BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (579 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 1176 0.0 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 1136 0.0 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 582 e-164 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 454 e-126 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 387 e-106 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 387 e-106 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 387 e-106 UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 384 e-105 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 378 e-103 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 377 e-103 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 370 e-100 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 369 e-100 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 369 e-100 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 367 e-100 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 366 2e-99 UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 365 2e-99 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 362 3e-98 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 362 3e-98 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 361 5e-98 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 359 2e-97 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 357 9e-97 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 356 2e-96 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 355 2e-96 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 354 4e-96 UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 353 8e-96 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 352 3e-95 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 350 8e-95 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 346 1e-93 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 343 9e-93 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 343 1e-92 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 341 4e-92 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 338 4e-91 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 336 2e-90 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 332 2e-89 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 332 3e-89 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 332 3e-89 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 331 5e-89 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 331 5e-89 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 330 1e-88 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 330 1e-88 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 328 2e-88 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 327 5e-88 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 325 2e-87 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 324 5e-87 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 323 1e-86 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 322 2e-86 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 321 4e-86 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 320 8e-86 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 320 1e-85 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 316 2e-84 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 314 6e-84 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 313 8e-84 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 303 8e-81 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 303 2e-80 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 299 2e-79 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 298 3e-79 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 296 2e-78 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 293 1e-77 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 293 2e-77 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 263 2e-68 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 262 2e-68 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 261 6e-68 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 261 6e-68 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 260 1e-67 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 259 1e-67 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 259 1e-67 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 257 7e-67 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 256 1e-66 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 251 6e-65 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 245 3e-63 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 241 4e-62 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 241 7e-62 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 239 1e-61 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 235 3e-60 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 235 4e-60 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 235 4e-60 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 233 2e-59 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 232 2e-59 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 232 3e-59 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 227 8e-58 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 226 2e-57 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 225 3e-57 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 219 2e-55 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 219 2e-55 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 219 3e-55 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 211 5e-53 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 211 5e-53 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 206 2e-51 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 202 2e-50 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 199 3e-49 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 198 4e-49 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 196 3e-48 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 194 7e-48 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 192 2e-47 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 185 4e-45 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 173 1e-41 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 166 2e-39 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 166 3e-39 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 130 1e-28 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 130 1e-28 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 130 2e-28 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 127 2e-27 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 124 1e-26 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 120 1e-25 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 114 1e-23 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 109 3e-22 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 81 1e-13 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 66 3e-09 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 65 6e-09 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 61 1e-07 UniRef50_UPI000190D087 possible secretory protein (associated wi... 60 2e-07 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 54 2e-05 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 54 2e-05 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 47 0.002 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/579 (100%), Positives = 579/579 (100%) Query: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT Sbjct: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 Query: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV Sbjct: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 Query: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA Sbjct: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL Sbjct: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA Sbjct: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY Sbjct: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV Sbjct: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 Query: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT Sbjct: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP Sbjct: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM Sbjct: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/572 (97%), Positives = 563/572 (98%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA Sbjct: 125 FIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD Sbjct: 185 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVR+QLLASPSVLYTATGIMFVLAVVPGMP Sbjct: 245 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMP 304 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPFLLFSALLGFTGWRMSK+P AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL Sbjct: 305 HLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 364 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI Sbjct: 365 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 424 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 KADEADIPADKLMALPSSETYGEIDGV GNDPAYGMPVTWIQ AQKAKALNMGYQVIDSA Sbjct: 425 KADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSA 484 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSS APRLAEDLSAALNYSQLLKVYRALLT Sbjct: 485 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLT 544 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 EGVSLRDIVTIATVLVASST+TKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE Sbjct: 545 EGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 604 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 NLLTNVVNQAQQ GKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK PVLLVPPQLRPL Sbjct: 605 NLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPPQLRPL 664 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LARYARLFAPGLHVLSYNEVPDELELKIMGAL Sbjct: 665 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 696 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/578 (49%), Positives = 412/578 (71%), Gaps = 11/578 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG ERISEVSARFTLDA+PGKQMAIDADLNAGLINQ QA+TRR++ Sbjct: 122 FIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQETG 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYG+MDGASKFVRGDAIAG++IL INLIGGV IGIF +++SA +FQ + L+TIGD Sbjct: 182 DEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD-NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 G+VAQIPSLLL+T+AA+IVTRVS+ + DI+ ++ Q+L++PSVLY + G+M ++ +VP M Sbjct: 242 GIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNM 301 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTIT---ETSEQQVSWETIPLIE 242 PHLPFL+F+ALLGF GW+ SK EE LE + +++ SE+ + W+ + IE Sbjct: 302 PHLPFLIFAALLGFVGWQQSKI-----QEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIE 356 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 PI+L+LG+KLV+L++ G PL + I+G R+ +S+ G L+PE+ IR+N LKP +Y IF Sbjct: 357 PITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIF 416 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 I+G + + + LMA+ S +++G IDG+ G DPAY MP WI K+ A+N GYQV Sbjct: 417 IDGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQV 476 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 I A VIATH+NK++ + + +FNYDDI ++++L P+L+E LSAA+ L++ + Sbjct: 477 ISLADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIK 536 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 481 LL + V +++ IA ++ S TKD IL+++DVR AL+R+I + L ++ L Sbjct: 537 NLLIDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVL 596 Query: 482 NNELENLLTNVVNQAQ-QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 ++EL+N+L N + Q Q Q + LD VP+DPN+L Q Q +P + +QM G P+LLV Sbjct: 597 SSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVS 656 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P +RP++++++R F+ L VLS+NE+ D+ ++ +G L Sbjct: 657 PTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 239/590 (40%), Positives = 358/590 (60%), Gaps = 36/590 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEVSARFTLDAMPGKQMAIDADLNAG+I+Q +A+TRR+DVASEADFYGAMDGA Sbjct: 153 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEADFYGAMDGA 212 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGD++AG++IL IN+ GG+ +G+ ++ L A ++YVL+TIGDGLVAQIPSLLLS Sbjct: 213 SKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVAQIPSLLLS 272 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AAAI+VTRV+ + D+ V +Q+ SP L A I+F++ +PGMPH PF+ + + G Sbjct: 273 VAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPFITLAIICG 332 Query: 199 FTGWRMSKQPLAAEA--------------------------------EEKSLETLTRTIT 226 + + + AE E +S Sbjct: 333 ILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSARQGNPPPQ 392 Query: 227 ETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEI 286 + +VSW+ + ++ + L +GY+L+ LVDK QG L RI+GVR+ +S G L+P + Sbjct: 393 SSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQDLGFLIPAV 452 Query: 287 RIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTW 346 IR+N L PS Y I + G+ E ++ DK +A+ + +G + G + DPA+G+ W Sbjct: 453 HIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDPAFGLEAIW 512 Query: 347 IQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAE 406 I AQ+ +A +GY V+D ++V+ATH+N+I++++ +L ++++ + + L +P+L E Sbjct: 513 IDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLGEKSPKLVE 572 Query: 407 DL-SAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 +L L+ +QLLK + LL E V +RD+ TIA L A + D L + R++L R Sbjct: 573 ELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSIARVSLARQ 632 Query: 466 ITHPFVRKQ-ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQV 524 I V + L V TL+ LE LL V QAQ+ G D ++P + + ++ + Sbjct: 633 IVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGAS--DGAFIEPQLAERLNKSLVET 690 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 ++ + AG+ VLLV +RP++A++ R +HV++YNEVPD ++ I Sbjct: 691 AKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITI 740 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 226/586 (38%), Positives = 346/586 (59%), Gaps = 27/586 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGAER++EV+ARFTLDAMPGKQMAIDADLNAG+I++ +A+ RR +V Sbjct: 120 FLILVIIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFV+GDAIAG++I AIN++GG+ IG+ + + A Y L+T+GD Sbjct: 180 READFYGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIP+LLLSTA IIVTR + D+ D+ + + LY +G++F LAVVPG+P Sbjct: 240 GLVAQIPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAE------EKSLE---TLTRTITETSEQQVSWET 237 +PF L + + + + ++ AAEAE E S + S Sbjct: 300 TIPFALLGSAMAAMAYGIQRE--AAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENV 357 Query: 238 IPL--IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLK 295 +PL ++P+ + +GY L+ LVD +QG + +RI +R+ ++ G+++P IRIR+N +LK Sbjct: 358 LPLLTVDPMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLK 417 Query: 296 PSQYAIFINGIKADEADIPADKLMALPSSETYGE--IDGVQGNDPAYGMPVTWIQAAQKA 353 P++Y I + G + ++ D +A+ T GE + G+ +PA+G+P WI + Sbjct: 418 PTEYVIRVKGAEVGRGELLPDHYLAM---STGGEDLLVGIPTKEPAFGLPALWISPEIRD 474 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 +A +GY V+D SV+ATH++++++ Y DL ++ +L + ++ T P + +DL L+ Sbjct: 475 QAEGLGYTVVDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLLDVLS 534 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK 473 + + KV + L+ E VS+RD+VT+ L TK L VR AL R IT + Sbjct: 535 LADVQKVLQGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKL-QD 593 Query: 474 QE--LTVYTLNNELENLLTNVV-NQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 Q+ L VYTL+ E + + QG ++ ++P P + + + E M Sbjct: 594 QDGVLGVYTLSPRWEQRIKECIKGDLMQGWQL---NMP--PKEMQELMEAVGAAAEAMVM 648 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 G PVLL P +R ++ R P L V+SYNE+ +L+ +G Sbjct: 649 GGLTPVLLTHPDVRLVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLG 694 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/562 (37%), Positives = 338/562 (60%), Gaps = 25/562 (4%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GA RI+EV+ARFTLDA+PGKQMAIDADLN+G I + +A+ RRK+++ E++FYGAMDGA Sbjct: 143 TRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMDGA 202 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDA+A ++IL +N++GG+ IG+ L A Y L+TIG+GLVAQ+P+L++S Sbjct: 203 SKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALIVS 262 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA I+VTR D+ ++R Q+L P L A+GI+F+L+V+PG+PH F L +++ G Sbjct: 263 VAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLLASVTG 322 Query: 199 FTGWRMS----KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVA 254 +R + K+ +AEEK T+ +E ++ ++ L+E L++GY LV Sbjct: 323 LMAYRRTTLEKKKARELQAEEK-------TVPPPAENVETYLSLDLLE---LNVGYGLVD 372 Query: 255 LVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIP 314 LV+ G+ LT RIRG+R+ ++ G+++P I IR+N +LKP +Y + + G ++ Sbjct: 373 LVEGKAGSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELL 432 Query: 315 ADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVN 374 D L+A+ ++G+ +P +G+P TWI + + G+ V+D +V++TH+ Sbjct: 433 PDSLLAMNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLT 492 Query: 375 KIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRD 433 +++RS+ +L ++ +L + L PRL EDL ++ L+ V ALL+E VS+RD Sbjct: 493 EVIRSHAAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRD 552 Query: 434 IVTIATVL---VASSTVTKDHILLAADVRLALRRSITHPFV--RKQELTVYTLNNELENL 488 + TI + +A+ +KD LA VR AL RSI +P++ + + L V T + E + Sbjct: 553 LRTILEAVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEV 612 Query: 489 LTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLA 548 +Q G ++L +P + + S + QV E + G PVLLV Q R + Sbjct: 613 FMKQASQTPPGSPLVL-----EPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVR 667 Query: 549 RYARLFAPGLHVLSYNEVPDEL 570 R+ + L VLS EVP ++ Sbjct: 668 RFLERYFSSLPVLSPMEVPKDV 689 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/563 (38%), Positives = 333/563 (59%), Gaps = 17/563 (3%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER+SEV+ARFTLDAMPGKQMAIDADLN G I AQA+ RR+ + E++F+GAMDGA+ Sbjct: 122 KGSERVSEVTARFTLDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGAT 181 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA+AG++I +N+IGG +G+ K L A AF +Y ++TIGDGLV+QIPSL++S Sbjct: 182 KYVKGDAVAGLIITVVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISL 241 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A I+VT+VS DI + QL + P VLY G + L +V +P + F + A+ F Sbjct: 242 ATGIVVTKVSKEADIGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIF 301 Query: 200 TGWRMSKQ-PLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 G + K+ +A+ EE S E + E VS + IE L GY ++ L D Sbjct: 302 CGRVIDKRVKIASIEEEASTEEQSGEEIRRPENVVSLLQVDQIE---LEFGYGIIPLADV 358 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI E +I D Sbjct: 359 NQGGDLLDRVVLIRRQIALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHY 418 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 MA+ EI G+ +P++ +P WI +Q+ +A + GY V+D S+IATH+ +++R Sbjct: 419 MAMNPGYVEEEITGIPTFEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIR 478 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 ++ +L D+ L ++ L +L L ++ KV + LL EG+S+RD+VTI Sbjct: 479 GHLDELLTRQDVQNLITNITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTI 538 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLNNELENLLTNVVNQA 496 L + T+D +L VR +L+R+I++ + E+T V TL+ ++E + N V Q Sbjct: 539 FETLADYAPTTRDTDVLTEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQT 598 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVK---EQMKAAGKDPVLLVPPQLRPLLARYARL 553 +QG + +DP + QS M VK E+++ GK+P+++ P +R + + Sbjct: 599 EQGA-----FLAIDP---EKTQSIMKSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKE 650 Query: 554 FAPGLHVLSYNEVPDELELKIMG 576 + L V+SYNE+ +EL+ +G Sbjct: 651 YFNDLIVISYNEIESNVELQSVG 673 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/570 (39%), Positives = 330/570 (57%), Gaps = 26/570 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA RI+EV ARF LDAMPGKQMAIDADLNAGLI + +A+ RR + EADFYG Sbjct: 137 NFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEKAKKRRIKITQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ IN+ GG+ IG+ ++++ + A + Y L+TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVEVYTLLTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA +IVTRVS N ++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLGVLGLVPGMPNIIFLVF 316 Query: 194 SALLGFTGWRMSKQPLAAEAE----EKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 + LL W + ++ E + K + + I+E SW + L +PI + +G Sbjct: 317 TVLLFILSWWLYEKKYDLENDFIKSNKKYKFIHDAISEA-----SWNDVELEDPIRIEIG 371 Query: 250 YKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKAD 309 YKL + D + L RIR VR+ ++ G L P +RI+ N L + Y IFI G++ Sbjct: 372 YKLTPMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNSYRIFIKGVEVG 431 Query: 310 EADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVI 369 + + MA+ S + + +P +G+ WI K KA GY VI+S+ V+ Sbjct: 432 QGKCFYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKKGYSVIESSVVL 491 Query: 370 ATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEG 428 +TH+N ++ ++I DLF + QL R++ P+L EDL +N + K+ R LL E Sbjct: 492 STHLNFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIFHKILRNLLLEH 551 Query: 429 VSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNELEN 487 V +RD+ TI L + KD L + VR+ALR+ I F + + + L LE Sbjct: 552 VPIRDMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNIIEIIGLEPNLER 611 Query: 488 LLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAA---GKDPVLLVPPQLR 544 LL N + ++PN+ ++ + Q KE +K G VLLV LR Sbjct: 612 LLLNSLKSGTD---------TIEPNLS---ENLLIQTKEAIKKQLLIGSPLVLLVRHSLR 659 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKI 574 L+++ R P L VLS E+ D E+K+ Sbjct: 660 YFLSKFLRQNFPELTVLSQFEIIDVKEIKM 689 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/566 (39%), Positives = 331/566 (58%), Gaps = 19/566 (3%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+ +A+ RR++VA+EA Sbjct: 130 LMVINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVATEA 189 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 DFYG+MDGASKFV+GDA+AG++IL IN+ GG+ +G + LS A Y+++ IGD LV Sbjct: 190 DFYGSMDGASKFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGDALV 249 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 AQ+P+LLLS AAA IVTRVS D++ + +Q S I+ +L +VPGMPH+ Sbjct: 250 AQVPALLLSIAAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMPHMI 308 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 L +A+ GF W++SK A +A E + S + W I + L LG Sbjct: 309 ILSAAAVAGFVAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGLELG 368 Query: 250 YKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKAD 309 Y LV LVD+ +G PL RI G+R+ +S G ++P +R+R+N L P+ Y I + G+ Sbjct: 369 YGLVGLVDERKGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGVIMG 428 Query: 310 EADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVI 369 E + ++L+AL S + G ++G + DP++G+ WI ++ A+ GY V+D A+V+ Sbjct: 429 EDECFPEQLLALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPATVV 488 Query: 370 ATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRALLTEG 428 ATH+N+++ + DLF D+ +L + L AP+L L+ L+ +Q+ RALL EG Sbjct: 489 ATHLNQVIAATAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALLAEG 548 Query: 429 VSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELEN 487 V L+D IA +V ++ + D + L ++R + I V K L V TL+ LE+ Sbjct: 549 VPLKDFRRIAEAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAGLES 608 Query: 488 LLTNVVNQAQQGGKVMLDSVPVDPNMLNQF-----QSTMPQVKEQMKAAGKDPVLLVPPQ 542 LL V + S P +P + N+ ++ MP V + A ++ P Sbjct: 609 LLAQAVRTSPGA------SHPFEPALANRIVAAISEAAMPLVNSATRFA-----IVTSPI 657 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPD 568 R LAR + P V+S+ E+PD Sbjct: 658 ARRALARLLKPHLPETPVMSFLEIPD 683 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 219/568 (38%), Positives = 343/568 (60%), Gaps = 25/568 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V++KG+ RI+EV+ARFTLDAMPGKQMAIDAD+NAGLIN+A+A+ RR++VA EA+FYG Sbjct: 133 NFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEFYG 192 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDA+AG++I INL+GG+ IG+ ++ +S A + L+T+GDGLV+QIP Sbjct: 193 AMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQIP 252 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA II+TR S N + +++ Q A P V + A G +F++++VPG+P +PFL+ Sbjct: 253 ALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFLIL 312 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLI--EPISLSLGYK 251 S LG +G+ L ++K LET+ +T +E E L+ +PI L +GY Sbjct: 313 SLGLGASGYY-----LQLGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYG 367 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 L+ +V+ + L R++ VR+ I+ G +LP + I++N +L S Y I I G + Sbjct: 368 LIDMVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKG 427 Query: 312 DIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIAT 371 +I L+AL S + ++G+ +PA+G+P WI ++ +A GY V++ +VI T Sbjct: 428 EIRPRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIIT 487 Query: 372 HVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK-VYRALLTEGVS 430 H+ +++R ++ + + L + + P++ E++ + LL+ V + LL E V Sbjct: 488 HLTELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVP 547 Query: 431 LRDIVTIATVLVASSTVTKDHIL---LAADVRLALRRSITHPFVRKQ-ELTVYTLNNELE 486 +RD++ I L A S +H+ L VR L R+IT ++ Q EL V+ L+ ELE Sbjct: 548 IRDLMLI---LEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELE 604 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD-PVLLVPPQLRP 545 ++ ++Q QQG + LD + ++Q + +V E D PVLL PQLR Sbjct: 605 QRMSERMSQ-QQGWALPLD--------MPEWQRFISRVNEISSHFDVDIPVLLTTPQLRG 655 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELK 573 L R R + VLS E+P + ++ Sbjct: 656 HLTRALRKVMTRIAVLSIAEIPPQTNIQ 683 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/567 (37%), Positives = 343/567 (60%), Gaps = 14/567 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+T+GAER+SEVSARFTLDAMPGKQMAIDADLNAGLI + +A+ RRK++ Sbjct: 109 FLIIAIVQFIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIA ++I+ IN++ G+ IG+ + + A Y+++T+GD Sbjct: 169 QEAKFYGAMDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STA +IVTR + ++ DV QL P +L A G++F L +VP +P Sbjct: 229 GLVSQIPALLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP +L +L + G+ +++ E E++ I + + +E + ++PI L Sbjct: 289 KLPLILIGSLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKK---VYELLQ-VDPIEL 344 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L A G L RI +R+ I+ G+++P IR+R+N +LKP++Y I I G Sbjct: 345 EFGYELIPL---ASGE-LLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGN 400 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + D+ MA+ + E +I G++ +PA+G+P W+ +++KA GY V+D Sbjct: 401 EIARGKVYVDRYMAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVP 460 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVIATH+ +++ + +L ++ L + + +T P L E+L L ++ KV LL Sbjct: 461 SVIATHLTHVIKQHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLL 520 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 EG+S+RD+VTI L + + +D +L VR AL R+I++ + ++ V TL+ + Sbjct: 521 REGLSIRDLVTILETLADYAPIIRDTDVLTEYVRQALARTISNKYAPYGKIEVITLDPSV 580 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+++ + Q + G + L +P+ + ++ ++ +++ G PV+L P R Sbjct: 581 EQLISSSITQTEHGSYLAL-----EPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRF 635 Query: 546 LLARYARLFAPGLHVLSYNEVPDELEL 572 L + +P + VLSYNE+ +E+ Sbjct: 636 YLRKLVEQISPDIAVLSYNELLPNIEV 662 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/568 (39%), Positives = 332/568 (58%), Gaps = 9/568 (1%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ +NFIV+TKG+ER+SEV ARFTLDAMPGKQM+IDADLNAG+I + QA+ RR+ + +EA Sbjct: 121 LVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQKIQAEA 180 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 DFYGAMDGASKFV+GDAIA ++IL IN+IGG G+ + A Y L+TIGDGLV Sbjct: 181 DFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTIGDGLV 240 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 QIP+LL+STA ++VTR + ++ D+ QL +P LY G+ VLA+ G+P LP Sbjct: 241 TQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-GLPLLP 299 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 L+ + +L G M K A EE + T E S++ + + ++ + L LG Sbjct: 300 LLIVAIVLVALGRVMDKGSQKAVVEESA--AARETALEESKKPENVLNLLNVDNMELELG 357 Query: 250 YKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKAD 309 Y L+ALVD QG L RI +R+ ++ G ++P IR+R+N L+P+QY+I I G + Sbjct: 358 YALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRGAEVA 417 Query: 310 EADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVI 369 +I AD +A+ S I G+ +PA+G+ WI A + + G V+D+ +V+ Sbjct: 418 GGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDAPTVL 477 Query: 370 ATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGV 429 ATH+ ++++S ++ + D+ L + AP +D L+ L KV LL E V Sbjct: 478 ATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEHLDLGHLQKVLANLLRERV 537 Query: 430 SLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNELENL 488 S+RD+VTI L ++ TKD L VR +L R I P + ++L V TL +LE L Sbjct: 538 SIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEPKLEQL 597 Query: 489 LTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLA 548 + + + + G + L DP +L + ++ + E+M G +PVL+ P +R L Sbjct: 598 ILDSIQPSDFGSYMTL-----DPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRINLK 652 Query: 549 RYARLFAPGLHVLSYNEVPDELELKIMG 576 R P L VLSYNE+ ++++ +G Sbjct: 653 RVTERQLPQLMVLSYNELVHGVQVQAVG 680 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/574 (35%), Positives = 336/574 (58%), Gaps = 11/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+V+ KG+ER++EV+ARFTLDAMPGKQMAIDADLN G I +A+ RR + Sbjct: 110 FIVLIIIQFVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQ 169 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA+K+V+GDA AG++I INL+GG +G+ L + A Q++ L+TIGD Sbjct: 170 KESSFYGAMDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGD 229 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSLL+S + I+VT+ S+ D + ++ QL + VLY + ++ VL ++ + Sbjct: 230 GLVSQIPSLLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLR 289 Query: 187 HLPFLLFSALLGF--TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 + +L + F TG + K+ E+++ + + E + + ++ ++PI Sbjct: 290 NEWWLFIGLAVAFFVTGKNLDKKAGIESIEDETAQ--AESDAEEIRKPENVVSLLQVDPI 347 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L GY ++ L D QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I Sbjct: 348 ELEFGYGIIPLADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIK 407 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 GI+ E +I D MA+ EI G+ +P++ +P WI +Q+ +A ++GY V+D Sbjct: 408 GIQVTEGEILFDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVD 467 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 S+IATH+ +++RS+I +L D+ L N L + P + ++L L ++ KV + Sbjct: 468 PPSIIATHLTEVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQN 527 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLN 482 LL+EG+S+RD++TI L + T+D +L VR L+R+I+ + E T V TL+ Sbjct: 528 LLSEGISIRDLLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLD 587 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +E + + V Q +QG + L DP+ + ++ ++++ GK +++ P Sbjct: 588 PAVEQEIMSSVKQTEQGSYLSL-----DPDRIKAIIKSVETEIGKLESLGKSAIIITSPI 642 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 +R + + L VLSYNEV +EL+ +G Sbjct: 643 VRMYFKKMTEDYFKDLIVLSYNEVESNVELQSVG 676 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/576 (36%), Positives = 330/576 (57%), Gaps = 13/576 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L +N V+T G RI+EV+ARFTLDAMPGKQMAI+ADLNAGLI++ +A RRK++ Sbjct: 130 FMILFILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIR 189 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA KFV GD AGM I IN+IGG+ +GI + ++ A Y L+T+GD Sbjct: 190 KEADFYGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGD 249 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ IPS+++STAA IIV+R + + + QL + + +G++ + A+VPG+P Sbjct: 250 GLVSTIPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLP 309 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP--- 243 +PFL+FSA L F + + EA+ + + + + E + + P Sbjct: 310 TVPFLIFSASLFFFAKLLGDRD-GDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDA 368 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 + L +GY L+ LVD+ Q L RIR +R+ + GV++P + +R+N +LKP QYA+ I Sbjct: 369 LELEVGYGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLI 428 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + A+I D L+A+ I G++ +PA+ +P WI +QK +A+ GY V+ Sbjct: 429 KGNQVASAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVV 488 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 D ++VIATH+ ++ R ++ + ++ L + LS AP+ E+L L+ + KV + Sbjct: 489 DPSTVIATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQ 548 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTL 481 L+ E VS+RD++++ L K+ L VR L RSI P + + L + TL Sbjct: 549 NLVRENVSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITL 608 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQF-QSTMPQVKEQMKAAGKDPVLLVP 540 + +E L + + Q + G + L +P+ + QS QV+ + G+ PV+L Sbjct: 609 DANVERTLQDSIRQTEGGAYLAL-----NPSTAQRLIQSVNTQVENAVGTDGQ-PVVLTQ 662 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 P RP LA+ F P + VLS E+P ++ L+ +G Sbjct: 663 PGTRPHLAQLLMRFLPNIPVLSQAEIPPDIRLQAVG 698 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 215/570 (37%), Positives = 335/570 (58%), Gaps = 13/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EV+ARFTLD+MPGKQ+A+DADLNAG +++++A+ RR ++ Sbjct: 124 FLILVIINFVVITKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAGM+IL +NLIGG+ +G+ +++L A +Y L+T+GD Sbjct: 184 READFYGAMDGASKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L++STAA I+V+R S D++ + Q+ P LY A ++ L V+PG P Sbjct: 244 GLVTQIPALIISTAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 H+ FL +A+L +++ +A + L + E V+W+ IP ++ ++L Sbjct: 304 HVAFLTIAAVLAALALWLTRHRESAAFDSTPLPPIEE---EALPVDVTWDDIPPVDVLAL 360 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY+L+ LVD+ QG RI R+ + G+++P IR+R+N LKP+ + I + G+ Sbjct: 361 EVGYRLIPLVDRNQGGAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGV 420 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 ++P +++A+ + + G IDG G DP +P WI AA+ +A G+ V++ A Sbjct: 421 DVAHGEMPTGQILAVDTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPA 480 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRALL 425 +IA V + R + P+L ++ QL + L+ + P L ED++ L + + + + L+ Sbjct: 481 ELIARQVEAVFRQHAPELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLI 540 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNE 484 E V +RD T+ L A + T+D L VR AL RSI F L V L Sbjct: 541 AENVPIRDTRTLFETLAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPT 600 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E+ L + + G+ +L P+ L+ Q + +A G PVLL P LR Sbjct: 601 TESRL---LYEMGDEGEALL-----APSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLR 652 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKI 574 +L+R R P L V++Y EVP + +++ Sbjct: 653 AILSRLLRRTLPRLAVIAYAEVPADKTVQV 682 >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 199/571 (34%), Positives = 333/571 (58%), Gaps = 9/571 (1%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ INFIV+TKGA RI+EV+ARFTLD MPGKQMAIDADLN+GLI + +A+ RR ++ E+ Sbjct: 142 LVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEARRRRSEIEQES 201 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 +F+GAMDGASKFVRGDAIAG++I IN++ G IG+ + +LSA + Q Y ++T+GDGLV Sbjct: 202 EFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGDGLV 261 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 AQIP+L++S A +VTR S + ++A V Q+ A P V+ + ++ +LA++PGMP + Sbjct: 262 AQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMPTVA 321 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 F L + +G W + ++ A + +E +E + E+ ++ + L +G Sbjct: 322 FGLLAIAMGSWSWYLFRR--AEQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRLDVG 379 Query: 250 YKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKAD 309 Y L++LVD+ Q L +IR +R+ + G ++P I I++N +LKP +Y+ + G++ Sbjct: 380 YGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGVEVG 439 Query: 310 EADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVI 369 + ++ +A+ + G+I G+ +PA+G+P WI + ++ +A +GY V+D+++V+ Sbjct: 440 QGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDASTVL 499 Query: 370 ATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEG 428 ATH+ ++V ++ ++ ++ L + +S P+L E+L ++ + KV + LL E Sbjct: 500 ATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQKVLQGLLRER 559 Query: 429 VSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNELEN 487 VS+RD+ TI L + K L VR +L RSI ++ + LT L + EN Sbjct: 560 VSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPDAEN 619 Query: 488 LLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLL 547 L+ + G + L P Q + + E+ PVL+ ++RP + Sbjct: 620 LVAEAIVSGDYGSYLSL-----SPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRVRPFV 674 Query: 548 ARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + P L VLS NE+P + + +G++ Sbjct: 675 KQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 207/562 (36%), Positives = 342/562 (60%), Gaps = 18/562 (3%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAERISEV+ARFTLDA+PGKQM+IDADLNAGLI + +A+ RR+++ EA+FY AMDGA Sbjct: 126 TKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAMDGA 185 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKF+RGDAIA ++IL ++L+GG+ IGI + +A + Y +++IG+GL +Q+P+LLLS Sbjct: 186 SKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPALLLS 245 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TAA ++ T++S ++ + +L P L + G++ + ++PG+P LPFL SA+L Sbjct: 246 TAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSAILA 305 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 + + +Q L E E K LE L + T +++ E IP EPI+L +GY L+ LVD+ Sbjct: 306 -GAYYLVQQSL-KERELKELEKLAQEKT-KEKEEEGEELIPQPEPITLEIGYALIPLVDE 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 +QG + ++I+ +R+ I+ GV++P I IR+N RLKP++Y I I GI+ D ++ Sbjct: 363 SQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHY 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ G I+G++ DPA+ + WI +K +A +GY V+D+ +V+ TH++++++ Sbjct: 423 LAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIK 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L +++ +L LS P++ +++ + S + +V + LL EG+ + D++TI Sbjct: 483 RNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQ 497 L TKD LL VR AL + IT ++ L L+ ++E L + + + Sbjct: 543 LETLADYIEQTKDPDLLTEYVRQALSKRITRMYLTNGTLYAIALSPKVEAKLVKFLKENR 602 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVK-EQMKAA--GKDPVLLVPPQLRPLLARYARLF 554 + +D V + +P++K E +K A G PVLL ++R + + + Sbjct: 603 EDE--FIDYV---------LNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPY 651 Query: 555 APGLHVLSYNEVPDELELKIMG 576 L VLSYNE+ ++ +KI+G Sbjct: 652 LSELAVLSYNELEKQVNIKIIG 673 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 209/561 (37%), Positives = 326/561 (58%), Gaps = 17/561 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKGA RI+EV ARFTLD MPGKQMAIDADLNAGLI + QA+ RR ++ EADFYG Sbjct: 137 NFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQAKKRRIEINQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ +N+IGG+ IGI ++N++ A Q Y ++TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQVYTILTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STA+ +IVTRVS + +++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLGVLGLVPGMPNIIFLIF 316 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + LL F W + + P+ E +++ + T + SW + L IS+ LG L+ Sbjct: 317 TTLLFFISWLIYRNPVIFTNFESTMKKIDNT-NFCNISDASWNDVQLEGSISIELGNLLI 375 Query: 254 ALVD-KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 ++ ++ + L +IR VR+ + G L P + IR+N L + Y I I GI+ + Sbjct: 376 PMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGNCYCILIKGIEISKGT 435 Query: 313 IPADKLMALPSSETYG--EIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + K +A+ S G + + +DP + WI + +A GY + + ++VI+ Sbjct: 436 VQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQAKQKGYNIAEDSTVIS 495 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGV 429 TH+N I+ ++I LF + QL + +S P+L EDL ++N + +V + LL E V Sbjct: 496 THLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINLTIFHQVLQNLLIENV 555 Query: 430 SLRDIVTIATVLVASS-TVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELEN- 487 +RD+ TI L+ + D +L + VR++L + I + ++ V +++LE Sbjct: 556 PIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIFQNNKIEVIKFDSKLEQI 615 Query: 488 LLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLL 547 LL + N+ DSV ++P + N + Q K VLLV LR + Sbjct: 616 LLKTIANK---------DSV-LEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHHNLRVFI 665 Query: 548 ARYARLFAPGLHVLSYNEVPD 568 A+ P + VLS E+ D Sbjct: 666 AKMLLKNIPKIFVLSNLELED 686 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 201/550 (36%), Positives = 321/550 (58%), Gaps = 9/550 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GAER++EV+ARFTLDAMPGKQ+AIDADLNAGLI +A+A+ RR+ + EADFYGAMDGA Sbjct: 125 TRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFYGAMDGA 184 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIA M+I+AIN++ G+ IG+ + S A Y ++++GDGLV+QIP+LLLS Sbjct: 185 SKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQIPALLLS 244 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA ++V+R + + ++ DV Q+ LY +G + +L ++ + LP + + Sbjct: 245 TATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIPIAGGAT 304 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 R +++ A + + + E + +E + + ++ I +EP+ GY L+ LVD Sbjct: 305 LMA-RRAERSRALQQKREEEEKARQKRSEAKKPENVYQLIT-VEPVEFEFGYGLIPLVDA 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG +R+ +R+ ++ GV+LP +R+R+N LKP+QY I + G++ +I Sbjct: 363 RQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEILMGHW 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +AL E+ G+ DP +G+P W+ K +A GY V+D SV+ATH+ +++R Sbjct: 423 LALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLTEVLR 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L + +L L T P + ED+ L+ + +V LL EGV +RD+VTI Sbjct: 483 RHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRDLVTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQA 496 L + T+D L VR L R I +++ ++ LTV T + LE + V Sbjct: 543 LEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQAV--V 600 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 +QGG + S+ ++P + ++ +++ GK PVLLV P++R L+R R + P Sbjct: 601 EQGGAL---SIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVP 657 Query: 557 GLHVLSYNEV 566 L VLS+ E+ Sbjct: 658 DLPVLSFAEL 667 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 214/569 (37%), Positives = 339/569 (59%), Gaps = 8/569 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+TINFIVVTKG ERISEV ARFTLDAMPGKQMAIDADLNAGLI++ +A+ RR+ +A Sbjct: 126 FVILVTINFIVVTKGTERISEVGARFTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIA 185 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIAG++I IN+IGG+ IG+ ++ + A + L+T+GD Sbjct: 186 KEADFYGAMDGASKFIRGDAIAGIIITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGD 245 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+ STAA ++VTR ++ ++ +QL + P LY G +FV+ VPGMP Sbjct: 246 GLVSQIPSLITSTAAGLMVTRAVSETNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMP 305 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +PF + + ++ T + M + E++ E + E + + T P E I+ Sbjct: 306 FIPFTILAGMIALTAYMMQLEMKRETIEKEEEEVKEILQQQVEESEEEYITQP--ETITF 363 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD+ +G L +RI+ +R+ +S G+++P I I++N LK +Y I + G+ Sbjct: 364 EIGYGLIPLVDEEKGGELLKRIKSLRKQLSKELGLMVPLIHIKDNLELKSGEYRILLKGV 423 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + I K++A+ + +T G+++GV+ +P +G+ WI +QK KA +G+ V+D Sbjct: 424 EVARYQIEPGKMLAIDTGQTNGKLEGVETTEPTFGLKAYWIDESQKDKARMLGFTVVDIP 483 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +VI TH+++I++ ++ + +L ++L P + E + + Y+ L +V + LL Sbjct: 484 TVIITHLSEIIKQNAHEILGRSETKELVDKLGQKYPIVKEIVPEQVPYAILHRVLQNLLR 543 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 E + ++D++TI L + T T+D +L VR +L R IT + + L TL+ E Sbjct: 544 EHIPIKDLLTIIESLSDNITKTEDTDILTELVRESLARLITSIYAKDGVLYALTLDPASE 603 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 L + + + P+DP L F + + E+ + PVLL P +R Sbjct: 604 EKLYAKIKEYNG------NLPPIDPAKLQSFIMQISKNMEKFVIEQRTPVLLTSPNVRRY 657 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIM 575 + + + + VLSYNEV + +LKI+ Sbjct: 658 VYKIIEPYMSNVAVLSYNEVDPKTKLKII 686 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 207/578 (35%), Positives = 328/578 (56%), Gaps = 13/578 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + ++ + +VVT G+ R+SEVSARFTLDAMPGKQMAID+DLN+G I + QA+ RRKD+ Sbjct: 120 FVIIMIVQLVVVTNGSGRVSEVSARFTLDAMPGKQMAIDSDLNSGAITEEQARQRRKDLQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIAG++I+ +NLIGG I K +LS A Q+ + IGD Sbjct: 180 READFYGSMDGASKFVKGDAIAGIIIVLVNLIGGTIIFTAKGDLSITDALSQFGKLAIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ +PSLL+S A +IVTR DN D+ + L +P + I+ VLA+VPG P Sbjct: 240 GLVSSVPSLLISLATGVIVTRSEDNSTFGTDIASDALRNPQLFKVVGVILLVLALVPGFP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP--LIEPI 244 +PF++ S L F + KQ +E+ E T + E+Q + + +EP+ Sbjct: 300 KIPFIVLS-LAMFAANVLVKQKEEQRIKERIKEEQTLALQRKKEEQEEDDDVASFQVEPL 358 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 S+ +GY L+ LVD N L RI +R+ + G+L+ +RIR+N L + Y+I I Sbjct: 359 SIEIGYGLIPLVDSTIDNSLMNRISAIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIR 418 Query: 305 GIKADEADIPADKLMALPSSETYG-EIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + DI DK M + S+ G+ +PA+ + WI K A G+ VI Sbjct: 419 GNEVGHGDIYPDKYMIISQSDDGSFPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVI 478 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 + +VIATH+ +I+ ++ P+L ++ +L + + + ++L + ++ KV + Sbjct: 479 EPLTVIATHLKEIIHAHAPELLGRQEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQ 538 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 LL E V + D+ TI L TVTKD +L VR LRR+I + + + + + V T+ Sbjct: 539 NLLEENVPINDLSTILETLADYGTVTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTI 598 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPV-DPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 + ++E +++ + + G S PV P+ +N+ + + + +QM A + V+L Sbjct: 599 HPKVEEMVSQSIQKTATG------SYPVMKPDSVNKILTAIGDISQQMAAQNMNYVILTS 652 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P++R + P + VLS NE+P+E+ ++ +G + Sbjct: 653 PKIRLAFRKLIAFNFPDVAVLSLNEIPNEIAIESIGNI 690 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 206/564 (36%), Positives = 332/564 (58%), Gaps = 13/564 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAER+SEV+ARFTLDAMPGKQM+IDADLNAG+I + +A+ RR+ VA EADFYGAMDGA Sbjct: 121 TKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGAMDGA 180 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIAG++I+ IN+I G+ IG+ + +S A + ++T+GDG+V+QIP+LL+S Sbjct: 181 SKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPALLIS 240 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA I+VTR + G++ HD+ QL A P +LY A + +L + + L + LL Sbjct: 241 TATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLAGLLA 300 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL--IEPISLSLGYKLVALV 256 F + +SK + E++ ++ + E E + + L I+PI GY L+ L Sbjct: 301 FGAYTLSK----SGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLA 356 Query: 257 DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPAD 316 D QG L RI +R+ ++ G+++P +RIR+N L+P++Y + I G + + ++ D Sbjct: 357 DANQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLD 416 Query: 317 KLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKI 376 +A+ + I+G++ +P++G+P WI A K +A +GY V+D ASV++TH+ + Sbjct: 417 HYLAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEK 476 Query: 377 VRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRALLTEGVSLRDIV 435 ++ + +L + QL + L + P L E+++ L+ + KV LL E VS+R++V Sbjct: 477 IKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLV 536 Query: 436 TIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVN 494 TI L +T D LL R AL + IT F ++ E L V T + +E + + V Sbjct: 537 TIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQ 596 Query: 495 QAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLF 554 Q + G + L +P++ ++ + EQ+ + +LL P +R + + + Sbjct: 597 QTEHGNYLSL-----EPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERY 651 Query: 555 APGLHVLSYNEVPDELELKIMGAL 578 P L VLSYNE+ +E++ +G + Sbjct: 652 FPDLPVLSYNELEANVEVQSIGVV 675 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 205/572 (35%), Positives = 333/572 (58%), Gaps = 16/572 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I ++V+ GA RISEV+ARFTLDA+PGKQM+ID DLNAGLI++A+A+ RRK +A Sbjct: 139 FLVLIAIQYVVINHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALA 198 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EA+FYGAMDGAS+F + DA+A ++I AIN+I G IG+ ++ + A + Y ++TIGD Sbjct: 199 TEAEFYGAMDGASRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGD 258 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IP+L++S + +IVTR S + + Q+L + L A G++ LA +PGMP Sbjct: 259 GLVTVIPALMISISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMP 318 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LPFL+ G GWRM K LA A + + + S E++ +EP+++ Sbjct: 319 KLPFLVLGFGAGAGGWRMRKTELAQIAAPPE------DTGKPAPAKDSVESLLRVEPLAI 372 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G L+ LV+ AQ +PL +RI +R+ ++ G LLP +R+ +N L+ +Y I + G+ Sbjct: 373 EVGLGLIGLVEGAQESPLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGV 432 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++P +A+ + ++G DPA+GM TWI A + +A + GY V+DS Sbjct: 433 EIARYELPQGCELAIATGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSV 492 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SV+ TH+++I+R Y +LF+ D +L +R+ P++ ED + L S + +V + LL Sbjct: 493 SVLGTHLSEIIRRYAHELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLL 552 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNE 484 E VS+RD V+I L + T++ ILL VR A+RR++ P++ R +L + ++ Sbjct: 553 RERVSIRDAVSILEALGEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPA 612 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E+ + V +Q + L + MLN ++ ++++ V + R Sbjct: 613 IEHAVEAAVEHGEQNSHIQLAPQHIR-EMLN-------RISARIQSPETPVVAITSSGAR 664 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 L + A P L L++NEVP + ++ +G Sbjct: 665 YFLRQIAEPTMPNLFFLAHNEVPPGVRVQSLG 696 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 205/564 (36%), Positives = 319/564 (56%), Gaps = 13/564 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+T GA R++EV ARFTLDAMPGKQMAIDADLNAGLI++A+A+ RR ++A+EADFYG Sbjct: 147 QFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEADFYG 206 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIA ++I +NLIGG+ IGI + +LS A Y L+++GDGLV+QIP Sbjct: 207 AMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVSQIP 266 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +LLLS + +IVTR + D+ DV Q+ + + + V+A++PG+P LPFL+ Sbjct: 267 ALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPFLIL 326 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 G R+ + P + E S + + E +EP+ L+L + LV Sbjct: 327 GGAALALGMRLKEPP---KPAEPQPAAEPAAPAPDSPEALVEEM--RVEPLELNLAFDLV 381 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD+++G L +R+R +R+ ++ G+++P +R R+N L P YAI +NG++ + Sbjct: 382 DLVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEA 441 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 P ++A+ E + G +P +G+P W+ + +A +G V+D ASVI TH+ Sbjct: 442 PPGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHL 499 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLKVYRALLTEGVSLR 432 ++VR L + +D+ L T P + E+L+ A L + +V + LL E V +R Sbjct: 500 AEVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIR 559 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNV 492 D+ I L + V++D L R L +I+ + + L+V T++ E L + Sbjct: 560 DLPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYAQDGRLSVLTIDPLTEQRLVDK 619 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 + + G + L DP+ + ++ E+ + G PVL LRP L R R Sbjct: 620 LRHGEHGSFLAL-----DPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVR 674 Query: 553 LFAPGLHVLSYNEVPDELELKIMG 576 P L VL+Y E+ L+L+ +G Sbjct: 675 SANPRLPVLAYGELGPHLQLETVG 698 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 353 bits (907), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 209/574 (36%), Positives = 333/574 (58%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I FIV+TKGAER+SEV ARFTLDAMPGKQM+IDADLNAGLI+ +A+ RR+ + Sbjct: 109 FLILIVIQFIVITKGAERVSEVGARFTLDAMPGKQMSIDADLNAGLISDREAKQRREKIE 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIA ++I+ IN++GG+ IG+ + + + A Y L+T+GD Sbjct: 169 HEADFYGSMDGASKFVKGDAIASIIIVIINMLGGLMIGMMQMGMDMNTAASTYTLLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+STA +IVT+ + G+++ D+ Q+LA P +LY + +L + + Sbjct: 229 GLVTQIPALLISTATGVIVTKAASEGNLSTDLSRQILAYPKLLYVTAATILLLGLATPIT 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + + LL F G+R+SK LA E++L L E S + ++PI Sbjct: 289 KVVTFSIAGLLAFAGYRLSKASLAKANFEEAL--LEEAPPEEPSGPESVVQLLQMDPIEF 346 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY L+ L D QG L R+ +R+ ++ G ++P IRIR+N L+P+ Y I + G Sbjct: 347 EFGYGLIPLADANQGGDLLDRVVMIRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGA 406 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ D MA+ + E I G++ +PA+G+P W+ + +A GY V+D Sbjct: 407 VVAKGEVLLDHYMAMSTGEQDDSIVGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPP 466 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRALL 425 +VI+TH+ ++++++ +L ++ QL + L + P L E+++ L + KV R LL Sbjct: 467 TVISTHLTEVLKAHAYELLGREETKQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLL 526 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E +S+R++ I L +TKD ++ VR AL R IT EL V TL Sbjct: 527 REQLSIRNLPVIFEALADYGPLTKDMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAA 586 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E + + + Q + G + L P D + Q+T +V +++ G+ V+L P +R Sbjct: 587 VEKKIADAIGQNENGSFLAL--APADSQAI--LQNTAKEV-QKVAELGRQAVILCSPAVR 641 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + P + V+SYNE+ ++E++ +G + Sbjct: 642 MHMRQLIERHLPYVPVVSYNELEPDVEVQSVGVV 675 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 204/563 (36%), Positives = 327/563 (58%), Gaps = 12/563 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPGKQMAIDADLNAG+I+ +AQ RR++VA +ADF+GAMDGA Sbjct: 131 TKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQADFFGAMDGA 190 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I +N++GG IG+ +Y + + + + ++IGDGLV+Q+P+ L S Sbjct: 191 SKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVSQVPAFLTS 250 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA ++ TR S ++ QL ++P L A G + VL V+ +P +P L A G Sbjct: 251 LAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPLLAIGAGCG 309 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 +S++ + EA+ + T+ +E+++ E ++P+ + +G L+ L + Sbjct: 310 GLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERI--EDFLSVDPMEIEIGAGLIRLANP 367 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L RI VRQ +++ G++LP++R+++ RL QY I I+G ++ K Sbjct: 368 KQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGEVLPGKF 427 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ S T G++ G++ DPA+ P WI + + +A MGY ++ +V+ATH+ ++VR Sbjct: 428 LAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATHLQEVVR 487 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L D L + L T+P + ++L A + S + +V + LL E VS+R++ TI Sbjct: 488 RHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSIRNLSTI 547 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE--LTVYTLNNELENLLTNVVNQ 495 L +T TKD + L VR L R+I+ + R E + V TL+ LE+ + V Sbjct: 548 LETLGDWATKTKDPVFLTEYVRNRLSRTISSRY-RDAENRMHVLTLDPALEDRIAAGVEH 606 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 +++G V L P ++ + + ++ GK P++LV PQ+R L Sbjct: 607 SERGLFVRL-----QPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNL 661 Query: 556 PGLHVLSYNEVPDELELKIMGAL 578 P LHVLS+NEV + ++ I+G + Sbjct: 662 PRLHVLSFNEVTRDTKVDILGVV 684 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 350 bits (898), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 202/561 (36%), Positives = 320/561 (57%), Gaps = 13/561 (2%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER++EV+ARFTLDAM GKQMAID+DLN G I +A RRK + E F+G+MDGA+ Sbjct: 124 KGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGSMDGAT 183 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA AG++I INLIGG+ +G+ L+ + A +Y ++TIGDGL +QIPSLL+S Sbjct: 184 KYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPSLLISL 243 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A ++VT+ S G++ ++ QL + VL + +L V +P F+ L Sbjct: 244 ATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLGMALII 303 Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL--IEPISLSLGYKLVALVD 257 G ++S A E E+ + TE SE + + L ++PI L GY ++ L D Sbjct: 304 YGRKLS----AKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLAD 359 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADK 317 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI+ E +I D Sbjct: 360 VNQGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFDH 419 Query: 318 LMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIV 377 MA+ EI G+ +P++ +P WI +Q+ +A ++GY V+D S+IATH+ +++ Sbjct: 420 YMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVI 479 Query: 378 RSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL-NYSQLLKVYRALLTEGVSLRDIVT 436 R +I +L D+ L N + L E+L L ++ KV + LL EG+S+RD+VT Sbjct: 480 RQHIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLVT 539 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLNNELENLLTNVVNQ 495 I L + VT+D +L VR AL+R+I+ + E+T V T++ +E + N V Sbjct: 540 IFETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVKN 599 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 +QG + L DP + + ++++ GK+P+++ P +R A+ + Sbjct: 600 TEQGSYLSL-----DPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYY 654 Query: 556 PGLHVLSYNEVPDELELKIMG 576 + V+SYNEV +EL+ +G Sbjct: 655 KDIIVISYNEVESNVELQSVG 675 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 195/567 (34%), Positives = 343/567 (60%), Gaps = 8/567 (1%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKG+ RI+EV+ARFTLDAMPGKQMAIDADLN GLI + +A+ +R+ + EAD+YG Sbjct: 132 NFMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDAIAG++I AIN++GG+ IG+F++++ A + ++ ++TIGDGLV+QIP Sbjct: 192 AMDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIP 251 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 SL++ST+A +IV+R + D++ + QL +S VL A I+ A+VPG+P + F+ Sbjct: 252 SLIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISI 311 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 +AL+ + + + E +EK T + + E++ + + ++ + L +G+ L+ Sbjct: 312 AALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEE-EVKNLLEMDLMELEIGFGLI 370 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD QG L RI+ +R+ I+ G ++P +RIR+N +L + Y++ + ++ I Sbjct: 371 PLVDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTI 430 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 +K + + +IDG+ +PA+G+ W+ K A GY ++D ++VIATH+ Sbjct: 431 FPEKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHL 490 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLR 432 +I++ +L + +L ++L P+L +D + + L+ + +V ++LL E VS+R Sbjct: 491 TEIIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIR 550 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNELENLLTN 491 ++ T+ VL K+ L VRL L+R IT L V+TL +++E +L + Sbjct: 551 NLQTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLAS 610 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + G +++ +DP + + S + + E+ + G P++++ P +R + R+ Sbjct: 611 SLQNTDDGQEIV-----IDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFV 665 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 F P ++++S+NE+ + + ++ +G L Sbjct: 666 EKFVPNVNIMSHNEISESVRIESLGML 692 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 343 bits (880), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 215/575 (37%), Positives = 336/575 (58%), Gaps = 31/575 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG+ RI+EV+ARFTLDA+PGKQMAIDADLNAGLI++ +A+ RR+++A Sbjct: 128 FIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIA 187 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I A+N+IGG IG+F++ +SA A Q +VL++IGD Sbjct: 188 READFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGD 247 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STAA IIV+R S ++A + + QL L + +L +VPG+P Sbjct: 248 GLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLP 307 Query: 187 HLPFLLFSALLGFTGWRMSK----------QPLAAEAEEKSLETLTRTITETSEQQVSWE 236 +PF L + G++ + QP A E E+K E + Sbjct: 308 LVPFWLLAGTTLLLGYQRRQFERREQAKPAQPEAQEPEQKPSEDPGELL----------- 356 Query: 237 TIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP 296 +++P+ L +GY L+ LVD Q L RI+ +RQ ++ G+++P +RIR+N L Sbjct: 357 ---MVDPLELEIGYGLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGA 413 Query: 297 SQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKAL 356 ++Y I I G E ++ +AL G++ DP +G+P W+ A Sbjct: 414 NRYVIKIRGNPVAEGEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAE 473 Query: 357 NMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYS 415 MG V+++ +VI TH+ +++R L + ++ +L +++ T P L E+L+ L+ Sbjct: 474 RMGLTVVEAPAVITTHLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIG 533 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ- 474 + KV + LL E + +RD+V+I L +T TK+ +L VR AL +IT F+ Sbjct: 534 AIQKVLKRLLRERIPIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDG 593 Query: 475 ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 + + L+ LE L Q + G++ ++ ++P +F ++ ++ + G+ Sbjct: 594 AIYAFVLDPILERHLL----QQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRP 649 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNE-VPD 568 PVLL P LRP+L + P L+VLSYN+ +PD Sbjct: 650 PVLLTSPVLRPVLYNFLAPSIPDLNVLSYNDLLPD 684 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 209/581 (35%), Positives = 325/581 (55%), Gaps = 32/581 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L INFIV+TKGA RI+EV+ARFTLDAMPGKQMAIDADL+AGLI++ +A+TRR ++A Sbjct: 123 FLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTRRDEIA 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 ADFYGAMDGASK+V+GDAI G++++ +N++GG+ IG+ + + A Y ++T+GD Sbjct: 183 RTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTILTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV Q+P+L++STAA ++VT ++N + + QL P ++ A G++ A++PG+P Sbjct: 243 GLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFALIPGLP 302 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP------- 239 PFL +A +K AE + LE T V E +P Sbjct: 303 MFPFLAMAAGAALLARTATK------AETRRLE------LATISAPVEMEELPPPPDPMR 350 Query: 240 ---LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP 296 I+PI L +GY L+ L+D+ QG L +RI +R+ + G+L+P IRIR++ RL Sbjct: 351 DLLQIDPIELEVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPA 410 Query: 297 SQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKAL 356 ++Y I + G + A++ LMAL + EIDG++ DP++GMP W+ +A++ +A Sbjct: 411 NEYVIKLRGSEVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAE 470 Query: 357 NMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYS 415 +GY V++ +V+ATH+ + ++ +L ++ ++ L + P L E+ + ++ S Sbjct: 471 ALGYVVVEPTTVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLS 530 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE 475 L +V + LL E V +RD+VTI L + T+D L R AL I F Q Sbjct: 531 VLHRVLQRLLRERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFA-DQT 589 Query: 476 LTV--YTLNNELENLLTNVVN-QAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 TV T+ LE+ L + + ++ Q ML P L + + G Sbjct: 590 GTVRGITIGGRLESALVGLFSPRSSQPNAPML-----TPESLAAMLRDLNHLATTYAVDG 644 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELK 573 + L+ PP LR + R P L V+S E+P ++ L Sbjct: 645 RPLPLITPPSLRVGVRRLIEPVLPSLPVISLAELPAQITLS 685 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 210/584 (35%), Positives = 333/584 (57%), Gaps = 29/584 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKGA R++EV+ARFTLD+MPGKQMAIDADLNAG I+ QAQ RRK + SEA+FYG Sbjct: 128 NFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEANFYG 187 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDG+SKFV+GDAIA ++I +NL+GG+ +G+F++NLS A + Y ++TIGDGLV+QIP Sbjct: 188 AMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLVSQIP 247 Query: 134 SLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLA-SPSVLYTATGIMFVLAVVPGMPHLPFL 191 +LLLSTA AII+TR +D+ A NQL+ S S++ G+M + A+VPG P + Sbjct: 248 ALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLM-LFALVPGFPTFILM 306 Query: 192 LFSALLGFTGW--------------RMSKQPLAAEAEE-KSLETLTRTITETSEQQVSWE 236 L+G G+ R K P + ++ + L+ RT + E Q + E Sbjct: 307 TMGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQ-TIE 365 Query: 237 TIPLIEPISLSLGYKLVALVDKAQGNP-LTQRIRGVRQVISDGNGVLLPEIRIRENFRLK 295 TI +E + L LG +L+ LV QGN L +I+ +R+ I+ G ++P+IRI ++ L Sbjct: 366 TIMKLEVLELKLGIRLLQLV---QGNSELLDKIKAIRKTIASELGFVIPQIRISDDSYLS 422 Query: 296 PSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKA 355 P++Y +++ I + I DK +A+ + ++ G+ +P + + TWI + +A Sbjct: 423 PNEYQLYLKRIPLVKGRIEVDKFLAMGGTGNE-KLQGIHVKEPVFNLDATWITGDLREEA 481 Query: 356 LNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYS 415 L G+ V+D+ ++I+TH+++I++ + D+ DI + RL P + E+ +Y Sbjct: 482 LMKGFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAMKVTSYG 541 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE 475 LLKV + LL E + + D++TI + + TK +L VR L R IT F Sbjct: 542 ALLKVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDTDG 601 Query: 476 -LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 L + T+ ++E + + ++ML ++ N++ + + + V +MK K Sbjct: 602 ILHIITIKPDVEQQFIGKLQEHHGISQLMLSIAEIN-NLVTKTKQLLDDV--EMKGFSK- 657 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++V P LR ++ F + VLS+ E+ + I G L Sbjct: 658 VCMVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 201/554 (36%), Positives = 332/554 (59%), Gaps = 16/554 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RI EV+ARFTLDAMPGKQM+IDADLNAGLI + +A+ RR+ ++ EA+FYGAMDGA Sbjct: 138 TKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSREAEFYGAMDGA 197 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 KFV GDA+AG++I+ IN+IGG+ +G+ + +S A Q Y L+T+GDGLV+QIPS +++ Sbjct: 198 GKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDGLVSQIPSFIIA 256 Query: 139 TAAAIIVTRVSDNGD-IAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL---FS 194 TA+A+IVT+ S G+ + DV QL + P+ + A GI+ + ++VPG+P +PFL+ F Sbjct: 257 TASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPKIPFLVLAGFF 316 Query: 195 ALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVA 254 ++ F R SK+ AEA K E + R +++ S E + ++ + L +GYKLV Sbjct: 317 WMMFFVLRRSSKETELAEALVKETEGMAR----EPKKEESVEGMLRVDRMELEVGYKLVP 372 Query: 255 LVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIP 314 LVD + + +RI +R I+ G+++P IR+R+N +L+ ++Y + I G + ++ Sbjct: 373 LVDPNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQEIAHGELL 432 Query: 315 ADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVN 374 +A+ S +++G++ DPAYG+P WI A K A +GY V+D ASV+ TH+ Sbjct: 433 TGSYLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPASVMITHLT 492 Query: 375 KIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRALLTEGVSLRD 433 +I++++ ++ +D+ +L + P + E+L+ ++ + ++ + LL E V +RD Sbjct: 493 EIIKTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLKEQVPIRD 552 Query: 434 IVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNELENLLTNV 492 + +I + + TKD L VR L R+I + + ++ V + + LE + N Sbjct: 553 LSSILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHLEQTIANA 612 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 +++ ++G + L DPNM ++ + ++ +G + VLL +R + R Sbjct: 613 IHKTEKGNLLAL-----DPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRLIE 667 Query: 553 LFAPGLHVLSYNEV 566 P L VLSY E+ Sbjct: 668 NALPQLAVLSYKEI 681 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 207/602 (34%), Positives = 320/602 (53%), Gaps = 39/602 (6%) Query: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 L ++ + FIV+TKGAER+SEV+ARF LDAMPGKQMAIDADL++G+I + QA+ RR+ + Sbjct: 113 LIIVLMQFIVITKGAERVSEVAARFKLDAMPGKQMAIDADLSSGMITEQQARERREKIQR 172 Query: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 E+DFYG+MDGA+K V+GD + ++ AINL+GG IGI + Y + T+GDG Sbjct: 173 ESDFYGSMDGATKIVKGDGVMSLITTAINLVGGSIIGIVQSGQPVATVLSTYSIATVGDG 232 Query: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 LV QIPSLL+S + +IVTR G + DV Q P + M VL ++PGMP Sbjct: 233 LVGQIPSLLISVSTGMIVTRAVSEGSLNEDVSKQFTQQPRSMMITGIAMGVLMLIPGMPI 292 Query: 188 LPFLL----FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL--- 240 L L F A F R+ ++P A E + L + E Q + P Sbjct: 293 LQILPVAGGFIAAGYFLEKRIKEEPERARTEGEGLLPSMEAPPQPQEAQGEAASAPAESE 352 Query: 241 ---------------IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLP- 284 +EPI + GY L+ L D++ G L QRI R+ + G ++P Sbjct: 353 EDYFKDVNNVYNLLQVEPIEMDFGYSLIPLADESVGGRLIQRIVIFRRQYAQDIGFVVPS 412 Query: 285 EIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPV 344 IR+R++ L ++Y+I I G + + +I D ++AL + IDG++ +PAYG+P Sbjct: 413 SIRLRDSSSLGTNEYSIKIKGEEIAKGEILTDYVLALEPDDVEDAIDGIETIEPAYGIPS 472 Query: 345 TWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRL 404 WI+ + +A GY VID SV+ +H+++ ++ + +L ++ +L L TAP L Sbjct: 473 KWIRPENRERAELYGYTVIDPLSVMLSHLSETIKRHAYELMTRQEVVRLVENLKKTAPEL 532 Query: 405 AED-LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVT----KDHILLAADVR 459 E+ ++Y+ L KV LL EGVS++D+ TI + + T KD + VR Sbjct: 533 CEEAFPGVISYNLLQKVLTTLLREGVSIKDLETIVETMFECISETGLPVKDTDQIVEKVR 592 Query: 460 LALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQS 519 +L+R+IT + + V TL+ LE + N + + + G + L P +L QS Sbjct: 593 ASLKRTITRMYCEDGNMKVITLDAGLERTMVNSLARGENGLYLAL-----SPELL---QS 644 Query: 520 TMPQVKEQMKA---AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 + QV E+ + P++L +R F P + VLS+NEV ++++ +G Sbjct: 645 LIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFYPNVRVLSFNEVASNVQIQAIG 704 Query: 577 AL 578 +L Sbjct: 705 SL 706 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 201/567 (35%), Positives = 334/567 (58%), Gaps = 10/567 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKG ERISEV+ARFTLDAMPGKQMAIDADLN+GLI++ +A+ RR +V Sbjct: 102 FLVLVIINFVVITKGTERISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVT 161 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA+KFVRG+A+AG++I AIN++GG+ IG+ + + A + L++IGD Sbjct: 162 EEADFYGAMDGATKFVRGEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGD 221 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP+L++STAA IIV+R S + G +A +++ QLL P L + V+ VPG+ Sbjct: 222 GLVSQIPALMVSTAAGIIVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGL 281 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P +PF L SA + + SK+ A + E + E + + L++P+ Sbjct: 282 PIIPFWLLSAGVLLLWYLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLE 341 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L +GY L++LVD QG L +R++ +R+ +++ G+++P +RIR+N + ++Y I + G Sbjct: 342 LEIGYGLISLVDPDQGGDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRG 401 Query: 306 IKADEADI-PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 E + P KL LP G++ DP +G+P W+ ++A MG VI+ Sbjct: 402 NPIGEGQVMPGYKLALLPDDVDEAP-SGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIE 460 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQLLKVYRA 423 +VI+TH+ + +R L + ++ ++ +++ +AP L ++L L+ + KV + Sbjct: 461 PPAVISTHLLEELRKNAYRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQR 520 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLN 482 LL E + +RD+VTI L ++ T+ +L R AL +IT F + + + ++ Sbjct: 521 LLEERIPIRDLVTILETLADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMD 580 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 LE +++ A+ GG + +++ + P + + + ++ + + P+LL+ P Sbjct: 581 PALEQ---HLLETAESGG-LDANTLGLQPERADALVKAIDEQATELISNDRAPILLISPV 636 Query: 543 LRPLLARYARLFAPGLHVLSYNEV-PD 568 LR + ++ + VLSYN++ PD Sbjct: 637 LRATVYQFLDPMVSDITVLSYNDLTPD 663 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 203/575 (35%), Positives = 316/575 (54%), Gaps = 24/575 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+T GA R++EV+ARF LD++PGKQMAID D NAGLI +A+A+ RR+ + Sbjct: 122 FLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLITEAEARERRRRLQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGA+KFVRGDAIA ++I+ IN++GG +G+ + A + Y L+TIG+ Sbjct: 182 READFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLTTALRTYTLLTIGE 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+ST+A ++VTR + QL A P +L+ A I +L +VPG+P Sbjct: 242 GLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAAAIFILLGLVPGLP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL---IEP 243 HL L G G+ + E E K E++ E + +EP Sbjct: 302 HLLLLSIGGATGALGYFL-------EEERKKQIKAAAPPAPPKEKRTEPENVLTYFQVEP 354 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 + + LGY LV L + QG L R+ VR+ + G+ + IRIR+N +L P+ Y + Sbjct: 355 LEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPPNVYLFRL 414 Query: 304 NGIKADEADI-PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 GI+A ++ P L P E +++G+ +P +G+P WI A K KA G+ V Sbjct: 415 RGIEAARGELMPGYYLAVSPMGEA--KLEGIATKEPVFGLPAWWISPADKEKAEAAGFTV 472 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVY 421 ++ ++V+ATH+++ ++ P L + +L + + P L E+L L ++ KV Sbjct: 473 VEPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLGEVQKVL 532 Query: 422 RALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTL 481 + LL E V ++D+V+I L ++ V++D L R AL R IT + R +L+V TL Sbjct: 533 QGLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYARDNKLSVLTL 592 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + E L+ QA++ GKV+ +P + + + Q E G PV+L P Sbjct: 593 HPRWEERLS----QAKEEGKVL------EPREVQRLLEKVGQAVEGALRRGIAPVILCAP 642 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 R LL R P + V+SY EV ++ ++ +G Sbjct: 643 GARLLLRRLIAAKFPQVAVISYREVWPQVTVEAVG 677 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 332 bits (850), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 192/568 (33%), Positives = 327/568 (57%), Gaps = 17/568 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + +V+TKGA RISEV+ARFTLDA+PGKQMAID +L++G IN+ +A+ RRK + Sbjct: 121 FIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E DFYG+MDGASKFV+GD AG++I AINL+GGV IG S A + Y TIGD Sbjct: 181 AEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL + A IIVTR D+A ++QL ++ VLY G + A +PG+P Sbjct: 241 GLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLP 300 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +P ++ SA + + G+ + + + + +S+E + + + + +E + +PI + Sbjct: 301 FIPLVILSAGIAYLGYSLEQ---TVKEQLESIEKKEKESGQDRKPKDFYEELR-TDPIEI 356 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD +QG L +I +R+ + NGV++P +RI +N L P Y+I ING Sbjct: 357 EVGYHLIPLVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGT 416 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGND---PAYGMPVTWIQAAQKAKALNMGYQVI 363 + + + DKLMAL +S G + +QG D P++G WI + K++A GY V+ Sbjct: 417 EVGISTVKPDKLMALNTSP--GTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVV 474 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL--NYSQLLKVY 421 D+++V+ TH+ +++ ++ L +++ +L + ++ P L +L A N + +V Sbjct: 475 DASTVVVTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVL 534 Query: 422 RALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYT 480 + LL EG+ +R++V I + + + ++ +L VR ++ R++ ++ +L V T Sbjct: 535 QNLLREGLGIRNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVIT 594 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 L + + + L + Q + + D + + P+ + ++ ++ + GK P+ +V Sbjct: 595 LESRILDRLNKSITQDRIENR---DVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVN 651 Query: 541 PQLR-PLLARYARLFAP-GLHVLSYNEV 566 +R P A+ F P VL+Y E+ Sbjct: 652 RDVRLPFSYLLAKEFPPRNFGVLAYEEI 679 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 331 bits (848), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 205/571 (35%), Positives = 315/571 (55%), Gaps = 30/571 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ IN +VVTKGA R+SEVSARFTLDA+PGKQMAIDADL AGL+ +A+ RR+++A Sbjct: 119 FLILMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIA 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFV+GDA+A ++IL IN+I G+ +GI + L+A A + YV + +GD Sbjct: 179 TEADFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 LVA +P+LLLS AAA+IVTRVSD D+ + Q LA P + I+FV+ +P MP Sbjct: 239 ALVASVPALLLSIAAAVIVTRVSDARDLTGQIGGQ-LADPKIWLPVACILFVIGCIPAMP 297 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTR------TITETSEQQVSWETIPL 240 L S+ + +R+ K EA ++ E + TI E ++Q + Sbjct: 298 QSIILPLSSGTFYLWFRLRKN---HEARKEMPEPEAKPDPSHITIEEVTDQTL------- 347 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 +++ LGY L++L D +G L R+ G+R+ + G ++P+ RI ++F L P Y Sbjct: 348 ---VTVQLGYGLISLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYR 404 Query: 301 IFINGIKADEADIPADKLMALPSSETYGE--IDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 I + G I L+A+ + E G + G+ DP++G P WI+ + A+ Sbjct: 405 ITLGGATLGGGKINPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAE 464 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA-ALNYSQL 417 GY +D SVIAT V++++ + DL D + L L + +L + ++ L+ + L Sbjct: 465 GYLTVDPESVIATQVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAAL 524 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-EL 476 ++ R+LL +G+SLR + + + + ++ T +H L VR L I +L Sbjct: 525 TRLLRSLLADGISLRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKL 584 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 V TL LE ++T + G + ++P++ + + Q A P Sbjct: 585 PVITLAARLEEMVTGGLQDPSSG------EIIIEPDLARSIGERIAAIIGQRDPAATRPA 638 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVP 567 L+V P+ R L+ RL AP VLS NE+P Sbjct: 639 LIVQPRARRALSALLRLRAPQCLVLSINELP 669 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 331 bits (848), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 201/551 (36%), Positives = 311/551 (56%), Gaps = 12/551 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPG+QMAIDADLNAG+I++ +AQ RR ++ +ADF+GAMDGA Sbjct: 135 TKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQADFFGAMDGA 194 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I IN++GG IG+ + +S A + Y +TIGDGLV+Q+P+ L+S Sbjct: 195 SKFVRGDAIAGIIITLINIVGGFIIGL-QAGMSLAEAAEVYTKLTIGDGLVSQVPAFLIS 253 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL-LFSALL 197 AA ++VTR S ++ + QLL+ P L A G L V G+P +P L L L Sbjct: 254 LAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVA-GAFLGLLVFTGLPTIPLLTLCGGCL 312 Query: 198 GFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 G + + KQ EA++++ ET + + ++++ E I+P+ + LG LV L Sbjct: 313 GI-AFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGVGLVRLAA 371 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADK 317 +G L R+ GVRQ ++ G++LP++RIR+N RL +QY I I E I D+ Sbjct: 372 PDRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAENTIYPDR 431 Query: 318 LMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIV 377 L+A+ + G + G DPAY P WI+ + +A +GY +++ +SV+ATH+ ++ Sbjct: 432 LLAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLATHLQRVA 491 Query: 378 RSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVT 436 + + +L D L + L +P + ++L + + V LL E V +R + Sbjct: 492 KKHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEVPIRQLAI 551 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNELENLLTNVVNQ 495 I L + TKD I L VR L R+I + R+ ++ V L+ +++ + ++ Sbjct: 552 ILETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDRIAAGID- 610 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 ++G + P + + E++ A GK P++LV PQ+RP L + Sbjct: 611 TERGPYARM-----SPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNHI 665 Query: 556 PGLHVLSYNEV 566 P L VLS+NEV Sbjct: 666 PDLIVLSHNEV 676 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 206/593 (34%), Positives = 322/593 (54%), Gaps = 42/593 (7%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T G+ R++EV ARF LDAMPGKQMAIDADLN+GLI+ +A+ RR ++ EADFYGAMDGA Sbjct: 146 TNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEAKKRRAALSQEADFYGAMDGA 205 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIA ++I IN+IGG +G+F+ ++S + + ++TIGDGLV QIP+L+++ Sbjct: 206 SKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGDGLVGQIPALIIA 