BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (444 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 906 0.0 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 753 0.0 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 425 e-117 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 417 e-115 UniRef50_A0KQD3 Transcriptional regulatory protein ZraR n=2 Tax=... 417 e-115 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 389 e-106 UniRef50_Q2NS23 Putative two-component transcriptional regulator... 374 e-102 UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-... 373 e-102 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 369 e-100 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 369 e-100 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 357 4e-97 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 357 6e-97 UniRef50_D2L101 Two component, sigma54 specific, transcriptional... 355 2e-96 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 355 3e-96 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 349 1e-94 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 349 1e-94 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 347 5e-94 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 346 8e-94 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 344 3e-93 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 343 1e-92 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 342 2e-92 UniRef50_Q314G6 Two component transcriptional regulator, Fis fam... 341 4e-92 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 341 4e-92 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 340 8e-92 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 339 1e-91 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 338 2e-91 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 338 3e-91 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 337 4e-91 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 335 3e-90 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 333 9e-90 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_C6NTB3 Two-component response regulator PilR n=1 Tax=Ac... 332 2e-89 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional... 331 3e-89 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 331 3e-89 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 330 5e-89 UniRef50_Q094U7 Helix-turn-helix, Fis-type n=1 Tax=Stigmatella a... 330 7e-89 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 330 7e-89 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 328 2e-88 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 328 3e-88 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 328 3e-88 UniRef50_Q6ARB9 Probable two-component system response regulator... 327 7e-88 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 327 8e-88 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 326 9e-88 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 326 1e-87 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 326 1e-87 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 325 2e-87 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 325 2e-87 UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC ... 324 4e-87 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 323 6e-87 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 323 7e-87 UniRef50_A3ERY0 Putative two component, sigma54 specific, transc... 323 1e-86 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 322 1e-86 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 320 5e-86 UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional... 320 6e-86 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 320 9e-86 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 319 1e-85 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 319 1e-85 UniRef50_P13632 C4-dicarboxylate transport transcriptional regul... 319 1e-85 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 318 2e-85 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 318 2e-85 UniRef50_B8DRM2 Two component, sigma54 specific, transcriptional... 318 2e-85 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 318 2e-85 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 318 3e-85 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 317 4e-85 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 317 6e-85 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 317 6e-85 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 317 7e-85 UniRef50_A9FLX9 Family membership n=6 Tax=Myxococcales RepID=A9F... 317 8e-85 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 316 9e-85 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 316 1e-84 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 316 1e-84 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 316 1e-84 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 316 1e-84 UniRef50_B5ELA2 Two component, sigma54 specific, transcriptional... 315 1e-84 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 315 2e-84 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 314 4e-84 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 314 4e-84 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 314 5e-84 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 313 6e-84 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 313 6e-84 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 312 1e-83 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 312 2e-83 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 312 2e-83 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 312 2e-83 UniRef50_B9JNH6 Two-component response regulator protein regulat... 312 2e-83 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 311 2e-83 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 311 2e-83 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 311 3e-83 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 311 3e-83 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 311 4e-83 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 311 4e-83 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 311 4e-83 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 310 7e-83 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 310 7e-83 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 310 7e-83 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 310 7e-83 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 310 8e-83 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 310 8e-83 UniRef50_C5V657 Two component, sigma54 specific, transcriptional... 310 9e-83 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 309 1e-82 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 309 1e-82 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 309 1e-82 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 309 1e-82 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 309 1e-82 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 309 2e-82 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 309 2e-82 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 308 2e-82 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 308 2e-82 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 308 2e-82 UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional... 308 3e-82 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 308 3e-82 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 308 3e-82 UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional... 308 3e-82 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 308 4e-82 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 307 5e-82 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 307 5e-82 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 307 6e-82 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 307 6e-82 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 307 7e-82 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 306 7e-82 UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Me... 306 8e-82 UniRef50_Q1NUE1 Helix-turn-helix, Fis-type n=4 Tax=Deltaproteoba... 306 8e-82 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 306 9e-82 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 306 1e-81 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 306 1e-81 UniRef50_P10046 C4-dicarboxylate transport transcriptional regul... 306 1e-81 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 306 1e-81 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 306 1e-81 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 306 1e-81 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 306 1e-81 UniRef50_Q6MI19 Probable transcriptional regulatory protein zraR... 305 2e-81 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 305 2e-81 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 305 2e-81 UniRef50_A6DJF3 Sigma 54-dependent transcriptional activator con... 305 2e-81 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 305 2e-81 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 305 2e-81 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 305 3e-81 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 305 3e-81 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 304 4e-81 UniRef50_Q7UTY7 Acetoacetate metabolism regulatory protein atoC ... 304 5e-81 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 304 5e-81 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 304 6e-81 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 303 6e-81 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 303 7e-81 UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis fam... 303 7e-81 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 303 7e-81 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 303 8e-81 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 303 9e-81 UniRef50_Q5P0J0 Sigma-54 dependent DNA-binding response regulato... 303 1e-80 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 302 1e-80 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 302 2e-80 UniRef50_Q0EZM6 Helix-turn-helix, Fis-type n=1 Tax=Mariprofundus... 302 2e-80 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 302 2e-80 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 302 2e-80 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 301 2e-80 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 301 2e-80 UniRef50_Q1CVM8 Sigma-54 dependent DNA-binding response regulato... 301 2e-80 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 301 2e-80 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 301 2e-80 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 301 2e-80 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 301 3e-80 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 301 3e-80 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 301 3e-80 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 301 4e-80 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 301 4e-80 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 301 5e-80 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 301 5e-80 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 301 5e-80 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 301 5e-80 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 301 5e-80 UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional... 300 5e-80 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 300 6e-80 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 300 6e-80 UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Ca... 300 9e-80 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 300 9e-80 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 300 1e-79 UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator... 299 1e-79 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 299 1e-79 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 298 2e-79 UniRef50_A1SUB0 Two component, sigma54 specific, transcriptional... 298 3e-79 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 298 3e-79 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 298 3e-79 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 297 5e-79 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 297 5e-79 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 297 6e-79 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 297 6e-79 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 296 7e-79 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 296 8e-79 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 296 8e-79 UniRef50_A1K925 Sigma-54 dependent response regulator n=5 Tax=Pr... 296 8e-79 UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verru... 296 8e-79 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 296 1e-78 UniRef50_C1A5W0 NtrC family two-component response regulator n=1... 296 1e-78 UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional... 296 1e-78 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 296 1e-78 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 296 1e-78 UniRef50_A8UVW5 Transcriptional regulator (NtrC family) protein ... 295 2e-78 UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional... 295 2e-78 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 295 2e-78 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 295 2e-78 UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional... 295 2e-78 UniRef50_Q253B4 Nitrogen regulation two-component transcription ... 295 2e-78 UniRef50_C8PZ92 Type 4 fimbriae expression regulatory protein Pi... 295 2e-78 UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional... 295 2e-78 UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Ta... 295 3e-78 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 295 3e-78 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 295 3e-78 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 295 3e-78 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 294 4e-78 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 294 4e-78 UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional... 294 6e-78 UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC ... 293 6e-78 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 293 6e-78 UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC ... 293 6e-78 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 293 7e-78 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 293 7e-78 UniRef50_A7HCY5 Two component, sigma54 specific, transcriptional... 293 8e-78 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 293 8e-78 UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/res... 293 9e-78 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 293 1e-77 UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator... 293 1e-77 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 293 1e-77 UniRef50_Q2BM46 C4-dicarboxylate transport transcriptional regul... 293 1e-77 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 293 1e-77 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 292 1e-77 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 292 1e-77 UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional... 292 2e-77 UniRef50_C1A631 Putative NtrC family two-component response regu... 291 3e-77 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 291 3e-77 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 291 3e-77 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 291 3e-77 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 291 3e-77 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 291 3e-77 UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional... 291 3e-77 UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional... 291 4e-77 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 291 4e-77 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 291 4e-77 UniRef50_B8KKY3 Sigma-54 factor, interaction region n=2 Tax=cell... 290 6e-77 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 290 6e-77 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 290 7e-77 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 290 7e-77 UniRef50_B2RIU9 Two-component system response regulator n=38 Tax... 290 8e-77 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 290 9e-77 UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein... 290 9e-77 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 290 1e-76 UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional... 290 1e-76 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 289 1e-76 UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC ... 289 1e-76 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA Sbjct: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM Sbjct: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV Sbjct: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI Sbjct: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM Sbjct: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELDANDFKE Sbjct: 421 AGRNRTEFYKLLSRHELDANDFKE 444 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/444 (83%), Positives = 404/444 (90%), Gaps = 1/444 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S A LLLVDDDP LLKLLG+RL+SEG+ V TA SG E LR+L R+ +DLVISDLRMDE Sbjct: 3 SAHSASLLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDE 62 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ LF+EIQ+ QPG+PVIILTAHGSIPDAVAATQQGVFSFLTKPVD+DALY+AIDDAL Sbjct: 63 MDGLALFSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDAL 122 Query: 122 EQSAP-ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 QS P D+ WR+A VTRSPLMLRLLEQAR+VAQSDVSVLINGQSGTGKE+ A+AIH A Sbjct: 123 AQSMPQGGDDAWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARAIHRA 182 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPR K FIAINCGALPEQLLESELFGHA+GAFTGAVS+REGLFQAA GGTLFLDEIGDM Sbjct: 183 SPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDEIGDM 242 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQVKLLRVLQERKVRPLGSNRD+DI+VRIISATHR+LPKAM GEFREDL+YRLNVV Sbjct: 243 PLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYRLNVV 302 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SL++PAL +R EDIPLLA HLLRQAAERHKP VR+FS+ AMK LM+ASWPGNVRQLVNVI Sbjct: 303 SLRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQLVNVI 362 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALT++PVI +ALVEQAL+GENTALPTFVEAR+ FEL+YLRKLLQITKGNVTHAARM Sbjct: 363 EQCVALTTAPVIGEALVEQALQGENTALPTFVEARHHFELHYLRKLLQITKGNVTHAARM 422 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELD NDFKE Sbjct: 423 AGRNRTEFYKLLSRHELDPNDFKE 446 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 215/451 (47%), Positives = 300/451 (66%), Gaps = 11/451 (2%) Query: 4 KPAHLLL-VDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +PA ++L +DDDP L+LLGL L SEGY V+ + +G++ L + DLVI+DLRM M Sbjct: 3 RPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMPGM 62 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DGM + +Q + P +PVI+LTAHGSIP+AVAA + F +L+KP + L + AL Sbjct: 63 DGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAALA 122 Query: 123 QSAPATDER---------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 Q + R ++I+ RSP M L+++ VA S SV ++G+SG+GKE Sbjct: 123 QRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKERV 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ASPR PF+A+NCGA+P L ESELFGH +GAFTGA + GL ++A GGTLF Sbjct: 183 ARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGTLF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEI D+P LQVKLLRVLQE +RP+G+ +I +++R+ISATH+D+ A G FREDL Sbjct: 243 LDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFREDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+V+ L++P+L+ER EDIPLLA H L + ++R + FS +A+ +LM SWPGNV Sbjct: 303 YYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPGNV 362 Query: 354 RQLVNVIEQCVALTSSP-VISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKG 412 R+L N + A+T V +DA+ + +G +A P +A+ FE YL LL+ T G Sbjct: 363 RELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFPPLQDAKAAFERGYLENLLRATDG 422 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 N++ AAR+AGR+RT+ YKL+ +H L FK Sbjct: 423 NISRAARIAGRHRTDLYKLMRKHSLAPQLFK 453 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/453 (47%), Positives = 297/453 (65%), Gaps = 10/453 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 + P H+ ++DDD L+LLGL L SEG+ V + + ++ + RE DLVI+DLRM Sbjct: 6 LGSDPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMP 65 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDGM++ +Q++ P +PVI+LTAHGSIP+AVAA + F +L KP + L + A Sbjct: 66 EMDGMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELESLVAAA 125 Query: 121 LEQ-SAPATDERWR--------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L Q A R R + I+ RSP+M +L+++ VA S SV + G+SG+GKE Sbjct: 126 LRQRQASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGESGSGKE 185 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 A+AIH ASPR PF+A+NCGA+ L ESELFGH +GAFTGA + GL +AA+GGT Sbjct: 186 RVARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRAADGGT 245 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI D+P LQVKLLRVLQE +RP+GS + +++R+ISATH+D+ A G FRE Sbjct: 246 LFLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFRE 305 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL+V+ L++P+LAER EDI LLA H L + R + ++ FS +A+ +L+ WPG Sbjct: 306 DLYYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLICRPWPG 365 Query: 352 NVRQLVNVIEQCVALTSSP-VISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 NVR+L N + ALT V ++ + + + G +A P +A+ FE YL LL+ T Sbjct: 366 NVRELENAVTLAAALTEKGWVAAETIPDPSRAGGRSAFPPLQDAKAAFERGYLENLLRAT 425 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 GN++ AAR+AGR+RT+ YKL+ +HEL +FK Sbjct: 426 DGNISRAARIAGRHRTDLYKLMRKHELTPQEFK 458 >UniRef50_A0KQD3 Transcriptional regulatory protein ZraR n=2 Tax=Aeromonas RepID=A0KQD3_AERHH Length = 426 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/440 (51%), Positives = 291/440 (66%), Gaps = 20/440 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +LLVDDD LLKL+ +RL S+GY V TA+S L L +++ DLV+SDLRM MDG+ Sbjct: 2 SRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMDGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 LF IQ G+PVII+TAHG+IPDA+ AT+ GVFSFLTKP+DKD L+ I+ AL + Sbjct: 62 ALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSLTR 121 Query: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 P + W+ I+TR+P M +LL QA +A +V VLI G SG+GK + QA+H AS R Sbjct: 122 PKQRQDWQSLILTRNPQMEQLLIQAGSIAAMEVPVLIMGPSGSGKGVMTQALHQASSRRD 181 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 KP INC ALP L+ +LFG + GLF+ A+G TLFLDEIGD+ LQ Sbjct: 182 KPLHVINCAALPWAALDLQLFGE---------DGQSGLFEQAKGATLFLDEIGDLSESLQ 232 Query: 246 VKLLRVLQER-KVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 KLL+VLQE + P VR+IS++H+DL AM G FREDL+YRLNV ++ + Sbjct: 233 AKLLQVLQEYGQGTP---------EVRVISSSHQDLVAAMEEGRFREDLFYRLNVANITL 283 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVR-AFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 P L+ R+EDIPLLA L RH FS +A+ L A WPGNVRQL +V+EQ Sbjct: 284 PPLSARSEDIPLLARQALDDYRSRHGDCAALGFSPEALALLAAAGWPGNVRQLCSVVEQL 343 Query: 364 VALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGR 423 +L SPVI A+VE AL G + +P+F EAR +FE YL +LL+ T+GNVT AA MAGR Sbjct: 344 ASLCCSPVIGAAMVESALSGGSGGIPSFNEARAEFEKEYLIRLLRTTEGNVTLAANMAGR 403 Query: 424 NRTEFYKLLSRHELDANDFK 443 NRT+FYKLL+RH ++A +FK Sbjct: 404 NRTDFYKLLNRHGIEAANFK 423 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/451 (46%), Positives = 288/451 (63%), Gaps = 15/451 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD GL L+ RL GY V AE G E L E + DL+M+EMDGM L Sbjct: 6 ILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMVL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD-KDALYQAIDDALEQSAP 126 ++ VQP +PVIILTA+G+I AV AT++G + F+TKP + KD LY+ ++ ALE + Sbjct: 66 LEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYR-LEKALEVGSL 124 Query: 127 ATD-ERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ER R + I+ S M ++L Q +A +D +V + G+SGTGKE+ A+ Sbjct: 125 RMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKV 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R+ PF+AINCGA+PE LLESELFGH +GAFTGA ++GL Q AE GTLF+DE Sbjct: 185 LHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++ LQVKLLRV Q+ + P+G + + ++ R+++AT++DL KA+ G+FREDLYYR Sbjct: 245 IAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V+ + +P L ER EDIPLLA+H L+ + FS DAM RLM WPGNVR+L Sbjct: 305 IHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDA---LVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 NV+E+ V L I L +A+ T LP AR++FE YL ++L TKGN Sbjct: 365 ANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERAYLIQVLHSTKGN 424 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 V+ AA AGR R EFYKLL +++LD FKE Sbjct: 425 VSRAAAKAGRYRAEFYKLLRKYDLDPATFKE 455 >UniRef50_Q2NS23 Putative two-component transcriptional regulator n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NS23_SODGM Length = 259 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/273 (70%), Positives = 218/273 (79%), Gaps = 24/273 (8%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + + AHLLLVDDD LLKLLG+RLTSEG++V TAE+G E LR+L R K+DLVISDLRMDE Sbjct: 3 ARRHAHLLLVDDDTSLLKLLGMRLTSEGFTVTTAENGQEALRLLQRGKIDLVISDLRMDE 62 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ LF IQ+ QPG+PVIILTAHGSIPDAV+ATQ+GVFSFLTKPVD+DALY AID AL Sbjct: 63 MDGIALFKAIQQ-QPGLPVIILTAHGSIPDAVSATQEGVFSFLTKPVDRDALYCAIDGAL 121 Query: 122 EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 + A DERW +AIVTRSPLMLRLLEQA++VAQSDVS+LI+GQSGTGKEI A+ IH AS Sbjct: 122 ALTRLAGDERWWDAIVTRSPLMLRLLEQAKMVAQSDVSILISGQSGTGKEILAKVIHAAS 181 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR HARGAFTG VS REGLFQ A+GGTLFLDEIGDMP Sbjct: 182 PR-----------------------AHARGAFTGVVSQREGLFQTADGGTLFLDEIGDMP 218 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIIS 274 LQVKLLRVLQERKVRPLGS+RD I+VRI+S Sbjct: 219 LSLQVKLLRVLQERKVRPLGSDRDCAIDVRILS 251 >UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMF5_9BACT Length = 449 Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 293/447 (65%), Gaps = 12/447 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE-MDGMQ 66 +LLVDDD LL++L LR S GY+ A++ + + ++ + D + D+R+D+ G++ Sbjct: 4 VLLVDDDNSLLEILRLRFQSCGYTPFAADNSQKAVSLIKSDVFDAAVFDMRLDDGKTGLE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ--- 123 L EI+++ +PVI LTA+G+I DAV + ++G FS+LTKP D L ++ A++Q Sbjct: 64 LLREIKEIDSELPVIFLTAYGTIDDAVQSMKEGAFSYLTKPFDYKELIAKVEKAVQQCSF 123 Query: 124 -------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 +A +D + I+ +S + E+ + A+SD +V I G+SGTGKE+ A+ Sbjct: 124 SRQLLRINAEESDSPISKTIIGKSSKTKMIRERIAIAAKSDANVFIYGESGTGKELVARM 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H +S R+ KPF+A N A+PE L+ESELFG+ +GAFTGA ++G F+ A+GGT+F+DE Sbjct: 184 LHQSSLRSDKPFVAFNSSAIPETLMESELFGYEKGAFTGADKKKKGFFEQAQGGTVFIDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +MP +Q KLLRVL+ R+V PLGS + I +++R+++A++++L + EFR DL+YR Sbjct: 244 ISEMPVSMQTKLLRVLENREVSPLGSEKTIKLDIRLVTASNKNLKDKIENDEFRADLFYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V+ +++PAL +R EDIPLL H L++ +R+ ++FS DA+ +++ WPGN+R+L Sbjct: 304 IHVIEIEVPALRDRREDIPLLCGHFLKKYTDRYSLGTKSFSGDAIDKMVNYDWPGNIREL 363 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 NVIE V LTS I ++ A E E T + EA+ +FE ++L++L++ +GN++ Sbjct: 364 QNVIECAVVLTSVGTIKGDNIKLAHESE-TYTQVYREAKKEFEASFLKQLMERAEGNISK 422 Query: 417 AARMAGRNRTEFYKLLSRHELDANDFK 443 A+R++ R + Y LL +H +D DF+ Sbjct: 423 ASRISDIYRADLYDLLKKHSIDPADFR 449 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/445 (43%), Positives = 286/445 (64%), Gaps = 18/445 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDDD +L L+ L+L + GY++ T S E L + E DL++ D M E+ G++ Sbjct: 4 RILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE---- 122 +++ PVI++TA+GS+ DAV A ++G F ++TKP++ + L ID ALE Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDL 123 Query: 123 -------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 +S +TD I+ SP M ++LE A+ +A D +VLI G+SGTGKE+ A Sbjct: 124 KKELNELKSLLSTD------IIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIAN 177 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 IH S R +PFIAINCGA+P +LLESELFG+ +GAFTGA ++++GL + AEGGTLFLD Sbjct: 178 FIHKNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLD 237 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++P LQVKLLRVLQE +++P+GSNR I+VR I+AT+RDL K + G+FREDLYY Sbjct: 238 EIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYY 297 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NV+ + IP L ER EDI LA + + + R+ + S A ++L+ + GNVR+ Sbjct: 298 RINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRE 357 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG-ENTALPTFVEARNQFELNYLRKLLQITKGNV 414 L N+IE+ V T I+D V + + L F EA+ +FE +YL+ LL+ T N+ Sbjct: 358 LENIIERAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNI 417 Query: 415 THAARMAGRNRTEFYKLLSRHELDA 439 + A+++AG R + Y+++ R+ ++ Sbjct: 418 SKASKIAGITRAQIYRMIKRYGIEG 442 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/446 (41%), Positives = 287/446 (64%), Gaps = 10/446 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DDD +L++L +RL + GYSV A+ G E VL + K++LV+ DLR+ E +G++L Sbjct: 6 ILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLSEENGIEL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +I K P +P+II+TAHGSI AV A ++G +S++ KP D L I +ALE+ Sbjct: 66 MRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNALEKQRLT 125 Query: 128 T---------DERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 DER I+ ++ ML +LE V+++D +V+I G+SGTGKE+ A+AI Sbjct: 126 QEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKELIARAI 185 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + PFIA NCGA+PE LLE+ELFGH RGA+T A ++EGLF A+ G++FLDEI Sbjct: 186 HQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSIFLDEI 245 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 + Q+KLLRVLQER+++P+GS ++ INVRII+A++ DL KA++ G FR+DL+YR+ Sbjct: 246 SNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDDLFYRI 305 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V+ + +P L +R +DIPLLA + + + + K FS A++R++ WPGN+R+L Sbjct: 306 HVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWPGNIRELR 365 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 N IE + + I + ++ +A+ +FE Y+ LL+ GN+T+A Sbjct: 366 NKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAKERFEREYIENLLKANNGNITNA 425 Query: 418 ARMAGRNRTEFYKLLSRHELDANDFK 443 ++MA R R + YKL+ ++ ++ D+K Sbjct: 426 SKMASRYRADIYKLIKKYNINPEDYK 451 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 194/443 (43%), Positives = 276/443 (62%), Gaps = 11/443 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L+VDDD +L L GY+V A SG E L + DLV+ D+RM Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ + P +PV+I+TA S+ AV A + G +L KP+D D L + ++ + Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + E + +V +SP M +LL + +VA SD +VLI+G SGTGKE+ A+ Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + + G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV+++ P+L +R EDIPLLA H L++ A R++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTF----VEARNQFELNYLRKLLQITK 411 L N IE+ V L + IS+ E L N A+P ++ + E + L+ T Sbjct: 361 LENAIERAVVLLTGEYISER--ELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTG 418 Query: 412 GNVTHAARMAGRNRTEFYKLLSR 434 GN T AAR G R LSR Sbjct: 419 GNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 194/438 (44%), Positives = 274/438 (62%), Gaps = 15/438 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM EMDG+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIAT 67 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 EI+ + P +P++I+TA S+ AV A + G +L KP+D D L + ++ AL + Sbjct: 68 LKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKALAHTRET 127 Query: 128 TDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASP 182 E + ++ SP M LL + +VA SD +VLI+G SGTGKE+ A+A+H S Sbjct: 128 GAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 187 Query: 183 RNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA 242 R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLDEIGD+ Sbjct: 188 RSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 Query: 243 PLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSL 302 +QV+LLR +QER+V+ +GSN+ I ++V +I+ATHRDL + ++ G FR+DLYYRLNVV++ Sbjct: 248 LMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAI 307 Query: 303 KIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 ++P+L +R EDIPLLA+H LR+ AER++ V+ F+ AM L+ WPGN+R+L N IE+ Sbjct: 308 EMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAIER 367 Query: 363 CVALTSSPVISD-----ALVEQALEGENTA-LPTFVEARNQFELNYLRKLLQITKGNVTH 416 V L + IS+ A+ ++ EN+A + V+ + L L K T GN T Sbjct: 368 AVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEK----TGGNKTE 423 Query: 417 AARMAGRNRTEFYKLLSR 434 AAR G R LSR Sbjct: 424 AARQLGITRKTLLAKLSR 441 >UniRef50_D2L101 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L101_9DELT Length = 466 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 202/469 (43%), Positives = 286/469 (60%), Gaps = 29/469 (6%) Query: 1 MSHKPAHLLLVDDDP----GLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISD 56 M+ P +L+VDD P GL +LL RL S V SG L L R ++++D Sbjct: 1 MTDTP-RVLIVDDQPDFAKGLARLLAPRLPGASLSYVL--SGEAALADLERAPCAVLVTD 57 Query: 57 LRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 LRM + G+ L + PG+ V++LTAHG I AVAA + G + FLTKPVD + L + Sbjct: 58 LRMPGLSGLDLLPRALALAPGLGVVLLTAHGDIDTAVAALKAGAYDFLTKPVDSEHLSRV 117 Query: 117 IDDALEQSAPATDE-RWREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 I LE++A T+ R R A+ + RSP M+++ E VA SD +VLI G+S Sbjct: 118 IAKGLERAALLTENIRLRAAVKACGADVGLLGRSPAMVQVTEAIAAVAGSDYTVLIRGES 177 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 GTGKE+ A+A+H S R + PF+++NC A+P+QLLESELFGH RGAFTGA +R GLF + Sbjct: 178 GTGKELAARAVHALSRRAAGPFLSVNCPAIPDQLLESELFGHVRGAFTGAERDRRGLFLS 237 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 AEGG + LDEIGD+P +Q KLLRVLQER++RP+GS+R + ++VRI++AT++DL +A Sbjct: 238 AEGGVIVLDEIGDIPMSVQTKLLRVLQEREIRPVGSSRSLPVDVRILAATNQDLEARIAD 297 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 FREDLYYRLNV+++++P L ER +DIPLLA L +A + FS +A+ L Sbjct: 298 KTFREDLYYRLNVLTVRLPPLRERRDDIPLLATAFLERACRETGIGEKEFSPEALAGLAG 357 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------FVEAR--- 395 WPGNVR+L+N + + VI + ++ A G N T ++EA+ Sbjct: 358 RDWPGNVRELLNFVRRLTVFCRGDVIGPSALQAADPGHNEPAETDDADLPAPYLEAKARV 417 Query: 396 -NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + F Y+ +LL T+GNV+ AAR++G R K+L R + A F+ Sbjct: 418 VDAFTRRYVERLLSQTRGNVSEAARLSGLERVSLQKILRRLGIVAEGFR 466 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 292/455 (64%), Gaps = 25/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H++++DD+P +L+ + GY T E E L + R + DL+I+D++M + DG + Sbjct: 6 HIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDGFE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + P VI++T + S+ AV A ++G + +L+KP + L I+ AL+ A Sbjct: 66 VLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKALQHIAL 125 Query: 127 ATDERW-----REAIVTRSPLMLR-----LLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + +E + T + + R + E ++ SD S+LI G+SGTGKE+ A+A Sbjct: 126 TEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKEVIARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R++ PFI ++C +LPE LLESELFG+ RGAFTGA + ++GL + A GGTLFLDE Sbjct: 186 IHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++ +Q KLLR L+ER +R +G NR I+I++R+++AT+RDL KA+ EFREDLYYR Sbjct: 246 LGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFREDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +NV++LK+P L ER +DIPLL NH ++ ++ V F+ +AM+ + + +WPGN+R+L Sbjct: 306 INVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPGNIREL 365 Query: 357 VNVIEQCVALTSSPV--ISDALVEQALEGENTALP--------TFVEARN----QFELNY 402 NV+E+ ++L+ S + ISD L E+ + G+ LP +F EA++ +FE+ Y Sbjct: 366 RNVVERAISLSGSEMVEISD-LPEKVIGGQKKILPEQENLGAFSFHEAKDICLKRFEMEY 424 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L++LL GN+T AA+ AG +R ++L+++++L Sbjct: 425 LKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDL 459 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 189/466 (40%), Positives = 287/466 (61%), Gaps = 29/466 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSE--GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 L+++DD+ +L+ L L E V T S GL + R+ VD+++ D+RM EMDG Sbjct: 5 RLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMPEMDG 64 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 M++ ++++ P + V+++TA+GSI AV A ++G + F+TKP + L + ++ ALE+S Sbjct: 65 MEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKALERS 124 Query: 125 ----------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 +++ V +SP M RL + + +A +D +VLI G+SGTGKE+ A Sbjct: 125 LLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGKELVA 184 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H SPR+S+ + +NC A+PE LLESELFGH +GAFTGA N G+F A+ TL L Sbjct: 185 RALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKSTLLL 244 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+P +Q KLLRVLQER+VRPLGS++ ++VRI+S T++DL + FREDLY Sbjct: 245 DEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFREDLY 304 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV+L+ P+L+E TEDIPLLA+H LR ++ FS A++ +M SWPGNVR Sbjct: 305 YRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWPGNVR 364 Query: 355 QLVNVI--------EQCVALTSSPVISDALV-----EQALEGENTALPTFVEARNQ---- 397 +L N + E+ + V D+L Q + A+ + +A+ + Sbjct: 365 ELQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAKEELLEN 424 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F Y+ +LL T+GNVT A+ +AG +RT K++ R+E+ + D++ Sbjct: 425 FTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRRYEIRSEDYR 470 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 189/468 (40%), Positives = 291/468 (62%), Gaps = 34/468 (7%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 KP +L+VDD+P LL+ L L +GYSVV +S + L E D+ + D++M ++ Sbjct: 8 KPVRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLS 67 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDALE 122 G++L + ++ +P + VI++T H ++ A+AA + G + +LTKP D + + +A+ A E Sbjct: 68 GLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAE 127 Query: 123 QSAPATDERWR-------------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 + D R E +V S + ++ VA S +VL+ G+SGTG Sbjct: 128 RKM-LFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTG 186 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+A+H SPR ++PF+A+NCGAL E LLESELFGH +GAFTGA +++GLF AA+G Sbjct: 187 KELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADG 246 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT+FLDEIGD+P QV+LLRVLQE +++ +GS + ++VR+I+ATHRDLP+ + G+F Sbjct: 247 GTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKF 306 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL+YRLNV+++ +P+L +R +D+PLLA+H LR+ AER VRA + DA++ L W Sbjct: 307 REDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRW 366 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDA------------LVEQALEGENTAL---PTFVEA 394 PGNVR+L N IE+ V L ++ LV +A G + A+ ++ A Sbjct: 367 PGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATA 426 Query: 395 RNQ----FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + Q FE Y+ L++ N++ AAR AG +R+ F ++L ++ D Sbjct: 427 KEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKYRTD 474 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 189/449 (42%), Positives = 274/449 (61%), Gaps = 24/449 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+P LK+L L EGYSV A AE + L++E +D VI+D++M DG+ Sbjct: 7 GKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGI 66 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 QL + + P +P+I LTA+GS+ AV A +G F + KP D L + A+EQ + Sbjct: 67 QLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRS 126 Query: 126 PATD-ERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + E R+ IV +P MLR+ E V S SVLI G++GTGKE+ A++ Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R KPF+A+NC A+P +L+ESELFG+ +GAF+GA S R G F+ A GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ PLQ KLLRVLQE+++ LGSN+ I +N R+IS+T+R++P + G FREDL+YR Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV +++P L +R EDIPLLA L+R+ R +R F + M+ + WPGN+RQL Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELVREYGAREGKVLR-FDDEVMQVFLNYDWPGNIRQL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKL--------LQ 408 N+IE+ V L I+ + + L+ P V ++ ++ LR+L L+ Sbjct: 366 GNIIERAVVLAKKDRITTKELPEELK------PYVVRVESRQQVRTLRELEEAAILAALE 419 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + GN +HAA+M G +R YK L E+ Sbjct: 420 ESGGNKSHAAKMLGISRKALYKRLGEMEV 448 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 346 bits (888), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 274/447 (61%), Gaps = 17/447 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+VDDD +L L GY V A +G + L + + DLV+ D+RM Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L + +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LEQS----APATDERWRE-AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + +P T+ + +V SP M LL LVA SD +VLI+G+SGTGKE+ A+ Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ +P + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + ++ G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++ +P L R EDIP LA + L++ AER++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQFELNYLRKLL 407 L N +E+ V L + IS+ + A+ G A + VE + L L + Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALER-- 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSR 434 T GN T AAR G R LSR Sbjct: 419 --TGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 344 bits (883), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 191/460 (41%), Positives = 289/460 (62%), Gaps = 25/460 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL+VDD+ LL+LL L + G V A SG E L VL RE VDL++ D++M EM+G++ Sbjct: 6 LLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPEMNGLE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ P + V+++TAHG I AV A + G + F+TKP D + L +++ ALE+S Sbjct: 66 LLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKALERSRL 125 Query: 127 ATDE-------RWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + EA +V +S M R+ E ++VA++D++VLI G+SGTGK++ +A Sbjct: 126 LRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKDLACRA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R S PF+A+NC A+PE +LESELFG+ +GAFT A NR GLFQ A GT+FLDE Sbjct: 186 IHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGTIFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+ +Q KLLRVLQE+ ++PLG + + ++VR++++T+RDL + RGEFREDL+YR Sbjct: 246 IGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFREDLFYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 LNV+ + +P+L ER EDIPLL NHL+ + A ++P ++ + + + + A WPGNVR+ Sbjct: 306 LNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPR-KSVAPELTEIFLRAPWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVI--SDALVEQALEGE-------NTALP---TFVEARNQFELNYL 403 L NVI + + I D + ++G +T +P EA F Y Sbjct: 365 LENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRGFHAEYF 424 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 +L T+GNV+HAA++ G R +LL R+ + ++ ++ Sbjct: 425 GGVLTATRGNVSHAAKLCGLERQALQQLLRRYGIRSDAYR 464 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 187/448 (41%), Positives = 275/448 (61%), Gaps = 18/448 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+PG+ + LG L EG+ V TA GAEG+ + + + LV D++M +DG++ Sbjct: 4 RILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDGLE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL-EQSA 125 + +++ P V++++ H +I AV ATQ G + L KP+D D + + +A + Sbjct: 64 VLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNRQL 123 Query: 126 PATDERWREAIVTRSPLMLR------LLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 ++R RE I +R ++ R LLE+ V + VLI G++GTGKE+ A+AIH Sbjct: 124 TEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAIHR 183 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R KPFI +NC A+P +L+ESELFGH +G+FTGA+++R G F+ A GGTLFLDEIGD Sbjct: 184 GSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEIGD 243 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q K+LRVLQ+ V +G ++ + ++VR+++AT++DL + +A G FREDLYYRLNV Sbjct: 244 MSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRLNV 303 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V + +PAL ER EDIPLL H L+Q AER R+ S +A++RL WPGNVR+L N Sbjct: 304 VPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRELRNT 363 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALP----------TFVEARNQFELNYLRKLLQI 409 +E+ V L S+ IS A +++ L G TA P TF E + E +L L+ Sbjct: 364 MERLVILASAASISVADIDR-LAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLLAKLRA 422 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHEL 437 NV+ AR R+ YK + R+ L Sbjct: 423 FDWNVSETARALDMPRSNLYKKIERYAL 450 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 187/458 (40%), Positives = 278/458 (60%), Gaps = 27/458 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+H +LL+VDD+P L LL L+ G V TA +G L+VL +E +DLVISD RM Sbjct: 1 MTH---NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG QL EI++ P +PVI++TA+ ++ +AV + + G + ++ KP D D L + A Sbjct: 58 GMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKA 117 Query: 121 LE----------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ A + + +++V SP R+L+ V +S+ ++L+ G+SGTGK Sbjct: 118 LQFRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH R KPF+A+NC A+PE LLESE+FGH +GAFTGAV++R G FQ A+ G Sbjct: 178 EMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GDMP LQ K+LR LQER + P+G R+ ++VR+I+AT+++L +A+A EFR Sbjct: 238 TLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNV + +PAL ER EDI LLA H + FS +A++ + + +WP Sbjct: 298 EDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA------LVEQALEGENTA-------LPTFVEAR-N 396 GN+R+L N +E+ + + VI + QA E++A +P+ +EA Sbjct: 358 GNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALA 417 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 + E Y+ LQ + G AA++ G + F+ L + Sbjct: 418 EVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_Q314G6 Two component transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=Q314G6_DESDG Length = 488 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 189/473 (39%), Positives = 277/473 (58%), Gaps = 39/473 (8%) Query: 8 LLLVDDD----PGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 LL+VDD+ GL +L+ R VV S E L VL V L+++DLRM EM Sbjct: 18 LLIVDDERDFASGLARLISSRFRD--IDVVPVFSAKEALEVLAERSVHLMMTDLRMPEMG 75 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GMQL + +VQPG+ +++LTAHG+I AV A Q G + FLTKP++ D L+ A+ LE+ Sbjct: 76 GMQLLRQALEVQPGLSMVVLTAHGTIETAVEALQSGAYDFLTKPIEPDQLFSAVAKGLER 135 Query: 124 S-APATDERWREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 S + R R+ I V M +L VAQSD +VL+ G+SGTGKE+ Sbjct: 136 SRLLEENNRLRQIISAGGEPGELVGEGRAMQQLKRTIAAVAQSDYTVLVRGESGTGKELV 195 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ +H R +PF+A+NC A+PE LLESELFGH +GAFTGA + +GLF A+ GTL Sbjct: 196 ARLVHRLGNRAGRPFMAVNCPAIPENLLESELFGHVKGAFTGADRDHKGLFAVADKGTLH 255 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGD+ AP+Q KLLR LQ+ ++RP+G++R ++VR++++T++DL +A FREDL Sbjct: 256 LDEIGDISAPIQTKLLRCLQDGEIRPVGASRSETVDVRVVASTNQDLEARIADKSFREDL 315 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+++ +P L ER EDIPLL ++LLR+A + S D ++ + +WPGNV Sbjct: 316 YYRLNVLTVTLPPLRERVEDIPLLVHYLLRKACTEMGLEEKEISPDVVEWMTRRTWPGNV 375 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV--------------------- 392 R+L N + + + ++ ++ +G A+P V Sbjct: 376 RELQNFVRRLTVFCAGRLVDMDIIRMVEQGSGGAMPPVVAGGLSPGGFRSGEGFVPYKDA 435 Query: 393 --EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + + F YLR LL GNV+ AARM+G +R K+L+R +++ ++ Sbjct: 436 KAKVVDDFTTAYLRDLLTSAGGNVSEAARMSGLSRVALQKILTRLDINVARYR 488 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 189/441 (42%), Positives = 273/441 (61%), Gaps = 20/441 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +H+L+V+DD L + L +T G++ +TA+ G E L +L +V++D+RMD++DG Sbjct: 18 SHVLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMDKLDGN 77 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 QL EIQK +PG+PVI++TA+GS+ DAV A + G +L KP L + I ++ Sbjct: 78 QLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQVLIEKIKQYIKTDL 137 Query: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 D + R P LL A VAQSDV V+I+G+SGTGKE+ A IH+ S R+ Sbjct: 138 SEEDN----DPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKEVLAHFIHDHSYRSK 193 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 +PFIAINC A+PEQ+LE+ LFG+ +GAFTGA + G F+ A+GGTL LDE+ +M LQ Sbjct: 194 QPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKSTPGKFEQAQGGTLLLDEVSEMSLGLQ 253 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLRVLQE++V +GSN+ I+++VRII+ T+R L + + G FREDLYYRLNV L+ Sbjct: 254 AKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEEVQAGRFREDLYYRLNVFPLQWH 313 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L ERT DI LAN+L+R+ + +P V S DA K +++ SWPGN R+L NVI++ + Sbjct: 314 PLRERTSDIIPLANYLIRKHCQHKQPIVPVISPDAQKAMLSYSWPGNARELDNVIQRALV 373 Query: 366 LTSSPVISDALVEQALEGEN-TALPTFVEAR--------NQFELNYLRKLLQITKGNVTH 416 L + +I E+ L+ N T +P+ + + +++EL + K L +GN Sbjct: 374 LQTQGIIE----EEHLQITNSTTMPSEEKTKGTSKNLQIHEYEL--IEKTLLENEGNRQK 427 Query: 417 AARMAG-RNRTEFYKLLSRHE 436 A + G RT YKL E Sbjct: 428 VAALLGVSERTLRYKLAKMRE 448 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 340 bits (871), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 189/456 (41%), Positives = 272/456 (59%), Gaps = 23/456 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K +LLVDDDPG+L L L+ GY TA GAE + L+++ D+V++DL M MD Sbjct: 6 KMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMD 65 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM + +QK ++LT GSI ++V A + G F ++TKPV D L ++ A++ Sbjct: 66 GMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKF 125 Query: 124 S---------APATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 +++R E V SP + R+ E VA +D +VLI G+SGTGKE+ Sbjct: 126 KRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELI 185 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH SPR P + INCGA+PE+LLESELFGH +GAFTGA R G F+ A GGT+F Sbjct: 186 ARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIF 245 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM LQVKLLRV+QE+ +GS R + +++RI++AT++DL +A+ + EFREDL Sbjct: 246 LDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDL 305 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGN 352 YYRLNV+ +++P L +R DIPLL + + + AAE+ +P V+ S AM LM WPGN Sbjct: 306 YYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERP-VKRISQAAMNALMGHHWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----------FVEARNQFELN 401 VR+L NV+E+ + L+S I + + G ++ P F A ++E N Sbjct: 365 VRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKN 424 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + L+ T AA++ NRT + + R + Sbjct: 425 LIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 185/457 (40%), Positives = 273/457 (59%), Gaps = 27/457 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A LL+VDDD G L +L LT GY V A GAE + ++ D V+ D+RM M GM Sbjct: 3 AELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGGM 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + + I++ P +PV+I+TA+ S+ AV+A + G + +LTKP+D D + ++ AL+ Sbjct: 63 EALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHLR 122 Query: 126 PA-TDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 A +E R+ I+ +SP M L +VA ++ +VL+ G+SGTGKE+ A+ Sbjct: 123 LARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAK 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR P +A+NC AL E LLESELFGH +GAFTGA REG F AA+ G++FLD Sbjct: 183 ALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +Q KLLRV+QER+++ +G +R + ++VRI++AT+RDL K + G FREDLYY Sbjct: 243 EIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++ +P L ER +DIPLLA H L + AE+++ ++ F+ AM L+ WPGNVR+ Sbjct: 303 RLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVRE 362 Query: 356 LVNVIEQCVALTSSPVISD------ALVEQALEGENTALPTFVE-----------ARNQF 398 L N +E+ V L+ +++ A+ E G A + Sbjct: 363 LENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDV 422 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 E + L+ T GN + AAR+ G R +K L ++ Sbjct: 423 EREVILATLRDTGGNKSEAARVLGITRATLHKKLKKY 459 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 180/439 (41%), Positives = 267/439 (60%), Gaps = 12/439 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L +DD+ LK + L EGY+V T+ + EG+ VL ++ ++ D R+ MDG+ Sbjct: 2 ANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L ++ + +P ++LTA+G+I AV A + G + +L KPVD + L I +A+E+S Sbjct: 62 DLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSK 121 Query: 126 PATDERWREA----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 E I+ +S + + ++VA+S+ +VLI G+SGTGKE+ A+AIH S Sbjct: 122 GIQKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNS 181 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R SKPFI ++C +PE LLESELFGH +GAFTGA + GL + A GT+FLDEIG++P Sbjct: 182 LRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELP 241 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR LQE++++ +GS + I ++VR+ISAT++DL KA+ G FREDLY+RLNVV Sbjct: 242 MLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVR 301 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 + +P L ER EDIPLL NH L + ++ + + + M L+ WPGN+R+L NVIE Sbjct: 302 INLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIE 361 Query: 362 QCVALTSSPVISDALVEQALEGENTALPTFVEARNQFEL-----NYLRKLLQITKGNVTH 416 + V L+ S +IS + + ++ ENT E N F L + K L T N T Sbjct: 362 RAVVLSPSGLISIKHLPRRIQ-ENTGWTIIKE--NTFNLLEVEKALILKALNSTGWNQTK 418 Query: 417 AARMAGRNRTEFYKLLSRH 435 AA + G +R + + H Sbjct: 419 AAEILGISRKQLRTKMKHH 437 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 338 bits (867), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 186/462 (40%), Positives = 276/462 (59%), Gaps = 24/462 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL+D++ GL +++ L GY V S + + + DLVI+D++M M G++ Sbjct: 6 RILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMPGMTGLE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +++ +PVII+TA+ ++ ++ A ++G + LTKP + D L + +AL+Q+ Sbjct: 66 VLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNALQQAQL 125 Query: 127 ATDER--WREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R RE I+ S + +L++ VA D S+LI G+SGTGKE+ AQA Sbjct: 126 TEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKELIAQA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R F+A+NCG LPE +LESELFG+ +GAFTGA NR+GL +AA+GGTLFLDE Sbjct: 186 VHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P +Q LLR LQE++ R +G ++VRIISAT+ DL + + G FREDLYYR Sbjct: 246 VGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFREDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV+L +P L +R +DIPLLA H + ++ V+AF DAM+ L T WPGN+RQL Sbjct: 306 LNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWPGNIRQL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALE-GENTALPT-------------FVEARNQFELNY 402 NVIE C+A+ +S IS + Q ++ E +P F EA +FE + Sbjct: 366 RNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALERFERDL 425 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 LR LL+ G V AAR AG N Y+ + R+ L ++ + Sbjct: 426 LRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLKKEEYAD 467 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 337 bits (865), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 185/447 (41%), Positives = 267/447 (59%), Gaps = 17/447 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+ G+ +LL L G+ S AE +L E D+V++D+ M M G+ Sbjct: 3 GRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L I + +P +PVI++TA GS+ A +A + G + F+TKP + DAL ++ AL A Sbjct: 63 DLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRA 122 Query: 126 ----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 D R E I++ SP+M + + +A SD S+LI G+SGTGKE+ A+ Sbjct: 123 LREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVAR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R+ F+A+NC A+P+ LLESELFGHARGAFT A R GLF A GGTLFLD Sbjct: 183 AVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++P LQ KLLR LQER VRP+G++ ++ ++VR+I+AT+RDL A+ FREDLYY Sbjct: 243 EIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NVV + +P L R D+ LLA H L A ++ S A ++LM +WPGNVR+ Sbjct: 303 RINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRE 362 Query: 356 LVNVIEQCVALTSSPVIS-DALVEQALEGENTAL------PTFVEARNQFELNYLRKLLQ 408 L N IE+ VAL I+ D L E+ + + PT + + E Y+ ++L+ Sbjct: 363 LQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRVLE 422 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRH 435 + GN + AA++ G +R Y+ L R+ Sbjct: 423 VVGGNKSQAAQILGFDRATLYRKLERY 449 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 182/451 (40%), Positives = 270/451 (59%), Gaps = 19/451 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 P +L+VD+D L + + L GY A SG EG+R + ++ ++VI+DL M+++DG Sbjct: 15 PIRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDG 74 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA---- 120 M++ A ++ P VI++T H ++P AV A QQG F+FL KP+ L + A Sbjct: 75 MEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAV 134 Query: 121 -LEQSAPATDERWRE-----AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L Q+ ++R E I+ S M +++++ + +A +D SVLI G+SGTGKE+ A Sbjct: 135 RLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVA 194 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 QAIH SPR SK +A+NC A+ E L+ESELFGH +GA+T A+++R G F+ A GGTLFL Sbjct: 195 QAIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLFL 254 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+GDMP Q+KLLRVL+E ++ +G N+ I +NVR++SAT+R L A+ G FR DLY Sbjct: 255 DEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADLY 314 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL VV++++PAL +R EDI LA+H RQ RH + S +RL + WPGNVR Sbjct: 315 YRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNVR 374 Query: 355 QLVNVIEQCVALTSSPVIS-DALVEQALEGENTALPTFVEARNQF--------ELNYLRK 405 QL N IE V L + ++ D L + ++ E P ++ E + + Sbjct: 375 QLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWAIEE 434 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 L++T GN AAR+ G Y+ L +++ Sbjct: 435 TLKLTSGNREEAARILGIGARTLYRKLDKYQ 465 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 333 bits (853), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 181/452 (40%), Positives = 272/452 (60%), Gaps = 38/452 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ L ++L +L+ +GY V TAE G EGL L +DLVI+DLRM ++DGM Sbjct: 7 QILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMD 66 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L + P PV++LTAHG++ +AV A + G F ++TKP D++ + + AL Sbjct: 67 LLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDL 126 Query: 127 ATDERWRE-------------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A+ + R+ I+ SP + L VA + +VLI+G+SGTGKE+ Sbjct: 127 ASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGKELV 186 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H S R +PFI +NC A+P+ L+ESELFG+ RGAFTGAV+++ G F+ A GGTLF Sbjct: 187 ARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++P +QVKLLRVLQE + +G + I ++VR+++AT+RDL + +A G FREDL Sbjct: 247 LDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV + +PAL +R DIP L H + + R K + + +A++RL + +WPGN+ Sbjct: 307 FYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASHAWPGNI 366 Query: 354 RQLVNVIEQCVALTSSPVIS-DALVEQALEGENT-------------------ALPTFVE 393 R+L NV+E+ + I D L E+ G + + P ++ Sbjct: 367 RELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLK 426 Query: 394 -----ARNQFELNYLRKLLQITKGNVTHAARM 420 A ++ E + + + L+ T GNVTHAAR+ Sbjct: 427 EQVKAAMSKLERDLIERALKQTHGNVTHAARL 458 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 176/386 (45%), Positives = 255/386 (66%), Gaps = 11/386 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL++DD+PG ++ + G+SV A SG EGL L +++V++V+ D+RM MDG + Sbjct: 3 RLLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDGQE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------ 120 A IQ++ PG+PV++LTA G++ AV A ++G F +LTKP D + L ++ A Sbjct: 63 TLARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFGRL 122 Query: 121 LEQSAPA----TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 LE++ +D+ IV S M R+ + R S+ ++LI G+SGTGKE+ AQ Sbjct: 123 LEENENLRRRLSDDDPTAPIVGASQAMCRVRDFIRQAGPSEATILIMGESGTGKELIAQG 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+AS R +P + +NC ALP LLESELFG+ +GAFTGAV ++ G FQ A GGTLFLDE Sbjct: 183 LHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARGGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P LQ KLLR LQER V PLG+ R + ++VRII+AT+RDL +A+ GEFREDL++R Sbjct: 243 IGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEFREDLFFR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + P L +R ED+P+LA LL + ++K +R+ S + + LM SWPGNVR+L Sbjct: 303 LNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVIS-DALVEQAL 381 NV+E+ + L+ S + D+L Q L Sbjct: 363 ENVLERALILSRSDTLGPDSLPSQVL 388 >UniRef50_C6NTB3 Two-component response regulator PilR n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTB3_9GAMM Length = 455 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 173/365 (47%), Positives = 243/365 (66%), Gaps = 1/365 (0%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L+VDD+P +++LLG+ L G V+ S AE L + L ++DLR+ + GMQL Sbjct: 12 LIVDDEPTIVELLGITLEGMGVEVLACHSLAEAFAALGKGPPSLCLTDLRLGDGSGMQLL 71 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-PA 127 +++++ P +PV ++TA+ S AV A + G F F+TKP++ L + + +A+ P Sbjct: 72 HKVRELYPQVPVAVITAYASAEGAVEAMRAGAFDFMTKPIELARLRRLVSEAIALGELPR 131 Query: 128 TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKP 187 E +V SP M+ L E+ RL+ +S+ V I G+SGTGKE+ A+AIH+ASPR K Sbjct: 132 ESVDLSERLVGESPGMVALRERVRLLGRSNAPVHIRGESGTGKELVARAIHDASPRREKA 191 Query: 188 FIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVK 247 FIA+NCGA+PE L+ESE FG +GA++GAV REGLF AA GGTLFLDEI ++P QVK Sbjct: 192 FIAVNCGAIPENLMESEFFGAEKGAYSGAVQRREGLFVAANGGTLFLDEIAELPLTTQVK 251 Query: 248 LLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 LLRVLQER VRPLG R+ I++R+I ATHRDL + + G FREDL+YR+NVV ++IP L Sbjct: 252 LLRVLQERVVRPLGGLREQSIDIRLICATHRDLRRMVEEGTFREDLFYRINVVPIEIPPL 311 Query: 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 ER EDIPLLA LL++ +RH + A+ L +PGNVR+L N++E+ +AL Sbjct: 312 RERREDIPLLAQTLLQRLCQRHGRPPANLAPAALAWLSNRDFPGNVRELENLLERALALQ 371 Query: 368 SSPVI 372 S P++ Sbjct: 372 SQPLL 376 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 180/450 (40%), Positives = 278/450 (61%), Gaps = 16/450 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + +L+VDD+ + + LG L +GY V G + L E+ ++I DL+M Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDAL---YQAI 117 MDG+Q+ +K+QP + V+I+TA+ ++ AV A + G + +L KP D + L Q I Sbjct: 61 GMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKI 120 Query: 118 --------DDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 ++A+ + A + R+R+ ++++SP M + E AR A+S+ ++L+ G+SG+G Sbjct: 121 VSQQSLVRENAVLRQALKQEYRFRD-LLSKSPAMQSVFELARTAARSNSTILVLGESGSG 179 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+A+H SPR PF+A++C AL E LLESELFGH +G+FTGA+S R+G F+AA G Sbjct: 180 KEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHG 239 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDE+GD+ LQ+ LLRVL+ER+ +G N I+++VRII+AT+RDL +A G+F Sbjct: 240 GTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKF 299 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL+YRLNV+ + +P L ER EDIPLL + + + + K + S DAM LM W Sbjct: 300 REDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVI--SDALVEQALEGENTALPTFVEARNQFELNYLRKLL 407 PGNVR+L NV+E+ + + VI SD + LE + P + + + E ++ +L Sbjct: 360 PGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASK--PGTLASLEEVEKRHVAAVL 417 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 GNV+ +AR+ G +R Y + ++ L Sbjct: 418 AHANGNVSQSARILGIDRVTLYNKMRKYGL 447 >UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM81_THASP Length = 465 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 198/462 (42%), Positives = 264/462 (57%), Gaps = 31/462 (6%) Query: 1 MSHKPA---HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDL 57 M+ +P H+L+VDD+ +LLG RL +GY + A G LR + V+L + D+ Sbjct: 1 MTDRPITDRHVLIVDDEELYRELLGGRLGRQGYRISEAGDGEGALRCIEGGGVELALIDI 60 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 +M MDG++L I+++ P V++LT HGSI A+AA + G F +LTKP L + Sbjct: 61 KMPGMDGIELLERIKQLAPRTEVVVLTGHGSIDSAIAAMKLGAFDYLTKPYQLTELDLVV 120 Query: 118 DDALEQSAPATD------------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 ALE+SA A R + +V SP LR+LEQ R A DV VL+ G+ Sbjct: 121 ARALERSALARRCDALSVEVARLRSRDDDGMVGDSPAWLRMLEQVRRAAALDVPVLLTGE 180 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SG GKE+ A A+H S R + ++ +NCG L +L+ESELFGH RGAFTGA ++REGLF+ Sbjct: 181 SGAGKEVVAAALHRWSRRAGEAYVPVNCGLLEGELVESELFGHKRGAFTGASADREGLFE 240 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A GTLFLDEIG++P Q KLLRVL + RPLG++ R+I+ATHRDL +A Sbjct: 241 LASAGTLFLDEIGELPLACQAKLLRVLDSGEFRPLGASAVRRTGARVIAATHRDLEALVA 300 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH--KPFVRAFSTDAMKR 343 G FR DL YRL+VV + +P L ER EDIPLL HLL QA RH P R A++R Sbjct: 301 AGRFRHDLLYRLDVVHIVVPPLRERREDIPLLVEHLLHQAVRRHPGTPAPR-VEPQALQR 359 Query: 344 LMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALE-GENTALPTFVEARNQFEL-- 400 L+ +WPGNVR+L NV+E+ + I A V+ L G T T R FE Sbjct: 360 LIDYAWPGNVRELRNVVERLLVFADGDRIDAARVDALLHPGARTVAST---GRTGFERIV 416 Query: 401 -------NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 YLR ++ GNV+ AA G R+ Y+LL H Sbjct: 417 PLAEMEQAYLRWVVDKLDGNVSAAATRLGIARSTIYRLLRPH 458 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 181/449 (40%), Positives = 273/449 (60%), Gaps = 14/449 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +LL+DD+P LK+L LT EGY V TA+ G GL L D++I+DL++ Sbjct: 1 MSTK-KRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G+ + +++ P +PV+++TA+GSI +AV A + G F++LTKPVD D L + + Sbjct: 60 DITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNV 119 Query: 121 LEQSAPATD---------ERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+S + +R+ +V +S M L VAQ + +VL+ G++GTGK Sbjct: 120 FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH A + PF+ I+C A+PE LLESELFGH+RGAFTGA ++G + A GG Sbjct: 180 ELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ K LR LQE+++ LG R ++VRII+AT+RDL +A G++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+S++IP L ER +DIP L NH L + ++ ++ + + M+ M WP Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELN--YLRKLLQ 408 GNVR+L NVIE+ V L I+ + + L+ + P+ + N E+ + + L+ Sbjct: 360 GNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPS-TDGVNLMEMEKRLIVQTLE 418 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 T+ N + AAR G +R + + H L Sbjct: 419 KTEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 189/450 (42%), Positives = 270/450 (60%), Gaps = 37/450 (8%) Query: 25 LTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILT 84 L EG+ VV + EGL +D+V+ D++M + GM L I+ +P + VI++T Sbjct: 26 LQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVEVIMMT 85 Query: 85 AHGSIPDAVAATQQGVFSFLTKP----------VDKDALYQAIDD---ALEQSAPATDER 131 A ++ AV A + G + +LTKP V K A +A+ D ALE++ T Sbjct: 86 AFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL--TVRS 143 Query: 132 WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAI 191 E ++ +S M + + V+ S +VLI G+SGTGKE+ A+AIH S R KPF+A+ Sbjct: 144 QFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAV 203 Query: 192 NCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRV 251 NC AL E LLESELFGH +G+FTGA N++GLF+AA+GGT+FLDEIGD+P QV+LLRV Sbjct: 204 NCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRV 263 Query: 252 LQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERT 311 LQE +V+ +G+N + ++VR+I+ATH DL +A +G+FREDL+YRLNV+++ +P L +R Sbjct: 264 LQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRP 323 Query: 312 EDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 ED+PLLA+H L+ A + V S AM+ L W GNVR+L NVIE+ V LT + V Sbjct: 324 EDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEV 383 Query: 372 ISDALVEQALEGENTA--------------LPTFVEAR----NQFELNYLRKLLQITKGN 413 I VE G +A LP + +A+ FE YL LL+ N Sbjct: 384 ID---VEDLPPGFQSAPQPDSTVEVFSLAHLP-YAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFK 443 V+ AAR AG +R+ F +LL ++E+ K Sbjct: 440 VSSAARAAGVDRSNFRRLLKQYEVAGRSMK 469 >UniRef50_Q094U7 Helix-turn-helix, Fis-type n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q094U7_STIAU Length = 430 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 196/423 (46%), Positives = 259/423 (61%), Gaps = 31/423 (7%) Query: 53 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 112 ++ DLR+ + DG+++ A+ ++ +PV++LTAHG+I AV A +G + FLTKP Sbjct: 1 MVLDLRLGDSDGLEVLAQARERALDLPVVVLTAHGTIETAVEAMSRGAYGFLTKPFQDHE 60 Query: 113 LYQAIDDALEQSA---PATDERW------REAIVTRSPLMLRLLEQARLVAQSDVSVLIN 163 L Q + ALE+SA D R RE + S + R+ E VA S+ SVL+ Sbjct: 61 LVQKLRHALERSALRREVADLRRIVAGGPRERLSGSSAAITRVREDIARVAPSEASVLLL 120 Query: 164 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGL 223 G+SGTGKE+ A+ +H S R PF+AINCGALP +LLESELFGH GAFT A REGL Sbjct: 121 GESGTGKELAARLLHALSRRAEGPFVAINCGALPPELLESELFGHVEGAFTAATQAREGL 180 Query: 224 FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKA 283 F AA GGTLFLDE+G+ PA +Q+KLLRVLQER+ LGSN +++VR+++AT+RDL + Sbjct: 181 FGAARGGTLFLDEVGETPARVQIKLLRVLQERRYTRLGSNTGEEVDVRVVAATNRDLREE 240 Query: 284 MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 + FREDLYYRL VV + +P L ER EDIP+LA L +AA R+ V A++ Sbjct: 241 VEERRFREDLYYRLCVVPIVMPPLRERAEDIPVLAQLFLERAATRNGLRVPRMDGKALQA 300 Query: 344 LMTASWPGNVRQLVNVIEQCVAL-----------------TSSPVIS-----DALVEQAL 381 L WPGNVR+L N++E V L + SP S Sbjct: 301 LQAYPWPGNVRELANIMEAAVLLSPTEELRGEHLMHFVQRSQSPAPSIGGNPAVPAPPVP 360 Query: 382 EGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 G +T LPT EAR+ FE YL +L+ + GNV+ AARMAGRNRT+FY+LL RH L A D Sbjct: 361 PGADTPLPTLREARDAFERGYLIDVLRRSGGNVSAAARMAGRNRTDFYELLRRHGLSAGD 420 Query: 442 FKE 444 FK+ Sbjct: 421 FKD 423 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 186/449 (41%), Positives = 275/449 (61%), Gaps = 20/449 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+D+ L +++ L+L S G+ V A S EGL++++R D+V++DL++ MDG + Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDR--ADMVLTDLKLPNMDGQEF 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + I++ +PV+++TA G++ AV A + G FL KP D L Q +D ALE A Sbjct: 63 LSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVRALR 122 Query: 128 TDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R +A IV RSP M + V S +VL+ G+SG GK++ A+AI Sbjct: 123 EENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAI 182 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR +P + INC A+PE L+ESELFG+ +GAFTGA + + G F+ A+ GT+FLDEI Sbjct: 183 HFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEI 242 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GD+PA +QVKLLRVLQER+ LGSN I+VR+++AT++DL A+ +G FREDLYYRL Sbjct: 243 GDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRL 302 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV L IP L ER DIP LANH + + A V + + M++LM WPGNVR+L Sbjct: 303 NVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVRELE 362 Query: 358 NVIEQCVALTSSPVI--SDALVE-----QALEGENTALPTFVEARNQFELNYLRKLLQIT 410 NVIE+ + + + + D +E +A +N LP + + +Q+E +R+ L+ Sbjct: 363 NVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGL-SLDQYEQEIIREALRRA 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDA 439 GN + AAR+ G R L++ L++ Sbjct: 422 DGNKSQAARLLGLTRNALRYRLTQMGLES 450 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 192/461 (41%), Positives = 266/461 (57%), Gaps = 40/461 (8%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS ++L VDD+P +L+LL + L GY +TA G E L V+N ++VD V++DL M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+QL E++K +PVII+TA G I A+ A + G ++ +P D L AI A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LEQSAPATDERW-RE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 L S + R+ RE ++ SP M L E R VA +VL+ G++GTGKE+ Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH ASPRN+ F+A+NC A+P ++LESELFGH +GAFTGAV R G F+ A+GGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ +MP LQ KLLR LQE + LG NR I +++R+++AT+R+ A+ G+ REDL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV + +PAL R DI LLA H L A+R S A++ LM WPGNV Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFL---AKRRVD----ISAQAVQVLMQYDWPGNV 353 Query: 354 RQLVNVIEQCVALTSSPVI------------SDALVEQALEGENT----------ALPTF 391 R+L NV+E+ ++ + I + ++ G N LP Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNA 413 Query: 392 VEARNQFELNYLRKLLQITKGNVTHAARMAG-RNRTEFYKL 431 VE Q E + K L T GN + AA++ R+ +YKL Sbjct: 414 VE---QLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKL 451 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 179/442 (40%), Positives = 259/442 (58%), Gaps = 15/442 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + + L + L EGY V TAE G G+ + + +DL+I+DL+M M G + Sbjct: 5 ILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGELV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + V P +P+IILT HG++ +AV A +G + FLTKP+D + L + AL+ Sbjct: 65 LQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNRELI 124 Query: 128 TDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 R E IV SP M ++ + + A S SVLI G+SG GKE+ A AI Sbjct: 125 VQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAI 184 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 HN SPR +KP I ++C + E +LESELFGH RGAFTGAV+ +G F+ A G++FLDEI Sbjct: 185 HNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEI 244 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q+KLLRVLQER +G I ++VR+ISAT+R+L + + R FREDLYYRL Sbjct: 245 GEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRL 304 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + +PAL ER ED+PLL L++ AE + + + A L WPGN+RQL Sbjct: 305 NVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQLR 364 Query: 358 NVIEQCVALTSSPVISDALVEQALE--GENTA--LPTFVEARNQFELNYLRKLLQITKGN 413 N IE V ++S PVI + + + GE ++ +P V + E + + L+ KGN Sbjct: 365 NCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDA-EKEIILQTLEAQKGN 423 Query: 414 VTHAARMAGRNRTEFYKLLSRH 435 + A + G R Y L ++ Sbjct: 424 KSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 267/452 (59%), Gaps = 18/452 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + K LG L EGY V T +SG E +R+L+ + +V+ D+ + +DGM++ Sbjct: 5 ILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGMEV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 I+ + P +PV++++ HG+I AV AT+ G F F+ KP+ + + + AL+ S Sbjct: 65 LKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSRLE 124 Query: 128 TDERWREAIVTR-------SPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + + + R SP ++ L+E +VA ++ +LI G++GTGKE+ A+AIH Sbjct: 125 EENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHRQ 184 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R KP + +NC A+PE+L+ESELFGH +GAFTGA + G F A GT+FLDE+ DM Sbjct: 185 SKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADM 244 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q K+LR+LQE+K +G N+ I ++VR+++AT++DL K M G FR+DL+YRLNV+ Sbjct: 245 SLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVI 304 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 LK+P L R EDIPLLA L A + + DA+ LM SWPGNVR+L N I Sbjct: 305 PLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELKNFI 364 Query: 361 EQCVALTSSPVIS----------DALVEQALE-GENTALPTFVEARNQFELNYLRKLLQI 409 E+ +T+S VI+ VE E G +F EA+ FE Y+ + L+ Sbjct: 365 ERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRKLRE 424 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 GN++ A G R+ +K + + L++ + Sbjct: 425 FDGNISKTAESIGLERSNLHKKIKAYGLESKN 456 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 327 bits (837), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 186/434 (42%), Positives = 259/434 (59%), Gaps = 20/434 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLVDDD G +L + L GY V+TA G E L L + K+DL++ D++M +DG+ Sbjct: 4 ILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLAT 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 + + + +PVI++TA S+ +A+ A ++G F ++TKPVD D L+ AI AL Q Sbjct: 64 LSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKISP 123 Query: 124 -----SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + P D ++ E I +P M L Q L+A SD ++L++G+SGTGKE+ A AIH Sbjct: 124 PLSPGTEPQADSKFPEIIGESAP-MQELFSQISLIAPSDATILLSGESGTGKELVATAIH 182 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R I INC AL E LLESELFGH GAFTGA ++GLF+ A+ GTLFLDEIG Sbjct: 183 RHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIG 242 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DM QVK+LRVLQE + +G N I +NVRII+A+HR+L K + G FR+DL++RL+ Sbjct: 243 DMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLS 302 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV L +PAL ER DIP+LAN L ++++ ++ FS +A+ LM WPGN+R+L N Sbjct: 303 VVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELEN 362 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAA 418 IE+ V L L EQ E P F R+ EL+ L + K + A Sbjct: 363 SIERGVIL--------CLGEQITAHELP--PQFFRNRSPGELSSRDTLRDVEKRAIQQAL 412 Query: 419 RMAGRNRTEFYKLL 432 +G N++ K L Sbjct: 413 ARSGFNKSATAKQL 426 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 327 bits (837), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 175/427 (40%), Positives = 264/427 (61%), Gaps = 8/427 (1%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LL+DD+ +LK++ L+ G+ V+TA+S E L ++ +EK DL+ISD +++ G+++ Sbjct: 4 ILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLEI 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +K P +I+TA+GSI AV A ++G ++ KP+D D L + ID +++ Sbjct: 64 LESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQENF 123 Query: 128 TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKP 187 E E I+ +S M L ++ +V++S+ S+LI G+SGTGKE+ A+AIH S R ++P Sbjct: 124 DVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQP 183 Query: 188 FIAINCGALPEQLLESELFGHARGAFTGAVSNRE-GLFQAAEGGTLFLDEIGDMPAPLQV 246 FI INC A+P +L E+ELFGH +G+FTGA SNRE G + A GTLFLDEIG+MP +Q Sbjct: 184 FIPINCSAIPNELFENELFGHEKGSFTGA-SNREIGKIELAGEGTLFLDEIGEMPLFMQA 242 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRVLQER+ +G I + R+ISAT+R+L + + EFREDL+YR+NV+ LKIP Sbjct: 243 KLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPP 302 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L ER EDIPLL + + ++ + V DA++ LM WPGNVRQL N+IE+ V L Sbjct: 303 LRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVL 362 Query: 367 TSSPVISDALVEQALEGENTALPTFVEARNQ------FELNYLRKLLQITKGNVTHAARM 420 +I+ + ++ + + + + N E N + K+LQ N T AA+ Sbjct: 363 CQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQTRAAQK 422 Query: 421 AGRNRTE 427 G +R + Sbjct: 423 LGISRKQ 429 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 326 bits (836), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 184/471 (39%), Positives = 268/471 (56%), Gaps = 55/471 (11%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAE----GLRVLNREKVDLVISDLRMDEMD 63 +L+VD+D + + LT GY A +GAE L ++ E D++I++L MDE+D Sbjct: 17 VLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMDEVD 76 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA--- 120 G+++ + P VI+LT H SI A+ A Q G ++LTKP+D L QA+D A Sbjct: 77 GLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRASSR 136 Query: 121 -------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 E S ++ E ++ SP M RL+E+ R VA +D +VLI G+SGTGKE+ Sbjct: 137 IRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKELV 196 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH S R +KPF+ +N ALPE +LESELFGH GAFTGA + R G F+ A GGTLF Sbjct: 197 ARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYANGGTLF 256 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+G+MP Q+KLLRVL+ER++ LG+N +I INVR+++AT+ DL + +G FR+DL Sbjct: 257 LDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFRKDL 316 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 Y+RL+VV++ +P L++R DIP L +H L+Q AER K + + + LM +WPGN+ Sbjct: 317 YFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAYAWPGNI 376 Query: 354 RQLVNVIEQC---------------------------VALTSSPVISDALVEQALEGENT 386 R+L NV+E V L +P +D L+ ++L Sbjct: 377 RELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRSL----- 431 Query: 387 ALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N E Y+ + L++T G AA + G Y+ + +EL Sbjct: 432 ---------NDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL 473 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/378 (43%), Positives = 247/378 (65%), Gaps = 10/378 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ G++ L EG V+ A GAEGL +L + +V ++++DL M GM L Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + V P V+++TA+G++ AV A ++G + F+TKP+ + + + + +ALE+ + Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 128 TD---------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + E+ A++ S R ++ A SD +VL+ G+SGTGKE+ A+++H Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R KPFIAINC A+PE +LE ELFG+ +GAFTGA S+REG F+AA GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 239 DMPAPLQVKLLRVLQERKVRPL-GSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 +MP +QVKLLRVLQE ++ L GS R I++R+I+AT+ +L KA+ G FREDLYYRL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+S+ +P L ER +DIPLL H L+ A+++ F+ + DA+ RL +WPGNVR+L Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 358 NVIEQCVALTSSPVISDA 375 N +E+ V L+ V+ +A Sbjct: 378 NAVERAVVLSRGEVLDEA 395 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 176/455 (38%), Positives = 269/455 (59%), Gaps = 24/455 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM-DEMDGMQ 66 +L+VDD+ G K+L LT G+ V TA SG E L + L++ D+++ +DG++ Sbjct: 6 ILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGSIDGLE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ ++I+TA+G I AV A ++G F+++TKP D + I+ +EQ+ Sbjct: 66 LLQRAKEMNNA-SILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMIEQNKI 124 Query: 127 ATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + R+ I+ S + ++++ VA S +VLI G+SGTGKE+ A+A Sbjct: 125 IEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKELVARA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH R K F+ INC L E LLESELFGH RGAFTGA+ +++GLF+ A+GGTLF+DE Sbjct: 185 IHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGTLFMDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+P P+Q K+LRVLQE + PLG +++VRII+AT++ L K + EFREDLYYR Sbjct: 245 IGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+++K+P L ER EDIPLL H + + ++ ++ S + L WPGNVR+L Sbjct: 305 LNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDAL---VEQALEGENTALPT-----FVEARNQ----FELNYLR 404 N IE+ V LT+ P+I + + + +G N L + EAR + F Y+ Sbjct: 365 ENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKALDVFNTKYVM 424 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++ GNVT+AAR R ++L ++ + + Sbjct: 425 NIINKNSGNVTNAARECKIERQYLQRMLKKYAIKS 459 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/455 (37%), Positives = 275/455 (60%), Gaps = 21/455 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKV-DLVISDLRMDEM 62 K +L+V+D + + L + EGY V SG ++ L+ V DLV++DL+M ++ Sbjct: 3 KNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKV 62 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G+++ ++ P VI++TA+G+I AV A ++G + ++TKP + + +ALE Sbjct: 63 NGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALE 122 Query: 123 QSA---------PATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + E+++ E I+ S +M+ +L+ V++++ +VLI G+SGTGKE+ Sbjct: 123 KKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKEL 182 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH PR+ PF+ INCGALPE L ESELFGHA+G+FTGAV + GLF A GT+ Sbjct: 183 IARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTI 242 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+ A QVKLLR LQ+ ++R +G N+ I ++VRII+AT+ +L +A+ +G FR+D Sbjct: 243 FLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKD 302 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YR+NV+ + +P L ER EDIPLL N+ L ++ K R FS AM L+ WPGN Sbjct: 303 LFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGN 362 Query: 353 VRQLVNVIEQCVALTSSPVI--------SDALVEQALEGEN--TALPTFVEARNQFELNY 402 +R+L N++E+ VAL+ + VI + V E T + VE ++ E N Sbjct: 363 IRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKNA 422 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + + GN T +++ G + T ++ + ++++ Sbjct: 423 IVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKI 457 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/469 (39%), Positives = 282/469 (60%), Gaps = 30/469 (6%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYS--VVTAESGAEGLRVLNREKVDLVISDLRMD 60 H+ +L+VDDD +L +L +RL + + V T SG L L+R + D++ +DLRM Sbjct: 10 HEKPLVLVVDDDAEMLTML-VRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMP 68 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM L ++++ P + VI++T +G+I AV + ++G + F+ KP D++ + +++ Sbjct: 69 GLDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERC 128 Query: 121 LEQSAPATDERW-REAIVTRSPL---------MLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + R+ +E + T+ M + + R VA ++V+VLI G+SGTGK Sbjct: 129 LERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGK 188 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ +A+H S R +KP + +NC ALP ++LESELFG+ +GAFTGA ++ G F A+G Sbjct: 189 ELAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGS 248 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDEIGDMP LQ KLLRVLQE++V PLG + ++VR++++T++DL +A+G FR Sbjct: 249 TLLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFR 308 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL YRLNVV++ IP+LAER EDIPLLA H L++ A + F+ + L+ W Sbjct: 309 EDLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWK 368 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA-LVEQALEGEN-----------TALPTFVEARNQ- 397 GN+R+L N +++ V LTS P I+ A L E E T LP + EA+ + Sbjct: 369 GNIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLP-YNEAKREV 427 Query: 398 ---FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F YL + + GNVT AA+ +G R F +LL +L A F+ Sbjct: 428 LTSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLRVFDLKAESFR 476 >UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=2 Tax=Sulfurihydrogenibium RepID=C1DWP8_SULAA Length = 468 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 168/463 (36%), Positives = 273/463 (58%), Gaps = 24/463 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 ++L+VDD+ +L L EGY V + + E + ++ + DL+ISDL+M +M G Sbjct: 5 GYILIVDDEEDILVSFKEILEDEGYKVDISPNPKEAVEMVKQNDYDLIISDLKMPQMTGD 64 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD--KDALYQAIDDALEQ 123 Q EI+K I+LTA+G++ AV + G F++++KP+D D + I +A+E Sbjct: 65 QFLKEIRKFNNVASFIVLTAYGTVETAVDCMKHGAFNYISKPIDFNDDRTWSMIKEAIEL 124 Query: 124 SAPATDERWR-------------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + + + E I+T +PLM +L+ + +A D +VLI G+SG GK Sbjct: 125 AKYKKNTFFYKNYLSTLKNSSDIEGIITVNPLMKEILDYLKKIANFDFTVLIYGESGVGK 184 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+FA+AIH S R +K F+ INC + + ++ESE FG +G FTGA ++R G+ + A+GG Sbjct: 185 ELFAKAIHQLSNRRNKVFLPINCATISKDVMESEFFGVKKGVFTGADTDRPGILELADGG 244 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEI +MP LQ K LR LQE++VR +G ++VR+I+AT++DL + + +FR Sbjct: 245 TVFLDEISEMPLDLQAKFLRFLQEKEVRRIGDTVSKKVDVRVIAATNKDLKQLVKEEKFR 304 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RL + ++IP L ER EDIP+LA H L + ++++ ++ F+ +A++ L+ W Sbjct: 305 EDLYFRLEGIKIEIPPLRERKEDIPVLAYHFLEEFNKKYQTDIKGFTEEALQLLVNYHWE 364 Query: 351 GNVRQLVNVI-EQC-VALTSSPVISDALVEQALEGENTALPTFVEAR-------NQFELN 401 GNVRQL NV+ E C +AL I + + + G++ + + F Sbjct: 365 GNVRQLENVVREACIIALAKKEYIDVSCLPSYISGQDNSKAMIFDYNLAKKLNDQAFTTK 424 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 YL+ LL TKGN++ AA++A R KLL ++ +D ++F++ Sbjct: 425 YLKNLLAFTKGNISKAAKLANIERQSLQKLLKKYGVDPSEFRK 467 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 181/435 (41%), Positives = 260/435 (59%), Gaps = 22/435 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K +L+VDDD L ++L L EGY V+TA SG EGLR+ LV++DL+M M Sbjct: 7 KTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMG 66 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G QL E+++ P VI++TA G++ AV A + G + F+TKP +++AL + AL+ Sbjct: 67 GFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDM 126 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + R +I+ SP M + VA +D +VLI G+SGTGKE+ Sbjct: 127 QGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELV 186 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIHN S R + PF+AINC A+P LLESELFGH +GAFTGAV ++EG F+ AE GTLF Sbjct: 187 ARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+G++P LQ KLLR LQE++V+P+G I ++VR+++AT+ DL +A+A G FREDL Sbjct: 247 LDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRL+V+ + +P L ER EDIPLL H A +H FS + + + WPGNV Sbjct: 307 FYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGNV 362 Query: 354 RQLVNVIEQCVALTSSPVIS-DALVEQALEGEN-------TALPTFVEARNQFELNYLRK 405 R+L N +E+ + + ++ I D L E+ G + LP + Q E + + Sbjct: 363 RELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVVE 422 Query: 406 LLQITKGNVTHAARM 420 L+ N + AAR Sbjct: 423 ALERNNWNQSSAARF 437 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 323 bits (829), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 175/384 (45%), Positives = 242/384 (63%), Gaps = 8/384 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L VDDDP +L++L +RL S GY VVTA GAE L VL + V LVISD+RM MDGM+L Sbjct: 11 ILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMDGMRL 70 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 E+++ +P+I LTAHGSIP AV A + G +LTKP D L + + ++A Sbjct: 71 LEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFARAAGN 130 Query: 126 PATDER--WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 AT ER +V +S M L VA DV+VL+ G+SGTGKE+ A IH SPR Sbjct: 131 DATRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLIHRRSPR 190 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 + P + ++CG+ P LLESELFGH +G+FT AV +++GL + A GTLFLDEIG++ Sbjct: 191 KNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEIGNISTE 250 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 +Q++LLR L+ ++R +G R+I ++ R+I+AT+ D+ + +A G FREDL YRL VV++ Sbjct: 251 MQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRLKVVTIN 310 Query: 304 IPALAERTEDIPLLANHLLRQ--AAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 +P L ER EDIP+LA H RQ AA+ P + M LM WPGNVRQL N +E Sbjct: 311 VPPLRERREDIPILAEHFTRQFCAAQGMPPVT--VPAETMAYLMAYPWPGNVRQLRNALE 368 Query: 362 QCVALTSSPVISDALVEQALEGEN 385 V L + V++ ++ L G+ Sbjct: 369 AGVVLCTGGVLAPKDLQLPLAGKG 392 >UniRef50_A3ERY0 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERY0_9BACT Length = 471 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 188/465 (40%), Positives = 273/465 (58%), Gaps = 23/465 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 +S +P+ +L+VDDDP +LK + E Y V+TA+S + + + REK + I DL + Sbjct: 9 LSFQPS-ILIVDDDPVVLKQMTWLFKGE-YPVLTADSASSAIEIFVREKPPVAILDLSLG 66 Query: 61 E---MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 + DG+ L + P IIL+ P A+ A + G + L K VD + L + + Sbjct: 67 KDSGQDGIDLLRFFAEADPHFHGIILSGSIDRPRALEAVRLGAYDLLDKSVDPEELKRVV 126 Query: 118 DDAL-------------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 164 A E S A + IVT++P M +L + ++ +DVSVLI G Sbjct: 127 GRACNRALLSRTPARPKELSPSAEESNPFPGIVTKNPGMKEMLRILQKISATDVSVLITG 186 Query: 165 QSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF 224 +SGTGKE+FA+AIH SPR + PF+AINCGA+PE LLESELFGH +GAFTGA +R G F Sbjct: 187 ESGTGKELFARAIHERSPRKNGPFVAINCGAIPESLLESELFGHEKGAFTGATESRAGKF 246 Query: 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAM 284 +AA GTLFLDE+ ++ LQVKLLRVLQ++ V +GS ++VRII+AT++ L + M Sbjct: 247 EAAHHGTLFLDEVAELQIELQVKLLRVLQDKIVERVGSRNGKQLDVRIIAATNQPLNELM 306 Query: 285 ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKR 343 ARG FREDLYYRL+V+S +P L +R ED+ LLA H L + E +KP V F+ + + Sbjct: 307 ARGRFREDLYYRLSVMSFHLPPLRDRGEDVLLLAQHFLEKFRTEYNKPQVIDFNRECLDV 366 Query: 344 LMTASWPGNVRQLVNVIEQCVALTSSPVIS----DALVEQALEGENTALPTFVEARNQFE 399 + WPGN+R+L N I++ V + S ++ D ++ GE+T AR + E Sbjct: 367 IRKHDWPGNIRELENRIQRAVIIASGKWVTREDLDIGLDSRKHGESTLSMNLTGAREEAE 426 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L + + +GN++H ARM G +R + L+ +H L +FKE Sbjct: 427 KRMLVEAFEQARGNISHVARMIGTSRPTVHALIKKHGLSPKEFKE 471 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 170/444 (38%), Positives = 276/444 (62%), Gaps = 13/444 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ LK L L EGY V +SG E L+++ +++ D+V++D++M+++DG ++ Sbjct: 4 VLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFEI 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------- 120 + + + P VI++T + ++ +AV A +QG F ++ KP D + + I +A Sbjct: 64 LRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKLK 123 Query: 121 --LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 ++Q D + I+T++ ML+LLE AR +A +D +VLI G+SGTGKE+FA+ IH Sbjct: 124 KEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIH 183 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R PF+A+NCGA E+LL +ELFGH +GAFTGA + ++GL + A G+LFLDEI Sbjct: 184 LNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEIT 243 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 +M +Q KLLRV+QER+ LG+ I ++VR I+AT+RD+ + + G+FREDLYYRLN Sbjct: 244 EMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLN 303 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV+++IP L ER +DIPLL + ++ + K + S +A+ L+ +PGNVR+L N Sbjct: 304 VVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELEN 363 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEAR----NQFELNYLRKLLQITKGNV 414 +IE+ V L +S I + Q L+ + T E + + E Y++ +L+ N Sbjct: 364 IIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGNNK 423 Query: 415 THAARMAGRNRTEFYKLLSRHELD 438 T AA++ G +R ++ L + ++ Sbjct: 424 TVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 320 bits (821), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 165/383 (43%), Positives = 240/383 (62%), Gaps = 11/383 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K AH+L++DD+ L +L L EGY+V L L+ +VD+V++D++M Sbjct: 1 MSEK-AHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G Q+ ++K P +PV+I+TA GSI AV + G F ++TKP D L +I +A Sbjct: 60 KVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNA 119 Query: 121 LEQS---------APATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E + ++R+ IV RS + +L A S +VLI G+SGTGK Sbjct: 120 VELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH SPR PF+++NC AL +LESELFGH +G+FTGAV+ R G F+ A+GG Sbjct: 180 ELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEI ++ LQVKLLRVLQER+ +G +I++++R+++AT++DL + +G FR Sbjct: 240 TLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DLYYRLNVV + +P L ER EDIPLL H + + + + FST+A+ L WP Sbjct: 300 DDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVIS 373 GN+RQL NV+E C+ L VI+ Sbjct: 360 GNIRQLENVVESCLVLVPGTVIN 382 >UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Aquificales RepID=B2V7B6_SULSY Length = 466 Score = 320 bits (820), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 167/463 (36%), Positives = 277/463 (59%), Gaps = 24/463 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 ++L+VDD+ LL L EGY V + V+ DL+ISDL+M + G Sbjct: 4 GYILIVDDEEDLLVSFKEILEEEGYRVDIESDPLNAVEVVKTNDYDLIISDLKMPNLAGN 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD--KDALYQAIDDALEQ 123 + EI+K + IILTA+G++ AV + G + ++ KPVD + +++ I++A+++ Sbjct: 64 EFLKEIRKYNNFISFIILTAYGTVDTAVECMKNGAYDYIAKPVDFNDEKIWKLIENAVKK 123 Query: 124 SAPATDERWREA-------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + + + ++ I+T +PLM +++ + +A D ++LI G+SG GK Sbjct: 124 TKAIKESEYYKSQLNVIKSRDKFKNIITINPLMQEVIDYSIKIANFDFTILIYGESGVGK 183 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+FA+AIH AS R + F+ +NC + + ++ESE FG +G +TGA ++R G+ + A+GG Sbjct: 184 ELFAKAIHEASQRRNNVFLPVNCATISKDVMESEFFGAKKGVYTGAENDRPGILELADGG 243 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEI ++P LQ K LR LQ+++VR +G ++VR+I+AT++DL + + +G+FR Sbjct: 244 TIFLDEISELPLDLQAKFLRFLQDKEVRRIGDVSAKKVDVRVIAATNKDLKELVNQGKFR 303 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL + ++IP L ER EDIP+LA + L + +++ V+ FS DA++ L+ SWP Sbjct: 304 EDLYYRLEGIKIEIPPLRERKEDIPVLAYYFLEEFNKKYNADVKGFSKDALEALINYSWP 363 Query: 351 GNVRQLVNVI-EQC-VALTSSPVIS-DALVEQ--ALEGENTALPTFVEAR----NQFELN 401 GNVRQL NV+ E C +A I + L ++ +E ++ + + A+ F Sbjct: 364 GNVRQLQNVVNEACIIAFAKGQFIELNHLPKEITGIEDKHAMIFDYNLAKKMNDTNFTTK 423 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 YLR LL TKGN++ AA++A R KLL ++ +D +F++ Sbjct: 424 YLRNLLSFTKGNISQAAKLANIERQSLQKLLKKYNVDPQEFRK 466 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 320 bits (819), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 181/446 (40%), Positives = 265/446 (59%), Gaps = 13/446 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD + + L G+ V AE GA + + E D+V++DLRM +DGM++ Sbjct: 31 VLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGMEV 90 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 +Q+ P VI++TA+G+I AV A ++G + FL KP + + + ALE+ Sbjct: 91 LRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRRLL 150 Query: 124 ---SAPATDERWR---EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + A + R R E IV RSP M +L++ VA +D +VL+ G+SGTGKE+ A+A+ Sbjct: 151 GEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVARAL 210 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R+ KPF+ +NC A+ + LLESELFGHARGAFTGA R G+F+ A GGTLF+DEI Sbjct: 211 HVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEI 270 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+ Q KLLR LQE ++R +G + + +NVRII+AT++DL +A+A FREDL+YRL Sbjct: 271 GETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRL 330 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV L+IP L ER ED+PLLA H L++ +R R + +A+ L+ WPGNVR+L Sbjct: 331 NVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGS-ERVLTPEAVASLVAHDWPGNVRELE 389 Query: 358 NVIEQCVALTSSPVI--SDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 N+IEQ AL + I +D +E A T +A E + L ++ Sbjct: 390 NIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALARCGNDLG 449 Query: 416 HAARMAGRNRTEFYKLLSRHELDAND 441 AR G + T ++ + R ++A + Sbjct: 450 RVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 165/378 (43%), Positives = 244/378 (64%), Gaps = 17/378 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L L+ GY V AE+G L ++ E DLV++D+RM EMDG+ + Sbjct: 9 ILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMDGIAM 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 +IQ V+PG+PV+I+T + ++ AV A +QG ++ KP + + + I + Q Sbjct: 69 LQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQQPRP 128 Query: 124 ----------SAPA--TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 S P TDE R ++ R LRLLE+AR VA S +VL+ G+SGTGKE Sbjct: 129 AAVAPAAETGSPPPGRTDEGSR-TVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKE 187 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV ++G F+ A GGT Sbjct: 188 VFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGT 247 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL +A+ G FR+ Sbjct: 248 LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQ 307 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV+ +++P+L ER +DI LLA+ + + + R+ ++ S A +R + WPG Sbjct: 308 DLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFLDYDWPG 367 Query: 352 NVRQLVNVIEQCVALTSS 369 NVR++ N++E+ V L++ Sbjct: 368 NVREMENLLERGVLLSNG 385 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 181/456 (39%), Positives = 271/456 (59%), Gaps = 25/456 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 +S +L+VDD+ +L L + L +EG+ TA G +G+ L + D+V++D+RM Sbjct: 5 LSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMP 64 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALY------ 114 ++ G+Q+ + ++V P +PVI++TA ++ AV A +G F ++ KP D L Sbjct: 65 DVSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRA 124 Query: 115 ------QAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 +A + L+Q + + + RS L +L A VA +D +VLI G+SGT Sbjct: 125 AEHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGT 184 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+ IH+ S R F++INCGALPE LLESELFGH +G+FTGAV ++ GLF AA Sbjct: 185 GKEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAAN 244 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GT FLDEIG+ QVKLLR LQ+R+V P+G+ + ++ R+++AT+RDL + + RG Sbjct: 245 HGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGG 304 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTA 347 FR DL+YRLNV+++ +P L +R +DIP+LA L R A RH+ + + A+ LM Sbjct: 305 FRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEE-QKVLNEGALDALMAY 363 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVIS-DALVE-------QALEGENTALPTFVEARNQFE 399 WPGNVR+L N +E+ V L S IS DAL E + L E + +EA E Sbjct: 364 GWPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEA---IE 420 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 Y++ +LQ GN + AA M G + + Y+ L+R+ Sbjct: 421 RAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKLARY 456 >UniRef50_P13632 C4-dicarboxylate transport transcriptional regulatory protein dctD n=12 Tax=cellular organisms RepID=DCTD_RHIME Length = 460 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 189/454 (41%), Positives = 266/454 (58%), Gaps = 17/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS P+ + L+DDD L K + L G++V + S E L L+ + +VISD+RM Sbjct: 1 MSAAPS-VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ LF +I + P +P+I++T HG IP AV A Q G + F+ KP D L Q+ A Sbjct: 60 GMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRA 119 Query: 121 LEQSAPATDER-WREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ + R R A ++ ++P+M RL + + +A +DV VL+ G++G+GK Sbjct: 120 EEKRRLVMENRSLRRAAEAASEGLPLIGQTPVMERLRQTLKHIADTDVDVLVAGETGSGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A +H S R + F+A+NCGALPE ++ESELFGH GAFTGAV R G + A GG Sbjct: 180 EVVATLLHQWSRRRTGNFVALNCGALPETVIESELFGHEPGAFTGAVKKRIGRIEHASGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEI MP QVK+LRVL+ R++ PLG+N +++R+++A DL ARG+FR Sbjct: 240 TLFLDEIEAMPPATQVKMLRVLEAREITPLGTNLTRPVDIRVVAAAKVDLGDPAARGDFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNVV+L IP L ER +DIPLL +H L +A+ER V A S L T SWP Sbjct: 300 EDLYYRLNVVTLSIPPLRERRDDIPLLFSHFLARASERFGREVPAISAAMRAYLATHSWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L + E+ VAL + + A LP +E ++E + L++ L Sbjct: 360 GNVRELSHFAER-VALGVEGNL--GVPAAAPASSGATLPERLE---RYEADILKQALTAH 413 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 G+V + G R FY L RH ++ D+ E Sbjct: 414 CGDVKETLQALGIPRKTFYDKLQRHGINRADYVE 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 183/455 (40%), Positives = 264/455 (58%), Gaps = 22/455 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + ++L +G+ A +G L + D+V+ D+RM EMDG++ Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE----- 122 E++ + PVI++TA+ + AV A + G F ++ KP D D L + AL+ Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A +T +W I+T SP M+ + + +A S SVLI+G+SGTGKE+ A+A Sbjct: 127 KEIRHLHQALSTSWQWGH-ILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R PFI +NC ALPE LLESELFGH +GAFTGA + R+GLF+ A GTL LDE Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+MP LQ KLLR+LQER+ +G ++ I +++RII+AT+RDL + G FREDL+YR Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ L +P L +R EDI LLANH L++ + ++ + AM L SWPGN+R+L Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365 Query: 357 VNVIEQCVALTSSPVI-SDALVEQALE-----GENTALPT----FVEARNQFELNYLRKL 406 NVIE+ V + S P+I S+ L Q + GE P E + E + ++ Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEV 425 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 L+ +GN T A M G +R L + +D D Sbjct: 426 LEQQEGNRTRTALMLGISRRALMYKLQEYGIDPAD 460 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 175/442 (39%), Positives = 263/442 (59%), Gaps = 27/442 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L++DD+ L K+L L +G+ V AE+G +GL ++ D+V++DL M ++ GM Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGM 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ I+ P +PVII+TAHG++ AV A + G F ++TKP D+ L + A + + Sbjct: 62 EVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNE 121 Query: 126 PAT-----DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 A D + R AI+ S + + + VA + +VLI G+SGTGKE+ A A+H A Sbjct: 122 SARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGA 181 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R KPFI INC A+P LLESELFG+ RGAFTGAV+++ G F+ A+ GTLFLDEIG++ Sbjct: 182 SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLLR +QE + +G + ++VR+++AT+RDL + G FR+DLYYRL VV Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + +PAL ER D+P+LA H + + R + + DAM L +WPGN+R+L N+I Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLI 361 Query: 361 EQCVALTSSPVISDALVEQALE-------GENTA-------LPT-------FVEAR-NQF 398 E+ + P+I+ + + + G N A +PT V + + Sbjct: 362 ERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAEL 421 Query: 399 ELNYLRKLLQITKGNVTHAARM 420 E + + K L+ T GNVT AAR+ Sbjct: 422 ERDLIVKKLEETGGNVTRAARL 443 >UniRef50_B8DRM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DRM2_DESVM Length = 525 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 176/409 (43%), Positives = 248/409 (60%), Gaps = 15/409 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYS---VVTAESGAEGLRVLNREKVDLVISDL 57 M H+P H+L+VDD+P + L RL +E + V A SGAE L L +++D++++DL Sbjct: 1 MPHRP-HVLIVDDEPDFARGLS-RLAAELFPEVVVSQAFSGAEALNCLRAQRMDVLLTDL 58 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 RM M G+QL + P + V++LTAHGSI AV A + G + F+ KPV+ D L + + Sbjct: 59 RMPGMTGLQLVTMALEQDPDLSVVVLTAHGSIETAVEALRAGAYDFVAKPVEPDQLARVL 118 Query: 118 DDALEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 LE+S + R R+ +V M L VAQSD +VL+ G+SG Sbjct: 119 GKGLERSRLLAENRRLRDVVSLGTGRDDLVGLGQAMQALRRTIATVAQSDYTVLVRGESG 178 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+ IH S R+S PF+A+NC A+PE LLESELFGH RGAFTGA +R+GLF A Sbjct: 179 TGKEMVARTIHRQSQRSSMPFLAVNCPAIPEHLLESELFGHVRGAFTGAERDRKGLFAMA 238 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGT+ LDEIGD+ +Q KLLR LQE ++RP+GS