Phyre 2 alignment of P0ABZ6 with d1sknp_

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Job Description | P0ABZ6
Confidence | 20.81% | Date | Thu Jan 5 11:16:47 GMT 2012
Rank | 26 | Aligned Residues | 38
% Identity | 18% | Template | d1sknp_
SCOP info | A DNA-binding domain in eukaryotic transcription factors | A DNA-binding domain in eukaryotic transcription factors | A DNA-binding domain in eukaryotic transcription factors
Resolution | 2.50

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | Q | M | G | Q | K | M | G | V | K | I | S | D | E | Q | L | D | Q | A | I | A | N | I | A | K | Q | N | N | M | T | L | D | Q | M | R | S | R | L | A | Y | D | G | L | N | Y | N | T | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | Q | L | A | S | D | N | E | L | P | V | S | A | F | Q | I | S | . | . | . | . | . | . | . | . | . | . | E | M | S | L | S | E | L | Q | Q | V | L | K | N | E | S | L | S | E | Y | Q | R
Template Known Secondary structure |  |  |  |  |  |  |  | T | T |  | S | S |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  | S |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 462 | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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