17/01/2012 02:08:38 : INFO  : Run start: Tue Jan 17 02:08:38 GMT 2012
17/01/2012 02:08:38 : INFO  : Initialised job
17/01/2012 02:08:38 : INFO  : Renaming log file 'phyre2_20120117_020838.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/phyre_20120117_020838.log'
17/01/2012 02:08:38 : INFO  : Initialised job:
Sequence
>batch____
MAMACLCLANISWATVCANSTGVAEDEHYDLSNIFNSTNNQPGQIVVLPEKSGWVGVSAI
CPPGTLVNYTYRSYVTNFIVQETIDNYKYMQLHDYLLGAMSLVDSVMDIQFPPQNYIRMG
TDPNVSQNLPFGVMDSRLIFRLKVIRPFINMVEIPRQVMFTVYVTSTPYDPLVTPVYTIS
FGGRVEVPQNCELNAGQIVEFDFGDIGASLFSAAGPGNRPAGVMPQTKSIAVKCTNVAAQ
AYLTMRLEASAVSGQAMVSDNQDLGFIVADQNDTPITPNDLNSVIPFRLDAAAAANVTLR
AWPISITGQKPTEGPFSALGYLRVDYQ

17/01/2012 02:08:38 : INFO  : Checked sequence
17/01/2012 02:08:38 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 02:08:38 : INFO  : PSI-BLAST 3 iterations
17/01/2012 02:10:08 : INFO  : PSI-BLAST 5 iterations
17/01/2012 02:11:50 : INFO  : Finished PSI-BLAST
17/01/2012 02:11:50 : INFO  : Running Buildali to generate a3m file
17/01/2012 02:15:33 : INFO  : Converting to HMM
17/01/2012 02:15:34 : INFO  : Calibrating HMM
17/01/2012 02:15:43 : INFO  : Searching HMM database
17/01/2012 02:21:51 : INFO  : Finished buildali
17/01/2012 02:21:51 : INFO  : Predicting secondary structure
17/01/2012 02:21:52 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 02:21:52 : INFO  : Predicting Disordered regions
17/01/2012 02:21:52 : INFO  : Predicted Disorder (Disopred)
17/01/2012 02:21:52 : INFO  : Running memsat_svm check
17/01/2012 02:25:39 : INFO  : Running memsat_svm full
17/01/2012 02:31:44 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c334039bb9a7cd3b'
17/01/2012 02:31:44 : INFO  : Initialising fold library search
17/01/2012 02:31:44 : INFO  : Initialised search input
17/01/2012 02:31:44 : INFO  : Building Ensemble models
17/01/2012 02:31:44 : INFO  : Building hh.c2w07B_.model.1.pdb
17/01/2012 02:31:44 : INFO  : Building hh.c1klfP_.model.2.pdb
17/01/2012 02:31:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/hh.c1klfP_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/c1klfP_.2.pdb
17/01/2012 02:31:45 : INFO  : Building hh.d1n12a_.model.3.pdb
17/01/2012 02:31:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/hh.d1n12a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/d1n12a_.3.pdb
17/01/2012 02:31:45 : INFO  : Building hh.c3jwnL_.model.4.pdb
17/01/2012 02:31:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/hh.c3jwnL_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/c3jwnL_.4.pdb
17/01/2012 02:31:46 : INFO  : Building hh.c3jwnK_.model.5.pdb
17/01/2012 02:31:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/hh.c3jwnK_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/c3jwnK_.5.pdb
17/01/2012 02:31:46 : INFO  : Building hh.d2j2zb1.model.6.pdb
17/01/2012 02:31:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/hh.d2j2zb1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c334039bb9a7cd3b/d2j2zb1.6.pdb
17/01/2012 02:31:47 : INFO  : Building c2w07B_.1.pdb
17/01/2012 02:31:47 : INFO  : Building c1klfP_.2.pdb
17/01/2012 02:31:48 : INFO  : Building d1n12a_.3.pdb
17/01/2012 02:31:48 : INFO  : Building c3jwnL_.4.pdb
17/01/2012 02:31:49 : INFO  : Building c3jwnK_.5.pdb
17/01/2012 02:31:49 : INFO  : Building d2j2zb1.6.pdb
17/01/2012 02:31:49 : INFO  : Building c3jwnF_.7.pdb
17/01/2012 02:31:50 : INFO  : Building c3jwnE_.8.pdb
17/01/2012 02:31:50 : INFO  : Building c3bfwA_.9.pdb
17/01/2012 02:31:51 : INFO  : Building c2jmrA_.10.pdb
17/01/2012 02:31:51 : INFO  : Building d2uy6b1.11.pdb
17/01/2012 02:31:51 : INFO  : Building d1pdkb_.12.pdb
17/01/2012 02:31:52 : INFO  : Building c2jtyA_.13.pdb
17/01/2012 02:31:52 : INFO  : Building d1ze3h1.14.pdb
17/01/2012 02:31:52 : INFO  : Building c3bwuF_.15.pdb
17/01/2012 02:31:52 : INFO  : Building c2wmpB_.16.pdb
17/01/2012 02:31:53 : INFO  : Building d1p5vb_.17.pdb
17/01/2012 02:31:53 : INFO  : Building c3sd2A_.18.pdb
17/01/2012 02:31:53 : INFO  : Building c3isyA_.19.pdb
17/01/2012 02:31:54 : INFO  : Building c2wd6B_.20.pdb
17/01/2012 02:32:00 : INFO  : Finished HH model building
17/01/2012 02:32:00 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 02:32:05 : INFO  : html domain output complete ID 'c334039bb9a7cd3b'
17/01/2012 03:01:50 : INFO  : Run end  : Tue Jan 17 03:01:50 GMT 2012
