGIEAYIDELAQQCRDTPDIMLHDIVVDE 104


>UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Providencia
           RepID=B2PWI3_PROST
          Length = 113

 Score =  104 bits (260), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
           +  G++ + +++ +A A     + KPV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 18  LFAGIITMSLMATSAFA---TTDTKPVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 74

Query: 68  DAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
           D  L++ GI TVTP IV AC +  + +F  KV+    K
Sbjct: 75  DPTLNISGIETVTPLIVDACKKAPKESFIQKVEEYLKK 112


>UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella RepID=HDEA_BRUA2
          Length = 114

 Score =  104 bits (259), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query: 15  LPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQ 74
              ++ +A   K    KK V+  TCEDF  ++ESF+PT VG+    N K K EDAV+DV 
Sbjct: 22  GGAMAESAKTHKTDMAKKKVSELTCEDFNGLEESFKPTVVGWVVGFNKKGKEEDAVIDVD 81

Query: 75  GIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
           GI TVTPAI++AC Q+ +A+F  K + E  K+
Sbjct: 82  GIETVTPAIIEACKQEPKASFWKKAEAELKKV 113


>UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacterium
           RepID=B1Z8R9_METPB
          Length = 119

 Score =  101 bits (252), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 4   VLGVILGGLLLLPVVSNAADAQKAAD--NKKPVNSWTCEDFLAVDESFQPTAVGFAEALN 61
            + V+L   L+    S    A K  +    KP+   TCE+F   +++F+P  V +A    
Sbjct: 13  AIAVVLSAGLVQAETSGGKSADKHQEKLASKPLEKVTCEEFNGFEDTFKPKVVAWAAGYK 72

Query: 62  NKDKPEDAV-LDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
              K  DAV +D+ G+  VTP I + C +   A+   K+ GE  K+
Sbjct: 73  QGQKKPDAVAIDIAGVEKVTPLIAEECRKAPAASLWSKIDGELKKV 118


>UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D607_LARHH
          Length = 105

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 55/80 (68%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           KKPV+ WTCE+FL +D+ F+P AV F+E LN K +P DAV+D  G   VTP +V  C +D
Sbjct: 26  KKPVSQWTCEEFLTLDDQFKPNAVYFSEGLNKKHQPVDAVMDETGALKVTPMVVTECQKD 85

Query: 91  KQANFKDKVKGEWDKIKKDM 110
           ++A+F  K+K  W  I++ M
Sbjct: 86  RKASFWSKLKTTWQHIEQKM 105


>UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KVV4_BORA1
          Length = 117

 Score =   99 bits (247), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK++  +      L     A      AD KKP+  W C D+L ++ES++P A+GFAEA+
Sbjct: 1   MKKIIISLSIAAATLSFSGTA-----LADAKKPMPLWQCSDYLQLNESYRPVALGFAEAV 55

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
           N K KPED V+D++GIA +TP +V  C ++ +    D +       
Sbjct: 56  NRKGKPEDDVVDIEGIAQITPTLVTYCQENPKVALTDALAQTKANA 101


>UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KWS9_BORA1
          Length = 98

 Score = 98.0 bits (242), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 6/100 (6%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK     +  + +L + S A  A   AD KKPV  W C D+L V+E+++PTA+GFAEA+
Sbjct: 1   MKKA----MLAVTMLGLASLAGAAH--ADTKKPVQLWLCSDYLEVNETYRPTALGFAEAV 54

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVK 100
           N K K EDAV+D++GI  + P+++  C ++ +   +D + 
Sbjct: 55  NKKGKVEDAVVDLEGIEKIKPSLLTYCKENPKIALRDALD 94


>UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMD7_BURGB
          Length = 113

 Score = 83.0 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK+    +   L     +N A AQ AA    P     C DF  +D++++P  + +A  +
Sbjct: 1   MKKITMWYMAAALAGIATANVAFAQTAAKTISP-AKMVCADFETLDDAYKPAVIYWATGV 59

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVK 100
           +     E   + +     V   + + C    +    DK++
Sbjct: 60  DKLGVRETDQITIDTAHPVAEQVTEECKATPKVKIVDKIR 99


>UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4E4_LARHH
          Length = 110

 Score = 82.6 bits (202), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 36  SWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANF 95
            WTC+DFL +DESF+P  V +AE  NNK KP+ A++DVQG+  + P +V  C        
Sbjct: 38  KWTCQDFLDLDESFKPKVVYWAEGFNNKGKPDAAMVDVQGVEKIIPVVVDQCKLKPTEKL 97

Query: 96  KDKVKG 101
              +K 
Sbjct: 98  MKIMKS 103


>UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CY27_9VIBR
          Length = 116

 Score = 81.0 bits (198), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           M  ++ ++       P  +      +        ++ TC +FL +D    P  +G+  A 
Sbjct: 1   MFSLVTILAYAANAQPENTGEVTLSQPIATASFESTMTCSEFLELDYDLMPVTLGYLVAW 60

Query: 61  NNKDKPEDAVLDVQGIATV-TPAIVQACTQDKQANFKDKVKGEWDKIKKD 109
           N+K   E  V D+  +  +    IV  C +   A     V  +    K +
Sbjct: 61  NHKSNSEVQVFDITQLDAIEIDEIVDQCHKAPAARVHKVVAKQLADAKSE 110


>UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1TIB2_ACIAC
          Length = 134

 Score = 73.7 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           +KP+   TC D++ +DE+ +P  + +A       K E AV +   I  + P + Q C+  
Sbjct: 48  RKPLVKTTCSDYVGMDETVKPKFIYYAVGHTQGGKKE-AVFEEDAIEKIKPELDQYCSVH 106

Query: 91  KQANFKDKV 99
              +   KV
Sbjct: 107 LTKSAYAKV 115


>UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2PVU4_PROST
          Length = 49

 Score = 51.0 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 33 PVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
          PV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 8  PVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 42


>UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=Q89I73_BRAJA
          Length = 101

 Score = 45.6 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MK +L ++    L L  +   A        K  +++ TC  FL   E      + + +  
Sbjct: 5   MKTMLSILFAAALSLSSMPAHA-------VKWDLSTMTCRQFLESGEDNIAVVLTWMDGW 57