R ++VR++++T++DL MA Sbjct: 239 DGGTVHLDEIGDISQAIQTKLLRFLQEGEIRPVGSGRTEHVDVRVVASTNQDLEARMASR 298 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 EFREDL+YRLNVV++++P L ER EDIPLL LR A + + + D + L Sbjct: 299 EFREDLFYRLNVVTIRVPPLRERVEDIPLLVVTFLRNACDELGLPQKTVAPDVLDHLAGR 358 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN 396 WPGNVR+L NV+ + + V+ V Q G + ++ R Sbjct: 359 DWPGNVRELQNVVRRLTLFSGGDVLGMDTVRQVAAGGHGRTGDWLRTRQ 407 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 ++F YLR LL T GNV+ AAR++G +R K+++R +D +F+ Sbjct: 477 DRFTQGYLRDLLAQTGGNVSEAARLSGLSRVAIQKMVARLGMDVGEFR 524 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 269/459 (58%), Gaps = 24/459 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDDPG K+ LT EG+ V+ A SGAE L L ++SDL+M ++DG+ L Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + ++P +PV+++TAH ++ AV A ++G +LTKP+ D L + A+ Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 128 TDE-RWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D R R E IV +P M + VA +D +VL+ G++GTGKE+ A+AI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR +PF+A+NC A+P+ L+ESE FGH +GAFTGAV+ R G F+ A+G TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GD+ +Q KLLRVLQE+++ +G+ + ++VRI++AT+RDL + G FR+DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ L++P L ER +D+P L H LR A+R+ D + WPGNVR+L Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 358 NVIEQCVALTSSPV-----ISDALVEQALEGE----NTALPTFVEARN----QFELNYLR 404 N+ E+ V + + V + + G +T+LP +EAR +FE YL Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLP-LLEARQRLVERFEREYLT 1040 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 +LL+ +G + AR AG Y+ + + L +D++ Sbjct: 1041 RLLKERRGRIGEVARAAGIAERNLYEKMKAYGLSRDDYR 1079 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 174/452 (38%), Positives = 272/452 (60%), Gaps = 21/452 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ LL L EGY +TA SG E +++L VDLV++D++M MDGM+L Sbjct: 4 ILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGMEL 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 I+ P +PV+++TA+G++ +AA ++G +S++ KP + L + AL Sbjct: 64 MERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRVV 123 Query: 128 TDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R + I+ +SP M+ + + VA ++ +VLI G+SGTGKE+ A++I Sbjct: 124 QENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSI 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R P++A+NC AL E +LESELFGH +GAFTGA + ++G F+ A+GGTLFLDEI Sbjct: 184 HFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ + LQVKLLRVLQE+ +G + I++++R+I+AT+RDL K + FREDL+YRL Sbjct: 244 GEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRL 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAE--RHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 NV+ +++P L ER +DIPLL +H L++ A + VR D + +WPGNVR+ Sbjct: 304 NVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRE 363 Query: 356 LVNVIEQCVALTSSPVIS--DALVEQALEGENT----ALP---TFVEARNQFELNYLRKL 406 L NVIE+ + L +S IS D E NT +P T E + E +++ Sbjct: 364 LENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKRA 423 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + ++ +HAA++ G ++ + + + LD Sbjct: 424 MLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 157/358 (43%), Positives = 240/358 (67%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 +LVDD+P +L+LL + L S + A + A+ +L + + DL ++D+++ + +GM L Sbjct: 1 MLVDDEPDILRLLEITLARMNLSTLRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLI 60 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPAT 128 IQ P +PV ++TAHGS+ A+ A + G F F++KP+ + L ++ AL+ Sbjct: 61 EHIQTHYPTIPVAMITAHGSVEAAIDALKLGAFDFVSKPIALEKLRDIVNHALQVKDAGD 120 Query: 129 DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPF 188 D + +V +P M RL Q + VA+S V I+G+SG GKE+ A+ IH SPR +PF Sbjct: 121 DAASDQLLVGDTPAMERLRLQIQKVARSQAPVHIHGESGVGKEVVARLIHQLSPRAEQPF 180 Query: 189 IAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKL 248 IA+NCGA+P L+ESELFGH +G+FTGA +++ GLFQAA GGTL LDE+ D+P +QVKL Sbjct: 181 IAVNCGAIPADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPLNVQVKL 240 Query: 249 LRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALA 308 LRV+QE+ VRP+G+ +++ +VR++SATH+DL A+ G FR+DL+YR+NV+++ +P+L Sbjct: 241 LRVIQEKAVRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAIDVPSLR 300 Query: 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 +R EDIPLLA HLL++ A + T A+ +L +PGNVR+L N++ + AL Sbjct: 301 KRREDIPLLATHLLQRIAMDNGSDAINIDTAALTKLCDYDFPGNVRELENILARAHAL 358 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 262/456 (57%), Gaps = 36/456 (7%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDDD L + L EGYSV A SG GL + + DLV+ D++M M G+ Sbjct: 2 SSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--- 122 + FA I+++ +PV+++TA+G+ A+ AT+ G F ++ KP D + I ALE Sbjct: 62 EAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGH 121 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + A D AI+ SP M + + VAQ+D +VLI G+SGTGKE+ A+A Sbjct: 122 MMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 I+ S R KPF+ INC ALPE LLESELFG+ +GAFTGA S R G + A GGT+FLDE Sbjct: 182 IYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q K+LR+LQER + PLG N ID++VRI++AT+R+L KA+ FREDLYYR Sbjct: 242 IGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L VV++ +P L +R D+ LLA++ + ++ K + +A K + WPGNVR+L Sbjct: 302 LKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ------------------F 398 N +++ + + + + Q + G + A P+ + + Sbjct: 362 ANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDTA 421 Query: 399 ELNYL---------RKLLQITKGNVTHAARMAGRNR 425 +YL R+ LQ+T+GN + AA++ G R Sbjct: 422 RFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLAR 457 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 174/371 (46%), Positives = 233/371 (62%), Gaps = 7/371 (1%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD +L+++ RL+S + V+ A SG E L +L VDLVI+D+RM M GM L Sbjct: 7 ILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGGMDL 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP- 126 F EIQ G+PVI LTA+G+I DAV A + G +LTKP D L + + L + P Sbjct: 67 FHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILRKPVPH 126 Query: 127 ----ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASP 182 T E +S M L + +A SDV+VLI G+SG GKE A+ IH P Sbjct: 127 LPAQETISPKHEFWGGKSASMRELQDLVERIAPSDVNVLILGESGVGKERVARLIHQKGP 186 Query: 183 RNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA 242 R PF+ ++CG+ P LLESELFGH RGAFT A+ +++GL +AAE GTLFLDEIG++ Sbjct: 187 RRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLDEIGNISP 246 Query: 243 PLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSL 302 +QV+LLR L++RK+R +G R+I +N R+I+AT+ DLP+ + G FREDLYYRL VV+L Sbjct: 247 EMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYYRLRVVTL 306 Query: 303 KIPALAERTEDIPLLANHLLRQAAERHK-PFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 +IP L ER EDIPLLA H L+ E P VR + ++ L WPGNVR+L N +E Sbjct: 307 RIPPLRERREDIPLLAQHFLQSFCESQNLPPVR-LPQETIRWLSEYPWPGNVRELKNALE 365 Query: 362 QCVALTSSPVI 372 L V+ Sbjct: 366 AGAVLCRESVL 376 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 317 bits (811), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 177/465 (38%), Positives = 268/465 (57%), Gaps = 28/465 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL++DD+P + + + L SE + V T +G L + +E DLV++DL+M + GM++ Sbjct: 7 LLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGMEV 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 I+++QP +PVI +T + S+ AV + G ++ KP + + I ALEQ Sbjct: 67 LKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVVD 126 Query: 126 --------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D + V +S M+++ + VA +D +VLI G+SGTGKE+ A+AI Sbjct: 127 LGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAI 186 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R PF+A++C +L E LLESELFGH +G+FTGA+ + GLF+ AEGGTLFLDE+ Sbjct: 187 HKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEV 246 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ Q KLLRVLQER+V P+G + IN+R+++AT+R L + +A G FREDL++RL Sbjct: 247 SNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRL 306 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 N++ + +P L ERT DIPLL H +R AE ++ + AM+ L + S+PGNVR+L Sbjct: 307 NIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRELE 366 Query: 358 NVIEQCVALTSSPVIS--DALVEQALEG----ENTALPTFVE------------ARNQFE 399 N+IE+ V L +I+ D + A + TA+P VE A E Sbjct: 367 NIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDIE 426 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 ++ LQ +GN+T AA G R F ++ + + A D+ E Sbjct: 427 KAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGISARDYVE 471 >UniRef50_A9FLX9 Family membership n=6 Tax=Myxococcales RepID=A9FLX9_SORC5 Length = 471 Score = 317 bits (811), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 185/462 (40%), Positives = 275/462 (59%), Gaps = 23/462 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 KP +L+VDD +L LL ++ + V+TA L++L E V V+ DLRM++ D Sbjct: 2 KPT-VLVVDDKANMLALLS-KVLGKSAKVLTARGVRTALQLLETEPVTTVVCDLRMNDGD 59 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ ++ PG+P I++TA+ S+P AV A ++G + ++TKP D D L ++ A+ Q Sbjct: 60 GLEVLRAVRARWPGVPFILMTAYASVPTAVQAMREGAYDYVTKPFDPDELRALVERAMAQ 119 Query: 124 SA------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 +A A + + + RSP M L + VA +D +VLI G++GTGKE+ A+AI Sbjct: 120 AAVLKGEHDAPEAQGFAGMTGRSPAMRALYQLIERVAPTDATVLILGETGTGKELVARAI 179 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R S IA+NC A+P L+ESELFGHARG+FTGA ++R GLF+ A TLFLDEI Sbjct: 180 HEHSSRASHRPIAVNCAAIPRSLIESELFGHARGSFTGAATDRAGLFEEAHASTLFLDEI 239 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q KL RVL+ER VR +G +R+ ++VR+ISATHRDL + G FREDL++RL Sbjct: 240 GELRPTVQAKLTRVLEERAVRRIGESRERKVDVRLISATHRDLRAMVKTGAFREDLWFRL 299 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV +++P L ER EDIP LA L + A + + FS AM L WPGNVR+L Sbjct: 300 NVCVVELPPLRERAEDIPPLAQRFLAERAPQSRSSASGFSAAAMSALQMYRWPGNVRELK 359 Query: 358 NVIEQCVALTSSPVISDALVEQALEGE-----------NTALPTFVEA----RNQFELNY 402 + +E+ + + ++ I + ++G + A ++ EA R + Y Sbjct: 360 SAVERALVIETTSEIRLESLPPEVQGASPLRLTSSSDVDLAQLSYREAVDASREEMNRRY 419 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L +++ +G+V AA AG R FY+LL R L A+DF+E Sbjct: 420 LEAVMRRFRGDVLKAAAHAGVERESFYRLLRRCGLSADDFRE 461 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 316 bits (810), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 244/381 (64%), Gaps = 21/381 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L L+ G+ V AE+G L ++ ++ DLV++D+RM EMDG+++ Sbjct: 5 ILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIEM 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 +I+ P +PV+I+T + ++ AV A +QG ++ KP + + + + +Q Sbjct: 65 LQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQGE 124 Query: 124 --------------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 A A+D+R ++ R LRLLE+AR VA S +VL+ G+SGTG Sbjct: 125 AALGSEGATPAAAVPAAASDQR---TVIGRDAHFLRLLERARAVASSKATVLVLGESGTG 181 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV +++G F+ A G Sbjct: 182 KEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHG 241 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTL LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL A+ G F Sbjct: 242 GTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNF 301 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL+YRLNV+ +++PA+ ER EDI LLA+H + + R++ + S + +R + W Sbjct: 302 REDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQW 361 Query: 350 PGNVRQLVNVIEQCVALTSSP 370 PGNVR+L N++E+ V L++ P Sbjct: 362 PGNVRELENLVERAVLLSAGP 382 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 170/388 (43%), Positives = 241/388 (62%), Gaps = 9/388 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 HL ++DDDP + +L GY V E E R L+ + D +ISD+RM DG+ Sbjct: 6 HLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPGTDGLA 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL-EQSA 125 L +I++ P +P++I+TAH + AV+A + G F +L KP D + + A+ +S Sbjct: 66 LLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAMAHRSK 125 Query: 126 PATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASP 182 P ++A I+ S M + ++ S VSVLI G++GTGKE A+A+H SP Sbjct: 126 PEVRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVARALHKHSP 185 Query: 183 RNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA 242 R+ KPFIA+N A+P L+ESELFGH RGAFTGA R+G F A+GGTLFLDEIGDMP Sbjct: 186 RSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLDEIGDMPL 245 Query: 243 PLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSL 302 +Q +LLRVL E + P+G+++ + +NVR+I+ATHRDL +A+A EFREDLY+RLNV+ L Sbjct: 246 SVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYHRLNVIQL 305 Query: 303 KIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 ++PAL ER +DIPLLA + L+Q+A + + S A+ +L WPGNVRQL NV Sbjct: 306 RLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQLENVCRW 365 Query: 363 CVALTSSPVIS-----DALVEQALEGEN 385 + + +S L+EQ+ + EN Sbjct: 366 LTVMAPAQQVSPDELPHELLEQSEQLEN 393 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/457 (38%), Positives = 259/457 (56%), Gaps = 23/457 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + A +LLV+D+ +L L G+ V + + K DL + D+R+ + + Sbjct: 3 QSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGN 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G++L E + P M +II+T + + AV A + G FL KP D D + ID+ ++ Sbjct: 63 GIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKT 122 Query: 123 QSAPATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + A ++ RE ++ + P + +L E L+A SD +VLI G+SG GKE+ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H + R+ KP ++INCGA+PE+LLESELFGH +GAFTGAV R G F+ A GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLRVLQER P+GS + I ++VR+I+ATHRDL +A G FREDL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+ L +P L ER +DI LL +H + + ++ K + S + + ++ WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 354 RQLVNVIEQCVALTS----------SPVISD---ALVEQALEGENTALPTFVEARNQFEL 400 R+L N+IE+ L S +ISD L ++ EN ++FE Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFES 422 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + LQ + N AA NRT + + + L Sbjct: 423 HLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGL 459 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 179/438 (40%), Positives = 258/438 (58%), Gaps = 22/438 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + L L EGY V T+ G GL ++ +E LVI DL+M EMDG+++ Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLEV 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL------ 121 + + + P +P+I++TAHG+I A+ A + G ++TKP D D L I AL Sbjct: 67 LVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHLQ 126 Query: 122 EQSAPATDERWRE--AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 E+ E ++ IV S + + VA S+ +VL+ G+SGTGKEI A +IH Sbjct: 127 EEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQ 186 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R KPF+ INC ALPE LLESELFGH +GAFTGAV+ + G F+ A GTLFLDEI + Sbjct: 187 LSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITE 246 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MP +QVKLLRVLQE++ +G I I+VR+I+AT+RD + + +G FREDL+YRLNV Sbjct: 247 MPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNV 306 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + + +P L ERTEDIPLLA H +++ + + S +AM L++ WPGN+R+L NV Sbjct: 307 LPIHLPPLRERTEDIPLLAMHFIKKFNPSQE---QRMSPEAMGLLISYEWPGNIRELQNV 363 Query: 360 IEQCVALTSSPVIS-----------DALVEQALEGENTALPTFVEARNQFELNYLRKLLQ 408 IE+ + L I D + + G P + ++ E + K L+ Sbjct: 364 IERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKALE 423 Query: 409 ITKGNVTHAARMAGRNRT 426 + GN T AA++ G R+ Sbjct: 424 KSNGNQTRAAQLLGITRS 441 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 173/448 (38%), Positives = 259/448 (57%), Gaps = 21/448 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L++DDDP ++ ++ G+ V SG + L L LVI+DLRMD++ G+ Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + E ++V P PVI++TA+ ++ A+ A + G + ++TKP D L I AL+ + Sbjct: 62 DILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQS 121 Query: 126 PATD---------ERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + E++R E I+ S M + VA +D ++LI G+SGTGKE+ A+ Sbjct: 122 LVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVAR 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R +PF+AINC ALPE LLESELFGH +G+FTGAV ++ GLF+ AEGGT+FLD Sbjct: 182 ALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+ M PLQ KLLRVLQER++R +G + + INVR+++AT+ L + G FREDLYY Sbjct: 242 EVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V+ +++PAL ER +DIPLL +H L++ A + + A++ L WPGNVR+ Sbjct: 302 RLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRE 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEARNQFELNYLR 404 L N +E+ AL +I + + TA P T E + E Y+ Sbjct: 362 LENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYIE 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLL 432 + ++ + AA+M G + Y+ L Sbjct: 422 ETIKFNGNSREKAAKMLGISMATLYRKL 449 >UniRef50_B5ELA2 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ELA2_ACIF5 Length = 451 Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 169/368 (45%), Positives = 246/368 (66%), Gaps = 3/368 (0%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L+VDD+PG+++LLG+ L G +V A S AE L L +SDLR+ + G+ L Sbjct: 11 LIVDDEPGIVELLGITLQGMGIAVTGAYSLAEARARLAEGAPSLCLSDLRLPDGSGLDLV 70 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS--AP 126 ++++ P +PV ++TA+ S AV A Q G F ++ KP++ L + I A++ S +P Sbjct: 71 RRLRELYPQVPVAVITAYSSADGAVEAMQAGAFDYMAKPIELARLRRLISQAVDLSRLSP 130 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 A + +V +P+M RL + R VA+S+ V I G+SGTGKE+ A+AIH + PR+ K Sbjct: 131 AG-LGGTQRLVGDAPVMQRLRDDIRRVARSNAPVHITGESGTGKELAARAIHASGPRHDK 189 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 PF+A+NCGA+PE L+ESELFG +GA++GAV REGLF AA GGT+FLDEIGD+P +QV Sbjct: 190 PFVAVNCGAIPEGLVESELFGAEKGAYSGAVQRREGLFAAANGGTIFLDEIGDLPMMMQV 249 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLR +QER +RPLG+ R+I +++R ISATHRDL + +A G+FR+DL YRL+VV L +PA Sbjct: 250 KLLRAIQERAIRPLGAAREISLDLRFISATHRDLQEMVAAGKFRQDLRYRLDVVRLHMPA 309 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L E EDIP LA +L++ + S ++RL + ++PGNVR+L N +E+ +AL Sbjct: 310 LREHPEDIPQLAEVILQRIGVAPQDIPALLSPGTLERLGSYAFPGNVRELENFLERSLAL 369 Query: 367 TSSPVISD 374 ++ D Sbjct: 370 KQEGMLLD 377 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 186/462 (40%), Positives = 262/462 (56%), Gaps = 37/462 (8%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLVDDDP + K+LG LT G + A G E L +L + VD+V+SD+RM MDG+Q+ Sbjct: 9 VLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDGLQV 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 AE+ + P +PVI+LTAHG++P AV A + G F+ KP D++ + + AL + A Sbjct: 69 LAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLR---A 125 Query: 128 TDERWREAI------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 E R+ + + RS M + A +VL+ G+SGTGKE+ A+A+H+AS Sbjct: 126 QGEEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHDAS 185 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR PF+ ++C ALP+ LLESELFG+ +GAFTGA + + G + A GGTLFLDE+GD+ Sbjct: 186 PRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVGDIS 245 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 +QVKLLRV+QER++ LG + + ++VR ++ATH+ L + + G FREDL+YRLNVV Sbjct: 246 PAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLNVVP 305 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERH--KPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + IPAL ER +DI LA H L A+ + PF TD + L WPGNVRQL N Sbjct: 306 VWIPALRERPDDIEPLALHFLEVHAKTNGRPPFT--LMTDGLAALRAQPWPGNVRQLQNF 363 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALP------------------------TFVEAR 395 +E+ V L+ + VI V Q L + P T R Sbjct: 364 LERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLESQR 423 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + E + L+ N T AAR+ G +R Y L + L Sbjct: 424 KEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 314 bits (805), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 265/456 (58%), Gaps = 25/456 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS+K +L+VDD+ + L +L EGY V + ++ EG+ ++ E+ D+V++DLR+ Sbjct: 1 MSNK---ILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+GM+L EI+ P + V+I+TA+G++ AVAAT++G + ++ KP D L + A Sbjct: 58 NMNGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRA 117 Query: 121 LE-QSAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ ++ A R R IV S M +L+E + ++ D ++LI G+SGTGK Sbjct: 118 LQHKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E A A+H S R PFI ++C AL ++LESELFGH +G+FTGA+ R G F+ A GG Sbjct: 178 EKIAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 ++FLD++ D+P +QVKLLRV+QER +G + + INVRII AT +DL +GEFR Sbjct: 238 SIFLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNVV + IP L ER +DIP L N+ L++ RH+ + S + + LM +WP Sbjct: 298 EDLFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVIS-DALVEQ-----------ALEGENTALPTFVEARNQF 398 GNVR+L NVIE VA + S I+ D L + +++ NT + + Sbjct: 358 GNVRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEV 417 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E + Q T GN A + G RT L R Sbjct: 418 EKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVR 453 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 314 bits (804), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 173/445 (38%), Positives = 267/445 (60%), Gaps = 19/445 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LL++D+ L L+ + LTSE TA +G EGL++L+ ++ D++I+D+RM M G ++ Sbjct: 3 ILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNEV 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS--- 124 + K+ P MPVII+TAHG+IPDAVAA ++G + +LTKP + + L +I A+E S Sbjct: 63 MEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISRMR 122 Query: 125 --APATDERWREAI----VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + +++I V +S +++L A VA +D VL+ G+SGTGKE+ A+ +H Sbjct: 123 RENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQVH 182 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 + S R KPFI +NC A+PE L ESELFGH +G+FT A + +G AEGGTLFLDEIG Sbjct: 183 SKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEIG 242 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++P +QVKLLR LQE +++P+GS + ++VR+++AT+R L + +GEFR+DL+YRLN Sbjct: 243 ELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRLN 302 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V +++P L++R EDI L + R FS AM++L+ SW GN+R+L N Sbjct: 303 VFPVEVPPLSKRREDIKDLVELFSAKYGARI-----TFSEKAMEKLINYSWTGNIRELEN 357 Query: 359 VIEQ-CVALTSSPVISDALVEQALEGENTALPTFVEAR----NQFELNYLRKLLQITKGN 413 I + C+ + D L + T L + + + E N + K L GN Sbjct: 358 TIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALHKFDGN 417 Query: 414 VTHAARMAGRNRTEFYKLLSRHELD 438 + AA+ R L ++E++ Sbjct: 418 KSRAAKYLCIPRHVLLYRLEKYEIN 442 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 274/467 (58%), Gaps = 28/467 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +L+VDD+ +L LL L+ + + + + + +L + DLVI+DLRM D Sbjct: 2 PGKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G+ + +++ P VII+TA+G+I A+ AT++G F ++TKP K+ + +D AL+ Sbjct: 62 GLGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKW 121 Query: 123 QSAPATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 Q + RE +++ S M L Q VA++ +VLI G+SGTGKE+ Sbjct: 122 QQLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ +H S R + FI +NC LPE ++ESELFGH RG+FTGA+ +++GL + A GTLF Sbjct: 182 ARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGD+ +QVKLLR+LQE + + +GSN +++R I+AT+++L + + RGEFREDL Sbjct: 242 LDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+++ +P L ER +DIPLL + L + H ++ S + LM WPGNV Sbjct: 302 FYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALV----------EQAL--EGENTALPTFVEARN----Q 397 R+L N IE+ V + S + V E L EG+ ++P F EA++ + Sbjct: 362 RELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMP-FKEAKDKLIEE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 F+ Y+ K L GNV+ AAR +G R ++L+ +D+ FK+ Sbjct: 421 FQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVDSKTFKK 467 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/413 (39%), Positives = 251/413 (60%), Gaps = 9/413 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + +L L +GY V A G E L L +E++D+V++DL+M ++ G+ L Sbjct: 4 VLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLGL 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP- 126 + P PVII+TAHG+I AV A ++G F ++TKP D+D L I+ A+ Sbjct: 64 LEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIKN 123 Query: 127 ------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 A +E + IV S + + + VA + ++LI G++GTGKE+ A AIH Sbjct: 124 HGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHRG 183 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPR +I INCGA+ + L+E+ELFG+ +GAFTGA S + G F+ A+ GT+FLDEIG++ Sbjct: 184 SPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGEI 243 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLL+VLQ++ +G + I ++VRII+AT+RDL K + G FREDLYYRLNVV Sbjct: 244 PRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNVV 303 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +K+P L ER EDI L ++ L + ++ ++ ++ +WPGN+R+L N+I Sbjct: 304 PIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENLI 363 Query: 361 EQCVALTSSPVISDALVEQALEG-ENTALP-TFVEARNQFELNYLRKLLQITK 411 E+ + LT IS V + ++ E+ LP V +N FE LR++ T+ Sbjct: 364 ERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTE 416 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 264/447 (59%), Gaps = 24/447 (5%) Query: 10 LVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFA 69 +VDD+P + K L L EGY V S L + D+V SD+R+ +MDG++L Sbjct: 8 IVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLELLP 67 Query: 70 EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-SAPAT 128 +I+ ++P V+I+T +GSI A+ A ++G F ++TKPV+ + A E+ Sbjct: 68 KIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGMRME 127 Query: 129 DERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + R REA IV SP + L R VA D +VLI G+SGTGK + A A+H+ Sbjct: 128 NARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALALHH 187 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR ++PF+ NCG E+L+ SELFG+ +GAFTGA +++ GL +AA GGT+FLDE+G+ Sbjct: 188 LSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDEVGE 247 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MP +QV+LL VLQER++ +G + +D+++R+I+AT+RDL + +G FREDL++RLNV Sbjct: 248 MPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFRLNV 307 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 VS +P LA+R EDIPLL H + + + V+ A+ L S+PGNVR+L N+ Sbjct: 308 VSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRELENI 367 Query: 360 IEQCVALTSSPVIS--------DALVEQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 IE+ VALT I L LEG+ LPT E E Y+ ++L+ T Sbjct: 368 IERAVALTDGQTIGLLDLPEDIRNLEFATLEGD--GLPTLAEV----ERRYVIRILEKTG 421 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 N AA++ G RT ++ L + ++ Sbjct: 422 YNKRLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 182/458 (39%), Positives = 272/458 (59%), Gaps = 25/458 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 P +L+V+DD +L L +G+SV TA S A + L+ + DLV+SDLR+ + DG Sbjct: 2 PHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQDG 61 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L + +++ + +P+II+T + I AV A + G +++KP+ D L + I++AL+ Sbjct: 62 IFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQNK 121 Query: 125 A---PATDERW-------------REAIVTRSPLMLRLLEQAR-------LVAQSDVSVL 161 A P E+ A V S + E AR LVA + +SVL Sbjct: 122 ALPTPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTPMSVL 181 Query: 162 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNRE 221 ING SGTGKE A IH S R KPFIAI+CG++P++L SE FGH +G+FTGA++++ Sbjct: 182 INGASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGALNDKT 241 Query: 222 GLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLP 281 G F A GGTLFLDEIG++ +Q++LLR LQER++RP+GSN++I+++VR++SAT+ +L Sbjct: 242 GAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATNENLQ 301 Query: 282 KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAM 341 +A+ +G FREDLY+R+N +L++PAL ER EDI L AN L QA + F T A Sbjct: 302 QAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFDTAAS 361 Query: 342 KRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQAL-EGENTALP-TFVEARNQFE 399 + L T SWPGN+RQL N++++ L S I+ A + L E +A P TF E Sbjct: 362 QALQTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYELQEPIRSAGPQTFSLHDEAAE 421 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + L+ T N + AA + G +R Y L +++ Sbjct: 422 KKRILEALKQTGNNKSKAAILLGIDRKTLYNKLKLYDI 459 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/461 (39%), Positives = 270/461 (58%), Gaps = 26/461 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L + S+ A +G + L+ ++ + L+ D+ M ++DG++ Sbjct: 12 ILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQLDGLKT 71 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-P 126 +I++++ V+I+TAHGS AV A ++G + ++ KP + + L +ALE+ A Sbjct: 72 LEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNALEKIALQ 131 Query: 127 ATDERWREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R R I + +S +M + ++ V +DV+VL+ G+SG+GKE+ A I Sbjct: 132 EENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKELAAHEI 191 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + PFI +NC A+PE L+ESELFGH RG+FTGA R G F+ A GT+ LDEI Sbjct: 192 HRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGTILLDEI 251 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM Q KLLRVLQE+K LG + ++VRIISATHRDL + + G FREDLYYR+ Sbjct: 252 GDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFREDLYYRI 311 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV++KIP L +R EDIPLL N ++ +++H V + S DAMK+L +WPGN+RQL Sbjct: 312 NVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPGNIRQLK 371 Query: 358 NVIEQCVALTSSPV--ISDALVEQALEGENTALPT--------FVEARN----QFELNYL 403 N IE + LT++ V ISD L E + E T T F EA+ FE +++ Sbjct: 372 NTIESAIVLTNNDVLDISD-LSEDIIREEKTPDSTKNVHYHLSFREAKKILIENFEKDFI 430 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 K L+ GN++H A +R + + +L+ D KE Sbjct: 431 SKKLEECGGNISHTAEALDMHRQNLQQKIKDLQLN-KDIKE 470 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 186/450 (41%), Positives = 254/450 (56%), Gaps = 25/450 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+ L +L L G+ + A +G E L +L ++ VDLVISDL M M G+ Sbjct: 12 SRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGMGGI 71 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + ++ PG+P I TA GSI AV+A +QG F +L KP+D I ALE + Sbjct: 72 EFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALEFAR 131 Query: 126 PATD-----ERWREA-----IVTRSPLMLRLLEQA-RLVAQSDVSVLINGQSGTGKEIFA 174 + + E + E IVT+SP M +LE A R+ A +V + G+SGTGKE+ A Sbjct: 132 LSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLA 191 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH AS F+A+NC A+PE LLESELFGH RGAFTGA +REG F A GGT+ L Sbjct: 192 RAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGTVLL 251 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP PLQ KLLRVL+ER +G NR ++ R+I AT+RDL + + +G FREDLY Sbjct: 252 DEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLY 311 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+NVV + IP L ER EDIPLL + L+ + + S AM L+ SWPGNVR Sbjct: 312 HRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPGNVR 371 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELN------------- 401 +L NV+E + S +I + + + + +F ++ Sbjct: 372 ELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLDAVVS 431 Query: 402 -YLRKLLQITKGNVTHAARMAGRNRTEFYK 430 L LQ GN + AA + NR FY+ Sbjct: 432 RVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/453 (39%), Positives = 255/453 (56%), Gaps = 24/453 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 AH+L+VDD+ +LG L S G+ V A++ L +L+ E++DL+ISDL+M M G+ Sbjct: 2 AHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +P I+LTA+ ++ A+ A + G F +L KP D + + +D AL+ S Sbjct: 62 DFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSK 121 Query: 126 PATDERW---RE-------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 +E W RE +V SP M L Q VA + S+LI G+SGTGKE+ AQ Sbjct: 122 -LQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQ 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR++K ++INC A E LLESELFGH RGAFTGA+ ++GL + ++GGTLFLD Sbjct: 181 ALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+ P LQ KLLRVLQE+ R +G +I ++RII+ATHR+L + + G FREDLYY Sbjct: 241 EIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVVSL +P L R EDIPLL+ L + + + S+ A L WPGNVR+ Sbjct: 301 RLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALE---------GENTALP---TFVEARNQFELNYL 403 L N++E+ + P + + Q E A+P E E + Sbjct: 361 LQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLI 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEF-YKLLSRH 435 + L +G AA + G +R+ YKL H Sbjct: 421 QAALIDARGVQAKAAELLGISRSNLQYKLKKYH 453 >UniRef50_B9JNH6 Two-component response regulator protein regulating C4-dicarboxylate transport system n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNH6_AGRRK Length = 450 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/423 (42%), Positives = 248/423 (58%), Gaps = 18/423 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LL++DD L + L L+ SV A G E L+VL + +D+VISD+RM + G++L Sbjct: 8 VLLIEDDAALRRSLAQWLSLNELSVTEAADGNEALKVLRSDTIDVVISDVRMPGISGLEL 67 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS--- 124 A I+K P +PVIIL+ HG +P AVAA Q G F+FLTKP + L + +ALEQ+ Sbjct: 68 LAVIRKTWPELPVIILSGHGDVPMAVAAIQAGAFNFLTKPYVPEQLIGTLQNALEQTRLR 127 Query: 125 --------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + A R ++ RL +A V VLI G++G+GKE+ A+ Sbjct: 128 RRVVSLEQSNAIQARLERQLLGADQATTRLKSTIEQLAPYHVDVLIKGETGSGKEVVARL 187 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR + PF+AINC ALP ++ESELFGH GAFTGA R G F+ A+GGT+FLDE Sbjct: 188 LHECSPRQAGPFVAINCAALPLDIVESELFGHETGAFTGASGIRIGKFEFAKGGTIFLDE 247 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I MP +Q KLLR LQER V LGSNRDI I++RI+SAT DL +RG FREDLYYR Sbjct: 248 IESMPLSIQAKLLRALQERTVTRLGSNRDIPIDIRILSATKEDLRDLASRGLFREDLYYR 307 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L + IP L +R D LL H + AER + + + + + L+ +WPGNVR+L Sbjct: 308 LAAADIAIPPLRDRGHDALLLFEHFMLSMAERLERKALSLTDEETRFLLAYAWPGNVREL 367 Query: 357 VNVIE-QCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 ++ E + + L P D + L EN++L V +QFELN + + L+ G + Sbjct: 368 KHLAERRALGLDWRP---DTDQQDDLTVENSSLADLV---DQFELNLIEQALRNADGRTS 421 Query: 416 HAA 418 AA Sbjct: 422 LAA 424 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 178/459 (38%), Positives = 267/459 (58%), Gaps = 20/459 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+V+D+P L + L EG++V A+ G +G + + D+++SDL M Sbjct: 1 MSVCGRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M GM L ++ +QP V+I+TAHG++ AV A ++G F+ KP L + + Sbjct: 61 QMGGMDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNV 120 Query: 121 L------EQSAPATDERWRE----AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 EQ+ ++ + ++ +S M + + RLVA SD SVL+ G+SGTGK Sbjct: 121 CSTRLLREQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A A+H S R +K ++ ++C +LPE L+ESELFG+ RGAFTGA R G F+AA GG Sbjct: 181 EMVAAAVHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P QVKLLR LQER++ LGSNR +D+NVRI+SA+ R L + G FR Sbjct: 241 TLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL++R+N V++ +P L +R ED+P+LA