265 Query: 139 TAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSAL 196 TA I+ TR + N D A + QL L + + A +PG+P L Sbjct: 266 TATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANLLLFATIPGLPTFSLAFVGTL 325 Query: 197 LGFTGWRMSKQ------------------------PLAAEAEEKSLETLTRTITETS-EQ 231 F W +S++ P +++ + + T T+T E E+ Sbjct: 326 FLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSKIKPHAPTTKTKTPEEIKREE 385 Query: 232 QVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIREN 291 + + + + IE + L+LGY+L++L D QG L +RIRG+R+ I+ G L+P+IRIR+N Sbjct: 386 EQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDN 445 Query: 292 FRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQ 351 +L P+ Y I + GI E + DK +A+ + EI+G+ +PA+GM WI A Sbjct: 446 LQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKN 505 Query: 352 KAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA 411 K +A+ GY +ID ++VIATH +++V+ Y D D++ L RL+ P + E+ S Sbjct: 506 KEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEE-SKK 564 Query: 412 LNYSQLLKVYRALLTEGVSLRDIVTI-ATVLVASSTVTKDHILLAADVRLALRRSITHPF 470 + + V +ALL E + ++D++TI T+ + V D +L VR L R IT+ F Sbjct: 565 IPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAF 624 Query: 471 VRKQ-ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQ-M 528 + L T + + E L N + + ++L+ + + Q + V E+ M Sbjct: 625 KSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLN--------VGELQKLIEGVSEEAM 676 Query: 529 KA--AGKDPV-LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 K G PV L+V P LR L+ + VLS+ E+ + +G + Sbjct: 677 KVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTI 729 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 193/562 (34%), Positives = 314/562 (55%), Gaps = 16/562 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L LL +NF V+TKG+ R+SEV+ARFTLDA+PGKQMAIDADL AGL++ +A+ RR+ + Sbjct: 125 FLILLIVNFTVITKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +F+GAMDGASKFVRGDA+AG+ I +N++GG+ G+ + +LS A + Y L+T+GD Sbjct: 185 RETEFFGAMDGASKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+Q+P+LL+STAA ++VTR + + D+ V +Q+L P VL T G++ L ++PGMP Sbjct: 245 GLVSQMPALLVSTAAGLVVTRAAGS-DLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F + A + + + + ++ + L Sbjct: 304 LVAFGGVAG--------ALLLAARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALEL 355 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY LV L+D +G L R+ +R+ ++ G++LP + +R++ RL P QY + + G+ Sbjct: 356 GVGYGLVPLIDLDKGGELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGV 415 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++LMAL + ++GV G DPA+G+ WI A + +A +G ++D+A Sbjct: 416 ELGRGLAHPERLMALDPNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAA 475 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SVI TH+++++R ++ ++ +L L AP+L ED + A++ +L++V R LL Sbjct: 476 SVITTHLSELLRRNAHEIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLL 535 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLNNE 484 EGVS+RD+ T+ + ++ +K+ L R L R +T + TL+ Sbjct: 536 REGVSVRDLRTVLEAVADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRS 595 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E L + A G + V ++ +S ++ AG+ VLL PP LR Sbjct: 596 TEETLRATLG-ASDGEAALAPDVETARRLVASLESG----ATRLTGAGQPVVLLAPPDLR 650 Query: 545 PLLARYARLFAPGLHVLSYNEV 566 L +A F P + VL+ E+ Sbjct: 651 RPLFDFASRFVPDVQVLAAREL 672 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 204/578 (35%), Positives = 323/578 (55%), Gaps = 23/578 (3%) Query: 15 FIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGA 74 F+V+TKG ERISEV+ARFTLDAMPGKQM+IDAD+++GLIN+ +A+ RR+D+ EADFYGA Sbjct: 124 FLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREADFYGA 183 Query: 75 MDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPS 134 MDGASKFVRGDAIAG++I INL+GG+ IG+ + L+ A + + L+T+GDGLVAQIP+ Sbjct: 184 MDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLVAQIPA 243 Query: 135 LLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 LL+ST+A +IV+R + + D+ QL + VL A GI+ VL ++ +P P L+ Sbjct: 244 LLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFPSLILG 303 Query: 195 ALLGFTGW--RMSKQPLAAEAEEKSLETLTRTITETSEQQ-VSWETI-PLIEP------- 243 A L F + R ++ LA E + + + +E++ VS PL P Sbjct: 304 AGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEEVSEVL 363 Query: 244 ----ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 I + +GY L+ L D QG L RI VR+ ++ G+++ IRIR++ L ++Y Sbjct: 364 QGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLLSSNEY 423 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 I + G++ ++ D+L+A+ S E+ G++ +PA+G+ WI + K +A+ G Sbjct: 424 VIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEEAIEKG 483 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLL 418 Y +D+ SV ATH+++ ++ Y ++ +I L + L L + L L +L Sbjct: 484 YTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLKMHELK 543 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHIL-LAADVRLALRRSITHPFVRKQ-EL 476 KV LL E VS+R++ I L+ + ++I L VR +L R I EL Sbjct: 544 KVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKSDDGEL 603 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 V L+ +E L+ + + G ++L +P N + + E M G +P+ Sbjct: 604 HVSALDPTIEKKLSESIRDSDSGRVIIL-----EPEYSNILVQRISKSLENMMMKGFNPI 658 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 L+ +R AR+ F + +++Y E+P + L + Sbjct: 659 LICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNV 696 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 327 bits (839), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 204/571 (35%), Positives = 320/571 (56%), Gaps = 38/571 (6%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 LL +NF+V+TKG+ RI+EV+ARF LD+MPGKQMAIDADL++G IN+ A+ +RK++ E+ Sbjct: 172 LLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAINERTARAKRKELEDES 231 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 FYGAMDGA+KFVRGDAIAG++I AIN++GG+ IGI ++++ A + +T+GDGLV Sbjct: 232 AFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSEAASTFTTLTVGDGLV 291 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 +QIP+LL+STAA I+VT+ +G + QL +P L A G+ + A++PG+P LP Sbjct: 292 SQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGGLSALFAIMPGLPALP 351 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS---- 245 FL+ + G W K P+ + +T+ S Q P PIS Sbjct: 352 FLVIAVGAGIGAWMRHKTPVKDGDGD---------VTQISPQ-------PTAPPISEMLK 395 Query: 246 -----LSLGYKLVALVDKAQGNP-LTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 L LG+ L+ L NP LT++I+ +R+ ++ G + P +RI++N L Y Sbjct: 396 LDLLRLELGFGLLPLTSGE--NPQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDNY 453 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 I + I+ ++ KLMA+ S ++ G + +PA+G+P WI + K KA+ M Sbjct: 454 VIKLKEIEIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAMK 513 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLL 418 ++D ASVI TH+++ VR +PDL Y L + L +L DL + + S + Sbjct: 514 CTIVDPASVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTIQ 573 Query: 419 KVYRALLTEGVSLRDIVTI-ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-L 476 +V ++LL E VS+RD+ TI ++ S + L VR+ L R I + V + Sbjct: 574 RVLQSLLAERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGYI 633 Query: 477 TVYTLNNELE-NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 + TL+ E E + ++ QA + + P+MLN+F + +V + A+G+ P Sbjct: 634 PMITLSAEWEAEFMAHITGQADD------RRLAMPPSMLNKFVGKLREVFNTVSASGEIP 687 Query: 536 VLLVPPQLRPLLARYARLFAPGLHVLSYNEV 566 V++V +R + P + VLS +E+ Sbjct: 688 VVVVSTPVRDSMRSIVERVRPSVSVLSQSEI 718 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 218/574 (37%), Positives = 345/574 (60%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INFIV+TKGA RI+EVSARFTLDAMPGKQM+IDADLNAGLI++ +A+ RR++++ Sbjct: 119 FLILVIINFIVITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEIS 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIA ++I+ IN+IGG+ IG+ + + A Q YV++TIGD Sbjct: 179 READFYGAMDGASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL AQ+P+L+ STAA I+V+R + ++ D+ QL +P L TA+G++ +L ++PG+P Sbjct: 239 GLAAQVPALITSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLP 298 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPF++ + + G + M ++ E +EK + + E++ ++PISL Sbjct: 299 HLPFIIIAVVSGAIAYLM----ISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISL 354 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LV+ + L +RIR +R+ I+ G ++P I I++N LKPSQY+I I G+ Sbjct: 355 EIGYNLIPLVEGE--SSLVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGV 412 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++I + +A+ + +IDG+ DPA+G+ WI+ +KA +G+ V+D++ Sbjct: 413 EIATSEIILGRFLAI-GARPGQDIDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDAS 471 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVI TH+ +++++Y +L + +L + L+ T PR+ +DL L SQ+ KV + LL Sbjct: 472 SVIVTHLREVLKNYGYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLL 531 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNE 484 E VS++D+ TI L + VTKD +L VR AL R IT ++ Sbjct: 532 RERVSIKDLQTILETLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPS 591 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE + QG + DP ++ + + ++ ++ G PVL+ +R Sbjct: 592 LERTFIESLQTTPQG-----INFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIR 646 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + R AP L VLS E+ +++ + G + Sbjct: 647 RFIKRAIERIAPSLPVLSPQEIAPGVKILMFGTV 680 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 210/570 (36%), Positives = 331/570 (58%), Gaps = 14/570 (2%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ INF+V+TKG+ RI+EV+ARF+LDAMPGKQMAIDADLNAG+INQ QA+ RR+ +++EA Sbjct: 136 LVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMINQEQAKKRRELISAEA 195 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 DFYG+MDGASKFVRGDAIA ++I+ INLIGG+ +G+F++ +S +A Y L++IGDGLV Sbjct: 196 DFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSSAAHTYTLLSIGDGLV 255 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMF-VLAVVPGMPHL 188 AQIPSL++S AA ++V+R SD+ ++ H V QL T I+ + ++PGMPH Sbjct: 256 AQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTAIILGITGIIPGMPHW 315 Query: 189 PFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSL 248 FLL++ L G + W + ++ EAE+ S T E+ + + +EPI L++ Sbjct: 316 AFLLYALLTG-SIWYVLQRSKVREAEQVSATTAAEA-PAVVEEPIDARVLKRVEPIGLAI 373 Query: 249 GYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKA 308 GY+L+ L+ K L +R+ +R+ IS+ G +LP I + ++ L+P Y I I+GI Sbjct: 374 GYQLIPLMQK--DGELQKRLNLLRRRISESAGFVLPAIHVTDDLTLRPGGYRIEIHGIGE 431 Query: 309 DEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASV 368 ++ AD+L+A+PS I G + DP YG WI + A +GY V+D+A+V Sbjct: 432 AHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDAELLGYTVLDAATV 491 Query: 369 IATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTE 427 + TH++++++ ++ D+F +L + ++ +L + + + +L KV R L+ E Sbjct: 492 VTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTAPKLTKVLRDLVRE 551 Query: 428 GVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV----RKQELTVYTLNN 483 VSLRDI I L L +R L R I + R L ++ Sbjct: 552 QVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGRDRGAPLQAAVMSP 611 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E++++L + A + ++P++L + Q QM+ PV+LV + Sbjct: 612 EMDSVLQTAIQTAAA----AGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMRPVILVRDAI 667 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELK 573 R L+ + R + VL + EVP E+++K Sbjct: 668 RYALSGWLRSAGIVVPVLGFAEVPGEIQVK 697 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/576 (33%), Positives = 329/576 (57%), Gaps = 13/576 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+VV+ GA R +EV+ARFTLDA+PGKQMAIDAD+NAGLIN+A A+ RR+ +A Sbjct: 132 FIALIAIQFLVVSHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIA 191 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA++F + D++A ++I IN++ G+ IG ++ ++ A + Y ++T+GD Sbjct: 192 QEAEFYGAMDGAARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IPSLL+S A I++TR S G + ++ QL + LY A+G++ L +VPG+P Sbjct: 252 GLVTMIPSLLVSVAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLP 311 Query: 187 HLPFLLFSALLGFTGWRMSK-QPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 L FL+ + +L G ++K QP AEE + + + +++ ++ +S Sbjct: 312 KLAFLVPAVILAGIGRTVTKEQPAEEAAEEAGKKA-------DPSRADNLDSVLKVDDLS 364 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L +G++L+ LVD+AQG + R+R +R+ ++ G L+P + I +N RLKP +Y + + G Sbjct: 365 LEIGFQLIPLVDEAQGGLMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRG 424 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 ++ A++L+A+ + + G + +PA+G WI + +AL GY V+D Sbjct: 425 LEIGRWQTEANQLLAVSNEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDP 484 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRAL 424 A+ I+TH+ +++R++ +L + + +L + L+ + P+L E+L ++ ++ KV + L Sbjct: 485 ATAISTHLAELIRTHAHELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQL 544 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNN 483 L E VS+RD+ TI LV + + + VR AL R +T + L V L Sbjct: 545 LREQVSIRDLGTILETLVEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEP 604 Query: 484 ELENLLTNVVNQAQQGGKVMLD-SVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 LE L Q++ +LD P + + ++ ++ + ++ PVLL Sbjct: 605 ALEEALI-AATQSEPPTDALLDRRTPASAQLFARISESLKKLSQNHPSSAL-PVLLCQSP 662 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L R+ P + VL+ E+ E+ + +G L Sbjct: 663 ARYYLRRWLEPVFPRITVLAPPEIGPEIRVHSIGVL 698 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 197/569 (34%), Positives = 316/569 (55%), Gaps = 26/569 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF V++ G+ RI+EV ARF LDAMPGKQMAIDADLN+GLI++ QA+ RR ++ EA+FYG Sbjct: 143 NFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQAKKRRLEIHKEAEFYG 202 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKF+RGDAIAG++I+ +N+IGG+ IGI +Y +S A + Y ++TIGDGLV+QIP Sbjct: 203 SMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIKIYSILTIGDGLVSQIP 262 Query: 134 SLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 SL++S A+ II+TR SD +I + Q+ + V++ ++ I ++PGMP+ FL Sbjct: 263 SLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIFCFFGLIPGMPNFIFLF 322 Query: 193 FSALLGFTGWRMS-KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYK 251 FS L W ++ ++ + + + I +SW I + + + L Sbjct: 323 FSVLFFILSWYINYRKNINKNFSKILKFKKRKKI------DISWNDIEFEDLLRIELSSI 376 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 L + + N L ++++ +R+ I+ G LLPEI I N +L QY IFI G++ Sbjct: 377 FFKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYKIFIKGVELFSG 436 Query: 312 DIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIAT 371 I DKL+ + I G++ D + PV WI K LN +DS +I Sbjct: 437 FIFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKIVFLDSNVLIIK 496 Query: 372 HVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAE----DLSAALNYSQLLKVYRALLTE 427 + NKI+R+ + +LF + + QL +R+S P+L + +L + + + +L + LL + Sbjct: 497 NFNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQNIL---QNLLKD 553 Query: 428 GVSLRDIVTIATVLVASSTVTKDHI-LLAADVRLALRRSITHPFVRKQE-LTVYTLNNEL 485 +S++DI TI L+ S+ K++I L +R+AL+ IT F K + + V L+ Sbjct: 554 DISIKDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYINVIGLSTNF 613 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 EN+L V + + + ++ + + Q K + VLLV P++R Sbjct: 614 ENILLKFVGNNKNQIEPIFSEKLIEKTK----SAIILQKKNNLPV-----VLLVNPKIRV 664 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKI 574 LL+ + L VLS++E+ + +KI Sbjct: 665 LLSNFFLNCNIILPVLSFSEISENRVIKI 693 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 201/569 (35%), Positives = 330/569 (57%), Gaps = 16/569 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ + ++VVT GA+R++EV+ARFTLD+MPGKQM+IDAD+N GLI++ +A+ RR+++ Sbjct: 120 FLILIVVQYVVVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIAG++I+ I++IGG+ +GI + LS A Y L+T+GD Sbjct: 180 REASFYGAMDGASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIP+L++STA II+TR + + + ++ Q+ P L T + L ++PG+P Sbjct: 240 GIVTQIPALVISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP + ++L+ KQ EAE+ + E +E+ + +E + +EP+ + Sbjct: 300 ALPIFIVASLMAALVVYAFKQNKYQEAEDNVED------QEDAEKDI-YEELK-VEPLEI 351 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLG + + ++G L I+ +R+ ++ G +LP ++I + R +Y + ++G Sbjct: 352 SLGPSIAGYLGASEG-ALMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGA 410 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + E ++ +D+++A+ + + ++ GV DP YG+P WI+ K KA ++D Sbjct: 411 QVAEGELYSDRILAISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPL 470 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ THVN+ VR P L + +L R+ + L E+L L S + KV + LL Sbjct: 471 TVMLTHVNETVRLQAPALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLL 530 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNE 484 E VS+R+I IA LV + V+KDH LA VR L I V + + L V +++ Sbjct: 531 QEKVSIRNIELIAEALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPG 590 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E L+ + + +QG S+ VDP + Q S++ + E+M A G PVL+ P +R Sbjct: 591 IEQLMQSGIRVTEQGA-----SLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVR 645 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELK 573 + + + P L VL+ EVP + +K Sbjct: 646 RHIRKLSGRLLPHLTVLALTEVPVGMNIK 674 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 216/592 (36%), Positives = 337/592 (56%), Gaps = 36/592 (6%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ INF+VVTKG+ R+SEV ARFTLDAMPGKQMAIDADLNAGLI++ A+ RR++V +EA Sbjct: 138 LVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEA 197 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 +FYGAMDG+SKF++GDA+AG++I IN+IGG IG F+++++ A Y ++TIGDGLV Sbjct: 198 NFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLV 257 Query: 130 AQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHL 188 +QIP L+ STA AII+TR S D + A QLL+ L ++F+ A+VPG+P L Sbjct: 258 SQIPGLITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTL 317 Query: 189 PFLLFSALLGFTGWRMSKQ---------------PLAAEAEEKSLETLT------RTITE 227 L F AL+ + ++KQ P AA A + T Sbjct: 318 S-LGFMALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEI 376 Query: 228 TSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIR 287 E++ I +E + L LGY L+ L + N LT+RIR +R+ I++ G L+P+IR Sbjct: 377 LKEEEHKINDILKVEILELELGYGLIKLAE----NELTERIRSMRRSIAESLGFLMPKIR 432 Query: 288 IRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWI 347 IR+N RLKP++Y+ + G+ A+I DK +A+ S EI+G+ +PA+ WI Sbjct: 433 IRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWI 492 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 A K +A GY VID ASVI+TH++++++++ +L ++ L +++ + P + E Sbjct: 493 DANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEG 552 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 S + K+ + LL + ++D++TI + + V+K ++ VR +L R IT Sbjct: 553 ALGVAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMIT 612 Query: 468 HPFV-RKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 + ++ K L ++ L++ +L V Q + G + SV +++ ++ + V Sbjct: 613 NMYLDDKGNLDIFILDSASSAVLMENV-QFRDGSYHLPLSVAQTGTLVDTLRAEVAAV-- 669 Query: 527 QMKAAG--KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 A G K +L V PQLR +A F+ + VLS+ E+ + G Sbjct: 670 ---ANGRIKPFILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEG 718 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 209/586 (35%), Positives = 329/586 (56%), Gaps = 45/586 (7%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + F+V+T G+ R+SEV+ARFTLDAMPGKQM+IDADLNAG+I+ A+ RRK++ EADFY Sbjct: 121 VQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEADFY 180 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+MDGA+KFV+GDAIAG+++ AIN+IGG+ IG N++ A Q YV +TIGDGLV+QI Sbjct: 181 GSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLVSQI 240 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 P+LL+ST+A IIVTR S + + V QL A P + ++ VL ++PG+P F Sbjct: 241 PALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPAF-- 298 Query: 193 FSALLG------FTGWRMS--------KQPLAAEAEEKSLETLTRTITETSEQQVSWETI 238 FS +G F G ++P ++ +E +T I Sbjct: 299 FSLGIGAIAAGYFLGREKKDTLEDLEFEKPDMVNPDKNEVEDVTNLIN------------ 346 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 +E I + +GY L++L D++ G L QRI +R+ + G+++ IRIR+N +L P+Q Sbjct: 347 --VESIEVEIGYGLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQ 404 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y I I G +I + ++ + I G++ +P +G+ WI++ + A Sbjct: 405 YNIKIKGNVVGGYEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIK 464 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQL----HNRLSSTAPRLAEDLSAALNY 414 GY V+DS++++ TH+ I++S +L ++ + S+ L DL + Sbjct: 465 GYTVVDSSTILITHLLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDL---MTL 521 Query: 415 SQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ 474 ++ KV + LL E V+++D VTI L S TKD LL VR+AL RSI + V Sbjct: 522 GEIQKVLKNLLREKVNIKDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDD 581 Query: 475 E-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVP-VDPNMLNQFQSTMPQVKEQMKAAG 532 + + V TL+ E E L++N + ++ G + P VDP N+ ++ +V + Sbjct: 582 KTIVVATLSPETEELVSNNLQRSVNG------TYPAVDPENTNKIFESIQEVMNNVYFNH 635 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 PV++V P++R + + P L VLS NE+P+++++K G + Sbjct: 636 NIPVIVVSPKIRAPFRKLVEIVYPNLTVLSLNEIPNDIKIKAEGVV 681 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 180/559 (32%), Positives = 313/559 (55%), Gaps = 12/559 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA R++EV+ARF LDA+PGKQMAID+ ++G + + +A ++ D+ SE +FYGAMDGA Sbjct: 142 TKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQSEVNFYGAMDGA 201 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV G+ G +I IN++GG+ +GI L+ + A YV +T+GDGLV+Q+PSLL+S Sbjct: 202 SKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGDGLVSQLPSLLIS 261 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 T+ +IVTR ++ +Q + + +G + LA +PG P L + S + Sbjct: 262 TSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFPTLILMFLSLSIA 321 Query: 199 FTGWRMSKQPLAAEAEEK-SLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 F + +S E ++K LE +I S++ VS +PL +P++L +GY LV +VD Sbjct: 322 FLAYSLSGIRQKEEIDKKMKLEEEQASI--YSDKDVS-PVVPL-DPLALEIGYNLVPIVD 377 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADK 317 + + L RI +R+ I+ G+++P+IRI +N RL+P+ Y+ + G++ +I K Sbjct: 378 DTKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVGRGEIKLGK 437 Query: 318 LMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIV 377 + + G IDG DP++G+P W+ + A +GY V+D S+IATH+ +++ Sbjct: 438 FLVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSIIATHMTELI 496 Query: 378 RSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + + ++ D+ + + E++ + ++ +V + LL E VS+R++VTI Sbjct: 497 KRHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKNFSVGEIQRVLQGLLKEQVSIRNLVTI 556 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 + +++TKD L R ++ R IT ++ EL V TLN E + +++ Sbjct: 557 FETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQM---IIDSR 613 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 + ++ S +DPN+ +F + ++ +++A G PV+L RP++ P Sbjct: 614 VESNHDLISS--IDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITSREIP 671 Query: 557 GLHVLSYNEVPDELELKIM 575 L V+S EVP +++ ++ Sbjct: 672 DLVVMSVLEVPQNIKVNVL 690 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 183/570 (32%), Positives = 298/570 (52%), Gaps = 8/570 (1%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ INF+V+TKG+ RI+EVSARF+LD+MPGKQMAIDADL AGLI++ +A+TRRK + E+ Sbjct: 136 LVVINFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLEDES 195 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 F+GAMDGASKFVRGDA+AG++I IN+IGG+ IG+ +Y+LS A Y +TIGDGLV Sbjct: 196 GFFGAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGDGLV 255 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 Q+P+L++S AA +IVT+ G V QL P LY A G++ + ++PG P + Sbjct: 256 TQVPALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFPTIV 315 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 F L+ GW + +Q + + E ++++ T+ L + + L +G Sbjct: 316 FFALGGLMAGLGWYIGQQEERLAEDRRRAEIEKERAGAAAKEETVQSTMKL-DDLRLEMG 374 Query: 250 YKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKAD 309 LV L+ A L +I+ +R + + G +LP +RI + L + YA+ + G++ Sbjct: 375 EALVPLMSAADA-ALPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGVEVA 433 Query: 310 EADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVI 369 ++ + +M + S+ ++ G DP +G+ WIQ Q +A GY V+D SVI Sbjct: 434 RGEVRPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPESVI 493 Query: 370 ATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGV 429 TH+ ++V+ ++PDL Y L L +L ++ + V + LL E V Sbjct: 494 TTHLTEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGEIGGTSPAIMIQHVLQGLLGERV 553 Query: 430 SLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLNNELENL 488 S+R++ I + + T + + VR L I + + V TL+ + + Sbjct: 554 SVRNLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKWDQE 613 Query: 489 LTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLA 548 + + +++ P + +F + + A + P +LV P R + Sbjct: 614 FVDSIRMNGDDKTLIM-----SPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARSFIR 668 Query: 549 RYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +P V+S+NEV L+ + + Sbjct: 669 NMLERVSPMTQVISHNEVHRNANLRTLATI 698 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 313 bits (803), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 197/596 (33%), Positives = 313/596 (52%), Gaps = 37/596 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EVSARFTLDA+PGKQMAIDA+LNAG+I++ QA RR V Sbjct: 109 FLILVVINFVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I +N+IGG IG+ + LS + Q++ L++IGD Sbjct: 169 KEADFYGAMDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+LS AA ++VTR S+N ++ H + Q+ P + A G++ ++PGMP Sbjct: 229 GLVSQIPSLVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKS----------------------LETLTRT 224 LPF +A F G + Q E+K+ Sbjct: 289 LLPFAGLAAFSWFLGKMLKDQ------EDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAA 342 Query: 225 ITETSEQQVSWETIPLIE--PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVL 282 + + LIE ++ LGY L+ L + G L R+ GVR+ ++ G++ Sbjct: 343 GAAAPASGPTEDVRKLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIV 402 Query: 283 LPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGM 342 +P + +R+N L+P+ Y + G + ++ +A+ + + + GV ++P + + Sbjct: 403 VPPVAVRDNLELEPNDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNL 462 Query: 343 PVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAP 402 TWI +K A GY V+D ASV+ TH+++ +++ L ++ L + L T P Sbjct: 463 EATWIDEPEKKTAEINGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQP 522 Query: 403 RL-AEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLA 461 L AE L + + +V + LL E +S+ ++ I + ++++K+ L+ +R Sbjct: 523 ALVAELLPDLVTLGIIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRR 582 Query: 462 LRRSITHPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQST 520 L F VR + T++ E L V ++ + L DP Sbjct: 583 LGLYFVPEFEVRPGVVRAVTVDPRFEQWLGTKVQRSPTEVGLAL-----DPATTRHVLDE 637 Query: 521 MPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 + + ++ A G VL+V ++R L R+ P L VL++ E+P E++ G Sbjct: 638 LNRRIAELTAQGHPTVLVVSSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAG 693 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 303 bits (777), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 200/572 (34%), Positives = 310/572 (54%), Gaps = 21/572 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGA R+SEV+ARFTLD++PGKQMAIDA++NAG+I++A+A+ RR + Sbjct: 133 FLILIVIQFVVITKGAGRVSEVAARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLM 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E++FYG MDGAS+FVRGDA+A ++I AINL GG IG+ K + A ++Y ++TIGD Sbjct: 193 RESEFYGTMDGASRFVRGDAVAAIIITAINLFGGFIIGLTK-GMPLAEAVRRYSILTIGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L+ +TA+A++VT+ + + ++ Q A+ A I+ LA+VPGMP Sbjct: 252 GLVTQIPALITATASAMLVTKATSGTSLGEELGGQFSAASGPFRLAAFILIALALVPGMP 311 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP--I 244 LPFL L RMS+ P A + S+ V ++ + Sbjct: 312 MLPFLALGVALLLLSRRMSRVPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRV 371 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 SL +G L+ +V +G L RI G+R+ ++ +G+ +P +R+R+N +L P Y I + Sbjct: 372 SLEIGAALIPMVSARRGPGLIDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLG 431 Query: 305 GIKADEADIPADKLMAL-PSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + D+ D +A+ P + G +PA+G+P WI A + +A G+ V+ Sbjct: 432 GREVARGDVRPDLWLAIDPGGAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVV 491 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 DS +VI TH+ ++VR + +L DD+ + +R+ T P + +DL ++ L +V Sbjct: 492 DSPNVIITHLGEVVRRHAGELLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLT 551 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTL 481 LL E V + ++ I L A + KD LA VR+ L R++ F + L Sbjct: 552 QLLDERVPISNLPRILESLAAHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVL 611 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + LE L V Q + +DP+ L Q + + A G + LL Sbjct: 612 DPRLELDLKRAVQNNQ---------LIIDPSRLEQLTMRVAAELRKAGARGYEAALLCDA 662 Query: 542 QLRPLLARYARLFAPGLH---VLSYNEVPDEL 570 LR L R++ A LH V+SY E+P +L Sbjct: 663 GLRRAL-RHS--LARALHDLSVVSYQEIPTDL 691 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 207/621 (33%), Positives = 328/621 (52%), Gaps = 68/621 (10%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVT G+ R+SEV ARFTLDAMPGKQMAIDADLN GLI Q +A+ RR ++A+EADFYG Sbjct: 142 NFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFYG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGA+KFV+GDAIAG++I IN+IGG IG+F+ ++S A + ++TIGDGLV+Q+P Sbjct: 202 SMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQLP 261 Query: 134 SLLLSTAAAIIVTRVSDNGD-IAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 +L++STA IIVTR S G+ A + +QL+ L I+ + A+VPG+P + Sbjct: 262 ALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLPTIS--- 318 Query: 193 FSALLGFTG------------------WR----MSKQPLAAEAEEKSLETLTRTITETSE 230 LGF G W+ + K+ +AEE R S Sbjct: 319 ----LGFVGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASG 374 Query: 231 QQV---SWETIPLIEP-----------------------ISLSLGYKLVALVDKAQGNPL 264 Q + + P +P + + LGY+L+ D AQG L Sbjct: 375 GQTPQNAQQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGEL 434 Query: 265 TQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSS 324 +IR +R+ ++ G+L+P + +R++ L P +Y I + I+ + I DK +A+ SS Sbjct: 435 VNKIRAIRKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASS 494 Query: 325 ETYGEI-DGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD 383 GE+ DG+ +P +G+ WI +K A+ GY +ID A+VI+TH+ ++++ Y + Sbjct: 495 GFVGELPDGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEE 554 Query: 384 LFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVA 443 L ++ L +L P LAE++ + + + + LL E + ++D+++IA + Sbjct: 555 LLTRQEVANLVAKLGQDYPILAEEIK-GVGIGTIQHILKELLHEQIPIKDMLSIAEAIAD 613 Query: 444 SSTVTK-DHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGK 501 K D L+ VR L+R ITH F L + L+ LE L + Q+ G+ Sbjct: 614 GYPAYKADLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ 673 Query: 502 VMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLL--VPPQLRPLLARYARLFAPGLH 559 + S ++L+ ++ + G P ++ VP LR LA + + G + Sbjct: 674 RLRLSPTESQSLLDAINVAY----QKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRN 729 Query: 560 --VLSYNEVPDELELKIMGAL 578 VLS E+ + + +I+G++ Sbjct: 730 IVVLSTAEIDYQSKFEILGSI 750 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 211/574 (36%), Positives = 319/574 (55%), Gaps = 18/574 (3%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+N +A+ RR DVA+EA Sbjct: 128 LVIINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVAAEA 187 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 DFYGAMDGASKFV+GDA+AG++IL IN++GG+ IG ++ L A + YVL++IGDGLV Sbjct: 188 DFYGAMDGASKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGDGLV 247 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 AQIPSLLLS A AIIVTRVS D++ + Q+ + + A +M +L + PGMP+L Sbjct: 248 AQIPSLLLSIATAIIVTRVSSTTDMSVLIGKQMGIGRAWVPVAA-VMLILGLTPGMPNLL 306 Query: 190 FLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSE---QQVSWETIPLIEPISL 246 FLL W + A + + + + ++ E + PISL Sbjct: 307 FLLGGVAAAAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAPISL 366 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ L G L RI +R+ +S G ++P +RIR++ L P+QY I + Sbjct: 367 QIGYGLIPLAGD-NGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRVGQA 425 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 E + D+ +ALP + +++G+ DP++G+ +WI Q A+A + V++ Sbjct: 426 ILAEDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVVEPE 485 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK-VYRALL 425 SVIATH+++I+ + L DD+ L + L TAP L + + L +L V +ALL Sbjct: 486 SVIATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLKALL 545 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITH---PFVRKQELTVYTLN 482 + + + D+ I L + + + +A +R AL + P Q L + TL Sbjct: 546 ADRIPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPI--SQPLPLITLE 603 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +LE LL + +QG +++L VD + + + + E GK ++V Sbjct: 604 PDLEQLL---LRSRRQGDEMLL----VDNGLAQSLLTALSERLETASGQGKQAAVIVAQP 656 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 LR A + R P V+ E+P+ ++++G Sbjct: 657 LRRAFAAFVRPHLPDAVVIGMGELPEARRVEVLG 690 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 195/590 (33%), Positives = 297/590 (50%), Gaps = 32/590 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ +NFIV++KG+ER++EV+ARFTLDAMPGKQM+IDADL AG I+Q Q + +R+D+ Sbjct: 119 FIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRRDLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIA ++I +N++GG+ IG+ + +SA A Q+Y L+TIGD Sbjct: 179 RESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAH---DVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV IP++L+ST A IIVTRV+ + H D+ +QL A P + A G++ VL +VP Sbjct: 239 GLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLGLVP 298 Query: 184 GMPHLPFLLFSALLGFTGWRM-SKQPLAAEAEEKSLETLTRTITETSEQQVSWET----- 237 G+P +PF L G W M KQ A EAE+ T T + + E Sbjct: 299 GLPKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALNPDS 358 Query: 238 ---IPLIEPISLSLGYKLVALVDKAQ--GNPLTQRIRGVRQVISDGNGVLLPEIRIRENF 292 IP++ PI L + LV VD Q G L + I +R + GV P +R R N Sbjct: 359 ELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRARGNG 418 Query: 293 RLKPSQYAIFINGIKADEADIPADKLMALPSSETYG--EIDGVQGNDPAYGMPVTWIQAA 350 L P Y I IN + ++ + + I G + +PA P W+ Sbjct: 419 SLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWVPEQ 478 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LS 409 + G D I H ++R + + + +L P + ++ + Sbjct: 479 YRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKEVVP 538 Query: 410 AALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP 469 +N +L + + L+ E +S+RD+ I L V D+++L VR A RR I+H Sbjct: 539 KVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYISHK 598 Query: 470 FVRKQ-ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQM 528 + R L VY L+ +E+ + V + G + L +P + + + + Sbjct: 599 YARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLAL-----EPELAQEIVQAVRSECGHL 653 Query: 529 KAAGKDPVLLVPPQLRPLLARYARL-----FAPGLHVLSYNEVPDELELK 573 + + PV+L +R RY R F P VLSY E+ EL ++ Sbjct: 654 PPSAQRPVILTAMDIR----RYVRKLLEYEFNPSFSVLSYQELSPELNIQ 699 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 189/581 (32%), Positives = 311/581 (53%), Gaps = 18/581 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + V+TKGA RI+EV+ARFTLD K M+IDA+ NAG+I + +A+ R++ + Sbjct: 122 FIILIAVQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGASKFV G+ G+ I +N+I G+ +G+ AA Q Y +TIGD Sbjct: 182 READFFGAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL+AQ+PSLLLS A IVTR SD G +V+ Q S V + +G + V+AV+PG P Sbjct: 242 GLLAQLPSLLLSVATGFIVTRSSDQGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQP-LAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 H + F G ++ K+ + + E + + + +T + I ++P+S Sbjct: 302 HSILFFMAVCFAFVGLQLRKRERVHVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLS 361 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L LGY L+ LVDK +G L RI +R+ + G++ P+IRI +N RL PS Y I G Sbjct: 362 LELGYGLIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQG 421 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 ++ + +A+ S + E+ G + DP +G+P WI + +A +GY V+ Sbjct: 422 LEVARGKLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAP 481 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 +++IATH+ +++R+ D+ ++ + + L P + +D++ ++ KV + LL Sbjct: 482 SAIIATHLTQVIRTNAADILGRQNVQMIIDALRKEYPAVVDDVTQKCPLGKIQKVLQGLL 541 Query: 426 TEGVSLRDIVTIATVL--VASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 E VS+R+ V I L AS++ T +L VR L R I + +Q L V L+ Sbjct: 542 REQVSIRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLD 601 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQM---KAAGKDPVLLV 539 + LE L+ + + +DS+ + L++ + + V+ + G PVLL Sbjct: 602 SSLETFLSEKI-------ALTVDSLSILTLSLDEQRQVLQAVRTVFVPTRQEGYIPVLLT 654 Query: 540 PPQLRPLLARYARLFAPGLH--VLSYNEVPDELELKIMGAL 578 +R A + F+ + V+SY EV ++ ++ +G + Sbjct: 655 TDTIRS--AMWNLFFSDRIEIAVMSYKEVSTDMRIETVGVV 693 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 196/577 (33%), Positives = 318/577 (55%), Gaps = 20/577 (3%) Query: 10 LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEA 69 L+ +NF+V+TKGA RI+EV ARFTLDA+PGKQMAIDADL++GLI++ +AQ RR+++ E+ Sbjct: 158 LIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELEEES 217 Query: 70 DFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLV 129 F+G+MDGASKFVRGDAIAG++I A+N+ GG+ IG ++ + A + +++GDGLV Sbjct: 218 SFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLV 277 Query: 130 AQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLP 189 QIP+L++S AA ++V++ G + QL A P L A ++F+L V+PG+P P Sbjct: 278 TQIPALIVSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFP 337 Query: 190 FLLFSALLGFTG----WRMSKQPL--AAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 F L + F G R ++Q AAEA +K E + E + + S ET Sbjct: 338 FFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQ---ERNSVKASLET----NQ 390 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 I L LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Y I I Sbjct: 391 IELCLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKI 449 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 +G ++ +++ + + G + +PA+GM + A GY + Sbjct: 450 HGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTV 509 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLS-AALNYSQLLKVYR 422 D+ SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS L V + Sbjct: 510 DNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLK 569 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLN 482 LL E +S+R++ I + + + + ++ VR+ + + I L V L Sbjct: 570 LLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVLNVLRLG 629 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 N + + + + +G V D +DP +L QF + + G+ VL+ P+ Sbjct: 630 NRWDLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPE 686 Query: 543 LRPLLAR-YARLFAPGLHVLSYNEVPDELELKIMGAL 578 RP + RLFA L VLS+ E+ +E+K +GA+ Sbjct: 687 ARPYIRMIIERLFAT-LPVLSHVEIARGVEVKSLGAI 722 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 198/570 (34%), Positives = 316/570 (55%), Gaps = 20/570 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKG+ RI+EV+ARFTLD+MPGKQMAIDADL+ GLI+Q +A+ RRK++ E+ F+G Sbjct: 142 NFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAKIRRKELEQESTFFG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIAG++I AIN+IGG+ IG+ ++ + A Y +MTIGDGLV+QIP Sbjct: 202 AMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQIP 261 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++S AA ++V++ G + QL +P L + ++A++PGMP PF Sbjct: 262 ALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAM 321 Query: 194 SALLGFTGWRM---SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGY 250 + G ++ +K+P A + + LE +E E+ +S I+ + + LGY Sbjct: 322 ALAAGALAYKRVQDAKKPKALDPAD--LEAAAP--SEPEEEPISASLA--IDDVKIELGY 375 Query: 251 KLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADE 310 L+ L++ G LT +IR +R+ ++ G ++P +RI +N RL YAI I ++A Sbjct: 376 GLLTLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGA 435 Query: 311 ADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 ++ LM + E+ G +PA+G+P TWI + +A GY V+D A+V+ Sbjct: 436 GEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLT 495 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGV 429 TH+ +I++ + DL +Y ++ +L L T +L +DL + + + +V ++LL E V Sbjct: 496 THLTEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVLQSLLRERV 555 Query: 430 SLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE---LTVYTLNNELE 486 S+RD+ I + ++ T L VR L R + + + + L + TL+ + E Sbjct: 556 SIRDLPQILEGVGEAAPHTASVTQLVEQVRARLARQLC--WANRGDDGALPIITLSADWE 613 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 + ++ L P+ L F + E+ AG+ PVLL P +RP Sbjct: 614 QAFAEALIGPGDDKQLAL-----PPSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRPY 668 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMG 576 + F V+S NE+ LK +G Sbjct: 669 VRSIIERFRGQTVVMSQNEIHPRARLKTVG 698 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 254/433 (58%), Gaps = 21/433 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA R++EV ARF LD MPGKQ+AIDAD++AG I+ A+A+ RR+ +E F+G Sbjct: 132 NFIVITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 ++DGASKFV+GDA+AG++I A+NLI G+ IG+ +++ AF+ Y ++T+GDGLV QIP Sbjct: 192 SLDGASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIP 251 Query: 134 SLLLSTAAAIIVTR--VSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 ++++S AAA+++ + + DIA + Q P+ L T +MF+ A++PG+P +PF Sbjct: 252 AVIISIAAALLLAKGGSDEKADIA--ISAQFGRHPAALATVGFMMFLFALIPGLPFIPFT 309 Query: 192 LFSALLGFTG-WRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGY 250 L + +LG + K P + E E+K R ++ + I ++ I ++ Sbjct: 310 LGAMVLGGAALYLYRKTPDSPEGEDKPAAQTDRP------REATMGDILDVDEIHVTFST 363 Query: 251 KLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADE 310 LV+ + A G L RI+ +R I+ GV+LPEIR+ ++ L + YAIF++G++ Sbjct: 364 DLVSSILDAAGG-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEAR 422 Query: 311 ADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + D+++ L E + E +P YG P WI+ +++ + +G + S V+A Sbjct: 423 GQLYPDRILLLLPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLA 482 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPR--------LAEDL-SAALNYSQLLKVY 421 TH+ ++V+ + L + +L L++TA L E+L + L+ + Sbjct: 483 THLLEVVKGNLARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAIL 542 Query: 422 RALLTEGVSLRDI 434 R LL E VS+R++ Sbjct: 543 RLLLEERVSIRNL 555 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 176/593 (29%), Positives = 308/593 (51%), Gaps = 44/593 (7%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + F+V+TKG+ER++EV+ARF+LD MPGKQM+IDADL +G+I + Q RRK++ E+ Y Sbjct: 124 VQFLVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELGQESQLY 183 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ + LS A Y L+TIGDGLVAQI Sbjct: 184 GSFDGAMKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGDGLVAQI 243 Query: 133 PSLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 P+LL+S +A IVTRV +N ++ + + N+LLA L + F + +PG P FL Sbjct: 244 PALLISISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGFPTPVFL 303 Query: 192 LFSALLGF----TGWRMSKQPLAAEAEEKSLET---------LTRTITETSEQQVSWETI 238 + S +LG W+ SK+ E E+ + ++ + ++V + Sbjct: 304 ILSVMLGVYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEEV--DNS 361 Query: 239 PLIEPISLSLGYKLVALVD-KAQGNPLTQRI---RGVRQVISDGNGVLLPEIRIRENFRL 294 L E I+LS L ++ + P +I + +++ G+LLP+I I + ++ Sbjct: 362 LLTENITLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHYSDKI 421 Query: 295 KPSQYAIFINGIKADEADIPA---------DKLMALPSSETYGEIDGVQGNDPAYGMPVT 345 + I IN +KA E + P D+L++L + E D N Y Sbjct: 422 DDDKIIILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDD----NKTHY----- 472 Query: 346 WIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLA 405 WI+ ++K +GY+ S S + ++ I + + + ++L +AP L Sbjct: 473 WIERDDESKLAPLGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELL 532 Query: 406 EDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 ++ ++ ++ V + L+ E + +R+I TI LV + KD +LL +R L R Sbjct: 533 KECYRQVSIQRINDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARY 592 Query: 466 ITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVK 525 I++ F + L+N++E ++ + + Q+ G + L +P L+ + V Sbjct: 593 ISYFFSTDGKFNAIILSNDMEEIIRSGIRQSSSGTLLNL-----EPAELDMIIEKISMVI 647 Query: 526 EQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + +K +D + L +R + + P + VLSY+E+ ++E+ ++ ++ Sbjct: 648 DDIKYI-QDYIFLTSIDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 183/577 (31%), Positives = 293/577 (50%), Gaps = 26/577 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ + F+VVT GA+R++EV+ARFTLD+MPGKQM+IDADLN G+I++ QAQ RR + Sbjct: 117 FFILVVVQFLVVTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIE 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA+KFV+GDAIA ++I+ IN+IGG+ IG+ + L A Y L T+GD Sbjct: 177 KEANFYGAMDGATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIPSL+++ II+TR + G++A + Q++ P L ++ A +PG+P Sbjct: 237 GIVTQIPSLIIAVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLP 296 Query: 187 HLPFLLFS---ALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 L +L AL G+ + KQ E + E +T T+ S QV++ + I P Sbjct: 297 SLTLILVGITFALFGYFAHK-KKQLKLIEKTFREFENTKKTSTQESLLQVAFSS--QIWP 353 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 L A+ + ++ + G+ LPE+ ++ LK +Y+I + Sbjct: 354 QIL------------AEETEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRL 401 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + I+ + DK+M + + G+ +PAYG+ W+ A + G V+ Sbjct: 402 SNIEFASGVLHPDKMMVIDPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVV 461 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRL-AEDLSAALNYSQLLKVYR 422 + SV+ TH+ + V+S+ + + QL L +E + L + + +++ Sbjct: 462 EPISVLMTHITEFVKSHSAEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFT 521 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTL 481 L+ E V L + I VL + KD LL VR LR +T + + L + ++ Sbjct: 522 HLVQEKVCLHNANHIFEVLADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISI 581 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 LE L N V+ + + P L+ E+ + G +PVLLV P Sbjct: 582 APLLERALLN------GAANVITKGLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNP 635 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R L + P LHV+S NEVP ++L +G + Sbjct: 636 TIRRPLWQLLNRTVPLLHVISVNEVPHHIKLNSLGVI 672 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 261 bits (666), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 180/575 (31%), Positives = 301/575 (52%), Gaps = 18/575 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + T+L I +V GA R +EV+ARFTLD++PGKQM+IDADLN +I + AQ +RK + Sbjct: 117 IFTVLIIFQFIVANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLN 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +FYGAMDGA KF++GD I G++IL +N+I G+ +G+ + +S A Y +T+GD Sbjct: 177 METEFYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V QI SL+L+ + IIVTRV D + + +LLA V+Y G+ + + Sbjct: 237 GIVNQIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTP 296 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAE---EKSLETLTRTITETSEQQVSWETIPLI 241 +P LPF L + F G R +K+ + E E +K +E + + + + S+ Sbjct: 297 LPFLPFALVGGTIIFLGIR-NKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDK 355 Query: 242 EPISLSLGYKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQY 299 PI + LG L ALV K G ++ +R+ I G+ +P I ++N +P +Y Sbjct: 356 YPIIVELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRY 415 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 I I G KA E + + L+AL + ++D DP +G WI A G Sbjct: 416 IIRIKGAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKG 475 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLL 418 YQV++ S++ TH++ +VR + +L + L N L + L E++ ++ S + Sbjct: 476 YQVLEPLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQ 535 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHI-LLAADVRLALRRSITHPFVRKQELT 477 V + LL EG+S+RD+ TI ++ + ++H+ + + VR + + I + + Sbjct: 536 NVIKQLLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICEN-AKNPDGK 594 Query: 478 VY-TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 +Y L ++ L +VVN + QG + D + ++ ++ Q Q +V +Q + G++PV Sbjct: 595 IYAALFSDSIELDADVVNNSYQGYLLNWD-LDLETRVVEQVQ----RVFKQARLMGREPV 649 Query: 537 LLVPPQ-LRPLLARYARLFAPGLHVLSYNEVPDEL 570 LL + R + R + VL +E+ E+ Sbjct: 650 LLTRRKDFRFAIVRLLERYQVEAQVLCISELAPEI 684 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 173/597 (28%), Positives = 310/597 (51%), Gaps = 44/597 (7%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKG+ER++EVSARF+LDAMPGKQM+ID D+ AG+I+ +A+ RR + Sbjct: 121 FLIITIVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G+MDGA KFV+GDAIAG++I+ +N++GGV IG+ + L+A A Q Y ++T+GD Sbjct: 181 KESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V+Q+P+LL++ A IIVTRVS D+ D+ D+ Q++A P + ++ + ++PG Sbjct: 241 GMVSQVPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETL---------TRTITETS------ 229 P + FL+ + L+G G+ +S++ + + L++L RT +TS Sbjct: 301 FPTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGR 360 Query: 230 --EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIR 287 EQ+ T+PL+ + S L A+ L + VR+ + GV P I Sbjct: 361 LGEQEAFAMTVPLLIDVDSSQQEALEAI-------ALNDELVRVRRALYLDLGVPFPGIH 413 Query: 288 IRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMP---V 344 +R N + +Y I + + ++ A L+ S E+ G+ + +P Sbjct: 414 LRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQL-ELLGIPYEKGEHLLPDQET 472 Query: 345 TWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRL 404 W+ + + + + V+ H++ ++R Y D + L ++ L Sbjct: 473 FWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGEL 532 Query: 405 AEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRR 464 +++ + ++ ++ + L+ E +S+R++ +I +V KD + L +R +L+R Sbjct: 533 IKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKR 592 Query: 465 SITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQ 523 I + + L Y + E+E + + V Q G + LD V ++L Q + T+ Sbjct: 593 YICYKYANGNNILPAYLFDQEVEEKIRSAVRQTSAGSYLALDP-AVTESLLEQVRKTIGD 651 Query: 524 VKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP----GLHVLSYNEVPDELELKIMG 576 + Q+++ PVL+V +R RY R GL VLSY E+ ++ ++ +G Sbjct: 652 LS-QIQS---KPVLIVSMDIR----RYVRKLIESEYYGLPVLSYQELTQQINIQPLG 700 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 190/587 (32%), Positives = 291/587 (49%), Gaps = 30/587 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L +NF+V+TKG+ER++EV+ARFTLDAMPGKQM+ID+DL AGLI QA+ RR+++A Sbjct: 124 FLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLA 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I+ IN+IGG IG+ + + A AA Y ++TIGD Sbjct: 184 KESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-----DIAHDVRNQLLASPSVLYTATGIMFVLAV 181 GL+AQIP+LL+S A +I+TRVS +G +I ++ QL + P + M A+ Sbjct: 244 GLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFAL 303 Query: 182 VPGMPHLPFLLFSAL-LG---FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWET 237 +PGMP F++ SA+ LG F WR+ +Q +A+E + L + + ++ Sbjct: 304 LPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQL-------APEDNGYQD 356 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 + P L ++ L Q IR +R + G LP I + L Sbjct: 357 LRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAAD 416 Query: 298 QYAIFINGIKADEADIPADKLMALPSS-ETY---GEIDGVQGNDPAYGMPVTWIQAAQKA 353 ++ + I A ++L SS E + GE DG A W + Sbjct: 417 EFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQH 476 Query: 354 KALNM-GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL 412 L + ++ +I + + + + + N L S P LA++L + Sbjct: 477 PLLQQEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIM 536 Query: 413 NYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR 472 S+ V + L +E + LR + TIA L+ +D L VR+AL+ I H + + Sbjct: 537 PLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQ 596 Query: 473 KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 L V+ L E E LL + + QAQ L + N+LNQ +S P Sbjct: 597 PNGLNVWLLTPETEELLRDSLRQAQSETFFSL-AQEYGINLLNQMRSAFPPYD------N 649 Query: 533 KDPVLLVPPQLR-PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++LV LR PL A F + VLS+ E+ + + ++G L Sbjct: 650 HHALILVAQDLRSPLRALLKDEFH-AVPVLSFAELTSNVAINVLGRL 695 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 187/590 (31%), Positives = 296/590 (50%), Gaps = 43/590 (7%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + FIV+TKGAER++EV+ARF+LDAMPGKQM+IDAD AG+I+ + RR + E+ Y Sbjct: 129 VQFIVITKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALERESQLY 188 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+ DGA KF++GDAIAG++I+ IN+IGG+ IG+ K +LS + Y ++++GD LV QI Sbjct: 189 GSFDGAMKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGDALVGQI 248 Query: 133 PSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 P+LL+S A +VTR+S + ++ HD+ ++LL+S VL ++G+ ++ ++PG P FL Sbjct: 249 PALLISMGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGFPLPVFL 308 Query: 192 LFSALLGFTGWRMSKQPLAAEAEEK-------SLETL-TRTITETSEQQVSWETIPLIEP 243 SA LGF W + +A AE + +L+ L T ++ Q +T L P Sbjct: 309 TVSASLGFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDTAFLGHP 368 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRI------------REN 291 + + L + + N T + + D G+LLP I + +++ Sbjct: 369 LVVILPHACAHTPSLSPQNLATS----LHARVFDEVGLLLPTIVVGFAAADAIVSDAQDD 424 Query: 292 FRLKPSQYAIFINGIKADEADIPADKLMALPSSE-TYGEIDGVQGNDPAYGMPVTWIQAA 350 R + I IN + A I D + + S+ G V G P W+ A Sbjct: 425 AR---QRVVIRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWVM-A 480 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA 410 Q A+ ++G + + ++ + F + L + L S P L +++ Sbjct: 481 QPAQLQDIGIAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKEVYR 540 Query: 411 ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF 470 + +L ++ R LLTE V++R++ I L T KD I+L VR+AL R I+H Sbjct: 541 QIPVQKLCEILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYISHRI 600 Query: 471 VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 R + V L E E + + G + L P + N+ + Q+ A Sbjct: 601 ARNGHMKVIVLTPEFEEKVRQGIKHTSTGTFLNL-----TPTVANELVDRITVALNQLHA 655 Query: 531 AGKDPVLLVPPQLRPLLARYARLFA----PGLHVLSYNEVPDELELKIMG 576 +D VLL +R RYAR PGL V+S+ EV D +EL ++G Sbjct: 656 VRRDFVLLASMDVR----RYARTLIESRFPGLQVISFGEVSDNVELDVIG 701 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 174/556 (31%), Positives = 289/556 (51%), Gaps = 37/556 (6%) Query: 15 FIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGA 74 F+V+TKGA R+SEV+ARF LD+MP K MA++++L AG I +A+ +RK + E+DFYG Sbjct: 136 FVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRKKIRGESDFYGT 195 Query: 75 MDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPS 134 MDGASKFV+GD IAG++I IN++GG+ IG+ A Y T+GDGLV+QIPS Sbjct: 196 MDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFTVGDGLVSQIPS 255 Query: 135 LLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 +S A ++VTR S +++ + Q+ A P L+ G F L ++PG P + + + Sbjct: 256 FFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLPGFPKIALFIIA 315 Query: 195 ALLGFTGWRMSKQPLAAEAEEKSL-ETLTRTITETSEQQVSWETIPL--IEPISLSLGYK 251 L G+ + K E +E L E T+T Q + P +E I LS+G Sbjct: 316 LALFLAGYALKK-----EQQELGLNEDGTKTDAGEQVHQGPLDVTPFLKVEKIELSVGAS 370 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 L+ L +++G L RI +R+ ++ G+++P +RI +N ++P +Y + ING + + Sbjct: 371 LIPLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSINGTEMAKG 430 Query: 312 DIPADKLMALPSSETYG-EIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + + L+AL ++ G D + +PA+G+P WI+ +K A G+ + SVIA Sbjct: 431 FVRPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQPTSVIA 490 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-------LNYSQLLKVYRA 423 TH ++ ++ L +++ + + + L ++ AA L Y Q KV + Sbjct: 491 THFSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQ--KVLQN 548 Query: 424 LLTEGVSLRDIVTI------ATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQEL 476 LL E V +R+ V I A ++ S T+ VR L I+ + + + Sbjct: 549 LLQEEVPIRNSVAILEGVADAIAIMGSEQATE-------LVRSRLASQISQMVADQDRNI 601 Query: 477 TVYTLNNELE-NLLTNVVNQAQ-QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 V TL+ +L+ N+ N+ N QG +++ S N++ + + V + + D Sbjct: 602 RVITLSQQLQNNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSD---SGVDD 658 Query: 535 PVLLVPPQLRPLLARY 550 V L P +R L ++ Sbjct: 659 IVFLTSPIIRRPLYQF 674 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 191/579 (32%), Positives = 300/579 (51%), Gaps = 26/579 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 +LTL + +VVTKGAER++EVSARFTLDAMPGKQM+IDADL AG I+QAQA+ RR+D+ Sbjct: 122 ILTL--VQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAIDQAQARRRRRDLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GD IAG++I+A+NL+GG IG+ + + A + L+ IGD Sbjct: 180 RESQMFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLAEAASTFALIAIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD---IAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+Q+PSL ++ AA ++VTRV+ + + ++ Q L+ G+ LA++P Sbjct: 240 GLVSQVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLWVVAGLCVALALMP 299 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL-IE 242 GMPH+ FLL + LG G +S+ + + EEK+ + P+ + Sbjct: 300 GMPHVTFLLLAGGLGGLGHVLSRAGV-PKVEEKAGAPADGVAPGAAGAPPESAASPVGVS 358 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR-ENFRLKPSQYAI 301 P++L + L L + + + + GVR + GV +P IR+R + L P +Y + Sbjct: 359 PLTLDMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRTQAAYLGPGEYRV 418 Query: 302 FINGIKADEADIPADKLMAL--PSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 ++ + A + L AL P + ++ +P+ G ++ I + + Sbjct: 419 LVDEVPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRIPESARVLLETAQ 478 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 + +++ HV I+R DL D+ L L + AP L ++ + L Sbjct: 479 VPLRRPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKEALQKVPLPLLTD 538 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVY 479 V R LL EGVS+RD+ I LV S T D + LA R ALRR ++H F L Y Sbjct: 539 VLRKLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLSHKFAPTGPLYAY 597 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 ++ E+E +L + + + DP + + + QV + +A VLL Sbjct: 598 LVDPEVEEVLRGMGPR----------GLAPDPERVAEILEGVRQVATEGRA-----VLLT 642 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P +R L R P + VL+Y E+ L+++ +G L Sbjct: 643 APDVRRPLRRLCEGAFPDVAVLTYGELDGALQIRPIGRL 681 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 175/571 (30%), Positives = 295/571 (51%), Gaps = 33/571 (5%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + FIV+TKG+ER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ +R V E+ Y Sbjct: 126 VQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY 185 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 GAMDGA KFV+GDAIA ++++ N+IGG+ +G+ ++N+SA A Y ++++GDGL+AQI Sbjct: 186 GAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI 245 Query: 133 PSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPF 190 PSLL+S A +IVTRV ++A+++ Q+ P+ L A +MF+ A++PG P L F Sbjct: 246 PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF 305 Query: 191 -LLFSALLGFTGWRMSKQPLA-AEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSL 248 L S +LG + W +Q A A+ EE ++ T + P P+ L L Sbjct: 306 GTLGSVVLGASLWLKRQQKRASAQGEESHFTDAGKSDTANVDNMA-----PGAVPLILYL 360 Query: 249 GYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIR--IRENFRLKPSQYAIFINGI 306 G + + + + ++ +R + GV LPEI+ I + L ++ + Sbjct: 361 GADVPI-------HGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESV 413 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + +P + L+ + ++ + P + WI+ +A G V Sbjct: 414 LQLQL-VPQEALLIDSIATIPCRVESI----PFSNQRLHWIKGNALEQAEAQGLAVCRDE 468 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 + A + K++ Y + + L + + + L ++L L+ ++ ++ + L+ Sbjct: 469 QIPAYVMGKVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVE 528 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNEL 485 EG+S+RD+ TI LV KD I+L VR+ALRR I F Q + V + + Sbjct: 529 EGISVRDLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGI 588 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 EN++ + Q+ G LD + Q Q + ++EQ+ + VLL +R Sbjct: 589 ENVIRESIRQSTAGSYSALD--------MAQTQQILTCIQEQLPPE-QTCVLLTSLDVRR 639 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMG 576 L + VLS+ E+ D+ E+K++G Sbjct: 640 YLRKIVERELFSTPVLSFQELGDDAEIKVIG 670 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 174/571 (30%), Positives = 301/571 (52%), Gaps = 27/571 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + LL + ++V+T G +RISEV+ARFTLDAMPG+QMAIDADL+AG I +A+ +R + Sbjct: 108 FVVLLIVQYMVITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLR 167 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+DF+GAMDGAS+FVRG+ +A + +N +GG+ +G+ K + DA Y+ + IG Sbjct: 168 KESDFFGAMDGASRFVRGETMASALAAVVNALGGMVVGLLKGEAAVDALL-HYLGVAIGV 226 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 L I SL LS +AA++V RVS + ++ ++L+A P ++ ++ V +++PG+P Sbjct: 227 ALQIAISSLALSLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVP 286 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L + LL + G + +P A A + +E R + SE + + ++ + L Sbjct: 287 KLLLIPLGVLLIWFG--RTPKPAAETALPEQVEA-KRLYEQLSEPEAMLGFVG-VDAVEL 342 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L D G + I +R+ +S+ G +P IRI +N LKP+QY I + G+ Sbjct: 343 EFGYELLPLFDTTSGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGV 402 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 A E + L+A+ ++ GV +P + + WI + K KA G V+D Sbjct: 403 TAGEGILEMGLLLAMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCG 462 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +++ TH+ ++++S + DL +I + + + + P + E+L + + V+R LL Sbjct: 463 TIVITHLGEVLKSSLADLITRQNIKDIVDYVGRSHPAVVEELQQVASLGDVEFVFRYLLQ 522 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLA--LRRSITHPFV------RKQELTV 478 E + +RD+V + ++ D + + D+R A L R P++ + + V Sbjct: 523 ERLPVRDVVRVFELIT-------DSLRASRDLREAGELARKACVPYLLETLAEEEGTIKV 575 Query: 479 YTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLL 538 TL ++E L + Q G ++ + L + + + E + ++ VL+ Sbjct: 576 ITLKPDMERAL---IESYQPGSEI---GFALSGENLRKIIDEIKKAWEMSHSYAENAVLV 629 Query: 539 VPPQL-RPLLARYARLFAPGLHVLSYNEVPD 568 V P++ R L +R L VLSYNE+ D Sbjct: 630 VHPRIRRALWELLSRQGLKELTVLSYNEIMD 660 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 175/580 (30%), Positives = 298/580 (51%), Gaps = 36/580 (6%) Query: 7 LLTLLTI-NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDV 65 + T++TI F+V+TKGAER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ R V Sbjct: 119 IFTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRV 178 Query: 66 ASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIG 125 E+ FYG+MDGA KFV+GDAIAG++I+ +NL GGV IG++++++ AA + ++++G Sbjct: 179 QKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVG 238 Query: 126 DGLVAQIPSLLLSTAAAIIVTRV----SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAV 181 D LVAQIP+L++S A ++VTRV ++A D+ Q+ + + +M V+A+ Sbjct: 239 DALVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAI 298 Query: 182 VPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLI 241 +PG P L FL + L W++ K+ K ++ Q +S P Sbjct: 299 IPGFPALVFLFLAVCLLGIAWKLQKKRTFGTGNNKD----AMGADLSNSQNIS----PGA 350 Query: 242 EPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAI 301 EP+ L+L + + + +TQ+I +R + +G+ LP+I + +K + AI Sbjct: 351 EPLILNLSSNIYS-------SDITQQIEVMRWNFFEESGIPLPKIIVNP---VKNNDSAI 400 Query: 302 -FINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 F+ ++ D D + + + VQ + + Q+ L G Sbjct: 401 EFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLT-GM 459 Query: 361 QVIDSAS-VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 V + + I + K+V S + + L + + L ++L L S+++ Sbjct: 460 DVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVD 519 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTV 478 + + L+ E VS+RD+ TI L+ ST KD ++L VR+ALRR I + V L V Sbjct: 520 ILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNV 579 Query: 479 YTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLL 538 + + +++EN L + Q G + + P Q + +K M G + V+L Sbjct: 580 WLIGSDIENELRESIRQTSSG-----SYLNISPERTEQI---IGFLKNIMNPTG-NGVIL 630 Query: 539 VPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + P + VLS+ EV + +ELK++G + Sbjct: 631 TALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTV 670 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 177/584 (30%), Positives = 289/584 (49%), Gaps = 31/584 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EVSARFTLDA+PGKQMAIDA+L I+Q +A+ RR + Sbjct: 121 FLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQMAIDAELRNNHIDQHEARRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++++ IN++GG+ IG+ ++S DAA Y L+TIGD Sbjct: 181 QESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGISIGLLSKDMSLDAAMHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG----DIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 L++QIP+LLLS AA IVTRV NG + D+ +QL AS L A ++ ++ V Sbjct: 241 ALISQIPALLLSITAATIVTRV--NGPSKLKLGADIVSQLTASTQALRLAACVLLLMGFV 298 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PG P PF++ + L + + A+ +E + +T + Sbjct: 299 PGFPLPPFVILAVLFAAASY----VKVGAKGDEPAAKTGANVTASAPAPAQAQAQKQAAH 354 Query: 243 ----PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 PI+L L L +DK + L Q I V +S G+ +P I R + L SQ Sbjct: 355 AEALPIALFLAPNLTHSIDK---DELEQSIARVSTSVSADLGITVPRIPARIDQNLSKSQ 411 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKA--KA 355 + I ++ + E D+ + L E+ G+ DP WI+ A KA Sbjct: 412 FRIDVDSVPV-ERDVINPTQLVLNDDIANIELSGIPFRQDPETAR--VWIEERHAAALKA 468 Query: 356 LNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYS 415 +G+ ++A ++ + Y L + QL R+ L +++ Sbjct: 469 AGIGHH--RPVEILALRLHSTLTRYAQRLVGIQETRQLLARMEQEYADLVKEVLRTATIP 526 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE 475 ++ +V R LL EG+ +R+ + L S ++ +LL VR AL+R I + Sbjct: 527 RIAEVLRRLLDEGIPIRNTRLLLEALAEWSEREQNAVLLTEYVRAALKRQICFRYANAHR 586 Query: 476 LT-VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 + + + E E ++ V + G ++LD + +L+QF+ Q+ + + Sbjct: 587 VVAAFIIERETEEIVRVSVRETAVGPYLVLDDWQSE-KLLSQFR----QIHSTIAQSQSQ 641 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 PV+L +R + + L VLSY ++ E ++ +G++ Sbjct: 642 PVILGSMDIRRFVRGFLTRNGLDLPVLSYQDLASEFTVQPIGSV 685 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 171/575 (29%), Positives = 283/575 (49%), Gaps = 25/575 (4%) Query: 17 VVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMD 76 VVTKGAER++EV+ARF LDAMPGKQMAIDADL AG+I+ QA+ +R + E++ YGAMD Sbjct: 140 VVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMD 199 Query: 77 GASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLL 136 GA KF++GD IAG++I IN++GG+ IG+ + + A Y L++IGDGLV+QIPSLL Sbjct: 200 GAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLL 259 Query: 137 LSTAAAIIVTRVSD--NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 +S A I+ TRVS N ++ ++ +QL+ P L A+ + G P F + S Sbjct: 260 ISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILS 319 Query: 195 ALLGFTGWRM--SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 + G G + K A + + T+ + + + L P+ L LG L Sbjct: 320 FIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDL 379 Query: 253 VALVD---KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR-ENFRLKPSQYAIFINGIKA 308 AL+ K+ + + I +RQ + G+ P I +R ++ L+ Y I +N + Sbjct: 380 SALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPY 439 Query: 309 DEADIPADKLMALPSSETYGEIDGVQGNDP------AYGMPVTWIQAAQKAKALNMGYQV 362 IP ++ E N P A G+P W+ K + Sbjct: 440 VRGKIPPHHVLTNEVEENLKRY-----NLPFITYKNAAGLPSAWVSEDAKTILEKAAIKY 494 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 VI H++ + ++ + + + P L ++++ + +L ++++ Sbjct: 495 WTPLEVIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFK 554 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 L+ E +S++D+ TI L + KD +LL VR +L+ I+ F + Q ++VY L Sbjct: 555 RLVQEQISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLL 614 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + E+E ++ + Q G + L DP+ +N +M G+ PVLL Sbjct: 615 DPEIEEMIRGAIKQTSAGSYLAL-----DPDSVNLILKSMRNTITPTPPGGQPPVLLTAI 669 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 +R + + P + V+SY E+ E+ ++ +G Sbjct: 670 DVRRYVRKLIETEFPDIAVISYQEILPEIRIQPLG 704 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 166/575 (28%), Positives = 281/575 (48%), Gaps = 23/575 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EV+ARFTLDA+PGKQMAIDA+L G I+ +++ RR + Sbjct: 121 FLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAG++++ IN++GG+ IG+ +S Y L+TIGD Sbjct: 181 KESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 L++QIP+LLLS AA +VTRV+ ++ D+ NQL AS L A ++ + VPG Sbjct: 241 ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P LP A + + L A+ + + T+T Q + P PI Sbjct: 301 FP-LPVFFMLAAVFAAASFVKGDVLDADKVDAT------TVTPAESQTPNVAAQP--NPI 351 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 + L L +D+ + L Q I + Q++S G+++P I + + +L SQ+ I + Sbjct: 352 GVFLAPSLTNAIDQVE---LRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRIDVE 408 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G+ E D+ ++L E G+ +DP W++ + + G + Sbjct: 409 GVPV-EQDLINPAQLSLADDLKKIESSGIPFRHDPETHR--IWVEQSHEPALKAAGIRHH 465 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 + ++A V+ + + P L + QL R+ L +++ ++ V R Sbjct: 466 SPSELLAMRVHATLTCHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRR 525 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNN 483 LL EG+ +R+ + L S ++ LL VR ++R I H + R L + + Sbjct: 526 LLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVRSGMKRQICHRYGRHGVLPAFVMER 585 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E+++ V + G + L+ S M QV P++L + Sbjct: 586 ETEDVVRCAVRETAAGPYLALED-----RQSEALLSQMRQVFSSTAPGQTRPIVLTSMDV 640 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + + L VLSY ++ + +++ +G++ Sbjct: 641 RRFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSI 675 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 169/574 (29%), Positives = 300/574 (52%), Gaps = 29/574 (5%) Query: 17 VVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMD 76 +V G+ R +EV+ARFTLDA+PGKQMAIDADLN LI + +A+ +R + E +FYGAMD Sbjct: 122 IVANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYGAMD 181 Query: 77 GASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLL 136 GA KFV+GD + +++ +N++ G+ +G+ + LS A +Y +TIGDG+V+QI SLL Sbjct: 182 GAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIGSLL 241 Query: 137 LSTAAAIIVTRVSDNGD--IAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 ++ +A +IVTRV D D +A + +L+ + V+YT + + ++ V +P +PF+ Sbjct: 242 MAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFVGIG 301 Query: 195 ALLGFTGWRM-----SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLG 249 +LG G+R K+ L E E + +++ T + +E ++ P+ + LG Sbjct: 302 VVLGIIGYRTQFNLKKKEQLELEKEMELIQSETN--SAEAEHNQAFGAAREKFPVVVELG 359 Query: 250 YKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQYAIFINGIK 307 + ALV K G ++ +R+ I G+ +P I ++N +P +Y I + G+ Sbjct: 360 LNIAALVKQKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGVA 419 Query: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 + A L+AL + ++D DP +G WI + A YQV++ S Sbjct: 420 VASGVLKAGHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPLS 479 Query: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLKVYRALLT 426 ++ TH++ ++R + +L I L + L+ L +++ ++YS + V R LL Sbjct: 480 ILITHLDVVLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLLK 539 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHI-LLAADVRLALRRSITHPFVRKQELTVYT--LNN 483 EG+S+RD+ TI ++ T+ + + + A VR + + I + Q+ +Y L + Sbjct: 540 EGISVRDLPTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQ-AKNQDGKIYALLLQD 598 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAA---GKDPVLLVP 540 +E + T +VN G + L++ + +V++ + A G++PV+L Sbjct: 599 SIE-MDTEIVNTPYYGYALNW--------ALDKELPIIQKVRDTVNKAQLTGREPVILTR 649 Query: 541 PQ-LRPLLARYARLFAPGLHVLSYNEVPDELELK 573 + R R + + VLS +E+ E E++ Sbjct: 650 RKDFRFGFVRVLERYQLDVPVLSISELSPETEVE 683 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 170/585 (29%), Positives = 296/585 (50%), Gaps = 47/585 (8%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + FIV+TKG+ER++EV+ARF+LD MPGKQM+IDADL AG+I+ A A+ RR + E+ Y Sbjct: 124 VQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILERESQLY 183 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ ++ +S A Y ++TIGDGLV+QI Sbjct: 184 GSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGDGLVSQI 243 Query: 133 PSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 P+LL+S +A IVTRV+ D+ ++ ++ +Q+ +P VL + + + ++PG P F Sbjct: 244 PALLISISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGFPFFVFF 303 Query: 192 LFSALLG--FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQ---------VSWETIPL 240 L + L F ++ ++ + + S T T I + + +S ET+PL Sbjct: 304 LIAVTLTALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAISSETVPL 363 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 I L+ +K N + I +R GV LP I R + LK Sbjct: 364 I----------LLFAENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIV 413 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPV----------TWIQAA 350 + IN ++AD +I DK+ ++ G+ID A G+PV +W+ + Sbjct: 414 LLINEVRADSFNIYFDKVCI---TDENGDID-------ALGIPVVSTSYNERVISWVDVS 463 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA 410 N+ ++ + +++ + + I ++F + + ++ + P L +++ Sbjct: 464 YTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFR 523 Query: 411 ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF 470 + ++ +V + LL E +S+R++ I L + KD I L VR +L R I Sbjct: 524 HVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVITLVEHVRASLSRYICSKI 583 Query: 471 VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 E+ V L+ +E+ + + Q G + +D D M T+ +++ Sbjct: 584 AVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDEVM-----ETLAHALRELRN 638 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIM 575 A K+ VLLV +R + R + V+SY E+ + + ++ Sbjct: 639 AKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINVL 683 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 176/592 (29%), Positives = 297/592 (50%), Gaps = 59/592 (9%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 +NF+V+TKG+ R++EVSARF LD++PGKQ+AID DLN+G I+ +A+ RR E F+ Sbjct: 130 VNFMVITKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQREISFF 189 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G++DGASKFV+GDAIAG++I INL G+ G+ + + A Y +TIGDGLV+QI Sbjct: 190 GSLDGASKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGDGLVSQI 249 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLY-TATGIMFVLAVVPGMPHLPFL 191 P+L+ S AAA++++R A + Q L++ V + A G++F+ +VPGMP L F Sbjct: 250 PALITSMAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFI-GLVPGMPTLVFF 308 Query: 192 LFSALLGFTGW----RMSKQ------PLAAEAEEKSLETLTRTITETSEQQVSWETIPLI 241 +A+LG W R K P+ + A S +T + +T E Sbjct: 309 GLAAVLGVAAWFIRARQDKTRPEDAAPVESHA-AASAQTRIGDVLDTDE----------- 356 Query: 242 EPISLSLGYKLV-ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 I + +G L+ + +D +G L QRI +R I+ G++LP++RI + + +Y Sbjct: 357 --ICVEIGAGLILSALDPVRG--LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYV 412 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 + + G+ + + ++AL + E+DG +P YG WI + +A G Sbjct: 413 VRLQGVVRGKGVLRPQGVLALGAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGA 472 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNY------ 414 V+ V++TH+ ++V++ +P L + ++ L S ++++ A LN Sbjct: 473 TVVTPMEVLSTHLMEVVKTNLPALLTMSSMQRMIRELCS----VSDEHRAQLNQRFFDSM 528 Query: 415 -------SQLLKVYRALLTEGVSLRDIVTIA-TVLVASSTVTKDHILLAADVRLALRRSI 466 LL V R LL E +S+R++V I V A + + + VR LR I Sbjct: 529 VPDKVPPEMLLAVLRGLLEERISVRNLVLITDAVHEARGGASPEAVY--EQVRKRLRGQI 586 Query: 467 THPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVP-VDPNMLNQFQSTMPQV 524 T F+ + L + L+ + E + ++ + G ++P + + + Q+T+ + Sbjct: 587 TEQFLDEDGYLELLQLHPQWEAEIARSEAESARAGN---GAIPQIQKRLADALQATLSGL 643 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 G + VL VP R L+ VL +E+ ++++ G Sbjct: 644 PP-----GIEVVLAVPDHRRRLVRMMLSSAGIATPVLGLDEIDPGAQVRLRG 690 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 152/474 (32%), Positives = 250/474 (52%), Gaps = 21/474 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL AG ++ +A+ RR +A Sbjct: 117 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAGHLSPEEARKRRALLA 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ IGI +N++A A ++ +++IGD Sbjct: 177 MESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD------NGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 +V+QIPSLL+S AA +++TRVSD + ++ QL S ++TA+ ++ A Sbjct: 237 AMVSQIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFA 296 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEE-KSLETLTRTITETSEQQVSWETIP 239 +VPG P F+ + L+ G+ + + + +E +L L R ++ ++ + Sbjct: 297 LVPGFPSFLFVALATLIFVFGYTLRNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPS 356 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 P+ + LG +L +D L + R +++ G+ P I I + L+P Y Sbjct: 357 FTVPVGVRLGAELAKGLDVPA---LDTAFQQGRHALAEALGLPFPGIAIWKADALQPDSY 413 Query: 300 AIFINGIKADEADIPADKLMA--LPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAK-- 354 + ++ I + +P L+ LP + ++ N PA WI A A+ Sbjct: 414 EVRVHDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAP----HWIAPAHVAQDA 469 Query: 355 ALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNY 414 AL+ Q ++ VIA HV ++R + + R+++ P L + A+ Sbjct: 470 ALSATGQRVE--RVIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEAQKAVPA 527 Query: 415 SQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITH 468 ++ V R LL E V +R++ I LV KD ++L VR L R I H Sbjct: 528 QRIADVLRRLLEEQVPIRNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAH 581 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/374 (35%), Positives = 217/374 (58%), Gaps = 7/374 (1%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 +NF+V+TKGA R++EV ARF LDAMPGKQ+AID+DL G I +A+ RR+ EA F Sbjct: 128 VNFMVITKGAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGFL 187 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G++DGASKFV+GDAIAG++I A+NLI G+ G+ + LS A Y ++T+GDGLV+QI Sbjct: 188 GSLDGASKFVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQI 247 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 P++++S AAA+++++ + G I + QL + + LY GI+ + A++PG+P LPF+ Sbjct: 248 PAVIVSVAAALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFIA 307 Query: 193 FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 +A + K A+EK+ T+ + ++I + I L + L Sbjct: 308 GAAGFAAVAYFTKKA-----ADEKAASEETKPEDAAPKAPKIGDSI-YADEIHLEVAPDL 361 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 V +V + N RI +R+ I++ G +LP IR+ +N LK ++Y + I G++ D Sbjct: 362 VNMVLVGE-NGFESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSGI 420 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 + +++AL + G + +P Y W+ +A+K + V++ V+ATH Sbjct: 421 LRPGQVLALIEENQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLATH 480 Query: 373 VNKIVRSYIPDLFN 386 + ++++S +F Sbjct: 481 MLEVIQSNFSLVFT 494 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 170/586 (29%), Positives = 283/586 (48%), Gaps = 36/586 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + +NF+V+TKG+ER++EV+ARF+LD MPGKQM+ID+DL AGLI QA A+ RR D+ Sbjct: 121 FLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQRRSDLE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+ DAIAG++I +NL+GG+ +G+ + +S A Y ++++GD Sbjct: 181 KESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYTILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS----DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 GLVA IPSL++S AA +IVTRV+ D + A D+ L + + L + F+ A V Sbjct: 241 GLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFCFLFAFV 300 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PGMP FL SA L GW + +AEE + T + S + + + I Sbjct: 301 PGMPSYVFLATSATL-LCGWYFISRK-TDKAEEVDVSTQFSDMLSASGKSIKMDDILHTN 358 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 + L +L ++ N + R R + G+L P + E S + Sbjct: 359 TFA-PLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFP---LFEFINHTESFVEFY 414 Query: 303 INGIKADEADIPADKL---------MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKA 353 + G+ A I +L A+P E E D V G P+ QK Sbjct: 415 VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPL------QKT 468 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 + + + + + + ++ + LF ++ + L ++L L Sbjct: 469 LLDQHKLEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKELERVLP 528 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK 473 +++++V + LL E VS++++ +I L+ +D +++A VR L I H + Sbjct: 529 VTKVVEVLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQHTHE 588 Query: 474 QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMK---A 530 ++L V+ L E E L+ G V +DS + LN+ + V+EQ + Sbjct: 589 RKLKVFMLGVEFEQLIRESSRSDGNGSFVDIDS-----SSLNEL---IEIVEEQCRPHLV 640 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 P ++ R + + + VLS+ E+ +E++++G Sbjct: 641 GNYVPAIVCSMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLG 686 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 173/590 (29%), Positives = 279/590 (47%), Gaps = 36/590 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV ARF LDAMPGKQM+ID + +G I+Q +A+ +R D+ Sbjct: 123 FLIITIAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA KFV+GDA+AG++I+AINLIGG+ IG + L+ A Y L+T+GD Sbjct: 183 RESQFYGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN---GDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL++QIP+L+++ AA +VTRV D++ ++ QL AS L A I+F +VP Sbjct: 243 GLISQIPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVP 302 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEA--------EEKSLETLTRTITETSEQQVSW 235 G P + F + L G + K+ A E E + + R + + Sbjct: 303 GFPLIVFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHIAGNLPGA 362 Query: 236 ETIPLIEPISLSLGYKLVALVDKAQGNPL-----TQRIRGVRQVISDGNGVLLPEIRIRE 290 + L + ++L + + G L +R + + I + G+ +P I Sbjct: 363 GS-------DLGMAHRLTLTMGEGLGERLPPPLFAERTESLAEAILEDLGIRVPAIGRLT 415 Query: 291 NFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDP-AYGMPVTWIQA 349 + RL +++ I G+ + + D LMA + + P G+ + WI Sbjct: 416 DARLATAEFRIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDR 475 Query: 350 AQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLS 409 + A G ++A V+ T V +++R Y PD + + L RL T L +++ Sbjct: 476 SHAAALDAAGVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVL 535 Query: 410 AALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP 469 ++ +L V R L+ E V + ++ I + ++ LA VR L R I Sbjct: 536 DVVSAQRLSDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFR 595 Query: 470 FVRKQEL-TVYTLNNELENLLTNVV--NQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 + + Y L E+ L V N G + P+ L + + + Sbjct: 596 LADSNRIVSAYLLTRPFEDELRAAVEKNSGPAGAVPERLAAPI----LEELKKRREKAGA 651 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 Q +AA + L +R LL R+ A VLSY E+ E ++ +G Sbjct: 652 QSRAAILTSMDL-RRHIRNLLMRHDVQMA----VLSYQEIAAEFSVQCLG 696 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 183/586 (31%), Positives = 300/586 (51%), Gaps = 36/586 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKGA+R++EV ARFTLD MPGKQM+IDAD+ AG ++Q A+ R+++ Sbjct: 119 FLIITVVQFLVITKGADRVAEVGARFTLDGMPGKQMSIDADVRAGNMDQLDARHARQNLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA +GAMDGA KFV+GDAIAG++I INL+GGV IG+ + + A Y L+T+GD Sbjct: 179 REAKLFGAMDGAMKFVKGDAIAGLVITVINLVGGVAIGMAQRGVGFGEALSLYALLTVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD-NG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLVAQIP+LL+S AA +VTRV++ NG D+ ++ Q +A+ + A I+ + +VPG Sbjct: 239 GLVAQIPALLISVAAGNMVTRVTNPNGMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPG 298 Query: 185 MPHLPFL-LFSALLGFTGWRMSKQP---LAAEAEEK-SLETLTRTITETSEQQVSWETIP 239 P F+ + SA+ G W + +Q L+A+ + L+ L R E + + + E + Sbjct: 299 FPTWIFVSVGSAMTGGVIWTIRRQHRDVLSAQTDWSLRLDLLQRQCAEIAMRTGAKEAVR 358 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIR-GVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 LI P + YKL D + +R + Q G L E+ P Sbjct: 359 LILPKEI---YKL----DVTAFFSAFEAVRISIAQEYGIPTGYWLFEVD-----EGSPHS 406 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGV---QGNDPAYGMPVTWIQAAQKAKA 355 Y I++N AD AD L + + +Y + G+ G G V Q + A+ Sbjct: 407 YQIYVNQELADCGIFRADSLF-VKAHTSYLDALGIPWLSGFGRREGALVPTDQEQRLAEE 465 Query: 356 LNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYS 415 + ++ ++ + H+ ++ + + + +IT + N + + P L DL A + + Sbjct: 466 NIVYWRPMEQ---LLMHLKRVAVERLDVMASLQNITAILNEVQTNNPALVGDLREAASNN 522 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE 475 Q+ V R LL E + + V I ++ S D LA VR+ + IT F Sbjct: 523 QIAGVIRNLLRERIPVTSRVRILEGILKWSQKRPDPGYLAQKVRIEIADFITKRFAADGF 582 Query: 476 LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 L V ++ +E+L+ + ++G ++L +P++ Q+ + G DP Sbjct: 583 LPVVVVSPTVESLMREGMRNTEEGNFLIL-----EPSISAYIAKQAKQICGEEFRRGHDP 637 Query: 536 VLLVPPQLRPLLARYARLFAPGLH--VLSYNEVPDELELKIMGALM 579 VL++ +R LA + L+ G+H VL+Y E+ E + +G L+ Sbjct: 638 VLIMQQDVR--LAMHNILYEHGIHLPVLAYQEITPETVIYPVGFLL 681 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 168/578 (29%), Positives = 288/578 (49%), Gaps = 52/578 (8%) Query: 12 TINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADF 71 + FIV+TKG+ER++EV+ARF LD MPGKQM+IDADL G+I+ A+ RR + E+ Sbjct: 123 VVQFIVITKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLERESQL 182 Query: 72 YGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQ 131 YGA DGA KF++GDAIA +++ +N IGG+ +G+ ++++ A + L+TIGDGLV Q Sbjct: 183 YGAFDGAMKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGDGLVGQ 242 Query: 132 IPSLLLSTAAAIIVTRVSDNGD-IAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPF 190 IP+LL+S +A +IVTRV+ +GD + ++ QLL +P VL + + ++PG P F Sbjct: 243 IPALLISISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVF 302 Query: 191 LLFSALLGFTGWRMSKQ----PLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 ++ + LG +Q PL A A+ +++ E + +I +S Sbjct: 303 VMLAMALGTLLLMRQRQTRVVPLPAAADYAG----------GYPERIMPEALAVILQVSR 352 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 + Y A ++K Q L +R+RG Q + D GV LP + + + +N I Sbjct: 353 A-NY---ARLEKEQ---LCERLRG--QFLID-FGVALPPLMLCPCEHTDDRTVVVVLNEI 402 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKA--KALNMGYQVID 364 +AD + D L + + G+ P P + Q+A AL+ +++ Sbjct: 403 RADVFTLHFDMLRRV-----------IPGDRPCP--PDVTLHQEQEAVWAALDDRERLLA 449 Query: 365 SASVIATHVNKIVRSY-------IPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQL 417 + V+ V+++ + + + F + L +++ S AP L +++ ++ Sbjct: 450 TGCVLRPAVDELYHCFAVMLTHHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHATVQRI 509 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT 477 ++ + LL E +S+R + I + + KD L VR AL R I H F L Sbjct: 510 AELLQRLLMERISIRHLKLIMEAMALWAPREKDVSALVEHVRCALARYICHQFAADNLLR 569 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVL 537 V L++E+E L + ++ G + L V ++ F S + E + A +D VL Sbjct: 570 VIMLSSEVEETLRDSLHTTSAGTFLNLGP-QVSEELMELFTSAL----ESLPIAQRDIVL 624 Query: 538 LVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIM 575 L +R + + L VLS+ E+ + + + ++ Sbjct: 625 LAAADIRRFIKSLIQHRFRDLEVLSFGELTESVTVNVI 662 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 174/592 (29%), Positives = 283/592 (47%), Gaps = 34/592 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV+ARFTLDAMPGKQM+ID DL G I+ +A+ RR + Sbjct: 123 FLIITVAQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++IL +NL+GG+ IG+ + + A Y L+T+GD Sbjct: 183 RESQMFGAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG---DIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL+AQIP+LL+S AA +VTRV+ +G D+ ++ QL AS L I+ + ++P Sbjct: 243 GLIAQIPALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLP 302 Query: 184 GMPHLPFLLFSALLG---FTGWRMSK-----------QPLAAEAEEKSLETLTRTITETS 229 G P L F+ +A+LG F WR + Q AE + + + + Sbjct: 303 GFPLLVFVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAA 362 Query: 230 EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR 289 E + P + LS+G L + A PL QRI + I GV +P + Sbjct: 363 EDALESAERPRDSQVLLSIG---TGLAEAAPLQPLRQRIEALCHDIRINLGVEVPLPEVY 419 Query: 290 ENFRLKPSQYAIFINGIKADEADIPADKLMAL--PSSETYGEIDGVQGNDPAYGMPVTWI 347 + L ++ + + G+ E + L+ P ++ + P P W Sbjct: 420 LDRSLPVDRFQVELEGVPVSEGEFSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWA 479 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 + + G + + V+ +++ +R Y D + + +L L ++ Sbjct: 480 GREHADRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKE 539 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + L ++ + R L++EGVS+R + +V ++ D L +R L R I+ Sbjct: 540 VLRILPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQIS 599 Query: 468 HPFV-RKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVD--PNMLNQFQSTMPQV 524 H + R + ++ + L LE L + + ++ DS+P D +L Q + + Sbjct: 600 HQYADRNRVISAFVLAPALEEQLRATLARQEKSR----DSLPDDIGRTVLVQLRRLCDML 655 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 E VLLV +LR + R L VLS+ E+ E L+ +G Sbjct: 656 PEH-----DLTVLLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVG 702 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 176/596 (29%), Positives = 304/596 (51%), Gaps = 48/596 (8%) Query: 12 TINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADF 71 T+ FIV+ KG+ER++EV ARFTLDA+PGKQM+IDADL +GL++ +A+ +R +A E+ Sbjct: 121 TVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLAVESQL 180 Query: 72 YGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQ 131 +G MDGA KFV+GDAIAG++I IN++ G+ +G+ + +SA A ++ ++++GD +V+Q Sbjct: 181 HGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ 240 Query: 132 IPSLLLSTAAAIIVTRVSDN-----GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 IPSLLLS AA +++TRV+D + ++ +QL +S LY A ++ A VPG P Sbjct: 241 IPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFP 300 Query: 187 HLPFLLFSALLGFTGWRMSKQ--PLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 F+L +A L F G+R+S++ P + A + E L R + + + +P Sbjct: 301 AALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEAL-RAMQRSGAKADVPPILPRAPQF 359 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGV---RQVISDGNGVLLPEIRIRENFRLKPSQYAI 301 + ++G ++ D A G L + + R + D G+ P + + + L + + + Sbjct: 360 ACAVGVRIAP--DLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATFEV 417 Query: 302 FINGIKADEADIPADKLM------------ALPSSETYGEIDGVQGNDP-----AYGMPV 344 I+ + +PA K M AL + D ++ ++ A G Sbjct: 418 LIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQAT 477 Query: 345 TWI-QAAQKAK-ALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAP 402 WI + A AK ++ Q+I ASV A +R++ P ++ + ++L + +P Sbjct: 478 HWIDEPAVTAKDSVWRAEQIIAYASVAA------IRTHAPLFVGIQEVQWILDQLGADSP 531 Query: 403 RLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLAL 462 L ++ L +++ V R LL E +S+R++ TI LVA KD ++L VR L Sbjct: 532 GLVAEVLKILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGDL 591 Query: 463 RRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPN-MLNQFQST 520 R + H + + L+ + + E + + Q G + L P D + ++++ QS Sbjct: 592 SRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALP--PDDASRLVDRIQSL 649 Query: 521 MPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 + A D L+ +R + R L V SY E+ + +EL+ +G Sbjct: 650 VG------ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVG 699 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 220/379 (58%), Gaps = 12/379 (3%) Query: 37 MPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAIN 96 MPG+QM+IDADLN G I+QA+AQ RRK++ EA FYGAMDGASKFV+GDAIAG++IL IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 97 LIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAH 156 +IGG+ IG+ ++ L A + Y L+TIGDG+V Q+P+L+++ IIVTR + +G+++ Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 157 DVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEK 216 +V Q+ + P L + L PG+P LP L+ A++ W + + + AE+ Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNA-SNSAEDG 179 Query: 217 SLETLTRTITETSEQQVSWETIPL----IEPISLSLGYKLVALVDKAQGNPLTQRIRGVR 272 + + + ++ E P +EPI + +G + ALV + G+ L RI R Sbjct: 180 TAPADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVSQP-GSVLMDRIATFR 238 Query: 273 QVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDG 332 + + G++LP +R ++ RL +Y I I+G+ + AD+L+A+ + G DG Sbjct: 239 KQHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPT---GRTDG 295 Query: 333 VQGN---DPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDD 389 + G DP YG+P WI+ Q+A A + ++D+ +V TH+ +++R L + Sbjct: 296 MPGEPTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAE 355 Query: 390 ITQLHNRLSSTAPRLAEDL 408 + +L NR+ L E+L Sbjct: 356 VDRLLNRVRQNQASLVEEL 374 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 161/510 (31%), Positives = 255/510 (50%), Gaps = 39/510 (7%) Query: 7 LLTLLTI-NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDV 65 + T++TI FIV+TKG ER++EVSARF+LD MPGKQM+ID DL AG+I+ A+T R+ V Sbjct: 126 VFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHV 185 Query: 66 ASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIG 125 E+ F GAMDGA KFV+GD IAG++++ +N+IGG+ I I +Y++S A Y +++IG Sbjct: 186 QQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIG 245 Query: 126 DGLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 DGL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L ++ +LA++P Sbjct: 246 DGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIP 305 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 G P + FSALL P+ +KS+ ++ E E+ +P P Sbjct: 306 GFPFITLAFFSALLAL--------PIILIRRKKSV--VSANGVEAPEKD---SMVPGACP 352 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR------ENFRLKPS 297 + L L L L + I +R + + GV LPE+ I E + Sbjct: 353 LILRLSPTL-------HSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLY 405 Query: 298 QYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALN 357 Q +F I A AD L+ + G+ + P + W+ KA Sbjct: 406 QEPVFSLSIPAQ-----ADYLLIGADASVVGDSQTL----PNGMGQICWLTKDMAHKAQG 456 Query: 358 MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQL 417 G V + I+ + ++ ++ + + L N + L ++L L +++ Sbjct: 457 FGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKI 516 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQEL 476 + + L++E VS+RD+ I L+ + KD ++L VR+ALRR I + L Sbjct: 517 AETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPL 576 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDS 506 + + +ENL+ + Q G L S Sbjct: 577 PILRIGEGIENLVRESIRQTAMGTYTALSS 606 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 169/582 (29%), Positives = 278/582 (47%), Gaps = 28/582 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L I FIVV KGA+R++EVSARFTLD +PG+QM+IDADL GLI ++A R ++ Sbjct: 125 FIVLSAIQFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E FYG++DGA KFV+GDAIAG+++ +N+ GG+ +GI + +S A Y ++T+GD Sbjct: 185 RETYFYGSLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIPSL++S +A ++VTRVS G++ D+ QL A P + A LA +P Sbjct: 245 GLVSQIPSLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIP 304 Query: 184 GMPHLPFLLFS-ALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 G PH+ F+L + L+G M ++ A A + +TR ++ + + Sbjct: 305 GFPHIQFVLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSS 364 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 P+ + LG ++ A+ N ++R R +I GV P + + + RL +Y + Sbjct: 365 PLRVRLGSAACNALNAAELNDQLAQLR--RDLIVR-LGVPFPGLVLLRDPRLDVDRYIVD 421 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 I+ + + A ++ +E ++G G P V W++A A + Sbjct: 422 IDDVPFSGGTLLAGHVLVSGDTERV-TMEGPPGYHPRAEKSV-WVRADSAAGIDDTQLMK 479 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + ++ H+ + P + L N + + L + +Q+ V R Sbjct: 480 SSANGLLCDHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVTVAQKVVTTAQIAAVLR 539 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF--VRKQELTVYT 480 +LL + VS+R++ I +V + H + D R+AL + + + E+ Sbjct: 540 SLLEQRVSIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAV 599 Query: 481 LNNELENLLTNVVNQAQQGG-KVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 L E L ++ G + +LD+ + L Q AA D V LV Sbjct: 600 LEPSWEAELEAQIDLGPDGEPRCVLDA-----DRLESLQRGF--------AARNDVVRLV 646 Query: 540 --PPQLRPLLARYARLFAPGLHVLSYNEVP-DELELKIMGAL 578 LRP L R R VL+ E+P DE ++++ L Sbjct: 647 VTTAVLRPHLERVLRTLGMRTDVLAMEEIPLDEYRVRVIATL 688 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 168/581 (28%), Positives = 281/581 (48%), Gaps = 45/581 (7%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KGAER++EV+ARFTLDAMPGKQ++ID+DL AGLI++ +A+ +R+ + Sbjct: 129 FLIITVVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLE 188 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIAG++I+ INL+GG+ IG+ + + A Y ++TIGD Sbjct: 189 VESQLHGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGD 248 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAH---DVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIP++L + AA ++VTR + + D H + Q+ P VL + F + VP Sbjct: 249 GLVSQIPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVP 308 Query: 184 GMPHLPFLLFS-ALLGFTGWRM-SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLI 241 G P L FL+ S LLGF WR P+ A + + E+ V+ + I Sbjct: 309 GFPKLVFLMLSVVLLGFAAWRYRHHHPVLRRAFK-----VPEGERPAEEKTVNEDEIAPP 363 Query: 242 EPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAI 301 P+ L L L A + T+ + R R+RE + + A+ Sbjct: 364 APLQLELAPSLAAAFGEHAAR--TRIVEIAR--------------RLREEYGVPLPVPAL 407 Query: 302 FINGIKADEADIPADKLMALPSSETYGEID-------GVQGNDPAYGMPVTWIQAAQKAK 354 I+ + + +L A + +G + G+ A +P + A + Sbjct: 408 KISPDLDGDDGLGGYRLTAFGARLAFGRLSPNAQFRPARAGDANAPKLPGFFPPLAGEWT 467 Query: 355 ALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNY 414 G + D + ++ H + + + + L R+ P L +++ + Sbjct: 468 G-QAGADIRDGLATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEMLRVVAP 526 Query: 415 SQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-K 473 ++ V R L+ EGV +R++ + KD +LL VR+AL+R I + + Sbjct: 527 QRVADVLRRLVEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGE 586 Query: 474 QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQM--KAA 531 + + V ++ ELE+ L V A GG L + P + + + +V+ + + Sbjct: 587 RTMQVLLIHPELEDRLRQSVRVA--GGATQL---AISPELAGRLGA---EVRSHLARQGE 638 Query: 532 GKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELEL 572 G PVLL +R L + + L VLSY E+ +L + Sbjct: 639 GIKPVLLCSLDVRRHLRKLLEIDFFELPVLSYQELAPDLRI 679 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 160/580 (27%), Positives = 280/580 (48%), Gaps = 69/580 (11%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL G + +A+ +R +A Sbjct: 121 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLA 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ +G+ + ++A A ++ ++++GD Sbjct: 181 MESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD-----IAHDVRNQLLASPSVLYTATGIMFVLAV 181 +V+QI SLL+S AA +++TRV++ + + D+ QL ++ L A+ ++ A Sbjct: 241 AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAF 300 Query: 182 VPGMP---HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETI 238 VPG P L G+T WR KQ + +++ L + +R + + Sbjct: 301 VPGFPAVLFLLLAAAVGAGGYTIWR--KQRDISGTDQRKLPSASRKGAKGEAPHIRKNAP 358 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 P+S+ L +L AL+D A+ L Q I R+ + + G+ P I I + L+ Q Sbjct: 359 DFASPLSMRLSPQLAALLDPAR---LDQAIESERRQLVELLGLPFPGIAIWQTESLQGMQ 415 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y + I+ D+P ET E++ +QAA +A++ Sbjct: 416 YEVLIH-------DVP----------ETRAELENTDD-----------MQAALARQAISP 447 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 + R+++ + + +++ P L +++ A+ ++ Sbjct: 448 LH----------------ARAHL--FVGIQETQWMLEQVAVDYPGLVAEVNKAMPAQRIA 489 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELT 477 V R LL E + +R+I +I LV KD ++L VR L R + H +L Sbjct: 490 DVLRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLP 549 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVL 537 L++ +E L+ + G + L P NQ + QV+ + + P+ Sbjct: 550 AVMLDHAVEQLIRQSIRATAAGNFLAL-----PPEQANQL---VEQVERIVGDHAQHPLA 601 Query: 538 LVPP-QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 +V +R + R L V S+ E+ E++L+ +G Sbjct: 602 VVASMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPIG 641 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 177/598 (29%), Positives = 289/598 (48%), Gaps = 52/598 (8%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KG+ER++EV ARF+LDAMPGKQM+IDADL AG+I+ +A+ RR+ + Sbjct: 152 FLVIAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLE 211 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I IN++ G+ +G + + A Q+Y ++T+GD Sbjct: 212 QESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGD 271 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG----DIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 G+ +QIPSLL+S AA I+ TRV+ + + QL A P L A ++ VV Sbjct: 272 GMASQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVV 331 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQ---VSWETIP 239 PG P F L + LG + +++ A +L + I T + Q VS Sbjct: 332 PGFPKWSFALIA--LGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVS-HAAG 388 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 + I++SL L ++ AQ L + + + G + P I + ++ Y Sbjct: 389 VTSLIAVSLSDDLRTTLNLAQ---LQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTY 445 Query: 300 AIFINGIKADEADIPA-----DKLMALPSSETYGEIDGVQGNDPAYGMPVT--WIQ---A 349 I++ + A + D + LP + A+G T WI+ A Sbjct: 446 RIYLQDVLAAHGALKPGWLLWDGVAPLPERAERQPAE-------AFGPFATALWIKPDGA 498 Query: 350 AQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLS 409 A K L S +A HV ++VR + +L + L + + P L +L+ Sbjct: 499 APDGKWLT-------SEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELT 551 Query: 410 AALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHIL-LAADVRLALRRSIT- 467 + ++ +V R LL E V +R++ I L+ + D ++ L VR+ LRR IT Sbjct: 552 RLVPLQRVTEVLRRLLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITD 611 Query: 468 -HPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 H +Q L V L+ + + V + +QG + L S + ++ Q ++ + + Sbjct: 612 RHAGAARQ-LRVVLFEQNLQERIESAVMRTKQGNFLALSSA-IKQDIGEQVRAIVQAAQA 669 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFA--------PGLHVLSYNEVPDELELKIMG 576 +P P+L ++A AR + P L VLSY EV ++++L +G Sbjct: 670 AGAGGHGNP--QGAPRLAVMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVG 725 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 170/586 (29%), Positives = 276/586 (47%), Gaps = 84/586 (14%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV++KGAER++EV+ARF+LDAMPGKQ++ID+DL +GLI + +A+ RR+ + Sbjct: 122 FLIVTVVQFIVISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLE 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIA ++I+ INL+GG+ +G+F + + A A Q + ++TIGD Sbjct: 182 LESKLHGSLDGAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLVAQIP+L + AA ++VTR +D +G + + Q+ + P VL A + ++A++P Sbjct: 242 GLVAQIPALFSAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIP 301 Query: 184 GMPHLPFLLFSALLGFT---------GWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS 234 G P F+ + LG W M K A +K + L +T+ E Sbjct: 302 GFPAAVFIGIAFALGSAAAWQHPVSHAWIMGK----AARFDKGEKPLPQTLAAQPEAPRP 357 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRL 294 + P+ L + + + L R V + + G+ +P + RL Sbjct: 358 ------VRPLVLEIAAPALDAAQAER---LRARFVLVIEAVQARLGLPMPAGEV--TTRL 406 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAK 354 P E + P L A + GE+DG P I+A + Sbjct: 407 LP-------------EGERPRWTLSAYEAPVGSGEVDG-----PFEEAIAPAIEALLRRN 448 Query: 355 ALN-MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 A +G Q T +N++ Y PDL + ++ +SS PR+AE Sbjct: 449 AARFLGLQ------ETTTMLNRMGADY-PDL-----VKEVVRAVSS--PRIAE------- 487 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK 473 V R L E V LR++ + + ++ + +A R+ALRR I P + Sbjct: 488 ------VLRLLAEEEVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHMAD 541 Query: 474 QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK 533 V + LE + + + G L P +Q ++ + ++ + G Sbjct: 542 GRFPVLVVGGRLERFFRDNLQTVE--GVAHLAMPP------DQARTLIGMIRSETAKCGA 593 Query: 534 DPVLLVPPQLRPLLARYA-RLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ RPL A LF GL +L YNE+ L L ++G L Sbjct: 594 RAIITAYDLRRPLRQLTAGDLF--GLPILCYNELTPALPLDVVGTL 637 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/182 (52%), Positives = 131/182 (71%), Gaps = 2/182 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL +G I+ AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDAIAG++I+A+NL+GG+ IGIF+ LS A Q Y L++IGD Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ AA +VTRVS ++ ++ ++ QL+ P L A I ++PG Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299 Query: 185 MP 186 P Sbjct: 300 FP 301 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 8/211 (3%) Query: 337 DPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNR 396 DP G + IQ L + + A +IA + +IVR + +F+ DD TQ Sbjct: 401 DPRMGEDMIHIQVENVPAGL-ISCKADRPAELIAQDIVRIVRRHTGSIFSVDDATQWLAS 459 Query: 397 LSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAA 456 L +LA D+ ++ L+ V R LL GV+L + ++ +D LA Sbjct: 460 LEPRLGKLAIDVRTQVSPMLLVAVIRRLLDSGVTLSQPRGLLETMLKIEPHEQDPDKLAE 519 Query: 457 DVRLALRRSITHPFVRKQELT-VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLN 515 R AL R I + ++ L V + + E E + + + + + K + + N Sbjct: 520 KARWALSRQIAFGLLDQRGLLPVLSFSPEWERFVRSYSDASDKTEKEEISEKL--RRLAN 577 Query: 516 QFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 + + + E+ G DPV+++P +LR L Sbjct: 578 ETKDALVDANER----GFDPVVVMPGELRFL 604 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/182 (53%), Positives = 127/182 (69%), Gaps = 2/182 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL G I AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRSRLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDA+AG++I+A+NLIGG+ IGIF+ LS A Y L++IGD Sbjct: 180 QESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD--NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ +A I+VTRVSD NG + D+ +L P L A + VPG Sbjct: 240 GLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGFVPG 299 Query: 185 MP 186 P Sbjct: 300 FP 301 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 13/215 (6%) Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRAL 424 +A IA + +IVR +I LF+ DD Q L +LA D++ + + V R L Sbjct: 423 TAEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAIDVATQVPLMLTVAVVRRL 482 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHI--LLAADVRLALRRSITHPFV-RKQELTVYTL 481 L GV+L + V++ + T DH LA R AL + I + R+ L L Sbjct: 483 LDSGVTLSQPRGLLEVMLHAGT---DHAPDALAEMARAALVKQIAFGLLDRRGLLPALVL 539 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 E ++ + + + A K+ + L Q E G DP+++VP Sbjct: 540 PAEWDHFIRS-YDAAGATEKIEI------AERLRLLAEKARQALEDANERGYDPIIIVPG 592 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 + R L + VL+ E+ ++ ++ +G Sbjct: 593 EWRLLTQTLMIHHNCRIPVLAAEEIDRDITIETIG 627 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 86/169 (50%), Positives = 122/169 (72%), Gaps = 1/169 (0%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L + F+V+ KGAER++EV ARFTLDAMPGKQM+IDAD+ AG+I+ +AQ RR V+ Sbjct: 123 FVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVS 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAGM++ +N++GG IGI ++ ++A A Y ++TIGD Sbjct: 183 QESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATG 174 GLV+QIPSLL+S +A I++TR D+ G++ + Q+ P L A G Sbjct: 243 GLVSQIPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGG 291 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 134/206 (65%), Gaps = 7/206 (3%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI+ QAQ R D+ +E + Sbjct: 123 VQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLGTENKLF 182 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + +++ ++TIGDGLV+QI Sbjct: 183 GSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGDGLVSQI 242 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLAS-----PSVLYTATGIMFVLAVVPGMPH 187 PSLLLS A + +TR+ + D + +Q++A S+L IM + + P + + Sbjct: 243 PSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLLNPTLMY 302 Query: 188 --LPFLLFSALLGFTGWRMSKQPLAA 211 LP + ++ W+ ++ A Sbjct: 303 VCLPLAVLCIVMALLLWKKNENTAVA 328 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/166 (45%), Positives = 114/166 (68%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI QAQ R D+ Sbjct: 124 FIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQAQKLRADLG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E +G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + ++ ++T+GD Sbjct: 184 TENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVSRFSVLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTA 172 GLV+QIPSLLLS A + +TR+ + D + QL+ + + Sbjct: 244 GLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKS 289 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/175 (50%), Positives = 125/175 (71%), Gaps = 5/175 (2%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KGA+R++EV ARF+LDA+PGKQMAIDADL AG+I++A A RR+ + + FYGAMDGAS Sbjct: 136 KGADRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGAS 195 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGI-FKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 KFV+GDAIAG++I +N++GG+ IG + AD A + Y ++T+GDGLV+QIPSLL+S Sbjct: 196 KFVKGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTA-RLYTVLTVGDGLVSQIPSLLIS 254 Query: 139 TAAAIIVTRVS---DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPF 190 AA I++TRV+ + D+ +Q+ + P ++ A + A+VPG P L F Sbjct: 255 FAAGILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAF 309 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 119/196 (60%), Gaps = 13/196 (6%) Query: 18 VTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDG 77 +TKGAERI+EV ARF+L+A+PGKQM++DAD+ AG I ++A ++ + E+D++ AM+G Sbjct: 150 ITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEESDYFSAMEG 209 Query: 78 ASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLL 137 +FV+GDAI ++L +N++ + +G + D L +GD LV+QIP+LL Sbjct: 210 VFRFVKGDAIMSWVLLGVNILAALFLG--RATHVGD-----LWLTVLGDALVSQIPALLT 262 Query: 138 STAAAIIVTRVSDNGDIAHDVRNQLLAS-PSVLYTATGIMFVLAVVPGMPHLPFLLFSAL 196 S AAA ++ +V + +A + + S S L+ A I+ +A +PG P L FS L Sbjct: 263 SCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIAL-ILCGMACIPGAPKALILGFSVL 321 Query: 197 LGFTGWRMSKQPLAAE 212 L F G+ K P + E Sbjct: 322 L-FLGY---KNPSSGE 333 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 111/190 (58%), Gaps = 5/190 (2%) Query: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 L L +NF++V+KG+ERI+EV +RF L+A+P KQMA+D+DL +G + + ++ + Sbjct: 113 LLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIE 172 Query: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 E DF+ AM+G +FV+GDAI ++L +N++ C+ ++ A +Q +GD Sbjct: 173 EGDFFSAMEGVFRFVKGDAIISCILLLVNVVSVTCL-----YYTSGYALEQMWFTVLGDA 227 Query: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 LV+Q+P+LL S AAA +++++ + + + + ++F L +P P Sbjct: 228 LVSQVPALLTSCAAATLISKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPK 287 Query: 188 LPFLLFSALL 197 P +L ++LL Sbjct: 288 FPIVLLASLL 297 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 136/220 (61%), Gaps = 11/220 (5%) Query: 1 MLSRSDLLT-------LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 ++ R DLL + I ++V+ +GAER++EV+ARFTLD++PG+Q+AID + G I Sbjct: 95 LVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERARGQI 154 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 +A+ RR ++ ADF+G MDG + V+GDA+ G++I AINL+GG IG+ + Sbjct: 155 GADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGM-RQGAGLV 213 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVR-NQLLASPSVLYTA 172 + Y + +GDGL+AQ+P++LL+ AAA++V+RV D D A R L +P +L A Sbjct: 214 ESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRV-DRRDAARSPRLFDWLEAPMLLAPA 272 Query: 173 TGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAE 212 T ++ VLA VPGMP L F L +++ P AA+ Sbjct: 273 T-LLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAK 311 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/403 (27%), Positives = 190/403 (47%), Gaps = 20/403 (4%) Query: 184 GMPHLPFLLFSALLGFTG----WRMSKQPLA--AEAEEKSLETLTRTITETSEQQVSWET 237 G+P PF L + F G R ++Q A AEA +K E + E + + S ET Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQARQREADAAEAGKKQREAEEQ---ERNSVKASLET 177 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 I L LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Sbjct: 178 ----NQIELCLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPK 232 Query: 298 QYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALN 357 Y I I+G ++ +++ + + G + +PA+GM + A Sbjct: 233 SYRIKIHGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRR 292 Query: 358 MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLS-AALNYSQ 416 GY +D+ SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS Sbjct: 293 EGYMTVDNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSG 352 Query: 417 LLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQEL 476 L V + LL E +S+R++ I + + + + ++ VR+ + + I L Sbjct: 353 LQAVLKLLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVL 412 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 V L N + + + + +G V D +DP +L QF + + G+ V Sbjct: 413 NVLRLGNRWDLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFV 469 Query: 537 LLVPPQLRPLLAR-YARLFAPGLHVLSYNEVPDELELKIMGAL 578 L+ P+ RP + RLFA L VLS+ E+ +E+K +GA+ Sbjct: 470 LVSSPEARPYIRMIIERLFAT-LPVLSHVEIARGVEVKSLGAI 511 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 176/369 (47%), Gaps = 19/369 (5%) Query: 206 KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLT 265 K P AE EEK + ++ +++E W + ++ +SL +G L+++V + Sbjct: 92 KSPWYAEPEEK----VEASLPDSTE---PWRSYLAMDRLSLEVGQSLISIV-APESKDFF 143 Query: 266 QRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSE 325 R+ VR ++D G+++P IR+R+N +L ++Y I I+ + A K +AL Sbjct: 144 DRMTAVRCQLADSLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGT 203 Query: 326 TYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLF 385 +DG G DP +G P WI+A Q+ +A GY VI+ + ++ TH+ + +R + ++ Sbjct: 204 ATETLDGSPGVDPTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEML 263 Query: 386 NYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLKVYRALLTEGVSLRDIVTIATVLVAS 444 DD+ +L E+L A+ L+ S + V LL EGVS+++ + LV Sbjct: 264 TLDDVRRLIEMQRDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRH 323 Query: 445 STVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNELENLLTNVVNQAQQGGKVM 503 T D LL A VR+ L R I ++ R + L +LE+ L +N A G K Sbjct: 324 GARTGDVELLVAAVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLE-LNDAGAGRKAR 382 Query: 504 LDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSY 563 P +++ + Q++EQ + L+ LR L R P + VLS+ Sbjct: 383 ----PWVERLIDNLADSFQQLEEQQQPTA----LVTSIDLRCNLWRMITAQLPRVAVLSF 434 Query: 564 NEVPDELEL 572 EVP E+ Sbjct: 435 AEVPRNTEI 443 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 9/313 (2%) Query: 264 LTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPS 323 +RI R +D +G + P + R++ +L P +Y + + G + +A + +A+ Sbjct: 17 FAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTRFGQAATYPGRTLAIHP 76 Query: 324 SETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD 383 + G + G +PA+G+P WI Q+ +A +G+ +D + + THV ++++++ Sbjct: 77 AGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVTALLTHVTELIKTHAAR 136 Query: 384 LFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLV 442 LF + L + + + P L ++ + L + +V + LL E V +RDI I L Sbjct: 137 LFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLAEQVPIRDIDLIVQTLA 196 Query: 443 ASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELE-NLLTNVVNQAQQGG 500 + KD L VR L +I +++ L V TL+ LE + N+ G Sbjct: 197 DVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPALEAEIARNLAGADGHGT 256 Query: 501 KVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHV 560 V+ DP + F + E M G P LL P +R L ++R AP L V Sbjct: 257 HVL------DPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRRALKTFSRRVAPRLVV 310 Query: 561 LSYNEVPDELELK 573 LS NEVPD + L+ Sbjct: 311 LSINEVPDAIPLR 323 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 169/327 (51%), Gaps = 19/327 (5%) Query: 42 MAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGV 101 M+IDADL AG++++ + RR+ + +E+ YGA+DGA KF++GDAIAG++I+ +NLIGG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 102 CIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVR 159 +G+ ++ + A Y ++IGD LVAQIP+LL+S + IVTRV + N ++ + Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 160 NQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALL---GFTG-WRMSKQPLAAEAE- 214 L A+ S L + + +PG P F++ SALL F WR + + E+ Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180 Query: 215 EKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQV 274 EK + ++ T + + ET+PL+ I+ + +K K + + L R+ ++ Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLM--ITFNETFK-----PKLEQHNLASRL---KKT 230 Query: 275 ISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK-ADEADIPADKLMALPSSETYGEIDGV 333 GV LPEI I + + I IN I AD IP + + E + V Sbjct: 231 FFIEYGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSV 290 Query: 334 QGNDPAYGMPVTWIQAAQKAKALNMGY 360 + + G+ W+ + A MGY Sbjct: 291 ESINTPQGVSY-WLPEEKADNAHKMGY 316 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 8/206 (3%) Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSL 431 ++++V + DL + Q+ LS +P+LAE+L ++ S LLKV +ALL+E V + Sbjct: 18 LDELVACHECDLLLRKPVLQV---LSKASPKLAEELVPGVISLSGLLKVLQALLSEQVPV 74 Query: 432 RDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLT 490 RDI +IA + ++ ++D L A VR+ L R+I V + EL V TL LE +L Sbjct: 75 RDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVITLEPRLEQILL 134 Query: 491 NVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARY 550 N + +A QG + D V ++P+M + Q ++ + ++ + G+ +LLV +R +L+R+ Sbjct: 135 NSLQRAGQGQE---DGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVAGPIRAMLSRF 191 Query: 551 ARLFAPGLHVLSYNEVPDELELKIMG 576 RL P LHVL+Y E+PD ++ I+ Sbjct: 192 GRLAVPNLHVLAYQEIPDNKQVTIVA 217 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 13/316 (4%) Query: 264 LTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPS 323 L + I G+R + GV LPE+ IR + L + ++ + + E +P D L+ Sbjct: 34 LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP 93 Query: 324 SETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD 383 + + V G A W+ A Q +A +G ++ I T + ++ Y + Sbjct: 94 CSSLVTNNQVLG---AKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAE 150 Query: 384 LFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVA 443 + L + + L ++L + ++ ++ + L+ E +S+RD+ TI LV Sbjct: 151 FIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVV 210 Query: 444 SSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQQGGKV 502 + KD ++L VR+ALRR + F K ++V L + +E+L+ + + Q G Sbjct: 211 WAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYS 270 Query: 503 MLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLS 562 L+ +LN+ ++ A +D VLL +R + + L VLS Sbjct: 271 ALEERQ-SLLILNKIKNAF--------AENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS 321 Query: 563 YNEVPDELELKIMGAL 578 + E+ DE+ LK+ G + Sbjct: 322 WQELGDEMNLKVAGTI 337 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 14/233 (6%) Query: 346 WIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLA 405 W+ Q G + A ++A H++ ++ + + L +R+ AP L Sbjct: 68 WVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLV 127 Query: 406 EDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 +++ L ++ ++++ L+ E VS+RD+ +I L+ S KD ++L VR AL+R Sbjct: 128 REVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTEYVRSALKRQ 187 Query: 466 ITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQV 524 I++ R Q L L+ +E + V Q G + L +P + +F + Sbjct: 188 ISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLAL-----EPAVTERFMKAVADA 242 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLH----VLSYNEVPDELELK 573 + PV++ +R RY R G H V+SY E+ E+ ++ Sbjct: 243 AGPYAQQTQKPVIMTSMDIR----RYVRRLIEGDHYTLAVMSYQELTPEISVQ 291 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 115 AFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTA 172 A Y +++IGDGL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L Sbjct: 3 AVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILT 62 Query: 173 TGIMFVLAVVPGMPHLPFLLFSALLGF 199 ++ +LA++PG P + FSALL Sbjct: 63 AVVLMLLALIPGFPFITLAFFSALLAL 89 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 15/170 (8%) Query: 115 AFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATG 174 A + L+TIGDG+ Q+P+L++S A IIVTR + + +++ +V QL + P + Sbjct: 6 ALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIPLIVAA 65 Query: 175 IMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS 234 ++ L ++PGMP P ++ + F WR ++ A A E E + T + Sbjct: 66 VLAALLLLPGMPKWPIVVIGT-IAFVAWRRIRKAAAEAAAEPVDEEVAAESTASP----- 119 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLP 284 P+ + LG L +G + RI G+R+V + G+ P Sbjct: 120 --------PLEIRLGEALSGAW-AGEGALVMDRIAGLRRVHEEQFGLPFP 160 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 25/295 (8%) Query: 206 KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLT 265 +QPL+ E +E S L + +VS ET+PLI + S L +KAQ L Sbjct: 13 EQPLSIEEKEGSSLGLIGDL-----DKVSTETVPLILLVPKSRREDL----EKAQ---LA 60 Query: 266 QRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSE 325 +R+R Q D GV LPE+ +R+ L + + IN I+ ++ + D + + S+ Sbjct: 61 ERLRS--QFFID-YGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSD 117 Query: 326 ---TYGEIDGV--QGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSY 380 ++G + QG+ + W+ + K +GY + ++ + + + Sbjct: 118 EVVSFGINPTIHQQGSSQYF-----WVTHEEGEKLRELGYVLRNALDELYHCLAVTLARN 172 Query: 381 IPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATV 440 + + F + + ++L + P L +++ ++ +V + LL+E VS+R++ I Sbjct: 173 VNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEA 232 Query: 441 LVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQ 495 L + KD I L +R A+ R I H F EL ++ E+E+++ + Q Sbjct: 233 LALWAPREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQ 287 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 474 QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK 533 ++L V + +LE ++T+ A Q D V +DPN+ + + G+ Sbjct: 4 EDLNVLVMEPKLEQMITHAHTAAGQ------DQVGIDPNLAENLARQTADAAGRQEQLGQ 57 Query: 534 DPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 PVLLVP LR +AR + AP L VLS++E+P+ +++ Sbjct: 58 SPVLLVPDALRLSMARLLKRAAPNLRVLSHSEIPENRTIRV 98 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 315 ADKLMALPSSETYGE-IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 A +++AL + + G ++G DP +G+ WIQ A GY V+D+ +VIATH+ Sbjct: 4 ATEMLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHL 63 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSS 399 N ++ +L D++ L + L + Sbjct: 64 NHVLTVNATELLGPDEVQALLDGLKA 89 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 41/66 (62%) Query: 509 VDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPD 568 ++P++ + +V ++ + G PVLLVPPQLR LL+R+ R P L V++ +EVP+ Sbjct: 132 IEPSLADGLLRHAAEVAQRQEDIGLPPVLLVPPQLRWLLSRFLRRAVPSLKVIANSEVPE 191 Query: 569 ELELKI 574 +++ Sbjct: 192 TRTIRV 197 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 730 0.0 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 711 0.0 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 681 0.0 UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 678 0.0 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 677 0.0 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 672 0.0 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 671 0.0 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 659 0.0 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 657 0.0 UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 656 0.0 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 654 0.0 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 652 0.0 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 649 0.0 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 648 0.0 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 645 0.0 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 643 0.0 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 635 e-180 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 629 e-179 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 627 e-178 UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 626 e-178 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 626 e-178 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 625 e-177 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 623 e-177 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 621 e-176 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 620 e-176 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 618 e-175 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 616 e-175 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 616 e-174 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 614 e-174 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 614 e-174 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 613 e-174 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 613 e-174 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 611 e-173 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 609 e-172 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 607 e-172 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 604 e-171 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 604 e-171 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 600 e-170 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 589 e-166 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 588 e-166 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 587 e-166 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 584 e-165 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 581 e-164 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 578 e-163 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 576 e-163 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 573 e-162 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 572 e-162 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 567 e-160 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 565 e-159 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 564 e-159 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 564 e-159 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 560 e-158 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 560 e-158 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 559 e-157 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 558 e-157 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 555 e-156 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 555 e-156 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 549 e-154 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 543 e-153 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 543 e-153 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 542 e-152 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 541 e-152 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 539 e-152 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 537 e-151 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 536 e-151 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 535 e-150 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 528 e-148 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 525 e-147 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 524 e-147 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 522 e-146 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 522 e-146 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 517 e-145 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 515 e-144 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 515 e-144 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 512 e-143 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 510 e-143 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 508 e-142 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 508 e-142 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 506 e-141 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 503 e-141 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 498 e-139 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 498 e-139 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 492 e-137 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 492 e-137 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 487 e-136 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 485 e-135 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 483 e-134 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 482 e-134 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 467 e-130 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 460 e-128 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 433 e-119 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 388 e-106 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 362 3e-98 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 351 5e-95 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 348 3e-94 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 338 4e-91 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 302 3e-80 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 296 1e-78 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 293 1e-77 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 289 3e-76 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 285 3e-75 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 269 2e-70 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 260 8e-68 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 259 2e-67 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 259 2e-67 UniRef50_UPI000190D087 possible secretory protein (associated wi... 224 6e-57 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 222 4e-56 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 200 9e-50 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 173 1e-41 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 128 9e-28 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 111 1e-22 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 83 3e-14 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 81 1e-13 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 69 5e-10 Sequences not found previously or not previously below threshold: UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl... 79 4e-13 UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T... 56 5e-06 UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re... 48 0.001 UniRef50_C9LWS1 Putative uncharacterized protein n=1 Tax=Selenom... 44 0.011 UniRef50_B7UR42 Predicted portal protein n=71 Tax=root RepID=B7U... 44 0.013 UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ... 43 0.050 UniRef50_B2KCW9 Major facilitator superfamily MFS_1 n=1 Tax=Elus... 42 0.073 UniRef50_UPI0001796DC4 PREDICTED: similar to membrane-spanning 4... 42 0.074 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 579/579 (100%), Positives = 579/579 (100%) Query: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT Sbjct: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 Query: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV Sbjct: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 Query: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA Sbjct: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL Sbjct: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA Sbjct: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY Sbjct: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV Sbjct: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 Query: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT Sbjct: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP Sbjct: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM Sbjct: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 558/572 (97%), Positives = 563/572 (98%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA Sbjct: 125 FIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD Sbjct: 185 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVR+QLLASPSVLYTATGIMFVLAVVPGMP Sbjct: 245 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMP 304 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPFLLFSALLGFTGWRMSK+P AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL Sbjct: 305 HLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 364 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI Sbjct: 365 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 424 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 KADEADIPADKLMALPSSETYGEIDGV GNDPAYGMPVTWIQ AQKAKALNMGYQVIDSA Sbjct: 425 KADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSA 484 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSS APRLAEDLSAALNYSQLLKVYRALLT Sbjct: 485 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLT 544 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 EGVSLRDIVTIATVLVASST+TKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE Sbjct: 545 EGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 604 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 NLLTNVVNQAQQ GKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK PVLLVPPQLRPL Sbjct: 605 NLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPPQLRPL 664 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LARYARLFAPGLHVLSYNEVPDELELKIMGAL Sbjct: 665 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 696 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 203/576 (35%), Positives = 336/576 (58%), Gaps = 11/576 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+V+ KG+ER++EV+ARFTLDAMPGKQMAIDADLN G I +A+ RR + Sbjct: 110 FIVLIIIQFVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQ 169 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA+K+V+GDA AG++I INL+GG +G+ L + A Q++ L+TIGD Sbjct: 170 KESSFYGAMDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGD 229 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSLL+S + I+VT+ S+ D + ++ QL + VLY + ++ VL ++ + Sbjct: 230 GLVSQIPSLLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLR 289 Query: 187 HLPFLLFSALLGFT--GWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 + +L + F G + K+ E+++ + + E + + ++ ++PI Sbjct: 290 NEWWLFIGLAVAFFVTGKNLDKKAGIESIEDETAQ--AESDAEEIRKPENVVSLLQVDPI 347 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L GY ++ L D QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I Sbjct: 348 ELEFGYGIIPLADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIK 407 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 GI+ E +I D MA+ EI G+ +P++ +P WI +Q+ +A ++GY V+D Sbjct: 408 GIQVTEGEILFDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVD 467 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 S+IATH+ +++RS+I +L D+ L N L + P + ++L L ++ KV + Sbjct: 468 PPSIIATHLTEVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQN 527 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLN 482 LL+EG+S+RD++TI L + T+D +L VR L+R+I+ + E T V TL+ Sbjct: 528 LLSEGISIRDLLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLD 587 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +E + + V Q +QG + L DP+ + ++ ++++ GK +++ P Sbjct: 588 PAVEQEIMSSVKQTEQGSYLSL-----DPDRIKAIIKSVETEIGKLESLGKSAIIITSPI 642 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + L VLSYNEV +EL+ +G + Sbjct: 643 VRMYFKKMTEDYFKDLIVLSYNEVESNVELQSVGMV 678 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 205/574 (35%), Positives = 326/574 (56%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I FIV+TKGAER+SEV ARFTLDAMPGKQM+IDADLNAGLI+ +A+ RR+ + Sbjct: 109 FLILIVIQFIVITKGAERVSEVGARFTLDAMPGKQMSIDADLNAGLISDREAKQRREKIE 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIA ++I+ IN++GG+ IG+ + + + A Y L+T+GD Sbjct: 169 HEADFYGSMDGASKFVKGDAIASIIIVIINMLGGLMIGMMQMGMDMNTAASTYTLLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+STA +IVT+ + G+++ D+ Q+LA P +LY + +L + + Sbjct: 229 GLVTQIPALLISTATGVIVTKAASEGNLSTDLSRQILAYPKLLYVTAATILLLGLATPIT 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + + LL F G+R+SK LA E++L L E S + ++PI Sbjct: 289 KVVTFSIAGLLAFAGYRLSKASLAKANFEEAL--LEEAPPEEPSGPESVVQLLQMDPIEF 346 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY L+ L D QG L R+ +R+ ++ G ++P IRIR+N L+P+ Y I + G Sbjct: 347 EFGYGLIPLADANQGGDLLDRVVMIRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGA 406 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ D MA+ + E I G++ +PA+G+P W+ + +A GY V+D Sbjct: 407 VVAKGEVLLDHYMAMSTGEQDDSIVGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPP 466 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +VI+TH+ ++++++ +L ++ QL + L + P L E++ L + KV R LL Sbjct: 467 TVISTHLTEVLKAHAYELLGREETKQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLL 526 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNE 484 E +S+R++ I L +TKD ++ VR AL R IT EL V TL Sbjct: 527 REQLSIRNLPVIFEALADYGPLTKDMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAA 586 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E + + + Q + G + L P + +++ G+ V+L P +R Sbjct: 587 VEKKIADAIGQNENGSFLALA-----PADSQAILQNTAKEVQKVAELGRQAVILCSPAVR 641 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + P + V+SYNE+ ++E++ +G + Sbjct: 642 MHMRQLIERHLPYVPVVSYNELEPDVEVQSVGVV 675 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 206/561 (36%), Positives = 330/561 (58%), Gaps = 9/561 (1%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER+SEV+ARFTLDAMPGKQMAIDADLN G I AQA+ RR+ + E++F+GAMDGA+ Sbjct: 122 KGSERVSEVTARFTLDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGAT 181 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA+AG++I +N+IGG +G+ K L A AF +Y ++TIGDGLV+QIPSL++S Sbjct: 182 KYVKGDAVAGLIITVVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISL 241 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A I+VT+VS DI + QL + P VLY G + L +V +P + F + A+ F Sbjct: 242 ATGIVVTKVSKEADIGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIF 301 Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKA 259 G + K+ A EE++ + E + + ++ ++ I L GY ++ L D Sbjct: 302 CGRVIDKRVKIASIEEEA--STEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVN 359 Query: 260 QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLM 319 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI E +I D M Sbjct: 360 QGGDLLDRVVLIRRQIALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYM 419 Query: 320 ALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRS 379 A+ EI G+ +P++ +P WI +Q+ +A + GY V+D S+IATH+ +++R Sbjct: 420 AMNPGYVEEEITGIPTFEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRG 479 Query: 380 YIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 ++ +L D+ L ++ L +L L ++ KV + LL EG+S+RD+VTI Sbjct: 480 HLDELLTRQDVQNLITNITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIF 539 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELT-VYTLNNELENLLTNVVNQAQ 497 L + T+D +L VR +L+R+I++ + E+T V TL+ ++E + N V Q + Sbjct: 540 ETLADYAPTTRDTDVLTEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTE 599 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 QG + +DP ++ E+++ GK+P+++ P +R + + + Sbjct: 600 QGAFLA-----IDPEKTQSIMKSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFND 654 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L V+SYNE+ +EL+ +G + Sbjct: 655 LIVISYNEIESNVELQSVGMV 675 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 213/582 (36%), Positives = 333/582 (57%), Gaps = 15/582 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGAER++EV+ARFTLDAMPGKQMAIDADLNAG+I++ +A+ RR +V Sbjct: 120 FLILVIIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFV+GDAIAG++I AIN++GG+ IG+ + + A Y L+T+GD Sbjct: 180 READFYGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIP+LLLSTA IIVTR + D+ D+ + + LY +G++F LAVVPG+P Sbjct: 240 GLVAQIPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRT---------ITETSEQQVSWET 237 +PF L + + + + ++ AE E + + Sbjct: 300 TIPFALLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLP 359 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 + ++P+ + +GY L+ LVD +QG + +RI +R+ ++ G+++P IRIR+N +LKP+ Sbjct: 360 LLTVDPMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPT 419 Query: 298 QYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALN 357 +Y I + G + ++ D +A+ + + G+ +PA+G+P WI + +A Sbjct: 420 EYVIRVKGAEVGRGELLPDHYLAMSTGGEDLLV-GIPTKEPAFGLPALWISPEIRDQAEG 478 Query: 358 MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQL 417 +GY V+D SV+ATH++++++ Y DL ++ +L + ++ T P + +DL L+ + + Sbjct: 479 LGYTVVDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLLDVLSLADV 538 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQEL 476 KV + L+ E VS+RD+VT+ L TK L VR AL R IT L Sbjct: 539 QKVLQGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVL 598 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 VYTL+ E + + G + + + P + + + E M G PV Sbjct: 599 GVYTLSPRWEQRIKECIK----GDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPV 654 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LL P +R ++ R P L V+SYNE+ +L+ +G + Sbjct: 655 LLTHPDVRLVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 206/562 (36%), Positives = 326/562 (58%), Gaps = 9/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAER+SEV+ARFTLDAMPGKQM+IDADLNAG+I + +A+ RR+ VA EADFYGAMDGA Sbjct: 121 TKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGAMDGA 180 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIAG++I+ IN+I G+ IG+ + +S A + ++T+GDG+V+QIP+LL+S Sbjct: 181 SKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPALLIS 240 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA I+VTR + G++ HD+ QL A P +LY A + +L + + L + LL Sbjct: 241 TATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLAGLLA 300 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 F + +SK E EE + + S + I+PI GY L+ L D Sbjct: 301 FGAYTLSK--SGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADA 358 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L RI +R+ ++ G+++P +RIR+N L+P++Y + I G + + ++ D Sbjct: 359 NQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHY 418 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ + I+G++ +P++G+P WI A K +A +GY V+D ASV++TH+ + ++ Sbjct: 419 LAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIK 478 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L + QL + L + P L E++ L+ + KV LL E VS+R++VTI Sbjct: 479 QHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTI 538 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQA 496 L +T D LL R AL + IT F ++ E L V T + +E + + V Q Sbjct: 539 FETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQT 598 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 + G + L +P++ ++ + EQ+ + +LL P +R + + + P Sbjct: 599 EHGNYLSL-----EPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFP 653 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLSYNE+ +E++ +G + Sbjct: 654 DLPVLSYNELEANVEVQSIGVV 675 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 203/577 (35%), Positives = 323/577 (55%), Gaps = 9/577 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L +N V+T G RI+EV+ARFTLDAMPGKQMAI+ADLNAGLI++ +A RRK++ Sbjct: 130 FMILFILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIR 189 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA KFV GD AGM I IN+IGG+ +GI + ++ A Y L+T+GD Sbjct: 190 KEADFYGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGD 249 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ IPS+++STAA IIV+R + + + QL + + +G++ + A+VPG+P Sbjct: 250 GLVSTIPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLP 309 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETS--EQQVSWETIPLIEPI 244 +PFL+FSA L F + + + + + + + ++ + Sbjct: 310 TVPFLIFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDAL 369 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L +GY L+ LVD+ Q L RIR +R+ + GV++P + +R+N +LKP QYA+ I Sbjct: 370 ELEVGYGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIK 429 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 G + A+I D L+A+ I G++ +PA+ +P WI +QK +A+ GY V+D Sbjct: 430 GNQVASAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVD 489 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 ++VIATH+ ++ R ++ + ++ L + LS AP+ E+L L+ + KV + Sbjct: 490 PSTVIATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQN 549 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 L+ E VS+RD++++ L K+ L VR L RSI P + + L + TL+ Sbjct: 550 LVRENVSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLD 609 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +E L + + Q + G + L+ P+ + ++ E PV+L P Sbjct: 610 ANVERTLQDSIRQTEGGAYLALN-----PSTAQRLIQSVNTQVENAVGTDGQPVVLTQPG 664 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 RP LA+ F P + VLS E+P ++ L+ +G ++ Sbjct: 665 TRPHLAQLLMRFLPNIPVLSQAEIPPDIRLQAVGNVV 701 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 200/562 (35%), Positives = 319/562 (56%), Gaps = 9/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GAER++EV+ARFTLDAMPGKQ+AIDADLNAGLI +A+A+ RR+ + EADFYGAMDGA Sbjct: 125 TRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFYGAMDGA 184 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIA M+I+AIN++ G+ IG+ + S A Y ++++GDGLV+QIP+LLLS Sbjct: 185 SKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQIPALLLS 244 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA ++V+R + + ++ DV Q+ LY +G + +L ++ + LP + + Sbjct: 245 TATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIPIAGGAT 304 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 R + + ++ E R +++ + + +EP+ GY L+ LVD Sbjct: 305 LMARRAERSRALQQ--KREEEEKARQKRSEAKKPENVYQLITVEPVEFEFGYGLIPLVDA 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG +R+ +R+ ++ GV+LP +R+R+N LKP+QY I + G++ +I Sbjct: 363 RQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEILMGHW 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +AL E+ G+ DP +G+P W+ K +A GY V+D SV+ATH+ +++R Sbjct: 423 LALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLTEVLR 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L + +L L T P + ED+ L+ + +V LL EGV +RD+VTI Sbjct: 483 RHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRDLVTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L + T+D L VR L R I +++ + LTV T + LE + V Sbjct: 543 LEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQAV--V 600 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 +QGG + S+ ++P + ++ +++ GK PVLLV P++R L+R R + P Sbjct: 601 EQGGAL---SIGLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVP 657 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLS+ E+ + + G + Sbjct: 658 DLPVLSFAELDPSISIHSGGVV 679 >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 656 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 199/574 (34%), Positives = 332/574 (57%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INFIV+TKGA RI+EV+ARFTLD MPGKQMAIDADLN+GLI + +A+ RR ++ Sbjct: 139 FSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEARRRRSEIE 198 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E++F+GAMDGASKFVRGDAIAG++I IN++ G IG+ + +LSA + Q Y ++T+GD Sbjct: 199 QESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGD 258 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIP+L++S A +VTR S + ++A V Q+ A P V+ + ++ +LA++PGMP Sbjct: 259 GLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMP 318 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F L + +G W + ++ A + +E +E + E+ ++ + L Sbjct: 319 TVAFGLLAIAMGSWSWYLFRR--AEQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRL 376 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L++LVD+ Q L +IR +R+ + G ++P I I++N +LKP +Y+ + G+ Sbjct: 377 DVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGV 436 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + ++ +A+ + G+I G+ +PA+G+P WI + ++ +A +GY V+D++ Sbjct: 437 EVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDAS 496 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ATH+ ++V ++ ++ ++ L + +S P+L E+L ++ + KV + LL Sbjct: 497 TVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQKVLQGLL 556 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNE 484 E VS+RD+ TI L + K L VR +L RSI ++ LT L + Sbjct: 557 RERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPD 616 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 ENL+ + G + L P Q + + E+ PVL+ ++R Sbjct: 617 AENLVAEAIVSGDYGSYLSL-----SPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRVR 671 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P + + P L VLS NE+P + + +G++ Sbjct: 672 PFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 195/561 (34%), Positives = 316/561 (56%), Gaps = 9/561 (1%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER++EV+ARFTLDAM GKQMAID+DLN G I +A RRK + E F+G+MDGA+ Sbjct: 124 KGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGSMDGAT 183 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA AG++I INLIGG+ +G+ L+ + A +Y ++TIGDGL +QIPSLL+S Sbjct: 184 KYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPSLLISL 243 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A ++VT+ S G++ ++ QL + VL + +L V +P F+ L Sbjct: 244 ATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLGMALII 303 Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKA 259 G ++S A E + T + + ++ ++PI L GY ++ L D Sbjct: 304 YGRKLS--AKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLADVN 361 Query: 260 QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLM 319 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI+ E +I D M Sbjct: 362 QGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFDHYM 421 Query: 320 ALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRS 379 A+ EI G+ +P++ +P WI +Q+ +A ++GY V+D S+IATH+ +++R Sbjct: 422 AMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRQ 481 Query: 380 YIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 +I +L D+ L N + L E+L + ++ KV + LL EG+S+RD+VTI Sbjct: 482 HIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLVTIF 541 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQEL-TVYTLNNELENLLTNVVNQAQ 497 L + VT+D +L VR AL+R+I+ + E+ V T++ +E + N V + Sbjct: 542 ETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVKNTE 601 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 QG + L DP + + ++++ GK+P+++ P +R A+ + Sbjct: 602 QGSYLSL-----DPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKD 656 Query: 558 LHVLSYNEVPDELELKIMGAL 578 + V+SYNEV +EL+ +G + Sbjct: 657 IIVISYNEVESNVELQSVGMV 677 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 223/573 (38%), Positives = 333/573 (58%), Gaps = 9/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ +NFIV+TKG+ER+SEV ARFTLDAMPGKQM+IDADLNAG+I + QA+ RR+ + Sbjct: 118 FAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQKIQ 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYGAMDGASKFV+GDAIA ++IL IN+IGG G+ + A Y L+TIGD Sbjct: 178 AEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+STA ++VTR + ++ D+ QL +P LY G+ VLA+ G+P Sbjct: 238 GLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-GLP 296 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP L+ + +L G M K A EE + T E S++ + + ++ + L Sbjct: 297 LLPLLIVAIVLVALGRVMDKGSQKAVVEESA--AARETALEESKKPENVLNLLNVDNMEL 354 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY L+ALVD QG L RI +R+ ++ G ++P IR+R+N L+P+QY+I I G Sbjct: 355 ELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRGA 414 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + +I AD +A+ S I G+ +PA+G+ WI A + + G V+D+ Sbjct: 415 EVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDAP 474 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +V+ATH+ ++++S ++ + D+ L + AP +D L+ L KV LL Sbjct: 475 TVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEHLDLGHLQKVLANLLR 534 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNEL 485 E VS+RD+VTI L ++ TKD L VR +L R I P + ++L V TL +L Sbjct: 535 ERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEPKL 594 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+ + + + G + L DP +L + ++ + E+M G +PVL+ P +R Sbjct: 595 EQLILDSIQPSDFGSYMTL-----DPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRI 649 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R P L VLSYNE+ ++++ +G + Sbjct: 650 NLKRVTERQLPQLMVLSYNELVHGVQVQAVGMV 682 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 208/573 (36%), Positives = 341/573 (59%), Gaps = 14/573 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+T+GAER+SEVSARFTLDAMPGKQMAIDADLNAGLI + +A+ RRK++ Sbjct: 109 FLIIAIVQFIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIA ++I+ IN++ G+ IG+ + + A Y+++T+GD Sbjct: 169 QEAKFYGAMDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STA +IVTR + ++ DV QL P +L A G++F L +VP +P Sbjct: 229 GLVSQIPALLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP +L +L + G+ +++ E E++ I + + + ++PI L Sbjct: 289 KLPLILIGSLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKK----VYELLQVDPIEL 344 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L L RI +R+ I+ G+++P IR+R+N +LKP++Y I I G Sbjct: 345 EFGYELIPLAS----GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGN 400 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + D+ MA+ + E +I G++ +PA+G+P W+ +++KA GY V+D Sbjct: 401 EIARGKVYVDRYMAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVP 460 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVIATH+ +++ + +L ++ L + + +T P L E+L L ++ KV LL Sbjct: 461 SVIATHLTHVIKQHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLL 520 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 EG+S+RD+VTI L + + +D +L VR AL R+I++ + ++ V TL+ + Sbjct: 521 REGLSIRDLVTILETLADYAPIIRDTDVLTEYVRQALARTISNKYAPYGKIEVITLDPSV 580 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+++ + Q + G + L +P+ + ++ ++ +++ G PV+L P R Sbjct: 581 EQLISSSITQTEHGSYLAL-----EPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRF 635 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + +P + VLSYNE+ +E+ + + Sbjct: 636 YLRKLVEQISPDIAVLSYNELLPNIEVASVETV 668 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 239/594 (40%), Positives = 359/594 (60%), Gaps = 36/594 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEVSARFTLDAMPGKQMAIDADLNAG+I+Q +A+TRR+DVASEADFYGAMDGA Sbjct: 153 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEADFYGAMDGA 212 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGD++AG++IL IN+ GG+ +G+ ++ L A ++YVL+TIGDGLVAQIPSLLLS Sbjct: 213 SKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVAQIPSLLLS 272 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AAAI+VTRV+ + D+ V +Q+ SP L A I+F++ +PGMPH PF+ + + G Sbjct: 273 VAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPFITLAIICG 332 Query: 199 FTGWRMSKQPLAAEA--------------------------------EEKSLETLTRTIT 226 + + + AE E +S Sbjct: 333 ILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSARQGNPPPQ 392 Query: 227 ETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEI 286 + +VSW+ + ++ + L +GY+L+ LVDK QG L RI+GVR+ +S G L+P + Sbjct: 393 SSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQDLGFLIPAV 452 Query: 287 RIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTW 346 IR+N L PS Y I + G+ E ++ DK +A+ + +G + G + DPA+G+ W Sbjct: 453 HIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDPAFGLEAIW 512 Query: 347 IQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAE 406 I AQ+ +A +GY V+D ++V+ATH+N+I++++ +L ++++ + + L +P+L E Sbjct: 513 IDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLGEKSPKLVE 572 Query: 407 DL-SAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 +L L+ +QLLK + LL E V +RD+ TIA L A + D L + R++L R Sbjct: 573 ELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSIARVSLARQ 632 Query: 466 ITHPFV-RKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQV 524 I V + L V TL+ LE LL V QAQ+ G D ++P + + ++ + Sbjct: 633 IVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGAS--DGAFIEPQLAERLNKSLVET 690 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ + AG+ VLLV +RP++A++ R +HV++YNEVPD ++ I + Sbjct: 691 AKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 203/577 (35%), Positives = 327/577 (56%), Gaps = 11/577 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + ++ + +VVT G+ R+SEVSARFTLDAMPGKQMAID+DLN+G I + QA+ RRKD+ Sbjct: 120 FVIIMIVQLVVVTNGSGRVSEVSARFTLDAMPGKQMAIDSDLNSGAITEEQARQRRKDLQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIAG++I+ +NLIGG I K +LS A Q+ + IGD Sbjct: 180 READFYGSMDGASKFVKGDAIAGIIIVLVNLIGGTIIFTAKGDLSITDALSQFGKLAIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ +PSLL+S A +IVTR DN D+ + L +P + I+ VLA+VPG P Sbjct: 240 GLVSSVPSLLISLATGVIVTRSEDNSTFGTDIASDALRNPQLFKVVGVILLVLALVPGFP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP--LIEPI 244 +PF++ S + F + KQ +E+ E T + E+Q + + +EP+ Sbjct: 300 KIPFIVLSLAM-FAANVLVKQKEEQRIKERIKEEQTLALQRKKEEQEEDDDVASFQVEPL 358 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 S+ +GY L+ LVD N L RI +R+ + G+L+ +RIR+N L + Y+I I Sbjct: 359 SIEIGYGLIPLVDSTIDNSLMNRISAIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIR 418 Query: 305 GIKADEADIPADKLMALP-SSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + DI DK M + S + G+ +PA+ + WI K A G+ VI Sbjct: 419 GNEVGHGDIYPDKYMIISQSDDGSFPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVI 478 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 + +VIATH+ +I+ ++ P+L ++ +L + + + ++L + ++ KV + Sbjct: 479 EPLTVIATHLKEIIHAHAPELLGRQEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQ 538 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 LL E V + D+ TI L TVTKD +L VR LRR+I + + + + + V T+ Sbjct: 539 NLLEENVPINDLSTILETLADYGTVTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTI 598 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + ++E +++ + + G ++ P+ +N+ + + + +QM A + V+L P Sbjct: 599 HPKVEEMVSQSIQKTATGSYPVM-----KPDSVNKILTAIGDISQQMAAQNMNYVILTSP 653 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++R + P + VLS NE+P+E+ ++ +G + Sbjct: 654 KIRLAFRKLIAFNFPDVAVLSLNEIPNEIAIESIGNI 690 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 209/571 (36%), Positives = 334/571 (58%), Gaps = 10/571 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG+ RI+EV+ARFTLDA+PGKQMAIDADLNAGLI++ +A+ RR+++A Sbjct: 128 FIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIA 187 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I A+N+IGG IG+F++ +SA A Q +VL++IGD Sbjct: 188 READFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGD 247 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STAA IIV+R S ++A + + QL L + +L +VPG+P Sbjct: 248 GLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLP 307 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +PF L + G+ Q E E++ + + +++P+ L Sbjct: 308 LVPFWLLAGTTLLLGY----QRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLEL 363 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD Q L RI+ +RQ ++ G+++P +RIR+N L ++Y I I G Sbjct: 364 EIGYGLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGN 423 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 E ++ +AL G++ DP +G+P W+ A MG V+++ Sbjct: 424 PVAEGEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAP 483 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +VI TH+ +++R L + ++ +L +++ T P L E+L L+ + KV + LL Sbjct: 484 AVITTHLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLL 543 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E + +RD+V+I L +T TK+ +L VR AL +IT F+ + + L+ Sbjct: 544 RERIPIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPI 603 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L Q + G++ ++ ++P +F ++ ++ + G+ PVLL P LR Sbjct: 604 LERHLL----QQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLR 659 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIM 575 P+L + P L+VLSYN++ + ++++ Sbjct: 660 PVLYNFLAPSIPDLNVLSYNDLLPDTRVEVV 690 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 213/569 (37%), Positives = 338/569 (59%), Gaps = 8/569 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+TINFIVVTKG ERISEV ARFTLDAMPGKQMAIDADLNAGLI++ +A+ RR+ +A Sbjct: 126 FVILVTINFIVVTKGTERISEVGARFTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIA 185 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIAG++I IN+IGG+ IG+ ++ + A + L+T+GD Sbjct: 186 KEADFYGAMDGASKFIRGDAIAGIIITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGD 245 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+ STAA ++VTR ++ ++ +QL + P LY G +FV+ VPGMP Sbjct: 246 GLVSQIPSLITSTAAGLMVTRAVSETNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMP 305 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +PF + + ++ T + M + E++ E + E + + I E I+ Sbjct: 306 FIPFTILAGMIALTAYMMQLEMKRETIEKEEEEVKEILQQQVEESEEEY--ITQPETITF 363 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD+ +G L +RI+ +R+ +S G+++P I I++N LK +Y I + G+ Sbjct: 364 EIGYGLIPLVDEEKGGELLKRIKSLRKQLSKELGLMVPLIHIKDNLELKSGEYRILLKGV 423 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + I K++A+ + +T G+++GV+ +P +G+ WI +QK KA +G+ V+D Sbjct: 424 