Phyre 2 Results for P0ABZ6

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Email | l.a.kelley@imperial.ac.uk
Description | P0ABZ6
Date | Thu Jan 5 11:16:47 GMT 2012
Unique Job ID | c22629b8a1e2112e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1m5yB_
Top template information
PDB header:isomerase, cell cycle Chain: B: PDB Molecule:survival protein sura; PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding
Confidence and coverage
Confidence: | 100.0% | Coverage: | 88%
377 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | N | W | K | T | L | L | L | G | I | A | M | I | A | N | T | S | F | A | A | P | Q | V | V | D | K | V | A | A | V | V | N | N | G | V | V | L | E | S | D | V | D | G | L | M | Q | S | V | K | L | N | A | A | Q | A | R | Q | Q | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | D | D | A | T | L | R | H | Q | I | M | E | R | L | I | M | D | Q | I | I | L | Q | M | G | Q | K | M | G | V | K | I | S | D | E | Q | L | D | Q | A | I | A | N | I | A | K | Q | N | N | M | T | L | D | Q | M | R | S | R | L | A | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | G | L | N | Y | N | T | Y | R | N | Q | I | R | K | E | M | I | I | S | E | V | R | N | N | E | V | R | R | R | I | T | I | L | P | Q | E | V | E | S | L | A | Q | Q | V | G | N | Q | N | D | A | S | T | E | L | N | L | S | H | I | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | I | P | L | P | E | N | P | T | S | D | Q | V | N | E | A | E | S | Q | A | R | A | I | V | D | Q | A | R | N | G | A | D | F | G | K | L | A | I | A | H | S | A | D | Q | Q | A | L | N | G | G | Q | M | G | W | G | R | I | Q | E | L | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | G | I | F | A | Q | A | L | S | T | A | K | K | G | D | I | V | G | P | I | R | S | G | V | G | F | H | I | L | K | V | N | D | L | R | G | E | S | K | N | I | S | V | T | E | V | H | A | R | H | I | L | L | K | P | S | P | I | M | T | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | E | Q | A | R | V | K | L | E | Q | I | A | A | D | I | K | S | G | K | T | T | F | A | A | A | A | K | E | F | S | Q | D | P | G | S | A | N | Q | G | G | D | L | G | W | A | T | P | D | I | F | D | P | A | F | R | D | A | L | T | R | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | N | K | G | Q | M | S | A | P | V | H | S | S | F | G | W | H | L | I | E | L | L | D | T | R | N | V | D | K | T | D | A | A | Q | K | D | R | A | Y | R | M | L | M | N | R | K | F | S | E | E | A | A | S | W | M | Q | E | Q | R | A | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | .
Sequence |  | A | Y | V | K | I | L | S | N
Secondary structure |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1m5yB_ |

### PDB 1m5y chain B

Region: 25 - 427
Aligned: 377
Modelled: 395
Confidence: 100.0%
Identity: 97%
PDB header:isomerase, cell cycle
Chain: B: PDB Molecule:survival protein sura;
PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding

Phyre2
2 |
| c2pv3B_ |

### PDB 2pv3 chain B

Region: 25 - 427
Aligned: 284
Modelled: 292
Confidence: 100.0%
Identity: 84%
PDB header:isomerase
Chain: B: PDB Molecule:chaperone sura;
PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk

Phyre2
3 |
| c3nrkA_ |

### PDB 3nrk chain A

Region: 25 - 428
Aligned: 290
Modelled: 293
Confidence: 100.0%
Identity: 16%
PDB header:unknown function
Chain: A: PDB Molecule:lic12922;
PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922

Phyre2
4 |
| c3rgcB_ |

### PDB 3rgc chain B

Region: 26 - 426
Aligned: 248
Modelled: 247
Confidence: 100.0%
Identity: 22%
PDB header:chaperone
Chain: B: PDB Molecule:possible periplasmic protein;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni

Phyre2
5 |
| c3rfwA_ |

### PDB 3rfw chain A

Region: 28 - 425
Aligned: 248
Modelled: 248
Confidence: 100.0%
Identity: 25%
PDB header:chaperone
Chain: A: PDB Molecule:cell-binding factor 2;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni

Phyre2
6 |
| d1m5ya1 |

### PDB 1m5y chain A domain 1

Region: 25 - 196
Aligned: 166
Modelled: 172
Confidence: 99.9%
Identity: 86%
Fold: Triger factor/SurA peptide-binding domain-like
Superfamily: Triger factor/SurA peptide-binding domain-like
Family: Porin chaperone SurA, peptide-binding domain