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
             K   ++A++D +            C ++   +          K
Sbjct: 58  -YKGDEDNAIIDTEVFIENAKKFGAYCGKNPTVSVVTAADEILGK 101


>UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepID=A1JKE6_YERE8
          Length = 110

 Score = 41.8 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 35  NSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQAN 94
           +  TC++FL ++       V +    + + K  D V   +    VTP +V+ C +  ++ 
Sbjct: 35  SDMTCKEFLDLNPKSFTPVVYWVLNDDTQYKKGDYVDLHETDTIVTPKVVEVCKKAPESK 94

Query: 95  FKDKVKGEWDKIKKDM 110
             +  +      KK M
Sbjct: 95  LSEIKQDILGFAKKHM 110


>UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=HDEB_ECOL6
          Length = 108

 Score = 39.4 bits (90), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 5  LGVILGGLLLLPVVS--NAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNN 62
          +  +    + +  V+  +  +AQ A    +     TC++F+ ++         +      
Sbjct: 3  ISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEET 62

Query: 63 KDKPEDAVLDVQGIATVTPAIVQACTQDKQANFK 96
            K  D V   +   T  P +++ C ++ Q N  
Sbjct: 63 VYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLY 96


>UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZDS4_EDWTE
          Length = 120

 Score = 39.4 bits (90), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 4   VLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNK 63
           V+ + L   +L  +    A   +AA    P  + TC++F+ ++         +    +  
Sbjct: 15  VMKMTLLAAVLGTLTLGCASLAQAATETTP-QNMTCKEFVNLNPKAMTPVAFWMLNKDTD 73

Query: 64  DKPEDAVLDVQGIATVT-PAIVQACTQDKQANFKDK 98
            K  D V D   + TV  P +++ C Q  Q    D 
Sbjct: 74  YKGGDYV-DWNEVETVAVPQVMEVCKQHPQKKVMDI 108


>UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5XU12_KLEP3
          Length = 121

 Score = 39.4 bits (90), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
           ++ G+++L + S AA    A D  +  +   C+D+L +D       V +        +P 
Sbjct: 17  LMAGIIVLAISSVAAGKNIAPDEVRTRDMMRCQDYLQLDPRTWTPMVIWLMNDPFSLQPP 76

Query: 68  DAVLDVQGIATVTPAIVQACTQDKQANFKD 97
           +     +    +TP + + C Q+  A    
Sbjct: 77  EWTDFHEAELVLTPILTEICRQEPDAWLTS 106


>UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobacter youngae ATCC 29220
          RepID=UPI0001C33F4A
          Length = 108

 Score = 39.1 bits (89), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 6  GVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDK 65
           ++   +L+  V++  + A      +      TC++F+ +   ++ TA+ F     N D 
Sbjct: 5  MIVSAVMLMTFVMAPMSRAFATQATEAAPQDMTCKEFVDMSHQYK-TAIAFVIVNKNSDF 63

Query: 66 PEDAVLDVQGIATVT-PAIVQACTQDKQANF 95
            D  + +Q + TV  P ++  C Q      
Sbjct: 64 KGDDYVPLQEVETVAVPKMINLCHQRPDTKL 94


>UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein, repressed by H-NS
           n=1 Tax=Escherichia fergusonii ATCC 35469
           RepID=B7LQG7_ESCF3
          Length = 136

 Score = 39.1 bits (89), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 6   GVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDK 65
            ++  G +    ++NA  A  A++  K     +C++F+ ++         +        K
Sbjct: 37  TLVFLGAVAALSLANAQSALAASEMPK---DMSCQEFINLNPKAMTPVAWWMLHEETVYK 93

Query: 66  PEDAVLDVQGIATVTPAIVQACTQDKQANFK 96
             D V   +   T  P +++ C ++ + N  
Sbjct: 94  GGDTVTLNETDLTQIPQVIEYCKKNPEKNLY 124


>UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197C70E
          Length = 101

 Score = 38.3 bits (87), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVD-ESFQPTAVGFAEA 59
           MKK+   I   +    +  N    +    +  P    +C++++ ++ +S+ P A+  +  
Sbjct: 1   MKKIFIPICITVAT-SLSFNVLATENEGMHLTP-EKMSCQEYIDLNPQSWAPIAMWMSNQ 58

Query: 60  LNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
                  +   L  Q IA V P IV  C      + KD V  +
Sbjct: 59  TTQFKGGDFVSLSQQSIAEV-PLIVNFCKLHPNKSLKDYVSSK 100


>UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chroococcales
           RepID=B7JYP2_CYAP8
          Length = 106

 Score = 38.3 bits (87), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVN----SWTCEDFLAVDESFQPTAVGF 56
           MK++  ++   +L   +      + +A +N   +       TC +        +   + F
Sbjct: 1   MKRIKALLSILVLTTVISGVGTSSSQAQENSGEMTVNLMEVTCRELFKASAEDKDLILVF 60

Query: 57  AEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
              L    K    V+D   +   T  I   C  + +A      +  
Sbjct: 61  YHGLVT-AKKNQMVIDRTQLEQATDKITDYCIDNPKATLMTVFEKY 105


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacte...   119   3e-26
UniRef50_B7LQG8 Stress response protein, acid-resistance protein...   110   1e-23
UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio ...   101   6e-21
UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella Re...   100   2e-20
UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Provide...   100   2e-20
UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio ...   100   3e-20
UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=...    99   5e-20
UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacter...    98   1e-19
UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    97   2e-19
UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=...    95   7e-19
UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=...    90   2e-17
UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    81   1e-14
UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 Re...    79   4e-14
UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovo...    71   8e-12
UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Provide...    49   3e-05

Sequences not found previously or not previously below threshold:

UniRef50_B8HR08 Putative uncharacterized protein n=1 Tax=Cyanoth...    46   3e-04
UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepI...    44   0.001
UniRef50_B7KF25 Putative uncharacterized protein n=1 Tax=Cyanoth...    42   0.008
UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein...    41   0.011
UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=H...    40   0.022
UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chrooco...    39   0.035
UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    39   0.043
UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijeri...    39   0.054

>UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacteriaceae
           RepID=HDEA_ECO57
          Length = 110

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL
Sbjct: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM
Sbjct: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110


>UniRef50_B7LQG8 Stress response protein, acid-resistance protein n=1
           Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG8_ESCF3
          Length = 127

 Score =  110 bits (275), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/110 (79%), Positives = 102/110 (92%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK + ++LGGLLL+PV+SNAA+ QKAADN+KPVNSWTCEDFLA+D +FQPTAVGFAEAL
Sbjct: 18  MKKAISILLGGLLLMPVISNAAETQKAADNQKPVNSWTCEDFLALDATFQPTAVGFAEAL 77

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           N KDKPEDAV+DVQGI TVTPAIVQACTQDK+A+FK+K +GEW KIKKD+
Sbjct: 78  NKKDKPEDAVMDVQGIETVTPAIVQACTQDKKASFKEKAQGEWAKIKKDL 127


>UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NTA9_9VIBR
          Length = 107

 Score =  101 bits (252), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKK--PVNSWTCEDFLAVDESFQPTAVGFAE 58
           MKK   V++   +   V  ++  +    ++++   V+  TCE F  ++   QP  + +  
Sbjct: 1   MKKPFTVLILAAVFGVVGYSSVKSYAECEDQEILSVDKMTCEQFNELELQTQPVVMEYLL 60

Query: 59  ALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
           + N        +++  GI      + Q C         D V  E
Sbjct: 61  SWNYNTDEVAVIIESNGIEAYIDELAQQCRDTPDIMLHDIVVDE 104


>UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella RepID=HDEA_BRUA2
          Length = 114

 Score =  100 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 58/93 (62%)

Query: 14  LLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDV 73
               ++ +A   K    KK V+  TCEDF  ++ESF+PT VG+    N K K EDAV+DV
Sbjct: 21  SGGAMAESAKTHKTDMAKKKVSELTCEDFNGLEESFKPTVVGWVVGFNKKGKEEDAVIDV 80

Query: 74  QGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
            GI TVTPAI++AC Q+ +A+F  K + E  K+
Sbjct: 81  DGIETVTPAIIEACKQEPKASFWKKAEAELKKV 113


>UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Providencia
           RepID=B2PWI3_PROST
          Length = 113

 Score =  100 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
           +  G++ + +++ +A A     + KPV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 18  LFAGIITMSLMATSAFA---TTDTKPVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 74

Query: 68  DAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
           D  L++ GI TVTP IV AC +  + +F  KV+    K
Sbjct: 75  DPTLNISGIETVTPLIVDACKKAPKESFIQKVEEYLKK 112


>UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CY27_9VIBR
          Length = 116

 Score = 99.6 bits (246), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           M  ++ ++       P  +      +        ++ TC +FL +D    P  +G+  A 
Sbjct: 1   MFSLVTILAYAANAQPENTGEVTLSQPIATASFESTMTCSEFLELDYDLMPVTLGYLVAW 60

Query: 61  NNKDKPEDAVLDVQGIATV-TPAIVQACTQDKQANFKDKVKGEWDKIKKD 109
           N+K   E  V D+  +  +    IV  C +   A     V  +    K +
Sbjct: 61  NHKSNSEVQVFDITQLDAIEIDEIVDQCHKAPAARVHKVVAKQLADAKSE 110


>UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KVV4_BORA1
          Length = 117

 Score = 98.8 bits (244), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK++  +      L     A      AD KKP+  W C D+L ++ES++P A+GFAEA+
Sbjct: 1   MKKIIISLSIAAATLSFSGTA-----LADAKKPMPLWQCSDYLQLNESYRPVALGFAEAV 55

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
           N K KPED V+D++GIA +TP +V  C ++ +    D +       
Sbjct: 56  NRKGKPEDDVVDIEGIAQITPTLVTYCQENPKVALTDALAQTKANA 101


>UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacterium
           RepID=B1Z8R9_METPB
          Length = 119

 Score = 97.6 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 4   VLGVILGGLLLLPVVSNAADAQKAAD--NKKPVNSWTCEDFLAVDESFQPTAVGFAEALN 61
            + V+L   L+    S    A K  +    KP+   TCE+F   +++F+P  V +A    
Sbjct: 13  AIAVVLSAGLVQAETSGGKSADKHQEKLASKPLEKVTCEEFNGFEDTFKPKVVAWAAGYK 72

Query: 62  NKDKPEDAV-LDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
              K  DAV +D+ G+  VTP I + C +   A+   K+ GE  K+
Sbjct: 73  QGQKKPDAVAIDIAGVEKVTPLIAEECRKAPAASLWSKIDGELKKV 118


>UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D607_LARHH
          Length = 105

 Score = 96.9 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 55/80 (68%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           KKPV+ WTCE+FL +D+ F+P AV F+E LN K +P DAV+D  G   VTP +V  C +D
Sbjct: 26  KKPVSQWTCEEFLTLDDQFKPNAVYFSEGLNKKHQPVDAVMDETGALKVTPMVVTECQKD 85

Query: 91  KQANFKDKVKGEWDKIKKDM 110
           ++A+F  K+K  W  I++ M
Sbjct: 86  RKASFWSKLKTTWQHIEQKM 105


>UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KWS9_BORA1
          Length = 98

 Score = 94.9 bits (234), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 6/100 (6%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK     +  + +L + S A  A   AD KKPV  W C D+L V+E+++PTA+GFAEA+
Sbjct: 1   MKKA----MLAVTMLGLASLAGAAH--ADTKKPVQLWLCSDYLEVNETYRPTALGFAEAV 54

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVK 100
           N K K EDAV+D++GI  + P+++  C ++ +   +D + 
Sbjct: 55  NKKGKVEDAVVDLEGIEKIKPSLLTYCKENPKIALRDALD 94


>UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=Q89I73_BRAJA
          Length = 101

 Score = 90.3 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MK +L ++    L L  +   A        K  +++ TC  FL   E      + + +  
Sbjct: 5   MKTMLSILFAAALSLSSMPAHA-------VKWDLSTMTCRQFLESGEDNIAVVLTWMDGW 57