EVARYQIEPGKMLAIDTGQTNGKLEGVETTEPTFGLKAYWIDESQKDKARMLGFTVVDIP 483 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +VI TH+++I++ ++ + +L ++L P + E + + Y+ L +V + LL Sbjct: 484 TVIITHLSEIIKQNAHEILGRSETKELVDKLGQKYPIVKEIVPEQVPYAILHRVLQNLLR 543 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 E + ++D++TI L + T T+D +L VR +L R IT + + L TL+ E Sbjct: 544 EHIPIKDLLTIIESLSDNITKTEDTDILTELVRESLARLITSIYAKDGVLYALTLDPASE 603 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 L + + + P+DP L F + + E+ + PVLL P +R Sbjct: 604 EKLYAKIKEYNG------NLPPIDPAKLQSFIMQISKNMEKFVIEQRTPVLLTSPNVRRY 657 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIM 575 + + + + VLSYNEV + +LKI+ Sbjct: 658 VYKIIEPYMSNVAVLSYNEVDPKTKLKII 686 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 195/567 (34%), Positives = 342/567 (60%), Gaps = 8/567 (1%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKG+ RI+EV+ARFTLDAMPGKQMAIDADLN GLI + +A+ +R+ + EAD+YG Sbjct: 132 NFMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDAIAG++I AIN++GG+ IG+F++++ A + ++ ++TIGDGLV+QIP Sbjct: 192 AMDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIP 251 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 SL++ST+A +IV+R + D++ + QL +S VL A I+ A+VPG+P + F+ Sbjct: 252 SLIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISI 311 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 +AL+ + + + E +EK T + + E++ + ++ + L +G+ L+ Sbjct: 312 AALMFYLVYISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKN-LLEMDLMELEIGFGLI 370 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD QG L RI+ +R+ I+ G ++P +RIR+N +L + Y++ + ++ I Sbjct: 371 PLVDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTI 430 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 +K + + +IDG+ +PA+G+ W+ K A GY ++D ++VIATH+ Sbjct: 431 FPEKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHL 490 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 +I++ +L + +L ++L P+L +D+ + L+ + +V ++LL E VS+R Sbjct: 491 TEIIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIR 550 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTN 491 ++ T+ VL K+ L VRL L+R IT L V+TL +++E +L + Sbjct: 551 NLQTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLAS 610 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + G +++ +DP + + S + + E+ + G P++++ P +R + R+ Sbjct: 611 SLQNTDDGQEIV-----IDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFV 665 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 F P ++++S+NE+ + + ++ +G L Sbjct: 666 EKFVPNVNIMSHNEISESVRIESLGML 692 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 208/560 (37%), Positives = 328/560 (58%), Gaps = 17/560 (3%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GA RI+EV+ARFTLDA+PGKQMAIDADLN+G I + +A+ RRK+++ E++FYGAMDGA Sbjct: 143 TRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMDGA 202 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDA+A ++IL +N++GG+ IG+ L A Y L+TIG+GLVAQ+P+L++S Sbjct: 203 SKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALIVS 262 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA I+VTR D+ ++R Q+L P L A+GI+F+L+V+PG+PH F L +++ G Sbjct: 263 VAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLLASVTG 322 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 +R + E+K L + ET ++ + L++GY LV LV+ Sbjct: 323 LMAYRRT------TLEKKKARELQAEEKTVPPPAENVETYLSLDLLELNVGYGLVDLVEG 376 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 G+ LT RIRG+R+ ++ G+++P I IR+N +LKP +Y + + G ++ D L Sbjct: 377 KAGSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSL 436 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ ++G+ +P +G+P TWI + + G+ V+D +V++TH+ +++R Sbjct: 437 LAMNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIR 496 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 S+ +L ++ +L + L PRL EDL ++ L+ V ALL+E VS+RD+ TI Sbjct: 497 SHAAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTI 556 Query: 438 ATVLVA---SSTVTKDHILLAADVRLALRRSITHPFVRK--QELTVYTLNNELENLLTNV 492 + + +KD LA VR AL RSI +P++ + L V T + E + Sbjct: 557 LEAVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQ 616 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 +Q G ++L +P + + S + QV E + G PVLLV Q R + R+ Sbjct: 617 ASQTPPGSPLVL-----EPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLE 671 Query: 553 LFAPGLHVLSYNEVPDELEL 572 + L VLS EVP ++ + Sbjct: 672 RYFSSLPVLSPMEVPKDVPI 691 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 219/569 (38%), Positives = 324/569 (56%), Gaps = 15/569 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA RI+EV ARF LDAMPGKQMAIDADLNAGLI + +A+ RR + EADFYG Sbjct: 137 NFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEKAKKRRIKITQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ IN+ GG+ IG+ ++++ + A + Y L+TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVEVYTLLTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA +IVTRVS N ++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLGVLGLVPGMPNIIFLVF 316 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + LL W + ++ E + + I + + SW + L +PI + +GYKL Sbjct: 317 TVLLFILSWWLYEKKYDLENDFIKSNKKYKFI-HDAISEASWNDVELEDPIRIEIGYKLT 375 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 + D + L RIR VR+ ++ G L P +RI+ N L + Y IFI G++ + Sbjct: 376 PMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNSYRIFIKGVEVGQGKC 435 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 + MA+ S + + +P +G+ WI K KA GY VI+S+ V++TH+ Sbjct: 436 FYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKKGYSVIESSVVLSTHL 495 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 N ++ ++I DLF + QL R++ P+L EDL +N + K+ R LL E V +R Sbjct: 496 NFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIFHKILRNLLLEHVPIR 555 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNELENLLTN 491 D+ TI L + KD L + VR+ALR+ I F + + + L LE LL N Sbjct: 556 DMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNIIEIIGLEPNLERLLLN 615 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + ++PN+ + ++ G VLLV LR L+++ Sbjct: 616 SLKSGTD---------TIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRYFLSKFL 666 Query: 552 RLFAPGLHVLSYNEVPDELEL---KIMGA 577 R P L VLS E+ D E+ I+G Sbjct: 667 RQNFPELTVLSQFEIIDVKEIKMTNIIGT 695 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 201/561 (35%), Positives = 334/561 (59%), Gaps = 12/561 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAERISEV+ARFTLDA+PGKQM+IDADLNAGLI + +A+ RR+++ EA+FY AMDGA Sbjct: 126 TKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAMDGA 185 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKF+RGDAIA ++IL ++L+GG+ IGI + +A + Y +++IG+GL +Q+P+LLLS Sbjct: 186 SKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPALLLS 245 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TAA ++ T++S ++ + +L P L + G++ + ++PG+P LPFL SA+L Sbjct: 246 TAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSAILA 305 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 + + Q E E K LE L + T+ ++ E IP EPI+L +GY L+ LVD+ Sbjct: 306 GAYYLV--QQSLKERELKELEKLAQEKTKEK-EEEGEELIPQPEPITLEIGYALIPLVDE 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 +QG + ++I+ +R+ I+ GV++P I IR+N RLKP++Y I I GI+ D ++ Sbjct: 363 SQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHY 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ G I+G++ DPA+ + WI +K +A +GY V+D+ +V+ TH++++++ Sbjct: 423 LAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIK 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L +++ +L LS P++ ++ + + S + +V + LL EG+ + D++TI Sbjct: 483 RNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQ 497 L TKD LL VR AL + IT ++ L L+ ++E L + + + Sbjct: 543 LETLADYIEQTKDPDLLTEYVRQALSKRITRMYLTNGTLYAIALSPKVEAKLVKFLKENR 602 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 + + +LN + + G PVLL ++R + + + Sbjct: 603 EDEFIDY--------VLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSE 654 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L VLSYNE+ ++ +KI+G + Sbjct: 655 LAVLSYNELEKQVNIKIIGIV 675 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 202/562 (35%), Positives = 326/562 (58%), Gaps = 10/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPGKQMAIDADLNAG+I+ +AQ RR++VA +ADF+GAMDGA Sbjct: 131 TKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQADFFGAMDGA 190 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I +N++GG IG+ +Y + + + + ++IGDGLV+Q+P+ L S Sbjct: 191 SKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVSQVPAFLTS 250 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA ++ TR S ++ QL ++P L A G + VL V+ +P +P L A G Sbjct: 251 LAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPLLAIGAGCG 309 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 +S++ + EA+ + T+ +E+++ E ++P+ + +G L+ L + Sbjct: 310 GLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERI--EDFLSVDPMEIEIGAGLIRLANP 367 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L RI VRQ +++ G++LP++R+++ RL QY I I+G ++ K Sbjct: 368 KQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGEVLPGKF 427 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ S T G++ G++ DPA+ P WI + + +A MGY ++ +V+ATH+ ++VR Sbjct: 428 LAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATHLQEVVR 487 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L D L + L T+P + ++L A + S + +V + LL E VS+R++ TI Sbjct: 488 RHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSIRNLSTI 547 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L +T TKD + L VR L R+I+ + + + V TL+ LE+ + V + Sbjct: 548 LETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIAAGVEHS 607 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 ++G V L P ++ + + ++ GK P++LV PQ+R L P Sbjct: 608 ERGLFVRL-----QPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNLP 662 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 LHVLS+NEV + ++ I+G + Sbjct: 663 RLHVLSFNEVTRDTKVDILGVV 684 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 623 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 201/568 (35%), Positives = 324/568 (57%), Gaps = 9/568 (1%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + F+V+T G+ R+SEV+ARFTLDAMPGKQM+IDADLNAG+I+ A+ RRK++ EADFY Sbjct: 121 VQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEADFY 180 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+MDGA+KFV+GDAIAG+++ AIN+IGG+ IG N++ A Q YV +TIGDGLV+QI Sbjct: 181 GSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLVSQI 240 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 P+LL+ST+A IIVTR S + + V QL A P + ++ VL ++PG+P F Sbjct: 241 PALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPAFFS 300 Query: 193 FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 G+ + ++ E+ E + +E + I +E I + +GY L Sbjct: 301 LGIGAIAAGYFLGREKK-DTLEDLEFEKPDMVNPDKNEVEDVTNLI-NVESIEVEIGYGL 358 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 ++L D++ G L QRI +R+ + G+++ IRIR+N +L P+QY I I G + Sbjct: 359 ISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGGYE 418 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 I + ++ + I G++ +P +G+ WI++ + A GY V+DS++++ TH Sbjct: 419 IMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILITH 478 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSL 431 + I++S +L ++ + + + ++L + ++ KV + LL E V++ Sbjct: 479 LLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKVNI 538 Query: 432 RDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLT 490 +D VTI L S TKD LL VR+AL RSI + V + + V TL+ E E L++ Sbjct: 539 KDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEELVS 598 Query: 491 NVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARY 550 N + ++ G VDP N+ ++ +V + PV++V P++R + Sbjct: 599 NNLQRSVNGTY-----PAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKL 653 Query: 551 ARLFAPGLHVLSYNEVPDELELKIMGAL 578 + P L VLS NE+P+++++K G + Sbjct: 654 VEIVYPNLTVLSLNEIPNDIKIKAEGVV 681 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 194/563 (34%), Positives = 330/563 (58%), Gaps = 10/563 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RI EV+ARFTLDAMPGKQM+IDADLNAGLI + +A+ RR+ ++ EA+FYGAMDGA Sbjct: 138 TKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSREAEFYGAMDGA 197 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 KFV GDA+AG++I+ IN+IGG+ +G+ + +S A Q Y L+T+GDGLV+QIPS +++ Sbjct: 198 GKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDGLVSQIPSFIIA 256 Query: 139 TAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALL 197 TA+A+IVT+ S ++ DV QL + P+ + A GI+ + ++VPG+P +PFL+ + Sbjct: 257 TASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPKIPFLVLAGFF 316 Query: 198 GFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 + + + E E +L T + +++ S E + ++ + L +GYKLV LVD Sbjct: 317 WMMFFVLRRSSKETELAE-ALVKETEGMAREPKKEESVEGMLRVDRMELEVGYKLVPLVD 375 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADK 317 + + +RI +R I+ G+++P IR+R+N +L+ ++Y + I G + ++ Sbjct: 376 PNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQEIAHGELLTGS 435 Query: 318 LMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIV 377 +A+ S +++G++ DPAYG+P WI A K A +GY V+D ASV+ TH+ +I+ Sbjct: 436 YLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPASVMITHLTEII 495 Query: 378 RSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVT 436 +++ ++ +D+ +L + P + E+L ++ + ++ + LL E V +RD+ + Sbjct: 496 KTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLKEQVPIRDLSS 555 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQ 495 I + + TKD L VR L R+I + + ++ V + + LE + N +++ Sbjct: 556 ILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHLEQTIANAIHK 615 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 ++G + L DPNM ++ + ++ +G + VLL +R + R Sbjct: 616 TEKGNLLAL-----DPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRLIENAL 670 Query: 556 PGLHVLSYNEVPDELELKIMGAL 578 P L VLSY E+ + + +G + Sbjct: 671 PQLAVLSYKEISPGVMIDSVGVV 693 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 190/591 (32%), Positives = 296/591 (50%), Gaps = 24/591 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ +NFIV++KG+ER++EV+ARFTLDAMPGKQM+IDADL AG I+Q Q + +R+D+ Sbjct: 119 FIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRRDLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIA ++I +N++GG+ IG+ + +SA A Q+Y L+TIGD Sbjct: 179 RESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD---IAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV IP++L+ST A IIVTRV+ + + D+ +QL A P + A G++ VL +VP Sbjct: 239 GLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLGLVP 298 Query: 184 GMPHLPFLLFSALLGFTGW-RMSKQPLAAEAEEKSLETLTRTITETSEQQVSWET----- 237 G+P +PF L G W + KQ A EAE+ T T + + E Sbjct: 299 GLPKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALNPDS 358 Query: 238 ---IPLIEPISLSLGYKLVALVDKAQ--GNPLTQRIRGVRQVISDGNGVLLPEIRIRENF 292 IP++ PI L + LV VD Q G L + I +R + GV P +R R N Sbjct: 359 ELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRARGNG 418 Query: 293 RLKPSQYAIFINGIKADEADIPADKLMALP--SSETYGEIDGVQGNDPAYGMPVTWIQAA 350 L P Y I IN + ++ I G + +PA P W+ Sbjct: 419 SLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWVPEQ 478 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LS 409 + G D I H ++R + + + +L P + ++ + Sbjct: 479 YRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKEVVP 538 Query: 410 AALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP 469 +N +L + + L+ E +S+RD+ I L V D+++L VR A RR I+H Sbjct: 539 KVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYISHK 598 Query: 470 FVRK-QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQM 528 + R L VY L+ +E+ + V + G + L +P + + + + Sbjct: 599 YARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLAL-----EPELAQEIVQAVRSECGHL 653 Query: 529 KAAGKDPVLLVPPQLRPLLARYAR-LFAPGLHVLSYNEVPDELELKIMGAL 578 + + PV+L +R + + F P VLSY E+ EL ++ + + Sbjct: 654 PPSAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARI 704 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 200/600 (33%), Positives = 314/600 (52%), Gaps = 33/600 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L ++ + FIV+TKGAER+SEV+ARF LDAMPGKQMAIDADL++G+I + QA+ RR+ + Sbjct: 112 YLIIVLMQFIVITKGAERVSEVAARFKLDAMPGKQMAIDADLSSGMITEQQARERREKIQ 171 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+DFYG+MDGA+K V+GD + ++ AINL+GG IGI + Y + T+GD Sbjct: 172 RESDFYGSMDGATKIVKGDGVMSLITTAINLVGGSIIGIVQSGQPVATVLSTYSIATVGD 231 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIPSLL+S + +IVTR G + DV Q P + M VL ++PGMP Sbjct: 232 GLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVSKQFTQQPRSMMITGIAMGVLMLIPGMP 291 Query: 187 HLPFLLFSALLGFTGWRMSKQ----PLAAEAEEKSLETLTRTITETSEQQVSWETIP--- 239 L L + G+ + K+ P A E + L + E Q + P Sbjct: 292 ILQILPVAGGFIAAGYFLEKRIKEEPERARTEGEGLLPSMEAPPQPQEAQGEAASAPAES 351 Query: 240 ---------------LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLP 284 +EPI + GY L+ L D++ G L QRI R+ + G ++P Sbjct: 352 EEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLADESVGGRLIQRIVIFRRQYAQDIGFVVP 411 Query: 285 -EIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMP 343 IR+R++ L ++Y+I I G + + +I D ++AL + IDG++ +PAYG+P Sbjct: 412 SSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTDYVLALEPDDVEDAIDGIETIEPAYGIP 471 Query: 344 VTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPR 403 WI+ + +A GY VID SV+ +H+++ ++ + +L ++ +L L TAP Sbjct: 472 SKWIRPENRERAELYGYTVIDPLSVMLSHLSETIKRHAYELMTRQEVVRLVENLKKTAPE 531 Query: 404 LAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVT----KDHILLAADV 458 L E+ ++Y+ L KV LL EGVS++D+ TI + + T KD + V Sbjct: 532 LCEEAFPGVISYNLLQKVLTTLLREGVSIKDLETIVETMFECISETGLPVKDTDQIVEKV 591 Query: 459 RLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQ 518 R +L+R+IT + + V TL+ LE + N + + + G + L P +L Sbjct: 592 RASLKRTITRMYCEDGNMKVITLDAGLERTMVNSLARGENGLYLAL-----SPELLQSLI 646 Query: 519 STMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + + P++L +R F P + VLS+NEV ++++ +G+L Sbjct: 647 RQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFYPNVRVLSFNEVASNVQIQAIGSL 706 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 209/569 (36%), Positives = 337/569 (59%), Gaps = 17/569 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V++KG+ RI+EV+ARFTLDAMPGKQMAIDAD+NAGLIN+A+A+ RR++VA EA+FYG Sbjct: 133 NFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEFYG 192 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDA+AG++I INL+GG+ IG+ ++ +S A + L+T+GDGLV+QIP Sbjct: 193 AMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQIP 252 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA II+TR S N + +++ Q A P V + A G +F++++VPG+P +PFL+ Sbjct: 253 ALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFLIL 312 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQ--QVSWETIPLIEPISLSLGYK 251 S LG +G+ + ++K LET+ +T +E + + + + +PI L +GY Sbjct: 313 SLGLGASGYYLQ-----LGQQQKGLETIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYG 367 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 L+ +V+ + L R++ VR+ I+ G +LP + I++N +L S Y I I G + Sbjct: 368 LIDMVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKG 427 Query: 312 DIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIAT 371 +I L+AL S + ++G+ +PA+G+P WI ++ +A GY V++ +VI T Sbjct: 428 EIRPRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIIT 487 Query: 372 HVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVS 430 H+ +++R ++ + + L + + P++ E+ + + + L V + LL E V Sbjct: 488 HLTELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVP 547 Query: 431 LRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNELENLL 489 +RD++ I L + L VR L R+IT ++ EL V+ L+ ELE + Sbjct: 548 IRDLMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRM 607 Query: 490 TNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 + ++Q QQG + LD +F S + ++ PVLL PQLR L R Sbjct: 608 SERMSQ-QQGWALPLDMPEW-----QRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTR 659 Query: 550 YARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + VLS E+P + ++ + + Sbjct: 660 ALRKVMTRIAVLSIAEIPPQTNIQSLAKV 688 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 199/579 (34%), Positives = 319/579 (55%), Gaps = 23/579 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+TKG ERISEV+ARFTLDAMPGKQM+IDAD+++GLIN+ +A+ RR+D+ EADFYG Sbjct: 123 QFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREADFYG 182 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDAIAG++I INL+GG+ IG+ + L+ A + + L+T+GDGLVAQIP Sbjct: 183 AMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLVAQIP 242 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +LL+ST+A +IV+R + + D+ QL + VL A GI+ VL ++ +P P L+ Sbjct: 243 ALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFPSLIL 302 Query: 194 SALLGFTGW--RMSKQPLAAEAEEKSLETLTRTITETSEQ-------------QVSWETI 238 A L F + R ++ LA E + + + +E+ + Sbjct: 303 GAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEEVSEV 362 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 + I + +GY L+ L D QG L RI VR+ ++ G+++ IRIR++ L ++ Sbjct: 363 LQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLLSSNE 422 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y I + G++ ++ D+L+A+ S E+ G++ +PA+G+ WI + K +A+ Sbjct: 423 YVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEEAIEK 482 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQL 417 GY +D+ SV ATH+++ ++ Y ++ +I L + L L + L L +L Sbjct: 483 GYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLKMHEL 542 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHIL-LAADVRLALRRSITHPF-VRKQE 475 KV LL E VS+R++ I L+ + ++I L VR +L R I E Sbjct: 543 KKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKSDDGE 602 Query: 476 LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 L V L+ +E L+ + + G ++L +P N + + E M G +P Sbjct: 603 LHVSALDPTIEKKLSESIRDSDSGRVIIL-----EPEYSNILVQRISKSLENMMMKGFNP 657 Query: 536 VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 +L+ +R AR+ F + +++Y E+P + L + Sbjct: 658 ILICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNV 696 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 195/576 (33%), Positives = 311/576 (53%), Gaps = 22/576 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+T GA R++EV+ARF LD++PGKQMAID D NAGLI +A+A+ RR+ + Sbjct: 122 FLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLITEAEARERRRRLQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGA+KFVRGDAIA ++I+ IN++GG +G+ + A + Y L+TIG+ Sbjct: 182 READFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLTTALRTYTLLTIGE 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+ST+A ++VTR + QL A P +L+ A I +L +VPG+P Sbjct: 242 GLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAAAIFILLGLVPGLP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP---LIEP 243 HL L G G+ + E E K E++ E + +EP Sbjct: 302 HLLLLSIGGATGALGYFL-------EEERKKQIKAAAPPAPPKEKRTEPENVLTYFQVEP 354 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 + + LGY LV L + QG L R+ VR+ + G+ + IRIR+N +L P+ Y + Sbjct: 355 LEIELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPPNVYLFRL 414 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 GI+A ++ +A+ +++G+ +P +G+P WI A K KA G+ V+ Sbjct: 415 RGIEAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAEAAGFTVV 473 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 + ++V+ATH+++ ++ P L + +L + + P L E+L L ++ KV + Sbjct: 474 EPSAVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLGEVQKVLQ 533 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLN 482 LL E V ++D+V+I L ++ V++D L R AL R IT + R +L+V TL+ Sbjct: 534 GLLEERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYARDNKLSVLTLH 593 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E L+ + + ++P + + + Q E G PV+L P Sbjct: 594 PRWEERLSQAKEEGK----------VLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPG 643 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R LL R P + V+SY EV ++ ++ +G + Sbjct: 644 ARLLLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 196/572 (34%), Positives = 330/572 (57%), Gaps = 7/572 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKG ERISEV+ARFTLDAMPGKQMAIDADLN+GLI++ +A+ RR +V Sbjct: 102 FLVLVIINFVVITKGTERISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVT 161 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA+KFVRG+A+AG++I AIN++GG+ IG+ + + A + L++IGD Sbjct: 162 EEADFYGAMDGATKFVRGEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGD 221 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD-NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP+L++STAA IIV+R S G +A +++ QLL P L + V+ VPG+ Sbjct: 222 GLVSQIPALMVSTAAGIIVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGL 281 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P +PF L SA + + SK+ A + E + E + + L++P+ Sbjct: 282 PIIPFWLLSAGVLLLWYLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLE 341 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L +GY L++LVD QG L +R++ +R+ +++ G+++P +RIR+N + ++Y I + G Sbjct: 342 LEIGYGLISLVDPDQGGDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRG 401 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 E + +AL + G++ DP +G+P W+ ++A MG VI+ Sbjct: 402 NPIGEGQVMPGYKLALLPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEP 461 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRAL 424 +VI+TH+ + +R L + ++ ++ +++ +AP L ++L L+ + KV + L Sbjct: 462 PAVISTHLLEELRKNAYRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRL 521 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNN 483 L E + +RD+VTI L ++ T+ +L R AL +IT F + + + ++ Sbjct: 522 LEERIPIRDLVTILETLADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDP 581 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 LE L + G + +++ + P + + + ++ + + P+LL+ P L Sbjct: 582 ALEQHLLE----TAESGGLDANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVL 637 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIM 575 R + ++ + VLSYN++ + + I+ Sbjct: 638 RATVYQFLDPMVSDITVLSYNDLTPDAPVDIV 669 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 197/562 (35%), Positives = 312/562 (55%), Gaps = 10/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPG+QMAIDADLNAG+I++ +AQ RR ++ +ADF+GAMDGA Sbjct: 135 TKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQADFFGAMDGA 194 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I IN++GG IG + +S A + Y +TIGDGLV+Q+P+ L+S Sbjct: 195 SKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVSQVPAFLIS 253 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA ++VTR S ++ + QLL+ P L A + +L V G+P +P L Sbjct: 254 LAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPLLTLCGGCL 312 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 + + KQ EA++++ ET + + ++++ E I+P+ + LG LV L Sbjct: 313 GIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGVGLVRLAAP 372 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 +G L R+ GVRQ ++ G++LP++RIR+N RL +QY I I E I D+L Sbjct: 373 DRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAENTIYPDRL 432 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ + G + G DPAY P WI+ + +A +GY +++ +SV+ATH+ ++ + Sbjct: 433 LAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLATHLQRVAK 492 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L D L + L +P + ++L + + V LL E V +R + I Sbjct: 493 KHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEVPIRQLAII 552 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L + TKD I L VR L R+I + + ++ V L+ +++ + + Sbjct: 553 LETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDRIAAGI-DT 611 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 ++G + P + + E++ A GK P++LV PQ+RP L + P Sbjct: 612 ERGPYARM-----SPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNHIP 666 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLS+NEV + ++ +G + Sbjct: 667 DLIVLSHNEVTRDTLIESVGII 688 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 182/573 (31%), Positives = 301/573 (52%), Gaps = 8/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+V+TKG+ RI+EVSARF+LD+MPGKQMAIDADL AGLI++ +A+TRRK + Sbjct: 133 FAILVVINFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLE 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGASKFVRGDA+AG++I IN+IGG+ IG+ +Y+LS A Y +TIGD Sbjct: 193 DESGFFGAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGD 252 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV Q+P+L++S AA +IVT+ G V QL P LY A G++ + ++PG P Sbjct: 253 GLVTQVPALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFP 312 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F L+ GW + +Q AE++ + + + ++ + ++ ++ + L Sbjct: 313 TIVFFALGGLMAGLGWYIGQQEERL-AEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRL 371 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G LV L+ A L +I+ +R + + G +LP +RI + L + YA+ + G+ Sbjct: 372 EMGEALVPLMSAADAA-LPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGV 430 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ + +M + S+ ++ G DP +G+ WIQ Q +A GY V+D Sbjct: 431 EVARGEVRPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPE 490 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 SVI TH+ ++V+ ++PDL Y L L +L ++ + V + LL Sbjct: 491 SVITTHLTEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGEIGGTSPAIMIQHVLQGLLG 550 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNEL 485 E VS+R++ I + + T + + VR L I + + V TL+ + Sbjct: 551 ERVSVRNLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKW 610 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 + + + +++ P + +F + + A + P +LV P R Sbjct: 611 DQEFVDSIRMNGDDKTLIM-----SPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARS 665 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + +P V+S+NEV L+ + + Sbjct: 666 FIRNMLERVSPMTQVISHNEVHRNANLRTLATI 698 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 192/592 (32%), Positives = 311/592 (52%), Gaps = 25/592 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EVSARFTLDA+PGKQMAIDA+LNAG+I++ QA RR V Sbjct: 109 FLILVVINFVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I +N+IGG IG+ + LS + Q++ L++IGD Sbjct: 169 KEADFYGAMDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+LS AA ++VTR S+N ++ H + Q+ P + A G++ ++PGMP Sbjct: 229 GLVSQIPSLVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLA------------------AEAEEKSLETLTRTITET 228 LPF +A F G + Q A + + Sbjct: 289 LLPFAGLAAFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPA 348 Query: 229 SEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRI 288 S + ++ ++ LGY L+ L + G L R+ GVR+ ++ G+++P + + Sbjct: 349 SGPTEDVRKLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAV 408 Query: 289 RENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQ 348 R+N L+P+ Y + G + ++ +A+ + + + GV ++P + + TWI Sbjct: 409 RDNLELEPNDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWID 468 Query: 349 AAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED- 407 +K A GY V+D ASV+ TH+++ +++ L ++ L + L T P L + Sbjct: 469 EPEKKTAEINGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAEL 528 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 L + + +V + LL E +S+ ++ I + ++++K+ L+ +R L Sbjct: 529 LPDLVTLGIIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFV 588 Query: 468 HPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 F VR + T++ E L V ++ + L DP + + Sbjct: 589 PEFEVRPGVVRAVTVDPRFEQWLGTKVQRSPTEVGLAL-----DPATTRHVLDELNRRIA 643 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ A G VL+V ++R L R+ P L VL++ E+P E++ G + Sbjct: 644 ELTAQGHPTVLVVSSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 206/571 (36%), Positives = 327/571 (57%), Gaps = 18/571 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKGA RI+EV ARFTLD MPGKQMAIDADLNAGLI + QA+ RR ++ EADFYG Sbjct: 137 NFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQAKKRRIEINQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ +N+IGG+ IGI ++N++ A Q Y ++TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQVYTILTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STA+ +IVTRVS + +++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLGVLGLVPGMPNIIFLIF 316 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + LL F W + + P+ E +++ + T + SW + L IS+ LG L+ Sbjct: 317 TTLLFFISWLIYRNPVIFTNFESTMKKIDNT-NFCNISDASWNDVQLEGSISIELGNLLI 375 Query: 254 ALVDK-AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 ++ ++ + L +IR VR+ + G L P + IR+N L + Y I I GI+ + Sbjct: 376 PMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGNCYCILIKGIEISKGT 435 Query: 313 IPADKLMALPSSETYG--EIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + K +A+ S G + + +DP + WI + +A GY + + ++VI+ Sbjct: 436 VQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQAKQKGYNIAEDSTVIS 495 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGV 429 TH+N I+ ++I LF + QL + +S P+L EDL ++N + +V + LL E V Sbjct: 496 THLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINLTIFHQVLQNLLIENV 555 Query: 430 SLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENL 488 +RD+ TI L+ + + D +L + VR++L + I + ++ V +++LE + Sbjct: 556 PIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIFQNNKIEVIKFDSKLEQI 615 Query: 489 LTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLA 548 L + ++P + N + Q K VLLV LR +A Sbjct: 616 LLKTIAN---------KDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHHNLRVFIA 666 Query: 549 RYARLFAPGLHVLSYNEVPDELEL---KIMG 576 + P + VLS E+ D ++ I+G Sbjct: 667 KMLLKNIPKIFVLSNLELEDVTKIYTTNIIG 697 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 282/575 (49%), Positives = 409/575 (71%), Gaps = 5/575 (0%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG ERISEVSARFTLDA+PGKQMAIDADLNAGLINQ QA+TRR++ Sbjct: 122 FIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQETG 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYG+MDGASKFVRGDAIAG++IL INLIGGV IGIF +++SA +FQ + L+TIGD Sbjct: 182 DEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 G+VAQIPSLLL+T+AA+IVTRVS + DI+ ++ Q+L++PSVLY + G+M ++ +VP M Sbjct: 242 GIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNM 301 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 PHLPFL+F+ALLGF GW+ SK ++ EE + + SE+ + W+ + IEPI+ Sbjct: 302 PHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSV--NPLQSPSEEVLDWQVVTDIEPIT 359 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L+LG+KLV+L++ G PL + I+G R+ +S+ G L+PE+ IR+N LKP +Y IFI+G Sbjct: 360 LTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDG 419 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + LMA+ S +++G IDG+ G DPAY MP WI K+ A+N GYQVI Sbjct: 420 EEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISL 479 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 A VIATH+NK++ + + +FNYDDI ++++L P+L+E LSAA+ L++ + LL Sbjct: 480 ADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLL 539 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNE 484 + V +++ IA ++ S TKD IL+++DVR AL+R+I + L ++ L++E Sbjct: 540 IDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSE 599 Query: 485 LENLLTNVVNQAQ-QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 L+N+L N + Q Q Q + LD VP+DPN+L Q Q +P + +QM G P+LLV P + Sbjct: 600 LDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTV 659 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 RP++++++R F+ L VLS+NE+ D+ ++ +G L Sbjct: 660 RPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 197/571 (34%), Positives = 318/571 (55%), Gaps = 8/571 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L INFIV+TKGA RI+EV+ARFTLDAMPGKQMAIDADL+AGLI++ +A+TRR ++A Sbjct: 123 FLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTRRDEIA 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 ADFYGAMDGASK+V+GDAI G++++ +N++GG+ IG+ + + A Y ++T+GD Sbjct: 183 RTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTILTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV Q+P+L++STAA ++VT ++N + + QL P ++ A G++ A++PG+P Sbjct: 243 GLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFALIPGLP 302 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 PFL +A +K E + + + E + I+PI L Sbjct: 303 MFPFLAMAAGAALLARTATKAETRR--LELATISAPVEMEELPPPPDPMRDLLQIDPIEL 360 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ L+D+ QG L +RI +R+ + G+L+P IRIR++ RL ++Y I + G Sbjct: 361 EVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKLRGS 420 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A++ LMAL + EIDG++ DP++GMP W+ +A++ +A +GY V++ Sbjct: 421 EVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVVEPT 480 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 +V+ATH+ + ++ +L ++ ++ L + P L E+ + ++ S L +V + LL Sbjct: 481 TVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQRLL 540 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E V +RD+VTI L + T+D L R AL I F + T+ Sbjct: 541 RERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITIGGR 600 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE+ L + + ++ + P L + + G+ L+ PP LR Sbjct: 601 LESALVGLFSPRSS----QPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLR 656 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIM 575 + R P L V+S E+P ++ L + Sbjct: 657 VGVRRLIEPVLPSLPVISLAELPAQITLSSV 687 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 204/566 (36%), Positives = 320/566 (56%), Gaps = 13/566 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+T GA R++EV ARFTLDAMPGKQMAIDADLNAGLI++A+A+ RR ++A+EADFYG Sbjct: 147 QFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEADFYG 206 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIA ++I +NLIGG+ IGI + +LS A Y L+++GDGLV+QIP Sbjct: 207 AMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVSQIP 266 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +LLLS + +IVTR + D+ DV Q+ + + + V+A++PG+P LPFL+ Sbjct: 267 ALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPFLIL 326 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 G R+ + P AE + + + + + +EP+ L+L + LV Sbjct: 327 GGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEM-----RVEPLELNLAFDLV 381 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD+++G L +R+R +R+ ++ G+++P +R R+N L P YAI +NG++ + Sbjct: 382 DLVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEA 441 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 P ++A+ E + G +P +G+P W+ + +A +G V+D ASVI TH+ Sbjct: 442 PPGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHL 499 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 ++VR L + +D+ L T P + E+L A L + +V + LL E V +R Sbjct: 500 AEVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIR 559 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNV 492 D+ I L + V++D L R L +I+ + + L+V T++ E L + Sbjct: 560 DLPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYAQDGRLSVLTIDPLTEQRLVDK 619 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 + + G + L DP+ + ++ E+ + G PVL LRP L R R Sbjct: 620 LRHGEHGSFLAL-----DPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVR 674 Query: 553 LFAPGLHVLSYNEVPDELELKIMGAL 578 P L VL+Y E+ L+L+ +G + Sbjct: 675 SANPRLPVLAYGELGPHLQLETVGTV 700 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 202/574 (35%), Positives = 332/574 (57%), Gaps = 16/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I ++V+ GA RISEV+ARFTLDA+PGKQM+ID DLNAGLI++A+A+ RRK +A Sbjct: 139 FLVLIAIQYVVINHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALA 198 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EA+FYGAMDGAS+F + DA+A ++I AIN+I G IG+ ++ + A + Y ++TIGD Sbjct: 199 TEAEFYGAMDGASRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGD 258 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IP+L++S + +IVTR S + + Q+L + L A G++ LA +PGMP Sbjct: 259 GLVTVIPALMISISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMP 318 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LPFL+ G GWRM K LA A + + + S E++ +EP+++ Sbjct: 319 KLPFLVLGFGAGAGGWRMRKTELAQIA------APPEDTGKPAPAKDSVESLLRVEPLAI 372 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G L+ LV+ AQ +PL +RI +R+ ++ G LLP +R+ +N L+ +Y I + G+ Sbjct: 373 EVGLGLIGLVEGAQESPLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGV 432 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++P +A+ + ++G DPA+GM TWI A + +A + GY V+DS Sbjct: 433 EIARYELPQGCELAIATGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSV 492 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SV+ TH+++I+R Y +LF+ D +L +R+ P++ ED + L S + +V + LL Sbjct: 493 SVLGTHLSEIIRRYAHELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLL 552 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNE 484 E VS+RD V+I L + T++ ILL VR A+RR++ P++ R +L + ++ Sbjct: 553 RERVSIRDAVSILEALGEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPA 612 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E+ + V +Q + L + + ++ ++++ V + R Sbjct: 613 IEHAVEAAVEHGEQNSHIQLAP--------QHIREMLNRISARIQSPETPVVAITSSGAR 664 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + A P L L++NEVP + ++ +G + Sbjct: 665 YFLRQIAEPTMPNLFFLAHNEVPPGVRVQSLGNI 698 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 174/561 (31%), Positives = 309/561 (55%), Gaps = 10/561 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA R++EV+ARF LDA+PGKQMAID+ ++G + + +A ++ D+ SE +FYGAMDGA Sbjct: 142 TKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQSEVNFYGAMDGA 201 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV G+ G +I IN++GG+ +GI L+ + A YV +T+GDGLV+Q+PSLL+S Sbjct: 202 SKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGDGLVSQLPSLLIS 261 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 T+ +IVTR ++ +Q + + +G + LA +PG P L + S + Sbjct: 262 TSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFPTLILMFLSLSIA 321 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 F + +S E ++K ++ + S++ VS + ++P++L +GY LV +VD Sbjct: 322 FLAYSLSGIRQKEEIDKK-MKLEEEQASIYSDKDVSP--VVPLDPLALEIGYNLVPIVDD 378 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 + + L RI +R+ I+ G+++P+IRI +N RL+P+ Y+ + G++ +I K Sbjct: 379 TKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVGRGEIKLGKF 438 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 + + G IDG DP++G+P W+ + A +GY V+D S+IATH+ ++++ Sbjct: 439 LVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSIIATHMTELIK 497 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 + ++ D+ + + E++ + ++ +V + LL E VS+R++VTI Sbjct: 498 RHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKNFSVGEIQRVLQGLLKEQVSIRNLVTIF 557 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQ 497 + +++TKD L R ++ R IT ++ EL V TLN E ++ + ++ Sbjct: 558 ETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQMIIDSRVESN 617 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 +DPN+ +F + ++ +++A G PV+L RP++ P Sbjct: 618 HD-----LISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITSREIPD 672 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L V+S EVP +++ ++ + Sbjct: 673 LVVMSVLEVPQNIKVNVLKTV 693 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 187/570 (32%), Positives = 321/570 (56%), Gaps = 13/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + +V+TKGA RISEV+ARFTLDA+PGKQMAID +L++G IN+ +A+ RRK + Sbjct: 121 FIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E DFYG+MDGASKFV+GD AG++I AINL+GGV IG S A + Y TIGD Sbjct: 181 AEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL + A IIVTR D+A ++QL ++ VLY G + A +PG+P Sbjct: 241 GLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLP 300 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +P ++ SA + + G+ + + + +S+E + + + + +E + +PI + Sbjct: 301 FIPLVILSAGIAYLGYSL---EQTVKEQLESIEKKEKESGQDRKPKDFYEEL-RTDPIEI 356 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD +QG L +I +R+ + NGV++P +RI +N L P Y+I ING Sbjct: 357 EVGYHLIPLVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGT 416 Query: 307 KADEADIPADKLMALPSSETYGE-IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + DKLMAL +S E I G +P++G WI + K++A GY V+D+ Sbjct: 417 EVGISTVKPDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDA 476 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN--YSQLLKVYRA 423 ++V+ TH+ +++ ++ L +++ +L + ++ P L +L A + +V + Sbjct: 477 STVVVTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQN 536 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 LL EG+ +R++V I + + + ++ +L VR ++ R++ ++ +L V TL Sbjct: 537 LLREGLGIRNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLE 596 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 + + + L + Q + + D + + P+ + ++ ++ + GK P+ +V Sbjct: 597 SRILDRLNKSITQDRIENR---DVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRD 653 Query: 543 LRPLLARYARLFAP--GLHVLSYNEVPDEL 570 +R + P VL+Y E+ + Sbjct: 654 VRLPFSYLLAKEFPPRNFGVLAYEEIHSSV 683 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 195/575 (33%), Positives = 313/575 (54%), Gaps = 16/575 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 LL +NF+V+TKG+ RI+EV+ARF LD+MPGKQMAIDADL++G IN+ A+ +RK++ Sbjct: 169 FCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAINERTARAKRKELE 228 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA+KFVRGDAIAG++I AIN++GG+ IGI ++++ A + +T+GD Sbjct: 229 DESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSEAASTFTTLTVGD 288 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STAA I+VT+ +G + QL +P L A G+ + A++PG+P Sbjct: 289 GLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGGLSALFAIMPGLP 348 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LPFL+ + G W K P+ + + + T SE + Sbjct: 349 ALPFLVIAVGAGIGAWMRHKTPVKDGDGDVTQISPQPTAPPISEMLKLDLLRLEL----- 403 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 G+ L+ L LT++I+ +R+ ++ G + P +RI++N L Y I + I Sbjct: 404 --GFGLLPLTSGEN-PQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDNYVIKLKEI 460 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ KLMA+ S ++ G + +PA+G+P WI + K KA+ M ++D A Sbjct: 461 EIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAMKCTIVDPA 520 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVI TH+++ VR +PDL Y L + L +L DL + + S + +V ++LL Sbjct: 521 SVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTIQRVLQSLL 580 Query: 426 TEGVSLRDIVTIATVLVA-SSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNN 483 E VS+RD+ TI + S + L VR+ L R I + V + + TL+ Sbjct: 581 AERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGYIPMITLSA 640 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E + ++ + P+MLN+F + +V + A+G+ PV++V + Sbjct: 641 EWEAEFMAHITGQADDRRLAMP-----PSMLNKFVGKLREVFNTVSASGEIPVVVVSTPV 695 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + P + VLS +E+ +K + + Sbjct: 696 RDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATI 730 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 199/590 (33%), Positives = 318/590 (53%), Gaps = 36/590 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T G+ R++EV ARF LDAMPGKQMAIDADLN+GLI+ +A+ RR ++ EADFYGAMDGA Sbjct: 146 TNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEAKKRRAALSQEADFYGAMDGA 205 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIA ++I IN+IGG +G+F+ ++S + + ++TIGDGLV QIP+L+++ Sbjct: 206 SKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGDGLVGQIPALIIA 265 Query: 139 TAAAIIVTRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSAL 196 TA I+ TR + + D A + QL L + + A +PG+P L Sbjct: 266 TATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANLLLFATIPGLPTFSLAFVGTL 325 Query: 197 LGFTGWRMSK------------------------QPLAAEAEEKSLETLTRTITETS-EQ 231 F W +S+ +P +++ + + T T+T E E+ Sbjct: 326 FLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSKIKPHAPTTKTKTPEEIKREE 385 Query: 232 QVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIREN 291 + + + + IE + L+LGY+L++L D QG L +RIRG+R+ I+ G L+P+IRIR+N Sbjct: 386 EQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDN 445 Query: 292 FRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQ 351 +L P+ Y I + GI E + DK +A+ + EI+G+ +PA+GM WI A Sbjct: 446 LQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKN 505 Query: 352 KAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA 411 K +A+ GY +ID ++VIATH +++V+ Y D D++ L RL+ P + E+ S Sbjct: 506 KEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEE-SKK 564 Query: 412 LNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPF 470 + + V +ALL E + ++D++TI + + + + D +L VR L R IT+ F Sbjct: 565 IPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAF 624 Query: 471 -VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMK 529 L T + + E L N + + ++L+ L + + + ++ Sbjct: 625 KSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE-----LQKLIEGVSEEAMKVL 679 Query: 530 AAGKDPVLL-VPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 G PV+L V P LR L+ + VLS+ E+ + +G + Sbjct: 680 QKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTI 729 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 185/574 (32%), Positives = 320/574 (55%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+VV+ GA R +EV+ARFTLDA+PGKQMAIDAD+NAGLIN+A A+ RR+ +A Sbjct: 132 FIALIAIQFLVVSHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIA 191 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA++F + D++A ++I IN++ G+ IG ++ ++ A + Y ++T+GD Sbjct: 192 QEAEFYGAMDGAARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IPSLL+S A I++TR S G + ++ QL + LY A+G++ L +VPG+P Sbjct: 252 GLVTMIPSLLVSVAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLP 311 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L FL+ + +L G ++K+ + + +++ ++ +SL Sbjct: 312 KLAFLVPAVILAGIGRTVTKEQ------PAEEAAEEAGKKADPSRADNLDSVLKVDDLSL 365 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G++L+ LVD+AQG + R+R +R+ ++ G L+P + I +N RLKP +Y + + G+ Sbjct: 366 EIGFQLIPLVDEAQGGLMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGL 425 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A++L+A+ + + G + +PA+G WI + +AL GY V+D A Sbjct: 426 EIGRWQTEANQLLAVSNEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPA 485 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 + I+TH+ +++R++ +L + + +L + L+ + P+L E+L ++ ++ KV + LL Sbjct: 486 TAISTHLAELIRTHAHELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLL 545 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E VS+RD+ TI LV + + + VR AL R +T + L V L Sbjct: 546 REQVSIRDLGTILETLVEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPA 605 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L ++ P + + ++ ++ + ++ PVLL R Sbjct: 606 LEEALIAATQSEPPTDALLDRRTPASAQLFARISESLKKLSQNHPSSAL-PVLLCQSPAR 664 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R+ P + VL+ E+ E+ + +G L Sbjct: 665 YYLRRWLEPVFPRITVLAPPEIGPEIRVHSIGVL 698 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 214/570 (37%), Positives = 333/570 (58%), Gaps = 13/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EV+ARFTLD+MPGKQ+A+DADLNAG +++++A+ RR ++ Sbjct: 124 FLILVIINFVVITKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAGM+IL +NLIGG+ +G+ +++L A +Y L+T+GD Sbjct: 184 READFYGAMDGASKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L++STAA I+V+R S D++ + Q+ P LY A ++ L V+PG P Sbjct: 244 GLVTQIPALIISTAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 H+ FL +A+L +++ +A + L + V+W+ IP ++ ++L Sbjct: 304 HVAFLTIAAVLAALALWLTRHRESAAFDSTPLPPIEEEALPV---DVTWDDIPPVDVLAL 360 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY+L+ LVD+ QG RI R+ + G+++P IR+R+N LKP+ + I + G+ Sbjct: 361 EVGYRLIPLVDRNQGGAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGV 420 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 ++P +++A+ + + G IDG G DP +P WI AA+ +A G+ V++ A Sbjct: 421 DVAHGEMPTGQILAVDTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPA 480 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +IA V + R + P+L ++ QL + L+ + P L ED+ L + + + + L+ Sbjct: 481 ELIARQVEAVFRQHAPELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLI 540 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNE 484 E V +RD T+ L A + T+D L VR AL RSI F L V L Sbjct: 541 AENVPIRDTRTLFETLAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPT 600 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E+ L + + G+ +L P+ L+ Q + +A G PVLL P LR Sbjct: 601 TESRL---LYEMGDEGEALLA-----PSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLR 652 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKI 574 +L+R R P L V++Y EVP + +++ Sbjct: 653 AILSRLLRRTLPRLAVIAYAEVPADKTVQV 682 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 160/588 (27%), Positives = 295/588 (50%), Gaps = 22/588 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKG+ER++EVSARF+LDAMPGKQM+ID D+ AG+I+ +A+ RR + Sbjct: 121 FLIITIVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G+MDGA KFV+GDAIAG++I+ +N++GGV IG+ + L+A A Q Y ++T+GD Sbjct: 181 KESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V+Q+P+LL++ A IIVTRVS D+ D+ Q++A P + ++ + ++PG Sbjct: 241 GMVSQVPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETL-----TRTITETSEQQVSWETIP 239 P + FL+ + L+G G+ +S++ + + L++L T + Sbjct: 301 FPTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGR 360 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLT-----QRIRGVRQVISDGNGVLLPEIRIRENFRL 294 L E + ++ L+ VD +Q L + VR+ + GV P I +R N + Sbjct: 361 LGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGM 420 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMP---VTWIQAAQ 351 +Y I + + ++ A L+ S E+ G+ + +P W+ Sbjct: 421 GEGEYLISLQEVPVARGELKAGYLLVRESVSQL-ELLGIPYEKGEHLLPDQETFWVSVEY 479 Query: 352 KAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA 411 + + + + V+ H++ ++R Y D + L ++ L +++ Sbjct: 480 EERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKEVQRI 539 Query: 412 LNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV 471 + ++ ++ + L+ E +S+R++ +I +V KD + L +R +L+R I + + Sbjct: 540 VPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYA 599 Query: 472 RKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 L Y + E+E + + V Q G + L DP + + + + Sbjct: 600 NGNNILPAYLFDQEVEEKIRSAVRQTSAGSYLAL-----DPAVTESLLEQVRKTIGDLSQ 654 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 PVL+V +R + + GL VLSY E+ ++ ++ +G + Sbjct: 655 IQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 208/594 (35%), Positives = 331/594 (55%), Gaps = 30/594 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+VVTKG+ R+SEV ARFTLDAMPGKQMAIDADLNAGLI++ A+ RR++V Sbjct: 135 FCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVI 194 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EA+FYGAMDG+SKF++GDA+AG++I IN+IGG IG F+++++ A Y ++TIGD Sbjct: 195 AEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGD 254 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP L+ STA AII+TR S D + A QLL+ L ++F+ A+VPG+ Sbjct: 255 GLVSQIPGLITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGL 314 Query: 186 PHLPFLLFSALLGFTGWRMSK--------------QPLAAEAEEKSLETLTRTIT----- 226 P L + + G+ + +P AA A + T Sbjct: 315 PTLSLGFMALVFLSLGYLTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEE 374 Query: 227 -ETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPE 285 E++ I +E + L LGY L+ L + N LT+RIR +R+ I++ G L+P+ Sbjct: 375 EILKEEEHKINDILKVEILELELGYGLIKLAE----NELTERIRSMRRSIAESLGFLMPK 430 Query: 286 IRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVT 345 IRIR+N RLKP++Y+ + G+ A+I DK +A+ S EI+G+ +PA+ Sbjct: 431 IRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDAL 490 Query: 346 WIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLA 405 WI A K +A GY VID ASVI+TH++++++++ +L ++ L +++ + P + Sbjct: 491 WIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIV 550 Query: 406 EDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 E S + K+ + LL + ++D++TI + + V+K ++ VR +L R Sbjct: 551 EGALGVAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARM 610 Query: 466 ITHPFVRK-QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQV 524 IT+ ++ L ++ L++ +L V Q + G + SV +++ ++ + V Sbjct: 611 ITNMYLDDKGNLDIFILDSASSAVLMENV-QFRDGSYHLPLSVAQTGTLVDTLRAEVAAV 669 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 K +L V PQLR +A F+ + VLS+ E+ + G + Sbjct: 670 AN---GRIKPFILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 572 bits (1476), Expect = e-162, Method: Composition-based stats. Identities = 184/576 (31%), Positives = 299/576 (51%), Gaps = 8/576 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + V+TKGA RI+EV+ARFTLD K M+IDA+ NAG+I + +A+ R++ + Sbjct: 122 FIILIAVQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGASKFV G+ G+ I +N+I G+ +G+ AA Q Y +TIGD Sbjct: 182 READFFGAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL+AQ+PSLLLS A IVTR SD G +V+ Q S V + +G + V+AV+PG P Sbjct: 242 GLLAQLPSLLLSVATGFIVTRSSDQGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQPL-AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 H + F G ++ K+ + E + + + +T + I ++P+S Sbjct: 302 HSILFFMAVCFAFVGLQLRKRERVHVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLS 361 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L LGY L+ LVDK +G L RI +R+ + G++ P+IRI +N RL PS Y I G Sbjct: 362 LELGYGLIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQG 421 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 ++ + +A+ S + E+ G + DP +G+P WI + +A +GY V+ Sbjct: 422 LEVARGKLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAP 481 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 +++IATH+ +++R+ D+ ++ + + L P + +D++ ++ KV + LL Sbjct: 482 SAIIATHLTQVIRTNAADILGRQNVQMIIDALRKEYPAVVDDVTQKCPLGKIQKVLQGLL 541 Query: 426 TEGVSLRDIVTIATVLVASSTV--TKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 E VS+R+ V I L ++ T +L VR L R I + +Q L V L+ Sbjct: 542 REQVSIRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLD 601 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 + LE L+ + L + + + Q + V + G PVLL Sbjct: 602 SSLETFLSEKIALTVD----SLSILTLSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDT 657 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + V+SY EV ++ ++ +G + Sbjct: 658 IRSAMWNLFFSDRIEIAVMSYKEVSTDMRIETVGVV 693 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 219/574 (38%), Positives = 331/574 (57%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+ +A+ RR++VA Sbjct: 127 FGILMVINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVA 186 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFV+GDA+AG++IL IN+ GG+ +G + LS A Y+++ IGD Sbjct: 187 TEADFYGSMDGASKFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGD 246 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 LVAQ+P+LLLS AAA IVTRVS D++ + +Q S I+ +L +VPGMP Sbjct: 247 ALVAQVPALLLSIAAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMP 305 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 H+ L +A+ GF W++SK A +A E + S + W I + L Sbjct: 306 HMIILSAAAVAGFVAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGL 365 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY LV LVD+ +G PL RI G+R+ +S G ++P +R+R+N L P+ Y I + G+ Sbjct: 366 ELGYGLVGLVDERKGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGV 425 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 E + ++L+AL S + G ++G + DP++G+ WI ++ A+ GY V+D A Sbjct: 426 IMGEDECFPEQLLALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPA 485 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ATH+N+++ + DLF D+ +L + L AP+L L L+ +Q+ RALL Sbjct: 486 TVVATHLNQVIAATAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALL 545 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 EGV L+D IA +V ++ + D + L ++R + I V K L V TL+ Sbjct: 546 AEGVPLKDFRRIAEAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAG 605 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE+LL V + P +P + N+ + + + + + ++ P R Sbjct: 606 LESLLAQAVRTSPGASH------PFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIAR 659 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LAR + P V+S+ E+PD +++ + Sbjct: 660 RALARLLKPHLPETPVMSFLEIPDGKAVEVAAVV 693 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 565 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 191/567 (33%), Positives = 306/567 (53%), Gaps = 10/567 (1%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKG+ RI+EV+ARFTLD+MPGKQMAIDADL+ GLI+Q +A+ RRK++ E+ F+G Sbjct: 142 NFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAKIRRKELEQESTFFG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIAG++I AIN+IGG+ IG+ ++ + A Y +MTIGDGLV+QIP Sbjct: 202 AMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQIP 261 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++S AA ++V++ G + QL +P L + ++A++PGMP PF Sbjct: 262 ALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAM 321 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + G ++ + +A + + ++ I+ + + LGY L+ Sbjct: 322 ALAAGALAYKRVQDAKKPKALD---PADLEAAAPSEPEEEPISASLAIDDVKIELGYGLL 378 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 L++ G LT +IR +R+ ++ G ++P +RI +N RL YAI I ++A ++ Sbjct: 379 TLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEV 438 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 LM + E+ G +PA+G+P TWI + +A GY V+D A+V+ TH+ Sbjct: 439 RLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLTTHL 498 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 +I++ + DL +Y ++ +L L T +L +DL + + + +V ++LL E VS+R Sbjct: 499 TEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVLQSLLRERVSIR 558 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSIT-HPFVRKQELTVYTLNNELENLLTN 491 D+ I + ++ T L VR L R + L + TL+ + E Sbjct: 559 DLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIITLSADWEQAFAE 618 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + ++ L P+ L F + E+ AG+ PVLL P +RP + Sbjct: 619 ALIGPGDDKQLALP-----PSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRPYVRSII 673 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 F V+S NE+ LK +G + Sbjct: 674 ERFRGQTVVMSQNEIHPRARLKTVGMV 700 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 184/573 (32%), Positives = 310/573 (54%), Gaps = 6/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ +NF+V+TKGA RI+EV ARFTLDA+PGKQMAIDADL++GLI++ +AQ RR+++ Sbjct: 155 FAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELE 214 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+G+MDGASKFVRGDAIAG++I A+N+ GG+ IG ++ + A + +++GD Sbjct: 215 EESSFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGD 274 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L++S AA ++V++ G + QL A P L A ++F+L V+PG+P Sbjct: 275 GLVTQIPALIVSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLP 334 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 PF L + F G + ++ A + E + E + +++ S + I L Sbjct: 335 AFPFFLLGGAMAFVGIAVPRRQ-ARQREADAAEAGKKQREAEEQERNSVKASLETNQIEL 393 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Y I I+G Sbjct: 394 CLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGT 452 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 ++ +++ + + G + +PA+GM + A GY +D+ Sbjct: 453 AVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNL 512 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS L V + LL Sbjct: 513 SVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLL 572 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 E +S+R++ I + + + + ++ VR+ + + I L V L N Sbjct: 573 AERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVLNVLRLGNRW 632 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 + + + + +G V D +DP +L QF + + G+ VL+ P+ RP Sbjct: 633 DLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 689 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + L VLS+ E+ +E+K +GA+ Sbjct: 690 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAI 722 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 168/572 (29%), Positives = 283/572 (49%), Gaps = 15/572 (2%) Query: 17 VVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMD 76 VVTKGAER++EV+ARF LDAMPGKQMAIDADL AG+I+ QA+ +R + E++ YGAMD Sbjct: 140 VVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMD 199 Query: 77 GASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLL 136 GA KF++GD IAG++I IN++GG+ IG+ + + A Y L++IGDGLV+QIPSLL Sbjct: 200 GAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLL 259 Query: 137 LSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 +S A I+ TRVS + ++ ++ +QL+ P L A+ + G P F + S Sbjct: 260 ISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILS 319 Query: 195 ALLGFTGWRM--SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 + G G + K A + + T+ + + + L P+ L LG L Sbjct: 320 FIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDL 379 Query: 253 VALVD---KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR-ENFRLKPSQYAIFINGIKA 308 AL+ K+ + + I +RQ + G+ P I +R ++ L+ Y I +N + Sbjct: 380 SALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPY 439 Query: 309 DEADIPADKLMALPSSETYGEIDG-VQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 IP ++ E + A G+P W+ K + Sbjct: 440 VRGKIPPHHVLTNEVEENLKRYNLPFITYKNAAGLPSAWVSEDAKTILEKAAIKYWTPLE 499 Query: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTE 427 VI H++ + ++ + + + P L ++++ + +L ++++ L+ E Sbjct: 500 VIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQE 559 Query: 428 GVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELE 486 +S++D+ TI L + KD +LL VR +L+ I+ F + Q ++VY L+ E+E Sbjct: 560 QISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIE 619 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 ++ + Q G + L DP+ +N +M G+ PVLL +R Sbjct: 620 EMIRGAIKQTSAGSYLAL-----DPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRY 674 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + P + V+SY E+ E+ ++ +G + Sbjct: 675 VRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 195/577 (33%), Positives = 307/577 (53%), Gaps = 15/577 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGA R+SEV+ARFTLD++PGKQMAIDA++NAG+I++A+A+ RR + Sbjct: 133 FLILIVIQFVVITKGAGRVSEVAARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLM 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E++FYG MDGAS+FVRGDA+A ++I AINL GG IG+ + A ++Y ++TIGD Sbjct: 193 RESEFYGTMDGASRFVRGDAVAAIIITAINLFGGFIIGLT-KGMPLAEAVRRYSILTIGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L+ +TA+A++VT+ + + ++ Q A+ A I+ LA+VPGMP Sbjct: 252 GLVTQIPALITATASAMLVTKATSGTSLGEELGGQFSAASGPFRLAAFILIALALVPGMP 311 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS--WETIPLIEPI 244 LPFL L RMS+ P A + S+ V + + + Sbjct: 312 MLPFLALGVALLLLSRRMSRVPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRV 371 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 SL +G L+ +V +G L RI G+R+ ++ +G+ +P +R+R+N +L P Y I + Sbjct: 372 SLEIGAALIPMVSARRGPGLIDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLG 431 Query: 305 GIKADEADIPADKLMALPS-SETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + D+ D +A+ + G +PA+G+P WI A + +A G+ V+ Sbjct: 432 GREVARGDVRPDLWLAIDPGGAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVV 491 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 DS +VI TH+ ++VR + +L DD+ + +R+ T P + +DL ++ L +V Sbjct: 492 DSPNVIITHLGEVVRRHAGELLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLT 551 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTL 481 LL E V + ++ I L A + KD LA VR+ L R++ F + L Sbjct: 552 QLLDERVPISNLPRILESLAAHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVL 611 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + LE L V Q + +DP+ L Q + + A G + LL Sbjct: 612 DPRLELDLKRAVQNNQ---------LIIDPSRLEQLTMRVAAELRKAGARGYEAALLCDA 662 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LR L L V+SY E+P +L ++ + + Sbjct: 663 GLRRALRHSLARALHDLSVVSYQEIPTDLLMEPVAVI 699 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 192/574 (33%), Positives = 317/574 (55%), Gaps = 16/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L LL +NF V+TKG+ R+SEV+ARFTLDA+PGKQMAIDADL AGL++ +A+ RR+ + Sbjct: 125 FLILLIVNFTVITKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +F+GAMDGASKFVRGDA+AG+ I +N++GG+ G+ + +LS A + Y L+T+GD Sbjct: 185 RETEFFGAMDGASKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+Q+P+LL+STAA ++VTR + D+ V +Q+L P VL T G++ L ++PGMP Sbjct: 245 GLVSQMPALLVSTAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F + L A + + + + ++ + L Sbjct: 304 LVAFGGVAGALLLA--------ARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALEL 355 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY LV L+D +G L R+ +R+ ++ G++LP + +R++ RL P QY + + G+ Sbjct: 356 GVGYGLVPLIDLDKGGELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGV 415 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++LMAL + ++GV G DPA+G+ WI A + +A +G ++D+A Sbjct: 416 ELGRGLAHPERLMALDPNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAA 475 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SVI TH+++++R ++ ++ +L L AP+L ED + A++ +L++V R LL Sbjct: 476 SVITTHLSELLRRNAHEIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLL 535 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 EGVS+RD+ T+ + ++ +K+ L R L R +T + TL+ Sbjct: 536 REGVSVRDLRTVLEAVADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRS 595 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E L + + + D + +++ ++ AG+ VLL PP LR Sbjct: 596 TEETLRATLGASDGEAALAPDV-----ETARRLVASLESGATRLTGAGQPVVLLAPPDLR 650 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L +A F P + VL+ E+ ++ G + Sbjct: 651 RPLFDFASRFVPDVQVLAARELAPGTTVEPAGTV 684 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 218/574 (37%), Positives = 345/574 (60%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INFIV+TKGA RI+EVSARFTLDAMPGKQM+IDADLNAGLI++ +A+ RR++++ Sbjct: 119 FLILVIINFIVITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEIS 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIA ++I+ IN+IGG+ IG+ + + A Q YV++TIGD Sbjct: 179 READFYGAMDGASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL AQ+P+L+ STAA I+V+R + ++ D+ QL +P L TA+G++ +L ++PG+P Sbjct: 239 GLAAQVPALITSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLP 298 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPF++ + + G + M ++ E +EK + + E++ ++PISL Sbjct: 299 HLPFIIIAVVSGAIAYLM----ISKEKKEKEALPPPPVEEKPVSMEAQLESLLRVDPISL 354 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LV+ + L +RIR +R+ I+ G ++P I I++N LKPSQY+I I G+ Sbjct: 355 EIGYNLIPLVEGE--SSLVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGV 412 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++I + +A+ + +IDG+ DPA+G+ WI+ +KA +G+ V+D++ Sbjct: 413 EIATSEIILGRFLAIGAR-PGQDIDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDAS 471 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVI TH+ +++++Y +L + +L + L+ T PR+ +DL L SQ+ KV + LL Sbjct: 472 SVIVTHLREVLKNYGYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLL 531 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E VS++D+ TI L + VTKD +L VR AL R IT ++ Sbjct: 532 RERVSIKDLQTILETLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPS 591 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE + QG + DP ++ + + ++ ++ G PVL+ +R Sbjct: 592 LERTFIESLQTTPQG-----INFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIR 646 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + R AP L VLS E+ +++ + G + Sbjct: 647 RFIKRAIERIAPSLPVLSPQEIAPGVKILMFGTV 680 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 199/582 (34%), Positives = 318/582 (54%), Gaps = 25/582 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKGA R++EV+ARFTLD+MPGKQMAIDADLNAG I+ QAQ RRK + SEA+FYG Sbjct: 128 NFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEANFYG 187 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDG+SKFV+GDAIA ++I +NL+GG+ +G+F++NLS A + Y ++TIGDGLV+QIP Sbjct: 188 AMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLVSQIP 247 Query: 134 SLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 +LLLSTA AII+TR +D+ A NQL+ L + + A+VPG P + Sbjct: 248 ALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPTFILMT 307 Query: 193 FSALLGFTGW--------------RMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETI 238 L+G G+ R K P + ++ R +++ + ETI Sbjct: 308 MGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQTIETI 367 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 +E + L LG +L+ LV + L +I+ +R+ I+ G ++P+IRI ++ L P++ Sbjct: 368 MKLEVLELKLGIRLLQLVQGN--SELLDKIKAIRKTIASELGFVIPQIRISDDSYLSPNE 425 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y +++ I + I DK +A+ ++ G+ +P + + TWI + +AL Sbjct: 426 YQLYLKRIPLVKGRIEVDKFLAM-GGTGNEKLQGIHVKEPVFNLDATWITGDLREEALMK 484 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 G+ V+D+ ++I+TH+++I++ + D+ DI + RL P + E+ +Y LL Sbjct: 485 GFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAMKVTSYGALL 544 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELT 477 KV + LL E + + D++TI + + TK +L VR L R IT F L Sbjct: 545 KVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDTDGILH 604 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV- 536 + T+ ++E + + ++ML + N + Q+ + ++ G V Sbjct: 605 IITIKPDVEQQFIGKLQEHHGISQLMLSIAEI-----NNLVTKTKQLLDDVEMKGFSKVC 659 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++V P LR ++ F + VLS+ E+ + I G L Sbjct: 660 MVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 200/570 (35%), Positives = 326/570 (57%), Gaps = 16/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ + ++VVT GA+R++EV+ARFTLD+MPGKQM+IDAD+N GLI++ +A+ RR+++ Sbjct: 120 FLILIVVQYVVVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIAG++I+ I++IGG+ +GI + LS A Y L+T+GD Sbjct: 180 REASFYGAMDGASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIP+L++STA II+TR + + + ++ Q+ P L T + L ++PG+P Sbjct: 240 GIVTQIPALVISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP + ++L+ KQ EAE+ E +E+ + E +EP+ + Sbjct: 300 ALPIFIVASLMAALVVYAFKQNKYQEAEDNV------EDQEDAEKDIYEE--LKVEPLEI 351 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLG + + ++G L I+ +R+ ++ G +LP ++I + R +Y + ++G Sbjct: 352 SLGPSIAGYLGASEGA-LMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGA 410 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + E ++ +D+++A+ + + ++ GV DP YG+P WI+ K KA ++D Sbjct: 411 QVAEGELYSDRILAISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPL 470 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ THVN+ VR P L + +L R+ + L E+L L S + KV + LL Sbjct: 471 TVMLTHVNETVRLQAPALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLL 530 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTVYTLNNE 484 E VS+R+I IA LV + V+KDH LA VR L I + + L V +++ Sbjct: 531 QEKVSIRNIELIAEALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPG 590 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E L+ + + +QG S+ VDP + Q S++ + E+M A G PVL+ P +R Sbjct: 591 IEQLMQSGIRVTEQGA-----SLYVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVR 645 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKI 574 + + + P L VL+ EVP + +K Sbjct: 646 RHIRKLSGRLLPHLTVLALTEVPVGMNIKS 675 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 202/614 (32%), Positives = 322/614 (52%), Gaps = 54/614 (8%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVT G+ R+SEV ARFTLDAMPGKQMAIDADLN GLI Q +A+ RR ++A+EADFYG Sbjct: 142 NFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFYG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGA+KFV+GDAIAG++I IN+IGG IG+F+ ++S A + ++TIGDGLV+Q+P Sbjct: 202 SMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQLP 261 Query: 134 SLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 +L++STA IIVTR S G + A + +QL+ L I+ + A+VPG+P + Sbjct: 262 ALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLPTISLGF 321 Query: 193 FSALLGFT-----------GWR----MSKQPLAAEAEEKSLETLTRTITETSE---QQVS 234 L W+ + K+ +AEE R S Q + Sbjct: 322 VGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGGQTPQNA 381 Query: 235 WETIPLIEP-----------------------ISLSLGYKLVALVDKAQGNPLTQRIRGV 271 + P +P + + LGY+L+ D AQG L +IR + Sbjct: 382 QQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELVNKIRAI 441 Query: 272 RQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEI- 330 R+ ++ G+L+P + +R++ L P +Y I + I+ + I DK +A+ SS GE+ Sbjct: 442 RKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSGFVGELP 501 Query: 331 DGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDI 390 DG+ +P +G+ WI +K A+ GY +ID A+VI+TH+ ++++ Y +L ++ Sbjct: 502 DGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEELLTRQEV 561 Query: 391 TQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTK- 449 L +L P LAE++ + + + + LL E + ++D+++IA + K Sbjct: 562 ANLVAKLGQDYPILAEEIKG-VGIGTIQHILKELLHEQIPIKDMLSIAEAIADGYPAYKA 620 Query: 450 DHILLAADVRLALRRSITHPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVP 508 D L+ VR L+R ITH F L + L+ LE L + Q+ G+ + Sbjct: 621 DLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ----RLR 676 Query: 509 VDPNMLNQFQSTMPQVKEQMKAAGKDPVLL--VPPQLRPLLARYARLFAP--GLHVLSYN 564 + P + ++ + G P ++ VP LR LA + + + VLS Sbjct: 677 LSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVLSTA 736 Query: 565 EVPDELELKIMGAL 578 E+ + + +I+G++ Sbjct: 737 EIDYQSKFEILGSI 750 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 162/575 (28%), Positives = 281/575 (48%), Gaps = 23/575 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EV+ARFTLDA+PGKQMAIDA+L G I+ +++ RR + Sbjct: 121 FLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAG++++ IN++GG+ IG+ +S Y L+TIGD Sbjct: 181 KESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 L++QIP+LLLS AA +VTRV + ++ D+ NQL AS L A ++ + VPG Sbjct: 241 ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P F + +A+ + +A++ T+T ++T PI Sbjct: 301 FPLPVFFMLAAVFAAA---SFVKGDVLDADKVDATTVTPAESQTP------NVAAQPNPI 351 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 + L L +D+ + L Q I + Q++S G+++P I + + +L SQ+ I + Sbjct: 352 GVFLAPSLTNAIDQVE---LRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRIDVE 408 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G+ ++ I ++L E G+ +DP W++ + + G + Sbjct: 409 GVPVEQDLINP-AQLSLADDLKKIESSGIPFRHDPETHR--IWVEQSHEPALKAAGIRHH 465 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 + ++A V+ + + P L + QL R+ L +++ ++ V R Sbjct: 466 SPSELLAMRVHATLTCHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRR 525 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNN 483 LL EG+ +R+ + L S ++ LL VR ++R I H + R L + + Sbjct: 526 LLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVRSGMKRQICHRYGRHGVLPAFVMER 585 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E+++ V + G + L+ S M QV P++L + Sbjct: 586 ETEDVVRCAVRETAAGPYLALED-----RQSEALLSQMRQVFSSTAPGQTRPIVLTSMDV 640 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + + L VLSY ++ + +++ +G++ Sbjct: 641 RRFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSI 675 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 162/582 (27%), Positives = 280/582 (48%), Gaps = 18/582 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL AG ++ +A+ RR +A Sbjct: 117 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAGHLSPEEARKRRALLA 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ IGI +N++A A ++ +++IGD Sbjct: 177 MESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG------DIAHDVRNQLLASPSVLYTATGIMFVLA 180 +V+QIPSLL+S AA +++TRVSD + ++ QL S ++TA+ ++ A Sbjct: 237 AMVSQIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFA 296 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEK-SLETLTRTITETSEQQVSWETIP 239 +VPG P F+ + L+ G+ + + + +E +L L R ++ ++ + Sbjct: 297 LVPGFPSFLFVALATLIFVFGYTLRNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPS 356 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 P+ + LG +L +D L + R +++ G+ P I I + L+P Y Sbjct: 357 FTVPVGVRLGAELAKGLDVPA---LDTAFQQGRHALAEALGLPFPGIAIWKADALQPDSY 413 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 + ++ I + +P L+ E P + P WI A A+ + Sbjct: 414 EVRVHDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAP-HWIAPAHVAQDAALS 472 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 VIA HV ++R + + R+++ P L + A+ ++ Sbjct: 473 ATGQRVERVIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEAQKAVPAQRIAD 532 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTV 478 V R LL E V +R++ I LV KD ++L VR L R I H +++ Sbjct: 533 VLRRLLEEQVPIRNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPA 592 Query: 479 YTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP-VL 537 L+ +E + + G + L DP + + + + + Sbjct: 593 ILLDLSVEQTVRQAIKPTPAGNFLTL-----DPQQVEAIIMRLRGIMQGNPVETPSALAI 647 Query: 538 LVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 + +R + R L+V S+ E+ ++L+ +G L+ Sbjct: 648 VTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDLRPVGKLV 689 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 182/586 (31%), Positives = 285/586 (48%), Gaps = 28/586 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L +NF+V+TKG+ER++EV+ARFTLDAMPGKQM+ID+DL AGLI QA+ RR+++A Sbjct: 124 FLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLA 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I+ IN+IGG IG+ + + A AA Y ++TIGD Sbjct: 184 KESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-----DIAHDVRNQLLASPSVLYTATGIMFVLAV 181 GL+AQIP+LL+S A +I+TRVS +G +I ++ QL + P + M A+ Sbjct: 244 GLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFAL 303 Query: 182 