L++ AE K + FS + ++ W Sbjct: 301 EDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWT 360 Query: 351 GNVRQLVNVIEQCVALT--SSPVISDALV-------EQALEGENTALPTFVEARNQFELN 401 GNVR+L NV+E+ V S + D V E ALEG + + T EA + E+ Sbjct: 361 GNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVM-TMHEAVEKAEVR 419 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +R L T G AA + G +R ++ + H++ + Sbjct: 420 AIRAALASTGGRRADAADLLGVSRKTLWEKIKHHDVTVD 458 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 272/448 (60%), Gaps = 16/448 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +H+++VDD+P LK L L EG+ V + L + D++ISD+RM MDGM Sbjct: 3 SHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGM 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L ++ P + VI++T + S+ AV A ++G F +L KP D + + + AL + Sbjct: 63 ELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLS 122 Query: 126 PATDERWREAIVTRS---PLML----RLLEQARLVAQ---SDVSVLINGQSGTGKEIFAQ 175 R R+ P+++ R+ E ++ Q ++ +VLI G SG+GKE+ A+ Sbjct: 123 ARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVAR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH AS R++ PF+A NCGAL E L+++ELFGH +GAFTGA S GL +AA GGTLFLD Sbjct: 183 AIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+MP +QVKLLRVLQE ++ +G +R + ++VRI+SAT D+ A+ G FR+DLY+ Sbjct: 243 EIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYF 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NVV++K+P LAER EDIPLLA H+L + + ++A S AM L ++PGNVR+ Sbjct: 303 RINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRE 362 Query: 356 LVNVIEQCVALTSSPVISDA-----LVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 L N++E+ VA+ +I + LV L+ TF+ + E +Y+ LL+IT Sbjct: 363 LENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTL-AELERDYMAHLLKIT 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELD 438 G + A + G +R ++ + +++L+ Sbjct: 422 GGARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 170/378 (44%), Positives = 235/378 (62%), Gaps = 10/378 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +LLVDDD L LG L EG+ A + + + L + +LVI+DLR+ DGM Sbjct: 5 ASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGEDGM 64 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-S 124 L ++++K PV+++T + + AV A + G LTKPV D L AID A+ Q Sbjct: 65 TLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMNQRK 124 Query: 125 APATDERWREAIVTRSPL---------MLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 A +E R + RS L M+++ + VA + S+LI G++GTGK + A+ Sbjct: 125 IEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSMIAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIHN R S PFI + CGALP+ LLESELFGH GA+TGA ++R G F+ A+GGTLFLD Sbjct: 185 AIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI +QVKLLRVLQE + PLG ++ R+I AT+ +L +A+A G FR+DLYY Sbjct: 245 EIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NVV++ +P+L ERT DIPLL +H LR+AAE + F +AMK L + +WPGNVRQ Sbjct: 305 RINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGNVRQ 364 Query: 356 LVNVIEQCVALTSSPVIS 373 L NV+E+ V L + V++ Sbjct: 365 LENVVERAVLLATDRVLT 382 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 159/376 (42%), Positives = 236/376 (62%), Gaps = 10/376 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+DD L K++ ++L EGY +A + E +L++ LV++DL + M G++L Sbjct: 6 ILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGMSGLEL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 +++ P VI++TA G+I AV A + G + FLTKP+ L + LE Sbjct: 66 LKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLEHHRLI 125 Query: 126 -------PATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A DE++ EAIV S ++R L+ A VA +D ++LI G++GTGKE+ A+AI Sbjct: 126 EEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKELVAKAI 185 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R +PFI INCGA+P++LLESELFGH +G+FTGA+++++G + A+GGT+ LDEI Sbjct: 186 HLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTVLLDEI 245 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP LQV++LR++QER++ +G+ ++VRI++ATHR+L + G FREDLYYRL Sbjct: 246 GEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFREDLYYRL 305 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV + +P L ERT DI +L H L + +H STD + SWPGNVRQL Sbjct: 306 LVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGNVRQLE 365 Query: 358 NVIEQCVALTSSPVIS 373 N +E+ V L I+ Sbjct: 366 NAVERLVLLARDSTIN 381 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 175/440 (39%), Positives = 256/440 (58%), Gaps = 18/440 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + + L L GYSVVTA SG E L +N + V+ D+RM EMDG+++ Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++ PG+PVI++TA+ + A + G F ++ KP++ D L ++ A + P Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 128 TDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 E ++ SP M + + +A SDV+VLI G+SGTGKE+ A+AIH S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR KPF+ I+C A+PE LLESELFGH +GAFTGA + + G F+ A+GGT+FLDEIGD+ Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR LQE+ +G ++VRII+AT++DL + + G FREDLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 +K+P L ER EDI LL ++ + + + V + L+ +WPGNVR+L NV E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 362 QCVALTSSPVIS-DALVEQALE-----------GENTALPTFVEARNQFELNYLRKLLQI 409 + V + VI+ ++L E L E+ + E + E + + + L+ Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 410 TKGNVTHAARMAGRNRTEFY 429 +GN T AR G +RT Y Sbjct: 425 YRGNKTAVARALGMSRTTLY 444 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 170/382 (44%), Positives = 238/382 (62%), Gaps = 9/382 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ L + L EG+ V A GA LR+L ++ +LV++D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DGMQL + I++TA G + AV A + G + +LTKPVD L + A Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LE-QSAPATDERWREAIVTRSPLML--------RLLEQARLVAQSDVSVLINGQSGTGKE 171 LE Q+ A + R+ + P +L +++ A VAQSDV+VLI G+SGTGKE Sbjct: 121 LELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ IH S R KPFI +NC AL E L+E+ELFGHA+G+FTGAV+++ G F A+GGT Sbjct: 181 LVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGD+ A Q LLRVL++ R +G +NVR+I+AT++ L +A+A G+FRE Sbjct: 241 LFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRL +V + +P L ER EDIPLL + L ++HK R ST+A++ WPG Sbjct: 301 DLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVIS 373 NVRQL NVIE+ V + + V+ Sbjct: 361 NVRQLRNVIERLVVTSPNAVVG 382 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 179/457 (39%), Positives = 266/457 (58%), Gaps = 26/457 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ A++L+VDD+ + +LL + L+ EGY V AE G + L +L K DLV+ D+R+ Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M G+ + +K VI+++A+ + AVAA +G + F+ KP+D L Q I + Sbjct: 61 DMSGIDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRS 120 Query: 121 L-----EQSAPATDER-----WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L EQ A D + E IV P M + R VAQ+ +LI G+SGTGK Sbjct: 121 LSLRTVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + PF+ +NCG +PE L+ESELFGH +G+FTGAV +++GLF A G Sbjct: 181 ELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG++ PLQVKLLRV+Q+ + +G +I ++ RI+SAT+++L + + G FR Sbjct: 241 TIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ L +P L ER DI +LA + + ++ V S+ A+ L S+P Sbjct: 301 EDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQA------LEG---------ENTALPTFVEAR 395 GNVR+L N+IE+ VAL+++ +I + A +EG E T E Sbjct: 361 GNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEIL 420 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEF-YKL 431 E YL+K L+ + GN AA + G + F Y+L Sbjct: 421 ADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRL 457 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 161/377 (42%), Positives = 241/377 (63%), Gaps = 11/377 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGL-RVLNREKVDLVISDLRMDEMDGMQ 66 + + DD+ G+LK + L S+G V T SG L R+ DL++ D++M +MDG+Q Sbjct: 11 IFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPDMDGLQ 70 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + E++K++PG+PV+I+TA G+I AV A + G + ++TKP K+ + +++ LE+ Sbjct: 71 ILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVLERELL 130 Query: 127 ATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + +AIV S + E VA S+ ++LI G+SGTGKE+ A A Sbjct: 131 RKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKELIAGA 190 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R + ++INC AL + LLES+LFGH RGAFTGA +N++GL + A+ GTLF+DE Sbjct: 191 IHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGTLFMDE 250 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM LQ KLLRV+QE P+G+ R +++R ++AT+++L K +A G FREDLYYR Sbjct: 251 IGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFREDLYYR 310 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+S+ +P L ER EDI LA H LR+ +R V F+ +A+ ++ SWPGN+R+L Sbjct: 311 LNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPGNIREL 370 Query: 357 VNVIEQCVALTSSPVIS 373 NV+E+ V L S V++ Sbjct: 371 ENVVERAVILARSGVVT 387 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 176/460 (38%), Positives = 263/460 (57%), Gaps = 21/460 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + L + L+ EGY V TA +G + +L + D+VI+DL+M+ DG Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGY 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + ++++ PVII+TA GSI AV A + G ++ KP + + + + LE + Sbjct: 62 DVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHGS 121 Query: 126 ----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + + IV S M ++ + A + +++I G+SGTGK + A+ Sbjct: 122 LRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAE 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR KPF+AINC A+PE LLESELFG+ +GAFTGA SN+ GL A+GGTLFLD Sbjct: 182 AVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q K+L+VL+ +V PLG + ++++RIISAT++DL + FREDLYY Sbjct: 242 EIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ +++PAL ER EDIPLLA +++ V+ F AMK +M WPGNVR+ Sbjct: 302 RLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVRE 361 Query: 356 LVNVIEQCVALTSSPVISDA-LVEQALEGENTALP---TFVEARN-------QFELNYLR 404 L NV+E+ V I+ A L + G+ TA P T V +E + + Sbjct: 362 LKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDIII 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L G+ A+ G + T Y+ +S+ +D K+ Sbjct: 422 NALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGIDEEALKK 461 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 172/370 (46%), Positives = 232/370 (62%), Gaps = 6/370 (1%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+D+ L +L L +EG+S ES + L ++ RE LV++D R+ M G +L Sbjct: 6 ILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMSGTEL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL----EQ 123 A I++ P PV+I TA+G I AV A + G +LTKPVD+ L I AL Sbjct: 66 LARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSCRGHT 125 Query: 124 SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 + P + + R I+ SP L +LE LVA + +VLI G+SGTGKE+ A+ +H ASPR Sbjct: 126 NPPRSQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLHVASPR 185 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 PF+A NCGA+P L+ESE+FGH +GAFTGAV ++ G + A GTLFLDE+GDMP Sbjct: 186 AHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEVGDMPLA 245 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 +QVKLLR LQER+ LG N+ + + RII+ATH DL KA+ G FREDLYYRLNV+ L Sbjct: 246 MQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRLNVIPLH 305 Query: 304 IPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 IP L ER ED+ L +H LR+ E +P V +T A+ + SWPGN+RQL N++E+ Sbjct: 306 IPPLRERREDVAPLVHHFLRRVCTELGRPEVD-IATAALAAMEAYSWPGNIRQLENIVER 364 Query: 363 CVALTSSPVI 372 V L I Sbjct: 365 LVVLNRGGTI 374 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 169/380 (44%), Positives = 236/380 (62%), Gaps = 10/380 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDD+ G +L L L EGY +V E L L+R + DL+++DL+M Sbjct: 5 RKSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQ 64 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G+ L + P VI++TAHGS+ AV A + G F +L KP+++D L + A E Sbjct: 65 SGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFE 124 Query: 123 QSAPATDERW---REAIVTRSPLML----RLLEQARLVAQ---SDVSVLINGQSGTGKEI 172 + + R R A T P ML R+ E R+VA+ + +VLI G+SGTGKE+ Sbjct: 125 RIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKEL 184 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH S R PF+AINC A+PE L+ESELFGH +G+FTGA + G+F+AA GGT+ Sbjct: 185 VARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTV 244 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+M +Q KLLR +QE++VR +G +I ++VRIISAT+++L + + RG FRED Sbjct: 245 FLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFRED 304 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV+ + +P L ER D+ LA +++ + V S A+K LM SWPGN Sbjct: 305 LYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVI 372 VRQL +VIE+ V + S VI Sbjct: 365 VRQLESVIERAVLMAESSVI 384 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 165/378 (43%), Positives = 235/378 (62%), Gaps = 11/378 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+ + + L + L EG+ V A G L L +E DL+ISD+RM +G+ Sbjct: 2 GRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + +++QP +PV+++TA S DAV A + G F +LTKP D + + AL Sbjct: 62 ELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSRR 121 Query: 126 PATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + I+ SP ML++ E R VA + +VLI+G+SGTGKE+ A Sbjct: 122 QLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH SP F+ I C A+PE L ESELFGHA+GAFTGA +NR GLF+ A GT FL Sbjct: 182 RAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFL 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++ Q KLLRVLQER+++ +G + I IN R+ISAT+RDL + +A G FREDL+ Sbjct: 242 DEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLF 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL VV +++P L ER D+PLL H L + + +R S+ A++ LM +PGNVR Sbjct: 302 YRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVI 372 +L N+IE+ VA+ +S +I Sbjct: 362 ELENIIERGVAMENSQII 379 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 310 bits (794), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 267/455 (58%), Gaps = 24/455 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDDDP ++L +RL + V A LR L D++++DLRM +DG+ Sbjct: 2 ARILVVDDDPLAQRVL-VRLLCPAHDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGI 60 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--- 122 +L + +++ P + V ++T H SI AV AT++G +L+KP + D + ++ A+E Sbjct: 61 ELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRR 120 Query: 123 -------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 Q A ++ P M L E AR A++D +VL+ G++G GKEI A+ Sbjct: 121 LLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H SPR + F++INCGALPE LLESELFGH RGAFTGA++ R G F+AA+GGT+ LD Sbjct: 181 LVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG QV+LLRVLQER V+ +G I ++VR+I+AT+ DL +A G FR+DLYY Sbjct: 241 EIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERH-KPFVRAFSTDAMKRLMTASWPGNVR 354 RL VV+L +P L ER ED+ LA H LR+ RH P VR S + + +L+ +PGNVR Sbjct: 301 RLGVVTLVVPPLRERREDVGPLAEHFLRKY--RHVNPAVRGVSPEGLAKLVAYDYPGNVR 358 Query: 355 QLVNVIEQCVALTSSPVISD---------ALVEQALEGENTALPTFVEARNQFELNYLRK 405 +L NV+E+ + L + +S AL E + P V A + E ++R+ Sbjct: 359 ELENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPV-AIDDAEREHIRR 417 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +L+ G AAR+ G +++ ++ L R+ L + Sbjct: 418 VLERCGGRRGEAARLLGIDKSTLWRKLKRYGLGGD 452 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 310 bits (793), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 177/454 (38%), Positives = 262/454 (57%), Gaps = 30/454 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+ DD+P + +L L LT GY V G + L+ L D+++ D+RM + DG+ + Sbjct: 7 ILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLVV 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 E P + ++++A+GS A+ A G F ++ KP D + + A E+ Sbjct: 67 LREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERLV 126 Query: 128 -TDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R ++A I+ SP + LL Q +A D +VLI+G+SGTGKE+ A+ + Sbjct: 127 RENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIAREL 186 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR F+A+NCGA+P L+ESELFGHA+GAFT A + + GLF A+GGTLFLDE+ Sbjct: 187 HVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDEV 246 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P QVKLLRVLQE ++RP+G NR +NVR+++AT RDL + +A+G+FREDLYYRL Sbjct: 247 GELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYRL 306 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAER--HKPFVRAFSTDAMKRLMTASWPGNVRQ 355 NVV+L++P L ER ED+PLLA + + +P V + +A L + +WPGNVR+ Sbjct: 307 NVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVRE 366 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------------TFVEARNQF 398 L N +E+ V L P I A + + L + P + A + Sbjct: 367 LENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIREL 426 Query: 399 ELNYLRKLLQITKGNVTHAARMAG-RNRTEFYKL 431 E +Y+R L+ TKGN T AA + +R YK+ Sbjct: 427 EESYIRAALRKTKGNRTRAAELLDISHRALLYKI 460 >UniRef50_C5V657 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V657_9PROT Length = 464 Score = 310 bits (793), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 179/440 (40%), Positives = 273/440 (62%), Gaps = 31/440 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLVDD+P +L+LL + L G V A E L L + DL ++D+RM + DG+++ Sbjct: 25 VLLVDDEPDILELLEMTLLKMGLVVDKAACVQEALAKLAANRYDLCLTDMRMPDGDGLEV 84 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--QSA 125 I +PV ++TAHG++ +A+ + G F +L KP+ + L + AL Q + Sbjct: 85 VKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQPS 144 Query: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 P+ D+ ++ +P M ++ + VA+S V I+G+SG+GKE+ A+ I + PR+ Sbjct: 145 PSADK----LLLGNAPAMQKVRDLIERVARSQAPVYISGESGSGKELAARLIVQSGPRSD 200 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 +P IA+NCGA+PE L+ESE FG+ +GAFTGA +R+G FQAA GGTLFLDE+ D+P +Q Sbjct: 201 QPVIAVNCGAIPENLMESEFFGYKKGAFTGADKDRDGFFQAANGGTLFLDEVADLPLTMQ 260 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 VKLLRV+QE++VR +GS + ++VR+ISATH+DL + + G+FR+DLYYRLNV+ +++P Sbjct: 261 VKLLRVIQEKRVRKVGSTTEEPVDVRLISATHKDLAERVKSGQFRQDLYYRLNVIPIQMP 320 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRA-----FSTDAMKRLMTASWPGNVRQLVNVI 360 +L E EDI +A +L + +RA FS +A++ L +PGNVR+L N+I Sbjct: 321 SLRELREDIAQIAQQVLNR--------LRAGVPTRFSDEALRVLQQYDFPGNVRELENII 372 Query: 361 EQCVALTSSPVISD-----ALVEQALEGENT---ALPTFVEARNQFELNYLRKLLQITKG 412 E+ +AL S VI+ + VEQA GE T LP ++ ++ E L + LQ T Sbjct: 373 ERALALCSEGVIAAEDLCLSPVEQAEVGERTDKYPLPAYL---DRVEKEALMEALQQTNF 429 Query: 413 NVTHAARMAGRN-RTEFYKL 431 N T AA++ G RT Y++ Sbjct: 430 NRTAAAKLIGLTFRTMRYRM 449 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 173/456 (37%), Positives = 266/456 (58%), Gaps = 22/456 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 ++ K +L+ +DD L L +EGY + ++G + + +K +LVI+DL+M Sbjct: 10 VTMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMP 69 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG++L ++ + P VI++T +G++ AV A + G F +++KP+ D + ++ A Sbjct: 70 NGDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRA 129 Query: 121 LEQSAPATD-----ERWRE-----AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L ++ + + RE ++ S M + + VA+SD +V+I G+SGTGK Sbjct: 130 LSYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGK 189 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S RN+ P I +NCGA+PE LLESELFGH +GAFTGA+ NR G F+ A+GG Sbjct: 190 ELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGG 249 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 ++FLDEIGDM LQVK+LRV+QE++ +G + I+ +VRII+ATH++L A+ FR Sbjct: 250 SIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFR 309 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YR+NV+ + +PAL ER DI +LANH L++ A+ K V F+ +A+ ++ WP Sbjct: 310 EDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWP 369 Query: 351 GNVRQLVNVIEQCVALTSS--------PVISDALVEQALEGENTALPT----FVEARNQF 398 GNVR+L N+IE V + P ++ + +P F + QF Sbjct: 370 GNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQF 429 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E N L K L T G AA++ NRT + L R Sbjct: 430 EKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKR 465 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 238/377 (63%), Gaps = 13/377 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + + L + L +GY V G + + L + DL+ISD++M +DG L Sbjct: 30 ILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFGL 89 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE----- 122 +++ +I++TA + AV A ++G + ++TKP + + +++ALE Sbjct: 90 LDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDLR 149 Query: 123 ----QSAPATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 Q +R+ A I+ +S +M + + V+ S V+VLI G+SGTGKE+ A+AI Sbjct: 150 RENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAI 209 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R+ +PF+AI CGA+PE LLESELFGH +GAFTGAV ++GLF+ A+GGTLFLDEI Sbjct: 210 HYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEI 269 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++P +QVKLLRV+QE + R +G RD+ ++VR+++AT++DL +A+ +FREDLYYRL Sbjct: 270 AELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRL 329 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ + +P L +R EDIPLL +H L++ F M+R + WPGN+R+L Sbjct: 330 NVIQVGLPPLRDRREDIPLLVSHFLQKLT---PGFSTTIPDGVMRRFLDYHWPGNIRELE 386 Query: 358 NVIEQCVALTSSPVISD 374 N +E+CV L I++ Sbjct: 387 NTVERCVVLGGKGEITE 403 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 185/481 (38%), Positives = 264/481 (54%), Gaps = 51/481 (10%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + ++ +VDDD + +L +T EG E + L+ LN E+ D+++SD+RM +MD Sbjct: 2 QKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL-- 121 G+ L I++ P +PVII+TAH + AV A QQG F +L KP D D I+ A+ Sbjct: 62 GLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITH 121 Query: 122 --EQSAPATDERWREAI---VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 EQ P E +++ + +P M + +++S +SVLING+SGTGKE+ A A Sbjct: 122 YREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR PFIA+N A+P+ L+ESELFGH +GAFTGA R+G F+ A GG+LFLDE Sbjct: 182 LHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q +LLRVL E + +G + ++VRII+ATH+DL K + G+FREDLY+R Sbjct: 242 IGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYHR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ +++P L +RTEDIP LA + L++ A+ ++ ++K +M W GNVRQL Sbjct: 302 LNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQL 361 Query: 357 VNVIEQCVALTSSPVI-----------------------------------SDALVEQAL 381 NV +T+S I +AL E Sbjct: 362 ENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGKE 421 Query: 382 EGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 N ALP QFE L L T+G+ AAR+ G R + L EL D Sbjct: 422 NILNDALP-------QFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLK--ELGIED 472 Query: 442 F 442 + Sbjct: 473 Y 473 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 256/449 (57%), Gaps = 31/449 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LLL++DD G L L +EGY+V G GL D+VISDL++ +DG++L Sbjct: 7 LLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPGLDGLEL 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + + +P +P+I++TAHG+ A+ AT+ G + +L KP + + L ++ A+E S Sbjct: 67 VKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAVESSRLM 126 Query: 128 TDE-------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 ++ R AI+ S LM + ++ VA ++VLI G++GTGKE+ A+AI+ Sbjct: 127 SEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIARAIYQH 186 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R++ PF+A+NC A+PE LLESELFGH RGAFTGA R G F+ A GGTLFLDEIGDM Sbjct: 187 SDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFLDEIGDM 246 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q KLLRVLQE+ + LG I I+ R+I+ATHRDL KA+ +FREDLYYRLNV Sbjct: 247 SLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLYYRLNVA 306 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +K PAL R+EDIP L +L++ + +A++ L WPGNVR+L NV+ Sbjct: 307 VIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVRELENVV 366 Query: 361 EQCVALTSSPVISD-------ALVEQALEGENTALPTFV-----EAR------------N 396 Q + L IS A V +A+ G N ++ + AR Sbjct: 367 RQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEGVHATVIE 426 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNR 425 + E + +++ +GN AAR G +R Sbjct: 427 EVERELFGQAIELAQGNQAKAARWLGVSR 455 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 181/445 (40%), Positives = 259/445 (58%), Gaps = 18/445 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+DD + +L L G+ V A G+ + VD+VI+DLRM ++DG L Sbjct: 21 VLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFDL 80 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 +I P+I++TA GSI A+ A + G ++TKP + D L ID AL + A Sbjct: 81 IRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAERALR 140 Query: 126 PATDERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D RE I+ S M LL VA S SVL+ G+SGTGKE+ A+AI Sbjct: 141 RRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARAI 200 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR F+A+N A+PE L+ESELFGH +GAFT A ++ GLF A+GGT+FLDEI Sbjct: 201 HYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDEI 260 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 +M APLQ KLLR LQE+++RP+G+ R ++VR+++AT+RDL + MA G+FREDLYYRL Sbjct: 261 AEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYRL 320 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRAFSTDAMKRLMTASWPGNVRQ 355 NV+ +++P L R +DI LA H L A+ R P VR + + + L + WPGNVR+ Sbjct: 321 NVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVR-LAAETQRILHSYPWPGNVRE 379 Query: 356 LVNVIEQCVALTSSPVIS-DALVEQALEGENTALPTFVEARN----QFELNYLRKLLQIT 410 L NVIE+ + L +I+ + L E ++ + AR Q E ++ ++L+ Sbjct: 380 LANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLEREFIERILKEE 439 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 GN T A+ G +R Y+ L + Sbjct: 440 GGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 162/450 (36%), Positives = 261/450 (58%), Gaps = 17/450 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+++D+ + L L + GY+V AE G EG+ ++ +++ D+V++D+R+ DG+++ Sbjct: 4 ILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLEV 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++K QP V+++T + + AV A + G F ++ KP + L ++ L Q+A Sbjct: 64 LKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAHV 123 Query: 128 TD-ERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D +R RE IV+ SP ML + ++ A++D SV+I G+SGTGKE+ A A+ Sbjct: 124 EDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAV 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 HN SPR KPFI +NC A+PE LLE+E+ G+ +GAFTGA+ ++G + A+GGT F DEI Sbjct: 184 HNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM PLQ KLLRVL+ R +G + +++R I AT R LP + +G+FREDLYYR+ Sbjct: 244 GDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRI 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ + +P L ER +DIPLL + + + V + +AM+ L + +PGNVR+L Sbjct: 304 NVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELK 363 Query: 358 NVIEQCVALTSSPVISDALV-------EQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 + +E V S VI+ + + AL+G +R + E + +L+ T Sbjct: 364 HAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKKT 423 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 G AA+ G +R ++ L + +D + Sbjct: 424 GGRKMAAAKALGISRETLWRKLKEYNVDTD 453 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/380 (41%), Positives = 240/380 (63%), Gaps = 13/380 (3%) Query: 7 HLLLVDDDPGL----LKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 H L+VDD+ L + +L + +++ A +G E L + +++ DLV+ D++M EM Sbjct: 6 HTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKMPEM 65 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G++ I++ P V+++TAH ++ DAV A ++G + ++ KPV L + + +LE Sbjct: 66 NGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRKSLE 125 Query: 123 ---------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 S P D+ IV S M + + + D +VL+ G++GTGKE+ Sbjct: 126 ARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELV 185 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH SPR S F+AINCGA+PE L+ESELFGH +GAFTGAV + G FQ A GTLF Sbjct: 186 ARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLF 245 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +QVKLLRVLQERK P+GSNR++ RII+AT+R+L K M GEFREDL Sbjct: 246 LDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDL 305 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+ + +P L ER +DI LA + +++ +++H + A + +A+ L + WPGN+ Sbjct: 306 FYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWPGNI 365 Query: 354 RQLVNVIEQCVALTSSPVIS 373 R+L N+IE+ + +S I+ Sbjct: 366 RELENIIERSFIVENSHQIT 385 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 195/467 (41%), Positives = 268/467 (57%), Gaps = 43/467 (9%) Query: 10 LVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFA 69 L D L +LL + L E V TAE GA GL +L + LVI+DLRM + GM+L Sbjct: 16 LEDTRTSLQELLQMSLKLE---VDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGMKLIE 72 Query: 70 EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPATD 129 IQ + + VI+ T +G+I DAV A + GV+ FLTKP D L + AL A + Sbjct: 73 TIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRALQDE 132 Query: 130 ---------ERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 ER + +++RSP M+ L E VA + +VLI G++GTGKE A+AIH Sbjct: 133 VAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIARAIHQ 192 Query: 180 ASPR-NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 AS + F+A+NCGAL E LLESELFGH +G++TGA R G F+ A GTLFLDEIG Sbjct: 193 ASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFLDEIG 252 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 D+P +QVKLLRVLQER+ +G I+I+VR+++ATH+D+ K + G+FREDLYYRLN Sbjct: 253 DVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLYYRLN 312 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR------AFSTDAMKRLMTASWPGN 352 VV + IP L ERTEDIP+L +H ++ FVR S +A+ L WPGN Sbjct: 313 VVRIDIPPLRERTEDIPVLVSHFCQK-------FVRVGQKPPTISPEALDLLTKCPWPGN 365 Query: 353 VRQLVNVIEQ-CVALTSSPVISDAL-------VEQALEGE-------NTALP-TFVEARN 396 VRQL N IE+ CV + + L E + G+ N LP E Sbjct: 366 VRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTA 425 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 FE Y+R+ L+ ++G+V A++ G +R ++++++D FK Sbjct: 426 AFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKIDKEQFK 472 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/379 (41%), Positives = 237/379 (62%), Gaps = 14/379 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L L + VVTAESG + L ++ D+VI+D++M ++ G+ + Sbjct: 4 ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGIDI 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------- 120 + +++ P V+++TA GSI +AV A + G F++L KP D + I+ A Sbjct: 64 LRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSLV 123 Query: 121 -----LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L Q D R I+ SP+M ++L VAQS+ SV ING+SGTGKE+ AQ Sbjct: 124 QENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQ 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R+ PFI +NC A+PE L+ESE FGH +GAFTGA R G F+ A GTL LD Sbjct: 184 AIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI ++P +Q KLLR +QE++ +G ++ I ++VR+IS ++RD+ A+A REDLYY Sbjct: 244 EITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 RLNVV + +P L +R EDI LA++ L + E HK + FS +++K+L+ +WPGNVR Sbjct: 304 RLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQ-AKTFSKESIKKLVGYAWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVIS 373 +L N++E+ V +T++ I+ Sbjct: 363 ELANIVERAVVMTTNSEIT 381 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/374 (43%), Positives = 237/374 (63%), Gaps = 5/374 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + A L+VDD+P + +LL + L +A + E +L RE DL ++D+R+ Sbjct: 1 MSRQKA--LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L IQ+ P PV ++TA+GS+ A+ A + G F FLTKPVD L + + A Sbjct: 59 DGSGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATA 118 Query: 121 LEQSAPATDER-WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 L P +E ++ SP M L Q +A+S V I+G+SG+GKE+ A+ IH Sbjct: 119 LRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLIHE 178 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 PR +PF+ +NCGA+P +L+ESE FGH +G+FTGA+ +++GLFQAA GGTLFLDE+ D Sbjct: 179 QGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVAD 238 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLLR +QE+ VR +G +++ ++VRI+ ATH+DL + G FR+DLYYRLNV Sbjct: 239 LPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNV 298 Query: 300 VSLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 + L++P L ER EDIPLLA +L++ A + P R + DA ++L +PGNVR+L N Sbjct: 299 IELRVPPLRERREDIPLLAERILKRLAGDTGLPAAR-LTGDAQEKLKNYRFPGNVRELEN 357 Query: 359 VIEQCVALTSSPVI 372 ++E+ L I Sbjct: 358 MLERAYTLCEDDQI 371 >UniRef50_D0LYF6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 Length = 462 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 182/454 (40%), Positives = 261/454 (57%), Gaps = 20/454 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 + P +LLV+D+ L + L L GY+V +A + AEG ++ VD+ + D R+ Sbjct: 5 VDKSPRSVLLVEDEAPLRRALERFLRRAGYAVRSAGTLAEGRNAFDQAAVDVALVDFRLP 64 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G L Q V +T++ + P AA G L KP D L + I+ A Sbjct: 65 DGSGADLIRWAISQQRAQSVYGMTSYTNGPAVRAARAAGCLGILEKPFDISVLIKLIEGA 124 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLL-EQARL---------VAQSDVSVLINGQSGTGK 170 EQ+ DE+ + R ++L E +RL VA ++ +VL+ G+SGTGK Sbjct: 125 -EQAPEGEDEKGEDFAAWRVRNACQILGEDSRLMDALHTIWEVADTECTVLVTGESGTGK 183 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+FA+A+H+ASPR PF+A+NC A+PE ++E+ELFGHARGAFTGA +NREG A GG Sbjct: 184 ELFARALHDASPRAGGPFVALNCAAIPESMVEAELFGHARGAFTGAHANREGRVAGASGG 243 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIGDMP Q KLLR+LQ+R + P+GS+R +DI+VR+++AT++DL + G FR Sbjct: 244 TLFLDEIGDMPLAAQAKLLRMLQDRTIMPVGSDRPVDIDVRVVAATNQDLESMVEAGRFR 303 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL+YRLNV+ +++P L ER +DI LA L QA R+ V F + AM+ + WP Sbjct: 304 GDLFYRLNVIPVELPPLRERGDDIARLAEAFLHQANRRNGRNVTGFESAAMRAMREHYWP 363 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA----LVEQALEGENTALPT-----FVEARNQFELN 401 GNVR+L ++IE+ V L S +I++A V G + LPT A E Sbjct: 364 GNVRELSHLIERTVLLKKSGLIAEADLRLRVAARGTGGHQVLPTVEGLDLRSAIEDVERR 423 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + + L T GN T AA + G NRT + + +H Sbjct: 424 LIEEALDRTGGNRTEAAALLGVNRTTLVEKIRKH 457 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 260/463 (56%), Gaps = 42/463 (9%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L+ DD+ G+ + L EGY V A S E LR+ + DL + D+ + E DG+ Sbjct: 3 HILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDGLS 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 EI ++ V++++ HG+I AV A + G ++ KP D + +AL+ Sbjct: 63 YLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLRGL 122 Query: 127 ATDER-WREAIVTR------SPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + R RE + R SP + L E VA ++ VLI G++GTGKE+ A+++H Sbjct: 123 ERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSLHE 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R S PF+ +NC A+PE L+ESELFGH +GAFTGA+S R G F+ A GG LFLDEIGD Sbjct: 183 GSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGD 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q ++LRVLQER++ +G R I ++VR+++AT+RDLP +AR EFREDL+YRLNV Sbjct: 243 MALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAER--HKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VS+++P