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
             K   ++A++D +            C ++   +          K
Sbjct: 58  -YKGDEDNAIIDTEVFIENAKKFGAYCGKNPTVSVVTAADEILGK 101


>UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4E4_LARHH
          Length = 110

 Score = 80.7 bits (197), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 36  SWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANF 95
            WTC+DFL +DESF+P  V +AE  NNK KP+ A++DVQG+  + P +V  C        
Sbjct: 38  KWTCQDFLDLDESFKPKVVYWAEGFNNKGKPDAAMVDVQGVEKIIPVVVDQCKLKPTEKL 97

Query: 96  KDKVKG 101
              +K 
Sbjct: 98  MKIMKS 103


>UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMD7_BURGB
          Length = 113

 Score = 79.2 bits (193), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK+    +   L     +N A AQ AA    P     C DF  +D++++P  + +A  +
Sbjct: 1   MKKITMWYMAAALAGIATANVAFAQTAAKTISP-AKMVCADFETLDDAYKPAVIYWATGV 59

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVK 100
           +     E   + +     V   + + C    +    DK++
Sbjct: 60  DKLGVRETDQITIDTAHPVAEQVTEECKATPKVKIVDKIR 99


>UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1TIB2_ACIAC
          Length = 134

 Score = 71.5 bits (173), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           +KP+   TC D++ +DE+ +P  + +A       K E AV +   I  + P + Q C+  
Sbjct: 48  RKPLVKTTCSDYVGMDETVKPKFIYYAVGHTQGGKKE-AVFEEDAIEKIKPELDQYCSVH 106

Query: 91  KQANFKDKV 99
              +   KV
Sbjct: 107 LTKSAYAKV 115


>UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2PVU4_PROST
          Length = 49

 Score = 49.5 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 33 PVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
          PV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 8  PVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 42


>UniRef50_B8HR08 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HR08_CYAP4
          Length = 109

 Score = 46.0 bits (107), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 2   KKVLGVILGGLLLLPVVSNAADAQKAADNKK--PVNSWTCEDFLAVDESFQPTAVGFAEA 59
           K +L ++    L+    S AA  Q    + +   +    C +FL +D   Q   + F   
Sbjct: 4   KHILSIVALLTLMGEGFSPAAYGQNRIKSTEVITLTEINCREFLKMDSDEQDLMLTFLHG 63

Query: 60  LNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
                K     +DV  +   + AIV  C  + Q      V   
Sbjct: 64  FI-NGKTNQTTIDVPKLTQASDAIVDYCISNPQTILISVVDQI 105


>UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepID=A1JKE6_YERE8
          Length = 110

 Score = 44.1 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 35  NSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQAN 94
           +  TC++FL ++       V +    + + K  D V   +    VTP +V+ C +  ++ 
Sbjct: 35  SDMTCKEFLDLNPKSFTPVVYWVLNDDTQYKKGDYVDLHETDTIVTPKVVEVCKKAPESK 94

Query: 95  FKDKVKGEWDKIKKDM 110
             +  +      KK M
Sbjct: 95  LSEIKQDILGFAKKHM 110


>UniRef50_B7KF25 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KF25_CYAP7
          Length = 111

 Score = 41.8 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 11/110 (10%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKP--------VNSWTCEDFLAVDESFQPT 52
           M K    +L   L L    +      A DN  P         +   CE  L +D   +  
Sbjct: 1   MMKKFSWLL--ALTLCFAESVVLRSYAQDNAIPNSAASSVDFSKIDCETLLKMDGDERDY 58

Query: 53  AVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
            + F +      +    ++D    A  T  ++  C  +         +  
Sbjct: 59  TIIFFQGF-MSGRRNTMIVDELAFARATDEVIDYCVDNPNDRVISVFEKY 107


>UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein, repressed by H-NS
           n=1 Tax=Escherichia fergusonii ATCC 35469
           RepID=B7LQG7_ESCF3
          Length = 136

 Score = 41.0 bits (94), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 1   MKKVL---GVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFA 57
           MK +     ++  G +    ++NA  A  A++  K     +C++F+ ++         + 
Sbjct: 29  MKSLSLRKTLVFLGAVAALSLANAQSALAASEMPKD---MSCQEFINLNPKAMTPVAWWM 85

Query: 58  EALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKD 97
                  K  D V   +   T  P +++ C ++ + N   
Sbjct: 86  LHEETVYKGGDTVTLNETDLTQIPQVIEYCKKNPEKNLYT 125


>UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=HDEB_ECOL6
          Length = 108

 Score = 40.3 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 7  VILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKP 66
          + +G +  L +     +AQ A    +     TC++F+ ++         +        K 
Sbjct: 11 IFMGAVAALSL----VNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKG 66

Query: 67 EDAVLDVQGIATVTPAIVQACTQDKQANFKD 97
           D V   +   T  P +++ C ++ Q N   
Sbjct: 67 GDTVTLNETDLTQIPKVIEYCKKNPQKNLYT 97


>UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chroococcales
           RepID=B7JYP2_CYAP8
          Length = 106

 Score = 39.5 bits (90), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVN----SWTCEDFLAVDESFQPTAVGF 56
           MK++  ++   +L   +      + +A +N   +       TC +        +   + F
Sbjct: 1   MKRIKALLSILVLTTVISGVGTSSSQAQENSGEMTVNLMEVTCRELFKASAEDKDLILVF 60

Query: 57  AEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
              L    K    V+D   +   T  I   C  + +A      +  
Sbjct: 61  YHGLV-TAKKNQMVIDRTQLEQATDKITDYCIDNPKATLMTVFEKY 105


>UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZDS4_EDWTE
          Length = 120

 Score = 39.1 bits (89), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 3   KVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNN 62
            V+ + L   +L  +    A   +AA    P  + TC++F+ ++         +    + 
Sbjct: 14  TVMKMTLLAAVLGTLTLGCASLAQAATETTP-QNMTCKEFVNLNPKAMTPVAFWMLNKDT 72