VPGMPHLPFLLFSALLGFTG----WRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWET 237 +PGMP F++ SA+ +G WR+ +Q +A+E + L + + ++ Sbjct: 304 LPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQL-------APEDNGYQD 356 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 + P L ++ L Q IR +R + G LP I + L Sbjct: 357 LRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAAD 416 Query: 298 QYAIFINGIKADEADIPADKLMA----LPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKA 353 ++ + I A ++L + GE DG A W + Sbjct: 417 EFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQH 476 Query: 354 KALNM-GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL 412 L + ++ +I + + + + + N L S P LA++L + Sbjct: 477 PLLQQEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIM 536 Query: 413 NYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR 472 S+ V + L +E + LR + TIA L+ +D L VR+AL+ I H + + Sbjct: 537 PLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQ 596 Query: 473 KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 L V+ L E E LL + + QAQ L + N+LNQ +S P Sbjct: 597 PNGLNVWLLTPETEELLRDSLRQAQSETFFSL-AQEYGINLLNQMRSAFP------PYDN 649 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++LV LR L + + VLS+ E+ + + ++G L Sbjct: 650 HHALILVAQDLRSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRL 695 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 163/574 (28%), Positives = 287/574 (50%), Gaps = 15/574 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+TKGA R+SEV+ARF LD+MP K MA++++L AG I +A+ +RK + E+DFYG Sbjct: 135 QFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRKKIRGESDFYG 194 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 MDGASKFV+GD IAG++I IN++GG+ IG+ A Y T+GDGLV+QIP Sbjct: 195 TMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFTVGDGLVSQIP 254 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 S +S A ++VTR S +++ + Q+ A P L+ G F L ++PG P + + Sbjct: 255 SFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLPGFPKIALFII 314 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + L G+ + K+ E T T + + + +E I LS+G L+ Sbjct: 315 ALALFLAGYALKKEQQELGLNEDG--TKTDAGEQVHQGPLDVTPFLKVEKIELSVGASLI 372 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 L +++G L RI +R+ ++ G+++P +RI +N ++P +Y + ING + + + Sbjct: 373 PLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSINGTEMAKGFV 432 Query: 314 PADKLMALPSSETYGEI-DGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 + L+AL ++ G D + +PA+G+P WI+ +K A G+ + SVIATH Sbjct: 433 RPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQPTSVIATH 492 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-----LNYSQLLKVYRALLTE 427 ++ ++ L +++ + + + L ++ AA + KV + LL E Sbjct: 493 FSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQKVLQNLLQE 552 Query: 428 GVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELE 486 V +R+ V I + + + VR L I+ + + V TL+ +L+ Sbjct: 553 EVPIRNSVAILEGVADAIAIMG-SEQATELVRSRLASQISQMVADQDRNIRVITLSQQLQ 611 Query: 487 NLLTNVVNQAQ--QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 N + + QG +++ S N++ + + V + + D V L P +R Sbjct: 612 NNIAQNLANTGNLQGSQMIAMSFESMQNLIKNIKDAVKLVSD---SGVDDIVFLTSPIIR 668 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L ++ V++ E+ ++ + ++ Sbjct: 669 RPLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 180/591 (30%), Positives = 286/591 (48%), Gaps = 29/591 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKGAER++EV+ARF+LDAMPGKQM+IDAD AG+I+ + RR + Sbjct: 123 FSIVTIVQFIVITKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ IN+IGG+ IG+ K +LS + Y ++++GD Sbjct: 183 RESQLYGSFDGAMKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 LV QIP+LL+S A +VTR+S ++ HD+ ++LL+S VL ++G+ ++ ++PG Sbjct: 243 ALVGQIPALLISMGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGF 302 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLET--------LTRTITETSEQQVSWET 237 P FL SA LGF W + +A AE + T ++ Q +T Sbjct: 303 PLPVFLTVSASLGFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDT 362 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIR---------I 288 L P+ + L + + N T + + D G+LLP I + Sbjct: 363 AFLGHPLVVILPHACAHTPSLSPQNLAT----SLHARVFDEVGLLLPTIVVGFAAADAIV 418 Query: 289 RENFRLKPSQYAIFINGIKADEADIPADKLMALPSSE-TYGEIDGVQGNDPAYGMPVTWI 347 + + I IN + A I D + + S+ G V G P W+ Sbjct: 419 SDAQDDARQRVVIRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV 478 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 AQ A+ ++G + + ++ + F + L + L S P L ++ Sbjct: 479 M-AQPAQLQDIGIAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKE 537 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + + +L ++ R LLTE V++R++ I L T KD I+L VR+AL R I+ Sbjct: 538 VYRQIPVQKLCEILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYIS 597 Query: 468 HPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQ 527 H R + V L E E + + G + L P + N+ + Q Sbjct: 598 HRIARNGHMKVIVLTPEFEEKVRQGIKHTSTGTFLNL-----TPTVANELVDRITVALNQ 652 Query: 528 MKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + A +D VLL +R PGL V+S+ EV D +EL ++G + Sbjct: 653 LHAVRRDFVLLASMDVRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 195/569 (34%), Positives = 308/569 (54%), Gaps = 18/569 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF V++ G+ RI+EV ARF LDAMPGKQMAIDADLN+GLI++ QA+ RR ++ EA+FYG Sbjct: 143 NFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQAKKRRLEIHKEAEFYG 202 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKF+RGDAIAG++I+ +N+IGG+ IGI +Y +S A + Y ++TIGDGLV+QIP Sbjct: 203 SMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIKIYSILTIGDGLVSQIP 262 Query: 134 SLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 SL++S A+ II+TR + + +I + Q+ + V++ ++ I ++PGMP+ FL Sbjct: 263 SLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIFCFFGLIPGMPNFIFLF 322 Query: 193 FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 FS L W ++ + + K L+ R +SW I + + + L Sbjct: 323 FSVLFFILSWYINYRKNINKNFSKILKFKKRKKI-----DISWNDIEFEDLLRIELSSIF 377 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 L + + N L ++++ +R+ I+ G LLPEI I N +L QY IFI G++ Sbjct: 378 FKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYKIFIKGVELFSGF 437 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 I DKL+ + I G++ D + PV WI K LN +DS +I + Sbjct: 438 IFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKIVFLDSNVLIIKN 497 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSL 431 NKI+R+ + +LF + + QL +R+S P+L + L ++ + + LL + +S+ Sbjct: 498 FNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQNILQNLLKDDISI 557 Query: 432 RDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLL 489 +DI TI L+ S+ K + L +R+AL+ IT F K + + V L+ EN+L Sbjct: 558 KDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYINVIGLSTNFENIL 617 Query: 490 TNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 V + ++P + K VLLV P++R LL+ Sbjct: 618 LKFVGNNKN---------QIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVLLSN 668 Query: 550 YARLFAPGLHVLSYNEVPDELELKIMGAL 578 + L VLS++E+ + +KI + Sbjct: 669 FFLNCNIILPVLSFSEISENRVIKITQFI 697 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 169/576 (29%), Positives = 273/576 (47%), Gaps = 15/576 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EVSARFTLDA+PGKQMAIDA+L I+Q +A+ RR + Sbjct: 121 FLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQMAIDAELRNNHIDQHEARRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++++ IN++GG+ IG+ ++S DAA Y L+TIGD Sbjct: 181 QESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGISIGLLSKDMSLDAAMHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 L++QIP+LLLS AA IVTRV+ + D+ +QL AS L A ++ ++ VPG Sbjct: 241 ALISQIPALLLSITAATIVTRVNGPSKLKLGADIVSQLTASTQALRLAACVLLLMGFVPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P PF++ + L + A + Q PI Sbjct: 301 FPLPPFVILAVLFAAASYVKVGAKGDEPAAKTGANVTASAPAPAQAQAQKQAAHAEALPI 360 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 +L L L +DK + L Q I V +S G+ +P I R + L SQ+ I ++ Sbjct: 361 ALFLAPNLTHSIDKDE---LEQSIARVSTSVSADLGITVPRIPARIDQNLSKSQFRIDVD 417 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + + I + + L E+ G+ DP WI+ A G Sbjct: 418 SVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPETAR--VWIEERHAAALKAAGIGHH 474 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 ++A ++ + Y L + QL R+ L +++ ++ +V R Sbjct: 475 RPVEILALRLHSTLTRYAQRLVGIQETRQLLARMEQEYADLVKEVLRTATIPRIAEVLRR 534 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 LL EG+ +R+ + L S ++ +LL VR AL+R I + + + + Sbjct: 535 LLDEGIPIRNTRLLLEALAEWSEREQNAVLLTEYVRAALKRQICFRYANAHRVVAAFIIE 594 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E E ++ V + G ++LD + S Q+ + + PV+L Sbjct: 595 RETEEIVRVSVRETAVGPYLVLDDWQ-----SEKLLSQFRQIHSTIAQSQSQPVILGSMD 649 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + L VLSY ++ E ++ +G++ Sbjct: 650 IRRFVRGFLTRNGLDLPVLSYQDLASEFTVQPIGSV 685 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 160/575 (27%), Positives = 284/575 (49%), Gaps = 9/575 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG+ER++EV+ARF+LD MPGKQM+IDADL AG+I+ A A+ RR + Sbjct: 118 FSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILE 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ ++ +S A Y ++TIGD Sbjct: 178 RESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP+LL+S +A IVTRV D+ ++ ++ +Q+ +P VL + + + ++PG Sbjct: 238 GLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGF 297 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P F L + L + E T T + S I ++ IS Sbjct: 298 PFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAIS 357 Query: 246 LS-LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 + L+ +K N + I +R GV LP I R + LK + IN Sbjct: 358 SETVPLILLFAENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLIN 417 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVT-WIQAAQKAKALNMGYQVI 363 ++AD +I DK+ + + G+ +Y V W+ + N+ ++ Sbjct: 418 EVRADSFNIYFDKV-CITDENGDIDALGIPVVSTSYNERVISWVDVSYTENLTNIDAKIK 476 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 + +++ + + I ++F + + ++ + P L +++ + ++ +V + Sbjct: 477 SAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRHVTIQRISEVLQR 536 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNN 483 LL E +S+R++ I L + KD I L VR +L R I E+ V L+ Sbjct: 537 LLGENISVRNLKLIMESLALWAPREKDVITLVEHVRASLSRYICSKIAVSGEIKVVMLSG 596 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 +E+ + + Q G + +D + ++ T+ +++ A K+ VLLV + Sbjct: 597 YIEDAIRKGIRQTSGGSFLNMDI-----EVSDEVMETLAHALRELRNAKKNFVLLVSVDI 651 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + R + V+SY E+ + + ++ + Sbjct: 652 RRFVKRLIDNRFKSILVISYAEIDEAYTINVLKTI 686 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 165/578 (28%), Positives = 284/578 (49%), Gaps = 33/578 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + F+V+TKGAER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ R V Sbjct: 120 FTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYG+MDGA KFV+GDAIAG++I+ +NL GGV IG++++++ AA + ++++GD Sbjct: 180 KESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRV----SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 LVAQIP+L++S A ++VTRV ++A D+ Q+ + + +M V+A++ Sbjct: 240 ALVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAII 299 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PG P L FL + L W++ K+ K ++ S P E Sbjct: 300 PGFPALVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMG--------ADLSNSQNISPGAE 351 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAI- 301 P+ L+L + + + +TQ+I +R + +G+ LP+I + +K + AI Sbjct: 352 PLILNLSSNIYS-------SDITQQIEVMRWNFFEESGIPLPKIIVNP---VKNNDSAIE 401 Query: 302 FINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQ 361 F+ ++ D D + + + VQ + + Q+ L Sbjct: 402 FLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDV 461 Query: 362 VIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVY 421 + I + K+V S + + L + + L ++L L S+++ + Sbjct: 462 YATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDIL 521 Query: 422 RALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYT 480 + L+ E VS+RD+ TI L+ ST KD ++L VR+ALRR I + L V+ Sbjct: 522 QRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWL 581 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 + +++EN L + Q G + + P Q + + V+L Sbjct: 582 IGSDIENELRESIRQTSSGSYLN-----ISPERTEQIIGFLKNIMNPTGNG----VILTA 632 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + P + VLS+ EV + +ELK++G + Sbjct: 633 LDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTV 670 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 167/588 (28%), Positives = 297/588 (50%), Gaps = 22/588 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + F+V+TKG+ER++EV+ARF+LD MPGKQM+IDADL +G+I + Q RRK++ Sbjct: 118 FSIVTIVQFLVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELG 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ + LS A Y L+TIGD Sbjct: 178 QESQLYGSFDGAMKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLVAQIP+LL+S +A IVTRV ++ + + N+LLA L + F + +PG Sbjct: 238 GLVAQIPALLISISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGF 297 Query: 186 PHLPFLLFSALLGF----TGWRMSKQPLAAEAEEKSLETLTRTITE-------TSEQQVS 234 P FL+ S +LG W+ SK+ E E+ + + + + Sbjct: 298 PTPVFLILSVMLGVYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEE 357 Query: 235 WETIPLIEPISLSLGYKLVALVD-KAQGNPLTQRI---RGVRQVISDGNGVLLPEIRIRE 290 + L E I+LS L ++ + P +I + +++ G+LLP+I I Sbjct: 358 VDNSLLTENITLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHY 417 Query: 291 NFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAA 350 + ++ + I IN +KA E + P ++ + + WI+ Sbjct: 418 SDKIDDDKIIILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERD 477 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA 410 ++K +GY+ S S + ++ I + + + ++L +AP L ++ Sbjct: 478 DESKLAPLGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECYR 537 Query: 411 ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF 470 ++ ++ V + L+ E + +R+I TI LV + KD +LL +R L R I++ F Sbjct: 538 QVSIQRINDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISYFF 597 Query: 471 VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 + L+N++E ++ + + Q+ G + L +P L+ + V + +K Sbjct: 598 STDGKFNAIILSNDMEEIIRSGIRQSSSGTLLNL-----EPAELDMIIEKISMVIDDIKY 652 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +D + L +R + + P + VLSY+E+ ++E+ ++ ++ Sbjct: 653 I-QDYIFLTSIDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 211/574 (36%), Positives = 330/574 (57%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+V+TKG+ RI+EV+ARF+LDAMPGKQMAIDADLNAG+INQ QA+ RR+ ++ Sbjct: 133 FAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMINQEQAKKRRELIS 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFVRGDAIA ++I+ INLIGG+ +G+F++ +S +A Y L++IGD Sbjct: 193 AEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSSAAHTYTLLSIGD 252 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSV-LYTATGIMFVLAVVPGM 185 GLVAQIPSL++S AA ++V+R SD+ ++ H V QL L I+ + ++PGM Sbjct: 253 GLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTAIILGITGIIPGM 312 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 PH FLL++ L G W + ++ EAE+ S T E+ + + +EPI Sbjct: 313 PHWAFLLYALLTGSI-WYVLQRSKVREAEQVSATTAAEAPA-VVEEPIDARVLKRVEPIG 370 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L++GY+L+ L+ K L +R+ +R+ IS+ G +LP I + ++ L+P Y I I+G Sbjct: 371 LAIGYQLIPLMQKD--GELQKRLNLLRRRISESAGFVLPAIHVTDDLTLRPGGYRIEIHG 428 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 I ++ AD+L+A+PS I G + DP YG WI + A +GY V+D+ Sbjct: 429 IGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDAELLGYTVLDA 488 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRAL 424 A+V+ TH++++++ ++ D+F +L + ++ +L + + + +L KV R L Sbjct: 489 ATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTAPKLTKVLRDL 548 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV----RKQELTVYT 480 + E VSLRDI I L L +R L R I + R L Sbjct: 549 VREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGRDRGAPLQAAV 608 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 ++ E++++L A Q + ++P++L + Q QM+ PV+LV Sbjct: 609 MSPEMDSVL----QTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMRPVILVR 664 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 +R L+ + R + VL + EVP E+++K Sbjct: 665 DAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 167/569 (29%), Positives = 286/569 (50%), Gaps = 25/569 (4%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + FIV+TKG+ER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ +R V E+ Y Sbjct: 126 VQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY 185 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 GAMDGA KFV+GDAIA ++++ N+IGG+ +G+ ++N+SA A Y ++++GDGL+AQI Sbjct: 186 GAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI 245 Query: 133 PSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPF 190 PSLL+S A +IVTRV ++A+++ Q+ P+ L A +MF+ A++PG P L F Sbjct: 246 PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF 305 Query: 191 LLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGY 250 +++ + +Q A A E T S+ P P+ L LG Sbjct: 306 GTLGSVVLGASLWLKRQQKRASA---QGEESHFTDAGKSDTANVDNMAPGAVPLILYLGA 362 Query: 251 KLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADE 310 + + + + ++ +R + GV LPEI+++ + + + + Sbjct: 363 DVPI-------HGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQ 415 Query: 311 ADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + + + + S I + P + WI+ +A G V + A Sbjct: 416 LQLVPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPA 472 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVS 430 + K++ Y + + L + + + L ++L L+ ++ ++ + L+ EG+S Sbjct: 473 YVMGKVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGIS 532 Query: 431 LRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNELENLL 489 +RD+ TI LV KD I+L VR+ALRR I F + V + +EN++ Sbjct: 533 VRDLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVI 592 Query: 490 TNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 + Q+ G LD + Q Q + ++EQ+ + VLL +R L + Sbjct: 593 RESIRQSTAGSYSALD--------MAQTQQILTCIQEQLPPE-QTCVLLTSLDVRRYLRK 643 Query: 550 YARLFAPGLHVLSYNEVPDELELKIMGAL 578 VLS+ E+ D+ E+K++G + Sbjct: 644 IVERELFSTPVLSFQELGDDAEIKVIGQV 672 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 150/573 (26%), Positives = 266/573 (46%), Gaps = 26/573 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG+ER++EV+ARF LD MPGKQM+IDADL G+I+ A+ RR + Sbjct: 118 FAIVTVVQFIVITKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLE 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGA DGA KF++GDAIA +++ +N IGG+ +G+ ++++ A + L+TIGD Sbjct: 178 RESQLYGAFDGAMKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV QIP+LL+S +A +IVTRV+ +G ++ ++ QLL +P VL + + ++PG Sbjct: 238 GLVGQIPALLISISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGF 297 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P F++ + LG +Q +++ E + +I +S Sbjct: 298 PLPVFVMLAMALGTLLLMRQRQTRVV------PLPAAADYAGGYPERIMPEALAVILQVS 351 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 + +L + L +R +R GV LP + + + +N Sbjct: 352 RANYARL-------EKEQLCER---LRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNE 401 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 I+AD + D L + + D + W + + L G + + Sbjct: 402 IRADVFTLHFDMLRRVIPGDRPCPPDVTLHQE----QEAVWAALDDRERLLATGCVLRPA 457 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 + ++ ++ + F + L +++ S AP L +++ ++ ++ + LL Sbjct: 458 VDELYHCFAVMLTHHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHATVQRIAELLQRLL 517 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 E +S+R + I + + KD L VR AL R I H F L V L++E+ Sbjct: 518 MERISIRHLKLIMEAMALWAPREKDVSALVEHVRCALARYICHQFAADNLLRVIMLSSEV 577 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L + ++ G + L P + + E + A +D VLL +R Sbjct: 578 EETLRDSLHTTSAGTFLNLG-----PQVSEELMELFTSALESLPIAQRDIVLLAAADIRR 632 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + L VLS+ E+ + + + ++ + Sbjct: 633 FIKSLIQHRFRDLEVLSFGELTESVTVNVIKTI 665 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 200/576 (34%), Positives = 314/576 (54%), Gaps = 18/576 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ IN +VVTKGA R+SEVSARFTLDA+PGKQMAIDADL AGL+ +A+ RR+++A Sbjct: 119 FLILMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIA 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFV+GDA+A ++IL IN+I G+ +GI + L+A A + YV + +GD Sbjct: 179 TEADFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 LVA +P+LLLS AAA+IVTRVSD D+ + QL A P + I+FV+ +P MP Sbjct: 239 ALVASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMP 297 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L S+ + +R+ K A + + + ++ E + +++ Sbjct: 298 QSIILPLSSGTFYLWFRLRKNHEARKE-------MPEPEAKPDPSHITIEEVTDQTLVTV 350 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY L++L D +G L R+ G+R+ + G ++P+ RI ++F L P Y I + G Sbjct: 351 QLGYGLISLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGA 410 Query: 307 KADEADIPADKLMALPSSETYGE--IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 I L+A+ + E G + G+ DP++G P WI+ + A+ GY +D Sbjct: 411 TLGGGKINPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVD 470 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 SVIAT V++++ + DL D + L L + +L + + L+ + L ++ R+ Sbjct: 471 PESVIATQVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRS 530 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLN 482 LL +G+SLR + + + + ++ T +H L VR L I +L V TL Sbjct: 531 LLADGISLRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLA 590 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 LE ++T + G + ++P++ + + Q A P L+V P+ Sbjct: 591 ARLEEMVTGGLQDPSSGEII------IEPDLARSIGERIAAIIGQRDPAATRPALIVQPR 644 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L+ RL AP VLS NE+P ++++ + Sbjct: 645 ARRALSALLRLRAPQCLVLSINELPVAQPIEVIAVV 680 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 517 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 161/579 (27%), Positives = 278/579 (48%), Gaps = 18/579 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + +NF+V+TKG+ER++EV+ARF+LD MPGKQM+ID+DL AGLI QA A+ RR D+ Sbjct: 121 FLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQRRSDLE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+ DAIAG++I +NL+GG+ +G+ + +S A Y ++++GD Sbjct: 181 KESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYTILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRV----SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 GLVA IPSL++S AA +IVTRV +D + A D+ L + + L + F+ A V Sbjct: 241 GLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFCFLFAFV 300 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PGMP FL SA L + +S++ +AEE + T + S + + + I Sbjct: 301 PGMPSYVFLATSATLLCGWYFISRK--TDKAEEVDVSTQFSDMLSASGKSIKMDDILHTN 358 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 + L +L ++ N + R R + G+L P + E S + Sbjct: 359 TFA-PLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFP---LFEFINHTESFVEFY 414 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQ---GNDPAYGMPVTWIQAAQKAKALNMG 359 + G+ A I +L + G++ D G QK Sbjct: 415 VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKTLLDQHK 474 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 + + + + + + ++ + LF ++ + L ++L L +++++ Sbjct: 475 LEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKELERVLPVTKVVE 534 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVY 479 V + LL E VS++++ +I L+ +D +++A VR L I H +++L V+ Sbjct: 535 VLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQHTHERKLKVF 594 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 L E E L+ G V +DS + LN+ + + P ++ Sbjct: 595 MLGVEFEQLIRESSRSDGNGSFVDIDS-----SSLNELIEIVEEQCRPHLVGNYVPAIVC 649 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + + + VLS+ E+ +E++++G + Sbjct: 650 SMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNI 688 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 206/577 (35%), Positives = 308/577 (53%), Gaps = 14/577 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+N +A+ RR DVA Sbjct: 125 FAILVIINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVA 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYGAMDGASKFV+GDA+AG++IL IN++GG+ IG ++ L A + YVL++IGD Sbjct: 185 AEADFYGAMDGASKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIPSLLLS A AIIVTRVS D++ + Q+ +M +L + PGMP Sbjct: 245 GLVAQIPSLLLSIATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQP---LAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 +L FLL W + A + + ++ E + P Sbjct: 304 NLLFLLGGVAAAAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAP 363 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 ISL +GY L+ L G L RI +R+ +S G ++P +RIR++ L P+QY I + Sbjct: 364 ISLQIGYGLIPLAGDN-GGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRV 422 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 E + D+ +ALP + +++G+ DP++G+ +WI Q A+A + V+ Sbjct: 423 GQAILAEDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVV 482 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYR 422 + SVIATH+++I+ + L DD+ L + L TAP L + + + L V + Sbjct: 483 EPESVIATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLK 542 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTL 481 ALL + + + D+ I L + + + +A +R AL + Q L + TL Sbjct: 543 ALLADRIPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITL 602 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 +LE LL Q + + VD + + + + E GK ++V Sbjct: 603 EPDLEQLLLRSRRQGDE-------MLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQ 655 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LR A + R P V+ E+P+ ++++G + Sbjct: 656 PLRRAFAAFVRPHLPDAVVIGMGELPEARRVEVLGTV 692 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 189/591 (31%), Positives = 294/591 (49%), Gaps = 29/591 (4%) Query: 1 MLSRSD-------LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 + R D L + +VVTKGAER++EVSARFTLDAMPGKQM+IDADL AG I Sbjct: 107 FVVRGDYVVGAVVFAILTLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAI 166 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 +QAQA+ RR+D+ E+ +GAMDGA KFV+GD IAG++I+A+NL+GG IG+ + + Sbjct: 167 DQAQARRRRRDLERESQMFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLA 226 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLY 170 A + L+ IGDGLV+Q+PSL ++ AA ++VTRV+ + ++ Q L+ Sbjct: 227 EAASTFALIAIGDGLVSQVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLW 286 Query: 171 TATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSE 230 G+ LA++PGMPH+ FLL + LG G +S+ + E+ Sbjct: 287 VVAGLCVALALMPGMPHVTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGA 346 Query: 231 QQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR- 289 S + + P++L + L L + + + + GVR + GV +P IR+R Sbjct: 347 PPESAASPVGVSPLTLDMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRT 406 Query: 290 ENFRLKPSQYAIFINGIKADEADIPADKLMAL--PSSETYGEIDGVQGNDPAYGMPVTWI 347 + L P +Y + ++ + A + L AL P + ++ +P+ G ++ I Sbjct: 407 QAAYLGPGEYRVLVDEVPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRI 466 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 + + + +++ HV I+R DL D+ L L + AP L ++ Sbjct: 467 PESARVLLETAQVPLRRPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKE 526 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + L V R LL EGVS+RD+ I LV S T D + LA R ALRR ++ Sbjct: 527 ALQKVPLPLLTDVLRKLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLS 585 Query: 468 HPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQ 527 H F L Y ++ E+E +L + + DP + + + QV + Sbjct: 586 HKFAPTGPLYAYLVDPEVEEVLRG----------MGPRGLAPDPERVAEILEGVRQVATE 635 Query: 528 MKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +A VLL P +R L R P + VL+Y E+ L+++ +G L Sbjct: 636 GRA-----VLLTAPDVRRPLRRLCEGAFPDVAVLTYGELDGALQIRPIGRL 681 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 293/582 (50%), Gaps = 17/582 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ FIV GA R +EV+ARFTLD++PGKQM+IDADLN +I + AQ +RK + Sbjct: 118 FTVLIIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLN 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +FYGAMDGA KF++GD I G++IL +N+I G+ +G+ + +S A Y +T+GD Sbjct: 177 METEFYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V QI SL+L+ + IIVTRV + + +LLA V+Y G+ + + Sbjct: 237 GIVNQIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTP 296 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEE--KSLETLTRTITETSEQQVSWETIPLIE 242 +P LPF L + F G R K+ + +E K +E + + + + S+ Sbjct: 297 LPFLPFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKY 356 Query: 243 PISLSLGYKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQYA 300 PI + LG L ALV K G ++ +R+ I G+ +P I ++N +P +Y Sbjct: 357 PIIVELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYI 416 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 I I G KA E + + L+AL + ++D DP +G WI A GY Sbjct: 417 IRIKGAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGY 476 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLK 419 QV++ S++ TH++ +VR + +L + L N L + L E++ ++ S + Sbjct: 477 QVLEPLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQN 536 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDH-ILLAADVRLALRRSITHPFVR-KQELT 477 V + LL EG+S+RD+ TI ++ + ++H + + VR + + I ++ Sbjct: 537 VIKQLLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIY 596 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVL 537 ++ +E L +VVN + QG + D ++ + + +V +Q + G++PVL Sbjct: 597 AALFSDSIE-LDADVVNNSYQGYLLNWDL-----DLETRVVEQVQRVFKQARLMGREPVL 650 Query: 538 LVPP-QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R + R + VL +E+ E+ + + + Sbjct: 651 LTRRKDFRFAIVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 163/597 (27%), Positives = 292/597 (48%), Gaps = 36/597 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + T+ FIV+ KG+ER++EV ARFTLDA+PGKQM+IDADL +GL++ +A+ +R +A Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I IN++ G+ +G+ + +SA A ++ ++++GD Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-----GDIAHDVRNQLLASPSVLYTATGIMFVLAV 181 +V+QIPSLLLS AA +++TRV+D + ++ +QL +S LY A ++ A Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295 Query: 182 VPGMPHLPFLLFSALLGFTGWRMSKQ-PLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VPG P F+L +A L F G+R+S++ ++ A + R + + + +P Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355 Query: 241 IEPISLSLGYKLVA-LVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 + ++G ++ L L + + R + D G+ P + + + L + + Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415 Query: 300 AIFINGIKADEADIPADKLM------------ALPSSETYGEIDGVQGND-----PAYGM 342 + I+ + +PA K M AL + D ++ ++ A G Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475 Query: 343 PVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAP 402 WI A+ V + +IA +R++ P ++ + ++L + +P Sbjct: 476 ATHWIDEP----AVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531 Query: 403 RLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLAL 462 L ++ L +++ V R LL E +S+R++ TI LVA KD ++L VR L Sbjct: 532 GLVAEVLKILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGDL 591 Query: 463 RRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTM 521 R + H + + L+ + + E + + Q G + L ++++ QS + Sbjct: 592 SRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDAS-RLVDRIQSLV 650 Query: 522 PQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 D L+ +R + R L V SY E+ + +EL+ +G + Sbjct: 651 GANART------DIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRV 701 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 177/574 (30%), Positives = 282/574 (49%), Gaps = 20/574 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ + F+VVT GA+R++EV+ARFTLD+MPGKQM+IDADLN G+I++ QAQ RR + Sbjct: 117 FFILVVVQFLVVTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIE 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA+KFV+GDAIA ++I+ IN+IGG+ IG+ + L A Y L T+GD Sbjct: 177 KEANFYGAMDGATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIPSL+++ II+TR + G++A + Q++ P L ++ A +PG+P Sbjct: 237 GIVTQIPSLIIAVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLP 296 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L +L G+ K+ E+ E T T E + I P L Sbjct: 297 SLTLILVGITFALFGYFAHKKKQLKLIEKTFREFENTKKTSTQESLLQVAFSSQIWPQIL 356 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 A+ + ++ + G+ LPE+ ++ LK +Y+I ++ I Sbjct: 357 ------------AEETEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNI 404 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + DK+M + + G+ +PAYG+ W+ A + G V++ Sbjct: 405 EFASGVLHPDKMMVIDPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPI 464 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SV+ TH+ + V+S+ + + QL L ++ L + + +++ L+ Sbjct: 465 SVLMTHITEFVKSHSAEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLV 524 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNE 484 E V L + I VL + KD LL VR LR +T + L + ++ Sbjct: 525 QEKVCLHNANHIFEVLADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPL 584 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L N V+ + + P L+ E+ + G +PVLLV P +R Sbjct: 585 LERALLNG------AANVITKGLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIR 638 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + P LHV+S NEVP ++L +G + Sbjct: 639 RPLWQLLNRTVPLLHVISVNEVPHHIKLNSLGVI 672 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 165/586 (28%), Positives = 275/586 (46%), Gaps = 24/586 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV ARF LDAMPGKQM+ID + +G I+Q +A+ +R D+ Sbjct: 123 FLIITIAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA KFV+GDA+AG++I+AINLIGG+ IG + L+ A Y L+T+GD Sbjct: 183 RESQFYGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN---GDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL++QIP+L+++ AA +VTRV D++ ++ QL AS L A I+F +VP Sbjct: 243 GLISQIPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVP 302 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAE--------AEEKSLETLTRTITETSEQ-QVS 234 G P + F + L G + K+ A E E + + R + + + Sbjct: 303 GFPLIVFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHIAGNLPGA 362 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRL 294 + + ++L++G L + +R + + I + G+ +P I + RL Sbjct: 363 GSDLGMAHRLTLTMGEGLGERLPPP---LFAERTESLAEAILEDLGIRVPAIGRLTDARL 419 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDP-AYGMPVTWIQAAQKA 353 +++ I G+ + + D LMA + + P G+ + WI + A Sbjct: 420 ATAEFRIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAA 479 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 G ++A V+ T V +++R Y PD + + L RL T L +++ ++ Sbjct: 480 ALDAAGVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVLDVVS 539 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK 473 +L V R L+ E V + ++ I + ++ LA VR L R I Sbjct: 540 AQRLSDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADS 599 Query: 474 QEL-TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 + + Y L E+ L V + + V + + + +E+ A Sbjct: 600 NRIVSAYLLTRPFEDELRAAVEKNSG------PAGAVPERLAAPILEELKKRREK-AGAQ 652 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +L LR + + VLSY E+ E ++ +G + Sbjct: 653 SRAAILTSMDLRRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYI 698 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 165/576 (28%), Positives = 291/576 (50%), Gaps = 18/576 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 FIV G+ R +EV+ARFTLDA+PGKQMAIDADLN LI + +A+ +R + E +FYG Sbjct: 120 QFIV-ANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYG 178 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGA KFV+GD + +++ +N++ G+ +G+ + LS A +Y +TIGDG+V+QI Sbjct: 179 AMDGAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIG 238 Query: 134 SLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 SLL++ +A +IVTRV + ++A + +L+ + V+YT + + ++ V +P +PF+ Sbjct: 239 SLLMAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFV 298 Query: 192 LFSALLGFTGWRMS---KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSL 248 +LG G+R K+ E E++ + T + +E ++ P+ + L Sbjct: 299 GIGVVLGIIGYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVEL 358 Query: 249 GYKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQYAIFINGI 306 G + ALV K G ++ +R+ I G+ +P I ++N +P +Y I + G+ Sbjct: 359 GLNIAALVKQKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGV 418 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A L+AL + ++D DP +G WI + A YQV++ Sbjct: 419 AVASGVLKAGHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPL 478 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLKVYRALL 425 S++ TH++ ++R + +L I L + L+ L +++ ++YS + V R LL Sbjct: 479 SILITHLDVVLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLL 538 Query: 426 TEGVSLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFV-RKQELTVYTLNN 483 EG+S+RD+ TI ++ T+ D + A VR + + I + ++ L + Sbjct: 539 KEGISVRDLPTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQD 598 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP-Q 542 +E + T +VN G + P + + + G++PV+L Sbjct: 599 SIE-MDTEIVNTPYYGYALNWALDKELP-----IIQKVRDTVNKAQLTGREPVILTRRKD 652 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R R + + VLS +E+ E E++ + + Sbjct: 653 FRFGFVRVLERYQLDVPVLSISELSPETEVEQIALI 688 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 170/576 (29%), Positives = 300/576 (52%), Gaps = 22/576 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA R++EV ARF LD MPGKQ+AIDAD++AG I+ A+A+ RR+ +E F+G Sbjct: 132 NFIVITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 ++DGASKFV+GDA+AG++I A+NLI G+ IG+ +++ AF+ Y ++T+GDGLV QIP Sbjct: 192 SLDGASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIP 251 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 ++++S AAA+++ + + + Q P+ L T +MF+ A++PG+P +PF L Sbjct: 252 AVIISIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLG 311 Query: 194 SALLGFTGWRMSKQ-PLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 + +LG + ++ P + E E+K R ++ + I ++ I ++ L Sbjct: 312 AMVLGGAALYLYRKTPDSPEGEDKPAAQTDR------PREATMGDILDVDEIHVTFSTDL 365 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 V+ + A G L RI+ +R I+ GV+LPEIR+ ++ L + YAIF++G++ Sbjct: 366 VSSILDAAGG-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQ 424 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 + D+++ L E + E +P YG P WI+ +++ + +G + S V+ATH Sbjct: 425 LYPDRILLLLPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATH 484 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPR--------LAEDL-SAALNYSQLLKVYRA 423 + ++V+ + L + +L L++TA L E+L + L+ + R Sbjct: 485 LLEVVKGNLARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRL 544 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 LL E VS+R++ I + + ++ + VR L I R + + L Sbjct: 545 LLEERVSIRNLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLA 604 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E E + + G V + P++ + + + +G +P ++ + Sbjct: 605 QEWEQIFAANSIGREDGAA----DVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVR 660 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L+ + VLS+ E+ ++G + Sbjct: 661 RRRFLSTVLASKGLQVPVLSFEELGKTNRPSLVGVV 696 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 153/580 (26%), Positives = 276/580 (47%), Gaps = 63/580 (10%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL G + +A+ +R +A Sbjct: 121 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLA 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ +G+ + ++A A ++ ++++GD Sbjct: 181 MESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-----GDIAHDVRNQLLASPSVLYTATGIMFVLAV 181 +V+QI SLL+S AA +++TRV++ + D+ QL ++ L A+ ++ A Sbjct: 241 AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAF 300 Query: 182 VPGMPHLPFLLFSALLGFTGWRM-SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VPG P + FLL +A +G G+ + KQ + +++ L + +R + + Sbjct: 301 VPGFPAVLFLLLAAAVGAGGYTIWRKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDF 360 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 P+S+ L +L AL+D A+ L Q I R+ + + G+ P I I + L+ QY Sbjct: 361 ASPLSMRLSPQLAALLDPAR---LDQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYE 417 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 + I+ + A++ +D +QAA +A++ Sbjct: 418 VLIHDVPETRAEL-------------------ENTDD---------MQAALARQAISP-- 447 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 + + + + +++ P L +++ A+ ++ V Sbjct: 448 ----------------LHARAHLFVGIQETQWMLEQVAVDYPGLVAEVNKAMPAQRIADV 491 Query: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTVY 479 R LL E + +R+I +I LV KD ++L VR L R + H +L Sbjct: 492 LRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAV 551 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 L++ +E L+ + G + L P NQ + ++ ++ Sbjct: 552 MLDHAVEQLIRQSIRATAAGNFLALP-----PEQANQLVEQVERIVGDHAQ--HPLAVVA 604 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 +R + R L V S+ E+ E++L+ +G ++ Sbjct: 605 SMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPIGRVV 644 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 169/592 (28%), Positives = 280/592 (47%), Gaps = 30/592 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV+ARFTLDAMPGKQM+ID DL G I+ +A+ RR + Sbjct: 123 FLIITVAQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++IL +NL+GG+ IG+ + + A Y L+T+GD Sbjct: 183 RESQMFGAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG---DIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL+AQIP+LL+S AA +VTRV+ +G D+ ++ QL AS L I+ + ++P Sbjct: 243 GLIAQIPALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLP 302 Query: 184 GMPHLPFLLFSALLG---FTGWRMSK-----------QPLAAEAEEKSLETLTRTITETS 229 G P L F+ +A+LG F WR + Q AE + + + + Sbjct: 303 GFPLLVFVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAA 362 Query: 230 EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR 289 E + P + LS+G L + A PL QRI + I GV +P + Sbjct: 363 EDALESAERPRDSQVLLSIGTGL---AEAAPLQPLRQRIEALCHDIRINLGVEVPLPEVY 419 Query: 290 ENFRLKPSQYAIFINGIKADEADIPADKLMALPS--SETYGEIDGVQGNDPAYGMPVTWI 347 + L ++ + + G+ E + L+ ++ + P P W Sbjct: 420 LDRSLPVDRFQVELEGVPVSEGEFSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWA 479 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 + + G + + V+ +++ +R Y D + + +L L ++ Sbjct: 480 GREHADRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKE 539 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + L ++ + R L++EGVS+R + +V ++ D L +R L R I+ Sbjct: 540 VLRILPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQIS 599 Query: 468 HPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 H + + ++ + L LE L + + ++ + D + +L Q + + E Sbjct: 600 HQYADRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDD--IGRTVLVQLRRLCDMLPE 657 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 VLLV +LR + R L VLS+ E+ E L+ +G + Sbjct: 658 -----HDLTVLLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTV 704 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 162/578 (28%), Positives = 275/578 (47%), Gaps = 39/578 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KGAER++EV+ARFTLDAMPGKQ++ID+DL AGLI++ +A+ +R+ + Sbjct: 129 FLIITVVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLE 188 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIAG++I+ INL+GG+ IG+ + + A Y ++TIGD Sbjct: 189 VESQLHGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGD 248 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD---IAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIP++L + AA ++VTR + + D + + Q+ P VL + F + VP Sbjct: 249 GLVSQIPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVP 308 Query: 184 GMPHLPFLLFS-ALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 G P L FL+ S LLGF WR + + E+ V+ + I Sbjct: 309 GFPKLVFLMLSVVLLGFAAWRYRHHHPVL----RRAFKVPEGERPAEEKTVNEDEIAPPA 364 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 P+ L L L A + RI + + + + GV LP A+ Sbjct: 365 PLQLELAPSLAAAFGEHAA---RTRIVEIARRLREEYGVPLP-------------VPALK 408 Query: 303 INGIKADEADIPADKLMALPSSETYGEI-------DGVQGNDPAYGMPVTWIQAAQKAKA 355 I+ + + +L A + +G + G+ A +P + A + Sbjct: 409 ISPDLDGDDGLGGYRLTAFGARLAFGRLSPNAQFRPARAGDANAPKLPGFFPPLAGEWTG 468 Query: 356 LNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYS 415 G + D + ++ H + + + + L R+ P L +++ + Sbjct: 469 -QAGADIRDGLATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEMLRVVAPQ 527 Query: 416 QLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQ 474 ++ V R L+ EGV +R++ + KD +LL VR+AL+R I + ++ Sbjct: 528 RVADVLRRLVEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGER 587 Query: 475 ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 + V ++ ELE+ L V A ++ + P + + + + + + G Sbjct: 588 TMQVLLIHPELEDRLRQSVRVAGGATQLA-----ISPELAGRLGAEVRSHLAR-QGEGIK 641 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELEL 572 PVLL +R L + + L VLSY E+ +L + Sbjct: 642 PVLLCSLDVRRHLRKLLEIDFFELPVLSYQELAPDLRI 679 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 162/583 (27%), Positives = 280/583 (48%), Gaps = 25/583 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + +NF+V+TKG+ R++EVSARF LD++PGKQ+AID DLN+G I+ +A+ RR Sbjct: 124 FAVITVVNFMVITKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQ 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E F+G++DGASKFV+GDAIAG++I INL G+ G+ + + A Y +TIGD Sbjct: 184 REISFFGSLDGASKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+L+ S AAA++++R A + Q L++ V + M + +VPGMP Sbjct: 244 GLVSQIPALITSMAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L F +A+LG W + + E+ + Q + + I + Sbjct: 304 TLVFFGLAAVLGVAAWFIRARQDKTRPED----AAPVESHAAASAQTRIGDVLDTDEICV 359 Query: 247 SLGYKLV-ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 +G L+ + +D +G L QRI +R I+ G++LP++RI + + +Y + + G Sbjct: 360 EIGAGLILSALDPVRG--LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQG 417 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + ++AL + E+DG +P YG WI + +A G V+ Sbjct: 418 VVRGKGVLRPQGVLALGAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTP 477 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRL---SSTAPRLAED------LSAALNYSQ 416 V++TH+ ++V++ +P L + ++ L S + + Sbjct: 478 MEVLSTHLMEVVKTNLPALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEM 537 Query: 417 LLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQE 475 LL V R LL E +S+R++V I + + + VR LR IT F+ Sbjct: 538 LLAVLRGLLEERISVRNLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGY 596 Query: 476 LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 L + L+ + E + ++ + G + + + + Q+T+ + G + Sbjct: 597 LELLQLHPQWEAEIARSEAESARAGNGAI--PQIQKRLADALQATLSGL-----PPGIEV 649 Query: 536 VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 VL VP R L+ VL +E+ ++++ G + Sbjct: 650 VLAVPDHRRRLVRMMLSSAGIATPVLGLDEIDPGAQVRLRGTV 692 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 271/582 (46%), Gaps = 20/582 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KG+ER++EV ARF+LDAMPGKQM+IDADL AG+I+ +A+ RR+ + Sbjct: 152 FLVIAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLE 211 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I IN++ G+ +G + + A Q+Y ++T+GD Sbjct: 212 QESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGD 271 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD----IAHDVRNQLLASPSVLYTATGIMFVLAVV 182 G+ +QIPSLL+S AA I+ TRV+ + + QL A P L A ++ VV Sbjct: 272 GMASQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVV 331 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PG P F L + LG K+ A + T+ + + Sbjct: 332 PGFPKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTS 391 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 I++SL L ++ AQ L + + + G + P I + ++ Y I+ Sbjct: 392 LIAVSLSDDLRTTLNLAQ---LQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIY 448 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 + + A + L+ + + WI+ A + Sbjct: 449 LQDVLAAHGALKPGWLLWDGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKW 504 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + S +A HV ++VR + +L + L + + P L +L+ + ++ +V R Sbjct: 505 LTSEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELTRLVPLQRVTEVLR 564 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVR-KQELTVYT 480 LL E V +R++ I L+ + D I L VR+ LRR IT ++L V Sbjct: 565 RLLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVL 624 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP----- 535 L+ + + V + +QG + L S + ++ Q ++ + + +P Sbjct: 625 FEQNLQERIESAVMRTKQGNFLALSS-AIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPR 683 Query: 536 -VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 ++V R + + P L VLSY EV ++++L +G Sbjct: 684 LAVMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVG 725 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 169/580 (29%), Positives = 279/580 (48%), Gaps = 24/580 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKGA+R++EV ARFTLD MPGKQM+IDAD+ AG ++Q A+ R+++ Sbjct: 119 FLIITVVQFLVITKGADRVAEVGARFTLDGMPGKQMSIDADVRAGNMDQLDARHARQNLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA +GAMDGA KFV+GDAIAG++I INL+GGV IG+ + + A Y L+T+GD Sbjct: 179 REAKLFGAMDGAMKFVKGDAIAGLVITVINLVGGVAIGMAQRGVGFGEALSLYALLTVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLVAQIP+LL+S AA +VTRV++ D+ ++ Q +A+ + A I+ + +VPG Sbjct: 239 GLVAQIPALLISVAAGNMVTRVTNPNGMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPG 298 Query: 185 MPHLPFLLFSALL-GFTGWRMSKQPL---AAEAEEK-SLETLTRTITETSEQQVSWETIP 239 P F+ + + G W + +Q +A+ + L+ L R E + + + E + Sbjct: 299 FPTWIFVSVGSAMTGGVIWTIRRQHRDVLSAQTDWSLRLDLLQRQCAEIAMRTGAKEAVR 358 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 LI P + YKL VR I+ G+ + E P Y Sbjct: 359 LILPKEI---YKLDVTA-------FFSAFEAVRISIAQEYGIPT-GYWLFEVDEGSPHSY 407 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 I++N AD AD L + + +Y + G+ + Q+ + Sbjct: 408 QIYVNQELADCGIFRADSLF-VKAHTSYLDALGIPWLSGFGRREGALVPTDQEQRLAEEN 466 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 + H+ ++ + + + +IT + N + + P L DL A + +Q+ Sbjct: 467 IVYWRPMEQLLMHLKRVAVERLDVMASLQNITAILNEVQTNNPALVGDLREAASNNQIAG 526 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVY 479 V R LL E + + V I ++ S D LA VR+ + IT F L V Sbjct: 527 VIRNLLRERIPVTSRVRILEGILKWSQKRPDPGYLAQKVRIEIADFITKRFAADGFLPVV 586 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 ++ +E+L+ + ++G ++L +P++ Q+ + G DPVL++ Sbjct: 587 VVSPTVESLMREGMRNTEEGNFLIL-----EPSISAYIAKQAKQICGEEFRRGHDPVLIM 641 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 +R + L VL+Y E+ E + +G L+ Sbjct: 642 QQDVRLAMHNILYEHGIHLPVLAYQEITPETVIYPVGFLL 681 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 170/574 (29%), Positives = 297/574 (51%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + LL + ++V+T G +RISEV+ARFTLDAMPG+QMAIDADL+AG I +A+ +R + Sbjct: 108 FVVLLIVQYMVITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLR 167 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+DF+GAMDGAS+FVRG+ +A + +N +GG+ +G+ +A A Y+ + IG Sbjct: 168 KESDFFGAMDGASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGV 226 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 L I SL LS +AA++V RVS + ++ ++L+A P ++ ++ V +++PG+P Sbjct: 227 ALQIAISSLALSLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVP 286 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L + LL + G + +P A A + +E R + SE + + ++ + L Sbjct: 287 KLLLIPLGVLLIWFGR--TPKPAAETALPEQVEA-KRLYEQLSEPEAMLGFVG-VDAVEL 342 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L D G + I +R+ +S+ G +P IRI +N LKP+QY I + G+ Sbjct: 343 EFGYELLPLFDTTSGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGV 402 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 A E + L+A+ ++ GV +P + + WI + K KA G V+D Sbjct: 403 TAGEGILEMGLLLAMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCG 462 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +++ TH+ ++++S + DL +I + + + + P + E+L + + V+R LL Sbjct: 463 TIVITHLGEVLKSSLADLITRQNIKDIVDYVGRSHPAVVEELQQVASLGDVEFVFRYLLQ 522 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485 E + +RD+V + ++ S ++D R A + + + V TL ++ Sbjct: 523 ERLPVRDVVRVFELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDM 582 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L + G + L + + + E + ++ VL+V P++R Sbjct: 583 ERALIESYQPGSEIGF------ALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRR 636 Query: 546 LLARYA-RLFAPGLHVLSYNEVPDELELKIMGAL 578 L R L VLSYNE+ D + ++G++ Sbjct: 637 ALWELLSRQGLKELTVLSYNEIMDAKYV-VVGSV 669 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 161/577 (27%), Positives = 271/577 (46%), Gaps = 39/577 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG ER++EVSARF+LD MPGKQM+ID DL AG+I+ A+T R+ V Sbjct: 127 FTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQ 186 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F GAMDGA KFV+GD IAG++++ +N+IGG+ I I +Y++S A Y +++IGD Sbjct: 187 QESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGD 246 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L ++ +LA++PG Sbjct: 247 GLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPG 306 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P + FSALL + ++ A E +P P+ Sbjct: 307 FPFITLAFFSALLALPIILIRRKKSVVSA-------------NGVEAPEKDSMVPGACPL 353 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L L L L + I +R + + GV LPE+ I + + + Sbjct: 354 ILRLSPTL-------HSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY 405 Query: 305 GIKADEADIP--ADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 IP AD L+ + G+ + P + W+ KA G V Sbjct: 406 QEPVFSLSIPAQADYLLIGADASVVGDSQTL----PNGMGQICWLTKDMAHKAQGFGLDV 461 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + I+ + ++ ++ + + L N + L ++L L +++ + + Sbjct: 462 FAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQ 521 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 L++E VS+RD+ I L+ + KD ++L VR+ALRR I + + L + + Sbjct: 522 RLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRI 581 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 +ENL+ + Q G L S ++ + Q+ EQ ++ Sbjct: 582 GEGIENLVRESIRQTAMGTYTALSSRH---------KTQILQLIEQALKQSAKLFIVTSV 632 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L + + +LS+ E+ +E ++++ ++ Sbjct: 633 DTRRFLRKITEATLFDVPILSWQELGEESLIQVVESI 669 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 158/579 (27%), Positives = 270/579 (46%), Gaps = 22/579 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L I FIVV KGA+R++EVSARFTLD +PG+QM+IDADL GLI ++A R ++ Sbjct: 125 FIVLSAIQFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E FYG++DGA KFV+GDAIAG+++ +N+ GG+ +GI + +S A Y ++T+GD Sbjct: 185 RETYFYGSLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIPSL++S +A ++VTRVS G++ D+ QL A P + A LA +P Sbjct: 245 GLVSQIPSLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIP 304 Query: 184 GMPHLPFLLFSALLGFTGW-RMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 G PH+ F+L + +L M ++ A A + +TR ++ + + Sbjct: 305 GFPHIQFVLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSS 364 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 P+ + LG A + L ++ +R+ + GV P + + + RL +Y + Sbjct: 365 PLRVRLGS---AACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVD 421 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 I+ + + A ++ +E ++G G P W++A A + Sbjct: 422 IDDVPFSGGTLLAGHVLVSGDTERV-TMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMK 479 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + ++ H+ + P + L N + + L + +Q+ V R Sbjct: 480 SSANGLLCDHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVTVAQKVVTTAQIAAVLR 539 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR--KQELTVYT 480 +LL + VS+R++ I +V + H + D R+AL + + E+ Sbjct: 540 SLLEQRVSIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAV 599 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 L E L ++ G +D + L Q + ++ +++ Sbjct: 600 LEPSWEAELEAQIDLGPDGE----PRCVLDADRLESLQRGFAARNDVVR------LVVTT 649 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVP-DELELKIMGAL 578 LRP L R R VL+ E+P DE ++++ L Sbjct: 650 AVLRPHLERVLRTLGMRTDVLAMEEIPLDEYRVRVIATL 688 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 460 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 163/576 (28%), Positives = 282/576 (48%), Gaps = 21/576 (3%) Query: 12 TINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADF 71 +NF+V+TKGA R++EV ARF LDAMPGKQ+AID+DL G I +A+ RR+ EA F Sbjct: 127 IVNFMVITKGAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGF 186 Query: 72 YGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQ 131 G++DGASKFV+GDAIAG++I A+NLI G+ G+ + LS A Y ++T+GDGLV+Q Sbjct: 187 LGSLDGASKFVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQ 246 Query: 132 IPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 IP++++S AAA+++++ + G I + QL + + LY GI+ + A++PG+P LPF+ Sbjct: 247 IPAVIVSVAAALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFI 306 Query: 192 LFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYK 251 +A + K A+EK+ T+ + ++I + I L + Sbjct: 307 AGAAGFAAVAYFTKK-----AADEKAASEETKPEDAAPKAPKIGDSI-YADEIHLEVAPD 360 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 LV +V + RI +R+ I++ G +LP IR+ +N LK ++Y + I G++ D Sbjct: 361 LVNMVLVGENG-FESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSG 419 Query: 312 DIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIAT 371 + +++AL + G + +P Y W+ +A+K + V++ V+AT Sbjct: 420 ILRPGQVLALIEENQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLAT 479 Query: 372 HVNKIVRSYIPDLFNYDDITQLHNRLSSTAPR---------LAEDLSAALNYSQLLKVYR 422 H+ ++++S +F + + + L++ + L E + + LL V R Sbjct: 480 HMLEVIQSNFSLVFTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLR 539 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTL 481 LLTE V +R++ I + + + VR L I L + L Sbjct: 540 MLLTERVPIRNLFLIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQL 599 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + E T + GG + + P + + +++ + G + Sbjct: 600 STSWEQKFTEYEVTNESGG----SDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSS 655 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGA 577 + R L V++Y E+ + + I+G Sbjct: 656 RRRRFLQTVLASKGIRNAVVAYEEINSKSKPYIIGV 691 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 264/584 (45%), Gaps = 80/584 (13%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV++KGAER++EV+ARF+LDAMPGKQ++ID+DL +GLI + +A+ RR+ + Sbjct: 122 FLIVTVVQFIVISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLE 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIA ++I+ INL+GG+ +G+F + + A A Q + ++TIGD Sbjct: 182 LESKLHGSLDGAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN---GDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLVAQIP+L + AA ++VTR +D G + + Q+ + P VL A + ++A++P Sbjct: 242 GLVAQIPALFSAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIP 301 Query: 184 GMPHLPFLLFSALLGFT---------GWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS 234 G P F+ + LG W M K + E+ +TL Sbjct: 302 GFPAAVFIGIAFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAP------ 355 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRL 294 + P+ L + + + L R V + + G+ +P + RL Sbjct: 356 ----RPVRPLVLEIAAPALDAAQAER---LRARFVLVIEAVQARLGLPMPAGEV--TTRL 406 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAK 354 P E + P L A + GE+DG Sbjct: 407 LP-------------EGERPRWTLSAYEAPVGSGEVDGP--------------------- 432 Query: 355 ALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNY 414 IA + ++R + T + NR+ + P L +++ A++ Sbjct: 433 ----------FEEAIAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVVRAVSS 482 Query: 415 SQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ 474 ++ +V R L E V LR++ + + ++ + +A R+ALRR I P + Sbjct: 483 PRIAEVLRLLAEEEVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHMADG 542 Query: 475 ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 V + LE + + + + + +Q ++ + ++ + G Sbjct: 543 RFPVLVVGGRLERFFRDNLQTVEGVAHLAMPP--------DQARTLIGMIRSETAKCGAR 594 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ LR L + GL +L YNE+ L L ++G L Sbjct: 595 A-IITAYDLRRPLRQLTAGDLFGLPILCYNELTPALPLDVVGTL 637 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 162/579 (27%), Positives = 260/579 (44%), Gaps = 69/579 (11%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL +G I+ AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDAIAG++I+A+NL+GG+ IGIF+ LS A Q Y L++IGD Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ AA +VTRVS + ++ ++ QL+ P L A I ++PG Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P L + ++ + E + + T+ + + +PI Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTA--TAALDRAKYGDPI 357 Query: 245 SLSLGYKLVALVDKAQ-GNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 +L ++ ++ G L RIR + + GV + + R+ I + Sbjct: 358 VATLSAATMSRLEANNLGGHLDARIRVAARAV----GVAITVPTFNADPRMGEDMIHIQV 413 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + A AD+ Sbjct: 414 ENVPAGLISCKADR---------------------------------------------- 427 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 A +IA + +IVR + +F+ DD TQ L +LA D+ ++ L+ V R Sbjct: 428 -PAELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAIDVRTQVSPMLLVAVIRR 486 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 LL GV+L + ++ +D LA R AL R I + ++ L V + + Sbjct: 487 LLDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFS 546 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAA---GKDPVLLV 539 E E + + + + + K+ + A G DPV+++ Sbjct: 547 PEWERFVR---------SYSDASDKTEKEEISEKLRRLANETKDALVDANERGFDPVVVM 597 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P +LR L + V++ E+ ++ ++G + Sbjct: 598 PGELRFLTQALMIRHNCRVPVVAIEEIDHDITSDVVGMV 636 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 132/384 (34%), Positives = 213/384 (55%), Gaps = 5/384 (1%) Query: 37 MPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAIN 96 MPG+QM+IDADLN G I+QA+AQ RRK++ EA FYGAMDGASKFV+GDAIAG++IL IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 97 LIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAH 156 +IGG+ IG+ ++ L A + Y L+TIGDG+V Q+P+L+++ IIVTR + +G+++ Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 157 DVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF---SALLGFTGWRMSKQPLAAEA 213 +V Q+ + P L + L PG+P LP L+ A + + +R + Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180 Query: 214 EEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQ 273 + + + + +EPI + +G + ALV + G+ L RI R+ Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVSQP-GSVLMDRIATFRK 239 Query: 274 VISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGV 333 + G++LP +R ++ RL +Y I I+G+ + AD+L+A+ + + G Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299 Query: 334 QGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQL 393 DP YG+P WI+ Q+A A + ++D+ +V TH+ +++R L ++ +L Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359 Query: 394 HNRLSSTAPRLAEDL-SAALNYSQ 416 NR+ L E+L L+ S Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 154/576 (26%), Positives = 253/576 (43%), Gaps = 70/576 (12%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL G I AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRSRLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDA+AG++I+A+NLIGG+ IGIF+ LS A Y L++IGD Sbjct: 180 QESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD--IAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ +A I+VTRVSD+G+ + D+ +L P L A + VPG Sbjct: 240 GLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGFVPG 299 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P L + + ++ S + +P+ Sbjct: 300 FPTGVLGAIGLCLAGLAFMVHRRR-------AGPAAAGSANAVESANSYPLDRTKYGDPV 352 Query: 245 SLSLGYKLVALVDKAQGNPLTQ-RIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 ++ + +A ++ + + RIR + + GV + + R+ + + Sbjct: 353 IATVAVETLARLEAMRLGEMLDGRIRMAARAV----GVSVTVPTFNADPRMAEDLIHLQV 408 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + A ++ Sbjct: 409 ENVPAGLVSCGPER---------------------------------------------- 422 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 +A IA + +IVR +I LF+ DD Q L +LA D++ + + V R Sbjct: 423 -TAEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAIDVATQVPLMLTVAVVRR 481 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 LL GV+L + V++ + LA R AL + I + ++ L L Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E ++ + + G ++ + + + + E+ G DP+++VP + Sbjct: 541 AEWDHFIRSY---DAAGATEKIEIAERLRLLAEKARQALEDANER----GYDPIIIVPGE 593 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L + VL+ E+ ++ ++ +G + Sbjct: 594 WRLLTQTLMIHHNCRIPVLAAEEIDRDITIETIGEI 629 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 150/564 (26%), Positives = 252/564 (44%), Gaps = 35/564 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 KGA+R++EV ARF+LDA+PGKQMAIDADL AG+I++A A RR+ + + FYGAMDGA Sbjct: 135 AKGADRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGA 194 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIAG++I +N++GG+ IG + Y ++T+GDGLV+QIPSLL+S Sbjct: 195 SKFVKGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLIS 254 Query: 139 TAAAIIVTRVS---DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSA 195 AA I++TRV+ + D+ +Q+ + P ++ A + A+VPG P L FL Sbjct: 255 FAAGILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGV 314 Query: 196 LLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVAL 255 LL + + + + + + R E V + P+ + L +L Sbjct: 315 LLALLAALIPRLSVMGRSTALARQHWAR--REGVATTVVEGDLGSSVPLRVRLAPELFDQ 372 Query: 256 VDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPA 315 + + + L +R +GV P +++ + L YA+ I+ + + + Sbjct: 373 LKPLELDRLLLALRER----FRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQL-- 426 Query: 316 DKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNK 375 G +P +A A I++ + + Sbjct: 427 ------------ERTQGEGERKRGLSLPSL----PGRAGAETGSQMEIEAM--LVGRIGD 468 Query: 376 IVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIV 435 + + + + L + LS P+L L+ ++ V LL GV +R++ Sbjct: 469 AICAKPWRFLGIQEASYLQDALSRHYPQLVNILAERIHLFVFRDVLVELLRTGVGIRNLR 528 Query: 436 TIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVN 494 IA L S D L + R AL I+ + ++ + + L +LE +L + Sbjct: 529 AIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQRLI 588 Query: 495 QAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLF 554 + Q + L V + Q + M VL+ LR + R Sbjct: 589 ASGQIKFIDL-QVDEQHAFVQQVIADMQTTWRDHPG----AVLVTGQDLRRSVEALLRGG 643 Query: 555 APGLHVLSYNEVPDELELKIMGAL 578 G+ VL+ E+ DE+ +++ + Sbjct: 644 ERGVTVLAVEEISDEVTYRVLHTI 667 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 182/396 (45%), Gaps = 6/396 (1%) Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 G+P PF L + F G + ++ A + E + E + +++ S + Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQ-ARQREADAAEAGKKQREAEEQERNSVKASLETNQ 179 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 I L LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Y I I Sbjct: 180 IELCLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKI 238 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 +G ++ +++ + + G + +PA+GM + A GY + Sbjct: 239 HGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTV 298 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 D+ SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS L V + Sbjct: 299 DNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLK 358 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLN 482 LL E +S+R++ I + + + + ++ VR+ + + I L V L Sbjct: 359 LLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVLNVLRLG 418 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 N + + + + +G V D +DP +L QF + + G+ VL+ P+ Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPE 475 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 RP + L VLS+ E+ +E+K +GA+ Sbjct: 476 ARPYIRMIIERLFATLPVLSHVEIARGVEVKSLGAI 511 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 12/357 (3%) Query: 218 LETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISD 277 E + + W + ++ +SL +G L+++V + R+ VR ++D Sbjct: 97 AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIV-APESKDFFDRMTAVRCQLAD 155 Query: 278 GNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGND 337 G+++P IR+R+N +L ++Y I I+ + A K +AL +DG G D Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215 Query: 338 PAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRL 397 P +G P WI+A Q+ +A GY VI+ + ++ TH+ + +R + ++ DD+ +L Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275 Query: 398 SSTAPRLAEDLSA-ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAA 456 E+L A L+ S + V LL EGVS+++ + LV T D LL A Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335 Query: 457 DVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLN 515 VR+ L R I ++ + L +LE+ L +N A G K + Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLE-LNDAGAGRKARPW--------VE 386 Query: 516 QFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELEL 572 + + +Q++ + L+ LR L R P + VLS+ EVP E+ Sbjct: 387 RLIDNLADSFQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 135/573 (23%), Positives = 258/573 (45%), Gaps = 83/573 (14%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI+ QAQ R D+ Sbjct: 117 FVIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLG 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E +G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + +++ ++TIGD Sbjct: 177 TENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSV----LYTATGIMFVLAVV 182 GLV+QIPSLLLS A + +TR+ + D + +Q++A L ++ ++ ++ Sbjct: 237 GLVSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLL 296 Query: 183 -PGMPH--LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP 239 P + + LP + ++ W+ ++ A E E +E++ Sbjct: 297 NPTLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVE-------------PEGSGVFESLK 343 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGV-RQVISDGNGVLLPEIRIRENFRLKPSQ 298 + D + + +R++ V +V G P + ++ + + Sbjct: 344 FV-------------FRDAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVD--- 385 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 A++I+G++ + SSE EI ND + + A + Sbjct: 386 IAVYISGVQT--------YQFSQNSSEGIVEIL----NDDVFNL-----HDDLSANLDEI 428 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 ++ +++ + + +N + + L+S + + ++ +A+ +++ Sbjct: 429 --------------ISYFIQTRLVEKYNLQYSSNIVAELASQSEIMKSEIDSAVGLNRVH 474 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELT 477 V + ++ D V+ L+ S V D +R R IT + ++ Sbjct: 475 DVLKQMIRSPEFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIH 534 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD-PV 536 V L+ EL ++ V D L + Q + +++ + + PV Sbjct: 535 VMLLSPELTEEISGYV-----------AGEFEDFERLIEIQRALKSEIKRLIMSHHNRPV 583 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDE 569 L+V L+ + + L V S+ ++ D Sbjct: 584 LVVNDNELNLVKTFVQQVMSTLLVCSHTDIVDN 616 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 8/333 (2%) Query: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307 G L A Q +RI R +D +G + P + R++ +L P +Y + + G + Sbjct: 2 FGGALTAAWQPMQA-VFAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTR 60 Query: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 +A + +A+ + G + G +PA+G+P WI Q+ +A +G+ +D + Sbjct: 61 FGQAATYPGRTLAIHPAGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVT 120 Query: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLT 426 + THV ++++++ LF + L + + + P L ++ + L + +V + LL Sbjct: 121 ALLTHVTELIKTHAARLFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLA 180 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNEL 485 E V +RDI I L + KD L VR L +I + L V TL+ L Sbjct: 181 EQVPIRDIDLIVQTLADVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPAL 240 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E + + A G +L DP + F + E M G P LL P +R Sbjct: 241 EAEIARNLAGADGHGTHVL-----DPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRR 295 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L ++R AP L VLS NEVPD + L+ + Sbjct: 296 ALKTFSRRVAPRLVVLSINEVPDAIPLRAFATV 328 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 230/563 (40%), Gaps = 116/563 (20%) Query: 18 VTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDG 77 +TKGAERI+EV ARF+L+A+PGKQM++DAD+ AG I ++A ++ + E+D++ AM+G Sbjct: 150 ITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEESDYFSAMEG 209 Query: 78 ASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLL 137 +FV+GDAI ++L +N++ + +G + L +GD LV+QIP+LL Sbjct: 210 VFRFVKGDAIMSWVLLGVNILAALFLGRATH-------VGDLWLTVLGDALVSQIPALLT 262 Query: 138 STAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALL 197 S AAA ++ +V + +A + + S I+ +A +PG P L FS LL Sbjct: 263 SCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKALILGFSVLL 322 Query: 198 GFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 F G+ K P + E E + L D Sbjct: 323 -FLGY---KNPSSGETLLFQKE-------------------------RVEF-----VLPD 348 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPE-IRIRENFRLKPSQYAIFINGIKADEADIPAD 316 + GNP + R I GV+ PE I +R + S + +G + ++ Sbjct: 349 EGVGNPA-NLYKDARNQIYQELGVVFPEAIVVR---HVTGSSPRLIFSGQEVALRELSCP 404 Query: 317 KLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKI 376 ++ + ++ P + T + Sbjct: 405 AIL-----------ESIRQLAPE------------------------TISERFVTRLVDE 429 Query: 377 VRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVT 436 R + + ++I L ++ + L+ + RAL+ E VSL Sbjct: 430 FREHA--FLSIEEI-----------------LPLKISENSLIFLLRALVRERVSLHLFPK 470 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSI-THPFVRKQELTVYTLNNELENLLTNVVNQ 495 I + + +K+ L VR L + I + R+ L V T+++ +E + + Sbjct: 471 ILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVRDS--- 527 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 V ++ + + + + G ++ + R L R + Sbjct: 528 ----------QEKVVLDLNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYF 575 Query: 556 PGLHVLSYNEVPDELELKIMGAL 578 P L VL+++E+P+E+ + ++GA+ Sbjct: 576 PDLLVLAHSELPEEIPITLLGAV 598 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 87/174 (50%), Positives = 123/174 (70%), Gaps = 1/174 (0%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L + F+V+ KGAER++EV ARFTLDAMPGKQM+IDAD+ AG+I+ +AQ RR V+ Sbjct: 123 FVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVS 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAGM++ +N++GG IGI ++ ++A A Y ++TIGD Sbjct: 183 QESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATGIMFVL 179 GLV+QIPSLL+S +A I++TR D+ G++ + Q+ P L A G L Sbjct: 243 GLVSQIPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGAGLSL 296 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 140/316 (44%), Gaps = 13/316 (4%) Query: 264 LTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPS 323 L + I G+R + GV LPE+ IR + L + ++ + + E +P D L+ Sbjct: 34 LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP 93 Query: 324 SETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD 383 + + V G A W+ A Q +A +G ++ I T + ++ Y + Sbjct: 94 CSSLVTNNQVLG---AKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAE 150 Query: 384 LFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVA 443 + L + + L ++L + ++ ++ + L+ E +S+RD+ TI LV Sbjct: 151 FIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVV 210 Query: 444 SSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKV 502 + KD ++L VR+ALRR + F + ++V L + +E+L+ + + Q G Sbjct: 211 WAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYS 270 Query: 503 MLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLS 562 L+ +LN+ ++ + +D VLL +R + + L VLS Sbjct: 271 ALEERQ-SLLILNKIKNAFAE--------NQDAVLLTTLDVRRFVRKIIERDLFVLPVLS 321 Query: 563 YNEVPDELELKIMGAL 578 + E+ DE+ LK+ G + Sbjct: 322 WQELGDEMNLKVAGTI 337 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 10/302 (3%) Query: 281 VLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAY 340 + P I +R N L Y + +N I + + + E + GV + Sbjct: 1 MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLA-MMGVAVREGER 59 Query: 341 GMPVT---WIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRL 397 +P W+ Q G + A ++A H++ ++ + + L +R+ Sbjct: 60 FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119 Query: 398 SSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAAD 457 AP L +++ L ++ ++++ L+ E VS+RD+ +I L+ S KD ++L Sbjct: 120 EERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTEY 179 Query: 458 VRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQ 516 VR AL+R I++ R Q L L+ +E + V Q G + L +P + + Sbjct: 180 VRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLAL-----EPAVTER 234 Query: 517 FQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 F + + PV++ +R + R L V+SY E+ E+ ++ + Sbjct: 235 FMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVN 294 Query: 577 AL 578 + Sbjct: 295 RI 296 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 135/225 (60%), Gaps = 7/225 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI QAQ R D+ Sbjct: 124 FIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQAQKLRADLG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E +G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + ++ ++T+GD Sbjct: 184 TENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVSRFSVLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV---- 182 GLV+QIPSLLLS A + +TR+ + D + QL+ + + ++ V+ +V Sbjct: 244 GLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIGVIIIVLGIA 303 Query: 183 -PGMPH--LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRT 224 P + + +P + L W+ +A + E L + Sbjct: 304 NPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHGLFES 348 Score = 49.1 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 48/261 (18%) Query: 338 PAYGMPVTWIQAAQKAKA-------LNMGYQVIDSASVIATHVNKI------VRSYIPDL 384 A G P + + Y+ ++ SV+ +++ V S + ++ Sbjct: 376 QALGSPAVLVDPTLEDDLKVYVSDIEMYSYKHAEAGSVVDIQNDELFVASADVASNLNNI 435 Query: 385 FNY------------DDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT------ 426 +Y + L+ + + ++ +A+ +++ V + ++ Sbjct: 436 ISYFIHHRFIEKYNLQYSNNIVAGLAQQSEIMKSEIDSAVGLNRVHDVLKQMIRSPEFYL 495 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485 + +S L+ S V D +R R IT + ++ ++ V L EL Sbjct: 496 DRISF------FEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQEGKVNVVLLTPEL 549 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 ++ V G +D + L + + G PV++V Sbjct: 550 TEEISGFV----AGEFDDVDRLIAVQTGLRNEIKRL------LVQYGVKPVVVVNENELN 599 Query: 546 LLARYARLFAPGLHVLSYNEV 566 ++ + + + V S+ ++ Sbjct: 600 VVKAFFQQVMSTVIVCSHADI 620 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 9/346 (2%) Query: 42 MAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGV 101 M+IDADL AG++++ + RR+ + +E+ YGA+DGA KF++GDAIAG++I+ +NLIGG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 102 CIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVR 159 +G+ ++ + A Y ++IGD LVAQIP+LL+S + IVTRV + N ++ + Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 160 NQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWR-MSKQPLAAEAEEKSL 218 L A+ S L + + +PG P F++ SALL ++ + ++ E Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180 Query: 219 ETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDG 278 E ++ + + IP P+ ++ K + + L R +++ Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKP---KLEQHNLASR---LKKTFFIE 234 Query: 279 NGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDP 338 GV LPEI I + + I IN I + + L + E +D + Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294 Query: 339 AYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDL 384 W+ + A MGY + ++ ++ I + Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 117/291 (40%), Gaps = 3/291 (1%) Query: 210 AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPL--TQR 267 A + + ++ ++ S I ++ +S L+ LV K++ L Q Sbjct: 1 KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTE-TVPLILLVPKSRREDLEKAQL 59 Query: 268 IRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETY 327 +R GV LPE+ +R+ L + + IN I+ ++ + D + + S+ Sbjct: 60 AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119 Query: 328 GEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNY 387 W+ + K +GY + ++ + + + + + F Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179 Query: 388 DDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTV 447 + + ++L + P L +++ ++ +V + LL+E VS+R++ I L + Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPR 239 Query: 448 TKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQ 498 KD I L +R A+ R I H F EL ++ E+E+++ + Q Sbjct: 240 EKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSG 290 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 6/248 (2%) Query: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 L L +NF++V+KG+ERI+EV +RF L+A+P KQMA+D+DL +G + + ++ + Sbjct: 113 LLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIE 172 Query: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 E DF+ AM+G +FV+GDAI ++L +N++ C+ ++ A +Q +GD Sbjct: 173 EGDFFSAMEGVFRFVKGDAIISCILLLVNVVSVTCL-----YYTSGYALEQMWFTVLGDA 227 Query: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 LV+Q+P+LL S AAA +++++ + + + + ++F L +P P Sbjct: 228 LVSQVPALLTSCAAATLISKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPK 287 Query: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247 P +L ++LL + +R + E++ + + E Q E + Sbjct: 288 FPIVLLASLL-WLAYRKEEPASEDSCIERAFSYVEGACPKEQESQFYQVYRAASEEVFED 346 Query: 248 LGYKLVAL 255 LG +L L Sbjct: 347 LGVRLPVL 354 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 16/204 (7%) Query: 377 VRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDIV 435 +R+ + N + + + ED + ++ S L+ + R L+ E VSL+ Sbjct: 386 LRNIAHEALNAEVVQKYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLFP 445 Query: 436 TIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVN 494 I + +LA VR +L I KQ L V T++ +E L+ + + Sbjct: 446 KILEAVAVYQNSGDSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSYS 505 Query: 495 QAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLF 554 ++ +P M + + E+ ++ + R + + Sbjct: 506 KS-------------NPVMQENVIRRVDSLLERSVFKDFRA-IVTSCETRFEMKKMLDPH 551 Query: 555 APGLHVLSYNEVPDELELKIMGAL 578 P L VLS++E+P E+ + +G + Sbjct: 552 FPDLLVLSHDELPKEIPISFLGIV 575 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 133/582 (22%), Positives = 219/582 (37%), Gaps = 105/582 (18%) Query: 1 MLSRSDLLT-------LLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 ++ R DLL + I ++V+ +GAER++EV+ARFTLD++PG+Q+AID + G I Sbjct: 95 LVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERARGQI 154 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 +A+ RR ++ ADF+G MDG + V+GDA+ G++I AINL+GG IG+ + Sbjct: 155 GADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GAGLV 213 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTAT 173 + Y + +GDGL+AQ+P++LL+ AAA++V+RV L +P +L AT Sbjct: 214 ESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAPMLLAPAT 273 Query: 174 GIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQV 233 ++ VLA VPGMP L F L +++ P AA+ Sbjct: 274 -LLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKK-------------------- 312 Query: 234 SWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFR 293 + EP+ + + L L + +RQ S + P + + Sbjct: 313 ----LASPEPLRVGVPASLRP----ELREDLEGALPALRQRCSATLNLPFPPLVLELRPE 364 Query: 294 LKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKA 353 L +AL + + ++ + A Sbjct: 365 LPERS--------------------LALDLEDRSLARETIEAS-----------AADDPD 393 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 L G+ + L D I R P + Sbjct: 394 AWLLAGF--------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAE 439 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVA----SSTVTKDHILLAADVRLALR----RS 465 LL + RA + E V L + + T L + R AL R Sbjct: 440 SIDLLHIARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497 Query: 466 ITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVK 525 + + + +LE+LL +V L +V Sbjct: 498 LHAGVCELGDPRWLRASPDLEDLLVARWEPGANRPRVHLSP------------KERQRVL 545 Query: 526 EQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVP 567 +++ G ++L + RP LA P + V + E+ Sbjct: 546 ARVQGEG-PAIVLCSARARPALAALMTGLRPHVPVFALGELA 586 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 8/218 (3%) Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVY 421 ++ ++ ++++V + DL + LS +P+LAE+L ++ S LLKV Sbjct: 8 VEPDALAQLPLDELVACHECDLLLRKPV---LQVLSKASPKLAEELVPGVISLSGLLKVL 64 Query: 422 RALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYT 480 +ALL+E V +RDI +IA + ++ ++D L A VR+ L R+I V + EL V T Sbjct: 65 QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 L LE +L N + +A QG + D V ++P+M + Q ++ + ++ + G+ +LLV Sbjct: 125 LEPRLEQILLNSLQRAGQGQE---DGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVA 181 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R +L+R+ RL P LHVL+Y E+PD ++ I+ + Sbjct: 182 GPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATV 219 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 15/176 (8%) Query: 110 LSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVL 169 + A + L+TIGDG+ Q+P+L++S A IIVTR + + +++ +V QL + P + Sbjct: 1 MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60 Query: 170 YTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETS 229 ++ L ++PGMP P ++ + F WR ++ A A E E + T + Sbjct: 61 LIVAAVLAALLLLPGMPKWPIVVIGT-IAFVAWRRIRKAAAEAAAEPVDEEVAAESTASP 119 Query: 230 EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPE 285 P+ + LG L +G + RI G+R+V + G+ P Sbjct: 120 -------------PLEIRLGEALSGAW-AGEGALVMDRIAGLRRVHEEQFGLPFPP 161 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 15/142 (10%) Query: 113 DAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLY 170 A Y +++IGDGL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L Sbjct: 1 SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60 Query: 171 TATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSE 230 ++ +LA++PG P + FSALL + ++ A E Sbjct: 61 LTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSA-------------NGVE 107 Query: 231 QQVSWETIPLIEPISLSLGYKL 252 +P P+ L L L Sbjct: 108 APEKDSMVPGACPLILRLSPTL 129 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 318 LMALPSSETYGE-IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKI 376 ++AL + + G ++G DP +G+ WIQ A GY V+D+ +VIATH+N + Sbjct: 7 MLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHV 66 Query: 377 VRSYIPDLFNYDDITQLHNRLSS 399 + +L D++ L + L + Sbjct: 67 LTVNATELLGPDEVQALLDGLKA 89 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 80.6 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 473 KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 ++L V + +LE ++T+ A Q D V +DPN+ + + G Sbjct: 3 SEDLNVLVMEPKLEQMITHAHTAAGQ------DQVGIDPNLAENLARQTADAAGRQEQLG 56 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + PVLLVP LR +AR + AP L VLS++E+P+ +++ + Sbjct: 57 QSPVLLVPDALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVV 102 >UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQE5_CLOPH Length = 266 Score = 79.1 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 50/258 (19%) Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVA-LVDK 258 +++SK + E L T +++ + I L EPI+L +G V L+ + Sbjct: 49 LLYQLSKVLSLSMDELLDLPTSLTESDNDKDKERLFRAI-LSEPITLKVGCGFVDYLMKE 107 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 Q +++ VR ++ +G LLP +RI ++ L + I E + Sbjct: 108 NQQG--FPKLQQVRINMAKESGYLLPTVRILDDITLDNHCFQILFYDKVVYEQN------ 159 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 L S + I +N Sbjct: 160 -NLNPSSSEYP--------------------------------------EIFEQLNLTCT 180 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDIVTI 437 ++ L + + L + LS P L + + L+Y+Q+ V ++L+ S+R++ I Sbjct: 181 AHYEKLLHRQIVKDLIDNLSKLYPVLVDGYIPDKLSYAQIQFVLKSLIEHKKSIRNLCEI 240 Query: 438 ATVLVASSTVTKDHILLA 455 L + + KD + ++ Sbjct: 241 IEYLEDNLVLGKDLVSIS 258 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 68.7 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 472 RKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAA 531 V L+ LE +L V G + ++P++ + +V ++ + Sbjct: 101 PDAAGKVMALDPSLERILGQAV------GAGGGEGGVIEPSLADGLLRHAAEVAQRQEDI 154 Query: 532 GKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 G PVLLVPPQLR LL+R+ R P L V++ +EVP+ +++ + Sbjct: 155 GLPPVLLVPPQLRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMV 201 >UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI000185465C Length = 72 Score = 55.6 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 146 TRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWR 203 TR + + D A + QL L I+ + A +PG+P L F W Sbjct: 1 TRTTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWL 60 Query: 204 MSKQ 207 +S++ Sbjct: 61 ISRE 64 >UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX Length = 63 Score = 47.5 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGA 577 + VLLV LR L R + VLS+ E+ + ++K+MG Sbjct: 3 EQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGR 47 >UniRef50_C9LWS1 Putative uncharacterized protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LWS1_9FIRM Length = 627 Score = 44.4 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 2/139 (1%) Query: 142 AIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTG 201 + T + + D+ + + + + + + LF Sbjct: 475 GFLSTDFNKEDTLFSDIFEGVFSVLGAVAIRGVLAAFFGLTGPAGWILGGLFVVAEKLLR 534 Query: 202 WRMSKQPLAAEAEEKSLETLTRTITETSEQ-QVSWETIPLIEPISLSLGYKLVALVDKAQ 260 + MS++ A+A+ + E LT+ + E Q ++ + L E + Y+L+ + + + Sbjct: 535 YLMSREERVAKAKNAAYEFLTKLEKKLQESLQDKFDEVDLGEQVR-RASYRLIEELVEER 593 Query: 261 GNPLTQRIRGVRQVISDGN 279 +R+ + + Sbjct: 594 RARFFERVEAAACHLQEEL 612 >UniRef50_B7UR42 Predicted portal protein n=71 Tax=root RepID=B7UR42_ECO27 Length = 861 Score = 44.4 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 101/340 (29%), Gaps = 45/340 (13%) Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 LIE I L L L +++ +T +R + G + +N L P++ Sbjct: 324 LIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAV------KNTLLTPNEA 377 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 N D L + + + + + + + A + Sbjct: 378 RKRENLPPLAGG----DALYLQQQNYSLEALSRRDAREDPFSSAGKTVSSQLPDGASDGN 433 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL------N 413 + ++ V + R + + + L + DL Sbjct: 434 KAISETE---HDAVKAMFRGDTEKMTERE--LSIIRALGEEFSTVLADLQRTFEGKMASQ 488 Query: 414 YSQLLKVYRAL---LTEGVSLRDIVTIATVLVASS---------TVTKDHILLAADVRLA 461 + +L L + V++ ++ + +V + D +L V A Sbjct: 489 AQAFEEKLTSLSAVLQKHVTVDEVRPVLQAMVDDAVGAIPVPRDGRDYDPDVLQQAVNDA 548 Query: 462 LRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQ-FQST 520 + I P + LT + LE ++ V+ V D DP +L + Sbjct: 549 VAN-IPQP-ADGKSLTPDDVRPMLEQMVKEAVSHIP----VPRDGRDYDPEVLQKAVNDA 602 Query: 521 MPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHV 560 + + + L P +RP+L + + + V Sbjct: 603 VANIPQPADGKS-----LTPDDVRPMLEQMVKEAVSHIPV 637 >UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190A6ED Length = 85 Score = 42.5 bits (99), Expect = 0.050, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 163 LASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLT 222 + +P VL + + +PG P F++ S +L + ++ + A+ K+ + Sbjct: 1 MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ 60 Query: 223 RTITETSE 230 E E Sbjct: 61 PLSIEEKE 68 >UniRef50_B2KCW9 Major facilitator superfamily MFS_1 n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCW9_ELUMP Length = 416 Score = 41.7 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 9/152 (5%) Query: 88 AGMMILAINLIGGVCIGIFKYN--LSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIV 145 A ++ + + + IG Y A + L IG LVA + +S + ++ Sbjct: 264 ASKIMTDMRITTALIIGCIIYGSGYILVGAAHGFTLAAIGIALVAT-GEMAISPGSNTLI 322 Query: 146 TRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV----PGMPHLPFLLFSALLGFTG 201 + ++ + Q + TA G+ ++ P +P+LL + Sbjct: 323 SNIAPEKARGRYLGMQ--EVSRHIGTAAGMFGAGVMIEYLSPISQIIPWLLIGFISFTVA 380 Query: 202 WRMSKQPLAAEAEEKSLETLTRTITETSEQQV 233 + K EE + E+ Sbjct: 381 FLFYKIKPMFTDEEDGINQTPVPPPPALEETQ 412 >UniRef50_UPI0001796DC4 PREDICTED: similar to membrane-spanning 4-domains, subfamily A, member 4 n=1 Tax=Equus caballus RepID=UPI0001796DC4 Length = 276 Score = 41.7 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 80 KFVRGD----AIAGMMILAINLIGGVCI--GIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 KF++G+ + ++I +N G+ + + +N D Y TI G V + Sbjct: 35 KFLKGEPKVLGVVQILIALVNFSLGIIMITAVVSFNGIYDRPLTVYSGYTIW-GSVMFLI 93 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 S LS AA TR G + ++ + + A+ +L T + I+ P Sbjct: 94 SGSLSIAAGTRTTRGLVQGSLGLNITSSIFAASGILVTLSSIIVFSVTYP 143 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firm... 683 0.0 UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 682 0.0 UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bac... 681 0.0 UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostri... 