L ER DIP+L H + H+P + FS +A++ L +WPGNVR+L Sbjct: 303 VSIRVPPLRERLSDIPILVEHFVEILCRDFGHRP--KLFSREALEALCERTWPGNVRELK 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTA------------------------------ 387 N +E+ + L PVI +E A+ G Sbjct: 361 NTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPD 420 Query: 388 LPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 LP EAR++FE Y+ +L +GN+ AA+ G +RT ++ Sbjct: 421 LP-LREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHR 462 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 237/385 (61%), Gaps = 21/385 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++L+V+D ++L L EG++V A SG E ++ + DLV+ D +M MD Sbjct: 2 KSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP-------------VDK 110 GMQ+ E++++ P V+I+TA+G+I AV A + G ++TKP ++ Sbjct: 62 GMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAER 121 Query: 111 DALY---QAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 L + + L+ TD AI+ S M L A VA S +VL+ G+SG Sbjct: 122 RTLIRENEILRRQLKDQGVTTD-----AIIFTSQKMAALTSMAARVASSRATVLLQGESG 176 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+ IH SPR+++P I +NCGALPE L+ESELFGH +GAFTGA S R G F+ A Sbjct: 177 TGKELLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEA 236 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGTLFLDEIG++ P+QVKLLR LQER+ + +G N +I +VRIISAT+RDL + Sbjct: 237 DGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEE 296 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 +FREDLYYRLNVV + IP L ER EDIP L +H L + A + + S++A LM Sbjct: 297 KFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKY 356 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVI 372 +PGNVR+L N+IE+ V + + +I Sbjct: 357 DYPGNVRELENIIERAVVIARNEII 381 >UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ1_9BACT Length = 474 Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 181/464 (39%), Positives = 269/464 (57%), Gaps = 28/464 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE---MDG 64 LL+VDDDP +L+ + L Y V+TA S + + + RE+ + + DL +D DG Sbjct: 12 LLVVDDDPAILRQMAW-LFKPDYPVLTAGSAGDAIDIFLRERPAVAVLDLGLDREAGKDG 70 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L + +P IIL+ + P A+ A + G + L K VD + L + + A ++ Sbjct: 71 VDLLRFFSEAEPAFHGIILSGDITRPRALEAVRLGAYDLLEKTVDPEELRRVVARAYNRA 130 Query: 125 ----------APATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 PA++ A IVT++P + LL R +A +DVSVLI G+SGTGKE+F Sbjct: 131 RLSRQTRAEPGPASEIAPTAAGIVTKNPRIEELLRMLRKIAVTDVSVLITGESGTGKELF 190 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A H AS R PF+AINCGA+PE L+ESELFGH +GAFTGA +R G F+AA+ GTLF Sbjct: 191 ARACHQASLRKEGPFVAINCGAIPENLMESELFGHEKGAFTGATESRGGKFEAADRGTLF 250 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ ++P LQVKLLRVLQ++ V +G +++RII+AT++ LP+ MA+G FREDL Sbjct: 251 LDEVAELPLDLQVKLLRVLQDKVVERVGGRSGKKLDIRIIAATNQPLPEMMAQGRFREDL 310 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 YYRL+V+S +P L ER ED+ +LA + R E K + FS++ + + + WPGN Sbjct: 311 YYRLSVMSFVLPPLRERGEDVTILARYFFDRFRTEYQKTQLVDFSSECLALIHSYDWPGN 370 Query: 353 VRQLVNVIEQCVALTSSPVISDALV---------EQALEGENTALP---TFVEARNQFEL 400 +R++ N I + V + I+ A + E + LP EAR + E Sbjct: 371 IREMENRIRRAVIVAVDRFITPADIDITRDLRPPEPERSPASAPLPPGRNLSEAREEAEK 430 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L + Q +GN++ AR+ G +R + L+ +H L+ +FKE Sbjct: 431 RMLTEAFQAARGNISQVARIIGTSRPTVHALIKKHGLNPREFKE 474 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 160/377 (42%), Positives = 238/377 (63%), Gaps = 13/377 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L + L EGY+V A+ G L +L RE DL+ISD+RM +G++ Sbjct: 3 RILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++++P +PV+++TA S DAV+A + G + ++TKP D + + AL P Sbjct: 63 LLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQP 122 Query: 127 -----------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 AT+E E I+ SP M ++ + VA + +VLI G+SGTGKE+ A+ Sbjct: 123 LPAKPGESEVAATNEF--EGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH SP + F+ I C A+PE L ESE+FGH +GAFTGA S+R GLF+ A GT FLD Sbjct: 181 AIHRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +Q KLLRVLQER+++ +G+ I +R+ISAT++DL + + G FREDL+Y Sbjct: 241 EIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV +++P L ER D+PLL +H L + A + S+ AM+ L+ +PGNVR+ Sbjct: 301 RLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVI 372 L N+IE+ VA+ +S +I Sbjct: 361 LENIIERGVAMENSQII 377 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 307 bits (786), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 161/376 (42%), Positives = 234/376 (62%), Gaps = 3/376 (0%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDDD + + + + G SV A G EG ++ DL++SD+RM Sbjct: 1 MDLTSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM + IQ P+ +TA G++ +AV A + G + ++ KP + + + + Sbjct: 61 NVDGMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 121 LE--QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 LE ++APA +R + + RS M +L AR VA S+ +VLI G+SGTGKE+FA+ IH Sbjct: 121 LEIEETAPAV-KRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIH 179 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R+S F+A+NC ALPE L+ESELFG+ +GAFTGAV+ + G F+ A+GGT+ LDE+G Sbjct: 180 ENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELG 239 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++P LQ KLLRVLQE++V LG + INVRI++ T++ L K + G FREDLYYRLN Sbjct: 240 EIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLN 299 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+S+++P L ER EDI LA + A+ + + DA+K L+ WPGNVR+L + Sbjct: 300 VISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEH 359 Query: 359 VIEQCVALTSSPVISD 374 IE+ V L VIS+ Sbjct: 360 TIERAVVLCRDGVISE 375 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 307 bits (786), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 164/388 (42%), Positives = 243/388 (62%), Gaps = 10/388 (2%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + KP +L+ DD+P + +L+ L+ + VVTA G E L+V + VD + D+RM + Sbjct: 16 NEKPV-VLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG+ + ++ V +PVI++TA+G+ + A ++G + F+TKP D D L + + AL Sbjct: 75 VDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 EQSA-----PATDERWREAI-VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + S P + ++ V S M + + VA +DV+VLI G+SGTGKE+ ++ Sbjct: 133 DYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSR 192 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH SPRN PF+ +NC A+PE LLESELFG+ +GAFTGA + G F+ A GT+ LD Sbjct: 193 AIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLD 252 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM LQ K+LRVLQE + +G R I ++VR+++AT++DL + G FREDLY+ Sbjct: 253 EIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYF 312 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV +++P L ER EDIPLLA+H +++ A V + + M LM +PGNVR+ Sbjct: 313 RLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRE 372 Query: 356 LVNVIEQCVALTSSPVIS-DALVEQALE 382 L N+I + VAL S V++ D L Q +E Sbjct: 373 LENIIARAVALCSGKVLTLDVLPPQVVE 400 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 257/452 (56%), Gaps = 23/452 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L VDD+ + L L++ G+ V A G + LR N + D+V+SDL M E DG+ Sbjct: 4 ARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGL 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L +++ P PV+ LT G+I AV + ++G + F+ KP+D L ID ALE+ Sbjct: 64 WLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKK- 122 Query: 126 PATDERWREA--------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E RE ++ +S M +++E VA S SV I+G+SGTGKE Sbjct: 123 ----ETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKE 178 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + ++A+HN S R KPFIAINC ++P L+ESELFGH RGAFTGA R G+F+ A GGT Sbjct: 179 VVSRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGT 238 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G++P LQ KLLRVL+E K+R LG +I+++VR++ AT+RDL + + G FRE Sbjct: 239 LFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFRE 298 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RLNV + +P L ER +D+P+L H + + V +AM+ L WPG Sbjct: 299 DLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPG 358 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV----EARNQFELNYLRKLL 407 N+R+L N +E+ V L +I+ + + G++ TF + + E Y+ L Sbjct: 359 NIRELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSL 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 Q N A + G + Y L+R+ +A Sbjct: 419 QRNGNNKARTAEVLGVSEKTLYNKLNRYAAEA 450 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 307 bits (786), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 181/458 (39%), Positives = 272/458 (59%), Gaps = 24/458 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL--NREKVDLVISDLRMDEMDG 64 +L+VDD+PGL ++L + +GY VV A + + N + LV++DL M + G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + VI++TAH ++ A+ A + G + F+TKP L ALE+S Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 125 A-PATDERWREAI-----VTRSPL-----MLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + A ++R R + +R PL M R+ E +A + +VL+ G+SGTGKE Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ S R ++PF+ +NCGALPE L+ESELFGH +G+FTGA + GLF+ A+GGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++PA LQVKLLRVLQERKVRP+G+ +I ++VR+++AT+RD+ + +G FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+ +++P L ER DI LA LR+ A VR +TDA++ L S+PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTA-------LP----TFVEARNQFELNY 402 R+L N++E+ VAL P I + A+ G + + LP E + E Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALDEVIGEVERRL 433 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L+ T G AA++ G + L++H L A+ Sbjct: 434 ILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHALAAD 471 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 307 bits (786), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 263/464 (56%), Gaps = 31/464 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ +++ L + Y+V +A G E L+ ++ D++I D+ M +MDG+ Sbjct: 3 ARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++ P + VI++T I AV A + G F +L+KP D D L ++ ALE+ Sbjct: 63 EVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQ 122 Query: 126 PATDER---------WR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + R +R E I+ SP M + A ++ +VLI G+SGTGKE+ A+ Sbjct: 123 LMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIAR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R +PF+ ++C L E LLESELFGH +G+FTGAV+N+ G+F A GTLFLD Sbjct: 183 AIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E G++P Q KLLRV+QER+ RP+G+ + NVR+I+AT++DL +A G FREDLYY Sbjct: 243 EFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLYY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 R+NV + PAL ER +DIP LA H L+ +E KP V S AM LM WPGNVR Sbjct: 303 RINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKP-VSEISEGAMSLLMNYGWPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKL-------- 406 +L N +++ V L+S +I A + + +N+ R EL ++K+ Sbjct: 362 ELENTMQRAVILSSDGIIRQAHLASII--DNSPRLDLDVPRTSDELKRIKKIAREKSVEE 419 Query: 407 ---------LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 L+ NVT +A G RT F L+ ++ + D Sbjct: 420 VEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNIRVRD 463 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 306 bits (785), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 175/457 (38%), Positives = 265/457 (57%), Gaps = 35/457 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSE--GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +LL+VDD+ + + G R ++ G+S TAE+ + ++L+ VD+++ DLR+ + G Sbjct: 14 NLLIVDDERVVRE--GCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGG 71 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++ +I++ +P VI++T + ++ AV A + G F ++TKP + D L +D Sbjct: 72 LEALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHL 131 Query: 125 APATDERW-REAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 T+ R RE + V R+P M RL A S VLI G+SGTGKE+ A Sbjct: 132 KLTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVA 191 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H KPFI ++CG+L L+ESELFG+ +GAFTGA +++GL A+GGT+FL Sbjct: 192 RAVHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFL 251 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++P LQ KLLR LQE+++RP+G R + INVRI++AT+RDL +A+ +G FR DLY Sbjct: 252 DEIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLY 311 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +RLNV++L+IP L +R +DIPLL H L + ER F R S +A+K ++T WPGNVR Sbjct: 312 FRLNVLTLRIPPLRDRKQDIPLLVGHFLER-TERATGFQRNISDEALKLMLTYDWPGNVR 370 Query: 355 QLVNVIEQCVALTSSPVIS----------------DALVEQALEGENTALPTFVEARNQF 398 +L + +++ ALTS P I+ L QA + E Q Sbjct: 371 ELEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQA 430 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 L + +L G+ AAR+ G +T Y+ L + Sbjct: 431 ILEAIERL----HGDKLEAARLLGIGKTTLYRKLKEY 463 >UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SE88_METPP Length = 482 Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 164/395 (41%), Positives = 240/395 (60%), Gaps = 12/395 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DDD G+ + + L GY+ V +G EGL L + D+VI+DLR+ + G+ Sbjct: 19 QVLVIDDDHGIGDCVEMLLQRAGYTCVITRTGGEGLAQLRSREFDMVITDLRLPDASGLD 78 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + A + P VI++T+ S+ A+ A + G ++ KP D D +++ AL + Sbjct: 79 IVAASKAANPETQVILMTSFSSVESAIEALRLGANDYVIKPFDNDDFLFSVERALGERRT 138 Query: 127 ATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + AI+ S + RLL + VA ++ +VLI G+SGTGKE+ AQA Sbjct: 139 RMENVALKRSLRKAYSQNAIIGESDGVKRLLGMIQRVAATEANVLIQGESGTGKELVAQA 198 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH R +PF+A+NCGA+P +L+ESELFGH +GA+TGA S EGL + A GGTLFLDE Sbjct: 199 IHFGGNRAHRPFVAVNCGAIPAELIESELFGHVKGAYTGAASASEGLIREASGGTLFLDE 258 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +MP +QVKLLRVLQER+VRPLGS + + R ++A++R+L ++ G FR DLYYR Sbjct: 259 ISEMPLNVQVKLLRVLQERQVRPLGSGQSYITDTRFLAASNRNLKESAESGSFRADLYYR 318 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+++ +P L ER DI LLA H ++ + + V D + L SWPGNVR+L Sbjct: 319 LNVITIHVPPLRERGADIELLARHFMQLFSRKFGSRVSGMDRDFIDFLHRHSWPGNVREL 378 Query: 357 VNVIEQCVALTSSPVISDALVEQ--ALEGENTALP 389 NVIE+ V L + ++S A +E+ AL + T LP Sbjct: 379 QNVIERAVILADADILSAADLEETLALPAKETHLP 413 >UniRef50_Q1NUE1 Helix-turn-helix, Fis-type n=4 Tax=Deltaproteobacteria RepID=Q1NUE1_9DELT Length = 569 Score = 306 bits (785), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 171/381 (44%), Positives = 238/381 (62%), Gaps = 11/381 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD LL LRL G+ ++ + L +L +VDL++SD+ M E+DG+ Sbjct: 88 ATILVVDDQESERYLLELRLGKLGFRALSVDGPLAALELLATTEVDLILSDMVMPELDGL 147 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L +++ +P I++TAHG++ AVA+ +QG +L KPV DAL I +L Sbjct: 148 ELLRRVRRHHGAIPFILVTAHGAVDSAVASIKQGADDYLLKPVTNDALQAVIAKSLSYRR 207 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIFA 174 + + + +A IVT SP M R+LE+AR VA S ++ V I G+SG GKE+ A Sbjct: 208 LSEENKKLKAHLRELYSFQNIVTASPGMQRVLEEARKVAASPLTTVAIYGESGVGKEVLA 267 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S + ++ F+A+NC +P LLESELFGH RGAFTGA +R G F A GGTL L Sbjct: 268 RAIHFGSEKLAQNFVAVNCAGVPANLLESELFGHVRGAFTGAEQDRSGKFDQARGGTLLL 327 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP LQ KLLRVL++R+ +PLGSNR+I + R+I+ATHRDL + + RG FR D+Y Sbjct: 328 DEIGDMPLELQAKLLRVLEQRRYQPLGSNREIPADFRVITATHRDLAELVDRGLFRADIY 387 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+N L IP L +R EDIPLLA + L + E+ S A+ L +WPGNVR Sbjct: 388 HRINAFPLLIPPLRQRPEDIPLLAANFLARHGEQTGGRPPELSPAALAALTRYTWPGNVR 447 Query: 355 QLVNVIEQCVALTSSPVISDA 375 +L N IE+ V L S ++ A Sbjct: 448 ELKNRIERAVILAGSEQLTPA 468 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 306 bits (785), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 156/372 (41%), Positives = 230/372 (61%), Gaps = 10/372 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +++VDDD + L L GY V +G + + + +E D++ D++M MDGM+ Sbjct: 6 IMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEA 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-QSAP 126 +++ + VI++TA+G+I AV A ++G + ++ KP D + I E Q Sbjct: 66 LEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNERQKLI 125 Query: 127 ATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A ++ WR A + +++ M ++ EQ + +AQS SVLI G+SGTGKE+ A+AI Sbjct: 126 AENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAI 185 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR KPFI +NC AL E LLESELFGH RGA+TGAV+ R G F+ A GTL LDE+ Sbjct: 186 HYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEV 245 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ +Q KLLRVL+E + +G + I I+VRI++ T+RDL K + +G FREDL+YRL Sbjct: 246 SEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRL 305 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + +P L ER EDIPLLAN L + + + V++ AM L +WPGNVR+L Sbjct: 306 NVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELK 365 Query: 358 NVIEQCVALTSS 369 N++++ V + SS Sbjct: 366 NIMQRAVVMGSS 377 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 151/364 (41%), Positives = 237/364 (65%), Gaps = 5/364 (1%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 ++VDD+ + +LL + L+ G A + +E + + DL + DLR+ + G+ + Sbjct: 4 IVVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDIL 63 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-----LEQ 123 +I++ P V+I+TA S AV A + G + +++KP + + L I + LE+ Sbjct: 64 KQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLER 123 Query: 124 SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 +E E + +S + + + + +A D++VLI G+SGTGKE+ A+ IH S R Sbjct: 124 RICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSR 183 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 +KPF+AINC +LP +LLESELFG+ +GAFTGAVS+++GL + A GGTLFLDEIG+MP P Sbjct: 184 KNKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMP 243 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 LQ KLLR L+E+ +RPLGS ++I ++VRIISAT+R+L + + +G FREDLYYRL + +K Sbjct: 244 LQAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIK 303 Query: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 +P+L ER EDIPLL +L++ ++ ++ S D MK L++ + GN+R+L N++E+ Sbjct: 304 MPSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKA 363 Query: 364 VALT 367 V L+ Sbjct: 364 VILS 367 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 167/467 (35%), Positives = 268/467 (57%), Gaps = 45/467 (9%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+ G+ ++L L EG+ + A + + L+++ E D V+ D+R+ + DG+ Sbjct: 2 SKVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA----- 120 ++ +++++ +PVI++TA G+ A+ A +QG +L KP++ D L A+ + Sbjct: 62 EVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQR 121 Query: 121 -----------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 L+Q + D + + +S M + + V SD++VLI G+SGTG Sbjct: 122 LVSEVAILREELDQETDSVD-----SFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTG 176 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+ IH+ S R+S+PFI INC +PEQL+ESELFGH +G+FTGAVS + G F+ A Sbjct: 177 KEVVARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHN 236 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 G +FLDEIG++P Q KLLRVLQE++ +G + I+++VRI++AT+R+L + G+F Sbjct: 237 GIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKF 296 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVV++K+P L ER EDI LL N+ +++ A ++ + S +AM +W Sbjct: 297 REDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAW 356 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN------------- 396 PGNVR++ NV EQ V + + V+ L + L G F+E +N Sbjct: 357 PGNVREIKNVCEQAVVMARNSVL--MLDDMPLIGNGNG---FLEFKNNAKISLDTNDKRS 411 Query: 397 ------QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + E + K L N + A+ G NR Y + ++L Sbjct: 412 LKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_P10046 C4-dicarboxylate transport transcriptional regulatory protein dctD n=160 Tax=cellular organisms RepID=DCTD_RHILE Length = 448 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 179/449 (39%), Positives = 249/449 (55%), Gaps = 29/449 (6%) Query: 10 LVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFA 69 L+DDD L + L G+SV + L L + V++D+RM E+DG+QLFA Sbjct: 9 LIDDDKDLRRATAQTLELAGFSVSAYDGAKAALADLPADFAGPVVTDIRMPEIDGLQLFA 68 Query: 70 EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS----- 124 +Q + +PVI++T HG IP AV A Q G + F+ KP D L Q++ A E+ Sbjct: 69 TLQGMDVDLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSVRRASEKRRLVLE 128 Query: 125 -----APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 A D + ++ ++P+M L R +A +DV VL+ G++G+GKE+ AQ +H Sbjct: 129 NRMLRKAAEDAQENLPLIGQTPVMENLRNILRHIADTDVDVLVAGETGSGKEVVAQILHQ 188 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R F+A+NCGALPE ++ESELFGH RGAFTGA R G + A GGTLFLDEI Sbjct: 189 WSHRRKGNFVALNCGALPETVIESELFGHERGAFTGAQKRRTGRIEHASGGTLFLDEIES 248 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MPA QVK+LRVL+ R++ PLG+N +N+R+++A DL RG+FREDLYYRLNV Sbjct: 249 MPAATQVKMLRVLEMREITPLGTNEVRPVNLRVVAAAKIDLGDPAVRGDFREDLYYRLNV 308 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V++ IP L ER +DIPLL +H +AAER + V S D + L + +WPGNVR+L + Sbjct: 309 VTISIPPLRERRDDIPLLFSHFAARAAERFRRDVPPLSPDVRRHLASHTWPGNVRELSHY 368 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALP------TFVEARNQFELNYLRKLLQITKGN 413 E+ V G A+P T E ++E +R L G+ Sbjct: 369 AERVVLGVEG-------------GGAAAVPPQPTGATLPERLERYEAEIIRDTLSANDGD 415 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDF 442 V G R FY L RH ++ + Sbjct: 416 VRRTIEALGIPRKTFYDKLQRHGINRGGY 444 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/471 (38%), Positives = 269/471 (57%), Gaps = 35/471 (7%) Query: 8 LLLVDDDPGLLKLLGL-RLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+P L++L L L +EGY V A +G +G++ + + DLVI+DLRM DG+Q Sbjct: 5 VLIIDDEP-LMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDGLQ 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID-----DAL 121 + ++ VI++TAHGS+ AV A + G ++TKP D L +D AL Sbjct: 64 VVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKVQAL 123 Query: 122 EQSAPATDERWR-----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 Q A + + +V ++ M ++LE+ +LVA +D +VLI G+SGTGKE+ A A Sbjct: 124 RQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR + I ++C ALPE LLE+ELFGH RGAFTGA+ R G F+ A GTLFLDE Sbjct: 184 IHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ +QVKLLRVLQE++ +G I +VR++ AT ++L + + G FREDL+YR Sbjct: 244 IGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + +P L ER EDI +LA HLL+++ R + ++ FS A L+ S+PGNVR+L Sbjct: 304 LNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNVREL 363 Query: 357 VNVIEQCVAL---------------TSSPVISDAL------VEQALEGENTA--LPTFVE 393 N IE+ VAL T P + L ++ + A T E Sbjct: 364 ENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAE 423 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 R + E Y+ +L+ + T A++ G +R ++ R+ L D E Sbjct: 424 VRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGLATPDTDE 474 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 177/457 (38%), Positives = 265/457 (57%), Gaps = 26/457 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 ++ K A +L+++DD L +LL + LT GY V +A G EGL +E ++V+ D+RM Sbjct: 5 VTRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMP 64 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+++ +++ VI+ T HG+I AV + G + +LTKPV D L ID A Sbjct: 65 GMDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKA 124 Query: 121 LEQS---------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E++ + + IV +S ++ ++LE R +D VLI G+SG GKE Sbjct: 125 NEKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKE 184 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+A+H+AS R +KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ GT Sbjct: 185 LFARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGT 244 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LF+DEI +MP +QVKLLR+L+ R +G N DI ++VR + A+++ L + RGEFRE Sbjct: 245 LFMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRE 304 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL++R+N++ + IP L ER EDI L+ + L+ A E S +AM L SWPG Sbjct: 305 DLFHRINLLPINIPPLRERPEDIIPLSYYFLKSANESGSANWE-ISEEAMAALCAYSWPG 363 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV---------EQALEG--ENTALPTFVEARNQFEL 400 NVR+L N I + L + +IS L+ A+ G + LP +V E Sbjct: 364 NVRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWV-----VER 418 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 +Y++K+L+ +GN + AA++ +R Y L R+ L Sbjct: 419 DYIQKVLEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 266/460 (57%), Gaps = 26/460 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+P + + L+ +GY V SG EGL+ L DLV+ D++ ++G+ Sbjct: 4 SRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHINGI 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-- 123 + E++K +P + VII+T +G++ +AV A + G F F+TKP ++ L ++ ALE Sbjct: 64 DILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALESIK 123 Query: 124 --------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 D+ I+ + + ++ E+ V+ D +VL++G+SGTGKE+FA+ Sbjct: 124 LVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAK 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R S F+A++C ++ESELFGH +GAFTGA + EG+F AA GTLFLD Sbjct: 184 AIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+G++ +Q KLLRVL+ + +P+GSN+ R+++AT+++L + + G FREDL+Y Sbjct: 244 EVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV +KIP L ER +D+P +A H LR + + FS DA+ L+ WPGNVRQ Sbjct: 304 RLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGNVRQ 363 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTAL----PTFVE----ARNQF--------E 399 L NV+E+ V + + + LE + AL P +E AR F E Sbjct: 364 LKNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPLTLEELKRARKDFLEDSFRPVE 423 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 +L + L KGN+T AA+ G R+ F ++ ++++ A Sbjct: 424 RLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKKNDIHA 463 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 159/400 (39%), Positives = 252/400 (63%), Gaps = 22/400 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+P + L L + + T E +GL ++ +E +D+V+ DL++ ++DG+++ Sbjct: 4 ILIIDDEPSICSSLQFALEDDYETEATTEVD-KGLHIIEQEPIDVVLLDLKIGKVDGLEV 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL------ 121 EI++ +P VI++TA+G+I ++V A + G +S+LTKP+ + L+ ++ AL Sbjct: 63 LQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYKKLN 122 Query: 122 EQSAPATDERWR----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 EQ A + E + E ++ +S M ++ V D SVLI G+SGTGKE+ A+AI Sbjct: 123 EQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARAI 182 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H + R + F +NC A+PE LLESELFG+ +GAFTGA + +EG FQ A GT+FLDEI Sbjct: 183 HFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLDEI 242 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDMP LQ KLLRVLQ+++V LGSN+ ++VR+I+AT++ L + + G FREDLY+RL Sbjct: 243 GDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFRL 302 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V+ + +P L ER ED+P L H L + ++ F +DA + L+ +PGN+R+L Sbjct: 303 HVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIRELS 362 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ 397 N++E SS VI+D + +E E+ LP F+ + + Sbjct: 363 NIVE------SSMVIADG---EYIELED--LPMFIREKGE 391 >UniRef50_Q6MI19 Probable transcriptional regulatory protein zraR n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI19_BDEBA Length = 503 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 169/385 (43%), Positives = 237/385 (61%), Gaps = 13/385 (3%) Query: 9 LLVDDDPGL-LKLLGLRLTSEGYSVVTAESGAEGL-RVLNREK-VDLVISDLRMDEMDGM 65 ++VDDD GL L + ++ + V A G + +V N +K DLV+ D+ M M+G+ Sbjct: 1 MVVDDDQGLRLSVKSALAVTQRFEVDEAFDGVNAMEKVKNGDKKYDLVLLDVDMPRMNGL 60 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-- 123 + +I++ PG+ VII+TAH + A+ A + G +++L KPV D L ID A+ Sbjct: 61 EALRQIKEFDPGIIVIIMTAHATFESAIQAVKDGAYNYLQKPVAGDDLLALIDKAVNAHN 120 Query: 124 -------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 SAP E R+ I+ + M ++ +A+ + VLI G SGTGKE+ A+A Sbjct: 121 LISNIAASAPVMVEEGRK-IIGHTSQMQKVFNIIHRLAKVETPVLIRGASGTGKELVAKA 179 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R + F+AINC A+PE L ESELFGH +G+FTGA + G FQ AEGGTLFLDE Sbjct: 180 IHFNSARKDEKFVAINCSAIPENLFESELFGHEKGSFTGADQRKIGKFQFAEGGTLFLDE 239 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +GDMP +QVK+LRVLQE+ P+GSNR+ NVRII+AT+R L + G FREDL+YR Sbjct: 240 VGDMPQLMQVKILRVLQEKLFTPVGSNREFPTNVRIIAATNRPLEDMIKAGTFREDLFYR 299 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + +PALAER +D+ + N +R+ + H + + DAM L SWPGN+R+L Sbjct: 300 LNVVPIFLPALAERKDDMEHMVNIFIRKFNQAHGKRINGIAPDAMAVLKKHSWPGNIREL 359 Query: 357 VNVIEQCVALTSSPVISDALVEQAL 381 NVIE L S +I+ A + +AL Sbjct: 360 ENVIEHAFVLEMSNIITIASLPEAL 384 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 259/444 (58%), Gaps = 20/444 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD + ++L LT +GY V A GA+ + L D V+ DLRM ++DG Sbjct: 5 ARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVDGF 64 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +K+ P +PV+++TA G + AV A ++G F + TKP D + +++ ALEQ Sbjct: 65 DVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQRR 124 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 T+ R + A+V S M L VA S VL+ G+SG+GKE+ A+ Sbjct: 125 LRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H R + PF+A+NC ALP LLESELFGH +GAFTGA + R GLF A+GGTLFLD Sbjct: 185 ALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM LQ +LLRVL++ +VR +G++ ++VR+++ATH+DL + G FR D++Y Sbjct: 245 EIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFRADVFY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERH-KPFVRAFSTDAMKRLMTASWPGNVR 354 RLNVV+L++P L ER EDIP L H L+QA R+ + V+ FS + + L W GNVR Sbjct: 305 RLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPWAGNVR 364 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENT--------ALPTFVEARNQFELNYLRKL 406 +L N++++ V L S+ V+ + L + + A T V R Q E Y+ Sbjct: 365 ELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLR-QLETEYIAWA 423 Query: 407 LQITKGNVTHAARMAGRNRTEFYK 430 + GN T AA + G + + ++ Sbjct: 424 VARCGGNKTKAAELLGIDVSTIHR 447 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 231/375 (61%), Gaps = 6/375 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + H+L+VDD+ L +LL + L A+S + + L DL ++D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++L I + P MP ++TA+GS+ A A + G + F+ KPV D L Q I+D Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 L + + ++ +P M+ L Q R +A+S + I+G+SG+GKE A+ IH Sbjct: 121 LGINEVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIARLIHTL 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 PR KPF+A+NCGA+P +L+ESE FGH +GAFTGAV +R+GLF+ A+GGTLFLDE+ D+ Sbjct: 181 GPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLLR +QE+ VRP+G ++ +N+RI+ ATH++L M G FR+DL+YRLNV+ Sbjct: 241 PLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFYRLNVI 300 Query: 301 SLKIPALAERTEDIPLLANHL---LRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +P L ER EDIP L H+ L QA E P V S+DA+ + ++PGNVR+L Sbjct: 301 EAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSV---SSDAVNAIGNYAFPGNVRELE 357 Query: 358 NVIEQCVALTSSPVI 372 N +E+ + L I Sbjct: 358 NTLERALTLCDGNTI 372 >UniRef50_A6DJF3 Sigma 54-dependent transcriptional activator containing CheY-like receiver domain n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJF3_9BACT Length = 455 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 168/454 (37%), Positives = 260/454 (57%), Gaps = 19/454 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 + VDDD L + L + + + T E L + +V++D+ M +DG + Sbjct: 4 EIYFVDDDKNFLHAMKLIMRKTAFKIKTFSEPLEMLAEIQAGWQGVVVTDINMPLIDGFE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++K+ G+PVI+LT +G + + + A + G + FL KP+ K+ L + ALE+ Sbjct: 64 VLDRLKKIDDGIPVIVLTGNGEVENVLKALRAGAYDFLEKPLSKEYLLSSAHRALEKRQL 123 Query: 127 ATDER-WREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + R+ I + +S MLRL + + VA SD SV++ G++G GKE+ + Sbjct: 124 TIENKTLRQQIKKSSGVQEFIGQSASMLRLKDTLKTVALSDASVMLIGETGAGKEVISNY 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R +K FIAINCGA+PE L++SELFGH GAFTGA ++R+G F+ GGTLFLDE Sbjct: 184 IHQCSNRKNKKFIAINCGAIPENLMDSELFGHEAGAFTGATTSRKGKFEECNGGTLFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 + MP +QVKLLR L+ER + +GSN+ I ++VRII+A+ L + + +G+FREDLYYR Sbjct: 244 VNSMPMSMQVKLLRFLEERVIEKVGSNKLIPLDVRIIAASQIPLKEVVDKGDFREDLYYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ +KIP+L+ER +DIP+L NH L Q +K + + +L+ SWPGNVR+L Sbjct: 304 LNVIPVKIPSLSERPDDIPILYNHFLFQFCTLYKRELIEVPQTILNKLIAYSWPGNVREL 363 Query: 357 VNVIEQCVA-------LTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQI 409 N+ E+ V L SP ++A N LP + Q+E + + + L+ Sbjct: 364 RNIAERYVITGNLPENLGDSPTSNNAKSISDFTTSN-GLP-IGDRVGQYEKHIIEEELRA 421 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 G+V + G R Y + ++++ DFK Sbjct: 422 QNGSVVNTCASLGTPRKTLYDKMKKYDIKPADFK 455 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 177/451 (39%), Positives = 257/451 (56%), Gaps = 16/451 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K + +LLVDDD LL+ + L L + V TA S E + + D+V+SD+R+D+ D Sbjct: 2 KNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + A +K +P VI+LT +G++ A+ A + G F LTKP+ + L +I+ AL Q Sbjct: 62 GFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALSQ 121 Query: 124 SA---------PATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 D R+ E IV M ++ + +A + +VLI G+SGTGK + Sbjct: 122 RKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLL 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH R + F+ + CGA+PE LLESELFGHA G+FTGA ++ G F A+ GT+F Sbjct: 182 ARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG A LQVKLLRVLQE + P+GS + ++ R+I AT+ L +A+A G FR+DL Sbjct: 242 LDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NV+++++P L ER DIPLLANH L++ E + FS D + + +WPGNV Sbjct: 302 YYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVIS-DALVEQALEGENTAL-----PTFVEARNQFELNYLRKLL 407 R+L NV+E+ V L P + + L G+ ++ EA E + +L Sbjct: 362 RELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDVL 421 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 ++ + N A G NRT YK + R LD Sbjct: 422 EMHQWNRNATADALGINRTTLYKKMKRLGLD 452 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 305 bits (781), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/409 (42%), Positives = 249/409 (60%), Gaps = 19/409 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+VDDDP +L+ + L L + Y VVTA + A+GL + D V+ D+++ + G+ L Sbjct: 7 LLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLAL 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 E +++ +PVI++T HG+ A+ A G F ++TKP + D + ID ALE S A Sbjct: 67 IHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRMA 126 Query: 128 -------TD-----ERWR----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 TD +R + + I+ P M+ + VA D +VLI G++GTGKE Sbjct: 127 RRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGKE 186 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AI+ S R+ + F AINC A+PE LLESELFGH RG+FTGA R G F+ GGT Sbjct: 187 VVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGGT 246 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGDM +Q KLLRVLQE++ +G ++ I +VRI++AT+RDL AMA G FR Sbjct: 247 LFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFRS 306 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAER-HKPFVRAFSTDAMKRLMTASWP 350 DL+YRLN ++++P L ER ED+ +A H A++ K FV + + + M+RLM