Query: 63  KDKPEDAVLDVQGIATVT-PAIVQACTQDKQANFKDK 98
             K  D V D   + TV  P +++ C Q  Q    D 
Sbjct: 73  DYKGGDYV-DWNEVETVAVPQVMEVCKQHPQKKVMDI 108


>UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp.
           indica ATCC 9039 RepID=B2ICQ5_BEII9
          Length = 96

 Score = 38.7 bits (88), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 12  LLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVL 71
            L    +   +     A     ++  TC+ FL  D         +     +  K   + +
Sbjct: 5   ALFAAAMMTISAIPAKAQVMIDMSLVTCKQFLDSDAERAAILASWMGGYFSASK-NLSTV 63

Query: 72  DVQGIATVTPAIVQACTQDKQANFKDKVKG 101
           D++ +   T  ++  C  +K       V+ 
Sbjct: 64  DLRYVERNTKKVINYCEANKSKTLMSAVEK 93


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacte...   119   3e-26
UniRef50_B7LQG8 Stress response protein, acid-resistance protein...   111   7e-24
UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella Re...   100   1e-20
UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio ...    99   3e-20
UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=...    99   4e-20
UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Provide...    99   4e-20
UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio ...    98   6e-20
UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacter...    98   8e-20
UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    95   5e-19
UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=...    95   8e-19
UniRef50_B8HR08 Putative uncharacterized protein n=1 Tax=Cyanoth...    93   3e-18
UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=...    92   6e-18
UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepI...    83   4e-15
UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    81   8e-15
UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 Re...    80   3e-14
UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovo...    70   3e-11
UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Provide...    48   7e-05

Sequences not found previously or not previously below threshold:

UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    56   3e-07
UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=H...    56   3e-07
UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein...    56   3e-07
UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B...    53   3e-06
UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chrooco...    51   8e-06
UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5X...    51   2e-05
UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsie...    50   2e-05
UniRef50_B7KF25 Putative uncharacterized protein n=1 Tax=Cyanoth...    50   3e-05
UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    49   5e-05
UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providenc...    46   2e-04
UniRef50_B4WRX0 Putative uncharacterized protein n=1 Tax=Synecho...    46   3e-04
UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. ...    46   3e-04
UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobact...    46   4e-04
UniRef50_B1WSC5 Putative uncharacterized protein n=1 Tax=Cyanoth...    43   0.002
UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Provide...    43   0.003
UniRef50_A3IY06 Putative uncharacterized protein n=1 Tax=Cyanoth...    42   0.005
UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijeri...    42   0.005
UniRef50_B2ICQ4 Putative uncharacterized protein n=1 Tax=Beijeri...    41   0.009

>UniRef50_P0AET0 Chaperone-like protein hdeA n=59 Tax=Enterobacteriaceae
           RepID=HDEA_ECO57
          Length = 110

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL
Sbjct: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM
Sbjct: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110


>UniRef50_B7LQG8 Stress response protein, acid-resistance protein n=1
           Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG8_ESCF3
          Length = 127

 Score =  111 bits (277), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 87/110 (79%), Positives = 102/110 (92%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK + ++LGGLLL+PV+SNAA+ QKAADN+KPVNSWTCEDFLA+D +FQPTAVGFAEAL
Sbjct: 18  MKKAISILLGGLLLMPVISNAAETQKAADNQKPVNSWTCEDFLALDATFQPTAVGFAEAL 77

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM 110
           N KDKPEDAV+DVQGI TVTPAIVQACTQDK+A+FK+K +GEW KIKKD+
Sbjct: 78  NKKDKPEDAVMDVQGIETVTPAIVQACTQDKKASFKEKAQGEWAKIKKDL 127


>UniRef50_Q2YK18 Chaperone-like protein hdeA n=35 Tax=Brucella RepID=HDEA_BRUA2
          Length = 114

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 58/93 (62%)

Query: 14  LLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDV 73
               ++ +A   K    KK V+  TCEDF  ++ESF+PT VG+    N K K EDAV+DV
Sbjct: 21  SGGAMAESAKTHKTDMAKKKVSELTCEDFNGLEESFKPTVVGWVVGFNKKGKEEDAVIDV 80

Query: 74  QGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
            GI TVTPAI++AC Q+ +A+F  K + E  K+
Sbjct: 81  DGIETVTPAIIEACKQEPKASFWKKAEAELKKV 113


>UniRef50_C9NTA9 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NTA9_9VIBR
          Length = 107

 Score = 99.2 bits (245), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKK--PVNSWTCEDFLAVDESFQPTAVGFAE 58
           MKK   V++   +   V  ++  +    ++++   V+  TCE F  ++   QP  + +  
Sbjct: 1   MKKPFTVLILAAVFGVVGYSSVKSYAECEDQEILSVDKMTCEQFNELELQTQPVVMEYLL 60

Query: 59  ALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
           + N        +++  GI      + Q C         D V  E
Sbjct: 61  SWNYNTDEVAVIIESNGIEAYIDELAQQCRDTPDIMLHDIVVDE 104


>UniRef50_Q2KVV4 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KVV4_BORA1
          Length = 117

 Score = 98.8 bits (244), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK++  +      L     A      AD KKP+  W C D+L ++ES++P A+GFAEA+
Sbjct: 1   MKKIIISLSIAAATLSFSGTA-----LADAKKPMPLWQCSDYLQLNESYRPVALGFAEAV 55

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
           N K KPED V+D++GIA +TP +V  C ++ +    D +       
Sbjct: 56  NRKGKPEDDVVDIEGIAQITPTLVTYCQENPKVALTDALAQTKANA 101


>UniRef50_B2PWI3 Putative uncharacterized protein n=6 Tax=Providencia
           RepID=B2PWI3_PROST
          Length = 113

 Score = 98.8 bits (244), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
           +  G++ + +++ +A A     + KPV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 18  LFAGIITMSLMATSAFA---TTDTKPVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 74

Query: 68  DAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
           D  L++ GI TVTP IV AC +  + +F  KV+    K
Sbjct: 75  DPTLNISGIETVTPLIVDACKKAPKESFIQKVEEYLKK 112


>UniRef50_A6CY27 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CY27_9VIBR
          Length = 116