678 0.0 UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Fir... 670 0.0 UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriacea... 669 0.0 UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bac... 666 0.0 UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Del... 665 0.0 UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Fir... 664 0.0 UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bact... 659 0.0 UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-... 656 0.0 UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clo... 654 0.0 UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alic... 653 0.0 UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gam... 650 0.0 UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhod... 647 0.0 UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lact... 646 0.0 UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bact... 643 0.0 UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aqui... 638 0.0 UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=ce... 635 e-180 UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis prot... 633 e-180 UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium Rep... 632 e-179 UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Deni... 631 e-179 UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobact... 630 e-179 UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2... 629 e-179 UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Plan... 627 e-178 UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Orib... 626 e-178 UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammo... 624 e-177 UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bac... 623 e-177 UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n... 623 e-177 UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycet... 621 e-176 UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verr... 621 e-176 UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=The... 621 e-176 UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Sali... 619 e-176 UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bac... 616 e-175 UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Ente... 615 e-174 UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemm... 614 e-174 UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alp... 604 e-171 UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acid... 603 e-171 UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Lepto... 601 e-170 UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammap... 599 e-169 UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Pr... 596 e-169 UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Bor... 594 e-168 UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 589 e-166 UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Eps... 588 e-166 UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Trep... 581 e-164 UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cel... 581 e-164 UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alp... 580 e-164 UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphi... 574 e-162 UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Cam... 573 e-162 UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arco... 573 e-162 UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=... 571 e-161 UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 T... 571 e-161 UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Beta... 569 e-161 UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anae... 567 e-160 UniRef50_P35656 Hypersensitivity response secretion protein hrcV... 562 e-158 UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA... 560 e-158 UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n... 560 e-158 UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n... 559 e-158 UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhiz... 559 e-157 UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteu... 559 e-157 UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachys... 559 e-157 UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Ther... 557 e-157 UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein... 553 e-156 UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O... 553 e-156 UniRef50_Q057S2 Type III protein export, membrane component n=1 ... 552 e-155 UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepI... 552 e-155 UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaprot... 550 e-155 UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Entero... 547 e-154 UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax... 545 e-153 UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rho... 534 e-150 UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter s... 531 e-149 UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acid... 530 e-149 UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Ta... 528 e-148 UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Eryt... 526 e-148 UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=... 524 e-147 UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella den... 521 e-146 UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bact... 519 e-145 UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus... 519 e-145 UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 518 e-145 UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax... 515 e-144 UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paraco... 515 e-144 UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans ... 513 e-144 UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=G... 507 e-142 UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2... 505 e-141 UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkh... 504 e-141 UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax... 504 e-141 UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8... 500 e-140 UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alp... 497 e-139 UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Copr... 489 e-136 UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkho... 482 e-134 UniRef50_B9JJ70 Type III secretory system inner memberane protei... 453 e-126 UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax... 440 e-122 UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizob... 415 e-114 UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkho... 404 e-111 UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH 378 e-103 UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostell... 369 e-100 UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n... 352 1e-95 UniRef50_D0I6B6 Type III secretion inner membrane channel protei... 349 1e-94 UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax... 332 2e-89 UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirell... 308 3e-82 UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkho... 294 8e-78 UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endo... 290 7e-77 UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulf... 290 1e-76 UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulf... 275 4e-72 UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersi... 268 4e-70 UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Ples... 264 6e-69 UniRef50_UPI000190D087 possible secretory protein (associated wi... 237 9e-61 UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophil... 231 5e-59 UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID... 172 3e-41 UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4... 131 1e-28 UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subs... 122 5e-26 UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Cl... 112 4e-23 UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n... 82 6e-14 UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4... 81 1e-13 UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Arom... 71 1e-10 UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 T... 63 3e-08 UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae Re... 51 1e-04 Sequences not found previously or not previously below threshold: UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella ... 55 7e-06 UniRef50_B7UR42 Predicted portal protein n=71 Tax=root RepID=B7U... 44 0.022 UniRef50_Q08UM6 Putative uncharacterized protein n=1 Tax=Stigmat... 41 0.090 UniRef50_C0ZLC4 Putative uncharacterized protein n=2 Tax=Rhodoco... 41 0.096 UniRef50_B9ZQD6 ParB-like partition protein n=1 Tax=Thioalkalivi... 41 0.099 >UniRef50_Q5WFS0 Flagellar biosynthesis protein FlhA n=4 Tax=Firmicutes RepID=Q5WFS0_BACSK Length = 678 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 205/574 (35%), Positives = 326/574 (56%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I FIV+TKGAER+SEV ARFTLDAMPGKQM+IDADLNAGLI+ +A+ RR+ + Sbjct: 109 FLILIVIQFIVITKGAERVSEVGARFTLDAMPGKQMSIDADLNAGLISDREAKQRREKIE 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIA ++I+ IN++GG+ IG+ + + + A Y L+T+GD Sbjct: 169 HEADFYGSMDGASKFVKGDAIASIIIVIINMLGGLMIGMMQMGMDMNTAASTYTLLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+STA +IVT+ + G+++ D+ Q+LA P +LY + +L + + Sbjct: 229 GLVTQIPALLISTATGVIVTKAASEGNLSTDLSRQILAYPKLLYVTAATILLLGLATPIT 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + + LL F G+R+SK LA E++L L E S + ++PI Sbjct: 289 KVVTFSIAGLLAFAGYRLSKASLAKANFEEAL--LEEAPPEEPSGPESVVQLLQMDPIEF 346 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY L+ L D QG L R+ +R+ ++ G ++P IRIR+N L+P+ Y I + G Sbjct: 347 EFGYGLIPLADANQGGDLLDRVVMIRKQMALELGSVIPVIRIRDNISLEPNSYTIKVKGA 406 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ D MA+ + E I G++ +PA+G+P W+ + +A GY V+D Sbjct: 407 VVAKGEVLLDHYMAMSTGEQDDSIVGIETIEPAFGLPALWVDEDMRDRAEMAGYTVVDPP 466 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +VI+TH+ ++++++ +L ++ QL + L + P L E++ L + KV R LL Sbjct: 467 TVISTHLTEVLKAHAYELLGREETKQLIDHLKESYPTLVEEVTPNPLTTGDIQKVLRNLL 526 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNE 484 E +S+R++ I L +TKD ++ VR AL R IT EL V TL Sbjct: 527 REQLSIRNLPVIFEALADYGPLTKDMNVVTEYVRQALSRQITTQLTNGGNELFVITLAAA 586 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E + + + Q + G + L P + +++ G+ V+L P +R Sbjct: 587 VEKKIADAIGQNENGSFLALA-----PADSQAILQNTAKEVQKVAELGRQAVILCSPAVR 641 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + P + V+SYNE+ ++E++ +G + Sbjct: 642 MHMRQLIERHLPYVPVVSYNELEPDVEVQSVGVV 675 >UniRef50_A9KND9 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=A9KND9_CLOPH Length = 677 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 205/561 (36%), Positives = 329/561 (58%), Gaps = 9/561 (1%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER+SEV+ARFTLDAMPGKQMAIDADLN G I AQA+ RR+ + E++F+GAMDGA+ Sbjct: 122 KGSERVSEVTARFTLDAMPGKQMAIDADLNTGAITDAQARERREKIQEESNFFGAMDGAT 181 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA+AG++I +N+IGG +G+ K L A AF +Y ++TIGDGLV+QIPSL++S Sbjct: 182 KYVKGDAVAGLIITVVNMIGGTVMGMMKAGLPAGEAFSKYAILTIGDGLVSQIPSLMISL 241 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A I+VT+VS DI + QL + P VLY G + L +V +P + F + A+ F Sbjct: 242 ATGIVVTKVSKEADIGDLLMKQLFSIPKVLYMVGGALTFLGIVTPLPFIVFAGYGAMFIF 301 Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKA 259 G + K+ A EE++ E + + ++ ++ I L GY ++ L D Sbjct: 302 CGRVIDKRVKIASIEEEAS--TEEQSGEEIRRPENVVSLLQVDQIELEFGYGIIPLADVN 359 Query: 260 QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLM 319 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI E +I D M Sbjct: 360 QGGDLLDRVVLIRRQIALELGCVVPTIRLRDNIQLNPNQYVIKIKGIPLSEGEILFDHYM 419 Query: 320 ALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRS 379 A+ EI G+ +P++ +P WI +Q+ +A + GY V+D S+IATH+ +++R Sbjct: 420 AMNPGYVEEEITGIPTFEPSFHLPALWITESQRERAESFGYTVVDPPSIIATHLTEVIRG 479 Query: 380 YIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 ++ +L D+ L ++ L +L L ++ KV + LL EG+S+RD+VTI Sbjct: 480 HLDELLTRQDVQNLITNITEANHTLVSELVPKLLGVGEIQKVLQNLLKEGISIRDLVTIF 539 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQEL-TVYTLNNELENLLTNVVNQAQ 497 L + T+D +L VR +L+R+I++ + E+ +V TL+ ++E + N V Q + Sbjct: 540 ETLADYAPTTRDTDVLTEYVRQSLKRAISNKYFGPNEMTSVVTLDPKVEQEIMNSVKQTE 599 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 QG + +DP ++ E+++ GK+P+++ P +R + + + Sbjct: 600 QGAFLA-----IDPEKTQSIMKSVKDEVEKLENLGKNPIIITSPIVRMYFKKLTKEYFND 654 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L V+SYNE+ +EL+ +G + Sbjct: 655 LIVISYNEIESNVELQSVGMV 675 >UniRef50_D1B6A5 Flagellar biosynthesis protein FlhA n=19 Tax=Bacteria RepID=D1B6A5_THEAS Length = 697 Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 213/582 (36%), Positives = 333/582 (57%), Gaps = 15/582 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGAER++EV+ARFTLDAMPGKQMAIDADLNAG+I++ +A+ RR +V Sbjct: 120 FLILVIIQFLVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGMIDEQEARKRRANVQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFV+GDAIAG++I AIN++GG+ IG+ + + A Y L+T+GD Sbjct: 180 READFYGAMDGASKFVKGDAIAGLIITAINILGGLAIGVLQRGMELRQALSTYSLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIP+LLLSTA IIVTR + D+ D+ + + LY +G++F LAVVPG+P Sbjct: 240 GLVAQIPALLLSTATGIIVTRAAGESDLGRDMVASMTRNHRPLYIGSGLLFALAVVPGLP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTI---------TETSEQQVSWET 237 +PF L + + + + ++ AE E + + Sbjct: 300 TIPFALLGSAMAAMAYGIQREAAEAEVPAGRGEGSPQPKGAPGAPSAPPSAPSGPENVLP 359 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 + ++P+ + +GY L+ LVD +QG + +RI +R+ ++ G+++P IRIR+N +LKP+ Sbjct: 360 LLTVDPMEVEIGYALIPLVDPSQGGDILERIGTIRRQMAMDLGLVVPPIRIRDNIQLKPT 419 Query: 298 QYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALN 357 +Y I + G + ++ D +A+ + + G+ +PA+G+P WI + +A Sbjct: 420 EYVIRVKGAEVGRGELLPDHYLAMSTGGEDLLV-GIPTKEPAFGLPALWISPEIRDQAEG 478 Query: 358 MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQL 417 +GY V+D SV+ATH++++++ Y DL ++ +L + ++ T P + +DL L+ + + Sbjct: 479 LGYTVVDCPSVLATHLSEVIKRYGADLMTRQEVQKLVDLVAETNPAITKDLLDVLSLADV 538 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQEL 476 KV + L+ E VS+RD+VT+ L TK L VR AL R IT L Sbjct: 539 QKVLQGLIREQVSIRDLVTVFETLADHGRYTKSPDYLMERVREALSRVITLKLQDQDGVL 598 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 VYTL+ E + + G + + + P + + + E M G PV Sbjct: 599 GVYTLSPRWEQRIKECIK----GDLMQGWQLNMPPKEMQELMEAVGAAAEAMVMGGLTPV 654 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LL P +R ++ R P L V+SYNE+ +L+ +G + Sbjct: 655 LLTHPDVRLVVRRIVEGSLPQLFVVSYNEIAPSTQLRSLGVV 696 >UniRef50_C4ZAM7 Flagellar biosynthesis protein A n=4 Tax=Clostridia RepID=C4ZAM7_EUBR3 Length = 680 Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 202/576 (35%), Positives = 336/576 (58%), Gaps = 11/576 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+V+ KG+ER++EV+ARFTLDAMPGKQMAIDADLN G I +A+ RR + Sbjct: 110 FIVLIIIQFVVINKGSERVAEVTARFTLDAMPGKQMAIDADLNTGAITDKEAKARRDKIQ 169 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA+K+V+GDA AG++I INL+GG +G+ L + A Q++ L+TIGD Sbjct: 170 KESSFYGAMDGATKYVKGDAAAGIIITLINLVGGTIMGVMFQGLDVNEAIQKFGLLTIGD 229 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSLL+S + I+VT+ S+ D + ++ QL + VLY + ++ VL ++ + Sbjct: 230 GLVSQIPSLLISLSTGILVTKGSNENDFSGELLGQLFGTAKVLYIVSIVLVVLGILTPLR 289 Query: 187 HLPFLLFSALLGFT--GWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 + +L + F G + K+ E+++ + + E + + ++ ++PI Sbjct: 290 NEWWLFIGLAVAFFVTGKNLDKKAGIESIEDETAQ--AESDAEEIRKPENVVSLLQVDPI 347 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L GY ++ L D QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I Sbjct: 348 ELEFGYGIIPLADVNQGGDLLDRVVMIRRQIALELGTVVPIIRLRDNIQLNPNQYIIKIK 407 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 GI+ E +I D MA+ EI G+ +P++ +P WI +Q+ +A ++GY V+D Sbjct: 408 GIQVTEGEILFDHYMAMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVD 467 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 S+IATH+ +++RS+I +L D+ L N L + P + ++L L ++ KV + Sbjct: 468 PPSIIATHLTEVIRSHIAELLTRQDVQNLVNNLKESNPVIVDELIPKLLGLGEIQKVLQN 527 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLN 482 LL+EG+S+RD++TI L + T+D +L VR L+R+I+ + E +V TL+ Sbjct: 528 LLSEGISIRDLLTIFETLADHAQTTRDTDVLTEYVRQGLKRAISSKYFPANETTSVITLD 587 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +E + + V Q +QG + L DP+ + ++ ++++ GK +++ P Sbjct: 588 PAVEQEIMSSVKQTEQGSYLSL-----DPDRIKAIIKSVETEIGKLESLGKSAIIITSPI 642 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + L VLSYNEV +EL+ +G + Sbjct: 643 VRMYFKKMTEDYFKDLIVLSYNEVESNVELQSVGMV 678 >UniRef50_P35620 Flagellar biosynthesis protein flhA n=43 Tax=Firmicutes RepID=FLHA_BACSU Length = 677 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 206/562 (36%), Positives = 328/562 (58%), Gaps = 9/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAER+SEV+ARFTLDAMPGKQM+IDADLNAG+I + +A+ RR+ VA EADFYGAMDGA Sbjct: 121 TKGAERVSEVAARFTLDAMPGKQMSIDADLNAGMITEQEAKHRREKVAREADFYGAMDGA 180 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIAG++I+ IN+I G+ IG+ + +S A + ++T+GDG+V+QIP+LL+S Sbjct: 181 SKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQIPALLIS 240 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA I+VTR + G++ HD+ QL A P +LY A + +L + + L + LL Sbjct: 241 TATGIVVTRAASEGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLAGLLA 300 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 F + +SK E ++ LE + + S + I+PI GY L+ L D Sbjct: 301 FGAYTLSKSGKEKEEVDEILEEEAEV--DELKSPESVVQLLHIDPIEFEFGYGLIPLADA 358 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L RI +R+ ++ G+++P +RIR+N L+P++Y + I G + + ++ D Sbjct: 359 NQGGDLLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHY 418 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ + I+G++ +P++G+P WI A K +A +GY V+D ASV++TH+ + ++ Sbjct: 419 LAMSPTPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIK 478 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L + QL + L + P L E++ L+ + KV LL E VS+R++VTI Sbjct: 479 QHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTI 538 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQA 496 L +T D LL R AL + IT F ++ E L V T + +E + + V Q Sbjct: 539 FETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQT 598 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 + G + L +P++ ++ + EQ+ + +LL P +R + + + P Sbjct: 599 EHGNYLSL-----EPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFP 653 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLSYNE+ +E++ +G + Sbjct: 654 DLPVLSYNELEANVEVQSIGVV 675 >UniRef50_Q47153 Putative protein fhiA n=59 Tax=Enterobacteriaceae RepID=FHIA_ECOLI Length = 579 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 579/579 (100%), Positives = 579/579 (100%) Query: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT Sbjct: 1 MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQT 60 Query: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV Sbjct: 61 RRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYV 120 Query: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA Sbjct: 121 LMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLA 180 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL Sbjct: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA Sbjct: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY Sbjct: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV Sbjct: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 Query: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT Sbjct: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYT 480 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP Sbjct: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM Sbjct: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 >UniRef50_A0LC38 Flagellar biosynthesis protein FlhA n=25 Tax=Bacteria RepID=A0LC38_MAGSM Length = 708 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 199/574 (34%), Positives = 332/574 (57%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INFIV+TKGA RI+EV+ARFTLD MPGKQMAIDADLN+GLI + +A+ RR ++ Sbjct: 139 FSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSGLITEDEARRRRSEIE 198 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E++F+GAMDGASKFVRGDAIAG++I IN++ G IG+ + +LSA + Q Y ++T+GD Sbjct: 199 QESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGD 258 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIP+L++S A +VTR S + ++A V Q+ A P V+ + ++ +LA++PGMP Sbjct: 259 GLVAQIPTLVISAGAGFLVTRASGDANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMP 318 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F L + +G W + ++ A + +E +E + E+ ++ + L Sbjct: 319 TVAFGLLAIAMGSWSWYLFRR--AEQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRL 376 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L++LVD+ Q L +IR +R+ + G ++P I I++N +LKP +Y+ + G+ Sbjct: 377 DVGYGLISLVDETQHGDLLDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGV 436 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + ++ +A+ + G+I G+ +PA+G+P WI + ++ +A +GY V+D++ Sbjct: 437 EVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPAQWIASGERERAEMLGYTVVDAS 496 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ATH+ ++V ++ ++ ++ L + +S P+L E+L ++ + KV + LL Sbjct: 497 TVLATHITEMVHNHAHEMLTRQEVQNLLDLVSKNQPKLVEELIPNIVSLGDVQKVLQGLL 556 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNE 484 E VS+RD+ TI L + K L VR +L RSI ++ LT L + Sbjct: 557 RERVSIRDMGTILETLADYGKIIKQPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPD 616 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 ENL+ + G + L P Q + + E+ PVL+ ++R Sbjct: 617 AENLVAEAIVSGDYGSYLSL-----SPRSAQQLLTRVRSEVEKAATVVVQPVLITGSRVR 671 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 P + + P L VLS NE+P + + +G++ Sbjct: 672 PFVKQALEGVLPHLVVLSQNEIPANVSVSSLGSI 705 >UniRef50_A1V9R4 Flagellar biosynthesis protein FlhA n=11 Tax=Deltaproteobacteria RepID=A1V9R4_DESVV Length = 703 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 204/577 (35%), Positives = 328/577 (56%), Gaps = 9/577 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L +N V+T G RI+EV+ARFTLDAMPGKQMAI+ADLNAGLI++ +A RRK++ Sbjct: 130 FMILFILNKNVITAGTTRIAEVAARFTLDAMPGKQMAIEADLNAGLIDETEANERRKNIR 189 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA KFV GD AGM I IN+IGG+ +GI + ++ A Y L+T+GD Sbjct: 190 KEADFYGAMDGAGKFVSGDVNAGMFITLINIIGGLLVGIIQKDMPWRDALTTYTLLTVGD 249 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ IPS+++STAA IIV+R + + + QL + + +G++ + A+VPG+P Sbjct: 250 GLVSTIPSIIVSTAAGIIVSRAASEAKMGEEFLGQLTYNSRAMRLVSGVLLLFALVPGLP 309 Query: 187 HLPFLLFSALLGFTGWRMSKQ--PLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 +PFL+FSA L F + + A +++ + ++ + + + ++ + Sbjct: 310 TVPFLIFSASLFFFAKLLGDRDGDEAQGDAKRAGGKAAKGKGDSLDTPEEVQALLPLDAL 369 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L +GY L+ LVD+ Q L RIR +R+ + GV++P + +R+N +LKP QYA+ I Sbjct: 370 ELEVGYGLIPLVDEEQNGNLLTRIRSIRRQFALDMGVVIPSLHLRDNLQLKPGQYALLIK 429 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 G + A+I D L+A+ I G++ +PA+ +P WI +QK +A+ GY V+D Sbjct: 430 GNQVASAEILIDHLLAMDPGTARHRIQGIETREPAFNLPALWIPESQKEEAMLAGYTVVD 489 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 ++VIATH+ ++ R ++ + ++ L + LS AP+ E+L L+ + KV + Sbjct: 490 PSTVIATHLTEVFRRHLSEFLGRQEVQGLLDNLSKHAPKAVEELVPGVLSLGVVQKVLQN 549 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 L+ E VS+RD++++ L K+ L VR L RSI P + + L + TL+ Sbjct: 550 LVRENVSVRDLLSVVETLADYGPAIKNPDTLTEYVRERLARSIVKPHMDSEGTLPIITLD 609 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 +E L + + Q + G + L+ P+ + ++ E PV+L P Sbjct: 610 ANVERTLQDSIRQTEGGAYLALN-----PSTAQRLIQSVNTQVENAVGTDGQPVVLTQPG 664 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 RP LA+ F P + VLS E+P ++ L+ +G ++ Sbjct: 665 TRPHLAQLLMRFLPNIPVLSQAEIPPDIRLQAVGNVV 701 >UniRef50_B8FTQ1 Flagellar biosynthesis protein FlhA n=13 Tax=Firmicutes RepID=B8FTQ1_DESHD Length = 688 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 223/573 (38%), Positives = 333/573 (58%), Gaps = 9/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ +NFIV+TKG+ER+SEV ARFTLDAMPGKQM+IDADLNAG+I + QA+ RR+ + Sbjct: 118 FAILVVVNFIVITKGSERVSEVGARFTLDAMPGKQMSIDADLNAGMITETQARDRRQKIQ 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYGAMDGASKFV+GDAIA ++IL IN+IGG G+ + A Y L+TIGD Sbjct: 178 AEADFYGAMDGASKFVKGDAIAAIIILFINIIGGFVTGVVMRGMDIMEALHTYTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+STA ++VTR + ++ D+ QL +P LY G+ VLA+ G+P Sbjct: 238 GLVTQIPALLMSTATGLVVTRAASETNLGEDLSRQLFHTPKALYITAGVAMVLAMF-GLP 296 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP L+ + +L G M K A EE + T E S++ + + ++ + L Sbjct: 297 LLPLLIVAIVLVALGRVMDKGSQKAVVEESAA--ARETALEESKKPENVLNLLNVDNMEL 354 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY L+ALVD QG L RI +R+ ++ G ++P IR+R+N L+P+QY+I I G Sbjct: 355 ELGYALIALVDVQQGGDLLDRIVLIRRQVASELGFIVPVIRVRDNMNLQPNQYSIKIRGA 414 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + +I AD +A+ S I G+ +PA+G+ WI A + + G V+D+ Sbjct: 415 EVAGGEILADHYLAMSSGLGDDNIPGIPTKEPAFGLDAKWINAVYREEVEMNGGTVVDAP 474 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +V+ATH+ ++++S ++ + D+ L + AP +D L+ L KV LL Sbjct: 475 TVLATHLTEVIKSNAWEILSRQDVKTLLDHAREQAPAAVDDAMEHLDLGHLQKVLANLLR 534 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNEL 485 E VS+RD+VTI L ++ TKD L VR +L R I P + ++L V TL +L Sbjct: 535 ERVSIRDMVTILETLADYASTTKDLDRLTEYVRQSLARQIVQPLLGMDKQLPVLTLEPKL 594 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+ + + + G + L DP +L + ++ + E+M G +PVL+ P +R Sbjct: 595 EQLILDSIQPSDFGSYMTL-----DPRVLQELMQSLAREMEKMVLKGYNPVLVCAPVVRI 649 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R P L VLSYNE+ ++++ +G + Sbjct: 650 NLKRVTERQLPQLMVLSYNELVHGVQVQAVGMV 682 >UniRef50_C4Z5H9 Flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=C4Z5H9_EUBE2 Length = 679 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 195/561 (34%), Positives = 316/561 (56%), Gaps = 9/561 (1%) Query: 20 KGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGAS 79 KG+ER++EV+ARFTLDAM GKQMAID+DLN G I +A RRK + E F+G+MDGA+ Sbjct: 124 KGSERVAEVTARFTLDAMAGKQMAIDSDLNTGAITDKEAAERRKKLQQENSFFGSMDGAT 183 Query: 80 KFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLST 139 K+V+GDA AG++I INLIGG+ +G+ L+ + A +Y ++TIGDGL +QIPSLL+S Sbjct: 184 KYVKGDATAGLIITGINLIGGIVMGMAYGGLTINDALSKYTILTIGDGLCSQIPSLLISL 243 Query: 140 AAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGF 199 A ++VT+ S G++ ++ QL + VL + +L V +P F+ L Sbjct: 244 ATGVLVTKASSEGELGDEIIGQLFSMDRVLLMVGAALILLGVTTPLPWYIFIPLGMALII 303 Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKA 259 G ++S A E + T + + ++ ++PI L GY ++ L D Sbjct: 304 YGRKLS--AKAGETAIEESAEQEETEASEIRKPENVVSLLNVDPIELEFGYGIIPLADVN 361 Query: 260 QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLM 319 QG L R+ +R+ I+ G ++P IR+R+N +L P+QY I I GI+ E +I D M Sbjct: 362 QGGDLLDRVVMIRRQIALELGAVVPIIRLRDNIQLNPNQYVIKIKGIQVSEGEILFDHYM 421 Query: 320 ALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRS 379 A+ EI G+ +P++ +P WI +Q+ +A ++GY V+D S+IATH+ +++R Sbjct: 422 AMNPGYVEEEITGIPTFEPSFHLPAIWITESQRERAESLGYTVVDPPSIIATHLTEVIRQ 481 Query: 380 YIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 +I +L D+ L N + L E+L + ++ KV + LL EG+S+RD+VTI Sbjct: 482 HIAELLTRQDVQNLINNIKDNNTTLIEELVPKLMGVGEIQKVLQNLLEEGISIRDLVTIF 541 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQEL-TVYTLNNELENLLTNVVNQAQ 497 L + VT+D +L VR AL+R+I+ + E+ V T++ +E + N V + Sbjct: 542 ETLADHAAVTRDPDILTEYVRQALKRAISSKYFLTGEVTNVVTVDPAIEQEIMNSVKNTE 601 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 QG + L DP + + ++++ GK+P+++ P +R A+ + Sbjct: 602 QGSYLSL-----DPERSKKIIEALGNELKKLEDMGKNPIVITSPIVRMYFRNLAKDYYKD 656 Query: 558 LHVLSYNEVPDELELKIMGAL 578 + V+SYNEV +EL+ +G + Sbjct: 657 IIVISYNEVESNVELQSVGMV 677 >UniRef50_Q5DY37 Lateral flagellar export/assembly protein (FlhA-like) n=72 Tax=Proteobacteria RepID=Q5DY37_ECOLX Length = 697 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 558/572 (97%), Positives = 563/572 (98%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA Sbjct: 125 FIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD Sbjct: 185 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVR+QLLASPSVLYTATGIMFVLAVVPGMP Sbjct: 245 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMP 304 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPFLLFSALLGFTGWRMSK+P AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL Sbjct: 305 HLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 364 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI Sbjct: 365 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 424 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 KADEADIPADKLMALPSSETYGEIDGV GNDPAYGMPVTWIQ AQKAKALNMGYQVIDSA Sbjct: 425 KADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSA 484 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSS APRLAEDLSAALNYSQLLKVYRALLT Sbjct: 485 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLT 544 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 EGVSLRDIVTIATVLVASST+TKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE Sbjct: 545 EGVSLRDIVTIATVLVASSTLTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 604 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 NLLTNVVNQAQQ GKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK PVLLVPPQLRPL Sbjct: 605 NLLTNVVNQAQQAGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKAPVLLVPPQLRPL 664 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LARYARLFAPGLHVLSYNEVPDELELKIMGAL Sbjct: 665 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 696 >UniRef50_B0K1R1 Flagellar biosynthesis protein FlhA n=15 Tax=Clostridia RepID=B0K1R1_THEPX Length = 673 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 208/573 (36%), Positives = 341/573 (59%), Gaps = 14/573 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+T+GAER+SEVSARFTLDAMPGKQMAIDADLNAGLI + +A+ RRK++ Sbjct: 109 FLIIAIVQFIVITRGAERVSEVSARFTLDAMPGKQMAIDADLNAGLITEKEARERRKEIQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIA ++I+ IN++ G+ IG+ + + A Y+++T+GD Sbjct: 169 QEAKFYGAMDGASKFVKGDAIASIIIIIINIVAGLIIGMVMKGMDINRALNTYIVLTVGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STA +IVTR + ++ DV QL P +L A G++F L +VP +P Sbjct: 229 GLVSQIPALLISTATGMIVTRSASESNLGGDVIKQLFNQPHILKVAAGLLFALVLVPSLP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP +L +L + G+ +++ E E++ I + + + ++PI L Sbjct: 289 KLPLILIGSLFAYLGFAGTQKVTIKEEEQEENIKELENIRDPKK----VYELLQVDPIEL 344 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L L RI +R+ I+ G+++P IR+R+N +LKP++Y I I G Sbjct: 345 EFGYELIPLAS----GELLDRIVMIRRQIALDLGIVVPMIRLRDNIQLKPNEYIIKIRGN 400 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + D+ MA+ + E +I G++ +PA+G+P W+ +++KA GY V+D Sbjct: 401 EIARGKVYVDRYMAMTAGEIDEDISGIREREPAFGLPAIWVDENERSKAEARGYTVVDVP 460 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVIATH+ +++ + +L ++ L + + +T P L E+L L ++ KV LL Sbjct: 461 SVIATHLTHVIKQHAHELLGRQEVQSLIDNVKTTNPALIEELVPKLLTIGEIEKVLSNLL 520 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 EG+S+RD+VTI L + + +D +L VR AL R+I++ + ++ V TL+ + Sbjct: 521 REGLSIRDLVTILETLADYAPIIRDTDVLTEYVRQALARTISNKYAPYGKIEVITLDPSV 580 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+++ + Q + G + L +P+ + ++ ++ +++ G PV+L P R Sbjct: 581 EQLISSSITQTEHGSYLAL-----EPSSAQRILKSIHELAKKVTLKGGQPVILTAPVTRF 635 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + +P + VLSYNE+ +E+ + + Sbjct: 636 YLRKLVEQISPDIAVLSYNELLPNIEVASVETV 668 >UniRef50_C8WWG6 Flagellar biosynthesis protein FlhA n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG6_ALIAD Length = 682 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 199/562 (35%), Positives = 318/562 (56%), Gaps = 9/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GAER++EV+ARFTLDAMPGKQ+AIDADLNAGLI +A+A+ RR+ + EADFYGAMDGA Sbjct: 125 TRGAERVAEVAARFTLDAMPGKQLAIDADLNAGLIQEAEARRRREKIQQEADFYGAMDGA 184 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIA M+I+AIN++ G+ IG+ + S A Y ++++GDGLV+QIP+LLLS Sbjct: 185 SKFVKGDAIASMVIVAINVVAGLIIGVAMQHDSFSEALHTYTMLSVGDGLVSQIPALLLS 244 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TA ++V+R + + ++ DV Q+ LY +G + +L ++ + LP + + Sbjct: 245 TATGLMVSRAATDQNMGADVVKQVFGYARALYVVSGAIVLLGLITPIGILPVIPIAGGAT 304 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 R + + ++ E R +++ + + +EP+ GY L+ LVD Sbjct: 305 LMARRAERSRALQQ--KREEEEKARQKRSEAKKPENVYQLITVEPVEFEFGYGLIPLVDA 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG +R+ +R+ ++ GV+LP +R+R+N LKP+QY I + G++ +I Sbjct: 363 RQGGDFMERVAMIRRQLATDLGVVLPMVRMRDNVLLKPTQYVIKLKGVEVARGEILMGHW 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +AL E+ G+ DP +G+P W+ K +A GY V+D SV+ATH+ +++R Sbjct: 423 LALSPGIDNPEVKGIPTKDPTFGLPALWVTGEMKLRAEASGYTVVDPPSVMATHLTEVLR 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L + +L L T P + ED+ L+ + +V LL EGV +RD+VTI Sbjct: 483 RHAHELLGRQQVKELLEHLKQTHPAVVEDVYPGTLSLGHIQRVLCNLLEEGVPIRDLVTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L + T+D L VR L R I +++ + LTV T + LE + V Sbjct: 543 LEALADAGRQTQDVDQLTEKVRQRLARHICAQYLQGEDGLTVLTFDPALEREMQQAVV-- 600 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 +QGG + + ++P + ++ +++ GK PVLLV P++R L+R R + P Sbjct: 601 EQGGALSI---GLEPQKAQAVFRKLKELWTELQGTGKSPVLLVHPRIRLPLSRLVRRYVP 657 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLS+ E+ + + G + Sbjct: 658 DLPVLSFAELDPSISIHSGGVV 679 >UniRef50_Q21IQ2 Flagellar biosynthesis protein FlhA n=16 Tax=Gammaproteobacteria RepID=Q21IQ2_SACD2 Length = 755 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 239/594 (40%), Positives = 359/594 (60%), Gaps = 36/594 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEVSARFTLDAMPGKQMAIDADLNAG+I+Q +A+TRR+DVASEADFYGAMDGA Sbjct: 153 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGIIDQDEARTRREDVASEADFYGAMDGA 212 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGD++AG++IL IN+ GG+ +G+ ++ L A ++YVL+TIGDGLVAQIPSLLLS Sbjct: 213 SKFVRGDSVAGILILIINICGGLLVGMVQHQLEFSDALEKYVLLTIGDGLVAQIPSLLLS 272 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AAAI+VTRV+ + D+ V +Q+ SP L A I+F++ +PGMPH PF+ + + G Sbjct: 273 VAAAIMVTRVNSSEDMNRQVLSQMFESPKALAVAGCIIFIMGAIPGMPHFPFITLAIICG 332 Query: 199 FTGWRMSKQPLAAE--------------------------------AEEKSLETLTRTIT 226 + + + AE E +S Sbjct: 333 ILAYYIHFRSQEAEVVEVGNARGFTQSSPSGQTGAQPSMPAGNMPAIENQSARQGNPPPQ 392 Query: 227 ETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEI 286 + +VSW+ + ++ + L +GY+L+ LVDK QG L RI+GVR+ +S G L+P + Sbjct: 393 SSEPTEVSWDDVTPVDLVGLEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQDLGFLIPAV 452 Query: 287 RIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTW 346 IR+N L PS Y I + G+ E ++ DK +A+ + +G + G + DPA+G+ W Sbjct: 453 HIRDNLDLLPSGYRITLMGVSIGEGEVFPDKFLAINPGQVFGSLQGTKTKDPAFGLEAIW 512 Query: 347 IQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAE 406 I AQ+ +A +GY V+D ++V+ATH+N+I++++ +L ++++ + + L +P+L E Sbjct: 513 IDEAQREQAQTLGYTVVDPSTVVATHLNQIIQTHTHELLGHEEVQKWLDLLGEKSPKLVE 572 Query: 407 DL-SAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRS 465 +L L+ +QLLK + LL E V +RD+ TIA L A + D L + R++L R Sbjct: 573 ELVPETLSINQLLKTLQGLLREQVPIRDMRTIAEALAAHGNKSMDTTALTSIARVSLARQ 632 Query: 466 ITHPFV-RKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQV 524 I V + L V TL+ LE LL V QAQ+ G D ++P + + ++ + Sbjct: 633 IVQNIVGQDPNLPVITLDPSLEQLLLQSVQQAQKAGAS--DGAFIEPQLAERLNKSLVET 690 Query: 525 KEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ + AG+ VLLV +RP++A++ R +HV++YNEVPD ++ I + Sbjct: 691 AKKQEMAGRPIVLLVAAPIRPMMAQFVRYHISEMHVIAYNEVPDNKQITIEATI 744 >UniRef50_D0MGA3 Flagellar biosynthesis protein FlhA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGA3_RHOM4 Length = 696 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 209/571 (36%), Positives = 334/571 (58%), Gaps = 10/571 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG+ RI+EV+ARFTLDA+PGKQMAIDADLNAGLI++ +A+ RR+++A Sbjct: 128 FIVLVVINFVVITKGSGRIAEVAARFTLDALPGKQMAIDADLNAGLIDEDEARKRREEIA 187 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I A+N+IGG IG+F++ +SA A Q +VL++IGD Sbjct: 188 READFYGAMDGASKFVRGDAIAGLVITAVNIIGGFLIGVFQHGMSAAEAAQNFVLLSIGD 247 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STAA IIV+R S ++A + + QL L + +L +VPG+P Sbjct: 248 GLVSQIPALLISTAAGIIVSRASGEANLAEEFKGQLFGRSYPLLITGSFLALLGLVPGLP 307 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +PF L + G+ Q E E++ + + +++P+ L Sbjct: 308 LVPFWLLAGTTLLLGY----QRRQFERREQAKPAQPEAQEPEQKPSEDPGELLMVDPLEL 363 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD Q L RI+ +RQ ++ G+++P +RIR+N L ++Y I I G Sbjct: 364 EIGYGLIPLVDPNQHGDLLDRIKVLRQQLALELGIVIPPVRIRDNMALGANRYVIKIRGN 423 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 E ++ +AL G++ DP +G+P W+ A MG V+++ Sbjct: 424 PVAEGEVLPGYYLALLPEGLEETPPGLRTTDPTFGLPALWVAERNLPDAERMGLTVVEAP 483 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +VI TH+ +++R L + ++ +L +++ T P L E+L L+ + KV + LL Sbjct: 484 AVITTHLLEVLRKNAHLLLDRQEVKKLLDKVKETHPALIEELTPNLLSIGAIQKVLKRLL 543 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNE 484 E + +RD+V+I L +T TK+ +L VR AL +IT F+ + + L+ Sbjct: 544 RERIPIRDLVSILEALADHATSTKNIDVLTEYVRHALAPTITRQFLSPDGAIYAFVLDPI 603 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L Q + G++ ++ ++P +F ++ ++ + G+ PVLL P LR Sbjct: 604 LERHLL----QQAEAGELHPGTLGLEPRQSERFLKEAERITRRLLSEGRPPVLLTSPVLR 659 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIM 575 P+L + P L+VLSYN++ + ++++ Sbjct: 660 PVLYNFLAPSIPDLNVLSYNDLLPDTRVEVV 690 >UniRef50_C2ED96 Flagellar biosynthesis protein FlhA n=5 Tax=Lactobacillales RepID=C2ED96_9LACO Length = 692 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 203/577 (35%), Positives = 325/577 (56%), Gaps = 11/577 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + ++ + +VVT G+ R+SEVSARFTLDAMPGKQMAID+DLN+G I + QA+ RRKD+ Sbjct: 120 FVIIMIVQLVVVTNGSGRVSEVSARFTLDAMPGKQMAIDSDLNSGAITEEQARQRRKDLQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYG+MDGASKFV+GDAIAG++I+ +NLIGG I K +LS A Q+ + IGD Sbjct: 180 READFYGSMDGASKFVKGDAIAGIIIVLVNLIGGTIIFTAKGDLSITDALSQFGKLAIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+ +PSLL+S A +IVTR DN D+ + L +P + I+ VLA+VPG P Sbjct: 240 GLVSSVPSLLISLATGVIVTRSEDNSTFGTDIASDALRNPQLFKVVGVILLVLALVPGFP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP--LIEPI 244 +PF++ S + F + KQ +E+ E T + E+Q + + +EP+ Sbjct: 300 KIPFIVLSLAM-FAANVLVKQKEEQRIKERIKEEQTLALQRKKEEQEEDDDVASFQVEPL 358 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 S+ +GY L+ LVD N L RI +R+ + G+L+ +RIR+N L + Y+I I Sbjct: 359 SIEIGYGLIPLVDSTIDNSLMNRISAIRRQTAHELGILVSPVRIRDNLYLNANDYSIKIR 418 Query: 305 GIKADEADIPADKLMALP-SSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + DI DK M + S + G+ +PA+ + WI K A G+ VI Sbjct: 419 GNEVGHGDIYPDKYMIISQSDDGSFPFQGIPTKEPAFQLDALWIDEKDKENADLQGFTVI 478 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 + +VIATH+ +I+ ++ P+L ++ +L + + + ++L + ++ KV + Sbjct: 479 EPLTVIATHLKEIIHAHAPELLGRQEVQKLLEGIKANNNVVIDELIPDIMRLGEVEKVLQ 538 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTL 481 LL E V + D+ TI L TVTKD +L VR LRR+I + + + + V T+ Sbjct: 539 NLLEENVPINDLSTILETLADYGTVTKDTEVLTEYVRQGLRRTIANKYADENDRINVVTI 598 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + ++E +++ + + G + P+ +N+ + + + +QM A + V+L P Sbjct: 599 HPKVEEMVSQSIQKTATGSY-----PVMKPDSVNKILTAIGDISQQMAAQNMNYVILTSP 653 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++R + P + VLS NE+P+E+ ++ +G + Sbjct: 654 KIRLAFRKLIAFNFPDVAVLSLNEIPNEIAIESIGNI 690 >UniRef50_A6Q2M0 Flagellar biosynthesis protein FlhA n=6 Tax=Bacteria RepID=A6Q2M0_NITSB Length = 695 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 213/572 (37%), Positives = 339/572 (59%), Gaps = 8/572 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+TINFIVVTKG ERISEV ARFTLDAMPGKQMAIDADLNAGLI++ +A+ RR+ +A Sbjct: 126 FVILVTINFIVVTKGTERISEVGARFTLDAMPGKQMAIDADLNAGLIDEQEARRRREAIA 185 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIAG++I IN+IGG+ IG+ ++ + A + L+T+GD Sbjct: 186 KEADFYGAMDGASKFIRGDAIAGIIITTINIIGGIAIGVLQHGMDLSTAAANFTLLTVGD 245 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+ STAA ++VTR ++ ++ +QL + P LY G +FV+ VPGMP Sbjct: 246 GLVSQIPSLITSTAAGLMVTRAVSETNLGKEIFSQLTSYPKALYMTAGALFVIGTVPGMP 305 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +PF + + ++ T + M + E++ E + E + + I E I+ Sbjct: 306 FIPFTILAGMIALTAYMMQLEMKRETIEKEEEEVKEILQQQVEESEEEY--ITQPETITF 363 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD+ +G L +RI+ +R+ +S G+++P I I++N LK +Y I + G+ Sbjct: 364 EIGYGLIPLVDEEKGGELLKRIKSLRKQLSKELGLMVPLIHIKDNLELKSGEYRILLKGV 423 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + I K++A+ + +T G+++GV+ +P +G+ WI +QK KA +G+ V+D Sbjct: 424 EVARYQIEPGKMLAIDTGQTNGKLEGVETTEPTFGLKAYWIDESQKDKARMLGFTVVDIP 483 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +VI TH+++I++ ++ + +L ++L P + E + + Y+ L +V + LL Sbjct: 484 TVIITHLSEIIKQNAHEILGRSETKELVDKLGQKYPIVKEIVPEQVPYAILHRVLQNLLR 543 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELE 486 E + ++D++TI L + T T+D +L VR +L R IT + + L TL+ E Sbjct: 544 EHIPIKDLLTIIESLSDNITKTEDTDILTELVRESLARLITSIYAKDGVLYALTLDPASE 603 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 L + + + P+DP L F + + E+ + PVLL P +R Sbjct: 604 EKLYAKIKEYNG------NLPPIDPAKLQSFIMQISKNMEKFVIEQRTPVLLTSPNVRRY 657 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + + + VLSYNEV + +LKI+ + Sbjct: 658 VYKIIEPYMSNVAVLSYNEVDPKTKLKIIDKV 689 >UniRef50_O67265 Flagellar biosynthesis protein flhA n=3 Tax=Aquificaceae RepID=FLHA_AQUAE Length = 678 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 196/561 (34%), Positives = 329/561 (58%), Gaps = 12/561 (2%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGAERISEV+ARFTLDA+PGKQM+IDADLNAGLI + +A+ RR+++ EA+FY AMDGA Sbjct: 126 TKGAERISEVAARFTLDALPGKQMSIDADLNAGLITEEEAKRRRQELEKEANFYAAMDGA 185 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKF+RGDAIA ++IL ++L+GG+ IGI + +A + Y +++IG+GL +Q+P+LLLS Sbjct: 186 SKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQVPALLLS 245 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 TAA ++ T++S ++ + +L P L + G++ + ++PG+P LPFL SA+L Sbjct: 246 TAAGVLTTKMSSRENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMSAILA 305 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 + + + E +E +T + E IP EPI+L +GY L+ LVD+ Sbjct: 306 GAYYLVQQSLKERELKELEKLAQEKTKEKEE---EGEELIPQPEPITLEIGYALIPLVDE 362 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 +QG + ++I+ +R+ I+ GV++P I IR+N RLKP++Y I I GI+ D ++ Sbjct: 363 SQGGQIPKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHY 422 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ G I+G++ DPA+ + WI +K +A +GY V+D+ +V+ TH++++++ Sbjct: 423 LAVNLGNAKGPIEGIETYDPAFKIKAYWITEDKKEEAQKLGYMVVDAETVLITHLSEVIK 482 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L +++ +L LS P++ ++ + + S + +V + LL EG+ + D++TI Sbjct: 483 RNLHELLTRNEVMELIEMLSKKYPKVVKEIVPEQVPISIIHRVLQNLLREGIPVNDLLTI 542 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQ 497 L TKD LL VR AL + IT ++ L L+ ++E L + + + Sbjct: 543 LETLADYIEQTKDPDLLTEYVRQALSKRITRMYLTNGTLYAIALSPKVEAKLVKFLKENR 602 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 + + +LN + + G PVLL ++R + + + Sbjct: 603 EDEFIDY--------VLNTLLPKIKNEIVKFAQYGAVPVLLTSGEVRRFVRKTIEPYLSE 654 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L VLSYNE+ ++ +KI+G + Sbjct: 655 LAVLSYNELEKQVNIKIIGIV 675 >UniRef50_P57335 Flagellar biosynthesis protein flhA n=478 Tax=cellular organisms RepID=FLHA_BUCAI Length = 696 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 218/567 (38%), Positives = 324/567 (57%), Gaps = 12/567 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA RI+EV ARF LDAMPGKQMAIDADLNAGLI + +A+ RR + EADFYG Sbjct: 137 NFIVITKGASRIAEVGARFILDAMPGKQMAIDADLNAGLIGEEKAKKRRIKITQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ IN+ GG+ IG+ ++++ + A + Y L+TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMVINIFGGLIIGLIQHHMFLNKAVEVYTLLTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA +IVTRVS N ++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVISTAAGVIVTRVSSNQNVGEQMASQLFYNPQVILLSAIVLGVLGLVPGMPNIIFLVF 316 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + LL W + ++ E + + I + + SW + L +PI + +GYKL Sbjct: 317 TVLLFILSWWLYEKKYDLENDFIKSNKKYKFI-HDAISEASWNDVELEDPIRIEIGYKLT 375 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 + D + L RIR VR+ ++ G L P +RI+ N L + Y IFI G++ + Sbjct: 376 PMTDINKKGDLLDRIRIVRKKVAQEIGFLPPLVRIKNNMHLSGNSYRIFIKGVEVGQGKC 435 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 + MA+ S + + +P +G+ WI K KA GY VI+S+ V++TH+ Sbjct: 436 FYGRFMAIHSGRETESLPFEKVYEPTFGLSGYWIDEEFKNKAQKKGYSVIESSVVLSTHL 495 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 N ++ ++I DLF + QL R++ P+L EDL +N + K+ R LL E V +R Sbjct: 496 NFLITNHIDDLFGRQEAQQLLERVTIDHPKLTEDLIPNTINLTIFHKILRNLLLEHVPIR 555 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNELENLLTN 491 D+ TI L + KD L + VR+ALR+ I F + + + L LE LL N Sbjct: 556 DMRTILETLSEHADTQKDPNELTSIVRIALRKIIIQKLFNQNNIIEIIGLEPNLERLLLN 615 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + ++PN+ + ++ G VLLV LR L+++ Sbjct: 616 SLKSGTD---------TIEPNLSENLLIQTKEAIKKQLLIGSPLVLLVRHSLRYFLSKFL 666 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 R P L VLS E+ D E+K+ + Sbjct: 667 RQNFPELTVLSQFEIIDVKEIKMTNII 693 >UniRef50_Q1Q6S4 Strong similarity to flagellar biosynthesis protein FlhA n=2 Tax=Bacteria RepID=Q1Q6S4_9BACT Length = 695 Score = 633 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 194/563 (34%), Positives = 330/563 (58%), Gaps = 10/563 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RI EV+ARFTLDAMPGKQM+IDADLNAGLI + +A+ RR+ ++ EA+FYGAMDGA Sbjct: 138 TKGATRIGEVAARFTLDAMPGKQMSIDADLNAGLITEKEARERREKLSREAEFYGAMDGA 197 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 KFV GDA+AG++I+ IN+IGG+ +G+ + +S A Q Y L+T+GDGLV+QIPS +++ Sbjct: 198 GKFVSGDAVAGIIIVLINIIGGIVMGM-RSGMSVSEAMQHYTLLTVGDGLVSQIPSFIIA 256 Query: 139 TAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALL 197 TA+A+IVT+ S ++ DV QL + P+ + A GI+ + ++VPG+P +PFL+ + Sbjct: 257 TASAVIVTKTSATGENLGTDVTGQLFSQPNAIAFAGGILTLFSIVPGLPKIPFLVLAGFF 316 Query: 198 GFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 + + + E E +L T + +++ S E + ++ + L +GYKLV LVD Sbjct: 317 WMMFFVLRRSSKETELAE-ALVKETEGMAREPKKEESVEGMLRVDRMELEVGYKLVPLVD 375 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADK 317 + + +RI +R I+ G+++P IR+R+N +L+ ++Y + I G + ++ Sbjct: 376 PNKNGGILERINTLRMQIAKDMGMIVPPIRVRDNLQLETNKYVVKIRGQEIAHGELLTGS 435 Query: 318 LMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIV 377 +A+ S +++G++ DPAYG+P WI A K A +GY V+D ASV+ TH+ +I+ Sbjct: 436 YLAIDSGAVTQKVNGIETLDPAYGLPALWITDAVKEDAEALGYTVVDPASVMITHLTEII 495 Query: 378 RSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVT 436 +++ ++ +D+ +L + P + E+L ++ + ++ + LL E V +RD+ + Sbjct: 496 KTHAYEILCREDVQKLLETVKKDYPTIVEELAPNIISLGSIQEILKNLLKEQVPIRDLSS 555 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQ 495 I + + TKD L VR L R+I + + ++ V + + LE + N +++ Sbjct: 556 ILETIADYAPATKDIEQLTEYVRQRLSRTICKRYQNTEGKIGVISFDPHLEQTIANAIHK 615 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 ++G + L DPNM ++ + ++ +G + VLL +R + R Sbjct: 616 TEKGNLLAL-----DPNMAHKVIDKLAEIVRGSLTSGYEVVLLTSSSVRSHVRRLIENAL 670 Query: 556 PGLHVLSYNEVPDELELKIMGAL 578 P L VLSY E+ + + +G + Sbjct: 671 PQLAVLSYKEISPGVMIDSVGVV 693 >UniRef50_C9XJ39 Flagellar export protein n=7 Tax=Clostridium RepID=C9XJ39_CLODC Length = 691 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 201/568 (35%), Positives = 323/568 (56%), Gaps = 9/568 (1%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + F+V+T G+ R+SEV+ARFTLDAMPGKQM+IDADLNAG+I+ A+ RRK++ EADFY Sbjct: 121 VQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGVIDDKTARKRRKELQQEADFY 180 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 G+MDGA+KFV+GDAIAG+++ AIN+IGG+ IG N++ A Q YV +TIGDGLV+QI Sbjct: 181 GSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNMTLMGAAQTYVRLTIGDGLVSQI 240 Query: 133 PSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 P+LL+ST+A IIVTR S + + V QL A P + ++ VL ++PG+P F Sbjct: 241 PALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKAVMMTGCVLIVLGMMPGLPKPAFFS 300 Query: 193 FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 G+ + + E+ E + +E + I +E I + +GY L Sbjct: 301 LGIGAIAAGYFLGR-EKKDTLEDLEFEKPDMVNPDKNEVEDVTNLI-NVESIEVEIGYGL 358 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 ++L D++ G L QRI +R+ + G+++ IRIR+N +L P+QY I I G + Sbjct: 359 ISLADESAGGDLLQRIASIRRQCAIDMGIVVQPIRIRDNLQLNPNQYNIKIKGNVVGGYE 418 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 I + ++ + I G++ +P +G+ WI++ + A GY V+DS++++ TH Sbjct: 419 IMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEALWIESDKVEDAEIKGYTVVDSSTILITH 478 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSL 431 + I++S +L ++ + + + ++L + ++ KV + LL E V++ Sbjct: 479 LLDIIKSNAHELLGRQEVKTIIDAARENYSAVVDELIPDLMTLGEIQKVLKNLLREKVNI 538 Query: 432 RDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLT 490 +D VTI L S TKD LL VR+AL RSI + V + + V TL+ E E L++ Sbjct: 539 KDRVTILETLADQSRNTKDIELLTEYVRIALARSICNNLVDDDKTIVVATLSPETEELVS 598 Query: 491 NVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARY 550 N + ++ G VDP N+ ++ +V + PV++V P++R + Sbjct: 599 NNLQRSVNGTY-----PAVDPENTNKIFESIQEVMNNVYFNHNIPVIVVSPKIRAPFRKL 653 Query: 551 ARLFAPGLHVLSYNEVPDELELKIMGAL 578 + P L VLS NE+P+++++K G + Sbjct: 654 VEIVYPNLTVLSLNEIPNDIKIKAEGVV 681 >UniRef50_C1SNG5 Flagellar biosynthesis protein FlhA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG5_9BACT Length = 696 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 193/567 (34%), Positives = 342/567 (60%), Gaps = 8/567 (1%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKG+ RI+EV+ARFTLDAMPGKQMAIDADLN GLI + +A+ +R+ + EAD+YG Sbjct: 132 NFMVITKGSGRIAEVAARFTLDAMPGKQMAIDADLNTGLITEDEAKAKREKIQKEADYYG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDAIAG++I AIN++GG+ IG+F++++ A + ++ ++TIGDGLV+QIP Sbjct: 192 AMDGASKFVRGDAIAGIIITAINILGGLLIGVFQHDMPAGESAARFTILTIGDGLVSQIP 251 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 SL++ST+A +IV+R + D++ + QL +S VL A I+ A+VPG+P + F+ Sbjct: 252 SLIISTSAGLIVSRAGGSADLSGQLFTQLFSSTKVLGIAGAILLFFALVPGLPKISFISI 311 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 +AL+ + + +SK +++ E + ++ + + ++ + L +G+ L+ Sbjct: 312 AALMFYLVY-ISKGKKNELEKKEKEEATKEKEHKDVPEEEEVKNLLEMDLMELEIGFGLI 370 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD QG L RI+ +R+ I+ G ++P +RIR+N +L + Y++ + ++ I Sbjct: 371 PLVDTNQGGTLLSRIKAIRRQIALEMGFIVPPVRIRDNLQLDANGYSVMLKSVRVATGTI 430 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 +K + + +IDG+ +PA+G+ W+ K A GY ++D ++VIATH+ Sbjct: 431 FPEKYLIMNPEGDITKIDGIPTKEPAFGLEAKWVDEPVKDIAEMEGYTIVDPSTVIATHL 490 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 +I++ +L + +L ++L P+L +D+ + L+ + +V ++LL E VS+R Sbjct: 491 TEIIKKNAHELLGRQETQELLDKLKEKYPKLVDDVIPSILDLGTVNRVLQSLLKERVSIR 550 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTVYTLNNELENLLTN 491 ++ T+ VL K+ L VRL L+R IT L V+TL +++E +L + Sbjct: 551 NLQTVMEVLATFGMQNKNPDYLIEKVRLTLKRQITEAMTSADGSLYVFTLPSKIEQMLAS 610 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + G +++ +DP + + S + + E+ + G P++++ P +R + R+ Sbjct: 611 SLQNTDDGQEIV-----IDPTLAQKILSGIMKKTEECVSKGLPPLMIISPPIRLPMRRFV 665 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 F P ++++S+NE+ + + ++ +G L Sbjct: 666 EKFVPNVNIMSHNEISESVRIESLGML 692 >UniRef50_A3U131 Flagellar biosynthesis protein n=6 Tax=Rhodobacteraceae RepID=A3U131_9RHOB Length = 701 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 182/573 (31%), Positives = 301/573 (52%), Gaps = 8/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+V+TKG+ RI+EVSARF+LD+MPGKQMAIDADL AGLI++ +A+TRRK + Sbjct: 133 FAILVVINFLVITKGSTRIAEVSARFSLDSMPGKQMAIDADLGAGLIDEQEAKTRRKTLE 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGASKFVRGDA+AG++I IN+IGG+ IG+ +Y+LS A Y +TIGD Sbjct: 193 DESGFFGAMDGASKFVRGDAVAGIIITLINVIGGILIGVMQYDLSVADAANSYTTLTIGD 252 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV Q+P+L++S AA +IVT+ G V QL P LY A G++ + ++PG P Sbjct: 253 GLVTQVPALIVSLAAGLIVTKGGTEGAANEAVLGQLSRFPKALYMAAGLLAGMGLLPGFP 312 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F L+ GW + +Q AE++ + + + ++ + ++ ++ + L Sbjct: 313 TIVFFALGGLMAGLGWYIGQQEERL-AEDRRRAEIEKERAGAAAKEETVQSTMKLDDLRL 371 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G LV L+ A L +I+ +R + + G +LP +RI + L + YA+ + G+ Sbjct: 372 EMGEALVPLMSAADAA-LPGKIKSLRNLFAREFGFVLPSVRITDEPSLPMNSYAVLVQGV 430 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ + +M + S+ ++ G DP +G+ WIQ Q +A GY V+D Sbjct: 431 EVARGEVRPNGMMVVNPSDNPLQMAGEAAKDPTFGLDALWIQPQQAGEAERQGYTVVDPE 490 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 SVI TH+ ++V+ ++PDL Y L L +L ++ + V + LL Sbjct: 491 SVITTHLTEVVKEHMPDLLTYGATQGLIENLDRDYQKLVGEIGGTSPAIMIQHVLQGLLG 550 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNEL 485 E VS+R++ I + + T + + VR L I + + V TL+ + Sbjct: 551 ERVSVRNLPLIVEAIAEAKRTTSNVTGIIEHVRRRLSNQICKSLTDESGMIPVITLSQKW 610 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 + + + +++ P + +F + + A + P +LV P R Sbjct: 611 DQEFVDSIRMNGDDKTLIM-----SPQRIQEFVLDARRTIQTHAAEDRWPAILVSPDARS 665 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + +P V+S+NEV L+ + + Sbjct: 666 FIRNMLERVSPMTQVISHNEVHRNANLRTLATI 698 >UniRef50_B6AMB1 Possible flagellar biosynthetic protein FlhA n=2 Tax=Leptospirillum RepID=B6AMB1_9BACT Length = 702 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 208/560 (37%), Positives = 328/560 (58%), Gaps = 17/560 (3%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 T+GA RI+EV+ARFTLDA+PGKQMAIDADLN+G I + +A+ RRK+++ E++FYGAMDGA Sbjct: 143 TRGAGRIAEVAARFTLDALPGKQMAIDADLNSGAIKEEEARKRRKELSRESEFYGAMDGA 202 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDA+A ++IL +N++GG+ IG+ L A Y L+TIG+GLVAQ+P+L++S Sbjct: 203 SKFVRGDAVAAILILFVNILGGLVIGMVLKGLDLPEALHNYTLLTIGEGLVAQLPALIVS 262 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA I+VTR D+ ++R Q+L P L A+GI+F+L+V+PG+PH F L +++ G Sbjct: 263 VAAGIVVTRAGSGNDLGSEIREQVLTRPRPLGGASGILFLLSVIPGLPHAAFFLLASVTG 322 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 +R + E+K L + ET ++ + L++GY LV LV+ Sbjct: 323 LMAYRRT------TLEKKKARELQAEEKTVPPPAENVETYLSLDLLELNVGYGLVDLVEG 376 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 G+ LT RIRG+R+ ++ G+++P I IR+N +LKP +Y + + G ++ D L Sbjct: 377 KAGSNLTDRIRGIRRQLAQEMGIIVPPIHIRDNLQLKPDEYVVLLKGAPVARWELLPDSL 436 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ ++G+ +P +G+P TWI + + G+ V+D +V++TH+ +++R Sbjct: 437 LAMNPGMEPVTVEGIPVKEPTFGLPATWIAPDAREEVEAQGFTVVDPLTVLSTHLTEVIR 496 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 S+ +L ++ +L + L PRL EDL ++ L+ V ALL+E VS+RD+ TI Sbjct: 497 SHAAELVGRQEVQRLLDALGKDYPRLVEDLVPGQVSLGVLVSVLHALLSERVSIRDLRTI 556 Query: 438 ATVLVA---SSTVTKDHILLAADVRLALRRSITHPFVRK--QELTVYTLNNELENLLTNV 492 + + +KD LA VR AL RSI +P++ + L V T + E + Sbjct: 557 LEAVSDQIAAGRDSKDVTGLAEGVRQALGRSIVNPYLAGKARSLPVVTFDRRWEEVFMKQ 616 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 +Q G ++L +P + + S + QV E + G PVLLV Q R + R+ Sbjct: 617 ASQTPPGSPLVL-----EPGLAQKLLSGLGQVMESLGRKGVQPVLLVSAQTRVPVRRFLE 671 Query: 553 LFAPGLHVLSYNEVPDELEL 572 + L VLS EVP ++ + Sbjct: 672 RYFSSLPVLSPMEVPKDVPI 691 >UniRef50_D2QZ28 Flagellar biosynthesis protein FlhA n=3 Tax=Planctomycetaceae RepID=D2QZ28_9PLAN Length = 690 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 202/562 (35%), Positives = 326/562 (58%), Gaps = 10/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPGKQMAIDADLNAG+I+ +AQ RR++VA +ADF+GAMDGA Sbjct: 131 TKGATRISEVAARFALDGMPGKQMAIDADLNAGIIDDKEAQRRREEVAQQADFFGAMDGA 190 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I +N++GG IG+ +Y + + + + ++IGDGLV+Q+P+ L S Sbjct: 191 SKFVRGDAIAGIIITLVNVLGGFVIGVVQYRMDIAESAEVFTKLSIGDGLVSQVPAFLTS 250 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA ++ TR S ++ QL ++P L A G + VL V+ +P +P L A G Sbjct: 251 LAAGLLTTRSSQKQNLPMVFLQQLFSNPQTLIVAGGFVAVL-VLTNLPKIPLLAIGAGCG 309 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 +S++ + EA+ + T+ +E+++ E ++P+ + +G L+ L + Sbjct: 310 GLALMLSRKQKSEEAKAVTDAKAAEAATKPAEERI--EDFLSVDPMEIEIGAGLIRLANP 367 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 QG L RI VRQ +++ G++LP++R+++ RL QY I I+G ++ K Sbjct: 368 KQGGDLLPRITAVRQGVANDIGIILPKVRVKDFTRLGEYQYRIKISGNVVATGEVLPGKF 427 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ S T G++ G++ DPA+ P WI + + +A MGY ++ +V+ATH+ ++VR Sbjct: 428 LAIDSGATTGKVPGIETRDPAFNQPAVWIDSGLRERAQMMGYTTVEPTAVLATHLQEVVR 487 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L D L + L T+P + ++L A + S + +V + LL E VS+R++ TI Sbjct: 488 RHADELLTRDATKHLLDELKKTSPAVVDELVPAPMKISDVQQVLQMLLREEVSIRNLSTI 547 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L +T TKD + L VR L R+I+ + + + V TL+ LE+ + V + Sbjct: 548 LETLGDWATKTKDPVFLTEYVRNRLSRTISSRYRDAENRMHVLTLDPALEDRIAAGVEHS 607 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 ++G V L P ++ + + ++ GK P++LV PQ+R L P Sbjct: 608 ERGLFVRL-----QPAVVERVCERISGELTKLTRGGKRPLVLVSPQIRAGLKLMTSGNLP 662 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 LHVLS+NEV + ++ I+G + Sbjct: 663 RLHVLSFNEVTRDTKVDILGVV 684 >UniRef50_C2KYZ6 Flagellar biosynthesis protein FlhA n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ6_9FIRM Length = 718 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 198/613 (32%), Positives = 316/613 (51%), Gaps = 40/613 (6%) Query: 1 MLSRSD-------LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 + R + L ++ + FIV+TKGAER+SEV+ARF LDAMPGKQMAIDADL++G+I Sbjct: 99 FVVRGNVVVGLIIYLIIVLMQFIVITKGAERVSEVAARFKLDAMPGKQMAIDADLSSGMI 158 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 + QA+ RR+ + E+DFYG+MDGA+K V+GD + ++ AINL+GG IGI + Sbjct: 159 TEQQARERREKIQRESDFYGSMDGATKIVKGDGVMSLITTAINLVGGSIIGIVQSGQPVA 218 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTAT 173 Y + T+GDGLV QIPSLL+S + +IVTR G + DV Q P + Sbjct: 219 TVLSTYSIATVGDGLVGQIPSLLISVSTGMIVTRAVSEGSLNEDVSKQFTQQPRSMMITG 278 Query: 174 GIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAA---------------EAEEKSL 218 M VL ++PGMP L L + G+ + K+ EA + Sbjct: 279 IAMGVLMLIPGMPILQILPVAGGFIAAGYFLEKRIKEEPERARTEGEGLLPSMEAPPQPQ 338 Query: 219 ETLTRTITETSEQQVS-------WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGV 271 E + +E + + +EPI + GY L+ L D++ G L QRI Sbjct: 339 EAQGEAASAPAESEEDYFKDVNNVYNLLQVEPIEMDFGYSLIPLADESVGGRLIQRIVIF 398 Query: 272 RQVISDGNGVLLP-EIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEI 330 R+ + G ++P IR+R++ L ++Y+I I G + + +I D ++AL + I Sbjct: 399 RRQYAQDIGFVVPSSIRLRDSSSLGTNEYSIKIKGEEIAKGEILTDYVLALEPDDVEDAI 458 Query: 331 DGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDI 390 DG++ +PAYG+P WI+ + +A GY VID SV+ +H+++ ++ + +L ++ Sbjct: 459 DGIETIEPAYGIPSKWIRPENRERAELYGYTVIDPLSVMLSHLSETIKRHAYELMTRQEV 518 Query: 391 TQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVT- 448 +L L TAP L E+ ++Y+ L KV LL EGVS++D+ TI + + T Sbjct: 519 VRLVENLKKTAPELCEEAFPGVISYNLLQKVLTTLLREGVSIKDLETIVETMFECISETG 578 Query: 449 ---KDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLD 505 KD + VR +L+R+IT + + V TL+ LE + N + + + G + L Sbjct: 579 LPVKDTDQIVEKVRASLKRTITRMYCEDGNMKVITLDAGLERTMVNSLARGENGLYLAL- 637 Query: 506 SVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNE 565 P +L + + + P++L +R F P + VLS+NE Sbjct: 638 ----SPELLQSLIRQVAEESRKFNNLSSPPLILTSQVMRIHFYHLIEQFYPNVRVLSFNE 693 Query: 566 VPDELELKIMGAL 578 V ++++ +G+L Sbjct: 694 VASNVQIQAIGSL 706 >UniRef50_C9R9X8 Flagellar biosynthesis protein FlhA n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X8_AMMDK Length = 684 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 192/573 (33%), Positives = 309/573 (53%), Gaps = 16/573 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+T GA R++EV+ARF LD++PGKQMAID D NAGLI +A+A+ RR+ + Sbjct: 122 FLIITVVQFVVITNGANRVAEVAARFCLDSLPGKQMAIDGDFNAGLITEAEARERRRRLQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGA+KFVRGDAIA ++I+ IN++GG +G+ + A + Y L+TIG+ Sbjct: 182 READFFGAMDGAAKFVRGDAIASLVIILINILGGFVVGMVLKGMDLTTALRTYTLLTIGE 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+LL+ST+A ++VTR + QL A P +L+ A I +L +VPG+P Sbjct: 242 GLVTQIPALLVSTSAGVLVTRSGAEAAFGREFPRQLAAFPRILFVAAAIFILLGLVPGLP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HL L G G+ + ++ T + + T +EP+ + Sbjct: 302 HLLLLSIGGATGALGYFLEEERKKQIKAAAPPAPPKEKRT----EPENVLTYFQVEPLEI 357 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY LV L + QG L R+ VR+ + G+ + IRIR+N +L P+ Y + GI Sbjct: 358 ELGYGLVPLAQEEQGGDLLARVAAVRRQCAAELGIYVRPIRIRDNLQLPPNVYLFRLRGI 417 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 +A ++ +A+ +++G+ +P +G+P WI A K KA G+ V++ + Sbjct: 418 EAARGELMPGYYLAVSP-MGEAKLEGIATKEPVFGLPAWWISPADKEKAEAAGFTVVEPS 476 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ATH+++ ++ P L + +L + + P L E+L L ++ KV + LL Sbjct: 477 AVLATHLSEFIKQNAPLLLGRQETRELLDAIKEKYPALVEELVPGLLGLGEVQKVLQGLL 536 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 E V ++D+V+I L ++ V++D L R AL R IT + R +L+V TL+ Sbjct: 537 EERVPIKDLVSILEALADAARVSRDPDFLLEQARAALSRVITQQYARDNKLSVLTLHPRW 596 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L+ + + ++P + + + Q E G PV+L P R Sbjct: 597 EERLSQAKEEGK----------VLEPREVQRLLEKVGQAVEGALRRGIAPVILCAPGARL 646 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LL R P + V+SY EV ++ ++ +G + Sbjct: 647 LLRRLIAAKFPQVAVISYREVWPQVTVEAVGTV 679 >UniRef50_Q1D9J0 Type III secretion protein LcrD/AscV n=4 Tax=Bacteria RepID=Q1D9J0_MYXXD Length = 707 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 186/591 (31%), Positives = 293/591 (49%), Gaps = 24/591 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ +NFIV++KG+ER++EV+ARFTLDAMPGKQM+IDADL AG I+Q Q + +R+D+ Sbjct: 119 FIILVIVNFIVISKGSERVAEVAARFTLDAMPGKQMSIDADLRAGSIDQDQGKKKRRDLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIA ++I +N++GG+ IG+ + +SA A Q+Y L+TIGD Sbjct: 179 RESQLFGAMDGAMKFVKGDAIASIIITVVNIVGGLIIGVTQKGMSAGDAAQKYTLLTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD---IAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV IP++L+ST A IIVTRV+ + + D+ +QL A P + A G++ VL +VP Sbjct: 239 GLVGMIPAILVSTCAGIIVTRVAGEEEGNHLGMDMGSQLTAYPKAIAIAAGMLIVLGLVP 298 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLT---------RTITETSEQQVS 234 G+P +PF L G W M K+ A E + + + + S Sbjct: 299 GLPKIPFFLLGIGAGLGAWTMLKKQQQAVEAEDAGPAMETDLGTPMASEPAPKEALNPDS 358 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQ--GNPLTQRIRGVRQVISDGNGVLLPEIRIRENF 292 IP++ PI L + LV VD Q G L + I +R + GV P +R R N Sbjct: 359 ELFIPVVTPIVLEVSDALVPFVDSRQDNGKFLFELIPFMRDGLFVELGVRFPGVRARGNG 418 Query: 293 RLKPSQYAIFINGIKADEADIPADKLMALP--SSETYGEIDGVQGNDPAYGMPVTWIQAA 350 L P Y I IN + ++ I G + +PA P W+ Sbjct: 419 SLPPGAYQIQINEVPVVTGQATLGHVLVNDTVDRLRLMNIQGFEAVNPATRQPAAWVPEQ 478 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LS 409 + G D I H ++R + + + +L P + ++ + Sbjct: 479 YRDTLEAAGLTTWDVPGYIILHTAAVLRRNAREFVGVQETQTMLEQLEKAFPAIVKEVVP 538 Query: 410 AALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP 469 +N +L + + L+ E +S+RD+ I L V D+++L VR A RR I+H Sbjct: 539 KVVNVLKLTDILQRLVEEEISIRDLRGILQALAEYGQVEADNVMLTEHVRAAQRRYISHK 598 Query: 470 FVRK-QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQM 528 + R L VY L+ +E+ + V + G + L +P + + + + Sbjct: 599 YARGTGTLVVYLLDPNIEDAIRGSVKRTSAGAHLAL-----EPELAQEIVQAVRSECGHL 653 Query: 529 KAAGKDPVLLVPPQLRPLLARYAR-LFAPGLHVLSYNEVPDELELKIMGAL 578 + + PV+L +R + + F P VLSY E+ EL ++ + + Sbjct: 654 PPSAQRPVILTAMDIRRYVRKLLEYEFNPSFSVLSYQELSPELNIQPVARI 704 >UniRef50_Q0EZ54 Probable flagellar biosynthesis protein (FlhA) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ54_9PROT Length = 694 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 205/567 (36%), Positives = 328/567 (57%), Gaps = 13/567 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V++KG+ RI+EV+ARFTLDAMPGKQMAIDAD+NAGLIN+A+A+ RR++VA EA+FYG Sbjct: 133 NFVVISKGSTRIAEVAARFTLDAMPGKQMAIDADMNAGLINEAEARVRRENVAREAEFYG 192 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDA+AG++I INL+GG+ IG+ ++ +S A + L+T+GDGLV+QIP Sbjct: 193 AMDGASKFVRGDAVAGLIITVINLVGGLIIGVMQHGMSVTDAMSVFSLLTVGDGLVSQIP 252 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STAA II+TR S N + +++ Q A P V + A G +F++++VPG+P +PFL+ Sbjct: 253 ALVISTAAGIIITRASSNKSLPIELKAQFTAHPKVHWVAAGALFLMSLVPGLPFIPFLIL 312 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 S LG +G+ + E T + + + + +PI L +GY L+ Sbjct: 313 SLGLGASGYYLQLGQQQKGLE---TIAEDVTPLAEPMGEEELDDLLVEDPIRLEIGYGLI 369 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 +V+ + L R++ VR+ I+ G +LP + I++N +L S Y I I G + +I Sbjct: 370 DMVEGGREGNLLDRMKKVRRQITQEIGFVLPPVHIKDNLQLGVSDYQILIRGAIVGKGEI 429 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 L+AL S + ++G+ +PA+G+P WI ++ +A GY V++ +VI TH+ Sbjct: 430 RPRNLLALESQISGPPVEGIATQEPAFGLPAVWISEDKRQQAELSGYTVVEPTTVIITHL 489 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLR 432 +++R ++ + + L + + P++ E+ + + + L V + LL E V +R Sbjct: 490 TELLRGQAAEMLDRTQVHDLLEKFAQRHPKVVEEIVPSQVPVGLLQNVLQRLLVEWVPIR 549 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLNNELENLLTN 491 D++ I L + L VR L R+IT ++ EL V+ L+ ELE ++ Sbjct: 550 DLMLILEALSDHAGEHLSIDDLVEKVRTRLGRTITQRYLNAQGELAVFMLDGELEQRMSE 609 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 ++Q QQG + LD +F S + ++ PVLL PQLR L R Sbjct: 610 RMSQ-QQGWALPLDMPEW-----QRFISRVNEISSHFDVD--IPVLLTTPQLRGHLTRAL 661 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 R + VLS E+P + ++ + + Sbjct: 662 RKVMTRIAVLSIAEIPPQTNIQSLAKV 688 >UniRef50_A3ZZP0 Flagella-associated protein n=2 Tax=Planctomycetaceae RepID=A3ZZP0_9PLAN Length = 695 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 197/562 (35%), Positives = 312/562 (55%), Gaps = 10/562 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA RISEV+ARF LD MPG+QMAIDADLNAG+I++ +AQ RR ++ +ADF+GAMDGA Sbjct: 135 TKGATRISEVAARFALDGMPGRQMAIDADLNAGIIDEHEAQARRSEITQQADFFGAMDGA 194 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFVRGDAIAG++I IN++GG IG + +S A + Y +TIGDGLV+Q+P+ L+S Sbjct: 195 SKFVRGDAIAGIIITLINIVGGFIIG-LQAGMSLAEAAEVYTKLTIGDGLVSQVPAFLIS 253 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 AA ++VTR S ++ + QLL+ P L A + +L V G+P +P L Sbjct: 254 LAAGLLVTRSSQKTNLPLEFVQQLLSRPPALIVAGAFLGLL-VFTGLPTIPLLTLCGGCL 312 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 + + KQ EA++++ ET + + ++++ E I+P+ + LG LV L Sbjct: 313 GIAFFIKKQDRQDEADKQTAETKKQDQEKAAKKEDRIEDYLSIDPMEMELGVGLVRLAAP 372 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 +G L R+ GVRQ ++ G++LP++RIR+N RL +QY I I E I D+L Sbjct: 373 DRGGDLLHRVTGVRQNVATEVGIILPKVRIRDNMRLHENQYRIKITNNTVAENTIYPDRL 432 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 +A+ + G + G DPAY P WI+ + +A +GY +++ +SV+ATH+ ++ + Sbjct: 433 LAITGPNSQGNLPGEPTRDPAYNQPAVWIEPGLRPQAEMLGYTIVEPSSVLATHLQRVAK 492 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLRDIVTI 437 + +L D L + L +P + ++L + + V LL E V +R + I Sbjct: 493 KHADELLTRDATKHLLDDLKLESPAVVDELIPGVMKLGDVQAVLHNLLREEVPIRQLAII 552 Query: 438 ATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQA 496 L + TKD I L VR L R+I + + ++ V L+ +++ + + Sbjct: 553 LETLGDHAGRTKDAIWLTEFVRHRLARTICTKYRDRENKMFVVPLDPAMQDRIAAGI-DT 611 Query: 497 QQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAP 556 ++G + P + + E++ A GK P++LV PQ+RP L + P Sbjct: 612 ERGPYARM-----SPQAIELTCRAVAAGIEKLLAVGKPPIVLVNPQIRPALKQLTMNHIP 666 Query: 557 GLHVLSYNEVPDELELKIMGAL 578 L VLS+NEV + ++ +G + Sbjct: 667 DLIVLSHNEVTRDTLIESVGII 688 >UniRef50_B1ZR28 Flagellar biosynthesis protein FlhA n=3 Tax=Verrucomicrobia RepID=B1ZR28_OPITP Length = 712 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 192/592 (32%), Positives = 311/592 (52%), Gaps = 25/592 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EVSARFTLDA+PGKQMAIDA+LNAG+I++ QA RR V Sbjct: 109 FLILVVINFVVITKGAGRIAEVSARFTLDALPGKQMAIDAELNAGIIDEVQATARRVKVQ 168 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAG++I +N+IGG IG+ + LS + Q++ L++IGD Sbjct: 169 KEADFYGAMDGASKFVRGDAIAGIIITLVNVIGGFAIGVLQMGLSLGESLQKFTLLSIGD 228 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIPSL+LS AA ++VTR S+N ++ H + Q+ P + A G++ ++PGMP Sbjct: 229 GLVSQIPSLVLSVAAGVLVTRASENNNLGHQLAGQMFRYPRAMKIAAGMLMCFGIMPGMP 288 Query: 187 HLPFLLFSALLGFTGWRMSKQPLA------------------AEAEEKSLETLTRTITET 228 LPF +A F G + Q A + + Sbjct: 289 LLPFAGLAAFSWFLGKMLKDQEDKTGHALGAEAAAAEKAAAGKSAGKGAAGGAAGAAAPA 348 Query: 229 SEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRI 288 S + ++ ++ LGY L+ L + G L R+ GVR+ ++ G+++P + + Sbjct: 349 SGPTEDVRKLIEVDVFAIELGYGLLNLANAKAGGDLLARVTGVRKTLAREKGIVVPPVAV 408 Query: 289 RENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQ 348 R+N L+P+ Y + G + ++ +A+ + + + GV ++P + + TWI Sbjct: 409 RDNLELEPNDYRFLLRGKALARGQLHPNRWLAMNVAASKVRLRGVPTHEPVFNLEATWID 468 Query: 349 AAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED- 407 +K A GY V+D ASV+ TH+++ +++ L ++ L + L T P L + Sbjct: 