SWP Sbjct: 307 DLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFV-SIAPETMQRLMAHSWP 365 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFE 399 GNVR+L +++Q + S PVI A + GE+++ VE N +E Sbjct: 366 GNVRELQGIVKQTLLKASGPVIVPAFLPSGF-GESSSPGNNVEISNGWE 413 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 187/455 (41%), Positives = 261/455 (57%), Gaps = 19/455 (4%) Query: 4 KPA-HLLLVDDDPGLLKLLGLRLTSEGY---SVVTAESGAEGLRVLNREKVDLVISDLRM 59 KP+ H+++VDDDPG + G+ S V E+ E + VDL I D+ + Sbjct: 3 KPSLHIVVVDDDPGTCVYIESVFAELGHTCKSFVRPEAAEEYILT---HPVDLAIVDVYL 59 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 G+++ + +P + +I+T S+ A + +G ++ KP+D DAL + Sbjct: 60 GSTTGVEVLRRCRVHRPKLYAVIITGQISLEMAARSIAEGAVDYIQKPIDIDALLNIAER 119 Query: 120 ALEQS-----APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 ALE PA E IV SP ML + + VA S+ +VLI G SGTGKE+ A Sbjct: 120 ALEHKERSGETPAEQEESESKIVGSSPSMLEVYKLIARVAPSNANVLITGASGTGKELVA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R PF +NCG+ E LLESELFGH +GAFTGA S R+GL ++ +GGTLFL Sbjct: 180 RAIHEHSRRAEMPFTPVNCGSFAETLLESELFGHEKGAFTGADSVRKGLIESTQGGTLFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI + QVKLLRVLQE+++R +GSN+ I I+VRI++AT+RD+P + G+FREDLY Sbjct: 240 DEITETSLGFQVKLLRVLQEQQLRRIGSNKIIPIDVRILAATNRDVPSLIREGKFREDLY 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL VV +KIP LAER DIP L H LRQ ER++ V + A++ L SWPGNVR Sbjct: 300 YRLAVVQIKIPMLAERQSDIPSLVTHFLRQFNERNQARV-SIEQSAVELLQKRSWPGNVR 358 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENT---ALPTFVEAR-NQFELNYLRKLLQIT 410 +L N I + S+ I+ A VE+ E + A P R + E + + ++L+ Sbjct: 359 ELENTIYRLAIFASTGRITGADVEREQESQKNGPKAEPVSAPDRLVEMERHQILRILKDV 418 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH--ELDANDFK 443 GN + AAR G R YK R LDA++++ Sbjct: 419 HGNKSEAARRLGIERKTLYKKAVRLGITLDASEYQ 453 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/369 (44%), Positives = 234/369 (63%), Gaps = 11/369 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+VDD + L L +E Y+V A +G E L L +DL+++DL+M+ MDG+ L Sbjct: 13 LLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGLTL 72 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP- 126 +V P + VI++TA GSI AV A + G + ++TKP + L ++ ALE++ Sbjct: 73 LRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERARLQ 132 Query: 127 ------ATDERWRE---AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 TD R A+V RS M L + VAQSD +VLI G+SGTGKE+ A+A+ Sbjct: 133 RDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELVARAL 192 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R ++ F+ +NC A+ E LLESELFGHA+GAFTGAV +R GLF+ A+GGTLF+DE+ Sbjct: 193 HAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTLFIDEV 252 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 + Q KLLR LQE +VR +G + + ++VRI++AT+RD+ + FR+DLYYRL Sbjct: 253 TETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQDLYYRL 312 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV+L++P L ER ED+P LA H L +A R P + S A+ LM+ +PGNVR+L Sbjct: 313 NVVALRVPPLRERLEDVPALAEHFLERANAR-SPNPKRLSAAAVSHLMSYGFPGNVRELE 371 Query: 358 NVIEQCVAL 366 N++EQ AL Sbjct: 372 NLVEQAAAL 380 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 169/381 (44%), Positives = 234/381 (61%), Gaps = 15/381 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +LLV+DD LL L EGY +V E G L+ L R+ DLV+SDLR+ ++ Sbjct: 3 KTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLN 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++LF Q P ++LTA G++ +AVAA ++GV FLTKP+ A + + Sbjct: 63 GLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVL--VRRT 120 Query: 124 SAPATDERWREAIVTRSPLML---------RLLEQARL----VAQSDVSVLINGQSGTGK 170 A + ER + + R L + ++Q R VA + +VLI+G+SGTGK Sbjct: 121 LAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH ASPR PF+A+NC A+PE LLESELFGH +GAFTGA R+G F+ A GG Sbjct: 181 ELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ K LRVLQER +G NR++ +VRII+AT+RDL + + FR Sbjct: 241 TLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL+V + +PAL +R + +P+L +LLR+AA + V+ A+ + WP Sbjct: 301 EDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPV 371 GN+R+L NVIE+ V L V Sbjct: 361 GNIRELQNVIERAVILCKGQV 381 >UniRef50_Q7UTY7 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Planctomycetaceae RepID=Q7UTY7_RHOBA Length = 488 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 178/468 (38%), Positives = 263/468 (56%), Gaps = 36/468 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+ DD+P + L EGY + E + + VL K DL++SDL M +L Sbjct: 24 ILIADDEPLFRETTAEFLREEGYECLCVEDANDAISVLEEHKFDLILSDLNMPGNLKFEL 83 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID--------- 118 E + +P+I++T S+P A+ + + GV +L KPV + L A+ Sbjct: 84 LKEGRTKHSDVPMIVVTGAPSLPSAIESVRLGVTDYLLKPVKLEELLTAVQRSLSQAGNR 143 Query: 119 DALEQSAPAT--DER-------WRE--AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 A+EQS+ T DER W + I+ SP ML +LE VA SD +VLI G+SG Sbjct: 144 KAIEQSSAPTPGDERASADTPAWSKDLGIIGESPKMLEVLEIVERVAMSDTNVLITGESG 203 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH S R I+C ++PE L ES LFGH +G+FTGAV ++ GL +A Sbjct: 204 TGKEVIAKAIHCRSHRRDNAMQVIDCTSIPESLFESALFGHIKGSFTGAVKDQAGLLRAC 263 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGT F+DE+G++P Q KLLRV+QE+ P+G ++ I ++ R + AT+RDL + Sbjct: 264 DGGTAFIDELGELPLSSQAKLLRVIQEQTFTPVGDSQSIRVDTRFVCATNRDLQNEVDAE 323 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF---VRAFSTDAMKRL 344 FR DLYYRL VV +++P L +R +D+ LLAN L ++H+P +F+ + ++ Sbjct: 324 RFRHDLYYRLAVVHIELPPLRDRGDDVILLANAFL----QKHQPAGVNPSSFAYETLECF 379 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVIS---------DALVEQALEGENTALPTFVEAR 395 + WPGN+R+L NV+E+ +AL PVI D++ E E + A + EA Sbjct: 380 RSYRWPGNIRELRNVVERSLALAKGPVIEASDLPKPLRDSINETPFETLDLAEVSRDEAL 439 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + + YL +LL G + AAR AG +R KLL RH +DANDF+ Sbjct: 440 DTADRAYLVQLLGKHHGVIASAARQAGLSRQGMNKLLKRHHIDANDFR 487 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 304 bits (778), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 172/437 (39%), Positives = 267/437 (61%), Gaps = 23/437 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 KP LL+V+DD L L L +GY+ V SG + L L+RE D+VI+D+++ M Sbjct: 3 KP-KLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMG 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L EI+K + ++++TA+ SI AV A + G +L KPVD + L ++ E+ Sbjct: 62 GLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLREK 121 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 R + +V SP M R+ + VA S SVLI G++GTGKE+ Sbjct: 122 QQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A AIH S R KPF+A++C AL E +LESELFGH +GAFTGA+ +R+G F+ A+GGTLF Sbjct: 182 AHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ +M +QVKLLRVL++ + +G + I ++VR I+AT+R+L + ++ G FREDL Sbjct: 242 LDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+++++P L ER +DIP+L+N+ + A+++K ++ F +A+K L++ W GN+ Sbjct: 302 FYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGNI 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNYLRK 405 R+L N IE+ + L S IS + +++ +N +P T EA + +++ Sbjct: 362 RELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEI----IQR 417 Query: 406 LLQITKGNVTHAARMAG 422 LQIT G+ AA++ G Sbjct: 418 TLQITNGSKQSAAKILG 434 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 245/381 (64%), Gaps = 12/381 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+++D+ + + L L + GY V TAE+G + L +L++ +++++DL + + G+ Sbjct: 16 SQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGI 75 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++ P VI++T GS AV A ++G F ++TKP+ + L I A+E+S Sbjct: 76 EILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSR 135 Query: 126 PATDE---------RWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + ++R + I+ S M + + V +D ++LI G+SGTGKE+ A+ Sbjct: 136 LVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAK 195 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH R KPF+AINCGA+P +LLESELFGH RGAFTGAV+++ G FQ A GT+FLD Sbjct: 196 AIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLD 255 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG MP LQ+KLLRVLQE++V +GS++ I ++VR+ISAT+ +L + + +G FR DLYY Sbjct: 256 EIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYY 315 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 RLNV+ + +P L ER EDI LLA + L++ E ++P + + + AM L WPGNVR Sbjct: 316 RLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLI-SITPGAMNCLENYHWPGNVR 374 Query: 355 QLVNVIEQCVALTSSPVISDA 375 +L NVIE+ V LT S I + Sbjct: 375 ELENVIERTVTLTDSIAIGKS 395 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 303 bits (777), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 167/437 (38%), Positives = 253/437 (57%), Gaps = 23/437 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 ++L+VDD+ + +L LT EGY V TA +GA+ L ++ ++ D ++ D++M MDG+ Sbjct: 10 NVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGLA 69 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE---- 122 A + P VI+++A+G+I AV A + G + +++KP D + A+ A E Sbjct: 70 FLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERERL 129 Query: 123 ---------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 Q A I+ +S M + + VA D +VL+ G+SGTGKE+ Sbjct: 130 KRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELV 189 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+++H SPR I +NCG +PE LLESELFGH +GAFTGA N+ GL + A GTLF Sbjct: 190 ARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTLF 249 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++PA LQVKLLR+LQ+R++RP+G++ I++RI++AT R+L +A G FREDL Sbjct: 250 LDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFREDL 309 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+ + +P L +R EDIPLL +++ ++ + + A+ RL+ +WPGNV Sbjct: 310 FYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWPGNV 369 Query: 354 RQLVNVIEQCVALTSSPVIS-----DALVEQALEGENTALPTF-----VEARNQFELNYL 403 R+L N+IE+ V L I+ + G AL F A+ FE + Sbjct: 370 RELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIFEKRLI 429 Query: 404 RKLLQITKGNVTHAARM 420 K L T GN T +++ Sbjct: 430 EKALAKTGGNRTRTSKL 446 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 279/449 (62%), Gaps = 21/449 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+DD + + L L+ +GY+V + +SG + L + + + DLV+SDL++ MDGM++ Sbjct: 6 ILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDGMEV 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 I++ + +I+TA+G++ AV+A +QG ++ KP D + L ++ LE+ Sbjct: 66 LKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKRGLF 125 Query: 128 TD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D + E IV S M+ + + V +S +VLI G++GTGKE+ A+AI Sbjct: 126 LDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVARAI 185 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R KP++ +NC AL E L+ SELFGH +GAFTGAV+++ GLF+AA+GGTLFLDEI Sbjct: 186 HFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTLFLDEI 245 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GD+ LQ LR L++ +++P+GS + ++VRII+AT+++L + +G FR+DLYYRL Sbjct: 246 GDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLYYRL 305 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV++ +P L +R EDI LLA H L + A ++ +R + A++ L SWPGNVR+L Sbjct: 306 NVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVRELE 365 Query: 358 NVIEQCVALT-SSPVISDALVEQALEGENTALP-------TFVEARNQFELNYLRKLLQI 409 N+IE+ + + D+L + +E P T +EA ++ ++ ++L++ Sbjct: 366 NIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVSR---RHIVRILEM 422 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 T N T A+++ G +R+ +++++R +L+ Sbjct: 423 TNHNKTQASKLLGIDRSTLWRIMNRLKLN 451 >UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SKC8_THIDA Length = 454 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 178/445 (40%), Positives = 259/445 (58%), Gaps = 17/445 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLVDD L + L L L G+ AESG E L L E+ DLVI+DLRM+ M G+ L Sbjct: 3 ILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGVDL 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP- 126 EI+++ P +PVI++TA+GSI AV A + G F +LTKP + + + I + QSAP Sbjct: 63 LREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILEKIRAS--QSAPP 120 Query: 127 -----ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 A R E IV +P M L +A +A++D+SVLI G++GTGK A+ IH S Sbjct: 121 GFALAAEASRDAEDIVADTPQMRATLIKAERIARTDISVLITGETGTGKTRVARFIHENS 180 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R PF++INC +LPE LLESELFGH +GAFTGA +R GLF+ A+GGTLFLDE+ + Sbjct: 181 ARREAPFVSINCASLPENLLESELFGHVKGAFTGATESRAGLFEEADGGTLFLDEVDTLS 240 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 +Q KLL VLQE+ +R +GSN+ +++RI+SA+++DL + +G FR DLY+RLN + Sbjct: 241 PAMQAKLLSVLQEKVIRRVGSNKGKKVDIRIMSASNQDLALLIDKGHFRSDLYFRLNGIR 300 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 L +P L ER +D+ L L ++ S A ++ ++PGN+RQL + +E Sbjct: 301 LHLPPLRERGQDLHNLLQRFLAVYGRKYGRGRLRLSPRAEAYVLGYAYPGNIRQLESFVE 360 Query: 362 QCVALT--SSPVISDALVEQALEGENTALPTFVEAR----NQFELNYLRKLLQIT---KG 412 Q + + DAL E L+ A+P A + R++++ T Sbjct: 361 QMAVFADDAGYIDVDALPEDLLQQAPAAMPRHEPAELGEGGGSIADSQRRMIEATLQRAS 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHEL 437 N+ AAR+ G RT ++ + + L Sbjct: 421 NIGEAARVLGIGRTTLWRKMREYNL 445 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 303 bits (777), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 174/441 (39%), Positives = 263/441 (59%), Gaps = 18/441 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+ DD+ L +L L GY V T ++G E L + D+ I D+RM E+DG+Q Sbjct: 17 VLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQA 76 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL------ 121 F EI K++P +P+I++TA GS AV A + G + ++ KP + D + + A+ Sbjct: 77 FYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQLT 136 Query: 122 EQSAPATDERWREAIVTRSPLML-----RLLEQARL---VAQSDVSVLINGQSGTGKEIF 173 ++ T E + +P + ++ E ++ VA S +VL+ G+SGTGK + Sbjct: 137 KEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGMV 196 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH AS R KPFI +NCG++PE LLESE+FGH +GAFT A + G F+ AEGGTLF Sbjct: 197 AKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTLF 256 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEI +M LQVKLLRVLQE++ +G + NVRII+AT+RDL K ++ FR+DL Sbjct: 257 LDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKDL 316 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVVS+ +P L ER EDI LLA++ L++ + F+ + + SWPGN+ Sbjct: 317 YYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNYSWPGNI 376 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENT-ALPTFVEARNQFELNYLRK-LLQITK 411 R+L N +E + ++++ VI + +++ E+ A T + + F+ LR+ LL++ K Sbjct: 377 RELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKP--LREVLLEVEK 434 Query: 412 GNVTHAARMAGRNRTEFYKLL 432 +++ A G NRT+ KLL Sbjct: 435 RHISEAIERTGGNRTQAAKLL 455 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 303 bits (776), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 177/454 (38%), Positives = 267/454 (58%), Gaps = 29/454 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + L LT G+ A G E L L E DLV++DLRM MDG+ Sbjct: 4 ARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGMDGL 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L A +++ P + VI++T H ++ AVAA G F+++ KPV + + ALE++A Sbjct: 64 ELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALEKNA 123 Query: 126 -------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 PA+ ++ +S M L E VA+ + +VL+ G++GTGKE+ Sbjct: 124 MRRELASLRRRADPASG---LSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH+ S R F+A+NCGA E+L+ +ELFGH R AFTGA + R+GL +AA GGTL Sbjct: 181 VARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG++P +QVKLLRVLQER +G + ++ R++SAT++DL K G FR+D Sbjct: 241 FLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQD 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRL+V++L +P L+ER EDIPLLA H L + A VR S + + L+ +PGN Sbjct: 301 LFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNVR-LSPEVLDSLLLYEYPGN 359 Query: 353 VRQLVNVIEQCVALTSSPVISDA-----LVEQAL---EGENTALPTFVEARNQFELNYLR 404 VR+L N++++ +A+ VI L +Q + G + PT + E Y+R Sbjct: 360 VRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTL----EEHEKAYIR 415 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +L+ +GN + AAR+ G +R ++ L R+ L+ Sbjct: 416 DVLEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 303 bits (776), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 233/381 (61%), Gaps = 9/381 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K A +L+VDDD + L L S GY + TA +G E L+ + + VI+D+RM Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP--------VDKDA 112 M GM++ I+K+ P PVI++TA+G++ AV A ++G F+ KP V K+ Sbjct: 61 GMGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNV 120 Query: 113 LYQAIDDALEQSAPATDERWRE-AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + +S P + + I+T +L +LE + VAQS SVLI G+SGTGKE Sbjct: 121 MATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+ ++ S R PF+AINC A+P+ LLESE+FG +GAFTGA+ + G F+ A GGT Sbjct: 181 LFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDE+ +M LQ KLLRV+QE+++ LG + ++VRII+ T+ D+ K + FRE Sbjct: 241 LLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV+ LKIP L ER D+ LL ++ L++ + ++ + F+ +KRL WPG Sbjct: 301 DLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVI 372 NVR+L NVIE+ V + V+ Sbjct: 361 NVRELENVIERAVLVCGGNVV 381 >UniRef50_Q5P0J0 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0J0_AZOSE Length = 464 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 256/452 (56%), Gaps = 30/452 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L+VDD+ +LL RL GY + A G L +DL + D++M +DG++ Sbjct: 4 HILIVDDEALYRQLLTSRLGRAGYRLSEAADGEAALECAQHGGIDLALVDIKMPGIDGIE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++++ P + V+ILT HG++ A++A + G F +L+KP L ++ ALE+ A Sbjct: 64 VLKRLKELDPLIEVVILTGHGNVDTAISAMKLGAFDYLSKPYKLTELDIVVERALEKRAM 123 Query: 127 A---------------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 A TD+ A++ S R+L R A D+ VLI G+SG GKE Sbjct: 124 AQRCAALSAEVAALRSTDD---GAVIGASAAWKRMLALVRRAAPLDLPVLITGESGAGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A A+H S R + ++ +NCG L + L+ESELFGH RGAF+GA +++EGLFQ A GT Sbjct: 181 VVASALHRWSNRAKESYVPLNCGLLDDDLVESELFGHKRGAFSGATADKEGLFQVASAGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIG++P Q KLLRVL + R LG+ + R+++ATHRDL K +A G+FR Sbjct: 241 LFLDEIGELPLGCQAKLLRVLDSGEFRQLGATALRHTHARVVAATHRDLDKLVAEGKFRH 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL YRLNVV + +P L ERTEDIPLL HLLR+ + P V + A+ L+ WPG Sbjct: 301 DLLYRLNVVHIHVPPLRERTEDIPLLVEHLLRRRTPQSGP-VPQLAPTALAHLVAYRWPG 359 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQAL-----------EGENTALPTFVEARNQFEL 400 NVR+L NV+E+ +A I +A V L G A + + F+ Sbjct: 360 NVRELRNVVERLIAFREGDTIGEAEVCAVLGIAPAPAPGCARGGAAAASDGIVPLDDFQR 419 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLL 432 +Y+ ++L GNV+ AA+ G +R+ Y+ L Sbjct: 420 DYVLRVLDKLDGNVSAAAQALGVSRSTVYRFL 451 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/457 (36%), Positives = 259/457 (56%), Gaps = 20/457 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L+VDD+ + + L + L +EGY+V+ AES +GL VL E VDL + D+R+ Sbjct: 23 MDPTKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLP 82 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ L + +++ +PVI+++ H D V A ++G F +KPVD+D + ++ +A Sbjct: 83 GMDGLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNA 142 Query: 121 LE--------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 L Q+ A + R+ + ++ SP M +L E VA + VL+ G+SGTGKE+ Sbjct: 143 LSRRDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKEL 202 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A +H S R PF+ +NC A+P +L+ESELFGH +G+F+GA + R G F+ A GGTL Sbjct: 203 VAAEVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTL 262 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM Q K+LR LQ +V +GS + ++VRII+AT++DL + + G FRED Sbjct: 263 FLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFRED 322 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L++RLNVV L +P L +R +D+P+LA + A + + RL WPGN Sbjct: 323 LFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGN 382 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQ------------ALEGENTALPTFVEARNQFEL 400 VR+L NV E+ V ++ + + + E + + E R+ E Sbjct: 383 VRELRNVCERMVIMSGERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDLVER 442 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 +Y+ L+ N+T AA+ G RT +K + +H L Sbjct: 443 DYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGL 479 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 167/434 (38%), Positives = 252/434 (58%), Gaps = 16/434 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 P +L+VDD+ + + L EGY V A +GAE L + +V++D+RM +MDG Sbjct: 3 PQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-- 122 + L ++ +++TA S+ AV A + G +FL KP+D D + + LE Sbjct: 63 LTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKR 122 Query: 123 ---QSAPATDERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 Q A A ++ R I+ SP + + + R A + +VLI G+SGTGKE+ Sbjct: 123 SLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELI 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 AQA+H SPR KPFI ++C AL E LLESELFGH +G+FTGA++ +EG F+ A+GGTLF Sbjct: 183 AQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +QVKLLRVLQ+R+ +G + + ++VRI++ATHRDL + G FREDL Sbjct: 243 LDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVVS+ +P L +R D+P L NH L + ++ + VR + ++ L++ WPGN+ Sbjct: 303 YYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPGNI 362 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG---ENTALPTFVEARN--QFELNYLRKLLQ 408 R+L N IE+ V L +S + L G T+ + E + + L+ Sbjct: 363 RELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLAAIEREAILRTLE 422 Query: 409 ITKGNVTHAARMAG 422 + +G+ + AA + G Sbjct: 423 MVQGSTSRAAEVLG 436 >UniRef50_Q0EZM6 Helix-turn-helix, Fis-type n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZM6_9PROT Length = 461 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 181/455 (39%), Positives = 274/455 (60%), Gaps = 34/455 (7%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD-G 64 A LLLV+D+ ++L L L +G+ V T S E + D+V++DLRMD D G Sbjct: 2 ADLLLVEDEANARRILALGLELQGHRVTTCASPEEAEACMKSATFDVVLTDLRMDGRDAG 61 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL--- 121 +++ + +QP V++LTA+ S AV A +QG F +LTKPV +AL A++ AL Sbjct: 62 LEVIRMSRILQPDARVLLLTAYASAETAVLAMKQGAFDYLTKPVSGEALAAAVERALFDA 121 Query: 122 -----------EQSAPATDERWREAI-VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 Q+ P D + I + S +M R+ ++ + QS +VL++G+SGTG Sbjct: 122 VDDRDDTALVATQAVPVADGVDDDGILIGESEVMQRVRQRLQRAGQSQFTVLVSGESGTG 181 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+ +H S R++ PF ++CGA+PE L ESELFG+ +GAFTGA ++R GL + G Sbjct: 182 KELAARYVHACSTRSTGPFTPVHCGAIPEGLFESELFGYRKGAFTGAEADRVGLVEGTNG 241 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIGDMP QVKLLRVLQER++R +G +R+ D+++R+I+AT+RDL + + +G F Sbjct: 242 GTLFLDEIGDMPLSAQVKLLRVLQERRIRRVGDDRERDVDIRVIAATNRDLEEDVRQGHF 301 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL++RLNVV + +PAL +R EDIP LA ++R+ +E S +KRLMT + Sbjct: 302 REDLFFRLNVVPVHMPALRQRREDIPALARAIVRRWSEGRG----RLSDSCLKRLMTLPF 357 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQI 409 GNVR+L N++++ +AL+ + L+++ G ++A + +LN L L+I Sbjct: 358 MGNVRELENLLQRMLALSDDYELDVPLLDEMYSGLQDNPQISLQAMHDADLN-LDTWLEI 416 Query: 410 ------------TKGNVTHAARMAGRN-RTEFYKL 431 T GN+T AA G + R+ Y+L Sbjct: 417 NERQLIDQALLKTGGNITRAAEELGISFRSLRYRL 451 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 172/450 (38%), Positives = 249/450 (55%), Gaps = 24/450 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L VDD+P ++ R+ ++ + V TA SGAE L L D+VI+DL M MDG++ Sbjct: 7 ILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGIE 66 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +EI+ + P + ++ILT+ S V A + G + +L KP D + + ++I L A Sbjct: 67 LLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAA 126 Query: 127 ----------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ++ E ++ + M + E VAQ+ +VLI G+SGTGKE+ A A Sbjct: 127 VQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASA 186 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KPFI INC AL E L+ SELFGH +GAFTGAV+ ++GLF+ A GGTLFLDE Sbjct: 187 IHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDE 246 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+ QV LLR+L+ + +G I +VR+I AT+RDL A +FREDLYYR Sbjct: 247 IGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYR 306 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVVSL+ P L +R DIPLL + L + + + + DAM L WPGN R+L Sbjct: 307 LNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCREL 366 Query: 357 VNVIEQCVALTSSPVI-SDALVEQALEGE--------NTALPTFVEARNQFELNYLRKLL 407 N+IE V + + D+L Q + N A T +A + ++K+L Sbjct: 367 ANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESAL----IKKVL 422 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + N+ AA + R Y + ++ L Sbjct: 423 EESNWNLKKAAELLDIARGTLYGKMEKYHL 452 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 186/480 (38%), Positives = 265/480 (55%), Gaps = 47/480 (9%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 PA +L+VDD+ L L L +G+ TA +GAE L +L DLV++DL M MDG Sbjct: 36 PARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDG 95 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L ++ P V+++T + ++ AV A G + +L KP D + + ALE+ Sbjct: 96 LDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKR 155 Query: 125 APATD-ERWREAIVTRS---------PLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + R RE + RS P M L VA SDV+VLI G++GTGKE+ A Sbjct: 156 RLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAA 215 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H S R+ F+AINCGA E+LLESELFGH +GAF+GAV R+GLF+AAEGGTLFL Sbjct: 216 RMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFL 275 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+G+M P+QVKLLR +QER +R +G DI ++VR+++AT++DL A G FR DLY Sbjct: 276 DEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLY 335 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV L++P LAER ED+PLLA + +AA + + + L +PGNVR Sbjct: 336 YRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVR 395 Query: 355 QLVNVIEQCVALTSSPVISDA-----------------------------LVEQALE--- 382 +L N+IE+ L + VI+ A LV +A E Sbjct: 396 ELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAAR 455 Query: 383 -----GENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 GE ++ E ++ +L++ GN THAA++ +R ++ L R+ L Sbjct: 456 MPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKRYGL 515 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 167/456 (36%), Positives = 276/456 (60%), Gaps = 25/456 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 +SH A++L+V+D+ L +T G+ VV SG E L+ + +++ +LV++DL + Sbjct: 2 ISH--ANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++L I+++QP VI++T H S+ AV A Q+G S++ KP++ D L + +A Sbjct: 60 GMNGIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNA 119 Query: 121 LEQSAPATDE-RWREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ A + + R R+ + V +S +++L + +A D +VLI G++GTGK Sbjct: 120 LERQALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH SPR+ + F+AINCG +L++ ELFGH R AFTGA ++G+ + A GG Sbjct: 180 ELIARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+F DE+ ++P +QVKLLRVLQER +G ++I +++R++SAT+ DL + + G FR Sbjct: 240 TVFFDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFST---DAMKRLMTA 347 +DL+YRLNVV+L P L + EDIP+L H L E+H+ ++ T + + LM Sbjct: 300 QDLFYRLNVVTLSAPPLRDHREDIPVLIGHFL----EKHRTETQSIDTISQETLDILMNY 355 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEG--ENTALPTFVEARNQFELNYLRK 405 S+PGNVR+L N+ ++ +AL V S L+ + + N L T E E +++ K Sbjct: 356 SFPGNVRELENISQRALALARGTVFSPDLLPEEIRNIDRNKPLRTLEEV----ERDHIEK 411 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 ++ T GN T AA++ G +R ++ + R L+ ++ Sbjct: 412 VMLATNGNKTQAAKILGIDRVSLWRKMKRLGLEKDN 447 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 166/379 (43%), Positives = 243/379 (64%), Gaps = 12/379 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +++L+ DD+ + ++L + L EG+ V T SG R L+ D+V++D+RM + +G+ Sbjct: 2 SNILVCDDERSICEMLEIALRKEGHKVETVTSGEAAKRKLDSALFDVVVTDIRMPQTNGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVF-SFLTK-PVDKDALYQAIDDALEQ 123 ++ ++ P V+++TA I AVAA + G ++ K P D + AI +A+E+ Sbjct: 62 EVLRHAHQISPDTAVVLITAVDDIEAAVAAVKAGGAADYIRKSPSLIDDIRVAIGNAVER 121 Query: 124 S-------APATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A D R + IV SP M +L R+VA + +VLI+G+SGTGKE+ Sbjct: 122 GSLKRQNLAYKRDAAGRNSLDNIVGTSPAMGKLKNTIRMVASTGSTVLIHGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H SPR +PF +INCGA PE LLESELFG+ +GAFTGAV N+ GLF+ + GGT+F Sbjct: 182 ARAVHTCSPRAGEPFTSINCGAFPETLLESELFGYVKGAFTGAVQNKRGLFEVSTGGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEI +M +QVKLLRVLQER +RP+G +I ++VR+I+AT+++L +A G FREDL Sbjct: 242 LDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVIAATNKNLDAQVADGVFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+V+ +++P L ER +DI LLANH L++ A +RA +++ L WPGNV Sbjct: 302 YYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGKSIRAIRVESLGDLREYDWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVI 372 RQL N IE+ VAL S V+ Sbjct: 362 RQLENTIERAVALEMSDVL 380 >UniRef50_Q1CVM8 Sigma-54 dependent DNA-binding response regulator Nla24 n=3 Tax=Myxococcus RepID=Q1CVM8_MYXXD Length = 451 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 178/455 (39%), Positives = 263/455 (57%), Gaps = 23/455 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL++DDD G++ L L + GY V S E L + RE DLVI+D+ M Sbjct: 1 MSTPRKRLLILDDDAGVVDFLCESLDARGYEAVGRTSPEEALALFERESFDLVITDVEMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G ++ + +PG V+++TA GS+ AVAA + G F+TKP + DAL ++ A Sbjct: 61 RMRGTEVLEALLTRKPGQLVVLITAFGSVELAVAAVKAGACDFVTKPFNIDALVLTLERA 120 Query: 121 L-EQSAPATDERWREAI--------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E+ R R A+ V RS M + LE +R A+SD +VL+ G++GTGK Sbjct: 121 FRERQLRREIVRLRAAVPGDTPGGLVARSSAMQKALEVSRRAARSDATVLLTGETGTGKS 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 A+ IH +S R ++PF+ +NC ALP L ESELFG RGA+T A +R G+F + GGT Sbjct: 181 ALARFIHESSGRRTQPFLQLNCAALPSGLAESELFGARRGAYTDAREDRAGVFVSVGGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G++ +Q KLL+ L+ +VRPLGS+ + + R+++AT++ L + G FR Sbjct: 241 LFLDEVGELSLEVQAKLLQALETGRVRPLGSSTETPVRARVLAATNQPLEVLLREGRFRA 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV+ +++P L ER EDI L + L + E+ + V S A+KRL+ +WPG Sbjct: 301 DLYYRLNVIRIEVPPLRERREDILPLVDFFLGRLGEQQQREVLGVSASALKRLLAHAWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALE----GEN--TALPTFVEARN----QFELN 401 NVR+L N++E+ VAL D LV + + GE+ T+L + + + E Sbjct: 361 NVRELANLLERAVALAD----HDTLVPEDFDLPGGGESGLTSLLSHASGEDAPLEEVERA 416 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 Y+R++++ GN AAR+ G NR Y+ L E Sbjct: 417 YVRRVVEAQGGNKAAAARILGINRRTLYRKLDLDE 451 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/442 (38%), Positives = 252/442 (57%), Gaps = 23/442 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+ DDD + L+ +GY V A G + L+ + +V +VI+D+ M ++G++ Sbjct: 6 ILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVNGLEF 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDAL---------YQAID 118 +++ ++P + I +A + + G F +L KP + + L +QA+ Sbjct: 66 IKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQ 125 Query: 119 DALEQSAPATDER-WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 +S P R I+ S ML L E VA SD +VLI G+SGTGKE+ A+AI Sbjct: 126 SKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARAI 185 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S R+ K F+A+NC A+P++LLESELFGH +G+FTGAV++R G F+ A+ GTLFLDEI Sbjct: 186 HDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEI 245 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM A LQVKLLRVLQ R++ P+GS R ++VRII+AT+++L +A EFREDLYYRL Sbjct: 246 GDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRL 305 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V+ + +P L ER D+PLL N L + + V+ F M+ L WPGNVR+L Sbjct: 306 SVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNVRELE 365 Query: 358 NVIEQCVALTSSPVIS---------DALVEQALEGENTALP----TFVEARNQFELNYLR 404 N++E+ V + ++ VIS L GE LP A +FE + Sbjct: 366 NLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLIL 425 Query: 405 KLLQITKGNVTHAARMAGRNRT 426 + L+ + GN AA + RT Sbjct: 426 QALEKSGGNKKEAAELLNLKRT 447 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 180/454 (39%), Positives = 256/454 (56%), Gaps = 23/454 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLR--LTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 P +LLV+D+ L LG++ L+ GY V A++ L+R DLVI+DLR+ M Sbjct: 3 PHSILLVEDE--LSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGM 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID---- 118 GM+L I+++ PG VI++TA + AV A + G F FL KP D L A++ Sbjct: 61 SGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFR 120 Query: 119 --DALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 D ++ ER + SP ML++ ++ R +A + V VL+ G SG+GKE+ A A Sbjct: 121 FLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R +PFI INC ALPEQLLESELFGH +GAFTGA R G F+AA+GGTLF DE Sbjct: 181 LHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G+MP PLQ KLLRVL++++V P+G N +NVR + AT R+L +A+A G FREDLYYR Sbjct: 241 VGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +NVV + +P L ER D+ LL LR+ H+ S A L+ +PGNVR+L Sbjct: 301 INVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVREL 359 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP------------TFVEARNQFELNYLR 404 N +E V L + I + + + ++P + E +FE + Sbjct: 360 RNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIM 419 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + L+ T G AA + G +R + + L +D Sbjct: 420 EALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 183/472 (38%), Positives = 271/472 (57%), Gaps = 36/472 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + A +L+VDDD L + L +EGY+V TA SG G+ + DLV+ D+RM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++ +A +++ +P +PVII+TA G+ A+ AT+ G + ++ KP D + + I+ A Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LE-----QSAPATDERWR-----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + +S A E +AI+ RS M L + A +D +VLI G+SGTGK Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A++ S R KPF+ INC A+PE LLESELFG+ +GAFTGA + G + A G Sbjct: 181 ELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGDMP +Q K+LR+LQE+ V LG + I ++VRII+AT+RDL A+ G+FR Sbjct: 241 TVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTASW 349 EDLYYRL VV++ +P L ER DIPLL + L R + E +P S +AM L T W Sbjct: 301 EDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDP-GVSDEAMALLTTQPW 359 Query: 350 PGNVRQLVNVIEQCVALT-SSPVISDALVEQALE-----GENTALPT------------- 390 PGNVR+L N +++ + +P+ D + + + E G A P Sbjct: 360 PGNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELAS 419 Query: 391 -----FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 F + ++F L +R+ L+ T GN + AAR+ G +R + ++ L Sbjct: 420 GRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGL 471 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 171/451 (37%), Positives = 251/451 (55%), Gaps = 19/451 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+VDD+ + L EGY V ES E L + + DL + D++M Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMR 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG++L ++ ++ PG+ VI++T + S+ AVA + G + ++TKP+D + + A Sbjct: 61 GTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKA 120 Query: 121 