 Score = 98.4 bits (243), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           M  ++ ++       P  +      +        ++ TC +FL +D    P  +G+  A 
Sbjct: 1   MFSLVTILAYAANAQPENTGEVTLSQPIATASFESTMTCSEFLELDYDLMPVTLGYLVAW 60

Query: 61  NNKDKPEDAVLDVQGIATV-TPAIVQACTQDKQANFKDKVKGEWDKIKKD 109
           N+K   E  V D+  +  +    IV  C +   A     V  +    K +
Sbjct: 61  NHKSNSEVQVFDITQLDAIEIDEIVDQCHKAPAARVHKVVAKQLADAKSE 110


>UniRef50_B1Z8R9 HNS-dependent expression A n=4 Tax=Methylobacterium
           RepID=B1Z8R9_METPB
          Length = 119

 Score = 98.0 bits (242), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 4   VLGVILGGLLLLPVVSNAADAQKAAD--NKKPVNSWTCEDFLAVDESFQPTAVGFAEALN 61
            + V+L   L+    S    A K  +    KP+   TCE+F   +++F+P  V +A    
Sbjct: 13  AIAVVLSAGLVQAETSGGKSADKHQEKLASKPLEKVTCEEFNGFEDTFKPKVVAWAAGYK 72

Query: 62  NKDKPEDAV-LDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
              K  DAV +D+ G+  VTP I + C +   A+   K+ GE  K+
Sbjct: 73  QGQKKPDAVAIDIAGVEKVTPLIAEECRKAPAASLWSKIDGELKKV 118


>UniRef50_C1D607 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D607_LARHH
          Length = 105

 Score = 95.3 bits (235), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 55/80 (68%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           KKPV+ WTCE+FL +D+ F+P AV F+E LN K +P DAV+D  G   VTP +V  C +D
Sbjct: 26  KKPVSQWTCEEFLTLDDQFKPNAVYFSEGLNKKHQPVDAVMDETGALKVTPMVVTECQKD 85

Query: 91  KQANFKDKVKGEWDKIKKDM 110
           ++A+F  K+K  W  I++ M
Sbjct: 86  RKASFWSKLKTTWQHIEQKM 105


>UniRef50_Q2KWS9 Acid-resistance protein, (Putative chaperone) n=1 Tax=Bordetella
           avium 197N RepID=Q2KWS9_BORA1
          Length = 98

 Score = 95.0 bits (234), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 6/104 (5%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK     +  + +L + S A  A   AD KKPV  W C D+L V+E+++PTA+GFAEA+
Sbjct: 1   MKKA----MLAVTMLGLASLAGAAH--ADTKKPVQLWLCSDYLEVNETYRPTALGFAEAV 54

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWD 104
           N K K EDAV+D++GI  + P+++  C ++ +   +D +     
Sbjct: 55  NKKGKVEDAVVDLEGIEKIKPSLLTYCKENPKIALRDALDNVRK 98


>UniRef50_B8HR08 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HR08_CYAP4
          Length = 109

 Score = 92.6 bits (228), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 2   KKVLGVILGGLLLLPVVSNAADAQKAADNKK--PVNSWTCEDFLAVDESFQPTAVGFAEA 59
           K +L ++    L+    S AA  Q    + +   +    C +FL +D   Q   + F   
Sbjct: 4   KHILSIVALLTLMGEGFSPAAYGQNRIKSTEVITLTEINCREFLKMDSDEQDLMLTFLHG 63

Query: 60  LNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
                K     +DV  +   + AIV  C  + Q      V   
Sbjct: 64  FI-NGKTNQTTIDVPKLTQASDAIVDYCISNPQTILISVVDQI 105


>UniRef50_Q89I73 Bll5766 protein n=3 Tax=Bradyrhizobiaceae RepID=Q89I73_BRAJA
          Length = 101

 Score = 91.9 bits (226), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MK +L ++    L L  +   A        K  +++ TC  FL   E      + + +  
Sbjct: 5   MKTMLSILFAAALSLSSMPAHA-------VKWDLSTMTCRQFLESGEDNIAVVLTWMDGW 57

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDK 105
             K   ++A++D +            C ++   +          K
Sbjct: 58  -YKGDEDNAIIDTEVFIENAKKFGAYCGKNPTVSVVTAADEILGK 101


>UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepID=A1JKE6_YERE8
          Length = 110

 Score = 82.6 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 35  NSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQAN 94
           +  TC++FL ++       V +    + + K  D V   +    VTP +V+ C +  ++ 
Sbjct: 35  SDMTCKEFLDLNPKSFTPVVYWVLNDDTQYKKGDYVDLHETDTIVTPKVVEVCKKAPESK 94

Query: 95  FKDKVKGEWDKIKKDM 110
             +  +      KK M
Sbjct: 95  LSEIKQDILGFAKKHM 110


>UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4E4_LARHH
          Length = 110

 Score = 81.5 bits (199), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 36  SWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANF 95
            WTC+DFL +DESF+P  V +AE  NNK KP+ A++DVQG+  + P +V  C        
Sbjct: 38  KWTCQDFLDLDESFKPKVVYWAEGFNNKGKPDAAMVDVQGVEKIIPVVVDQCKLKPTEKL 97

Query: 96  KDKVKG 101
              +K 
Sbjct: 98  MKIMKS 103


>UniRef50_C5AMD7 HdeA protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMD7_BURGB
          Length = 113

 Score = 79.6 bits (194), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK+    +   L     +N A AQ AA    P     C DF  +D++++P  + +A  +
Sbjct: 1   MKKITMWYMAAALAGIATANVAFAQTAAKTISP-AKMVCADFETLDDAYKPAVIYWATGV 59

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVK 100
           +     E   + +     V   + + C    +    DK++
Sbjct: 60  DKLGVRETDQITIDTAHPVAEQVTEECKATPKVKIVDKIR 99


>UniRef50_A1TIB2 Putative uncharacterized protein n=2 Tax=Acidovorax
           RepID=A1TIB2_ACIAC
          Length = 134

 Score = 69.5 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 31  KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQD 90
           +KP+   TC D++ +DE+ +P  + +A       K E AV +   I  + P + Q C+  
Sbjct: 48  RKPLVKTTCSDYVGMDETVKPKFIYYAVGHTQGGKKE-AVFEEDAIEKIKPELDQYCSVH 106