Phyre2
7 |
| c1f8aB_ |

### PDB 1f8a chain B

Region: 229 - 382
Aligned: 152
Modelled: 154
Confidence: 99.8%
Identity: 23%
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-
PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains

Phyre2
8 |
| d1m5ya3 |

### PDB 1m5y chain A domain 3

Region: 284 - 385
Aligned: 102
Modelled: 102
Confidence: 99.8%
Identity: 100%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
9 |
| c1yw5A_ |

### PDB 1yw5 chain A

Region: 281 - 382
Aligned: 101
Modelled: 102
Confidence: 99.8%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase;
PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans

Phyre2
10 |
| c2jzvA_ |

### PDB 2jzv chain A

Region: 293 - 382
Aligned: 90
Modelled: 90
Confidence: 99.7%
Identity: 33%
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase

Phyre2
11 |
| d2pv2a1 |

### PDB 2pv2 chain A domain 1

Region: 173 - 274
Aligned: 102
Modelled: 102
Confidence: 99.7%
Identity: 100%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
12 |
| d1pina2 |

### PDB 1pin chain A domain 2

Region: 164 - 272
Aligned: 109
Modelled: 109
Confidence: 99.7%
Identity: 21%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
13 |
| d1j6ya_ |

### PDB 1j6y chain A

Region: 168 - 270
Aligned: 103
Modelled: 103
Confidence: 99.6%
Identity: 26%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
14 |
| c3gpkA_ |

### PDB 3gpk chain A

Region: 172 - 282
Aligned: 107
Modelled: 111
Confidence: 99.6%
Identity: 27%
PDB header:isomerase
Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.

Phyre2
15 |
| d1jnsa_ |

### PDB 1jns chain A

Region: 304 - 383
Aligned: 78
Modelled: 80
Confidence: 99.6%
Identity: 31%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
16 |
| c2rqsA_ |

### PDB 2rqs chain A

Region: 304 - 382
Aligned: 78
Modelled: 79
Confidence: 99.6%
Identity: 37%
PDB header:isomerase
Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase;
PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)

Phyre2
17 |
| d1eq3a_ |

### PDB 1eq3 chain A

Region: 307 - 384
Aligned: 75
Modelled: 78
Confidence: 99.5%
Identity: 35%
Fold: FKBP-like
Superfamily: FKBP-like
Family: FKBP immunophilin/proline isomerase

Phyre2
18 |
| c2kgjA_ |

### PDB 2kgj chain A

Region: 304 - 386
Aligned: 81
Modelled: 83
Confidence: 99.5%
Identity: 32%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d;
PDBTitle: solution structure of parvulin domain of ppid from e.coli

Phyre2
19 |
| c1zk6A_ |

### PDB 1zk6 chain A

Region: 304 - 383
Aligned: 79
Modelled: 80
Confidence: 99.5%
Identity: 28%
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: nmr solution structure of b. subtilis prsa ppiase