469 EPEKKTAEINGYTVVDPASVLITHLSETLKANAHHLLGRQEVQSLVDFLKQTQPALVAEL 528 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 L + + +V + LL E +S+ ++ I + ++++K+ L+ +R L Sbjct: 529 LPDLVTLGIIQRVLQNLLRENISIVNLPLILEGIGDFASLSKNPDDLSELIRRRLGLYFV 588 Query: 468 HPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 F VR + T++ E L V ++ + L DP + + Sbjct: 589 PEFEVRPGVVRAVTVDPRFEQWLGTKVQRSPTEVGLAL-----DPATTRHVLDELNRRIA 643 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ A G VL+V ++R L R+ P L VL++ E+P E++ G + Sbjct: 644 ELTAQGHPTVLVVSSEVRLPLKRFFESSFPRLTVLAFQELPAATEIENAGIV 695 >UniRef50_A9BHY7 Flagellar biosynthesis protein FlhA n=11 Tax=Thermotogaceae RepID=A9BHY7_PETMO Length = 710 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 198/579 (34%), Positives = 317/579 (54%), Gaps = 23/579 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+TKG ERISEV+ARFTLDAMPGKQM+IDAD+++GLIN+ +A+ RR+D+ EADFYG Sbjct: 123 QFLVITKGTERISEVAARFTLDAMPGKQMSIDADMSSGLINEEEARQRREDIRREADFYG 182 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFVRGDAIAG++I INL+GG+ IG+ + L+ A + + L+T+GDGLVAQIP Sbjct: 183 AMDGASKFVRGDAIAGLIITLINLVGGLIIGMLQQGLTIAEAAEVFALLTVGDGLVAQIP 242 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +LL+ST+A +IV+R + + D+ QL + VL A GI+ VL ++ +P P L+ Sbjct: 243 ALLISTSAGMIVSRAASKDNFGVDLIRQLTSDTRVLNIAGGIIIVLGLLTPIPVFPSLIL 302 Query: 194 SALLGFTGW--RMSKQPLAAEAEEKSLETLTRTITETSEQ-------------QVSWETI 238 A L F + R ++ LA E + + + +E+ + Sbjct: 303 GAGLLFVAYANRANEGQLAYETTGSAGVGMGTSAAPKAEKRGVSGGFAPPLTTPEEVSEV 362 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 + I + +GY L+ L D QG L RI VR+ ++ G+++ IRIR++ L ++ Sbjct: 363 LQGDTIEVDIGYGLIPLADPDQGGDLLDRITVVRKQLAYELGIVISPIRIRDSVLLSSNE 422 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y I + G++ ++ D+L+A+ S E+ G++ +PA+G+ WI + K +A+ Sbjct: 423 YVIKLRGVEVGRFELIPDRLLAINSGMATEELPGIKTKEPAFGLVAFWIDESLKEEAIEK 482 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQL 417 GY +D+ SV ATH+++ ++ Y ++ +I L + L L + L L +L Sbjct: 483 GYTTVDAPSVFATHLSETIKKYAHEIIGTKEIEILIDGLRVNYANLVDTLIPTMLKMHEL 542 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVT-KDHILLAADVRLALRRSITHPF-VRKQE 475 KV LL E VS+R++ I L+ + + L VR +L R I E Sbjct: 543 KKVLSELLYERVSIRNLPLIFESLIEGADKYGNNIENLVEYVRRSLGRQIVENLKSDDGE 602 Query: 476 LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 L V L+ +E L+ + + G ++L +P N + + E M G +P Sbjct: 603 LHVSALDPTIEKKLSESIRDSDSGRVIIL-----EPEYSNILVQRISKSLENMMMKGFNP 657 Query: 536 VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 +L+ +R AR+ F + +++Y E+P + L + Sbjct: 658 ILICSKNIRYPFARFTLKFVQNISIVAYEEIPSDTSLNV 696 >UniRef50_Q2RZE9 Flagellar biosynthesis protein FlhA n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZE9_SALRD Length = 693 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 196/572 (34%), Positives = 330/572 (57%), Gaps = 7/572 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKG ERISEV+ARFTLDAMPGKQMAIDADLN+GLI++ +A+ RR +V Sbjct: 102 FLVLVIINFVVITKGTERISEVAARFTLDAMPGKQMAIDADLNSGLIDEREARERRDEVT 161 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGA+KFVRG+A+AG++I AIN++GG+ IG+ + + A + L++IGD Sbjct: 162 EEADFYGAMDGATKFVRGEAVAGILITAINVVGGLVIGVTQQAMGIGEAASTFALLSIGD 221 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD-NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP+L++STAA IIV+R S G +A +++ QLL P L + V+ VPG+ Sbjct: 222 GLVSQIPALMVSTAAGIIVSRASGEEGSLASEMKGQLLDKPPPLLITGCFLGVMGFVPGL 281 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P +PF L SA + + SK+ A + E + E + + L++P+ Sbjct: 282 PIIPFWLLSAGVLLLWYLRSKEKKAEDEAEAERQREAEEQQAEEEAEEDPSDLLLVDPLE 341 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L +GY L++LVD QG L +R++ +R+ +++ G+++P +RIR+N + ++Y I + G Sbjct: 342 LEIGYGLISLVDPDQGGDLLERVKMLRKQLAEEMGLVIPPVRIRDNVDMDSNKYVIRLRG 401 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 E + +AL + G++ DP +G+P W+ ++A MG VI+ Sbjct: 402 NPIGEGQVMPGYKLALLPDDVDEAPSGIRVEDPTFGLPAVWVAERNLSEAEQMGLTVIEP 461 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRAL 424 +VI+TH+ + +R L + ++ ++ +++ +AP L ++L L+ + KV + L Sbjct: 462 PAVISTHLLEELRKNAYRLLDRQEVREMLDKVEESAPALVDELVPDLLSLGSIRKVLQRL 521 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNN 483 L E + +RD+VTI L ++ T+ +L R AL +IT F + + + ++ Sbjct: 522 LEERIPIRDLVTILETLADHASQTQTVEVLTEHCRAALAPTITREFSGPEGRIKAFVMDP 581 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 LE L + G + +++ + P + + + ++ + + P+LL+ P L Sbjct: 582 ALEQHLLE----TAESGGLDANTLGLQPERADALVKAIDEQATELISNDRAPILLISPVL 637 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIM 575 R + ++ + VLSYN++ + + I+ Sbjct: 638 RATVYQFLDPMVSDITVLSYNDLTPDAPVDIV 669 >UniRef50_A0LT74 Flagellar biosynthesis protein FlhA n=15 Tax=Bacteria RepID=A0LT74_ACIC1 Length = 708 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 204/566 (36%), Positives = 320/566 (56%), Gaps = 13/566 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+T GA R++EV ARFTLDAMPGKQMAIDADLNAGLI++A+A+ RR ++A+EADFYG Sbjct: 147 QFVVITNGAGRVAEVGARFTLDAMPGKQMAIDADLNAGLIDEAEARRRRSEIAAEADFYG 206 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIA ++I +NLIGG+ IGI + +LS A Y L+++GDGLV+QIP Sbjct: 207 AMDGASKFVKGDAIAAVVITGVNLIGGLAIGILQRHLSIGEAVNTYSLLSVGDGLVSQIP 266 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +LLLS + +IVTR + D+ DV Q+ + + + V+A++PG+P LPFL+ Sbjct: 267 ALLLSVSTGLIVTRGASEADMGADVLRQIASQRQAIRIGGAAILVIALIPGLPKLPFLIL 326 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 G R+ + P AE + + + + + +EP+ L+L + LV Sbjct: 327 GGAALALGMRLKEPPKPAEPQPAAEPAAPAPDSPEALVEEM-----RVEPLELNLAFDLV 381 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 LVD+++G L +R+R +R+ ++ G+++P +R R+N L P YAI +NG++ + Sbjct: 382 DLVDQSRGGELLERVRALRRKLALELGMVIPMVRTRDNLDLPPGSYAIRVNGVEVARGEA 441 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 P ++A+ E + G +P +G+P W+ + +A +G V+D ASVI TH+ Sbjct: 442 PPGAMLAI--GENLTNLPGTATIEPVFGLPGKWLAPELRQQAEMLGATVVDRASVITTHL 499 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 ++VR L + +D+ L T P + E+L A L + +V + LL E V +R Sbjct: 500 AEVVRDNAAKLLSREDVKTLTELTRRTHPVVVEELTPALLQLGDIQRVLQGLLDEHVPIR 559 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNV 492 D+ I L + V++D L R L +I+ + + L+V T++ E L + Sbjct: 560 DLPRIFEALSQRARVSQDPEGLIEAARATLGPAISAAYAQDGRLSVLTIDPLTEQRLVDK 619 Query: 493 VNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYAR 552 + + G + L DP+ + ++ E+ + G PVL LRP L R R Sbjct: 620 LRHGEHGSFLAL-----DPDDAEYLVGEVRRLAERAEQLGNTPVLACAAPLRPALRRLVR 674 Query: 553 LFAPGLHVLSYNEVPDELELKIMGAL 578 P L VL+Y E+ L+L+ +G + Sbjct: 675 SANPRLPVLAYGELGPHLQLETVGTV 700 >UniRef50_Q89AN5 Flagellar biosynthesis protein flhA n=2 Tax=Enterobacteriaceae RepID=FLHA_BUCBP Length = 702 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 204/570 (35%), Positives = 324/570 (56%), Gaps = 15/570 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+V+TKGA RI+EV ARFTLD MPGKQMAIDADLNAGLI + QA+ RR ++ EADFYG Sbjct: 137 NFMVITKGASRIAEVGARFTLDGMPGKQMAIDADLNAGLIGEKQAKKRRIEINQEADFYG 196 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKFVRGDAIAG++I+ +N+IGG+ IGI ++N++ A Q Y ++TIGDGLVAQIP Sbjct: 197 SMDGASKFVRGDAIAGILIMIVNIIGGLVIGILQHNMTFSQAAQVYTILTIGDGLVAQIP 256 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++STA+ +IVTRVS + +++ + +QL +P V+ + ++ VL +VPGMP++ FL+F Sbjct: 257 ALVVSTASGVIVTRVSTDQNVSEQIVSQLFCNPQVILLSGIVLGVLGLVPGMPNIIFLIF 316 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + LL F W + + P+ E +++ + T + SW + L IS+ LG L+ Sbjct: 317 TTLLFFISWLIYRNPVIFTNFESTMKKIDNT-NFCNISDASWNDVQLEGSISIELGNLLI 375 Query: 254 ALVDKA-QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 ++ + + L +IR VR+ + G L P + IR+N L + Y I I GI+ + Sbjct: 376 PMIKVNSKKSNLLDKIRNVRKKCAKNIGFLPPLVHIRDNNNLPGNCYCILIKGIEISKGT 435 Query: 313 IPADKLMALPSSETYG--EIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + K +A+ S G + + +DP + WI + +A GY + + ++VI+ Sbjct: 436 VQCGKFLAINSGNASGPLPLPAEETSDPIFKFKSFWITSELINQAKQKGYNIAEDSTVIS 495 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGV 429 TH+N I+ ++I LF + QL + +S P+L EDL ++N + +V + LL E V Sbjct: 496 THLNHIILTHISLLFGRQEAQQLLDYVSKFCPKLIEDLIPNSINLTIFHQVLQNLLIENV 555 Query: 430 SLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENL 488 +RD+ TI L+ + + D +L + VR++L + I + ++ V +++LE + Sbjct: 556 PIRDMQTILETLITHAPNYQNDSQILTSLVRISLGKLIIQNIFQNNKIEVIKFDSKLEQI 615 Query: 489 LTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLA 548 L + ++P + N + Q K VLLV LR +A Sbjct: 616 LLKTIAN---------KDSVLEPGLYNYIVVKLQQEYNNCKLKNIPCVLLVHHNLRVFIA 666 Query: 549 RYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + P + VLS E+ D ++ + Sbjct: 667 KMLLKNIPKIFVLSNLELEDVTKIYTTNII 696 >UniRef50_C1A546 Flagellar biosynthesis protein FlhA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A546_GEMAT Length = 695 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 197/571 (34%), Positives = 318/571 (55%), Gaps = 8/571 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L INFIV+TKGA RI+EV+ARFTLDAMPGKQMAIDADL+AGLI++ +A+TRR ++A Sbjct: 123 FLILTGINFIVITKGAGRIAEVAARFTLDAMPGKQMAIDADLSAGLIDEKEARTRRDEIA 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 ADFYGAMDGASK+V+GDAI G++++ +N++GG+ IG+ + + A Y ++T+GD Sbjct: 183 RTADFYGAMDGASKYVKGDAILGILVVIVNIVGGIFIGVIQRGMEIGKAASTYTILTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV Q+P+L++STAA ++VT ++N + + QL P ++ A G++ A++PG+P Sbjct: 243 GLVTQVPALIISTAAGLMVTAATNNDKMGAVLSKQLGNHPRAMWVAAGVLGSFALIPGLP 302 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 PFL +A +K E + + + E + I+PI L Sbjct: 303 MFPFLAMAAGAALLARTATKAETRR--LELATISAPVEMEELPPPPDPMRDLLQIDPIEL 360 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ L+D+ QG L +RI +R+ + G+L+P IRIR++ RL ++Y I + G Sbjct: 361 EVGYALIPLIDEGQGGDLLERISLLRKQAALELGILIPAIRIRDDIRLPANEYVIKLRGS 420 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A++ LMAL + EIDG++ DP++GMP W+ +A++ +A +GY V++ Sbjct: 421 EVARAEVLPRFLMALNTGSVVAEIDGMETVDPSFGMPARWVASARRTEAEALGYVVVEPT 480 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 +V+ATH+ + ++ +L ++ ++ L + P L E+ + ++ S L +V + LL Sbjct: 481 TVVATHLLETLKLSASELLGRQEVQEMVETLKKSHPALVEEIIPGKVSLSVLHRVLQRLL 540 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E V +RD+VTI L + T+D L R AL I F + T+ Sbjct: 541 RERVPIRDLVTILEALGDGAESTRDPEALTEVARRALTNVIARLFADQTGTVRGITIGGR 600 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE+ L + + ++ + P L + + G+ L+ PP LR Sbjct: 601 LESALVGLFSPRSS----QPNAPMLTPESLAAMLRDLNHLATTYAVDGRPLPLITPPSLR 656 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIM 575 + R P L V+S E+P ++ L + Sbjct: 657 VGVRRLIEPVLPSLPVISLAELPAQITLSSV 687 >UniRef50_B5ZM53 Flagellar biosynthesis protein FlhA n=11 Tax=Alphaproteobacteria RepID=B5ZM53_GLUDA Length = 731 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 194/575 (33%), Positives = 314/575 (54%), Gaps = 16/575 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 LL +NF+V+TKG+ RI+EV+ARF LD+MPGKQMAIDADL++G IN+ A+ +RK++ Sbjct: 169 FCILLVVNFMVITKGSGRIAEVAARFFLDSMPGKQMAIDADLSSGAINERTARAKRKELE 228 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA+KFVRGDAIAG++I AIN++GG+ IGI ++++ A + +T+GD Sbjct: 229 DESAFYGAMDGAAKFVRGDAIAGLIITAINIVGGLAIGILRHDMPLSEAASTFTTLTVGD 288 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL+STAA I+VT+ +G + QL +P L A G+ + A++PG+P Sbjct: 289 GLVSQIPALLVSTAAGIVVTKGGSDGSTDVTLVRQLGGNPKPLAVAGGLSALFAIMPGLP 348 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LPFL+ + G W K P+ + + + T SE + Sbjct: 349 ALPFLVIAVGAGIGAWMRHKTPVKDGDGDVTQISPQPTAPPISEMLKLDLLRLEL----- 403 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 G+ L+ L LT++I+ +R+ ++ G + P +RI++N L Y I + I Sbjct: 404 --GFGLLPLTSGEN-PQLTEQIKALRRTVATELGFITPPVRIQDNILLPSDNYVIKLKEI 460 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++ KLMA+ S ++ G + +PA+G+P WI + K KA+ M ++D A Sbjct: 461 EIGSGEVKPGKLMAMSPSGGAPDLPGDRTTEPAFGLPAVWIDPSLKPKAVAMKCTIVDPA 520 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVI TH+++ VR +PDL Y L + L +L DL + + S + +V ++LL Sbjct: 521 SVIVTHLSEAVRQNLPDLLTYVATQTLLDDLPREQQKLVNDLIPSQVPLSTIQRVLQSLL 580 Query: 426 TEGVSLRDIVTIATVLVASSTVT-KDHILLAADVRLALRRSITHPFVRK-QELTVYTLNN 483 E VS+RD+ TI + ++ + L VR+ L R I + V + + TL+ Sbjct: 581 AERVSIRDLPTILESIQEGCSLGLRGVQALTGHVRVRLSRQICNALVGGAGYIPMITLSA 640 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E + ++ + P+MLN+F + +V + A+G+ PV++V + Sbjct: 641 EWEAEFMAHITGQADDRRLAMP-----PSMLNKFVGKLREVFNTVSASGEIPVVVVSTPV 695 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + P + VLS +E+ +K + + Sbjct: 696 RDSMRSIVERVRPSVSVLSQSEIYPRSRIKTVATI 730 >UniRef50_Q01PP7 Flagellar biosynthesis protein FlhA n=2 Tax=Acidobacteria RepID=Q01PP7_SOLUE Length = 699 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 200/574 (34%), Positives = 331/574 (57%), Gaps = 16/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I ++V+ GA RISEV+ARFTLDA+PGKQM+ID DLNAGLI++A+A+ RRK +A Sbjct: 139 FLVLIAIQYVVINHGAVRISEVTARFTLDALPGKQMSIDGDLNAGLIDEAEAKRRRKALA 198 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EA+FYGAMDGAS+F + DA+A ++I AIN+I G IG+ ++ + A + Y ++TIGD Sbjct: 199 TEAEFYGAMDGASRFTQRDAVASILITAINIIAGFLIGVTQHGMDFRRALETYTVLTIGD 258 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IP+L++S + +IVTR S + + Q+L + L A G++ LA +PGMP Sbjct: 259 GLVTVIPALMISISGGLIVTRASSEARLGAEFHKQILGNSQPLLLAAGVLVALAALPGMP 318 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LPFL+ G GWRM K E + + + + S E++ +EP+++ Sbjct: 319 KLPFLVLGFGAGAGGWRMRK------TELAQIAAPPEDTGKPAPAKDSVESLLRVEPLAI 372 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G L+ LV+ AQ +PL +RI +R+ ++ G LLP +R+ +N L+ +Y I + G+ Sbjct: 373 EVGLGLIGLVEGAQESPLLRRISAIRRQLATDLGYLLPPVRVTDNLSLRSREYVISLKGV 432 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++P +A+ + ++G DPA+GM TWI A + +A + GY V+DS Sbjct: 433 EIARYELPQGCELAIATGAASAPLEGQATRDPAFGMNATWIPADRADRARHSGYTVVDSV 492 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SV+ TH+++I+R Y +LF+ D +L +R+ P++ ED + L S + +V + LL Sbjct: 493 SVLGTHLSEIIRRYAHELFSRQDAKRLLDRVGVEHPKVVEDVVPKLLPLSSVQRVLQNLL 552 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNE 484 E VS+RD V+I L + T++ ILL VR A+RR++ P++ R +L + ++ Sbjct: 553 RERVSIRDAVSILEALGEAGASTRNPILLTEYVRQAIRRAVVKPYLNRAGDLPAWFVDPA 612 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E+ + V +Q + L + + ++ ++++ V + R Sbjct: 613 IEHAVEAAVEHGEQNSHIQLAP--------QHIREMLNRISARIQSPETPVVAITSSGAR 664 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + A P L L++NEVP + ++ +G + Sbjct: 665 YFLRQIAEPTMPNLFFLAHNEVPPGVRVQSLGNI 698 >UniRef50_Q04SD6 Endoflagellar biosynthesis protein n=6 Tax=Leptospira RepID=Q04SD6_LEPBJ Length = 705 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 184/570 (32%), Positives = 313/570 (54%), Gaps = 13/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + +V+TKGA RISEV+ARFTLDA+PGKQMAID +L++G IN+ +A+ RRK + Sbjct: 121 FIILVLVQILVITKGATRISEVAARFTLDALPGKQMAIDMELSSGNINEEEAKKRRKRIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E DFYG+MDGASKFV+GD AG++I AINL+GGV IG S A + Y TIGD Sbjct: 181 AEVDFYGSMDGASKFVQGDVRAGLIITAINLLGGVIIGSSIRGESFTQAIETYGKFTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+LL + A IIVTR D+A ++QL ++ VLY G + A +PG+P Sbjct: 241 GLVSQIPALLTTVATGIIVTRSGSESDLATQFKSQLFSNSKVLYVVAGSLGFSAFIPGLP 300 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 +P ++ SA + + G+ + + E+ + + + +PI + Sbjct: 301 FIPLVILSAGIAYLGYSLEQTVK----EQLESIEKKEKESGQDRKPKDFYEELRTDPIEI 356 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LVD +QG L +I +R+ + NGV++P +RI +N L P Y+I ING Sbjct: 357 EVGYHLIPLVDTSQGGALLDQISNLRKKFAQDNGVVIPPVRILDNLDLNPDTYSIKINGT 416 Query: 307 KADEADIPADKLMALPSSETY-GEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + DKLMAL +S I G +P++G WI + K++A GY V+D+ Sbjct: 417 EVGISTVKPDKLMALNTSPGTAESIQGEDFLEPSFGQKAKWISSEDKSEAEAKGYTVVDA 476 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN--YSQLLKVYRA 423 ++V+ TH+ +++ ++ L +++ +L + ++ P L +L A + +V + Sbjct: 477 STVVVTHLKELLATHASTLLGREEVKKLLDHYKTSYPTLIGELDADKPGNLGIIQQVLQN 536 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 LL EG+ +R++V I + + + ++ +L VR ++ R++ ++ +L V TL Sbjct: 537 LLREGLGIRNLVPILESIANNLSKYQNPYILTELVRQSVARTVVKDYLSIDGKLRVITLE 596 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 + + + L + Q + + D + + P+ + ++ ++ + GK P+ +V Sbjct: 597 SRILDRLNKSITQDRIENR---DVLSLAPDFYKKLIDSVAELYRNFRMEGKFPIFVVNRD 653 Query: 543 LRPLLARYARLFAP--GLHVLSYNEVPDEL 570 +R + P VL+Y E+ + Sbjct: 654 VRLPFSYLLAKEFPPRNFGVLAYEEIHSSV 683 >UniRef50_A1T0L5 Type III secretion FHIPEP protein n=5 Tax=Gammaproteobacteria RepID=A1T0L5_PSYIN Length = 695 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 282/575 (49%), Positives = 409/575 (71%), Gaps = 5/575 (0%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ INF+V+TKG ERISEVSARFTLDA+PGKQMAIDADLNAGLINQ QA+TRR++ Sbjct: 122 FIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQETG 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYG+MDGASKFVRGDAIAG++IL INLIGGV IGIF +++SA +FQ + L+TIGD Sbjct: 182 DEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 G+VAQIPSLLL+T+AA+IVTRVS + DI+ ++ Q+L++PSVLY + G+M ++ +VP M Sbjct: 242 GIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNM 301 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 PHLPFL+F+ALLGF GW+ SK ++ EE + + SE+ + W+ + IEPI+ Sbjct: 302 PHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSV--NPLQSPSEEVLDWQVVTDIEPIT 359 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L+LG+KLV+L++ G PL + I+G R+ +S+ G L+PE+ IR+N LKP +Y IFI+G Sbjct: 360 LTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDG 419 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + LMA+ S +++G IDG+ G DPAY MP WI K+ A+N GYQVI Sbjct: 420 EEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISL 479 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 A VIATH+NK++ + + +FNYDDI ++++L P+L+E LSAA+ L++ + LL Sbjct: 480 ADVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLL 539 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNE 484 + V +++ IA ++ S TKD IL+++DVR AL+R+I + L ++ L++E Sbjct: 540 IDQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSE 599 Query: 485 LENLLTNVVNQAQ-QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 L+N+L N + Q Q Q + LD VP+DPN+L Q Q +P + +QM G P+LLV P + Sbjct: 600 LDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTV 659 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 RP++++++R F+ L VLS+NE+ D+ ++ +G L Sbjct: 660 RPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNL 694 >UniRef50_A1JU76 Low calcium response locus protein D n=74 Tax=Proteobacteria RepID=LCRD_YERE8 Length = 704 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 159/588 (27%), Positives = 293/588 (49%), Gaps = 22/588 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKG+ER++EVSARF+LDAMPGKQM+ID D+ AG+I+ +A+ RR + Sbjct: 121 FLIITIVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVNEARERRATIE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G+MDGA KFV+GDAIAG++I+ +N++GGV IG+ + L+A A Q Y ++T+GD Sbjct: 181 KESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAAAEALQLYSILTVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V+Q+P+LL++ A IIVTRVS D+ D+ Q++A P + ++ + ++PG Sbjct: 241 GMVSQVPALLIAITAGIIVTRVSSEDSSDLGSDIGKQVVAQPKAMLIGGVLLLLFGLIPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLE-----TLTRTITETSEQQVSWETIP 239 P + FL+ + L+G G+ +S++ + + L+ T + Sbjct: 301 FPTVTFLILALLVGCGGYMLSRKQSRNDEANQDLQSLLTSGSGAPAARTKAKTSGANKGR 360 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLT-----QRIRGVRQVISDGNGVLLPEIRIRENFRL 294 L E + ++ L+ VD +Q L + VR+ + GV P I +R N + Sbjct: 361 LGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRALYLDLGVPFPGIHLRFNEGM 420 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMP---VTWIQAAQ 351 +Y I + + ++ A L+ S E+ G+ + +P W+ Sbjct: 421 GEGEYLISLQEVPVARGELKAGYLLVRESVSQL-ELLGIPYEKGEHLLPDQETFWVSVEY 479 Query: 352 KAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA 411 + + + + V+ H++ ++R Y D + L ++ L +++ Sbjct: 480 EERLEKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETRYLLEQMEGGYGELIKEVQRI 539 Query: 412 LNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV 471 + ++ ++ + L+ E +S+R++ +I +V KD + L +R +L+R I + + Sbjct: 540 VPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYA 599 Query: 472 RKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 L Y + E+E + + V Q G + L DP + + + + Sbjct: 600 NGNNILPAYLFDQEVEEKIRSAVRQTSAGSYLAL-----DPAVTESLLEQVRKTIGDLSQ 654 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 PVL+V +R + + GL VLSY E+ ++ ++ +G + Sbjct: 655 IQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPLGRV 702 >UniRef50_Q44909 Flagellar biosynthesis protein flhA n=23 Tax=Borrelia RepID=FLHA_BORBU Length = 697 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 171/561 (30%), Positives = 302/561 (53%), Gaps = 10/561 (1%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 TKGA R++EV+ARF LDA+PGKQMAID+ ++G + + +A ++ D+ SE +FYGAMDGA Sbjct: 142 TKGATRVAEVAARFALDALPGKQMAIDSAYSSGNLTEEEATRQKNDLQSEVNFYGAMDGA 201 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV G+ G +I IN++GG+ +GI L+ + A YV +T+GDGLV+Q+PSLL+S Sbjct: 202 SKFVSGNVKVGFLITLINILGGLLVGITLQGLNFNEALNNYVSLTVGDGLVSQLPSLLIS 261 Query: 139 TAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLG 198 T+ +IVTR ++ +Q + + +G + LA +PG P L + S + Sbjct: 262 TSTGLIVTRSISKNSFGGEIFDQFTNHLGIYWIVSGFLLFLAFLPGFPTLILMFLSLSIA 321 Query: 199 FTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDK 258 F + +S E ++K + + ++P++L +GY LV +VD Sbjct: 322 FLAYSLSGIRQKEEIDKK---MKLEEEQASIYSDKDVSPVVPLDPLALEIGYNLVPIVDD 378 Query: 259 AQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKL 318 + + L RI +R+ I+ G+++P+IRI +N RL+P+ Y+ + G++ +I K Sbjct: 379 TKTSELLDRIVKIRREIAFEFGIVVPKIRIVDNMRLEPNAYSFKLRGVEVGRGEIKLGKF 438 Query: 319 MALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVR 378 + + G IDG DP++G+P W+ + A +GY V+D S+IATH+ ++++ Sbjct: 439 LVINVGIDSG-IDGDLVKDPSFGLPSLWVNDDGRETAEKLGYTVVDPPSIIATHMTELIK 497 Query: 379 SYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 + ++ D+ + + E++ + ++ +V + LL E VS+R++VTI Sbjct: 498 RHSYEILTRQDVQNTLDVFKKDYGAIVEEVLKNFSVGEIQRVLQGLLKEQVSIRNLVTIF 557 Query: 439 TVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQ 497 + +++TKD L R ++ R IT ++ EL V TLN E ++ + ++ Sbjct: 558 ETIADFTSITKDIFFLIEKCRQSVGRQITSGYLDLNSELNVITLNPSFEQMIIDSRVESN 617 Query: 498 QGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPG 557 +DPN+ +F + ++ +++A G PV+L RP++ P Sbjct: 618 HD-----LISSIDPNLKTKFIYELFKIVNEVQAEGFYPVVLSSESSRPIIKVITSREIPD 672 Query: 558 LHVLSYNEVPDELELKIMGAL 578 L V+S EVP +++ ++ + Sbjct: 673 LVVMSVLEVPQNIKVNVLKTV 693 >UniRef50_C1F997 Flagellar biosynthesis protein FlhA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F997_ACIC5 Length = 700 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 185/574 (32%), Positives = 320/574 (55%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ I F+VV+ GA R +EV+ARFTLDA+PGKQMAIDAD+NAGLIN+A A+ RR+ +A Sbjct: 132 FIALIAIQFLVVSHGAVRTAEVTARFTLDALPGKQMAIDADMNAGLINEATARQRRQAIA 191 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA++F + D++A ++I IN++ G+ IG ++ ++ A + Y ++T+GD Sbjct: 192 QEAEFYGAMDGAARFNQRDSLATILITTINIVAGLLIGTLQHGVALSQAVKTYTILTVGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV IPSLL+S A I++TR S G + ++ QL + LY A+G++ L +VPG+P Sbjct: 252 GLVTMIPSLLVSVAGGIVLTRASSAGALETELGAQLFRKGTTLYIASGVLGALCLVPGLP 311 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L FL+ + +L G ++K+ + + +++ ++ +SL Sbjct: 312 KLAFLVPAVILAGIGRTVTKEQ------PAEEAAEEAGKKADPSRADNLDSVLKVDDLSL 365 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +G++L+ LVD+AQG + R+R +R+ ++ G L+P + I +N RLKP +Y + + G+ Sbjct: 366 EIGFQLIPLVDEAQGGLMLSRVRTLRRHLAGELGFLVPAVHISDNLRLKPREYVVSLRGL 425 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A++L+A+ + + G + +PA+G WI + +AL GY V+D A Sbjct: 426 EIGRWQTEANQLLAVSNEARPRPMQGKEVREPAFGANARWIAPELEEQALAAGYSVVDPA 485 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 + I+TH+ +++R++ +L + + +L + L+ + P+L E+L ++ ++ KV + LL Sbjct: 486 TAISTHLAELIRTHAHELLSRAETKRLLDTLNESHPKLVEELVPKVMSLGEVQKVLQQLL 545 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E VS+RD+ TI LV + + + VR AL R +T + L V L Sbjct: 546 REQVSIRDLGTILETLVEVAAQGRGLPAMVEAVRRALGRRLTQKLLDSDGSLPVMVLEPA 605 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L ++ P + + ++ ++ + ++ PVLL R Sbjct: 606 LEEALIAATQSEPPTDALLDRRTPASAQLFARISESLKKLSQNHPSSAL-PVLLCQSPAR 664 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R+ P + VL+ E+ E+ + +G L Sbjct: 665 YYLRRWLEPVFPRITVLAPPEIGPEIRVHSIGVL 698 >UniRef50_Q9ZM40 Flagellar biosynthesis protein flhA n=25 Tax=Epsilonproteobacteria RepID=FLHA_HELPJ Length = 733 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 203/602 (33%), Positives = 325/602 (53%), Gaps = 36/602 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ +N +VVT G+ R++EV ARF LDAMPGKQMAIDADLN+GLI+ +A+ RR ++ Sbjct: 134 FSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSGLIDDKEAKKRRAALS 193 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFV+GDAIA ++I IN+IGG +G+F+ ++S + + ++TIGD Sbjct: 194 QEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGD 253 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV QIP+L+++TA I+ TR + + D A + QL L + + A +PG Sbjct: 254 GLVGQIPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGANLLLFATIPG 313 Query: 185 MPHLPFLLFSALLGFTGWRMSK------------------------QPLAAEAEEKSLET 220 +P L F W +S+ +P +++ + + T Sbjct: 314 LPTFSLAFVGTLFLFIAWLISREGKDGLLTKLENYLSQKFGLDLSEKPHSSKIKPHAPTT 373 Query: 221 LTRTITETS-EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGN 279 T+T E E++ + + + IE + L+LGY+L++L D QG L +RIRG+R+ I+ Sbjct: 374 KTKTPEEIKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDY 433 Query: 280 GVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPA 339 G L+P+IRIR+N +L P+ Y I + GI E + DK +A+ + EI+G+ +PA Sbjct: 434 GFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPA 493 Query: 340 YGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSS 399 +GM WI A K +A+ GY +ID ++VIATH +++V+ Y D D++ L RL+ Sbjct: 494 FGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAK 553 Query: 400 TAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTK-DHILLAADV 458 P + E+ S + + V +ALL E + ++D++TI + + + + D +L V Sbjct: 554 DYPTIVEE-SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQV 612 Query: 459 RLALRRSITHPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQF 517 R L R IT+ F L T + + E L N + + ++L+ L + Sbjct: 613 RARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGE-----LQKL 667 Query: 518 QSTMPQVKEQMKAAGKDPVLL-VPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 + + ++ G PV+L V P LR L+ + VLS+ E+ + +G Sbjct: 668 IEGVSEEAMKVLQKGIAPVILIVEPNLRKALSNQMEQARIDVVVLSHAELDPNSNFEALG 727 Query: 577 AL 578 + Sbjct: 728 TI 729 >UniRef50_Q56338 Flagellar biosynthesis protein flhA n=5 Tax=Treponema RepID=FLHA_TREPA Length = 707 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 182/576 (31%), Positives = 298/576 (51%), Gaps = 8/576 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L+ + V+TKGA RI+EV+ARFTLD K M+IDA+ NAG+I + +A+ R++ + Sbjct: 122 FIILIAVQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAGVITEEEARERKRQIQ 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADF+GAMDGASKFV G+ G+ I +N+I G+ +G+ AA Q Y +TIGD Sbjct: 182 READFFGAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL+AQ+PSLLLS A IVTR SD G +V+ Q S V + +G + V+AV+PG P Sbjct: 242 GLLAQLPSLLLSVATGFIVTRSSDQGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFP 301 Query: 187 HLPFLLFSALLGFTGWRMSKQPLA-AEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 H + F G ++ K+ + E + + + +T + I ++P+S Sbjct: 302 HSILFFMAVCFAFVGLQLRKRERVHVQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLS 361 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L LGY L+ LVDK +G L RI +R+ + G++ P+IRI +N RL PS Y I G Sbjct: 362 LELGYGLIPLVDKEKGAELLSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQG 421 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 ++ + +A+ S + E+ G + DP +G+P WI + +A +GY V+ Sbjct: 422 LEVARGKLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPAVWISEENRDRAERVGYTVVAP 481 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 +++IATH+ +++R+ D+ ++ + + L P + +D++ ++ KV + LL Sbjct: 482 SAIIATHLTQVIRTNAADILGRQNVQMIIDALRKEYPAVVDDVTQKCPLGKIQKVLQGLL 541 Query: 426 TEGVSLRDIVTIATVLVASSTVTK--DHILLAADVRLALRRSITHPFVRK-QELTVYTLN 482 E VS+R+ V I L ++ + +L VR L R I + + L V L+ Sbjct: 542 REQVSIRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLD 601 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 + LE L+ + L + + + Q + V + G PVLL Sbjct: 602 SSLETFLSEKIALTVD----SLSILTLSLDEQRQVLQAVRTVFVPTRQEGYIPVLLTTDT 657 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + V+SY EV ++ ++ +G + Sbjct: 658 IRSAMWNLFFSDRIEIAVMSYKEVSTDMRIETVGVV 693 >UniRef50_Q8YDK9 Flagellar biosynthesis protein flhA n=84 Tax=cellular organisms RepID=FLHA_BRUME Length = 723 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 184/573 (32%), Positives = 310/573 (54%), Gaps = 6/573 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ +NF+V+TKGA RI+EV ARFTLDA+PGKQMAIDADL++GLI++ +AQ RR+++ Sbjct: 155 FAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQRRRRELE 214 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+G+MDGASKFVRGDAIAG++I A+N+ GG+ IG ++ + A + +++GD Sbjct: 215 EESSFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGD 274 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L++S AA ++V++ G + QL A P L A ++F+L V+PG+P Sbjct: 275 GLVTQIPALIVSLAAGLLVSKGGTRGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLP 334 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 PF L + F G + ++ A + E + E + +++ S + I L Sbjct: 335 AFPFFLLGGAMAFVGIAVPRRQ-ARQREADAAEAGKKQREAEEQERNSVKASLETNQIEL 393 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Y I I+G Sbjct: 394 CLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGT 452 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 ++ +++ + + G + +PA+GM + A GY +D+ Sbjct: 453 AVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTVDNL 512 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS L V + LL Sbjct: 513 SVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLKLLL 572 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 E +S+R++ I + + + + ++ VR+ + + I L V L N Sbjct: 573 AERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVLNVLRLGNRW 632 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 + + + + +G V D +DP +L QF + + G+ VL+ P+ RP Sbjct: 633 DLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPEARP 689 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + L VLS+ E+ +E+K +GA+ Sbjct: 690 YIRMIIERLFATLPVLSHVEIARGVEVKSLGAI 722 >UniRef50_Q03845 Flagellar biosynthesis protein flhA n=42 Tax=Alphaproteobacteria RepID=FLHA_CAUCR Length = 700 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 191/567 (33%), Positives = 306/567 (53%), Gaps = 10/567 (1%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKG+ RI+EV+ARFTLD+MPGKQMAIDADL+ GLI+Q +A+ RRK++ E+ F+G Sbjct: 142 NFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTGLISQDEAKIRRKELEQESTFFG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGASKFV+GDAIAG++I AIN+IGG+ IG+ ++ + A Y +MTIGDGLV+QIP Sbjct: 202 AMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQIP 261 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 +L++S AA ++V++ G + QL +P L + ++A++PGMP PF Sbjct: 262 ALIISIAAGMVVSKAGVEGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAM 321 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + G ++ + +A + + ++ I+ + + LGY L+ Sbjct: 322 ALAAGALAYKRVQDAKKPKALD---PADLEAAAPSEPEEEPISASLAIDDVKIELGYGLL 378 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 L++ G LT +IR +R+ ++ G ++P +RI +N RL YAI I ++A ++ Sbjct: 379 TLINDLDGRKLTDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEV 438 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 LM + E+ G +PA+G+P TWI + +A GY V+D A+V+ TH+ Sbjct: 439 RLGCLMCMDPRGGQVELPGEHVREPAFGLPATWIADDLREEATFRGYTVVDPATVLTTHL 498 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSLR 432 +I++ + DL +Y ++ +L L T +L +DL + + + +V ++LL E VS+R Sbjct: 499 TEILKENMADLLSYAEVQKLLKELPETQKKLVDDLIPGTVTATTVQRVLQSLLRERVSIR 558 Query: 433 DIVTIATVLVASSTVTKDHILLAADVRLALRRSIT-HPFVRKQELTVYTLNNELENLLTN 491 D+ I + ++ T L VR L R + L + TL+ + E Sbjct: 559 DLPQILEGVGEAAPHTASVTQLVEQVRARLARQLCWANRGDDGALPIITLSADWEQAFAE 618 Query: 492 VVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYA 551 + ++ L P+ L F + E+ AG+ PVLL P +RP + Sbjct: 619 ALIGPGDDKQLALP-----PSRLQDFIRGVRDSFERAALAGEAPVLLTSPGVRPYVRSII 673 Query: 552 RLFAPGLHVLSYNEVPDELELKIMGAL 578 F V+S NE+ LK +G + Sbjct: 674 ERFRGQTVVMSQNEIHPRARLKTVGMV 700 >UniRef50_A5V5S8 Flagellar biosynthesis protein FlhA n=8 Tax=Sphingomonadales RepID=A5V5S8_SPHWW Length = 715 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 219/574 (38%), Positives = 331/574 (57%), Gaps = 9/574 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+ +A+ RR++VA Sbjct: 127 FGILMVINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLTPEEAKARRQEVA 186 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFV+GDA+AG++IL IN+ GG+ +G + LS A Y+++ IGD Sbjct: 187 TEADFYGSMDGASKFVKGDAVAGVLILVINIFGGLILGTLSHGLSLSEAASTYIILAIGD 246 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 LVAQ+P+LLLS AAA IVTRVS D++ + +Q S I+ +L +VPGMP Sbjct: 247 ALVAQVPALLLSIAAAAIVTRVSSPLDLSGQITSQ-FGSARAWAPVAAILGLLGIVPGMP 305 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 H+ L +A+ GF W++SK A +A E + S + W I + L Sbjct: 306 HMIILSAAAVAGFVAWKLSKIKKAEQAIEVAAAEAANAPAPVSPNSIDWNEISDGSALGL 365 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY LV LVD+ +G PL RI G+R+ +S G ++P +R+R+N L P+ Y I + G+ Sbjct: 366 ELGYGLVGLVDERKGAPLMARITGIRRQLSREMGFVIPLVRVRDNLSLPPNAYRITVAGV 425 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 E + ++L+AL S + G ++G + DP++G+ WI ++ A+ GY V+D A Sbjct: 426 IMGEDECFPEQLLALDSGDLEGRVEGRECRDPSFGLEAVWISPDRRGDAIVAGYTVVDPA 485 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ATH+N+++ + DLF D+ +L + L AP+L L L+ +Q+ RALL Sbjct: 486 TVVATHLNQVIAATAADLFGMDEAQRLLDALKEAAPQLVAGLTPQPLSLAQIASACRALL 545 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 EGV L+D IA +V ++ + D + L ++R + I V K L V TL+ Sbjct: 546 AEGVPLKDFRRIAEAMVDAAGQSADGLALVENIRSRIGALIVQTLVPVKMPLPVVTLDAG 605 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE+LL V + P +P + N+ + + + + + ++ P R Sbjct: 606 LESLLAQAVRTSPGASH------PFEPALANRIVAAISEAAMPLVNSATRFAIVTSPIAR 659 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LAR + P V+S+ E+PD +++ + Sbjct: 660 RALARLLKPHLPETPVMSFLEIPDGKAVEVAAVV 693 >UniRef50_Q5HUS5 Flagellar biosynthesis protein FlhA n=22 Tax=Campylobacterales RepID=Q5HUS5_CAMJR Length = 724 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 205/595 (34%), Positives = 332/595 (55%), Gaps = 32/595 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+VVTKG+ R+SEV ARFTLDAMPGKQMAIDADLNAGLI++ A+ RR++V Sbjct: 135 FCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAGLIDEQTARARRQEVI 194 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EA+FYGAMDG+SKF++GDA+AG++I IN+IGG IG F+++++ A Y ++TIGD Sbjct: 195 AEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGD 254 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP L+ STA AII+TR S D + A QLL+ L ++F+ A+VPG+ Sbjct: 255 GLVSQIPGLITSTATAIIITRASKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGL 314 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQV------------ 233 P L + + G+ ++KQ + + +++ + S+ Sbjct: 315 PTLSLGFMALVFLSLGY-LTKQVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSE 373 Query: 234 ---------SWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLP 284 I +E + L LGY L+ L + N LT+RIR +R+ I++ G L+P Sbjct: 374 EEILKEEEHKINDILKVEILELELGYGLIKLAE----NELTERIRSMRRSIAESLGFLMP 429 Query: 285 EIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPV 344 +IRIR+N RLKP++Y+ + G+ A+I DK +A+ S EI+G+ +PA+ Sbjct: 430 KIRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDA 489 Query: 345 TWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRL 404 WI A K +A GY VID ASVI+TH++++++++ +L ++ L +++ + P + Sbjct: 490 LWIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPII 549 Query: 405 AEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRR 464 E S + K+ + LL + ++D++TI + + V+K ++ VR +L R Sbjct: 550 VEGALGVAPVSLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLAR 609 Query: 465 SITHPFVRK-QELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQ 523 IT+ ++ L ++ L++ +L V Q + G + SV +++ ++ + Sbjct: 610 MITNMYLDDKGNLDIFILDSASSAVLMENV-QFRDGSYHLPLSVAQTGTLVDTLRAEVAA 668 Query: 524 VKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 V K +L V PQLR +A F+ + VLS+ E+ + G + Sbjct: 669 VAN---GRIKPFILCVEPQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGII 720 >UniRef50_A8EW37 Flagellar biosynthesis protein FlhA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EW37_ARCB4 Length = 703 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 199/582 (34%), Positives = 318/582 (54%), Gaps = 25/582 (4%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVTKGA R++EV+ARFTLD+MPGKQMAIDADLNAG I+ QAQ RRK + SEA+FYG Sbjct: 128 NFMVVTKGATRVAEVTARFTLDSMPGKQMAIDADLNAGFIDDIQAQARRKALISEANFYG 187 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDG+SKFV+GDAIA ++I +NL+GG+ +G+F++NLS A + Y ++TIGDGLV+QIP Sbjct: 188 AMDGSSKFVKGDAIASIIITLVNLVGGILVGLFQHNLSIAQAGETYTILTIGDGLVSQIP 247 Query: 134 SLLLSTAAAIIVTRV-SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 +LLLSTA AII+TR +D+ A NQL+ L + + A+VPG P + Sbjct: 248 ALLLSTATAIIITRSNTDDEKFATQTVNQLIKDSKSLILVGIGLMLFALVPGFPTFILMT 307 Query: 193 FSALLGFTGW--------------RMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETI 238 L+G G+ R K P + ++ R +++ + ETI Sbjct: 308 MGLLMGGLGYIIIMIERGDNNIVTRFLKTPEVKKVDKPEDLKEKRRTASAADETQTIETI 367 Query: 239 PLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQ 298 +E + L LG +L+ LV + L +I+ +R+ I+ G ++P+IRI ++ L P++ Sbjct: 368 MKLEVLELKLGIRLLQLVQGN--SELLDKIKAIRKTIASELGFVIPQIRISDDSYLSPNE 425 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y +++ I + I DK +A+ ++ G+ +P + + TWI + +AL Sbjct: 426 YQLYLKRIPLVKGRIEVDKFLAMG-GTGNEKLQGIHVKEPVFNLDATWITGDLREEALMK 484 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 G+ V+D+ ++I+TH+++I++ + D+ DI + RL P + E+ +Y LL Sbjct: 485 GFTVVDAPTIISTHISEIIKRHAEDIITRQDIVDIVERLKKDFPIVIEEAMKVTSYGALL 544 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELT 477 KV + LL E + + D++TI + + TK +L VR L R IT F L Sbjct: 545 KVCKDLLHEKIPIIDMLTIIEAIADIAEFTKAPEILLEHVRAKLYRLITQKFKDTDGILH 604 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV- 536 + T+ ++E + + ++ML + N + Q+ + ++ G V Sbjct: 605 IITIKPDVEQQFIGKLQEHHGISQLMLSIAEI-----NNLVTKTKQLLDDVEMKGFSKVC 659 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++V P LR ++ F + VLS+ E+ + I G L Sbjct: 660 MVVDPVLRKRISEIYEKFGLQIAVLSHAELDSKANFAIEGTL 701 >UniRef50_UPI00016C3B57 flagellar biosynthesis protein A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B57 Length = 720 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 195/577 (33%), Positives = 307/577 (53%), Gaps = 15/577 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ I F+V+TKGA R+SEV+ARFTLD++PGKQMAIDA++NAG+I++A+A+ RR + Sbjct: 133 FLILIVIQFVVITKGAGRVSEVAARFTLDSLPGKQMAIDAEMNAGMIDEAEAKRRRTSLM 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E++FYG MDGAS+FVRGDA+A ++I AINL GG IG+ + A ++Y ++TIGD Sbjct: 193 RESEFYGTMDGASRFVRGDAVAAIIITAINLFGGFIIGLT-KGMPLAEAVRRYSILTIGD 251 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L+ +TA+A++VT+ + + ++ Q A+ A I+ LA+VPGMP Sbjct: 252 GLVTQIPALITATASAMLVTKATSGTSLGEELGGQFSAASGPFRLAAFILIALALVPGMP 311 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS--WETIPLIEPI 244 LPFL L RMS+ P A + S+ V + + + Sbjct: 312 MLPFLALGVALLLLSRRMSRVPELPPAAKAEAAAAAAAAAAPSKSPVEGYLDDFLQSDRV 371 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 SL +G L+ +V +G L RI G+R+ ++ +G+ +P +R+R+N +L P Y I + Sbjct: 372 SLEIGAALIPMVSARRGPGLIDRIGGLRRDLAKQSGLWVPAVRVRDNLQLDPPTYRILLG 431 Query: 305 GIKADEADIPADKLMALPSSETY-GEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G + D+ D +A+ + G +PA+G+P WI A + +A G+ V+ Sbjct: 432 GREVARGDVRPDLWLAIDPGGAARVPLTGEDAREPAFGLPAKWISEADRNRAEAAGFTVV 491 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 DS +VI TH+ ++VR + +L DD+ + +R+ T P + +DL ++ L +V Sbjct: 492 DSPNVIITHLGEVVRRHAGELLGRDDLKSMVDRVRETTPAVVDDLIPNVVSMGLLHRVLT 551 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTL 481 LL E V + ++ I L A + KD LA VR+ L R++ F + L Sbjct: 552 QLLDERVPISNLPRILESLAAHAPTVKDPAELAERVRVDLGRAVVDRFRDPTGRIRAIVL 611 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + LE L V Q + +DP+ L Q + + A G + LL Sbjct: 612 DPRLELDLKRAVQNNQ---------LIIDPSRLEQLTMRVAAELRKAGARGYEAALLCDA 662 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LR L L V+SY E+P +L ++ + + Sbjct: 663 GLRRALRHSLARALHDLSVVSYQEIPTDLLMEPVAVI 699 >UniRef50_Q254G8 Type III secretory flagellar biosynthesis n=19 Tax=Bacteria RepID=Q254G8_CHLFF Length = 709 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 168/572 (29%), Positives = 283/572 (49%), Gaps = 15/572 (2%) Query: 17 VVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMD 76 VVTKGAER++EV+ARF LDAMPGKQMAIDADL AG+I+ QA+ +R + E++ YGAMD Sbjct: 140 VVTKGAERVAEVAARFRLDAMPGKQMAIDADLRAGMIDAQQARDKRGMIQKESELYGAMD 199 Query: 77 GASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLL 136 GA KF++GD IAG++I IN++GG+ IG+ + + A Y L++IGDGLV+QIPSLL Sbjct: 200 GAMKFIKGDVIAGIVISLINIVGGLTIGVAMHGMDLAQAAHVYTLLSIGDGLVSQIPSLL 259 Query: 137 LSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFS 194 +S A I+ TRVS + ++ ++ +QL+ P L A+ + G P F + S Sbjct: 260 ISLTAGIVTTRVSSDKNTNLGKEISSQLVKEPRALLLASAATLGVGFFKGFPLWSFSILS 319 Query: 195 ALLGFTGWRM--SKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 + G G + K A + + T+ + + + L P+ L LG L Sbjct: 320 FIFGLLGVILLAKKNSTAKKGASGASTTVGAAADGAATAGDNPDDYSLTLPVILELGKDL 379 Query: 253 VALVD---KAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR-ENFRLKPSQYAIFINGIKA 308 AL+ K+ + + I +RQ + G+ P I +R ++ L+ Y I +N + Sbjct: 380 SALIQHRTKSGQSFIDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGFDYMILLNEVPY 439 Query: 309 DEADIPADKLMALPSSETYGEIDG-VQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 IP ++ E + A G+P W+ K + Sbjct: 440 VRGKIPPHHVLTNEVEENLKRYNLPFITYKNAAGLPSAWVSEDAKTILEKAAIKYWTPLE 499 Query: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTE 427 VI H++ + ++ + + + P L ++++ + +L ++++ L+ E Sbjct: 500 VIILHLSYFFHRSSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQE 559 Query: 428 GVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELE 486 +S++D+ TI L + KD +LL VR +L+ I+ F + Q ++VY L+ E+E Sbjct: 560 QISIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIE 619 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPL 546 ++ + Q G + L DP+ +N +M G+ PVLL +R Sbjct: 620 EMIRGAIKQTSAGSYLAL-----DPDSVNLILKSMRNTITPTPPGGQPPVLLTAIDVRRY 674 Query: 547 LARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + P + V+SY E+ E+ ++ +G + Sbjct: 675 VRKLIETEFPDIAVISYQEILPEIRIQPLGRI 706 >UniRef50_Q3SJM4 Flagellar biosynthesis protein FlhA n=2 Tax=Betaproteobacteria RepID=Q3SJM4_THIDA Length = 692 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 213/570 (37%), Positives = 331/570 (58%), Gaps = 13/570 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INF+V+TKGA RI+EV+ARFTLD+MPGKQ+A+DADLNAG +++++A+ RR ++ Sbjct: 124 FLILVIINFVVITKGAGRIAEVAARFTLDSMPGKQLAVDADLNAGFVDESEARMRRAEIG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKFVRGDAIAGM+IL +NLIGG+ +G+ +++L A +Y L+T+GD Sbjct: 184 READFYGAMDGASKFVRGDAIAGMIILLVNLIGGIAVGLLQHDLGVGEALARYALLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV QIP+L++STAA I+V+R S D++ + Q+ P LY A ++ L V+PG P Sbjct: 244 GLVTQIPALIISTAAGIVVSRASSEQDLSREFSTQIFGRPQTLYVAAAVLAALGVIPGTP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 H+ FL +A+L +++ +A + L + V+W+ IP ++ ++L Sbjct: 304 HVAFLTIAAVLAALALWLTRHRESAAFDSTPLPPIEEEALPV---DVTWDDIPPVDVLAL 360 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY+L+ LVD+ QG RI R+ + G+++P IR+R+N LKP+ + I + G+ Sbjct: 361 EVGYRLIPLVDRNQGGAALTRITESRRRFATDMGLVVPLIRVRDNLDLKPNTFRITLKGV 420 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 ++P +++A+ + + G IDG G DP +P WI AA+ +A G+ V++ A Sbjct: 421 DVAHGEMPTGQILAVDTGDVLGRIDGTPGVDPLMHLPGVWIDAARVEEAELRGFVVLEPA 480 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +IA V + R + P+L ++ QL + L+ + P L ED+ L + + + + L+ Sbjct: 481 ELIARQVEAVFRQHAPELLGRTEVQQLLDALARSHPGLVEDVTPRHLPLTTVQAILQQLI 540 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHP-FVRKQELTVYTLNNE 484 E V +RD T+ L A + T+D L VR AL RSI F L V L Sbjct: 541 AENVPIRDTRTLFETLAARAPKTQDIDDLVETVRAALGRSIVDRLFEGSDTLLVIGLAPT 600 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E+ L +G + + P+ L+ Q + +A G PVLL P LR Sbjct: 601 TESRLL--YEMGDEGEAL------LAPSTLDALNGAAEQAVAEHEAGGHPPVLLTSPGLR 652 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKI 574 +L+R R P L V++Y EVP + +++ Sbjct: 653 AILSRLLRRTLPRLAVIAYAEVPADKTVQV 682 >UniRef50_B4UG32 Flagellar biosynthesis protein FlhA n=3 Tax=Anaeromyxobacter RepID=B4UG32_ANASK Length = 692 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 192/574 (33%), Positives = 317/574 (55%), Gaps = 16/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L LL +NF V+TKG+ R+SEV+ARFTLDA+PGKQMAIDADL AGL++ +A+ RR+ + Sbjct: 125 FLILLIVNFTVITKGSNRVSEVAARFTLDALPGKQMAIDADLAAGLVDDREARGRRQALE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +F+GAMDGASKFVRGDA+AG+ I +N++GG+ G+ + +LS A + Y L+T+GD Sbjct: 185 RETEFFGAMDGASKFVRGDAVAGLAITGVNIVGGLLAGLLRDHLSLSTAAETYTLLTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+Q+P+LL+STAA ++VTR + D+ V +Q+L P VL T G++ L ++PGMP Sbjct: 245 GLVSQMPALLVSTAAGLVVTRAAG-SDLGTQVASQMLGRPVVLRTTAGVLVALGLLPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 + F + L A + + + + ++ + L Sbjct: 304 LVAFGGVAGALLLA--------ARRAAGRQEAAARAPRPAAEEKGPERIQDLLALDALEL 355 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY LV L+D +G L R+ +R+ ++ G++LP + +R++ RL P QY + + G+ Sbjct: 356 GVGYGLVPLIDLDKGGELPGRVTALRRQLATDLGIVLPPVHLRDDLRLDPGQYRVLLRGV 415 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++LMAL + ++GV G DPA+G+ WI A + +A +G ++D+A Sbjct: 416 ELGRGLAHPERLMALDPNGGDPAVEGVPGVDPAFGLRAVWITPADRPRAEALGLTLVDAA 475 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALL 425 SVI TH+++++R ++ ++ +L L AP+L ED + A++ +L++V R LL Sbjct: 476 SVITTHLSELLRRNAHEIVGRQEVQELLGVLGRDAPKLVEDVVPGAISLGELVRVVRGLL 535 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 EGVS+RD+ T+ + ++ +K+ L R L R +T + TL+ Sbjct: 536 REGVSVRDLRTVLEAVADAAPRSKEPAWLVEAARRRLSRQLTARAAGADGVVRALTLDRS 595 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 E L + + + D + +++ ++ AG+ VLL PP LR Sbjct: 596 TEETLRATLGASDGEAALAPDV-----ETARRLVASLESGATRLTGAGQPVVLLAPPDLR 650 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L +A F P + VL+ E+ ++ G + Sbjct: 651 RPLFDFASRFVPDVQVLAARELAPGTTVEPAGTV 684 >UniRef50_P35656 Hypersensitivity response secretion protein hrcV n=91 Tax=Bacteria RepID=HRCV_RALSO Length = 690 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 161/582 (27%), Positives = 278/582 (47%), Gaps = 18/582 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL AG ++ +A+ RR +A Sbjct: 117 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRAGHLSPEEARKRRALLA 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ IGI +N++A A ++ +++IGD Sbjct: 177 MESQLHGGMDGAMKFVKGDAIAGLVITLVNILAGIVIGITYHNMTAGEAANRFAVLSIGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG------DIAHDVRNQLLASPSVLYTATGIMFVLA 180 +V+QIPSLL+S AA +++TRVSD + ++ QL S ++TA+ ++ A Sbjct: 237 AMVSQIPSLLISVAAGVMITRVSDEEQAHKQSSLGMEIVRQLSTSARAMFTASALLMGFA 296 Query: 181 VVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSL-ETLTRTITETSEQQVSWETIP 239 +VPG P F+ + L+ G+ + + + +E L R ++ ++ + Sbjct: 297 LVPGFPSFLFVALATLIFVFGYTLRNRAKEGDGDEGDALPALLREGSKGKAPTIAEQAPS 356 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 P+ + LG +L +D L + R +++ G+ P I I + L+P Y Sbjct: 357 FTVPVGVRLGAELAKGLDVPA---LDTAFQQGRHALAEALGLPFPGIAIWKADALQPDSY 413 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 + ++ I + +P L+ E P + P WI A A+ + Sbjct: 414 EVRVHDIPGEPVAVPDGHLLIPDLPEALRAQAVEAAGLPNHPAP-HWIAPAHVAQDAALS 472 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 VIA HV ++R + + R+++ P L + A+ ++ Sbjct: 473 ATGQRVERVIADHVVHVLRRSAHLFVGLQETQWMLERVTTDYPGLVAEAQKAVPAQRIAD 532 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTV 478 V R LL E V +R++ I LV KD ++L VR L R I H +++ Sbjct: 533 VLRRLLEEQVPIRNMRAILESLVVWGPKEKDTLMLVEYVRGDLGRQIAHQATGGTRQMPA 592 Query: 479 YTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP-VL 537 L+ +E + + G + L DP + + + + + Sbjct: 593 ILLDLSVEQTVRQAIKPTPAGNFLTL-----DPQQVEAIIMRLRGIMQGNPVETPSALAI 647 Query: 538 LVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 + +R + R L+V S+ E+ ++L+ +G L+ Sbjct: 648 VTSMDIRRYVRRMIEPHLQALNVYSFQELGGYVDLRPVGKLV 689 >UniRef50_P0A1I5 Protein mxiA n=161 Tax=Proteobacteria RepID=MXIA_SHIFL Length = 686 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 159/575 (27%), Positives = 284/575 (49%), Gaps = 9/575 (1%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG+ER++EV+ARF+LD MPGKQM+IDADL AG+I+ A A+ RR + Sbjct: 118 FSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDAAGAKERRSILE 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ ++ +S A Y ++TIGD Sbjct: 178 RESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQHGMSLSGALSTYTILTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV+QIP+LL+S +A IVTRV+ + ++ ++ +Q+ +P VL + + + ++PG Sbjct: 238 GLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFGNPFVLIVTSALALAIGMLPGF 297 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P F L + L + E T T + S I ++ IS Sbjct: 298 PFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYTGTFDIDNSHDSSLAMIENLDAIS 357 Query: 246 LS-LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 + L+ +K N + I +R GV LP I R + LK + IN Sbjct: 358 SETVPLILLFAENKINANDMEGLIERIRSQFFIDYGVRLPTILYRTSNELKVDDIVLLIN 417 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVT-WIQAAQKAKALNMGYQVI 363 ++AD +I DK+ + + G+ +Y V W+ + N+ ++ Sbjct: 418 EVRADSFNIYFDKV-CITDENGDIDALGIPVVSTSYNERVISWVDVSYTENLTNIDAKIK 476 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 + +++ + + I ++F + + ++ + P L +++ + ++ +V + Sbjct: 477 SAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLKEVFRHVTIQRISEVLQR 536 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNN 483 LL E +S+R++ I L + KD I L VR +L R I E+ V L+ Sbjct: 537 LLGENISVRNLKLIMESLALWAPREKDVITLVEHVRASLSRYICSKIAVSGEIKVVMLSG 596 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 +E+ + + Q G + +D + ++ T+ +++ A K+ VLLV + Sbjct: 597 YIEDAIRKGIRQTSGGSFLNMDI-----EVSDEVMETLAHALRELRNAKKNFVLLVSVDI 651 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + R + V+SY E+ + + ++ + Sbjct: 652 RRFVKRLIDNRFKSILVISYAEIDEAYTINVLKTI 686 >UniRef50_C5EZ65 Flagellar biosynthesis/regulation protein flba n=4 Tax=Helicobacter RepID=C5EZ65_9HELI Length = 754 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 201/614 (32%), Positives = 321/614 (52%), Gaps = 54/614 (8%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF+VVT G+ R+SEV ARFTLDAMPGKQMAIDADLN GLI Q +A+ RR ++A+EADFYG Sbjct: 142 NFMVVTNGSTRVSEVKARFTLDAMPGKQMAIDADLNTGLIGQEEAKARRDELAAEADFYG 201 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGA+KFV+GDAIAG++I IN+IGG IG+F+ ++S A + ++TIGDGLV+Q+P Sbjct: 202 SMDGANKFVKGDAIAGIIITLINIIGGFLIGVFQKDMSVADAASTFTILTIGDGLVSQLP 261 Query: 134 SLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 +L++STA IIVTR S G + A + +QL+ L I+ + A+VPG+P + Sbjct: 262 ALIVSTATGIIVTRFSKEGENFASGIVDQLINESKTLMIVGCILLLFALVPGLPTISLGF 321 Query: 193 FSALLGFT-----------GWR----MSKQPLAAEAEEKSLETLTRTITETSE---QQVS 234 L W+ + K+ +AEE R S Q + Sbjct: 322 VGLLFLTLALLLNKQKDGEAWKYVESLFKKVRKGKAEEGQAPLPQRQTQRASGGQTPQNA 381 Query: 235 WETIPLIEP-----------------------ISLSLGYKLVALVDKAQGNPLTQRIRGV 271 + P +P + + LGY+L+ D AQG L +IR + Sbjct: 382 QQAAPKPQPQESEEERRKREEAEIDKALKVKILRVGLGYQLIKFADPAQGGELVNKIRAI 441 Query: 272 RQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEID 331 R+ ++ G+L+P + +R++ L P +Y I + I+ + I DK +A+ SS GE+ Sbjct: 442 RKTMATEYGILVPMVHLRDDLNLAPDEYQILLKEIEIGKGKIMVDKYLAIASSGFVGELP 501 Query: 332 -GVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDI 390 G+ +P +G+ WI +K A+ GY +ID A+VI+TH+ ++++ Y +L ++ Sbjct: 502 DGIPTKEPVFGLDAYWIDEDKKEDAIIEGYTIIDGATVISTHIQELIKQYAEELLTRQEV 561 Query: 391 TQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTK- 449 L +L P LAE++ + + + + LL E + ++D+++IA + K Sbjct: 562 ANLVAKLGQDYPILAEEIKG-VGIGTIQHILKELLHEQIPIKDMLSIAEAIADGYPAYKA 620 Query: 450 DHILLAADVRLALRRSITHPF-VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVP 508 D L+ VR L+R ITH F L + L+ LE L + Q+ G+ + Sbjct: 621 DLPTLSEYVRACLKRLITHNFQSDDGVLKYFVLSPSLEQFLLEKLPDQQKIGQ----RLR 676 Query: 509 VDPNMLNQFQSTMPQVKEQMKAAGKDPVLL--VPPQLRPLLARYARLFAP--GLHVLSYN 564 + P + ++ + G P ++ VP LR LA + + + VLS Sbjct: 677 LSPTESQSLLDAINVAYQKGVSMGAVPTIIGGVPMVLRKPLAIFLEQYGFGRNIVVLSTA 736 Query: 565 EVPDELELKIMGAL 578 E+ + + +I+G++ Sbjct: 737 EIDYQSKFEILGSI 750 >UniRef50_Q2SEX4 Flagellar biosynthesis pathway, component FlhA n=4 Tax=cellular organisms RepID=Q2SEX4_HAHCH Length = 697 Score = 559 bits (1442), Expect = e-158, Method: Composition-based stats. Identities = 197/574 (34%), Positives = 322/574 (56%), Gaps = 16/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ + ++VVT GA+R++EV+ARFTLD+MPGKQM+IDAD+N GLI++ +A+ RR+++ Sbjct: 120 FLILIVVQYVVVTNGAQRVAEVAARFTLDSMPGKQMSIDADMNMGLIDEKEARERRQNIE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA FYGAMDGASKFV+GDAIAG++I+ I++IGG+ +GI + LS A Y L+T+GD Sbjct: 180 REASFYGAMDGASKFVKGDAIAGILIILIDIIGGLTVGIAQRGLSWGEALHSYTLLTVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIP+L++STA II+TR + + + ++ Q+ P L T + L ++PG+P Sbjct: 240 GIVTQIPALVISTATGIIITRAATDAFLGDEISRQVTRYPKSLVIVTLGLLSLLLLPGIP 299 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 LP + ++L+ KQ EAE+ + E +EP+ + Sbjct: 300 ALPIFIVASLMAALVVYAFKQNKYQEAEDNVEDQEDAEKDIYEE--------LKVEPLEI 351 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 SLG + + ++G L I+ +R+ ++ G +LP ++I + R +Y + ++G Sbjct: 352 SLGPSIAGYLGASEGA-LMDEIKRLRKQLALELGFVLPNVKIYQTDRNSEREYKVCVHGA 410 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + E ++ +D+++A+ + + ++ GV DP YG+P WI+ K KA ++D Sbjct: 411 QVAEGELYSDRILAISAQDLTDKLPGVSVKDPTYGLPAVWIEENLKEKARQFNCTLVDPL 470 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 +V+ THVN+ VR P L + +L R+ + L E+L L S + KV + LL Sbjct: 471 TVMLTHVNETVRLQAPALLTRSETEKLMGRVRTAQSSLYEELVPNTLTLSDIQKVLQQLL 530 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTVYTLNNE 484 E VS+R+I IA LV + V+KDH LA VR L I + + L V +++ Sbjct: 531 QEKVSIRNIELIAEALVDAGKVSKDHEQLADQVRQKLGAEICQDLVAQDRYLHVMSMDPG 590 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 +E L+ + + +QG + VDP + Q S++ + E+M A G PVL+ P +R Sbjct: 591 IEQLMQSGIRVTEQGASL-----YVDPKLTEQVLSSLARQVEKMMAVGLKPVLITSPGVR 645 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + + P L VL+ EVP + +K + Sbjct: 646 RHIRKLSGRLLPHLTVLALTEVPVGMNIKSFSIV 679 >UniRef50_P55726 Probable translocation protein y4yR n=4 Tax=Rhizobiales RepID=Y4YR_RHISN Length = 697 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 162/575 (28%), Positives = 281/575 (48%), Gaps = 23/575 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EV+ARFTLDA+PGKQMAIDA+L G I+ +++ RR + Sbjct: 121 FLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAG++++ IN++GG+ IG+ +S Y L+TIGD Sbjct: 181 KESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 L++QIP+LLLS AA +VTRV + ++ D+ NQL AS L A ++ + VPG Sbjct: 241 ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P F + +A+ + +A++ T+T ++T PI Sbjct: 301 FPLPVFFMLAAVFAA---ASFVKGDVLDADKVDATTVTPAESQTP------NVAAQPNPI 351 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 + L L +D+ + L Q I + Q++S G+++P I + + +L SQ+ I + Sbjct: 352 GVFLAPSLTNAIDQVE---LRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRIDVE 408 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 G+ ++ I ++L E G+ +DP W++ + + G + Sbjct: 409 GVPVEQDLINP-AQLSLADDLKKIESSGIPFRHDPETHR--IWVEQSHEPALKAAGIRHH 465 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 + ++A V+ + + P L + QL R+ L +++ ++ V R Sbjct: 466 SPSELLAMRVHATLTCHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRR 525 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNN 483 LL EG+ +R+ + L S ++ LL VR ++R I H + R L + + Sbjct: 526 LLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVRSGMKRQICHRYGRHGVLPAFVMER 585 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E+++ V + G + L+ S M QV P++L + Sbjct: 586 ETEDVVRCAVRETAAGPYLALED-----RQSEALLSQMRQVFSSTAPGQTRPIVLTSMDV 640 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + + L VLSY ++ + +++ +G++ Sbjct: 641 RRFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSI 675 >UniRef50_B4EYD9 Type III secretion system protein n=5 Tax=Proteus RepID=B4EYD9_PROMH Length = 699 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 167/588 (28%), Positives = 297/588 (50%), Gaps = 22/588 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + F+V+TKG+ER++EV+ARF+LD MPGKQM+IDADL +G+I + Q RRK++ Sbjct: 118 FSIVTIVQFLVITKGSERVAEVAARFSLDGMPGKQMSIDADLKSGIITNEEVQIRRKELG 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ +NLIGG+ +G+ + LS A Y L+TIGD Sbjct: 178 QESQLYGSFDGAMKFIKGDAIAGIVIIFVNLIGGISVGMAQMGLSITEALHTYTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLVAQIP+LL+S +A IVTRV ++ + + N+LLA L + F + +PG Sbjct: 238 GLVAQIPALLISISAGFIVTRVGGENNNLGYSIMNELLAQDFALLVTAILAFGIGFLPGF 297 Query: 186 PHLPFLLFSALLGF----TGWRMSKQPLAAEAEEKSLETLTRTITE-------TSEQQVS 234 P FL+ S +LG W+ SK+ E E+ + + + + Sbjct: 298 PTPVFLILSVMLGVYFFKIKWKSSKKEYKTEDEKDNHNATNADSKKGLMSNLFSGKHGEE 357 Query: 235 WETIPLIEPISLSLGYKLVALVD-KAQGNPLTQRI---RGVRQVISDGNGVLLPEIRIRE 290 + L E I+LS L ++ + P +I + +++ G+LLP+I I Sbjct: 358 VDNSLLTENITLSQAETLPLIITLSTKKKPYLTKIVFEKWLQKEFILQYGILLPDIVIHY 417 Query: 291 NFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAA 350 + ++ + I IN +KA E + P ++ + + WI+ Sbjct: 418 SDKIDDDKIIILINEVKAKELNCPFPLFHIENPNDELLSLGFNLISIEDDNKTHYWIERD 477 Query: 351 QKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSA 410 ++K +GY+ S S + ++ I + + + ++L +AP L ++ Sbjct: 478 DESKLAPLGYKAERSESYFYRKFSDLITLNITEFLGIQETKDILDKLEKSAPELLKECYR 537 Query: 411 ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF 470 ++ ++ V + L+ E + +R+I TI LV + KD +LL +R L R I++ F Sbjct: 538 QVSIQRINDVLQRLVQEKIPIRNIKTIIGGLVQWGSKEKDPVLLTEHIRTLLARYISYFF 597 Query: 471 VRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKA 530 + L+N++E ++ + + Q+ G + L +P L+ + V + +K Sbjct: 598 STDGKFNAIILSNDMEEIIRSGIRQSSSGTLLNL-----EPAELDMIIEKISMVIDDIKY 652 Query: 531 AGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +D + L +R + + P + VLSY+E+ ++E+ ++ ++ Sbjct: 653 I-QDYIFLTSIDIRRFVKKLIETQYPQIPVLSYDEITSDIEINVLQSI 699 >UniRef50_C0QXX5 Flagellar biosynthesis protein A n=2 Tax=Brachyspira RepID=C0QXX5_BRAHW Length = 703 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 159/573 (27%), Positives = 281/573 (49%), Gaps = 13/573 (2%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 F+V+TKGA R+SEV+ARF LD+MP K MA++++L AG I +A+ +RK + E+DFYG Sbjct: 135 QFVVITKGATRVSEVAARFALDSMPSKMMAVESELQAGAITDKEAEEKRKKIRGESDFYG 194 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 MDGASKFV+GD IAG++I IN++GG+ IG+ A Y T+GDGLV+QIP Sbjct: 195 TMDGASKFVQGDVIAGIIITVINIVGGLVIGMTMRGEPFTQAVNAYTRFTVGDGLVSQIP 254 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 S +S A ++VTR S +++ + Q+ A P L+ G F L ++PG P + + Sbjct: 255 SFFMSFATGLLVTRSSSEDNLSTQIAVQVFAKPKNLFIGAGFAFFLMLLPGFPKIALFII 314 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + L G+ + K+ E T T + + + +E I LS+G L+ Sbjct: 315 ALALFLAGYALKKEQQELGLNEDG--TKTDAGEQVHQGPLDVTPFLKVEKIELSVGASLI 372 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 L +++G L RI +R+ ++ G+++P +RI +N ++P +Y + ING + + + Sbjct: 373 PLALESEGGDLINRISQIRRELALEVGLVVPPVRIVDNSVIEPDEYTVSINGTEMAKGFV 432 Query: 314 PADKLMALPSSETYGEID-GVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 + L+AL ++ G + +PA+G+P WI+ +K A G+ + SVIATH Sbjct: 433 RPNMLLALNANSPDGPSPDCEKVREPAFGLPAYWIKVDEKDMAEKKGFMLFQPTSVIATH 492 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-----LNYSQLLKVYRALLTE 427 ++ ++ L +++ + + + L ++ AA + KV + LL E Sbjct: 493 FSETIKRNANLLIGREEVQNMLDLIKDDHKALVSEVLAAKPHNESPLGYIQKVLQNLLQE 552 Query: 428 GVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELE 486 V +R+ V I + + + VR L I+ + + V TL+ +L+ Sbjct: 553 EVPIRNSVAILEGVADAIAIMGS-EQATELVRSRLASQISQMVADQDRNIRVITLSQQLQ 611 Query: 487 NLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGK-DPVLLVPPQLRP 545 N + + G + + + + + + +G D V L P +R Sbjct: 612 NNIAQNLANT--GNLQGSQMIAMSFESMQNLIKNIKDAVKLVSDSGVDDIVFLTSPIIRR 669 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L ++ V++ E+ ++ + ++ Sbjct: 670 PLYQFIAKNVGKYKVIATTEIAQGYNVQGIASI 702 >UniRef50_B5YIY8 Flagellar biosynthesis protein FlhA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY8_THEYD Length = 683 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 217/574 (37%), Positives = 342/574 (59%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ INFIV+TKGA RI+EVSARFTLDAMPGKQM+IDADLNAGLI++ +A+ RR++++ Sbjct: 119 FLILVIINFIVITKGAGRIAEVSARFTLDAMPGKQMSIDADLNAGLIDEKEARRRREEIS 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EADFYGAMDGASKF+RGDAIA ++I+ IN+IGG+ IG+ + + A Q YV++TIGD Sbjct: 179 READFYGAMDGASKFIRGDAIAAIIIMIINIIGGILIGVLQKGMPIGDAVQTYVILTIGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GL AQ+P+L+ STAA I+V+R + ++ D+ QL +P L TA+G++ +L ++PG+P Sbjct: 239 GLAAQVPALITSTAAGIVVSRAATESNLGQDILQQLFKNPKTLATASGVLLLLGLIPGLP 298 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 HLPF++ + + G + M + EK + + E++ ++PISL Sbjct: 299 HLPFIIIAVVSGAIAYLMISKEKK----EKEALPPPPVEEKPVSMEAQLESLLRVDPISL 354 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 +GY L+ LV+ + L +RIR +R+ I+ G ++P I I++N LKPSQY+I I G+ Sbjct: 355 EIGYNLIPLVEGE--SSLVERIRSLRKQIAMEMGYIVPSIHIKDNLMLKPSQYSILIKGV 412 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + ++I + +A+ + +IDG+ DPA+G+ WI+ +KA +G+ V+D++ Sbjct: 413 EIATSEIILGRFLAIGARPG-QDIDGIPTKDPAFGVDALWIEEKDVSKAQMLGFTVVDAS 471 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SVI TH+ +++++Y +L + +L + L+ T PR+ +DL L SQ+ KV + LL Sbjct: 472 SVIVTHLREVLKNYGYELLGKQETQRLLDNLAKTHPRVVDDLIPNLLTLSQVQKVLQNLL 531 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E VS++D+ TI L + VTKD +L VR AL R IT ++ Sbjct: 532 RERVSIKDLQTILETLSEYANVTKDPDILTEHVRQALSRRITKSVQNPDGSISAILFEPS 591 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE + QG + DP ++ + + ++ ++ G PVL+ +R Sbjct: 592 LERTFIESLQTTPQG-----INFATDPLLMEKTIENVKKMADEATVKGYQPVLICSQSIR 646 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + R AP L VLS E+ +++ + G + Sbjct: 647 RFIKRAIERIAPSLPVLSPQEIAPGVKILMFGTV 680 >UniRef50_D2UDE8 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDE8_XANAL Length = 703 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 178/591 (30%), Positives = 285/591 (48%), Gaps = 29/591 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKGAER++EV+ARF+LDAMPGKQM+IDAD AG+I+ + RR + Sbjct: 123 FSIVTIVQFIVITKGAERVAEVAARFSLDAMPGKQMSIDADFRAGVIDGDGVRARRSALE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YG+ DGA KF++GDAIAG++I+ IN+IGG+ IG+ K +LS + Y ++++GD Sbjct: 183 RESQLYGSFDGAMKFIKGDAIAGILIIFINMIGGIVIGMIKNHLSFSESMSTYSILSVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 LV QIP+LL+S A +VTR+S ++ HD+ ++LL+S VL ++G+ ++ ++PG Sbjct: 243 ALVGQIPALLISMGAGFLVTRISGSEQNLGHDIVSELLSSSPVLLISSGLSALIGLLPGF 302 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLET--------LTRTITETSEQQVSWET 237 P FL SA LGF W + +A AE + T ++ Q +T Sbjct: 303 PLPVFLTVSASLGFFCWSRWRAERSASAEGRHANAGRPALQALGAGTAQADADVQADTDT 362 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIR---------I 288 L P+ + L + + N + + D G+LLP I + Sbjct: 363 AFLGHPLVVILPHACAHTPSLSPQNLA----TSLHARVFDEVGLLLPTIVVGFAAADAIV 418 Query: 289 RENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEI-DGVQGNDPAYGMPVTWI 347 + + I IN + A I D + + S+ + V G P W+ Sbjct: 419 SDAQDDARQRVVIRINDVDAAVLYIAFDGVRLVGDSDLLLGLGMHVSRLIDCDGEPAEWV 478 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 AQ A+ ++G + + ++ + F + L + L S P L ++ Sbjct: 479 M-AQPAQLQDIGIAFRSALDELHDQFITVILRNCSEFFGIQETKNLLDMLDSRYPELLKE 537 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + + +L ++ R LLTE V++R++ I L T KD I+L VR+AL R I+ Sbjct: 538 VYRQIPVQKLCEILRRLLTERVAIRNMKLILETLANWGTREKDSIVLTEHVRIALGRYIS 597 Query: 468 HPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQ 527 H R + V L E E + + G + L P + N+ + Q Sbjct: 598 HRIARNGHMKVIVLTPEFEEKVRQGIKHTSTGTFLNL-----TPTVANELVDRITVALNQ 652 Query: 528 MKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + A +D VLL +R PGL V+S+ EV D +EL ++G + Sbjct: 653 LHAVRRDFVLLASMDVRRYARTLIESRFPGLQVISFGEVSDNVELDVIGNI 703 >UniRef50_O85633 EscV protein n=33 Tax=Enterobacteriaceae RepID=O85633_ECOLX Length = 675 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 161/577 (27%), Positives = 278/577 (48%), Gaps = 31/577 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + F+V+TKGAER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ R V Sbjct: 120 FTIITIVQFMVITKGAERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDPLEAKVLRSRVQ 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYG+MDGA KFV+GDAIAG++I+ +NL GGV IG++++++ AA + ++++GD Sbjct: 180 KESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFGGVLIGMWQFDMPFSAALSLFSVLSVGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD----NGDIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 LVAQIP+L++S A ++VTRV ++A D+ Q+ + + +M V+A++ Sbjct: 240 ALVAQIPALIISVTAGVVVTRVPGESEKEENLAGDIVQQVSVNSRPFLISAALMLVMAII 299 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PG P L FL + L W++ K+ K ++ S P E Sbjct: 300 PGFPALVFLFLAVCLLGIAWKLQKKRTFGTGNNKDAMG--------ADLSNSQNISPGAE 351 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 P+ L+L + + + +TQ+I +R + +G+ LP+I + S Sbjct: 352 PLILNLSSNIYS-------SDITQQIEVMRWNFFEESGIPLPKIIVNPVKN-NDSAIEFL 403 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 + + + D + + + VQ + + Q+ L Sbjct: 404 LYQESIYKDTLIDDTV-YFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQLAHLTGMDVY 462 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + I + K+V S + + L + + L ++L L S+++ + + Sbjct: 463 ATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQLGLSKIVDILQ 522 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 L+ E VS+RD+ TI L+ ST KD ++L VR+ALRR I + L V+ + Sbjct: 523 RLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSVSGTLLNVWLI 582 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 +++EN L + Q G + + P Q + + V+L Sbjct: 583 GSDIENELRESIRQTSSGSYLN-----ISPERTEQIIGFLKNIMNPTGNG----VILTAL 633 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + P + VLS+ EV + +ELK++G + Sbjct: 634 DIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTV 670 >UniRef50_Q057S2 Type III protein export, membrane component n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057S2_BUCCC Length = 699 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 195/569 (34%), Positives = 308/569 (54%), Gaps = 18/569 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NF V++ G+ RI+EV ARF LDAMPGKQMAIDADLN+GLI++ QA+ RR ++ EA+FYG Sbjct: 143 NFSVISNGSSRIAEVGARFILDAMPGKQMAIDADLNSGLISEKQAKKRRLEIHKEAEFYG 202 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 +MDGASKF+RGDAIAG++I+ +N+IGG+ IGI +Y +S A + Y ++TIGDGLV+QIP Sbjct: 203 SMDGASKFIRGDAIAGIIIMIVNVIGGLLIGIVQYKMSLLKAIKIYSILTIGDGLVSQIP 262 Query: 134 SLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLL 192 SL++S A+ II+TR + + +I + Q+ + V++ ++ I ++PGMP+ FL Sbjct: 263 SLIISIASGIILTRSNSDKINIGEKIIYQVFNNSKVIFFSSIIFCFFGLIPGMPNFIFLF 322 Query: 193 FSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKL 252 FS L W ++ + + K L+ R +SW I + + + L Sbjct: 323 FSVLFFILSWYINYRKNINKNFSKILKFKKRKKI-----DISWNDIEFEDLLRIELSSIF 377 Query: 253 VALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEAD 312 L + + N L ++++ +R+ I+ G LLPEI I N +L QY IFI G++ Sbjct: 378 FKLCYQKEYNNLIKKLQFLRKNIAQDYGFLLPEINIIHNSKLDRGQYKIFIKGVELFSGF 437 Query: 313 IPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATH 372 I DKL+ + I G++ D + PV WI K LN +DS +I + Sbjct: 438 IFFDKLLIINKERDLINISGIKITDSFFSFPVFWINPVIKDTLLNKKIVFLDSNVLIIKN 497 Query: 373 VNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALLTEGVSL 431 NKI+R+ + +LF + + QL +R+S P+L + L ++ + + LL + +S+ Sbjct: 498 FNKIIRNNLYNLFGFQETQQLLDRISQHYPKLIDYLIPNLMSIITFQNILQNLLKDDISI 557 Query: 432 RDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLL 489 +DI TI L+ S+ K + L +R+AL+ IT F K + + V L+ EN+L Sbjct: 558 KDIRTIVETLIKYSSQFKNNIEELTNIIRIALKEFITQKFFFKNKYINVIGLSTNFENIL 617 Query: 490 TNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 V + ++P + K VLLV P++R LL+ Sbjct: 618 LKFVGNNKN---------QIEPIFSEKLIEKTKSAIILQKKNNLPVVLLVNPKIRVLLSN 668 Query: 550 YARLFAPGLHVLSYNEVPDELELKIMGAL 578 + L VLS++E+ + +KI + Sbjct: 669 FFLNCNIILPVLSFSEISENRVIKITQFI 697 >UniRef50_C4PL76 RhcV protein n=1 Tax=Bradyrhizobium elkanii RepID=C4PL76_BRAEL Length = 707 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 169/576 (29%), Positives = 274/576 (47%), Gaps = 15/576 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+ KGAER++EVSARFTLDA+PGKQMAIDA+L I+Q +A+ RR + Sbjct: 121 FLIVTMVQFMVLAKGAERVAEVSARFTLDALPGKQMAIDAELRNNHIDQHEARRRRAALE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++++ IN++GG+ IG+ ++S DAA Y L+TIGD Sbjct: 181 QESQLHGAMDGAMKFVKGDAIAGLIVICINMLGGISIGLLSKDMSLDAAMHHYTLLTIGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 L++QIP+LLLS AA IVTRV+ + D+ +QL AS L A ++ ++ VPG Sbjct: 241 ALISQIPALLLSITAATIVTRVNGPSKLKLGADIVSQLTASTQALRLAACVLLLMGFVPG 300 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P PF++ + L + A + Q PI Sbjct: 301 FPLPPFVILAVLFAAASYVKVGAKGDEPAAKTGANVTASAPAPAQAQAQKQAAHAEALPI 360 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 +L L L +DK + L Q I V +S G+ +P I R + L SQ+ I ++ Sbjct: 361 ALFLAPNLTHSIDKDE---LEQSIARVSTSVSADLGITVPRIPARIDQNLSKSQFRIDVD 417 Query: 305 GIKADEADIPADKLMALPSSETYGEIDGVQ-GNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + + I + + L E+ G+ DP WI+ A G Sbjct: 418 SVPVERDVINPTQ-LVLNDDIANIELSGIPFRQDPETAR--VWIEERHAAALKAAGIGHH 474 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 ++A ++ + Y L + QL R+ L +++ ++ +V R Sbjct: 475 RPVEILALRLHSTLTRYAQRLVGIQETRQLLARMEQEYADLVKEVLRTATIPRIAEVLRR 534 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLN 482 LL EG+ +R+ + L S ++ +LL VR AL+R I + + + + + Sbjct: 535 LLDEGIPIRNTRLLLEALAEWSEREQNAVLLTEYVRAALKRQICFRYANAHRVVAAFIIE 594 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E E ++ V + G ++LD + S Q+ + + PV+L Sbjct: 595 RETEEIVRVSVRETAVGPYLVLDDWQ-----SEKLLSQFRQIHSTIAQSQSQPVILGSMD 649 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R + + L VLSY ++ E ++ +G++ Sbjct: 650 IRRFVRGFLTRNGLDLPVLSYQDLASEFTVQPIGSV 685 >UniRef50_P35654 Harpin secretion protein hrpI n=54 Tax=Gammaproteobacteria RepID=HRPI_ERWAM Length = 715 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 181/586 (30%), Positives = 283/586 (48%), Gaps = 28/586 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L +NF+V+TKG+ER++EV+ARFTLDAMPGKQM+ID+DL AGLI QA+ RR+++A Sbjct: 124 FLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRENLA 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I+ IN+IGG IG+ + + A AA Y ++TIGD Sbjct: 184 KESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLTIGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-----DIAHDVRNQLLASPSVLYTATGIMFVLAV 181 GL+AQIP+LL+S A +I+TRVS +G +I ++ QL + P + M A+ Sbjct: 244 GLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFAL 303 Query: 182 VPGMPHLPFLLFSALLGFTG----WRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWET 237 +PGMP F++ SA+ +G WR+ +Q +A+E + + + + ++ Sbjct: 304 LPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQ-------QLAPEDNGYQD 356 Query: 238 IPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPS 297 + P L ++ L Q IR +R + G LP I + L Sbjct: 357 LRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAAD 416 Query: 298 QYAIFINGIKADEADIPADKLMA----LPSSETYGEIDGVQGNDPAYGMPVTWIQ-AAQK 352 ++ + I A ++L + GE DG A W Q Sbjct: 417 EFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQH 476 Query: 353 AKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL 412 + ++ +I + + + + + N L S P LA++L + Sbjct: 477 PLLQQEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIM 536 Query: 413 NYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR 472 S+ V + L +E + LR + TIA L+ +D L VR+AL+ I H + + Sbjct: 537 PLSRFAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQ 596 Query: 473 KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 L V+ L E E LL + + QAQ L N+LNQ +S P Sbjct: 597 PNGLNVWLLTPETEELLRDSLRQAQSETFFSLAQ-EYGINLLNQMRSAFP------PYDN 649 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++LV LR L + + VLS+ E+ + + ++G L Sbjct: 650 HHALILVAQDLRSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRL 695 >UniRef50_Q2NR60 Type III secretion apparatus InvA n=4 Tax=Enterobacteriaceae RepID=Q2NR60_SODGM Length = 665 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 150/573 (26%), Positives = 266/573 (46%), Gaps = 26/573 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG+ER++EV+ARF LD MPGKQM+IDADL G+I+ A+ RR + Sbjct: 118 FAIVTVVQFIVITKGSERVAEVAARFCLDGMPGKQMSIDADLRGGVIDAEGARQRRSVLE 177 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGA DGA KF++GDAIA +++ +N IGG+ +G+ ++++ A + L+TIGD Sbjct: 178 RESQLYGAFDGAMKFIKGDAIASIIVAFVNFIGGIAVGMNQHHMDLSQALSTFTLLTIGD 237 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-DIAHDVRNQLLASPSVLYTATGIMFVLAVVPGM 185 GLV QIP+LL+S +A +IVTRV+ +G ++ ++ QLL +P VL + + ++PG Sbjct: 238 GLVGQIPALLISISAGLIVTRVNGDGDNLGRNIMQQLLGNPFVLLVTAVLALSIGMLPGF 297 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 P F++ + LG +Q +++ E + +I +S Sbjct: 298 PLPVFVMLAMALGTLLLMRQRQTRVV------PLPAAADYAGGYPERIMPEALAVILQVS 351 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 + +L + L +R +R GV LP + + + +N Sbjct: 352 RANYARL-------EKEQLCER---LRGQFLIDFGVALPPLMLCPCEHTDDRTVVVVLNE 401 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 I+AD + D L + + D + W + + L G + + Sbjct: 402 IRADVFTLHFDMLRRVIPGDRPCPPDVTLHQE----QEAVWAALDDRERLLATGCVLRPA 457 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALL 425 + ++ ++ + F + L +++ S AP L +++ ++ ++ + LL Sbjct: 458 VDELYHCFAVMLTHHVNEFFGVQETKHLLDQMESHAPDLLKEVLRHATVQRIAELLQRLL 517 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNEL 485 E +S+R + I + + KD L VR AL R I H F L V L++E+ Sbjct: 518 MERISIRHLKLIMEAMALWAPREKDVSALVEHVRCALARYICHQFAADNLLRVIMLSSEV 577 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L + ++ G + L P + + E + A +D VLL +R Sbjct: 578 EETLRDSLHTTSAGTFLNLG-----PQVSEELMELFTSALESLPIAQRDIVLLAAADIRR 632 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + + L VLS+ E+ + + + ++ + Sbjct: 633 FIKSLIQHRFRDLEVLSFGELTESVTVNVIKTI 665 >UniRef50_A9L223 Type III secretion protein, HrcV family n=27 Tax=Proteobacteria RepID=A9L223_SHEB9 Length = 685 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 163/569 (28%), Positives = 280/569 (49%), Gaps = 25/569 (4%) Query: 13 INFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFY 72 + FIV+TKG+ER++EVSARF+LD MPGKQM+ID D+ AG+I+ +A+ +R V E+ Y Sbjct: 126 VQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY 185 Query: 73 GAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQI 132 GAMDGA KFV+GDAIA ++++ N+IGG+ +G+ ++N+SA A Y ++++GDGL+AQI Sbjct: 186 GAMDGAMKFVKGDAIASIIVILTNIIGGIAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI 245 Query: 133 PSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPF 190 PSLL+S A +IVTRV ++A+++ Q+ P+ L A +MF+ A++PG P L F Sbjct: 246 PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF 305 Query: 191 LLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGY 250 +++ + +Q A A E T S+ P P+ L LG Sbjct: 306 GTLGSVVLGASLWLKRQQKRASA---QGEESHFTDAGKSDTANVDNMAPGAVPLILYLGA 362 Query: 251 KLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADE 310 + + + ++ +R + GV LPEI+++ + + + + Sbjct: 363 DVPIH-------GVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGSLGCCDVLLYQESVLQ 415 Query: 311 ADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIA 370 + + + + S I + P + WI+ +A G V + A Sbjct: 416 LQLVPQEALLIDS---IATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPA 472 Query: 371 THVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVS 430 + K++ Y + + L + + + L ++L L+ ++ ++ + L+ EG+S Sbjct: 473 YVMGKVIDRYAGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGIS 532 Query: 431 LRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNELENLL 489 +RD+ TI LV KD I+L VR+ALRR I F + + V + +EN++ Sbjct: 533 VRDLRTIFETLVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVI 592 Query: 490 TNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 + Q+ G LD + ++ + VLL +R L + Sbjct: 593 RESIRQSTAGSYSALDMAQT---------QQILTCIQEQLPPEQTCVLLTSLDVRRYLRK 643 Query: 550 YARLFAPGLHVLSYNEVPDELELKIMGAL 578 VLS+ E+ D+ E+K++G + Sbjct: 644 IVERELFSTPVLSFQELGDDAEIKVIGQV 672 >UniRef50_A8LMR6 Flagellar biosynthesis protein FlhA n=18 Tax=Rhodobacterales RepID=A8LMR6_DINSH Length = 698 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 166/575 (28%), Positives = 295/575 (51%), Gaps = 20/575 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 NFIV+TKGA R++EV ARF LD MPGKQ+AIDAD++AG I+ A+A+ RR+ +E F+G Sbjct: 132 NFIVITKGASRMAEVGARFALDGMPGKQLAIDADMSAGAIDHAEAKRRRETEQAETTFFG 191 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 ++DGASKFV+GDA+AG++I A+NLI G+ IG+ +++ AF+ Y ++T+GDGLV QIP Sbjct: 192 SLDGASKFVKGDAVAGLLITALNLIMGLVIGMTLHDMPLGEAFRTYSILTVGDGLVTQIP 251 Query: 134 SLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF 193 ++++S AAA+++ + + + Q P+ L T +MF+ A++PG+P +PF L Sbjct: 252 AVIISIAAALLLAKGGSDEKADIAISAQFGRHPAALATVGFMMFLFALIPGLPFIPFTLG 311 Query: 194 SALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLV 253 + +LG + ++ + E ++ + I ++ I ++ LV Sbjct: 312 AMVLGGAALYLYRKTPDSPEGEDK-----PAAQTDRPREATMGDILDVDEIHVTFSTDLV 366 Query: 254 ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADI 313 + + A G L RI+ +R I+ GV+LPEIR+ ++ L + YAIF++G++ + Sbjct: 367 SSILDAAGG-LDTRIQSMRNHIASEFGVILPEIRLTDDAGLPDASYAIFLHGVEEARGQL 425 Query: 314 PADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHV 373 D+++ L E + E +P YG P WI+ +++ + +G + S V+ATH+ Sbjct: 426 YPDRILLLLPEEGFREPTEYDVKEPVYGAPARWIEKSERDEVSLLGMTTVASTEVLATHL 485 Query: 374 NKIVRSYIPDLFNYDDITQLHNRLSSTAPR--------LAEDL-SAALNYSQLLKVYRAL 424 ++V+ + L + +L L++TA L E+L + L+ + R L Sbjct: 486 LEVVKGNLARLMTLKALRKLIGELTNTADAARNEANRLLVEELIPDRVTNDTLIAILRLL 545 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNN 483 L E VS+R++ I + + ++ + VR L I R + + L Sbjct: 546 LEERVSIRNLPLILEAIAEAKQISSAIDGIHEYVRQRLSFQIVSDLKRSDGTIPLIQLAQ 605 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQL 543 E E + + G V + P++ + + + +G +P ++ + Sbjct: 606 EWEQIFAANSIGREDGAA----DVALPPDLFQKLIQNASEKVVKANESGVNPAIVTSVRR 661 Query: 544 RPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L+ + VLS+ E+ ++G + Sbjct: 662 RRFLSTVLASKGLQVPVLSFEELGKTNRPSLVGVV 696 >UniRef50_A6GN34 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN34_9BURK Length = 705 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 161/579 (27%), Positives = 278/579 (48%), Gaps = 18/579 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + +NF+V+TKG+ER++EV+ARF+LD MPGKQM+ID+DL AGLI QA A+ RR D+ Sbjct: 121 FLIISVVNFLVITKGSERVAEVAARFSLDGMPGKQMSIDSDLRAGLITQAVAKQRRSDLE 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+ DAIAG++I +NL+GG+ +G+ + +S A Y ++++GD Sbjct: 181 KESQLFGAMDGAIKFVKNDAIAGLVITVVNLLGGLTVGMMQKGMSFSEAGSVYTILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRV----SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV 182 GLVA IPSL++S AA +IVTRV +D + A D+ L + + L + F+ A V Sbjct: 241 GLVAIIPSLMVSIAAGLIVTRVTKGEADGSNTAQDMLKDLSRNSNALQISGIFCFLFAFV 300 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PGMP FL SA L + +S++ +AEE + T + S + + + I Sbjct: 301 PGMPSYVFLATSATLLCGWYFISRK--TDKAEEVDVSTQFSDMLSASGKSIKMDDILHTN 358 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 + L +L ++ N + R R + G+L P + E S + Sbjct: 359 TFA-PLEVRLPVDIEPTAANQIQNICRIARNRRVEQLGILFP---LFEFINHTESFVEFY 414 