Query: 91  KQANFKDKV 99
              +   KV
Sbjct: 107 LTKSAYAKV 115


>UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZDS4_EDWTE
          Length = 120

 Score = 56.4 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 3   KVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNN 62
            V+ + L   +L  +    A   +AA    P  + TC++F+ ++         +    + 
Sbjct: 14  TVMKMTLLAAVLGTLTLGCASLAQAATETTP-QNMTCKEFVNLNPKAMTPVAFWMLNKDT 72

Query: 63  KDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEW 103
             K  D V   +      P +++ C Q  Q    D      
Sbjct: 73  DYKGGDYVDWNEVETVAVPQVMEVCKQHPQKKVMDIKGQIK 113


>UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=HDEB_ECOL6
          Length = 108

 Score = 56.4 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 7  VILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKP 66
          + +G +  L +     +AQ A    +     TC++F+ ++         +        K 
Sbjct: 11 IFMGAVAALSL----VNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKG 66

Query: 67 EDAVLDVQGIATVTPAIVQACTQDKQANFKD 97
           D V   +   T  P +++ C ++ Q N   
Sbjct: 67 GDTVTLNETDLTQIPKVIEYCKKNPQKNLYT 97


>UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein, repressed by H-NS
           n=1 Tax=Escherichia fergusonii ATCC 35469
           RepID=B7LQG7_ESCF3
          Length = 136

 Score = 56.1 bits (133), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 1   MKKVL---GVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFA 57
           MK +     ++  G +    ++NA  A  A++  K     +C++F+ ++         + 
Sbjct: 29  MKSLSLRKTLVFLGAVAALSLANAQSALAASEMPK---DMSCQEFINLNPKAMTPVAWWM 85

Query: 58  EALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKG 101
                  K  D V   +   T  P +++ C ++ + N     + 
Sbjct: 86  LHEETVYKGGDTVTLNETDLTQIPQVIEYCKKNPEKNLYTFKEK 129


>UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B4T5V2_SALNS
          Length = 109

 Score = 53.0 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNS---WTCEDFLAVDESFQPTAVGFAEALNNKD 64
           +    +++  +  +     A D  K   +    +C++F+ ++         +    +   
Sbjct: 6   LATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFVDLNPQTMAPVAFWVLNEDEDF 65

Query: 65  KPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
           K  D V   +   T  P  V+ C ++ Q+           ++ K
Sbjct: 66  KGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDEIKKELSK 109


>UniRef50_B7JYP2 Putative uncharacterized protein n=3 Tax=Chroococcales
           RepID=B7JYP2_CYAP8
          Length = 106

 Score = 51.4 bits (121), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 2/103 (1%)

Query: 1   MKKVLGVILGGL-LLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEA 59
           +K +L +++    +     S++   + + +    +   TC +        +   + F   
Sbjct: 4   IKALLSILVLTTVISGVGTSSSQAQENSGEMTVNLMEVTCRELFKASAEDKDLILVFYHG 63

Query: 60  LNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
           L    K    V+D   +   T  I   C  + +A      +  
Sbjct: 64  LVT-AKKNQMVIDRTQLEQATDKITDYCIDNPKATLMTVFEKY 105


>UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5XU12_KLEP3
          Length = 121

 Score = 50.7 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 8   ILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
           ++ G+++L + S AA    A D  +  +   C+D+L +D       V +        +P 
Sbjct: 17  LMAGIIVLAISSVAAGKNIAPDEVRTRDMMRCQDYLQLDPRTWTPMVIWLMNDPFSLQPP 76

Query: 68  DAVLDVQGIATVTPAIVQACTQDKQANFKD 97
           +     +    +TP + + C Q+  A    
Sbjct: 77  EWTDFHEAELVLTPILTEICRQEPDAWLTS 106


>UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsiella
           RepID=C4X048_KLEPN
          Length = 107

 Score = 49.9 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 7   VILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKP 66
           V+        ++++ A A +    +    + TC++F+ ++         +    N     
Sbjct: 14  VLTVAATTFCLMTSPAFAVEETTPQ----NMTCQEFMDMNPKSMTPVAFWVVNRNTDFSG 69

Query: 67  EDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWD 104
            D V   +      P ++Q C ++  A   D       
Sbjct: 70  GDYVDWHEVETVSVPKMLQECHKNPAAKLGDLSAVIKK 107


>UniRef50_B7KF25 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KF25_CYAP7
          Length = 111

 Score = 49.9 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 7/108 (6%)

Query: 1   MKKVLGVILGGLL------LLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAV 54
           M K    +L   L      +L   +       +A +    +   CE  L +D   +   +
Sbjct: 1   MMKKFSWLLALTLCFAESVVLRSYAQDNAIPNSAASSVDFSKIDCETLLKMDGDERDYTI 60

Query: 55  GFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
            F +      +    ++D    A  T  ++  C  +         +  
Sbjct: 61  IFFQGF-MSGRRNTMIVDELAFARATDEVIDYCVDNPNDRVISVFEKY 107


>UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZCI7_EDWTE
          Length = 110

 Score = 48.7 bits (114), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 30/96 (31%)

Query: 2  KKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALN 61
          K          L L +  NA   +          + TC +F  ++       + +    +
Sbjct: 4  KTTFMGGSVLALTLALAGNACAQELTMATVTTPETMTCHEFTQMNPKAMTPVMVWVVNKD 63

Query: 62 NKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKD 97
             K  D V   +    + P +++ C ++      +
Sbjct: 64 RDYKNGDYVDWQKVQTVMVPKVIKVCKKEPGKKIVE 99


>UniRef50_B2PVU4 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2PVU4_PROST
          Length = 49

 Score = 48.4 bits (113), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 33 PVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPE 67
          PV+ W CEDFL +D++F PTA+G AE +  K K E
Sbjct: 8  PVSQWKCEDFLVIDDNFYPTAIGAAEIVTQKGKVE 42


>UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providencia rettgeri DSM 1131
          RepID=UPI000197C70E
          Length = 101

