Phyre 2 alignment of P0ABZ6 with c3bmbB_

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Job Description | P0ABZ6
Confidence | 4.28% | Date | Thu Jan 5 11:16:47 GMT 2012
Rank | 63 | Aligned Residues | 39
% Identity | 18% | Template | c3bmbB_
PDB info | PDB header:rna binding protein | Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; | PDBTitle: crystal structure of a new rna polymerase interacting2 protein
Resolution | 1.91 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 348 | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . |  | . | . | . | . | . | 380 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | I | F | D | P | A | F | R | D | A | L | T | R | L | N | K | G | Q | M | S | A | P | V | H | S | S | F | G | . | W | H | L | I | E | L | L | D | T | R | N | V | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | V | M | A | P | V | G | A | A | L | L | G | L | R | V | G | D | S | I | H | . | W | E | L | P | G | G | V | A | T | H | L | E | V | L | E | L | E | Y | Q | P
Template Known Secondary structure |  |  | T | T | S |  |  |  |  |  |  | T | T |  | B | T | T |  |  |  |  | . |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |  | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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