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQ---GNDPAYGMPVTWIQAAQKAKALNMG 359 + G+ A I +L + G++ D G QK Sbjct: 415 VYGVPAMSIHISEKRLSIRSDQSLVQAVPGIEFVIEKDVVTGKYDMLCDPLQKTLLDQHK 474 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 + + + + + + ++ + LF ++ + L ++L L +++++ Sbjct: 475 LEYLTFETRLVSQIEALLVQKVDQLFTLNEYQRHMTTLGDKYTEQLKELERVLPVTKVVE 534 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVY 479 V + LL E VS++++ +I L+ +D +++A VR L I H +++L V+ Sbjct: 535 VLQRLLGESVSIKNMRSILNSLIEWGQRERDPMVIAEQVRRGLFEQICHQHTHERKLKVF 594 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 L E E L+ G V +DS + LN+ + + P ++ Sbjct: 595 MLGVEFEQLIRESSRSDGNGSFVDIDS-----SSLNELIEIVEEQCRPHLVGNYVPAIVC 649 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R + + + VLS+ E+ +E++++G + Sbjct: 650 SMDCRVFFRQIIQDSLFIIPVLSHQEISSNMEIQVLGNI 688 >UniRef50_C6NYG1 Flagellar biosynthesis protein FlhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYG1_9GAMM Length = 703 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 207/574 (36%), Positives = 327/574 (56%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ INF+V+TKG+ RI+EV+ARF+LDAMPGKQMAIDADLNAG+INQ QA+ RR+ ++ Sbjct: 133 FAILVIINFVVITKGSTRIAEVTARFSLDAMPGKQMAIDADLNAGMINQEQAKKRRELIS 192 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFVRGDAIA ++I+ INLIGG+ +G+F++ +S +A Y L++IGD Sbjct: 193 AEADFYGSMDGASKFVRGDAIAAILIIIINLIGGLIVGVFQHGMSLSSAAHTYTLLSIGD 252 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSV-LYTATGIMFVLAVVPGM 185 GLVAQIPSL++S AA ++V+R SD+ ++ H V QL L I+ + ++PGM Sbjct: 253 GLVAQIPSLVISIAAGLLVSRGSDDAEMGHLVSRQLFYDNRYGLLVTAIILGITGIIPGM 312 Query: 186 PHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPIS 245 PH FLL++ L G + + + + E+ T E+ + + +EPI Sbjct: 313 PHWAFLLYALLTGSIWYVLQRSKVRE--AEQVSATTAAEAPAVVEEPIDARVLKRVEPIG 370 Query: 246 LSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 L++GY+L+ L+ K L +R+ +R+ IS+ G +LP I + ++ L+P Y I I+G Sbjct: 371 LAIGYQLIPLMQKD--GELQKRLNLLRRRISESAGFVLPAIHVTDDLTLRPGGYRIEIHG 428 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 I ++ AD+L+A+PS I G + DP YG WI + A +GY V+D+ Sbjct: 429 IGEAHGEVHADQLLAIPSGSDTPPISGSRTTDPVYGATAFWIARERADDAELLGYTVLDA 488 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRAL 424 A+V+ TH++++++ ++ D+F +L + ++ +L + + + +L KV R L Sbjct: 489 ATVVTTHLHEVLQKHLADIFGLKQTQELLDVVARRNEKLLDSVIPRIVTAPKLTKVLRDL 548 Query: 425 LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV----RKQELTVYT 480 + E VSLRDI I L L +R L R I + R L Sbjct: 549 VREQVSLRDITAILESLAEDGKENLPTEQLVEMIRSRLGRQIVTDLLLGRDRGAPLQAAV 608 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 ++ E++++L A Q + ++P++L + Q QM+ PV+LV Sbjct: 609 MSPEMDSVL----QTAIQTAAAAGTAPTLEPSVLLHLTQAVRQAVTQMEGQSMRPVILVR 664 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKI 574 +R L+ + R + VL + EVP E+++K Sbjct: 665 DAIRYALSGWLRSAGIVVPVLGFAEVPGEIQVKS 698 >UniRef50_Q1D0P1 Type III secretion protein, FHIPEP family n=6 Tax=Cystobacterineae RepID=Q1D0P1_MYXXD Length = 688 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 187/591 (31%), Positives = 291/591 (49%), Gaps = 29/591 (4%) Query: 1 MLSRSD-------LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 + R D L + +VVTKGAER++EVSARFTLDAMPGKQM+IDADL AG I Sbjct: 107 FVVRGDYVVGAVVFAILTLVQLLVVTKGAERVAEVSARFTLDAMPGKQMSIDADLRAGAI 166 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 +QAQA+ RR+D+ E+ +GAMDGA KFV+GD IAG++I+A+NL+GG IG+ + + Sbjct: 167 DQAQARRRRRDLERESQMFGAMDGAMKFVKGDVIAGLVIVAVNLLGGTVIGVLQGGMPLA 226 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLY 170 A + L+ IGDGLV+Q+PSL ++ AA ++VTRV+ + ++ Q L+ Sbjct: 227 EAASTFALIAIGDGLVSQVPSLCIAVAAGLVVTRVASEKEEDTLGAEIGAQFFGEARTLW 286 Query: 171 TATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSE 230 G+ LA++PGMPH+ FLL + LG G +S+ + E+ Sbjct: 287 VVAGLCVALALMPGMPHVTFLLLAGGLGGLGHVLSRAGVPKVEEKAGAPADGVAPGAAGA 346 Query: 231 QQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR- 289 S + + P++L + L L + + + + GVR + GV +P IR+R Sbjct: 347 PPESAASPVGVSPLTLDMAPDLTVLAEAEGAAFVHKTLNGVRDELFFELGVRVPGIRVRT 406 Query: 290 ENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYG--EIDGVQGNDPAYGMPVTWI 347 + L P +Y + ++ + A + L AL + ++ +P+ G ++ I Sbjct: 407 QAAYLGPGEYRVLVDEVPAGGGQVLPGALYALAPPDELAFLQVSAEAATEPSSGKVISRI 466 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 + + + +++ HV I+R DL D+ L L + AP L ++ Sbjct: 467 PESARVLLETAQVPLRRPGELVSDHVRAILRVRAADLLGLQDVQGLLEGLEAQAPVLVKE 526 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + L V R LL EGVS+RD+ I LV S T D + LA R ALRR ++ Sbjct: 527 ALQKVPLPLLTDVLRKLLQEGVSIRDLRAILEALV-SPTTEGDAVALAERCRQALRRYLS 585 Query: 468 HPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQ 527 H F L Y ++ E+E +L + + DP + + + QV + Sbjct: 586 HKFAPTGPLYAYLVDPEVEEVLRG----------MGPRGLAPDPERVAEILEGVRQVATE 635 Query: 528 MKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 VLL P +R L R P + VL+Y E+ L+++ +G L Sbjct: 636 G-----RAVLLTAPDVRRPLRRLCEGAFPDVAVLTYGELDGALQIRPIGRL 681 >UniRef50_A5P6J9 Flagellar biosynthesis protein FlhA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6J9_9SPHN Length = 700 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 200/576 (34%), Positives = 314/576 (54%), Gaps = 18/576 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L L+ IN +VVTKGA R+SEVSARFTLDA+PGKQMAIDADL AGL+ +A+ RR+++A Sbjct: 119 FLILMIINLMVVTKGAGRVSEVSARFTLDALPGKQMAIDADLAAGLLTADEAKARRREIA 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYG+MDGASKFV+GDA+A ++IL IN+I G+ +GI + L+A A + YV + +GD Sbjct: 179 TEADFYGSMDGASKFVKGDAVAALLILLINVIAGLVLGISTHGLTAGEAAETYVTLAVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 LVA +P+LLLS AAA+IVTRVSD D+ + QL A P + I+FV+ +P MP Sbjct: 239 ALVASVPALLLSIAAAVIVTRVSDARDLTGQIGGQL-ADPKIWLPVACILFVIGCIPAMP 297 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L S+ + +R+ K A + + + ++ E + +++ Sbjct: 298 QSIILPLSSGTFYLWFRLRKNHEARK-------EMPEPEAKPDPSHITIEEVTDQTLVTV 350 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 LGY L++L D +G L R+ G+R+ + G ++P+ RI ++F L P Y I + G Sbjct: 351 QLGYGLISLTDDKRGARLVSRLTGLRKQMCQTFGFIVPQFRIEDSFELDPDAYRITLGGA 410 Query: 307 KADEADIPADKLMALPSSETYGE--IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVID 364 I L+A+ + E G + G+ DP++G P WI+ + A+ GY +D Sbjct: 411 TLGGGKINPGHLLAIDTGEVIGSQTVPGIPTVDPSFGCPALWIEQGARDLAIAEGYLTVD 470 Query: 365 SASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRA 423 SVIAT V++++ + DL D + L L + +L + + L+ + L ++ R+ Sbjct: 471 PESVIATQVHQLLGARAQDLLGPDQVRDLIEHLRTRHAQLIDSITPQPLSLAALTRLLRS 530 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLN 482 LL +G+SLR + + + + ++ T +H L VR L I +L V TL Sbjct: 531 LLADGISLRHALRVFSSISLAAQQTAEHGRLIDIVRADLGGMIVAEVCPPDAKLPVITLA 590 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 LE ++T + G + ++P++ + + Q A P L+V P+ Sbjct: 591 ARLEEMVTGGLQDPSSGEII------IEPDLARSIGERIAAIIGQRDPAATRPALIVQPR 644 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L+ RL AP VLS NE+P ++++ + Sbjct: 645 ARRALSALLRLRAPQCLVLSINELPVAQPIEVIAVV 680 >UniRef50_C3KN99 Type III secretion protein, RhcV family n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN99_RHISN Length = 714 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 163/586 (27%), Positives = 271/586 (46%), Gaps = 24/586 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV ARF LDAMPGKQM+ID + +G I+Q +A+ +R D+ Sbjct: 123 FLIITIAQFVVITKGAERVAEVGARFALDAMPGKQMSIDNEARSGDIDQQEARRKRDDLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ FYGAMDGA KFV+GDA+AG++I+AINLIGG+ IG + L+ A Y L+T+GD Sbjct: 183 RESQFYGAMDGAMKFVKGDAVAGLIIIAINLIGGLAIGSLQRGLTVGEAAHTYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL++QIP+L+++ AA +VTRV D++ ++ QL AS L A I+F +VP Sbjct: 243 GLISQIPALMMAVAAGAVVTRVPSGRRPQDLSSEILGQLGASDRALALAAAILFGFGLVP 302 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQ---------QVS 234 G P + F + L G + K+ A E + + + Sbjct: 303 GFPLIVFWPLAGLAGLLAYAARKRQAAEEVTGSAQNRREARPVSPGGRVVDHIAGNLPGA 362 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRL 294 + + ++L++G L + +R + + I + G+ +P I + RL Sbjct: 363 GSDLGMAHRLTLTMGEGLGERLPPP---LFAERTESLAEAILEDLGIRVPAIGRLTDARL 419 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPA-YGMPVTWIQAAQKA 353 +++ I G+ + + D LMA + + P G+ + WI + A Sbjct: 420 ATAEFRIDFEGVPVVDGALLPDHLMAWDETVDLDILSIPYVTQPDLMGLKLVWIDRSHAA 479 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 G ++A V+ T V +++R Y PD + + L RL T L +++ ++ Sbjct: 480 ALDAAGVGYCEAADVVMTLVERVLRRYAPDFIDAQETRALLGRLEGTFGDLTKEVLDVVS 539 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK 473 +L V R L+ E V + ++ I + ++ LA VR L R I Sbjct: 540 AQRLSDVLRRLIEEDVPITNMRIILQTIAERGAQIQNLQALADHVRAGLGRQICFRLADS 599 Query: 474 QEL-TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAG 532 + + Y L E+ L V + + V + + + +E+ A Sbjct: 600 NRIVSAYLLTRPFEDELRAAVEKNSG------PAGAVPERLAAPILEELKKRREK-AGAQ 652 Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +L LR + + VLSY E+ E ++ +G + Sbjct: 653 SRAAILTSMDLRRHIRNLLMRHDVQMAVLSYQEIAAEFSVQCLGYI 698 >UniRef50_Q12T85 Type III secretion FHIPEP n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T85_SHEDO Length = 680 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 177/574 (30%), Positives = 283/574 (49%), Gaps = 20/574 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ + F+VVT GA+R++EV+ARFTLD+MPGKQM+IDADLN G+I++ QAQ RR + Sbjct: 117 FFILVVVQFLVVTNGAQRVAEVTARFTLDSMPGKQMSIDADLNMGIIDEKQAQERRAYIE 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA+FYGAMDGA+KFV+GDAIA ++I+ IN+IGG+ IG+ + L A Y L T+GD Sbjct: 177 KEANFYGAMDGATKFVKGDAIASIIIILINIIGGLAIGVAQAGLPWQQALHIYTLQTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 G+V QIPSL+++ II+TR + G++A + Q++ P L ++ A +PG+P Sbjct: 237 GIVTQIPSLIIAVGTGIIITRAATQGNLADQLFGQIVTHPFTLTLVAVVISSAAFLPGLP 296 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L +L G+ K+ E+ E T T E + I P L Sbjct: 297 SLTLILVGITFALFGYFAHKKKQLKLIEKTFREFENTKKTSTQESLLQVAFSSQIWPQIL 356 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 A+ + ++ + G+ LPE+ ++ LK +Y+I ++ I Sbjct: 357 ------------AEETEIQRQFSRFKSEFESKYGLFLPELLLKAESVLKADEYSIRLSNI 404 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + + DK+M + + G+ +PAYG+ W+ A + G V++ Sbjct: 405 EFASGVLHPDKMMVIDPQNKLDKKMGLAAVEPAYGLNALWVDADKAKDIKQGGMTVVEPI 464 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYRALL 425 SV+ TH+ + V+S+ + + QL L ++ L + + +++ L+ Sbjct: 465 SVLMTHITEFVKSHSAEFVTRQFVDQLVAEQREINEVLVSEVIPTQLAIADVQQIFTHLV 524 Query: 426 TEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNE 484 E V L + I VL + KD LL VR LR +T + + L + ++ Sbjct: 525 QEKVCLHNANHIFEVLADKARHEKDVQLLTEFVRQRLRNQLTSLLLDNDRTLNIISIAPL 584 Query: 485 LENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLR 544 LE L N V+ + + P L+ E+ + G +PVLLV P +R Sbjct: 585 LERALLNG------AANVITKGLQISPTDLDSLVKQAVLFVEKAISLGAEPVLLVNPTIR 638 Query: 545 PLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L + P LHV+S NEVP ++L +G + Sbjct: 639 RPLWQLLNRTVPLLHVISVNEVPHHIKLNSLGVI 672 >UniRef50_A3PKA8 Flagellar biosynthesis protein FlhA n=9 Tax=Bacteria RepID=A3PKA8_RHOS1 Length = 704 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 206/577 (35%), Positives = 308/577 (53%), Gaps = 14/577 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ IN +V+TKGA R+SEVSARFTLDAMPGKQMAIDADLNAGL+N +A+ RR DVA Sbjct: 125 FAILVIINLVVITKGAGRVSEVSARFTLDAMPGKQMAIDADLNAGLLNPDEARERRADVA 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +EADFYGAMDGASKFV+GDA+AG++IL IN++GG+ IG ++ L A + YVL++IGD Sbjct: 185 AEADFYGAMDGASKFVKGDAMAGILILIINIVGGIIIGTLQHGLGVMQAAETYVLLSIGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLVAQIPSLLLS A AIIVTRVS D++ + Q+ +M +L + PGMP Sbjct: 245 GLVAQIPSLLLSIATAIIVTRVSSTTDMSVLIGKQM-GIGRAWVPVAAVMLILGLTPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQP---LAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 +L FLL W + A + + ++ E + P Sbjct: 304 NLLFLLGGVAAAAMAWVAFAREGAGAKGTAAAGGAQPAVEAGAAPGPEAITTEDVTDYAP 363 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 ISL +GY L+ L G L RI +R+ +S G ++P +RIR++ L P+QY I + Sbjct: 364 ISLQIGYGLIPLA-GDNGGALVARITAIRRDVSKALGFVVPGVRIRDDLGLAPNQYRIRV 422 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 E + D+ +ALP + +++G+ DP++G+ +WI Q A+A + V+ Sbjct: 423 GQAILAEDTVYPDRKLALPGGASRRKLNGIAVRDPSFGLEASWILPHQVAEAEADDHVVV 482 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYR 422 + SVIATH+++I+ + L DD+ L + L TAP L + + + L V + Sbjct: 483 EPESVIATHLSQILVKHAAQLIGQDDVQGLVDALGRTAPTLVQSVVPKLVPLHVLTAVLK 542 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTL 481 ALL + + + D+ I L + + + +A +R AL + Q L + TL Sbjct: 543 ALLADRIPVSDMRRILEGLSDLAGRSLQPVEMAEALRPALVPLLLQQMGPISQPLPLITL 602 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 +LE LL Q + + VD + + + + E GK ++V Sbjct: 603 EPDLEQLLLRSRRQGD-------EMLLVDNGLAQSLLTALSERLETASGQGKQAAVIVAQ 655 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LR A + R P V+ E+P+ ++++G + Sbjct: 656 PLRRAFAAFVRPHLPDAVVIGMGELPEARRVEVLGTV 692 >UniRef50_A0RCA3 Flagellar biosynthesis protein n=48 Tax=Bacillus cereus group RepID=A0RCA3_BACAH Length = 693 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 175/582 (30%), Positives = 293/582 (50%), Gaps = 17/582 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L+ FIV GA R +EV+ARFTLD++PGKQM+IDADLN +I + AQ +RK + Sbjct: 118 FTVLIIFQFIV-ANGASRTAEVAARFTLDSLPGKQMSIDADLNQRIITEKDAQAKRKKLN 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E +FYGAMDGA KF++GD I G++IL +N+I G+ +G+ + +S A Y +T+GD Sbjct: 177 METEFYGAMDGAGKFIKGDVIFGIVILFVNIIFGLIVGMMQQGMSFGEAALHYTQLTVGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 G+V QI SL+L+ + IIVTRV + + +LLA V+Y G+ + + Sbjct: 237 GIVNQIGSLMLAISTGIIVTRVFDGSPDTVTEGIFKELLAHEVVVYALGGLFIAMGIFTP 296 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEE--KSLETLTRTITETSEQQVSWETIPLIE 242 +P LPF L + F G R K+ + +E K +E + + + + S+ Sbjct: 297 LPFLPFALVGGTIIFLGIRNKKRIKKEKEDELQKEIEMIQGEDEQLQQVEDSFGVFTDKY 356 Query: 243 PISLSLGYKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQYA 300 PI + LG L ALV K G ++ +R+ I G+ +P I ++N +P +Y Sbjct: 357 PIIVELGLDLAALVKQKINGETARDKVVLMRKSIITDLGINVPGINFKDNTSFRPRGRYI 416 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 I I G KA E + + L+AL + ++D DP +G WI A GY Sbjct: 417 IRIKGAKAAEGVLKSGYLLALKTPNVMADLDAEPAKDPIFGEDGYWILEHMVQDAQMKGY 476 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLK 419 QV++ S++ TH++ +VR + +L + L N L + L E++ ++ S + Sbjct: 477 QVLEPLSILITHLDVVVRRNLHELIQRQHVKDLINSLENDNGVLLEEIKKKEIDLSLVQN 536 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDH-ILLAADVRLALRRSITHPFVR-KQELT 477 V + LL EG+S+RD+ TI ++ + ++H + + VR + + I ++ Sbjct: 537 VIKQLLKEGISIRDLPTIIEGIIDGKEIYQNHVDGVTSFVRECISKVICENAKNPDGKIY 596 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVL 537 ++ +E L +VVN + QG + D ++ + + +V +Q + G++PVL Sbjct: 597 AALFSDSIE-LDADVVNNSYQGYLLNWDL-----DLETRVVEQVQRVFKQARLMGREPVL 650 Query: 538 LVPP-QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L R + R + VL +E+ E+ + + + Sbjct: 651 LTRRKDFRFAIVRLLERYQVEAQVLCISELAPEIVVDQIAYI 692 >UniRef50_A0AGD5 FlhA protein n=47 Tax=Bacillales RepID=A0AGD5_LISW6 Length = 691 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 165/576 (28%), Positives = 291/576 (50%), Gaps = 18/576 (3%) Query: 14 NFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYG 73 FIV G+ R +EV+ARFTLDA+PGKQMAIDADLN LI + +A+ +R + E +FYG Sbjct: 120 QFIV-ANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITEPEAKEKRAYLNMETEFYG 178 Query: 74 AMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIP 133 AMDGA KFV+GD + +++ +N++ G+ +G+ + LS A +Y +TIGDG+V+QI Sbjct: 179 AMDGAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFGEAAVKYTELTIGDGIVSQIG 238 Query: 134 SLLLSTAAAIIVTRV--SDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 SLL++ +A +IVTRV + ++A + +L+ + V+YT + + ++ V +P +PF+ Sbjct: 239 SLLMAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSIVVYTLSAMFILMGVFSPLPAIPFV 298 Query: 192 LFSALLGFTGWRMS---KQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSL 248 +LG G+R K+ E E++ + T + +E ++ P+ + L Sbjct: 299 GIGVVLGIIGYRTQFNLKKKEQLELEKEMELIQSETNSAEAEHNQAFGAAREKFPVVVEL 358 Query: 249 GYKLVALV-DKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKP-SQYAIFINGI 306 G + ALV K G ++ +R+ I G+ +P I ++N +P +Y I + G+ Sbjct: 359 GLNIAALVKQKMNGETAKDKVVLMRKSILQDLGIGVPGINFKDNTSFQPRGKYEIKVKGV 418 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 + A L+AL + ++D DP +G WI + A YQV++ Sbjct: 419 AVASGVLKAGHLLALKTPGVMMDLDAEPTKDPIFGEDGYWILPGELEDAQMKNYQVLEPL 478 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAA-LNYSQLLKVYRALL 425 S++ TH++ ++R + +L I L + L+ L +++ ++YS + V R LL Sbjct: 479 SILITHLDVVLRKNLHELLMRQQIKDLIDGLADENQILIDEIKKKEIDYSLIQGVLRQLL 538 Query: 426 TEGVSLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPF-VRKQELTVYTLNN 483 EG+S+RD+ TI ++ T+ D + A VR + + I + ++ L + Sbjct: 539 KEGISVRDLPTIVEGIIDGQTIYPNDLDGITAFVRERISKVICEQAKNQDGKIYALLLQD 598 Query: 484 ELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP-Q 542 +E + T +VN G + P + + + G++PV+L Sbjct: 599 SIE-MDTEIVNTPYYGYALNWALDKELP-----IIQKVRDTVNKAQLTGREPVILTRRKD 652 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R R + + VLS +E+ E E++ + + Sbjct: 653 FRFGFVRVLERYQLDVPVLSISELSPETEVEQIALI 688 >UniRef50_A3P6H9 Type III secretion protein, HrcV family n=18 Tax=pseudomallei group RepID=A3P6H9_BURP0 Length = 705 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 163/597 (27%), Positives = 293/597 (49%), Gaps = 36/597 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + T+ FIV+ KG+ER++EV ARFTLDA+PGKQM+IDADL +GL++ +A+ +R +A Sbjct: 116 FAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSGLLSTEEARKKRATLA 175 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I IN++ G+ +G+ + +SA A ++ ++++GD Sbjct: 176 VESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGD 235 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN-----GDIAHDVRNQLLASPSVLYTATGIMFVLAV 181 +V+QIPSLLLS AA +++TRV+D + ++ +QL +S LY A ++ A Sbjct: 236 AMVSQIPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAA 295 Query: 182 VPGMPHLPFLLFSALLGFTGWRMSKQ-PLAAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VPG P F+L +A L F G+R+S++ ++ A + R + + + +P Sbjct: 296 VPGFPAALFVLLAAALAFAGYRLSRKGSPSSGAARGQEQEALRAMQRSGAKADVPPILPR 355 Query: 241 IEPISLSLGYKLVA-LVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 + ++G ++ L L + + R + D G+ P + + + L + + Sbjct: 356 APQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFPGVTMWIHPTLAAATF 415 Query: 300 AIFINGIKADEADIPADKLM------------ALPSSETYGEIDGVQGND-----PAYGM 342 + I+ + +PA K M AL + D ++ ++ A G Sbjct: 416 EVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQ 475 Query: 343 PVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAP 402 WI A+ V + +IA +R++ P ++ + ++L + +P Sbjct: 476 ATHWIDEP----AVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSP 531 Query: 403 RLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLAL 462 L ++ L +++ V R LL E +S+R++ TI LVA KD ++L VR L Sbjct: 532 GLVAEVLKILPSTRIADVLRRLLEEQISIRNVRTIMESLVAWGAKEKDMLMLTEYVRGDL 591 Query: 463 RRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTM 521 R + H + ++ L+ + + E + + Q G + L P+ ++ + Sbjct: 592 SRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALP-----PDDASRLVDRI 646 Query: 522 PQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 + A D L+ +R + R L V SY E+ + +EL+ +G + Sbjct: 647 QSLVG--ANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRV 701 >UniRef50_A1B5C1 Type III secretion FHIPEP protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B5C1_PARDP Length = 694 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 161/583 (27%), Positives = 277/583 (47%), Gaps = 25/583 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + +NF+V+TKG+ R++EVSARF LD++PGKQ+AID DLN+G I+ +A+ RR Sbjct: 124 FAVITVVNFMVITKGSGRMAEVSARFALDSLPGKQLAIDGDLNSGAIDHDEAKRRRAREQ 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E F+G++DGASKFV+GDAIAG++I INL G+ G+ + + A Y +TIGD Sbjct: 184 REISFFGSLDGASKFVKGDAIAGLVITLINLFVGLAAGVILHGMPVAEAMSTYSRLTIGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 GLV+QIP+L+ S AAA++++R A + Q L++ V + M + +VPGMP Sbjct: 244 GLVSQIPALITSMAAALLLSRGGATETTADLLSQQFLSNWQVPFICAVGMLFIGLVPGMP 303 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L F +A+LG W + + E+ + Q + + I + Sbjct: 304 TLVFFGLAAVLGVAAWFIRARQDKTRPED----AAPVESHAAASAQTRIGDVLDTDEICV 359 Query: 247 SLGYKLV-ALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFING 305 +G L+ + +D +G L QRI +R I+ G++LP++RI + + +Y + + G Sbjct: 360 EIGAGLILSALDPVRG--LGQRITNLRLHIARAYGMILPDVRITDGTGFQEGEYVVRLQG 417 Query: 306 IKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDS 365 + + + ++AL + E+DG +P YG WI + +A G V+ Sbjct: 418 VVRGKGVLRPQGVLALGAEAMLDELDGENVREPVYGSAARWIAPEWQDEAAIAGATVVTP 477 Query: 366 ASVIATHVNKIVRSYIPDLFNYDDITQLHNRL---SSTAPRLAED------LSAALNYSQ 416 V++TH+ ++V++ +P L + ++ L S + + Sbjct: 478 MEVLSTHLMEVVKTNLPALLTMSSMQRMIRELCSVSDEHRAQLNQRFFDSMVPDKVPPEM 537 Query: 417 LLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQE 475 LL V R LL E +S+R++V I + + + VR LR IT F+ Sbjct: 538 LLAVLRGLLEERISVRNLVLITDAVHE-ARGGASPEAVYEQVRKRLRGQITEQFLDEDGY 596 Query: 476 LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP 535 L + L+ + E + ++ + G + P + + + + G + Sbjct: 597 LELLQLHPQWEAEIARSEAESARAGNGAI------PQIQKRLADALQATLSGLPP-GIEV 649 Query: 536 VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 VL VP R L+ VL +E+ ++++ G + Sbjct: 650 VLAVPDHRRRLVRMMLSSAGIATPVLGLDEIDPGAQVRLRGTV 692 >UniRef50_Q11M51 Type III secretion FHIPEP n=1 Tax=Chelativorans sp. BNC1 RepID=Q11M51_MESSB Length = 691 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 168/580 (28%), Positives = 276/580 (47%), Gaps = 24/580 (4%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + F+V+TKGA+R++EV ARFTLD MPGKQM+IDAD+ AG ++Q A+ R+++ Sbjct: 119 FLIITVVQFLVITKGADRVAEVGARFTLDGMPGKQMSIDADVRAGNMDQLDARHARQNLE 178 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 EA +GAMDGA KFV+GDAIAG++I INL+GGV IG+ + + A Y L+T+GD Sbjct: 179 REAKLFGAMDGAMKFVKGDAIAGLVITVINLVGGVAIGMAQRGVGFGEALSLYALLTVGD 238 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLVAQIP+LL+S AA +VTRV++ D+ ++ Q +A+ + A I+ + +VPG Sbjct: 239 GLVAQIPALLISVAAGNMVTRVTNPNGMDLGAEIAQQFVANRRTIVMAGIIIALFGLVPG 298 Query: 185 MPHLPFLLFSALL-GFTGWRMSKQPLAAEAEEKS----LETLTRTITETSEQQVSWETIP 239 P F+ + + G W + +Q + + L+ L R E + + + E + Sbjct: 299 FPTWIFVSVGSAMTGGVIWTIRRQHRDVLSAQTDWSLRLDLLQRQCAEIAMRTGAKEAVR 358 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 LI P + YKL VR I+ G+ + E P Y Sbjct: 359 LILPKEI---YKLDVTA-------FFSAFEAVRISIAQEYGIP-TGYWLFEVDEGSPHSY 407 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 I++N AD AD L + +Y + G+ + Q+ + Sbjct: 408 QIYVNQELADCGIFRADSLFV-KAHTSYLDALGIPWLSGFGRREGALVPTDQEQRLAEEN 466 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLK 419 + H+ ++ + + + +IT + N + + P L DL A + +Q+ Sbjct: 467 IVYWRPMEQLLMHLKRVAVERLDVMASLQNITAILNEVQTNNPALVGDLREAASNNQIAG 526 Query: 420 VYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVY 479 V R LL E + + V I ++ S D LA VR+ + IT F L V Sbjct: 527 VIRNLLRERIPVTSRVRILEGILKWSQKRPDPGYLAQKVRIEIADFITKRFAADGFLPVV 586 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 ++ +E+L+ + ++G ++L +P++ Q+ + G DPVL++ Sbjct: 587 VVSPTVESLMREGMRNTEEGNFLIL-----EPSISAYIAKQAKQICGEEFRRGHDPVLIM 641 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 +R + L VL+Y E+ E + +G L+ Sbjct: 642 QQDVRLAMHNILYEHGIHLPVLAYQEITPETVIYPVGFLL 681 >UniRef50_Q48IR5 Type III secretion component, putative n=7 Tax=Gammaproteobacteria RepID=Q48IR5_PSE14 Length = 727 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 163/592 (27%), Positives = 279/592 (47%), Gaps = 30/592 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + F+V+TKGAER++EV+ARFTLDAMPGKQM+ID DL G I+ +A+ RR + Sbjct: 123 FLIITVAQFVVITKGAERVAEVAARFTLDAMPGKQMSIDNDLRNGDIDPFEARRRRSRLE 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++IL +NL+GG+ IG+ + + A Y L+T+GD Sbjct: 183 RESQMFGAMDGAMKFVKGDAIAGLVILFVNLLGGMMIGMVQRGMPFAEAAHVYSLLTVGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG---DIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GL+AQIP+LL+S AA +VTRV+ +G D+ ++ QL AS L I+ + ++P Sbjct: 243 GLIAQIPALLISVAAGTVVTRVNSDGEERDLVTEIVRQLSASHRALGLTALILLGVGMLP 302 Query: 184 GMPHLPFLLFSALLGFTGWRMSKQ--------------PLAAEAEEKSLETLTRTITETS 229 G P L F+ +A+LG + + + ++ AE + + + + Sbjct: 303 GFPLLVFVGLAAVLGGSAFVLWRRDRRAARSLVKDELQEHETMAEPGASSGASGASNDAA 362 Query: 230 EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIR 289 E + P + LS+G L + A PL QRI + I GV +P + Sbjct: 363 EDALESAERPRDSQVLLSIGTGL---AEAAPLQPLRQRIEALCHDIRINLGVEVPLPEVY 419 Query: 290 ENFRLKPSQYAIFINGIKADEADIPADKLMALPS--SETYGEIDGVQGNDPAYGMPVTWI 347 + L ++ + + G+ E + L+ ++ + P P W Sbjct: 420 LDRSLPVDRFQVELEGVPVSEGEFSGMALLLQDDPVHAQLVSVETFEAPSPIGSRPGRWA 479 Query: 348 QAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED 407 + + G + + V+ +++ +R Y D + + +L L ++ Sbjct: 480 GREHADRLQDAGIGFLFADEVLREVLDRTLRRYAADFLGIQETRLMLEQLEGKYGELIKE 539 Query: 408 LSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSIT 467 + L ++ + R L++EGVS+R + +V ++ D L +R L R I+ Sbjct: 540 VLRILPLQRIAEALRLLVSEGVSIRSRRGLLESMVEWGSIESDAGRLTEHLRAGLARQIS 599 Query: 468 HPFVR-KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKE 526 H + + ++ + L LE L + + ++ + D + + ++ + Sbjct: 600 HQYADRNRVISAFVLAPALEEQLRATLARQEKSRDSLPDDIG------RTVLVQLRRLCD 653 Query: 527 QMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 M VLLV +LR + R L VLS+ E+ E L+ +G + Sbjct: 654 -MLPEHDLTVLLVHSELRRCMRRLIVRGELQLAVLSFRELASEYNLQAVGTV 704 >UniRef50_P80150 Protein hrpC2 n=18 Tax=Proteobacteria RepID=HRC2_XANEU Length = 645 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 148/580 (25%), Positives = 271/580 (46%), Gaps = 63/580 (10%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + T+ FIV+ KG+ER++EV ARFTLDAMPGKQM+IDADL G + +A+ +R +A Sbjct: 121 FLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGGNLTADEARRKRARLA 180 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G MDGA KFV+GDAIAG++I +N++ G+ +G+ + ++A A ++ ++++GD Sbjct: 181 MESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGD 240 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG-----DIAHDVRNQLLASPSVLYTATGIMFVLAV 181 +V+QI SLL+S AA +++TRV++ + D+ QL ++ L A+ ++ A Sbjct: 241 AMVSQIASLLISVAAGVMITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAF 300 Query: 182 VPGMPHLPFLLFSALLGFTGWRMSKQPL-AAEAEEKSLETLTRTITETSEQQVSWETIPL 240 VPG P + FLL +A +G G+ + ++ + +++ L + +R + + Sbjct: 301 VPGFPAVLFLLLAAAVGAGGYTIWRKQRDISGTDQRKLPSASRKGAKGEAPHIRKNAPDF 360 Query: 241 IEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYA 300 P+S+ L +L AL+D A+ L Q I R+ + + G+ P I I + L+ QY Sbjct: 361 ASPLSMRLSPQLAALLDPAR---LDQAIESERRQLVELLGLPFPGIAIWQTESLQGMQYE 417 Query: 301 IFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGY 360 + I+ + A++ +++ Q P Sbjct: 418 VLIHDVPETRAEL--------ENTDDMQAALARQAISP---------------------- 447 Query: 361 QVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKV 420 + + + + +++ P L +++ A+ ++ V Sbjct: 448 ----------------LHARAHLFVGIQETQWMLEQVAVDYPGLVAEVNKAMPAQRIADV 491 Query: 421 YRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPF-VRKQELTVY 479 R LL E + +R+I +I LV KD ++L VR L R + H +L Sbjct: 492 LRRLLEERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAV 551 Query: 480 TLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLV 539 L++ +E L+ + G + L P NQ + ++ ++ Sbjct: 552 MLDHAVEQLIRQSIRATAAGNFLALP-----PEQANQLVEQVERIVGDHAQ--HPLAVVA 604 Query: 540 PPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM 579 +R + R L V S+ E+ E++L+ +G ++ Sbjct: 605 SMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPIGRVV 644 >UniRef50_Q0B7U0 Type III secretion FHIPEP protein n=20 Tax=Burkholderiaceae RepID=Q0B7U0_BURCM Length = 749 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 161/584 (27%), Positives = 272/584 (46%), Gaps = 20/584 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KG+ER++EV ARF+LDAMPGKQM+IDADL AG+I+ +A+ RR+ + Sbjct: 152 FLVIAVVQFIVIAKGSERVAEVGARFSLDAMPGKQMSIDADLRAGIISADEARERRERLE 211 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +GAMDGA KFV+GDAIAG++I IN++ G+ +G + + A Q+Y ++T+GD Sbjct: 212 QESQMHGAMDGAMKFVKGDAIAGLVIAFINIVAGIAVGTLMHGMDIGEALQRYAILTVGD 271 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD----IAHDVRNQLLASPSVLYTATGIMFVLAVV 182 G+ +QIPSLL+S AA I+ TRV+ + + QL A P L A ++ VV Sbjct: 272 GMASQIPSLLVSIAAGIVTTRVATRDTRQRQLGEQLGEQLGAHPRALLIAALVLAGFLVV 331 Query: 183 PGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 PG P F L + LG K+ A + T+ + + Sbjct: 332 PGFPKWSFALIALGLGAFAVTQLKRKTTAPSFNLIHIAGRIGATDDGQPAKVSHAAGVTS 391 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 I++SL L ++ AQ L + + + G + P I + ++ Y I+ Sbjct: 392 LIAVSLSDDLRTTLNLAQ---LQTALSSAKARVDADIGTVFPRITLNDDEGAPAGTYRIY 448 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 + + A + L+ + + WI+ A + Sbjct: 449 LQDVLAAHGALKPGWLLWDGVAPLPERAERQPAEAFGPFATALWIKPDGAAP----DGKW 504 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + S +A HV ++VR + +L + L + + P L +L+ + ++ +V R Sbjct: 505 LTSEGALAAHVEQVVRQHADELLGIQETQALVHLVRREHPELVGELTRLVPLQRVTEVLR 564 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTK-DHILLAADVRLALRRSITHPFVR-KQELTVYT 480 LL E V +R++ I L+ + D I L VR+ LRR IT ++L V Sbjct: 565 RLLAEQVPIRNLRVIFESLITWAPNEPDDVIALVELVRVDLRRMITDRHAGAARQLRVVL 624 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDP----- 535 L+ + + V + +QG + L S + ++ Q ++ + + +P Sbjct: 625 FEQNLQERIESAVMRTKQGNFLALSS-AIKQDIGEQVRAIVQAAQAAGAGGHGNPQGAPR 683 Query: 536 -VLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++V R + + P L VLSY EV ++++L +G + Sbjct: 684 LAVMVALGARRYVKTILQPVLPELAVLSYQEVEEDVQLHTVGWV 727 >UniRef50_P74856 Secretion system apparatus protein ssaV n=63 Tax=Gammaproteobacteria RepID=SSAV_SALTY Length = 681 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 160/577 (27%), Positives = 268/577 (46%), Gaps = 39/577 (6%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + FIV+TKG ER++EVSARF+LD MPGKQM+ID DL AG+I+ A+T R+ V Sbjct: 127 FTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQ 186 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F GAMDGA KFV+GD IAG++++ +N+IGG+ I I +Y++S A Y +++IGD Sbjct: 187 QESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGD 246 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L ++ +LA++PG Sbjct: 247 GLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPG 306 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P + FSALL + ++ E +P P+ Sbjct: 307 FPFITLAFFSALLALPIILIRRKKSVVS-------------ANGVEAPEKDSMVPGACPL 353 Query: 245 SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFIN 304 L L L L + I +R + + GV LPE+ I + + + Sbjct: 354 ILRLSPTL-------HSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY 405 Query: 305 GIKADEADIP--ADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 IP AD L+ + G P + W+ KA G V Sbjct: 406 QEPVFSLSIPAQADYLLI----GADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDV 461 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + I+ + ++ ++ + + L N + L ++L L +++ + + Sbjct: 462 FAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQ 521 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTL 481 L++E VS+RD+ I L+ + KD ++L VR+ALRR I + + L + + Sbjct: 522 RLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRI 581 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 +ENL+ + Q G L S ++ + Q+ EQ ++ Sbjct: 582 GEGIENLVRESIRQTAMGTYTALSSRH---------KTQILQLIEQALKQSAKLFIVTSV 632 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L + + +LS+ E+ +E ++++ ++ Sbjct: 633 DTRRFLRKITEATLFDVPILSWQELGEESLIQVVESI 669 >UniRef50_A1EBT8 SctV n=1 Tax=Lysobacter enzymogenes RepID=A1EBT8_LYSEN Length = 687 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 273/581 (46%), Gaps = 33/581 (5%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV+ KGAER++EV+ARFTLDAMPGKQ++ID+DL AGLI++ +A+ +R+ + Sbjct: 129 FLIITVVQFIVIAKGAERVAEVAARFTLDAMPGKQLSIDSDLRAGLIDKDEAKRKRRLLE 188 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIAG++I+ INL+GG+ IG+ + + A Y ++TIGD Sbjct: 189 VESQLHGSLDGAMKFVKGDAIAGIVIIIINLLGGLAIGVLQKGMPLADATHTYSILTIGD 248 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD---IAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIP++L + AA ++VTR + + D + + Q+ P VL + F + VP Sbjct: 249 GLVSQIPAILATIAAGLVVTRTAGDEDDRHLGESITRQVSGQPRVLLITGFLAFGMTFVP 308 Query: 184 GMPHLPFLLFS-ALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 G P L FL+ S LLGF WR + + E+ V+ + I Sbjct: 309 GFPKLVFLMLSVVLLGFAAWRYRHHHPVL----RRAFKVPEGERPAEEKTVNEDEIAPPA 364 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENF----RLKPSQ 298 P+ L L L A + RI + + + + GV LP ++ + Sbjct: 365 PLQLELAPSLAAAFGEHAA---RTRIVEIARRLREEYGVPLPVPALKISPDLDGDDGLGG 421 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 Y + G + + + G+ A +P + A + Sbjct: 422 YRLTAFGARLAFGRLSPNAQF----------RPARAGDANAPKLPGFFPPLAGEWTGQ-A 470 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 G + D + ++ H + + + + L R+ P L +++ + ++ Sbjct: 471 GADIRDGLATVSEHCRAALERRLASFIGIQEASNLFGRMQRDYPDLVKEMLRVVAPQRVA 530 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELT 477 V R L+ EGV +R++ + KD +LL VR+AL+R I + ++ + Sbjct: 531 DVLRRLVEEGVPIRNLRDAFEAITDVGGREKDVVLLTEYVRVALKREIADRYADGERTMQ 590 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVL 537 V ++ ELE+ L V A ++ + P + + + + + + G PVL Sbjct: 591 VLLIHPELEDRLRQSVRVAGGATQLA-----ISPELAGRLGAEVRSHLAR-QGEGIKPVL 644 Query: 538 LVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L +R L + + L VLSY E+ +L + G + Sbjct: 645 LCSLDVRRHLRKLLEIDFFELPVLSYQELAPDLRIVQAGQV 685 >UniRef50_Q0C5I9 Flagellar biosynthesis protein FlhA n=13 Tax=Alphaproteobacteria RepID=Q0C5I9_HYPNA Length = 692 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 159/576 (27%), Positives = 278/576 (48%), Gaps = 21/576 (3%) Query: 12 TINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADF 71 +NF+V+TKGA R++EV ARF LDAMPGKQ+AID+DL G I +A+ RR+ EA F Sbjct: 127 IVNFMVITKGAGRMAEVGARFALDAMPGKQLAIDSDLAVGAITHEEAKLRRQREQEEAGF 186 Query: 72 YGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQ 131 G++DGASKFV+GDAIAG++I A+NLI G+ G+ + LS A Y ++T+GDGLV+Q Sbjct: 187 LGSLDGASKFVKGDAIAGLLITALNLIAGIGFGVVAHQLSVVEALNNYSILTVGDGLVSQ 246 Query: 132 IPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFL 191 IP++++S AAA+++++ + G I + QL + + LY GI+ + A++PG+P LPF+ Sbjct: 247 IPAVIVSVAAALLLSKGREEGAIDRALGLQLAGNSTALYIVAGILAIFALLPGLPFLPFI 306 Query: 192 LFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYK 251 +A + K A ++ + + + + + I L + Sbjct: 307 AGAAGFAAVAYFTKK------AADEKAASEETKPEDAAPKAPKIGDSIYADEIHLEVAPD 360 Query: 252 LVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEA 311 LV +V + RI +R+ I++ G +LP IR+ +N LK ++Y + I G++ D Sbjct: 361 LVNMVLVGENG-FESRIDKIRRYIAEEYGFVLPPIRMTDNPTLKKNEYRMRIQGVRVDSG 419 Query: 312 DIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIAT 371 + +++AL + G + +P Y W+ +A+K + V++ V+AT Sbjct: 420 ILRPGQVLALIEENQLPHLAGEKVREPVYKAAARWLPSAKKQELAAAAVPVVEPIEVLAT 479 Query: 372 HVNKIVRSYIPDLFNYDDITQLHNRLSSTAPR---------LAEDLSAALNYSQLLKVYR 422 H+ ++++S +F + + + L++ + L E + + LL V R Sbjct: 480 HMLEVIQSNFSLVFTRMVMMETLDALAAISDVDRASANKRFLDEYIPGKVTPELLLSVLR 539 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTL 481 LLTE V +R++ I + + + VR L I L + L Sbjct: 540 MLLTERVPIRNLFLIIETVAEAKPQALPLPRVIELVRQRLAFQIVDRLQDDQGRLPLIQL 599 Query: 482 NNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPP 541 + E T + GG + + P + + +++ + G + Sbjct: 600 STSWEQKFTEYEVTNESGG----SDIALPPEIFGELINSVQAKLNETAQKGIIAAVATSS 655 Query: 542 QLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGA 577 + R L V++Y E+ + + I+G Sbjct: 656 RRRRFLQTVLASKGIRNAVVAYEEINSKSKPYIIGV 691 >UniRef50_B5Y7F7 Flagellar biosynthesis protein FlhA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7F7_COPPD Length = 671 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 168/574 (29%), Positives = 291/574 (50%), Gaps = 14/574 (2%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + LL + ++V+T G +RISEV+ARFTLDAMPG+QMAIDADL+AG I +A+ +R + Sbjct: 108 FVVLLIVQYMVITSGQQRISEVAARFTLDAMPGRQMAIDADLSAGFITPEEARRQRDSLR 167 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+DF+GAMDGAS+FVRG+ +A + +N +GG+ +G+ +A A Y+ + IG Sbjct: 168 KESDFFGAMDGASRFVRGETMASALAAVVNALGGMVVGLL-KGEAAVDALLHYLGVAIGV 226 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMP 186 L I SL LS +AA++V RVS + ++ ++L+A P ++ ++ V +++PG+P Sbjct: 227 ALQIAISSLALSLSAALLVARVSSEQSLGEEITSELMAFPGLVRILGIVLLVTSLLPGVP 286 Query: 187 HLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISL 246 L + LL + G AAE R + SE + + ++ + L Sbjct: 287 KLLLIPLGVLLIWFGRT---PKPAAETALPEQVEAKRLYEQLSEPEAMLGFVG-VDAVEL 342 Query: 247 SLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGI 306 GY+L+ L D G + I +R+ +S+ G +P IRI +N LKP+QY I + G+ Sbjct: 343 EFGYELLPLFDTTSGQDILDSIALLRKNLSEEFGFPIPGIRIHDNLGLKPNQYRIKLRGV 402 Query: 307 KADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSA 366 A E + L+A+ ++ GV +P + + WI + K KA G V+D Sbjct: 403 TAGEGILEMGLLLAMGEGSDLEKVSGVPTKEPVFNLDAKWIPPSDKLKAEAAGLTVVDCG 462 Query: 367 SVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLT 426 +++ TH+ ++++S + DL +I + + + + P + E+L + + V+R LL Sbjct: 463 TIVITHLGEVLKSSLADLITRQNIKDIVDYVGRSHPAVVEELQQVASLGDVEFVFRYLLQ 522 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELTVYTLNNEL 485 E + +RD+V + ++ S ++D R A + + + V TL ++ Sbjct: 523 ERLPVRDVVRVFELITDSLRASRDLREAGELARKACVPYLLETLAEEEGTIKVITLKPDM 582 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E L + G + L + + + E + ++ VL+V P++R Sbjct: 583 ERALIESYQPGSEIGF------ALSGENLRKIIDEIKKAWEMSHSYAENAVLVVHPRIRR 636 Query: 546 LLARYARLF-APGLHVLSYNEVPDELELKIMGAL 578 L L VLSYNE+ D + ++G++ Sbjct: 637 ALWELLSRQGLKELTVLSYNEIMDAKYV-VVGSV 669 >UniRef50_B2TCZ3 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B2TCZ3_BURPP Length = 691 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 158/579 (27%), Positives = 270/579 (46%), Gaps = 22/579 (3%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L I FIVV KGA+R++EVSARFTLD +PG+QM+IDADL GLI ++A R ++ Sbjct: 125 FIVLSAIQFIVVAKGADRVAEVSARFTLDGIPGRQMSIDADLRGGLIGASEAGRLRGELE 184 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E FYG++DGA KFV+GDAIAG+++ +N+ GG+ +GI + +S A Y ++T+GD Sbjct: 185 RETYFYGSLDGAMKFVKGDAIAGLVVALVNIAGGLAVGIAQRGMSLAEALHTYTILTVGD 244 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSD---NGDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLV+QIPSL++S +A ++VTRVS G++ D+ QL A P + A LA +P Sbjct: 245 GLVSQIPSLIVSISAGLLVTRVSSGGVGGNLGGDIFKQLSAHPPAMVMAGTACLALACIP 304 Query: 184 GMPHLPFLLFSALLGFTGW-RMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIE 242 G PH+ F+L + +L M ++ A A + +TR ++ + + Sbjct: 305 GFPHIQFVLAAVVLIGLAVALMRQRAAADRAARPKMPAMTRDGGNYVQRILDDVELGTSS 364 Query: 243 PISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIF 302 P+ + LG A + L ++ +R+ + GV P + + + RL +Y + Sbjct: 365 PLRVRLGS---AACNALNAAELNDQLAQLRRDLIVRLGVPFPGLVLLRDPRLDVDRYIVD 421 Query: 303 INGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQV 362 I+ + + A ++ +E ++G G P W++A A + Sbjct: 422 IDDVPFSGGTLLAGHVLVSGDTERV-TMEGPPGYHPR-AEKSVWVRADSAAGIDDTQLMK 479 Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYR 422 + ++ H+ + P + L N + + L + +Q+ V R Sbjct: 480 SSANGLLCDHLMDVCEKCAPSFVGTQETRFLLNLVGAEFRELVTVAQKVVTTAQIAAVLR 539 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR--KQELTVYT 480 +LL + VS+R++ I +V + H + D R+AL + + E+ Sbjct: 540 SLLEQRVSIRNMRAILEAIVQVPDSERSHDRMVRDARIALAPQLVRSYADLSSWEVHAAV 599 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 L E L ++ G +D + L Q + ++ +++ Sbjct: 600 LEPSWEAELEAQIDLGPDGE----PRCVLDADRLESLQRGFAARNDVVR------LVVTT 649 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVP-DELELKIMGAL 578 LRP L R R VL+ E+P DE ++++ L Sbjct: 650 AVLRPHLERVLRTLGMRTDVLAMEEIPLDEYRVRVIATL 688 >UniRef50_B9JJ70 Type III secretory system inner memberane protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JJ70_AGRRK Length = 644 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 162/576 (28%), Positives = 260/576 (45%), Gaps = 63/576 (10%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL +G I+ AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRSGHISGEAAQKRRSQLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDAIAG++I+A+NL+GG+ IGIF+ LS A Q Y L++IGD Sbjct: 180 RESQFFGAMDGAMRFVKGDAIAGLVIVAVNLLGGLAIGIFQRGLSFSEAAQLYSLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNG--DIAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ AA +VTRVS + ++ ++ QL+ P L A I ++PG Sbjct: 240 GLVSQIPSMLMAVAAGTVVTRVSADESTNLGSEIGRQLIKEPRALGIAAAITLGAGLIPG 299 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P L + ++ + E + + T+ + + +PI Sbjct: 300 FPTTVLWPIGIGLATLALVLVRKRRSQSPELDAATGMAHQQNGTA--TAALDRAKYGDPI 357 Query: 245 SLSLGYKLVALVDKAQ-GNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 +L ++ ++ G L RIR + + GV + + R+ I + Sbjct: 358 VATLSAATMSRLEANNLGGHLDARIRVAARAV----GVAITVPTFNADPRMGEDMIHIQV 413 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + A AD+ Sbjct: 414 ENVPAGLISCKADR---------------------------------------------- 427 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 A +IA + +IVR + +F+ DD TQ L +LA D+ ++ L+ V R Sbjct: 428 -PAELIAQDIVRIVRRHTGSIFSVDDATQWLASLEPRLGKLAIDVRTQVSPMLLVAVIRR 486 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRK-QELTVYTLN 482 LL GV+L + ++ +D LA R AL R I + + L V + + Sbjct: 487 LLDSGVTLSQPRGLLETMLKIEPHEQDPDKLAEKARWALSRQIAFGLLDQRGLLPVLSFS 546 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E E + + + + + K + L + + G DPV+++P + Sbjct: 547 PEWERFVRSYSDASDKTEKEEIS------EKLRRLANETKDALVDANERGFDPVVVMPGE 600 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LR L + V++ E+ ++ ++G + Sbjct: 601 LRFLTQALMIRHNCRVPVVAIEEIDHDITSDVVGMV 636 >UniRef50_Q1NCU5 Putative type III secretion pore protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCU5_9SPHN Length = 654 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 153/584 (26%), Positives = 260/584 (44%), Gaps = 80/584 (13%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIV++KGAER++EV+ARF+LDAMPGKQ++ID+DL +GLI + +A+ RR+ + Sbjct: 122 FLIVTVVQFIVISKGAERVAEVAARFSLDAMPGKQLSIDSDLRSGLIGKDEARERRRTLE 181 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ +G++DGA KFV+GDAIA ++I+ INL+GG+ +G+F + + A A Q + ++TIGD Sbjct: 182 LESKLHGSLDGAMKFVKGDAIASIVIVLINLVGGLAVGVFSHGMEAGEAMQVFSILTIGD 241 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDN---GDIAHDVRNQLLASPSVLYTATGIMFVLAVVP 183 GLVAQIP+L + AA ++VTR +D G + + Q+ + P VL A + ++A++P Sbjct: 242 GLVAQIPALFSAMAAGLLVTRTTDESRDGSLGPAIVQQIGSKPKVLAPAAILCLLMALIP 301 Query: 184 GMPHLPFLLFSALLGFT---------GWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS 234 G P F+ + LG W M K + E+ +TL Sbjct: 302 GFPAAVFIGIAFALGSAAAWQHPVSHAWIMGKAARFDKGEKPLPQTLAAQPEAP------ 355 Query: 235 WETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRL 294 + P+ L + + + L R V + + G+ +P + RL Sbjct: 356 ----RPVRPLVLEIAAPALDAAQAER---LRARFVLVIEAVQARLGLPMPAGEVT--TRL 406 Query: 295 KPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAK 354 P E + P L A + GE+DG Sbjct: 407 LP-------------EGERPRWTLSAYEAPVGSGEVDGP--------------------- 432 Query: 355 ALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNY 414 IA + ++R + T + NR+ + P L +++ A++ Sbjct: 433 ----------FEEAIAPAIEALLRRNAARFLGLQETTTMLNRMGADYPDLVKEVVRAVSS 482 Query: 415 SQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ 474 ++ +V R L E V LR++ + + ++ + +A R+ALRR I P + Sbjct: 483 PRIAEVLRLLAEEEVCLRNLRDVLEAIAEIGQSERNAVPIADRTRVALRRYIAAPHMADG 542 Query: 475 ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 V + LE + + + + + P+ + + A Sbjct: 543 RFPVLVVGGRLERFFRDNLQTVEGVAHLAMP-----PDQARTLIGMIRSETAKCGAR--- 594 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++ LR L + GL +L YNE+ L L ++G L Sbjct: 595 -AIITAYDLRRPLRQLTAGDLFGLPILCYNELTPALPLDVVGTL 637 >UniRef50_B3Q2A2 Type III secretory system protein n=3 Tax=Rhizobium etli RepID=B3Q2A2_RHIE6 Length = 643 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 154/576 (26%), Positives = 252/576 (43%), Gaps = 70/576 (12%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 L + + FIVVTKGAERI+EV ARFTLDAMPGKQ+AID+DL G I AQ RR + Sbjct: 120 FLIVALVQFIVVTKGAERIAEVGARFTLDAMPGKQLAIDSDLRNGHITTEAAQKRRSRLE 179 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ F+GAMDGA +FV+GDA+AG++I+A+NLIGG+ IGIF+ LS A Y L++IGD Sbjct: 180 QESQFFGAMDGAMRFVKGDAVAGLVIVAVNLIGGLAIGIFQKGLSFAEAAHLYTLLSIGD 239 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGD--IAHDVRNQLLASPSVLYTATGIMFVLAVVPG 184 GLV+QIPS+L++ +A I+VTRVSD+G+ + D+ +L P L A + VPG Sbjct: 240 GLVSQIPSILMAVSAGIVVTRVSDDGNGSLGSDIGRELFREPRALAIAAALTICAGFVPG 299 Query: 185 MPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPI 244 P L + + ++ S + +P+ Sbjct: 300 FPTGVLGAIGLCLAGLAFMVHRRRA-------GPAAAGSANAVESANSYPLDRTKYGDPV 352 Query: 245 SLSLGYKLVALVDKAQGNPLTQ-RIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 ++ + +A ++ + + RIR + + GV + + R+ + + Sbjct: 353 IATVAVETLARLEAMRLGEMLDGRIRMAARAV----GVSVTVPTFNADPRMAEDLIHLQV 408 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 + A ++ Sbjct: 409 ENVPAGLVSCGPER---------------------------------------------- 422 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRA 423 +A IA + +IVR +I LF+ DD Q L +LA D++ + + V R Sbjct: 423 -TAEQIADDIVRIVRRHIGALFSVDDAAQWLGSLEPRLGKLAIDVATQVPLMLTVAVVRR 481 Query: 424 LLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLN 482 LL GV+L + V++ + LA R AL + I + + L L Sbjct: 482 LLDSGVTLSQPRGLLEVML-HAGTDHAPDALAEMARAALVKQIAFGLLDRRGLLPALVLP 540 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 E ++ + + G ++ + + + + E+ G DP+++VP + Sbjct: 541 AEWDHFIRSY---DAAGATEKIEIAERLRLLAEKARQALEDANER----GYDPIIIVPGE 593 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 R L + VL+ E+ ++ ++ +G + Sbjct: 594 WRLLTQTLMIHHNCRIPVLAAEEIDRDITIETIGEI 629 >UniRef50_B1T6S7 Type III secretion FHIPEP protein n=2 Tax=Burkholderia RepID=B1T6S7_9BURK Length = 679 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 150/564 (26%), Positives = 252/564 (44%), Gaps = 35/564 (6%) Query: 19 TKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGA 78 KGA+R++EV ARF+LDA+PGKQMAIDADL AG+I++A A RR+ + + FYGAMDGA Sbjct: 135 AKGADRVAEVGARFSLDALPGKQMAIDADLRAGMISKADALERRRQLEQTSQFYGAMDGA 194 Query: 79 SKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLS 138 SKFV+GDAIAG++I +N++GG+ IG + Y ++T+GDGLV+QIPSLL+S Sbjct: 195 SKFVKGDAIAGLLIAIVNVVGGIVIGTAVNGHPLADTARLYTVLTVGDGLVSQIPSLLIS 254 Query: 139 TAAAIIVTRVS---DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSA 195 AA I++TRV+ + D+ +Q+ + P ++ A + A+VPG P L FL Sbjct: 255 FAAGILITRVASIDSATSVGADIGSQIASQPRAIFAAAVVAAGFALVPGFPTLAFLGLGV 314 Query: 196 LLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVAL 255 LL + + + + + + R E V + P+ + L +L Sbjct: 315 LLALLAALIPRLSVMGRSTALARQHWAR--REGVATTVVEGDLGSSVPLRVRLAPELFDQ 372 Query: 256 VDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPA 315 + + + L +R +GV P +++ + L YA+ I+ + + + Sbjct: 373 LKPLELDRLLLALRER----FRESGVPYPGLKLASDRSLTDLGYAVDIDEVAIADGQL-- 426 Query: 316 DKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNK 375 G +P +A A I++ + + Sbjct: 427 ------------ERTQGEGERKRGLSLPSL----PGRAGAETGSQMEIEAM--LVGRIGD 468 Query: 376 IVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIV 435 + + + + L + LS P+L L+ ++ V LL GV +R++ Sbjct: 469 AICAKPWRFLGIQEASYLQDALSRHYPQLVNILAERIHLFVFRDVLVELLRTGVGIRNLR 528 Query: 436 TIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVN 494 IA L S D L + R AL I+ + ++ + + L +LE +L + Sbjct: 529 AIAEGLTKGSAQPNDLDGLVSSARQALSSQISGQWGGVERCIPIAVLAPDLEAVLRQRLI 588 Query: 495 QAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLF 554 + Q + L V + Q + M VL+ LR + R Sbjct: 589 ASGQIKFIDL-QVDEQHAFVQQVIADMQTTWRDHPG----AVLVTGQDLRRSVEALLRGG 643 Query: 555 APGLHVLSYNEVPDELELKIMGAL 578 G+ VL+ E+ DE+ +++ + Sbjct: 644 ERGVTVLAVEEISDEVTYRVLHTI 667 >UniRef50_A2P9C5 VcsV2 n=6 Tax=Vibrio RepID=A2P9C5_VIBCH Length = 628 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 132/582 (22%), Positives = 257/582 (44%), Gaps = 83/582 (14%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI+ QAQ R D+ Sbjct: 117 FVIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLISGEQAQKLRADLG 176 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E +G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + +++ ++TIGD Sbjct: 177 TENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLSESVKRFSVLTIGD 236 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLY----TATGIMFVLAVV 182 GLV+QIPSLLLS A + +TR+ + D + +Q++A + ++ ++ ++ Sbjct: 237 GLVSQIPSLLLSMACGVYLTRIRGSEDESSSFMSQMMAQIRTFWKSLLVVGVVIMLIGLL 296 Query: 183 -PGMPH--LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP 239 P + + LP + ++ W+ ++ A E + ++ Sbjct: 297 NPTLMYVCLPLAVLCIVMALLLWKKNENTAVAVKVEPEGSGVFESLK------------- 343 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGV-RQVISDGNGVLLPEIRIRENFRLKPSQ 298 D + + +R++ V +V G P + ++ + + Sbjct: 344 -------------FVFRDAQYQHLIKKRLKDVEARVWGQALG--EPAVIVQPDLDVD--- 385 Query: 299 YAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNM 358 A++I+G++ + SSE EI ND + + A + Sbjct: 386 IAVYISGVQT--------YQFSQNSSEGIVEIL----NDDVFNL-----HDDLSANLDEI 428 Query: 359 GYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLL 418 ++ +++ + + +N + + L+S + + ++ +A+ +++ Sbjct: 429 --------------ISYFIQTRLVEKYNLQYSSNIVAELASQSEIMKSEIDSAVGLNRVH 474 Query: 419 KVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQELT 477 V + ++ D V+ L+ S V D +R R IT + ++ Sbjct: 475 DVLKQMIRSPEFYLDRVSFFESLIYWSRVESDPRNWLTRIRHQARYEITARLLSNNGQIH 534 Query: 478 VYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD-PV 536 V L+ EL ++ V D L + Q + +++ + + PV Sbjct: 535 VMLLSPELTEEISGYV-----------AGEFEDFERLIEIQRALKSEIKRLIMSHHNRPV 583 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L+V L+ + + L V S+ ++ D + + Sbjct: 584 LVVNDNELNLVKTFVQQVMSTLLVCSHTDIVDNNCISSSEVI 625 >UniRef50_A8DVR9 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVR9_NEMVE Length = 383 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 132/384 (34%), Positives = 213/384 (55%), Gaps = 5/384 (1%) Query: 37 MPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAIN 96 MPG+QM+IDADLN G I+QA+AQ RRK++ EA FYGAMDGASKFV+GDAIAG++IL IN Sbjct: 1 MPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYGAMDGASKFVKGDAIAGIIILLIN 60 Query: 97 LIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAH 156 +IGG+ IG+ ++ L A + Y L+TIGDG+V Q+P+L+++ IIVTR + +G+++ Sbjct: 61 IIGGLVIGVMQHKLPWAQALKTYSLLTIGDGIVTQVPALIIAVGTGIIVTRSASDGNLSQ 120 Query: 157 DVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLF---SALLGFTGWRMSKQPLAAEA 213 +V Q+ + P L + L PG+P LP L+ A + + +R + Sbjct: 121 EVLRQITSFPKTLLLVGAALTGLLFFPGIPALPTLVLIAVVATVAWVVYRNASNSAEDGT 180 Query: 214 EEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQ 273 + + + + +EPI + +G + ALV + G+ L RI R+ Sbjct: 181 APADAQDAAQPADAAQKGEDDPYASLQVEPIEVHVGSEWAALVSQP-GSVLMDRIATFRK 239 Query: 274 VISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGV 333 + G++LP +R ++ RL +Y I I+G+ + AD+L+A+ + + G Sbjct: 240 QHAQDLGLVLPRVRFKDVARLGQDRYEIHIDGVVCGRGEARADRLLAIHPTGRTDGMPGE 299 Query: 334 QGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQL 393 DP YG+P WI+ Q+A A + ++D+ +V TH+ +++R L ++ +L Sbjct: 300 PTRDPTYGLPALWIEEHQRAAATVAKFTLVDAPTVFMTHLTEVLRRESATLLTRAEVDRL 359 Query: 394 HNRLSSTAPRLAEDL-SAALNYSQ 416 NR+ L E+L L+ S Sbjct: 360 LNRVRQNQASLVEELIPTVLSVSD 383 >UniRef50_D1F2C2 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Brucella melitensis bv. 3 str. Ether RepID=D1F2C2_BRUME Length = 512 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 182/396 (45%), Gaps = 6/396 (1%) Query: 184 GMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEP 243 G+P PF L + F G + ++ A + E + E + +++ S + Sbjct: 121 GLPAFPFFLLGGAMAFVGIAVPRRQ-ARQREADAAEAGKKQREAEEQERNSVKASLETNQ 179 Query: 244 ISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFI 303 I L LG +L A + +Q L R+ +R+ + G ++PEI++ ++ L P Y I I Sbjct: 180 IELCLGKQLSARLIASQ-EELAHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKI 238 Query: 304 NGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVI 363 +G ++ +++ + + G + +PA+GM + A GY + Sbjct: 239 HGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRAYSVPETFTADLRREGYMTV 298 Query: 364 DSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVYR 422 D+ SV+ TH+++IVR+ + L +Y D+ L +RL +L ED+ A ++YS L V + Sbjct: 299 DNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHISYSGLQAVLK 358 Query: 423 ALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLN 482 LL E +S+R++ I + + + + ++ VR+ + + I L V L Sbjct: 359 LLLAERISIRNLHLILEAIAEIAPLVRRPEMIVEHVRMRMAQQICGDLSDNGVLNVLRLG 418 Query: 483 NELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQ 542 N + + + + +G V D +DP +L QF + + G+ VL+ P+ Sbjct: 419 NRWDLVFHQSLKRDAKGEIVEFD---IDPRLLEQFGTEASAAIRKHFDNGERFVLVSSPE 475 Query: 543 LRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 RP + L VLS+ E+ +E+K +GA+ Sbjct: 476 ARPYIRMIIERLFATLPVLSHVEIARGVEVKSLGAI 511 >UniRef50_D0I6B6 Type III secretion inner membrane channel protein n=9 Tax=Gammaproteobacteria RepID=D0I6B6_VIBHO Length = 634 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 124/582 (21%), Positives = 236/582 (40%), Gaps = 83/582 (14%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + + + F+VVTKG ER++EV ARF+LDA+PGKQM ID DL +GLI QAQ R D+ Sbjct: 124 FIIITIVQFLVVTKGGERVAEVGARFSLDALPGKQMTIDGDLKSGLITGEQAQKLRADLG 183 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 +E +G++DGA KFV+GDAIAG++I +NL GG+ +GI +++LS + ++ ++T+GD Sbjct: 184 TENKLFGSLDGAMKFVKGDAIAGILISLVNLFGGIYVGINQFDLSLADSVSRFSVLTVGD 243 Query: 127 GLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVV---- 182 GLV+QIPSLLLS A + +TR+ + D + QL+ + + ++ V+ +V Sbjct: 244 GLVSQIPSLLLSMACGVYLTRIKGSDDESTSFMTQLMTQIRTFWKSLLVIGVIIIVLGIA 303 Query: 183 -PGMPH--LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIP 239 P + + +P + L W+ +A + E L Sbjct: 304 NPNLLYICIPLAILCGGLAMWLWKKDDNEVAVSSFEPKGHGLFE---------------- 347 Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQV--ISDGNGVLLPEIRIRENFRLKPS 297 L + +Q L QR ++ G P + + + L Sbjct: 348 -----------SLKFVFRDSQYQSLVQRNVENKEKVLWGQALGS--PAVLV--DPTL-ED 391 Query: 298 QYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALN 357 ++++ I+ + Q + Sbjct: 392 DLKVYVSDIEMYSYK----------------------------HAEAGSVVDIQNDELFV 423 Query: 358 MGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQL 417 V + + I + + + +N + L+ + + ++ +A+ +++ Sbjct: 424 ASADVASNLNNII---SYFIHHRFIEKYNLQYSNNIVAGLAQQSEIMKSEIDSAVGLNRV 480 Query: 418 LKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFV-RKQEL 476 V + ++ D ++ L+ S V D +R R IT + ++ ++ Sbjct: 481 HDVLKQMIRSPEFYLDRISFFEALIYWSRVESDPRNWLTRIRSQARYDITANLLNQEGKV 540 Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 V L EL ++ V G +D + L + + G PV Sbjct: 541 NVVLLTPELTEEISGFV----AGEFDDVDRLIAVQTGLRNEIKRL------LVQYGVKPV 590 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 ++V ++ + + + V S+ ++ + ++ + Sbjct: 591 VVVNENELNVVKAFFQQVMSTVIVCSHADIVNSNCIENSETI 632 >UniRef50_C4PLR3 Flagellar biosynthesis protein (Export) n=10 Tax=Chlamydiaceae RepID=C4PLR3_CHLTZ Length = 605 Score = 332 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 126/563 (22%), Positives = 229/563 (40%), Gaps = 116/563 (20%) Query: 18 VTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDG 77 +TKGAERI+EV ARF+L+A+PGKQM++DAD+ AG I ++A ++ + E+D++ AM+G Sbjct: 150 ITKGAERIAEVRARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEESDYFSAMEG 209 Query: 78 ASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLL 137 +FV+GDAI ++L +N++ + +G + L +GD LV+QIP+LL Sbjct: 210 VFRFVKGDAIMSWVLLGVNILAALFLGRATH-------VGDLWLTVLGDALVSQIPALLT 262 Query: 138 STAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALL 197 S AAA ++ +V + +A + + S I+ +A +PG P L FS LL Sbjct: 263 SCAAATLIAKVGEKESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKALILGFSVLL 322 Query: 198 GFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVD 257 F G+ K P + E E + L D Sbjct: 323 -FLGY---KNPSSGETLLFQKE-------------------------RVEF-----VLPD 348 Query: 258 KAQGNPLTQRIRGVRQVISDGNGVLLP-EIRIRENFRLKPSQYAIFINGIKADEADIPAD 316 + GNP + R I GV+ P I +R + S + +G + ++ Sbjct: 349 EGVGNPA-NLYKDARNQIYQELGVVFPEAIVVR---HVTGSSPRLIFSGQEVALRELSCP 404 Query: 317 KLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKI 376 ++ + ++ P + T + Sbjct: 405 AIL-----------ESIRQLAPE------------------------TISERFVTRLVDE 429 Query: 377 VRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVT 436 R + + ++I L ++ + L+ + RAL+ E VSL Sbjct: 430 FREHA--FLSIEEI-----------------LPLKISENSLIFLLRALVRERVSLHLFPK 470 Query: 437 IATVLVASSTVTKDHILLAADVRLALRRSI-THPFVRKQELTVYTLNNELENLLTNVVNQ 495 I + + +K+ L VR L + I + R+ L V T+++ +E + + Sbjct: 471 ILEAIDVYGSQSKNSQELVECVRKYLGKQIGLSLWNRQDVLEVITIDSLVEQFVRDS--- 527 Query: 496 AQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFA 555 V ++ + + + + G ++ + R L R + Sbjct: 528 ----------QEKVVLDLNEKVVAQVKHLLR--VGEGNFRAIVTGSETRKELKRIVDPYF 575 Query: 556 PGLHVLSYNEVPDELELKIMGAL 578 P L VL+++E+P+E+ + ++GA+ Sbjct: 576 PDLLVLAHSELPEEIPITLLGAV 598 >UniRef50_A3ZLT3 Flagella-associated protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLT3_9PLAN Length = 489 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 12/357 (3%) Query: 218 LETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISD 277 E + + W + ++ +SL +G L+++V + R+ VR ++D Sbjct: 97 AEPEEKVEASLPDSTEPWRSYLAMDRLSLEVGQSLISIV-APESKDFFDRMTAVRCQLAD 155 Query: 278 GNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGND 337 G+++P IR+R+N +L ++Y I I+ + A K +AL +DG G D Sbjct: 156 SLGIVVPNIRMRDNRQLSDNEYRILIDENELARARFGPGKYIALDMGTATETLDGSPGVD 215 Query: 338 PAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRL 397 P +G P WI+A Q+ +A GY VI+ + ++ TH+ + +R + ++ DD+ +L Sbjct: 216 PTFGGPGIWIRADQQHEAEKAGYLVIEPSMLLVTHLQETLRRHSHEMLTLDDVRRLIEMQ 275 Query: 398 SSTAPRLAEDLSA-ALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAA 456 E+L A L+ S + V LL EGVS+++ + LV T D LL A Sbjct: 276 RDDQAAEVEELRASPLSLSTIHAVLVRLLEEGVSIKNFSRVLETLVRHGARTGDVELLVA 335 Query: 457 DVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLN 515 VR+ L R I ++ + L +LE+ L +N A G K + Sbjct: 336 AVRVRLGRQICQRYLDRDGRVHAIGLEPDLEDRLLE-LNDAGAGRKARPW--------VE 386 Query: 516 QFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELEL 572 + + +Q++ + L+ LR L R P + VLS+ EVP E+ Sbjct: 387 RLIDNLADSFQQLEEQQQPTALVTSIDLRCNLWRMITAQLPRVAVLSFAEVPRNTEI 443 >UniRef50_B1TCM3 Type III secretion FHIPEP protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCM3_9BURK Length = 349 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 8/333 (2%) Query: 248 LGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIK 307 G L A Q +RI R +D +G + P + R++ +L P +Y + + G + Sbjct: 2 FGGALTAAWQPMQA-VFAERIATFRDQYADESGFVAPAVVFRDSTQLPPDEYQVRLFGTR 60 Query: 308 ADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSAS 367 +A + +A+ + G + G +PA+G+P WI Q+ +A +G+ +D + Sbjct: 61 FGQAATYPGRTLAIHPAGVTGALPGAATQEPAFGLPAVWIDDDQRDRAKALGHTCVDPVT 120 Query: 368 VIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLT 426 + THV ++++++ LF + L + + + P L ++ + L + +V + LL Sbjct: 121 ALLTHVTELIKTHAARLFGRAETIALLDGVRARQPGLVDEVVPNVLAVGDVQQVLQGLLA 180 Query: 427 EGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVRKQ-ELTVYTLNNEL 485 E V +RDI I L + KD L VR L +I ++ L V TL+ L Sbjct: 181 EQVPIRDIDLIVQTLADVARHEKDPARLVEAVRQRLGHAICQRAQGERDTLAVLTLDPAL 240 Query: 486 ENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRP 545 E + + A G +L DP + F + E M G P LL P +R Sbjct: 241 EAEIARNLAGADGHGTHVL-----DPRLAEPFLGRLLAHTETMMRQGHTPALLCRPDIRR 295 Query: 546 LLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 L ++R AP L VLS NEVPD + L+ + Sbjct: 296 ALKTFSRRVAPRLVVLSINEVPDAIPLRAFATV 328 >UniRef50_Q8GAT5 Invasion protein (Fragment) n=1 Tax=primary endosymbiont of Sitophilus zeamais RepID=Q8GAT5_9ENTR Length = 340 Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 9/346 (2%) Query: 42 MAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGV 101 M+IDADL AG++++ + RR+ + +E+ YGA+DGA KF++GDAIAG++I+ +NLIGG+ Sbjct: 1 MSIDADLKAGVLDEDGVKKRREVLEAESQLYGALDGAMKFIKGDAIAGIIIIFVNLIGGI 60 Query: 102 CIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRV--SDNGDIAHDVR 159 +G+ ++ + A Y ++IGD LVAQIP+LL+S + IVTRV + N ++ + Sbjct: 61 SVGMVQHGMELSEALTVYTHLSIGDALVAQIPALLISISGGFIVTRVNNNKNNNLGSKII 120 Query: 160 NQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWR-MSKQPLAAEAEEKSL 218 L A+ S L + + +PG P F++ SALL ++ + ++ E Sbjct: 121 TDLFANQSTLMVTACLALAMGFLPGFPLPVFMVLSALLIAIYFKDKWRNRHKNKSGESHR 180 Query: 219 ETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDG 278 E ++ + + IP P+ ++ K + + L R++ + Sbjct: 181 EKGADDEAQSEAVTIDGDIIPETLPLMITFNETFKP---KLEQHNLASRLK---KTFFIE 234 Query: 279 NGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDP 338 GV LPEI I + + I IN I + + L + E +D + Sbjct: 235 YGVRLPEITIGYAPKSVCASMNIAINEIPVADYMLIPGMHKILINGEELKMLDNSVESIN 294 Query: 339 AYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDL 384 W+ + A MGY + ++ ++ I + Sbjct: 295 TPQGVSYWLPEEKADNAHKMGYITRSAIDEFYFCISTLLTHNISEF 340 >UniRef50_C5U3P7 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P7_DESVU Length = 398 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 86/174 (49%), Positives = 121/174 (69%), Gaps = 1/174 (0%) Query: 7 LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVA 66 + L + F+V+ KGAER++EV ARFTLDAMPGKQM+IDAD+ AG+I+ +AQ RR V+ Sbjct: 123 FVILTIVQFLVIAKGAERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVS 182 Query: 67 SEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGD 126 E+ YGAMDGA KFV+GD+IAGM++ +N++GG IGI ++ ++A A Y ++TIGD Sbjct: 183 QESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGD 242 Query: 127 GLVAQIPSLLLSTAAAIIVTRVS-DNGDIAHDVRNQLLASPSVLYTATGIMFVL 179 GLV+QIPSLL+S +A I++TR G++ + Q+ P L A G L Sbjct: 243 GLVSQIPSLLVSISAGILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGAGLSL 296 >UniRef50_C5U3P6 Type III secretion FHIPEP protein n=1 Tax=Desulfovibrio vulgaris RCH1 RepID=C5U3P6_DESVU Length = 298 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 10/302 (3%) Query: 281 VLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAY 340 + P I +R N L Y + +N I + + + E + GV + Sbjct: 1 MPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENL-AMMGVAVREGER 59 Query: 341 GMPVT---WIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRL 397 +P W+ Q G + A ++A H++ ++ + + L +R+ Sbjct: 60 FLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEAKYLLDRM 119 Query: 398 SSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKDHILLAAD 457 AP L +++ L ++ ++++ L+ E VS+RD+ +I L+ S KD ++L Sbjct: 120 EERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKDTVMLTEY 179 Query: 458 VRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQ 516 VR AL+R I++ R Q L L+ +E + V Q G + L +P + + Sbjct: 180 VRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLAL-----EPAVTER 234 Query: 517 FQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMG 576 F + + PV++ +R + R L V+SY E+ E+ ++ + Sbjct: 235 FMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQPVN 294 Query: 577 AL 578 + Sbjct: 295 RI 296 >UniRef50_Q1CE51 Secretion system apparatus protein n=2 Tax=Yersinia pestis RepID=Q1CE51_YERPN Length = 348 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 140/316 (44%), Gaps = 13/316 (4%) Query: 264 LTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPS 323 L + I G+R + GV LPE+ IR + L + ++ + + E +P D L+ Sbjct: 34 LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP 93 Query: 324 SETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD 383 + + V G A W+ A Q +A +G ++ I T + ++ Y + Sbjct: 94 CSSLVTNNQVLG---AKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAE 150 Query: 384 LFNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVA 443 + L + + L ++L + ++ ++ + L+ E +S+RD+ TI LV Sbjct: 151 FIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVV 210 Query: 444 SSTVTKDHILLAADVRLALRRSITHPFVRKQE-LTVYTLNNELENLLTNVVNQAQQGGKV 502 + KD ++L VR+ALRR + F + ++V L + +E+L+ + + Q G Sbjct: 211 WAPKEKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYS 270 Query: 503 MLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLS 562 L+ +LN+ ++ + +D VLL +R + + L VLS Sbjct: 271 ALEERQ-SLLILNKIKNAFAE--------NQDAVLLTTLDVRRFVRKIIERDLFVLPVLS 321 Query: 563 YNEVPDELELKIMGAL 578 + E+ DE+ LK+ G + Sbjct: 322 WQELGDEMNLKVAGTI 337 >UniRef50_A6G3X4 Flagellar biosynthesis protein FlhA n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3X4_9DELT Length = 602 Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 131/582 (22%), Positives = 218/582 (37%), Gaps = 105/582 (18%) Query: 1 MLSRSD-------LLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLI 53 ++ R D + I ++V+ +GAER++EV+ARFTLD++PG+Q+AID + G I Sbjct: 95 LVVRGDLLVGAVMFGVITAIQYLVIARGAERVAEVAARFTLDSLPGEQVAIDRERARGQI 154 Query: 54 NQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSAD 113 +A+ RR ++ ADF+G MDG + V+GDA+ G++I AINL+GG IG+ + Sbjct: 155 GADEARARRAELGERADFFGRMDGVMRIVKGDALVGLVITAINLVGGAAIGMRQ-GAGLV 213 Query: 114 AAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTAT 173 + Y + +GDGL+AQ+P++LL+ AAA++V+RV L +P +L AT Sbjct: 214 ESLGVYGRLAVGDGLLAQLPAMLLALAAAMLVSRVDRRDAARSPRLFDWLEAPMLLAPAT 273 Query: 174 GIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQV 233 ++ VLA VPGMP L F L +++ P AA+ Sbjct: 274 -LLLVLAAVPGMPTLAFGTTGVGLLLVALYLTRAPAAAKK-------------------- 312 Query: 234 SWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFR 293 + EP+ + + L + L + +RQ S + P + + Sbjct: 313 ----LASPEPLRVGVPASLRPEL----REDLEGALPALRQRCSATLNLPFPPLVLELRPE 364 Query: 294 LKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKA 353 L +AL + + ++ + A Sbjct: 365 LPERS--------------------LALDLEDRSLARETIEAS-----------AADDPD 393 Query: 354 KALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAALN 413 L G+ + L D I R P + Sbjct: 394 AWLLAGF--------------HALTRGASALLELDAIEGAIERERRRRPAVVRRAMRCAE 439 Query: 414 YSQLLKVYRALLTEGVSLRDIVTIATVLVA----SSTVTKDHILLAADVRLALR----RS 465 LL + RA + E V L + + T L + R AL R Sbjct: 440 SIDLLHIARAFVRERVPLPSVTALLTALAEERCFHDPNERS--RWPELAREALADRWLRE 497 Query: 466 ITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVK 525 + + + +LE+LL +V L +V Sbjct: 498 LHAGVCELGDPRWLRASPDLEDLLVARWEPGANRPRVHLSP------------KERQRVL 545 Query: 526 EQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVP 567 +++ G ++L + RP LA P + V + E+ Sbjct: 546 ARVQGEG-PAIVLCSARARPALAALMTGLRPHVPVFALGELA 586 >UniRef50_UPI000190D087 possible secretory protein (associated with virulence) n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190D087 Length = 290 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 117/291 (40%), Gaps = 3/291 (1%) Query: 210 AAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQR-- 267 A + + ++ ++ S I ++ +S L+ LV K++ L + Sbjct: 1 KRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTE-TVPLILLVPKSRREDLEKAQL 59 Query: 268 IRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETY 327 +R GV LPE+ +R+ L + + IN I+ ++ + D + + S+ Sbjct: 60 AERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEV 119 Query: 328 GEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNY 387 W+ + K +GY + ++ + + + + + F Sbjct: 120 VSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGI 179 Query: 388 DDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTV 447 + + ++L + P L +++ ++ +V + LL+E VS+R++ I L + Sbjct: 180 QETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPR 239 Query: 448 TKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQ 498 KD I L +R A+ R I H F EL ++ E+E+++ + Q Sbjct: 240 EKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSG 290 >UniRef50_Q9Z8I0 Flagellar Secretion Protein n=2 Tax=Chlamydophila pneumoniae RepID=Q9Z8I0_CHLPN Length = 582 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 129/248 (52%), Gaps = 6/248 (2%) Query: 8 LTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVAS 67 L L +NF++V+KG+ERI+EV +RF L+A+P KQMA+D+DL +G + + ++ + Sbjct: 113 LLLFFVNFLMVSKGSERIAEVRSRFFLEALPAKQMALDSDLVSGRASYKAVKKQKNALIE 172 Query: 68 EADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDG 127 E DF+ AM+G +FV+GDAI ++L +N++ C+ ++ A +Q +GD Sbjct: 173 EGDFFSAMEGVFRFVKGDAIISCILLLVNVVSVTCL-----YYTSGYALEQMWFTVLGDA 227 Query: 128 LVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPH 187 LV+Q+P+LL S AAA +++++ + + + + ++F L +P P Sbjct: 228 LVSQVPALLTSCAAATLISKIDKEESLLNYLFEYYKQLRQHFRVVSLLIFSLCCIPSSPK 287 Query: 188 LPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLS 247 P +L ++LL + +R + E++ + + E Q E + Sbjct: 288 FPIVLLASLL-WLAYRKEEPASEDSCIERAFSYVEGACPKEQESQFYQVYRAASEEVFED 346 Query: 248 LGYKLVAL 255 LG +L L Sbjct: 347 LGVRLPVL 354 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 16/205 (7%) Query: 376 IVRSYIPDLFNYDDITQLHNRLSSTAPRLAED-LSAALNYSQLLKVYRALLTEGVSLRDI 434 +R+ + N + + + ED + ++ S L+ + R L+ E VSL+ Sbjct: 385 FLRNIAHEALNAEVVQKYLEESERVFGIAVEDIVPKKISLSSLVVLSRLLVRERVSLKLF 444 Query: 435 VTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYTLNNELENLLTNVV 493 I + +LA VR +L I KQ L V T++ +E L+ + Sbjct: 445 PKILEAVAVYQNSGDSLEILAEKVRKSLGYWIGRSLWDQKQTLEVITIDFHVEELINSSY 504 Query: 494 NQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARL 553 +++ +P M + + E+ ++ + R + + Sbjct: 505 SKS-------------NPVMQENVIRRVDSLLERSVFKDFRA-IVTSCETRFEMKKMLDP 550 Query: 554 FAPGLHVLSYNEVPDELELKIMGAL 578 P L VLS++E+P E+ + +G + Sbjct: 551 HFPDLLVLSHDELPKEIPISFLGIV 575 >UniRef50_O52255 FlhA (Fragment) n=1 Tax=Pseudomonas putida RepID=O52255_PSEPU Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 8/218 (3%) Query: 363 IDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDL-SAALNYSQLLKVY 421 ++ ++ ++++V + DL + LS +P+LAE+L ++ S LLKV Sbjct: 8 VEPDALAQLPLDELVACHECDLLLRKPV---LQVLSKASPKLAEELVPGVISLSGLLKVL 64 Query: 422 RALLTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRLALRRSITHPFVR-KQELTVYT 480 +ALL+E V +RDI +IA + ++ ++D L A VR+ L R+I V + EL V T Sbjct: 65 QALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAVVRVGLCRAIVQSIVGVESELPVIT 124 Query: 481 LNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVP 540 L LE +L N + +A QG + D V ++P+M + Q ++ + ++ + G+ +LLV Sbjct: 125 LEPRLEQILLNSLQRAGQGQE---DGVLLEPSMAEKLQPSLIEAAQRQEMQGQPAILLVA 181 Query: 541 PQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 +R +L+R+ RL P LHVL+Y E+PD ++ I+ + Sbjct: 182 GPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIVATV 219 >UniRef50_D1ZYL5 Whole genome shotgun sequence assembly, contig_4154 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZYL5_SORMA Length = 168 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 15/176 (8%) Query: 110 LSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRNQLLASPSVL 169 + A + L+TIGDG+ Q+P+L++S A IIVTR + + +++ +V QL + P + Sbjct: 1 MEWSEALGHFTLLTIGDGIATQLPALIISIATGIIVTRSASDRELSTEVFRQLGSVPRIP 60 Query: 170 YTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETS 229 ++ L ++PGMP P ++ + F WR ++ A A E E + T + Sbjct: 61 LIVAAVLAALLLLPGMPKWPIVVIG-TIAFVAWRRIRKAAAEAAAEPVDEEVAAESTASP 119 Query: 230 EQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPE 285 P+ + LG L +G + RI G+R+V + G+ P Sbjct: 120 -------------PLEIRLGEALSGAW-AGEGALVMDRIAGLRRVHEEQFGLPFPP 161 >UniRef50_Q58FD6 SsaV (Fragment) n=1 Tax=Salmonella enterica subsp. enterica serovar Gallinarum RepID=Q58FD6_SALGL Length = 132 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 15/142 (10%) Query: 113 DAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDN--GDIAHDVRNQLLASPSVLY 170 A Y +++IGDGL QIPSLL+S +A IIVTRV ++A ++ +Q+ P L Sbjct: 1 SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI 60 Query: 171 TATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSE 230 ++ +LA++PG P + FSALL + ++ E Sbjct: 61 LTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS-------------ANGVE 107 Query: 231 QQVSWETIPLIEPISLSLGYKL 252 +P P+ L L L Sbjct: 108 APEKDSMVPGACPLILRLSPTL 129 >UniRef50_A9KQE5 Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KQE5_CLOPH Length = 266 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 90/257 (35%), Gaps = 48/257 (18%) Query: 200 TGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKA 259 +++SK + E L T +++ + I EPI+L +G V + K Sbjct: 49 LLYQLSKVLSLSMDELLDLPTSLTESDNDKDKERLFRAIL-SEPITLKVGCGFVDYLMKE 107 Query: 260 QGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLM 319 +++ VR ++ +G LLP +RI ++ L + I E + Sbjct: 108 NQQGF-PKLQQVRINMAKESGYLLPTVRILDDITLDNHCFQILFYDKVVYEQN------- 159 Query: 320 ALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKIVRS 379 L S + I +N + Sbjct: 160 NLNPSSSEYP--------------------------------------EIFEQLNLTCTA 181 Query: 380 YIPDLFNYDDITQLHNRLSSTAPRLAE-DLSAALNYSQLLKVYRALLTEGVSLRDIVTIA 438 + L + + L + LS P L + + L+Y+Q+ V ++L+ S+R++ I Sbjct: 182 HYEKLLHRQIVKDLIDNLSKLYPVLVDGYIPDKLSYAQIQFVLKSLIEHKKSIRNLCEII 241 Query: 439 TVLVASSTVTKDHILLA 455 L + + KD + ++ Sbjct: 242 EYLEDNLVLGKDLVSIS 258 >UniRef50_A6GSW7 Flagellar biosynthesis protein FlhA (Fragment) n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW7_9BURK Length = 106 Score = 81.8 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 475 ELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKD 534 +L V + +LE ++T+ A Q D V +DPN+ + + G+ Sbjct: 5 DLNVLVMEPKLEQMITHAHTAAGQ------DQVGIDPNLAENLARQTADAAGRQEQLGQS 58 Query: 535 PVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 PVLLVP LR +AR + AP L VLS++E+P+ +++ + Sbjct: 59 PVLLVPDALRLSMARLLKRAAPNLRVLSHSEIPENRTIRVAQVV 102 >UniRef50_D1ZYM6 Whole genome shotgun sequence assembly, contig_4196 n=1 Tax=Sordaria macrospora RepID=D1ZYM6_SORMA Length = 102 Score = 81.0 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 318 LMALPSSETYGE-IDGVQGNDPAYGMPVTWIQAAQKAKALNMGYQVIDSASVIATHVNKI 376 ++AL + + G ++G DP +G+ WIQ A GY V+D+ +VIATH+N + Sbjct: 7 MLALDTGQAVGGFLEGKTAKDPTFGLDAIWIQPGDADAATGAGYLVVDAGTVIATHLNHV 66 Query: 377 VRSYIPDLFNYDDITQLHNRLSS 399 + +L D++ L + L + Sbjct: 67 LTVNATELLGPDEVQALLDGLKA 89 >UniRef50_Q5P877 Flagellar biosynthesis protein flha n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P877_AZOSE Length = 206 Score = 71.0 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%) Query: 477 TVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPV 536 V L+ LE +L V G + ++P++ + +V ++ + G PV Sbjct: 106 KVMALDPSLERILGQAV------GAGGGEGGVIEPSLADGLLRHAAEVAQRQEDIGLPPV 159 Query: 537 LLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGAL 578 LLVPPQLR LL+R+ R P L V++ +EVP+ +++ + Sbjct: 160 LLVPPQLRWLLSRFLRRAVPSLKVIANSEVPETRTIRVTAMV 201 >UniRef50_UPI000185465C flagellar biosynthesis protein FlhA n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI000185465C Length = 72 Score = 63.3 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 146 TRVS--DNGDIAHDVRNQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWR 203 TR + + D A + QL L I+ + A +PG+P L F W Sbjct: 1 TRTTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWL 60 Query: 204 MSKQPLAA 211 +S++ Sbjct: 61 ISREGKDG 68 >UniRef50_UPI000190A6ED invasion protein InvA n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190A6ED Length = 85 Score = 55.2 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 163 LASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLT 222 + +P VL + + +PG P F++ S +L + + A + Sbjct: 1 MNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFR-EAKRSAAKPKTSKGE 59 Query: 223 RTITETSEQQVSWETIPLIEPISLS 247 + ++ ++ S I ++ +S Sbjct: 60 QPLSIEEKEGSSLGLIGDLDKVSTE 84 >UniRef50_Q79DB4 HrpJ2 (Fragment) n=1 Tax=Pseudomonas syringae RepID=Q79DB4_PSESX Length = 63 Score = 51.0 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 533 KDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGA 577 + VLLV LR L R + VLS+ E+ + ++K+MG Sbjct: 3 EQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVMGR 47 >UniRef50_B7UR42 Predicted portal protein n=71 Tax=root RepID=B7UR42_ECO27 Length = 861 Score = 43.7 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 100/344 (29%), Gaps = 53/344 (15%) Query: 240 LIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQY 299 LIE I L L L +++ +T +R + G + +N L P++ Sbjct: 324 LIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAV------KNTLLTPNEA 377 Query: 300 AIFINGIKADEADIPADKLMALPSSETYGEIDGVQGNDPAYGMPVTWIQAAQKAKALNMG 359 N D L + + + + + + + A + Sbjct: 378 RKRENLPPLAGG----DALYLQQQNYSLEALSRRDAREDPFSSAGKTVSSQLPDGASDGN 433 Query: 360 YQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSTAPRLAEDLSAAL------- 412 + ++ V + R + + + L + DL Sbjct: 434 KAISETE---HDAVKAMFRGDTEKMTERE--LSIIRALGEEFSTVLADLQRTFEGKMASQ 488 Query: 413 ------NYSQLLKVYRALLTEGVSLRDIVTIATVLVASS---------TVTKDHILLAAD 457 + L V + V++ ++ + +V + D +L Sbjct: 489 AQAFEEKLTSLSAVLQK----HVTVDEVRPVLQAMVDDAVGAIPVPRDGRDYDPDVLQQA 544 Query: 458 VRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQF 517 V A+ I P + LT + LE ++ V+ V D DP +L + Sbjct: 545 VNDAVAN-IPQP-ADGKSLTPDDVRPMLEQMVKEAVSHIP----VPRDGRDYDPEVLQKA 598 Query: 518 Q-STMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHV 560 + + + L P +RP+L + + + V Sbjct: 599 VNDAVANIPQPADGKS-----LTPDDVRPMLEQMVKEAVSHIPV 637 >UniRef50_Q08UM6 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08UM6_STIAU Length = 178 Score = 41.4 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 15/140 (10%) Query: 175 IMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKQPLAAEAEEKSLETLTRTITETSEQQVS 234 + VLA+V G+P L G + + K+ A + + + E +++ Sbjct: 16 LALVLALVAGVPLL------GGAGVFLYLLWKRAQAPDPDNALRVAAGGNTAPSEEARIN 69 Query: 235 WETIPLIEPI-SLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFR 293 + + G L A A+ + + + G P +R Sbjct: 70 VLALCDAVQMYRAEHGTFLSAGPTPAEVPRGGKAVSFPHDEAFEQLGFA-PGTAVRF--- 125 Query: 294 LKPSQYAIFINGIKADEADI 313 QY + I EA++ Sbjct: 126 ----QYQVAIQENPVGEAEV 141 >UniRef50_C0ZLC4 Putative uncharacterized protein n=2 Tax=Rhodococcus erythropolis RepID=C0ZLC4_RHOE4 Length = 446 Score = 41.4 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 38/287 (13%) Query: 182 VPGMPHLPF-------LLFS------------ALLGFTGWRMSKQPLAAEAEEKSLETLT 222 +PG P +PF A L + G+ + + Sbjct: 117 LPGFPFVPFTSALEIRWALGHTMDEKVPTYVPAALTYLGYYTGTRRGEPPIASLQYAGIA 176 Query: 223 RTITETSEQQVSWETIPLIEPISL----SLGYKLVALVDKA------QGNPLTQRIRGVR 272 + + + + + +L + L D Q L + R VR Sbjct: 177 AGRSRDEAEMSALLELLERDATALWWCGDRSQPAIELADWERLPAHRQLGDLESQTRSVR 236 Query: 273 QVISDG-NGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEID 331 ++ G+ + + IR++ R + ++A + + L + + D Sbjct: 237 VLLLPSPFGIPVAAVWIRDDRRGLVALGTACRPTVEAAVSKALVEAYAVLAITIDLADPD 296 Query: 332 GVQGNDPAYG-MPVTW-----IQAAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPD-L 384 G A G +P + + V+D +V +++ ++ + L Sbjct: 297 GPTWRSVADGTLPAHLYKPFRADRRYRDEFDAQWKDVVDLPTVAQLYLDPVMAHLAEEHL 356 Query: 385 FNYDDITQLHNRLSSTAPRLAEDLSAALNYSQLLKVYRALLTEGVSL 431 F+Y + + + P L A L + L T +S+ Sbjct: 357 FDYTETRS-VSEVPDEDPVNLASLVALLTSRGYQPISVDLTTRDISI 402 >UniRef50_B9ZQD6 ParB-like partition protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQD6_9GAMM Length = 368 Score = 41.4 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 23/149 (15%) Query: 410 AALNYSQLLKVYRAL---------LTEGVSLRDIVTIATVLVASSTVTKDHILLAADVRL 460 + V R L +TE + +++ I + + KD + D Sbjct: 95 KLAGLESIPAVIRDLTDSEAARVQMTENIQRKNLTQIEEAI----QIKKDLEQMGGDTEA 150 Query: 461 ALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQST 520 LRR + + L + L E L+ + + P + F Sbjct: 151 LLRRYNKNQPWLIKRLALVDLGPHTERLIRENLTSDIEVIYGAKGLETKAPELAESFVKA 210 Query: 521 MPQVKEQMKAAGKDPVLLVPPQLRPLLAR 549 + Q ++ P LR LLA Sbjct: 211 VAQSAQEQ----------TAPNLRILLAN 229 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.157 0.453 Lambda K H 0.267 0.0482 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,887,850,487 Number of Sequences: 3077464 Number of extensions: 205308340 Number of successful extensions: 604533 Number of sequences better than 1.0e-01: 141 Number of HSP's better than 0.1 without gapping: 350 Number of HSP's successfully gapped in prelim test: 39 Number of HSP's that attempted gapping in prelim test: 602785 Number of HSP's gapped (non-prelim): 496 length of query: 579 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 445 effective length of database: 628,016,180 effective search space: 279467200100 effective search space used: 279467200100 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 96 (41.4 bits)