 Score = 46.4 bits (108), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 1  MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
          MKK+  + +   +   +  N    +    +  P    +C++++ ++         +    
Sbjct: 1  MKKIF-IPICITVATSLSFNVLATENEGMHLTP-EKMSCQEYIDLNPQSWAPIAMWMSNQ 58

Query: 61 NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKV 99
            + K  D V   Q      P IV  C      + KD V
Sbjct: 59 TTQFKGGDFVSLSQQSIAEVPLIVNFCKLHPNKSLKDYV 97


>UniRef50_B4WRX0 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WRX0_9SYNE
          Length = 112

 Score = 46.4 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQ----------KAADNKKPVNSWTCEDFLAVDESFQ 50
           MKK+   IL   +    ++   ++Q           A  ++  + + TC DFL      Q
Sbjct: 1   MKKLSWFILSASVATLGITAYGNSQVIAQEETTVPAATVDQIDLEALTCRDFLKTPGDEQ 60

Query: 51  PTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKD 97
              + F          E   +D   +   + +IV  C  D +     
Sbjct: 61  TNLMIFMHGY-MSGVSETTTIDAPALVAASDSIVDGCIDDPEGTLLS 106


>UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MAE5_9ENTR
          Length = 96

 Score = 46.4 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 30/91 (32%)

Query: 14  LLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDV 73
           +  V++    A      +      TC++F+ + + ++          N+  K +D V   
Sbjct: 1   MTSVMAPMTRALATQATEAAPQDMTCKEFVDMSQQYKTAIAFVIVNKNSDFKGDDYVPLH 60

Query: 74  QGIATVTPAIVQACTQDKQANFKDKVKGEWD 104
           +      P +V+ C Q       +       
Sbjct: 61  EVETEAVPKMVKMCHQHPNTKLGELAVNLKG 91


>UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobacter youngae ATCC 29220
          RepID=UPI0001C33F4A
          Length = 108

 Score = 45.7 bits (106), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 33/92 (35%)

Query: 4  VLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNK 63
          +  ++   +L+  V++  + A      +      TC++F+ +   ++          N+ 
Sbjct: 3  IKMIVSAVMLMTFVMAPMSRAFATQATEAAPQDMTCKEFVDMSHQYKTAIAFVIVNKNSD 62

Query: 64 DKPEDAVLDVQGIATVTPAIVQACTQDKQANF 95
           K +D V   +      P ++  C Q      
Sbjct: 63 FKGDDYVPLQEVETVAVPKMINLCHQRPDTKL 94


>UniRef50_B1WSC5 Putative uncharacterized protein n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WSC5_CYAA5
          Length = 81

 Score = 43.3 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 25  QKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIV 84
             + D K  +N  +C + L +    +     F        K    V+D   +   T  I 
Sbjct: 4   DTSEDTKVELNQISCRELLKMPGKDKELTFIFFHGFMT-AKKNQMVIDRIALREATDKIT 62

Query: 85  QACTQDKQANFKDKVKGE 102
             C  +  +      +  
Sbjct: 63  DYCINNPDSMLMTAFEEY 80


>UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Providencia
           RepID=B2PWH8_PROST
          Length = 99

 Score = 43.0 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 24/67 (35%)

Query: 35  NSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQAN 94
              +C++F+ ++         +      + K  D V   +      P +V+ C +  +  
Sbjct: 31  EKMSCQEFINLNPQSWAPVALWVTNQETQFKGGDYVALTEQSVAEVPQLVEFCKKKPEGT 90

Query: 95  FKDKVKG 101
            +D +  
Sbjct: 91  LQDYLAS 97


>UniRef50_A3IY06 Putative uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3IY06_9CHRO
          Length = 107

 Score = 42.2 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 7   VILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKP 66
           +I+  L +    +  A  +     +  ++  TC++ L  +   +   +          K 
Sbjct: 13  IIVLSLFVGFSGNALAQTETPTVTRFNLSEVTCKNLLDANNFDRMAVLMMYWGFVA-GKE 71

Query: 67  EDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE 102
            +   D + +   T  ++  C +D        ++  
Sbjct: 72  NNLEFDSEKMQAATEQLMDVCVEDPDMTIFSAIESI 107


>UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp.
           indica ATCC 9039 RepID=B2ICQ5_BEII9
          Length = 96

 Score = 42.2 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 9   LGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPED 68
           L    ++ + +  A AQ   D    ++  TC+ FL  D         +     +  K   
Sbjct: 6   LFAAAMMTISAIPAKAQVMID----MSLVTCKQFLDSDAERAAILASWMGGYFSASK-NL 60

Query: 69  AVLDVQGIATVTPAIVQACTQDKQANFKDKVKG 101
           + +D++ +   T  ++  C  +K       V+ 
Sbjct: 61  STVDLRYVERNTKKVINYCEANKSKTLMSAVEK 93


>UniRef50_B2ICQ4 Putative uncharacterized protein n=1 Tax=Beijerinckia indica subsp.
           indica ATCC 9039 RepID=B2ICQ4_BEII9
          Length = 100

 Score = 41.4 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 1   MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLAVDESFQPTAVGFAEAL 60
           MKK     +   LL+P    +  AQ   D  +     TC+D+LA+          +    
Sbjct: 1   MKKSAIGFVLACLLVPA---SVQAQILVDTTR----ITCDDYLAMSADDSKIFSAWLSGW 53

Query: 61  NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               K     +D    A     + Q C  + + +    +    DK  K
Sbjct: 54  -FNQKAGYTTVDFDAYARNVANVKQWCASNPKESVMAGLTRAVDKAAK 100


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.306    0.115    0.281 

Lambda     K      H
   0.267   0.0362    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,231,995
Number of Sequences: 3077464
Number of extensions: 6284276
Number of successful extensions: 17993
Number of sequences better than 1.0e-01: 37
Number of HSP's better than  0.1 without gapping: 65
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 17907
Number of HSP's gapped (non-prelim): 91
length of query: 110
length of database: 1,040,396,356
effective HSP length: 78
effective length of query: 32
effective length of database: 800,354,164
effective search space: 25611333248
effective search space used: 25611333248
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 86 (37.9 bits)