Phyre2
20 |
| c2nsaA_ |

### PDB 2nsa chain A

Region: 36 - 143
Aligned: 108
Modelled: 108
Confidence: 97.3%
Identity: 15%
PDB header:chaperone
Chain: A: PDB Molecule:trigger factor;
PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1m5yB_ |
|  | 100.0 | 97 | PDB header:isomerase, cell cycle Chain: B: PDB Molecule:survival protein sura; PDBTitle: crystallographic structure of sura, a molecular chaperone2 that facilitates outer membrane porin folding
2 | c2pv3B_ |
|  | 100.0 | 84 | PDB header:isomerase Chain: B: PDB Molecule:chaperone sura; PDBTitle: crystallographic structure of sura fragment lacking the second2 peptidyl-prolyl isomerase domain complexed with peptide nftlkfwdifrk
3 | c3nrkA_ |
|  | 100.0 | 16 | PDB header:unknown function Chain: A: PDB Molecule:lic12922; PDBTitle: the crystal structure of the leptospiral hypothetical protein lic12922
4 | c3rgcB_ |
|  | 100.0 | 22 | PDB header:chaperone Chain: B: PDB Molecule:possible periplasmic protein; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni
5 | c3rfwA_ |
|  | 100.0 | 25 | PDB header:chaperone Chain: A: PDB Molecule:cell-binding factor 2; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni
6 | d1m5ya1 |
|  | 99.9 | 86 | Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:Porin chaperone SurA, peptide-binding domain
7 | c1f8aB_ |
|  | 99.8 | 23 | PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains
8 | d1m5ya3 |
|  | 99.8 | 100 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
9 | c1yw5A_ |
|  | 99.8 | 21 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
10 | c2jzvA_ |
|  | 99.7 | 33 | PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: solution structure of s. aureus prsa-ppiase
11 | d2pv2a1 |
|  | 99.7 | 100 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
12 | d1pina2 |
|  | 99.7 | 21 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
13 | d1j6ya_ |
|  | 99.6 | 26 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
14 | c3gpkA_ |
|  | 99.6 | 27 | PDB header:isomerase Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.
15 | d1jnsa_ |
|  | 99.6 | 31 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
16 | c2rqsA_ |
|  | 99.6 | 37 | PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)
17 | d1eq3a_ |
|  | 99.5 | 35 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
18 | c2kgjA_ |
|  | 99.5 | 32 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d; PDBTitle: solution structure of parvulin domain of ppid from e.coli
19 | c1zk6A_ |
|  | 99.5 | 28 | PDB header:isomerase Chain: A: PDB Molecule:foldase protein prsa; PDBTitle: nmr solution structure of b. subtilis prsa ppiase
20 | c2nsaA_ |
|  | 97.3 | 15 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: structures of and interactions between domains of trigger factor from2 themotoga maritim
21 | c3gtyX_ |
| not modelled | 97.0 | 13 | PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone
22 | d1w26a1 |
| not modelled | 96.8 | 15 | Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:TF C-terminus
23 | c1w26B_ |
| not modelled | 96.2 | 12 | PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins
24 | d1t11a1 |
| not modelled | 93.7 | 16 | Fold:Triger factor/SurA peptide-binding domain-like Superfamily:Triger factor/SurA peptide-binding domain-like Family:TF C-terminus
25 | c1t11A_ |
| not modelled | 91.6 | 16 | PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor
26 | d1sknp_ |
| not modelled | 20.8 | 18 | Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors
27 | c2kz5A_ |
| not modelled | 17.8 | 16 | PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b
28 | d1rwsa_ |
| not modelled | 17.7 | 44 | Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS
29 | d1a75a_ |
| not modelled | 15.6 | 7 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
30 | d1etob_ |
| not modelled | 11.1 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like
31 | d1p5dx4 |
| not modelled | 10.7 | 14 | Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain
32 | c2kycA_ |
| not modelled | 10.1 | 6 | PDB header:calcium binding protein Chain: A: PDB Molecule:parvalbumin, thymic cpv3; PDBTitle: solution structure of ca-free chicken parvalbumin 3 (cpv3)
33 | d1zata2 |
| not modelled | 8.8 | 15 | Fold:L,D-transpeptidase pre-catalytic domain-like Superfamily:L,D-transpeptidase pre-catalytic domain-like Family:L,D-transpeptidase pre-catalytic domain-like
34 | c1q6uA_ |
| not modelled | 7.5 | 19 | PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli
35 | c3fs7D_ |
| not modelled | 7.3 | 6 | PDB header:metal binding protein Chain: D: PDB Molecule:parvalbumin, thymic; PDBTitle: crystal structure of gallus gallus beta-parvalbumin (avian2 thymic hormone)
36 | d1dq3a2 |
| not modelled | 7.0 | 9 | Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:PI-Pfui intein middle domain
37 | d1stza1 |
| not modelled | 6.9 | 5 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain
38 | d1bu3a_ |
| not modelled | 6.7 | 4 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
39 | c3r9jD_ |
| not modelled | 6.6 | 17 | PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
40 | c3c04A_ |
| not modelled | 6.6 | 10 | PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa
41 | d1wdcb_ |
| not modelled | 6.5 | 9 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
42 | c3nr7A_ |
| not modelled | 6.3 | 23 | PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein h-ns; PDBTitle: crystal structure of s. typhimurium h-ns 1-83
43 | d2jnaa1 |
| not modelled | 6.1 | 20 | Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like
44 | d1u2ma_ |
| not modelled | 6.0 | 18 | Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like
45 | d1rwya_ |
| not modelled | 5.9 | 9 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
46 | d2pvba_ |
| not modelled | 5.8 | 7 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
47 | d2jn6a1 |
| not modelled | 5.6 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like
48 | c3id5E_ |
| not modelled | 5.4 | 7 | PDB header:transferase/ribosomal protein/rna Chain: E: PDB Molecule:pre mrna splicing protein; PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0