L-----EQSAPATDERWREA----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L EQ E+ E +V RS M ++ + VA +D +VLI G+SGTGKE Sbjct: 121 LAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S R P + ++CGAL E LLESELFGH +GAFTGA ++G F+ AEGGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGD+ Q LLRVLQER++ +G N+ I ++ RI++AT++DL K + G FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNV +++P L +R EDIPLL NH ++ AE+ V ++ AM L WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSP-------VISDALVEQALEGENTALPTFVEARNQFELNYLR 404 NVR+L N +E+ + + P V+ T P +E E ++ Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLE---DIEKEHIL 417 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 +L T N T AA M +R + + R+ Sbjct: 418 HVLDETNWNQTRAAEMLDIDRVTLHHKIKRY 448 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 164/445 (36%), Positives = 265/445 (59%), Gaps = 15/445 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE-KVDLVISDLRMDEMDGMQ 66 +L+VDDDP L ++ L S+GY+ +GA+ + ++++ + +V++D M EMDG+Q Sbjct: 4 ILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDGIQ 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-QSA 125 L ++I+++ + VI++T++G++ AV A + G ++TKP +D L I+ L+ Q Sbjct: 64 LLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQMQRL 123 Query: 126 PATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 +R R I+ SP + ++ + V+ ++ ++LI G++GTGKE+ A+A Sbjct: 124 EGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S RN+ F+ ++C +L E LLESELFGH +GAFTGA +R G F+ A+ GT+FLDE Sbjct: 184 IHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ +Q KLLRVLQ+ + +GS+ I ++VRII+AT+ DL + +G FR DL+YR Sbjct: 244 IGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + +P L ERTEDIPLLA H L ++++ V FS D + L + +WPGN+R+L Sbjct: 304 LNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIREL 363 Query: 357 VNVIEQCVALTSSPVIS--DALVEQALEGENTALPT--FVEARNQFELNYLRKLLQITKG 412 NVIE+ V L I+ D + Q G L E Q E + L+ Sbjct: 364 ENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEANDA 423 Query: 413 NVTHAARMAGRNRTEFYKLLSRHEL 437 + A++ +R Y L+++++ Sbjct: 424 DKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 173/454 (38%), Positives = 258/454 (56%), Gaps = 25/454 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +L+V+DD L +LL + L GY V A G +GLR E ++V+ D++M +D Sbjct: 8 KGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVD 67 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++ +I+ T HGSI AV + G + +LTKPV D L ID A E+ Sbjct: 68 GIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDKAYEK 127 Query: 124 S---------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + +V RSP ++++L+ R ++ VLI G+SGTGKE+ + Sbjct: 128 NRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGKELIS 187 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H+ASPR KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ GTLF+ Sbjct: 188 RAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTGTLFM 247 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+ + P +QVKLLRVL+ R +G N DI ++VR + A++++L + + RGEFREDLY Sbjct: 248 DEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFREDLY 307 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+N++ + +P L ER EDI LA ++ AA R + +AM L SWPGNVR Sbjct: 308 HRINLLPINLPPLRERPEDILPLAYFFMKSAAGREDENWE-ITEEAMAALTAYSWPGNVR 366 Query: 355 QLVNVIEQ-CVALTSSPVISDAL---------VEQALEGENTALPTFVEARNQFELNYLR 404 +L N I + C+ T + S+ L Q T LP +V R+ E Sbjct: 367 ELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWVVERDHIE----- 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 ++L+ +GN + AA++ +R Y L R+ LD Sbjct: 422 RVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 179/441 (40%), Positives = 250/441 (56%), Gaps = 22/441 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ +L L G+ V A S A+ L ++R D+V+SD+RM G+ L Sbjct: 5 ILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAESGLDL 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++ +P +P +++TA+ + +AV A + G +L KPVD D L A+ D L A A Sbjct: 65 LRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTLGVGAGA 124 Query: 128 TDE---RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 E IV S M +L A VA SD ++L+ G+SG+GKEI AQ IH S R+ Sbjct: 125 GGEIPAASLTGIVAESLAMRSVLRDAYRVAPSDATILLTGESGSGKEIVAQFIHRHSARS 184 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 +KP + +NC A+ LL SELFGH +GAFTGAV+ R+G F+ A GTLFLDEIGDMP L Sbjct: 185 AKPLVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFLDEIGDMPLEL 244 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q LLR + ++ P+GS+++ I+ R+I+AT+ DL +A G FR+DLYYRLNV+++ I Sbjct: 245 QPSLLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLYYRLNVITIDI 304 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER EDIP LA L + K R S AM+ L++ WPGNVR+L N + Sbjct: 305 PPLRERPEDIPPLARLFL----NKDKTEARRLSRAAMQTLISHPWPGNVRELANAMAHVR 360 Query: 365 ALTSSPVI-------------SDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 L+ + VI A E + E A P + Q E+ + L+ TK Sbjct: 361 LLSQTDVILPEHLPPAVRKSAGKAAPESRIPVEQDA-PAQTKTLEQHEIEAVTAALKHTK 419 Query: 412 GNVTHAARMAGRNRTEF-YKL 431 GN THAA++ G R YKL Sbjct: 420 GNRTHAAQLLGITRRGLIYKL 440 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 301 bits (770), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 259/451 (57%), Gaps = 19/451 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ H+L+ DDDP + +L L EGY V A G + + + + DL++ D+RM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG+++ +++ +P+I++TA G+ + A Q G + ++TKP D D + + I+ Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 121 LEQSAPATDERWR--EA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 EQ +T R R EA I+ SP+M + + LVA SD +VLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S + P + +NC ALPE LLESELFGH +G+FTGA R+G F+ A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG+M Q KLLRVLQER+ +G + I ++ R+I+AT++ L + +A G+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + +P L ER EDIPLL ++ L++ + S +A+K LM WP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA--LVEQALEGENTALPTFV-------EARNQFELN 401 GNVR+L N IE+ V L VI+ + Q G N L + EA E Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLL 432 + + L+ KG+ AA + + +E + L Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKL 451 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 172/446 (38%), Positives = 266/446 (59%), Gaps = 16/446 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +L+VDD+ ++ L L EGY V A SG + +L + DLV++DLRM +D Sbjct: 2 KGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGLD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + E +++ P V+++T H ++ AV A + G +LTKP + + +A+++ Sbjct: 62 GLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMDK 121 Query: 124 ----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 S + I+ SP + L++ R +A +D +VLI G++GTGKE+ Sbjct: 122 RRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH A + + F+A+NCGA E+LL SELFGH +GAF+GA+S ++GLF+ A GTLF Sbjct: 182 ARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+M +QV+LLRVLQER +G +++I + RI++AT+RDL + RG FR DL Sbjct: 242 LDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRADL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV++L++P L+ R +DIPLLA + A V FS +A++RLM +PGN+ Sbjct: 302 YYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGNI 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTAL-----PTFVEARNQFELNYLRKLLQ 408 R+L N++++ V + VI + Q L G+ AL P + A + E ++R +L Sbjct: 362 RELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELI-ALEELERRHIRDILT 420 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSR 434 GN T AA + G +R ++ + R Sbjct: 421 YCDGNKTRAAEILGIDRVSLWRKVKR 446 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 169/458 (36%), Positives = 276/458 (60%), Gaps = 34/458 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL++DD+P ++L L+ EGY+V TA S E +++N +++++DL++ +G+++ Sbjct: 4 LLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIEI 63 Query: 68 FAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + +P P VI++TA G+I AV A +QG F +LTKP+DK+ L I A E+ Sbjct: 64 LNSLPE-EPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNL 122 Query: 127 ATD---------ERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + E+++ + I+ +S ML++L+ + ++ +VLI G+SGTGKE+ A+A Sbjct: 123 IKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR KPFIAINC A+P+ L+ESELFG+ GAFTGA + + GL ++A+ GTLFLDE Sbjct: 183 IHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++P Q KLLRVLQ+++VR +GS ++VRII+AT+++L + + + +FREDLYYR Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L V++++IP L ER EDIP L + + + ++ V A++ L+ SWPGN+R+L Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFE-------LNY------- 402 +VIE+ + + I+ ++ L + +N F+ +NY Sbjct: 363 ESVIERAIIICEKDKITFNDIQDELR--------VITPKNLFDIDIPDEGINYEELEKEL 414 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++K L + + AAR+ G + F+ L + L N Sbjct: 415 IKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFGLSDN 452 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 162/456 (35%), Positives = 259/456 (56%), Gaps = 23/456 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L++DD+ + GY + A SG GL+++ E++D+VI+DL M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM++ ++ P +I++T +G++ AV A Q+G +FL KP++ + L I+ Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LEQS---------APATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E+ DE++ I+ S M ++L ++ ++ +VLI G+SGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IHN S R P + +N A+PE +LESELFGH +G+FTGA+ R+G F+ A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T FLDEIGDMP Q KLLRVL++ + +GSN I+++VR+I+AT+++L + G+FR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV+ +K+P L ER EDIPLL + +R+ + + + + +A K L+ WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---------TFVEARNQFELN 401 GN+R+L N IE V +T+ + + +E ++ +P T +A E+ Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDA----EIE 416 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 ++ L GN AARM G Y+ L + L Sbjct: 417 LIKCTLASVGGNREEAARMLGIGERTLYRKLDLYRL 452 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 164/386 (42%), Positives = 239/386 (61%), Gaps = 25/386 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L +A+SG E L++L + VD++I D+RM + G++ Sbjct: 23 ILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLET 82 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS--- 124 EI+K+ P V+I+TA+G+ A+ A + G + ++ KP + L I ALE S Sbjct: 83 LKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKLT 142 Query: 125 ---------APATDERWREAIVTRSPL--MLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A A D R I +P+ + +L+ Q VA ++ +VLI G+SG+GKE+ Sbjct: 143 KEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQ---VAPTNATVLIVGESGSGKELV 199 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AI+ S R +KPFIAINC A+PE LLESELFGH RG+FTGA++ R G F+ +GGT+F Sbjct: 200 ARAIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVF 259 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+MP Q K+LRVLQE + LGSN I +VRII+AT++DL A+A+ EFR DL Sbjct: 260 LDEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADL 319 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFV----RAFSTDAMKRLMTASW 349 +YRLNVV + +P L ER EDIP L +H L +H+ ++ S+ AM+ L+ W Sbjct: 320 FYRLNVVKISLPPLRERVEDIPDLIDHFL----AKHRRYLPNAPTCISSQAMRSLLAYHW 375 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDA 375 PGN+R+L NVI++ + L +S I + Sbjct: 376 PGNIRELENVIQRAMVLATSATIQNC 401 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 162/378 (42%), Positives = 229/378 (60%), Gaps = 13/378 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGL-RVLNREKVDLVISDLRMDEMDGM 65 H+L+ DDDPG+ LL EGY AE G E L ++ + DL+I D+RM DG+ Sbjct: 9 HILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGL 68 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +++K PVI++TAHG+ A+ A Q G + ++ KP D + + + + Sbjct: 69 TILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQ 128 Query: 126 PATDERW--------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A+ R R+ ++ SP M + +Q VA +D +VLI G++GTGKE+ A I Sbjct: 129 LASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLI 188 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + P + +NC ALPE LLESELFGH +GAFTGAV+ R+G F+ A G++FLDEI Sbjct: 189 HVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEI 248 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+M Q KLLR+LQER+ +G + ++VR+I+AT+RDL + G FREDLYYRL Sbjct: 249 GEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRL 308 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFV--RAFSTDAMKRLMTASWPGNVRQ 355 NV++L +PAL +R DIPLLA L + R+ P S +AM+RL WPGNVRQ Sbjct: 309 NVITLHLPALRQRIGDIPLLAEFFLDKY--RYAPSSPPARISEEAMERLNNYDWPGNVRQ 366 Query: 356 LVNVIEQCVALTSSPVIS 373 L + IE+ V L+ VI+ Sbjct: 367 LEHEIERAVILSRGNVIT 384 >UniRef50_Q01Q08 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q08_SOLUE Length = 428 Score = 300 bits (769), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 170/416 (40%), Positives = 255/416 (61%), Gaps = 11/416 (2%) Query: 25 LTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILT 84 L EGYSV +S E + + + D + D+++ + G+ L +++ P I+++ Sbjct: 3 LEREGYSVNVCKSVTEFGKHPDAGRADAYMLDMKLPDGSGIDLLKVVKQNGATAPAIMIS 62 Query: 85 AHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-PATDERWREAI------V 137 HG+I DAV AT+ G F FL KP+ +D + A+ +A+EQS +ER RE + + Sbjct: 63 GHGTIADAVEATRAGAFDFLEKPLSRDRVLLAVKNAMEQSTLRQENERLRELVGSTPKMI 122 Query: 138 TRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALP 197 +P R +EQA + A+SD VL+ G+SGTGKE+ A IH+ASP + PF+ +NC A+P Sbjct: 123 GATPAWQRAVEQASMAARSDARVLLIGESGTGKELLAAHIHSASPFANGPFVKVNCAAIP 182 Query: 198 EQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKV 257 +LLE+ELFGH +G+FTGA + R G F+ A+GGT+FLDE+GD+ Q KLLRVLQE + Sbjct: 183 TELLETELFGHEKGSFTGATNMRRGKFELADGGTIFLDEVGDLHGGSQAKLLRVLQEGEF 242 Query: 258 RPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLL 317 +G I ++VR++SAT+RDL +A +FREDLYYRL+VV +++PAL ER DI LL Sbjct: 243 HRVGGEAIIRVSVRVVSATNRDLQAMVAAEKFREDLYYRLSVVPIRVPALRERPHDIRLL 302 Query: 318 ANHLLRQAAERHKPFVRAFSTDAMKRLMTA-SWPGNVRQLVNVIEQCVALTSSPVIS-DA 375 A + L + R+ F R +++ ++ A WPGN R+L NV+E+ LT ++ DA Sbjct: 303 AEYFLEEFCSRNN-FKRKVMDESVYPMLEAYHWPGNARELRNVVERMAILTPGERLTRDA 361 Query: 376 L-VEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 + VE ++ E T EAR E ++ + L+ + NV+ AAR G RT +K Sbjct: 362 IPVEVRVQREAGPKSTIQEARESAEREHILRALEESSWNVSGAARTLGMERTNLHK 417 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 177/464 (38%), Positives = 258/464 (55%), Gaps = 45/464 (9%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + +VDDD + +L L G + T E+GAE L L + D+++SD+RM MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 +I++ P +PVII+TAH + AV+A QQG F +L KP D D ++ A+ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 124 --------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + P TD I+ +P M + +++S +SVLING+SGTGKE+ A Sbjct: 126 QQPRNVQLNGPTTD------IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAH 179 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR PFIA+N A+P+ L+ESELFGH +GAFTGA + R+G F+ A+GGTLFLD Sbjct: 180 ALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q +LLRVL + + +G + ++VRII+ATH++L + + G+FREDL++ Sbjct: 240 EIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ER EDIP LA H L+ AA + + L +WPGNVRQ Sbjct: 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 Query: 356 LVN----------------------VIEQCVALTSSPVISDALVEQALEGENTALPT--- 390 L N + E VA ++S + D+ + + AL + Sbjct: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 Query: 391 --FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLL 432 EA+ + E L L+ T+G+ AAR+ G R + L Sbjct: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 166/439 (37%), Positives = 257/439 (58%), Gaps = 19/439 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ +L L L G+ AE+G + L L+ + D+++ D++MD MDG+ Sbjct: 3 ILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGLTF 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + + +PVI++TA ++ AV + + G +LTKPVD L A++ EQS Sbjct: 63 LGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKINEQSGDV 122 Query: 128 TD--ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 E +R V + ++EQ +LVA +D +VLI G+SGTGKEI A++IH+ S R Sbjct: 123 LTPVENYRFGGVYTQEGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDNSKRAQ 182 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 +P++AINC AL E ++ESELFGH +GAFT AV + +GLF+AA+GGTLFLDEIG++ +Q Sbjct: 183 RPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGELSLNVQ 242 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLRVLQE +G R + NVRI++AT+R+L K +G+FREDLY+RL V +++P Sbjct: 243 AKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVFPVEVP 302 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L ER E+I L + + AE+ +++ +++L +PGN+R+L N++E+ + Sbjct: 303 PLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIVERSII 362 Query: 366 LTSSPVISDALVEQALEGENTALPTFVEARNQF------ELNYLRKLLQITKGNVTHAAR 419 LT+ + E LP F R+ E + + K L+ T GN T AA Sbjct: 363 LTTGTKL-----------EPVTLPAFGTERDGGLSIRGNERDLIIKALKKTGGNKTKAAE 411 Query: 420 MAGRNRTEFYKLLSRHELD 438 + +R + L +L+ Sbjct: 412 ILQISRRTLHNKLKEFDLE 430 >UniRef50_A5EVU6 Two-component response regulator PilR n=2 Tax=Cardiobacteriaceae RepID=A5EVU6_DICNV Length = 528 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 150/363 (41%), Positives = 234/363 (64%), Gaps = 3/363 (0%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H L+VDD+ + +L+ + L + +A + +++L + D+V D+R+ + DG+ Sbjct: 3 HALVVDDEKDICELIEMALMGQYIEFKSAFNVKTAIKLLKENRFDVVFCDVRLPDGDGLD 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE---Q 123 L A IQK P PV ++TAHG++ A+ A + G F F+ KP + L AL + Sbjct: 63 LLAHIQKQYPNTPVCMITAHGNMDMAIRALKIGAFDFINKPFELKQLRTICRSALSSQPK 122 Query: 124 SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 + E + A++ +P+M ++ VA+S V I+G+SGTGKE+ A++IH S R Sbjct: 123 NKKDNGEPRKTALIGEAPVMEKVRALIAKVARSQAPVFIHGESGTGKEVAARSIHEQSNR 182 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 FIA+NCGA+PE L+ESE FG+ +G+FTGA + +GLF AA GGTLFLDE+ D+P Sbjct: 183 ADGAFIAVNCGAIPENLVESEFFGYKKGSFTGANQDTDGLFVAANGGTLFLDEVADLPLS 242 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 +QVKLLR +QER VRP+G +++ ++VRIISATH +L + + GEFREDLYYRLNVV+L Sbjct: 243 MQVKLLRAIQERAVRPIGGDKEEKVDVRIISATHDNLAEKVQLGEFREDLYYRLNVVALT 302 Query: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 +P L +RT D+ +L + LL++ AE+ + + +A+ +L + ++PGNVR+L N++E+ Sbjct: 303 MPPLRDRTGDVNILTDFLLKKLAEQRGYPLAKLTDEALNKLNSYAFPGNVRELENILERA 362 Query: 364 VAL 366 + Sbjct: 363 LTF 365 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 165/435 (37%), Positives = 258/435 (59%), Gaps = 14/435 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L++DD L++L L S G+ V+ +E +R+L + + LVI+D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG + +++ G+ V+ +T +I A+ A + G +L KP + L+ AID A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 L------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L +Q++P+ R + I+ S M+++ E A S +VLI G+SGTGKE+ A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R PF+ +NCG +PE LLESELFG+ +GAFTGA +R G FQ A+ GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI + P+Q+KLLRVLQE ++ LGS++ +N+RI++AT+R L + + +G FREDL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+++ P L +R +DI LL NH ++ +ER+ S + L WPGNVR Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVIS----DALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 +L NVI + +++ SS + + + GE + T E E ++R++L Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSAVGEGSLNRTLAEV----EAEHVRRVLDSV 416 Query: 411 KGNVTHAARMAGRNR 425 GN T AAR+ G +R Sbjct: 417 GGNKTLAARILGVDR 431 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 171/439 (38%), Positives = 248/439 (56%), Gaps = 16/439 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ +L+ L L EGY + A SG E L L R+ DL++ D+ M MDG+ + Sbjct: 5 ILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDGLAV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-QSAP 126 EI+K +PVII++ HG+I AV AT+ G F F+ KP+ + + +I +AL+ Sbjct: 65 LEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFHRLE 124 Query: 127 ATDERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + WR+ + RS + L EQ R A ++ +VLI G++GTGKE+ A+ IH Sbjct: 125 EENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMIHQL 184 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R+ +P + +NC A+PE L+ESELFGH +GAFTGA R G F A GGTLFLDEIGDM Sbjct: 185 SKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEIGDM 244 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q K+LR+LQE+ +G +R I ++VR+++AT++D+ + + G FR+DLYYRLNV+ Sbjct: 245 SLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRLNVI 304 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + +P L +R +DIPLL L A + L SWPGN+R+L N I Sbjct: 305 PIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELRNFI 364 Query: 361 EQCVALTSSPVIS---------DALVEQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 E+ V +T I + L + E T EAR+ FE YL + L Sbjct: 365 ERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKLDEFA 424 Query: 412 GNVTHAARMAGRNRTEFYK 430 NV+ A G R+ ++ Sbjct: 425 WNVSLTAAQVGLERSHLHR 443 >UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator n=9 Tax=Cystobacterineae RepID=Q1D5T0_MYXXD Length = 477 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 192/463 (41%), Positives = 253/463 (54%), Gaps = 35/463 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTS-EGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDDD G+ L L S G V A G + L L+ +LVISDLRM MDGM Sbjct: 12 RVLVVDDDAGVRFTLREMLKSLSGVEVDEAVDGEDALEKLSARPYELVISDLRMPRMDGM 71 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + VI++TAHGS AV A + G + + KP D D L + ALE S Sbjct: 72 ELVRRLSLFSRSPRVIVITAHGSERFAVEAMKAGAYDYFRKPFDVDELLAVVSRALE-SV 130 Query: 126 PATDERWR--------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 +E R ++V S M RL + + DV+VLI G+SGTGKE A A+ Sbjct: 131 RLREENARLSGELNLSRSLVFVSEPMARLAQLVQRAGSRDVTVLITGESGTGKERVADAL 190 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 ASPR ++PF+ NC AL E+L E+ELFGHARGAFTGA R GLF+ A+GGTL LDE+ Sbjct: 191 VRASPRANRPFLRFNCAALTEELAEAELFGHARGAFTGAHRARPGLFREADGGTLLLDEV 250 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ LQ +LLRVLQE +VRP+G +R + ++VRII+ATHRDL + G FREDLYYRL Sbjct: 251 GELAPTLQARLLRVLQEGEVRPVGEDRPVTVDVRIIAATHRDLRRLALEGAFREDLYYRL 310 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV L++P L ER EDIP+LA L + +R ++L WPGNVR+L Sbjct: 311 NVVQLRVPPLRERPEDIPVLARVFLDRFIDRFHTGPLKIPDGFFEQLRALPWPGNVRELE 370 Query: 358 NVIEQCVALTSS--------PVISDALVEQALEGENT--------------ALPTFVEAR 395 N +E VAL+S P A + G ++ L VEA Sbjct: 371 NTLESLVALSSEGRLDLGQLPSAEPAGADSGFPGASSDPVRPGPQDGAPGAGLKERVEA- 429 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +E + L+I GN + AAR G R + L ++ LD Sbjct: 430 --YERGLVLDALRIAGGNRSEAARRLGIGRATLHDKLRKYGLD 470 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 25/455 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS KP +L DD+ ++ L GY+V SG E ++ + D+ I D+ M Sbjct: 1 MSKKPT-ILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++ +++ ++P VIILT GSI +AV A + G + +LTKP L + A Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRA 119 Query: 121 LEQ----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ D + +++ SP + + + A SDV+VLI G+SGTGK Sbjct: 120 LEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S R KPF+ +NC L E LLESELFGH +GAFTGA +R GLF+ AEGG Sbjct: 180 ELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++ Q KLLRV+Q ++R +G NR I ++ RII+ATH++LP + G FR Sbjct: 240 TLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV++L++P+L ER +D+ L H L++ + + +A+ + WP Sbjct: 300 EDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCKGERTM--DMHPEALHAMTLYDWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVIS-----DALVEQALE--GENTALPTFVEARNQFELNYL 403 GN+R+L N IE+ V L +IS D + + E G+N + A ++ E N++ Sbjct: 358 GNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEI-----ALSEVEKNHI 412 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 ++L+ + AA+ G + Y + + +D Sbjct: 413 IQVLKEKNWHKPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 162/399 (40%), Positives = 252/399 (63%), Gaps = 13/399 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + + L L EGY V TA G +GL + DLV+ D + + +G+++ Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE----- 122 EI+ + VI++TA+G++ +AV A Q G +F+ KP D + L + A+ Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 123 ----QSAPATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 Q A +R+ E I+ +S MLR+ + +A S +VL+ G+SGTGKE+ A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + F+ IN G++P LLES LFGH +GAFT A+++++GLF+ A+GGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G M Q K+LRVLQ+RK LG ++I ++VRII+AT+ DL + + G+FREDL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERH-KPFVRAFSTDAMKRLMTASWPGNVRQL 356 NV+++ +P L +R D+PLL H +++ E + KP +R + +A++ L+ +W GNVR+L Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMR-MTPEALRPLLDYNWQGNVREL 380 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEAR 395 NVIE+ V L + P I+ L+ + G ++L +FVE R Sbjct: 381 ENVIERAVVLANGPSITIDLLPDNVVGRGSSL-SFVETR 418 >UniRef50_A1SUB0 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Psychromonas ingrahamii 37 RepID=A1SUB0_PSYIN Length = 472 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 171/458 (37%), Positives = 253/458 (55%), Gaps = 35/458 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDDP + LL + EGY V G L ++ D++++DLRM MDG +L Sbjct: 15 VLIVDDDPDICSLLSYLMKREGYVVEIVHDGMAALELMRNRVPDIILTDLRMPRMDGFEL 74 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++ ++ +PV+ILTA+ + AV + ++G +L KP D + + L Q Sbjct: 75 LKQVKLIKQDLPVVILTAYAGVHGAVESMKEGADDYLAKPFDNSKVVMLVHRILLQHNCY 134 Query: 128 TDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + E ++ S ++ L Q +LVAQS+ +V+I G +G GKE+ AQA Sbjct: 135 ERGKLNEQPIEGGVHDIVTVMGPSAIIHTLAAQVKLVAQSNFNVIIQGATGVGKEVVAQA 194 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SP S PF+ ++CGA+PE LLESELFGH +GAFTGA ++G F+AA GGTLFLDE Sbjct: 195 IHAQSPYASGPFVPVDCGAIPEMLLESELFGHEKGAFTGAYRAKQGKFEAARGGTLFLDE 254 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +MP Q K+LRV+QE+ + P+GSN+ I I+VR+I A+H +L +A G FREDLYYR Sbjct: 255 IANMPLTSQAKILRVMQEKIIFPVGSNQPIKIDVRLIVASHENLEAKVAEGTFREDLYYR 314 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 N ++K+P L+ER ED LA + + V S A+ ++ T W GNVR+L Sbjct: 315 FNEFTIKVPLLSERKEDQIYLAKRFMNETNRELGKNV-TLSIGAINKMQTYEWRGNVREL 373 Query: 357 VNVIEQCVALTSSPV----------ISDALVEQALEGEN----TALP---TFVEARNQFE 399 VI + V L + + I D L G N ++LP + + E Sbjct: 374 RAVIRRAVLLAQTEIREEHLSIRSRIRDKDESGQLNGINFTTASSLPLKEIVRDCSERVE 433 Query: 400 LNYLRKLLQITKGNVTHAARMAG------RNRTEFYKL 431 L ++L+ T GN AAR+ N+ ++Y+L Sbjct: 434 KKTLAQVLRETNGNKAKAARILKIDYKTLLNKVKYYEL 471 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 159/396 (40%), Positives = 239/396 (60%), Gaps = 17/396 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + P +L++DD+ + L +GY V A SG + ++ ++ D+ + DL++ Sbjct: 1 MVNAPG-VLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD---------KD 111 + DG+ L I+ VQP VII+T + + AV A Q G F ++ KP D + Sbjct: 60 DADGLSLLQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKPFDDILLIEKLIEK 119 Query: 112 ALYQAIDDALEQSAPATDERWREAI---VTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 AL + D + + E I V R+P M++L+ A +A D++VLI G++GT Sbjct: 120 ALNFGMTDGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGT 179 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+ +H AS R+ KPF+AINCGALPE LLESELFGH RG+FTGA R+G+F+ A Sbjct: 180 GKEVLARFVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELAN 239 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GTLFLDEIG+ +QVKLLRVL+ + +G + + NVRII+AT+ DL +A+ + + Sbjct: 240 NGTLFLDEIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQ 299 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL+YRL+V+ L +P L ER EDIP H + + ER+ V AF+ ++ ++ Sbjct: 300 FREDLFYRLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYH 359 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGE 384 WPGN+R+L N +EQ +AL +A++ + L G+ Sbjct: 360 WPGNIRELANSVEQALALCD----GNAVLPEHLSGK 391 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 158/374 (42%), Positives = 232/374 (62%), Gaps = 8/374 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L LT E Y V TA +G + L + K D++I+D+RM E DG Sbjct: 5 RVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDGFG 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS-A 125 L +I+ +PVI++TA G+ A+ A + G F ++ KP D D I A+ QS Sbjct: 65 LLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDT 124 Query: 126 PATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 AT + +E I+ SP M + + VA S+ +VLI G+SGTGKE+ A+AIH Sbjct: 125 VATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIH 184 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R + PFI +NC LP+ LLESELFG+ +GAFTGA S + G F+ A GT+F DEIG Sbjct: 185 YNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIG 244 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++ Q KLLR +QE++ +G + I +NVRI++AT+R L +++ GEFREDL++RLN Sbjct: 245 EISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLN 304 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV+++IP L +R EDIPLL H L + + ++ FS +A+K L+ WPGNVR+L N Sbjct: 305 VVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELEN 364 Query: 359 VIEQCVALTSSPVI 372 V+E+ + + +I Sbjct: 365 VVERSIIMARGAII 378 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 177/450 (39%), Positives = 255/450 (56%), Gaps = 31/450 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+PG+L L L +V TA + +GL + RE+ D VI D+R+ +M G+ Sbjct: 4 VLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGLDA 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE----- 122 F I++ P +PVI++TAHGS A+ AT++G F +L KP+D L + + A E Sbjct: 64 FLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRLAQ 123 Query: 123 -------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + P D E IV + P ML + + +A DV VLI G+SGTGKE+ A+ Sbjct: 124 VAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVAR 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A++ SPR+ KPF+AINC A+P+ LLESELFGH +GAFTGA R G F+ A+GGT+FLD Sbjct: 184 ALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP Q K+LR+LQ+++ +G N + +VR+I+AT+RDL + +FREDL Y Sbjct: 244 EIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLN ++ +P L +RT DI L +H + A + K VR A+ L + WPGNVR+ Sbjct: 304 RLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNVRE 363 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG---------ENTALPT----------FVEARN 396 L N + V VI+ + +L G E TAL T + + + Sbjct: 364 LQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTH 423 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRT 426 + L +L+ GN AA G +RT Sbjct: 424 TVDRALLTAVLEHVHGNQKQAADRLGISRT 453 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 173/451 (38%), Positives = 254/451 (56%), Gaps = 20/451 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM-----DEM 62 LL+VDD+ + + L L+ Y++ A E L+V +V DL + D Sbjct: 4 LLIVDDNGDIRRQLKWGLSKAPYALHFATHVEEALQVFQAVTPGVVTLDLGLPPHPEDAS 63 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-- 120 G+ ++ +P VI++T +A A + G + F KP+D L I+ A Sbjct: 64 QGLACLEQMIAARPSTKVIVITGFDGQENARRAVELGAYDFFRKPLDLGELKVMINRAFH 123 Query: 121 ---LEQSAPATDE------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 +E+ APA R R IV P M + VA SD VL++G+SGTGKE Sbjct: 124 LLEIERVAPAETPKKPAAPRLRHGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKE 183 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A AIH ASPR +P ++INCGA+PE LLESE FGH RGAFTGA + +G + AE GT Sbjct: 184 LVAMAIHQASPRRQQPLVSINCGAIPENLLESEFFGHERGAFTGATNTVKGKVEYAENGT 243 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIG++P LQVKLLR LQ+ + + +G + +++NVR+++AT+ ++ +AM G+FRE Sbjct: 244 LFLDEIGELPVNLQVKLLRFLQDMRFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFRE 303 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYR+ VV + +P L +R ED+ LLANH L ++ ++ FS +AM+ + WPG Sbjct: 304 DLYYRIGVVGIHLPPLRDRGEDVVLLANHFLEIHGKQLPKKIQGFSPEAMEAIRNYPWPG 363 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV----EQALEGENTALPTFVEARNQFELNYLRKLL 407 NVR+L N + + + L I+ + E + G A T EAR Q E + + L Sbjct: 364 NVRELENKVRRAIILVEGSRITPQSLGLAGEASSPGPARAETTLREARTQLERQMMLQAL 423 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + +GN+ A+ G +R FY LL +HE+D Sbjct: 424 RRFEGNIVKASEALGVSRPTFYDLLRKHEID 454 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 169/454 (37%), Positives = 252/454 (55%), Gaps = 25/454 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +++V+DDP + + L + GY + + GA+ L +L+ E D+ I DL++ +DG+ L Sbjct: 5 IIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLTL 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD-----ALE 122 I+ + P VII+TA + AV A + G F ++ KP + L I+ LE Sbjct: 65 LKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFRTLE 124 Query: 123 QSAPATDERWR-----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + E + E IV+ S +M + ++ VA++DV VLI G+SGTGKE+ A AI Sbjct: 125 KEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAI 184 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 S R KP+I INC A+PE L ESELFG+ +GAFTGA ++G F+ A GGT+F DEI Sbjct: 185 QKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDEI 244 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDMP LQ KLLRV+++ V LG I INVR I AT ++L + + +FREDL+YR+ Sbjct: 245 GDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYRI 304 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ + IP L ER EDIP+L L+ +E++ S A + L++ +PGNVR+L Sbjct: 305 NVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVRELK 364 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTF-----------VEARNQFELNYLRKL 406 + IE+ + L+ VI + L E + L +F E FE N + K Sbjct: 365 HAIERALLLSKDGVIDI----KHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKA 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 LQ T AA+ G +R ++ + + ++ N Sbjct: 421 LQECGWKKTEAAKKLGISRKALWEKIKFYGIEPN 454 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 297 bits (760), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 243/399 (60%), Gaps = 7/399 (1%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A LL++DD+ + L L E Y V ++G +GL ++ ++K DLV+ D++M++MDGM Sbjct: 2 AKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDGM 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ + P +P I+++ HG++ A+ A+++G F F++KP D + L + +AL++ Sbjct: 62 EVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRGN 121 Query: 126 PATDERWREAIVTRSPLML-------RLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 T+ + + V+++ +L ++ E VA ++ VLI G +G+GKE+ A+ +H Sbjct: 122 LVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWLH 181 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R P I +NC A+P +L+ESELFGH +G+FT AV R G F+ A GGTLFLDEIG Sbjct: 182 EKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEIG 241 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DM Q K+LR LQE K+ +G +++++NVR+++AT++DL K + G FR DLY+RLN Sbjct: 242 DMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRLN 301 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+++ +P L ERTEDIP +A + L + + V+ S AM L W GNVR+L N Sbjct: 302 VINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELHN 361 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ 397 +IE+ + L+ + + ++ A G T + A Q Sbjct: 362 MIERLIILSDKVITENDVIAFANPGGGTNIGAVNTANGQ 400 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 296 bits (759), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 165/397 (41%), Positives = 240/397 (60%), Gaps = 9/397 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 PA +L+VDD+ +L L L GY A SG L V++ VD V+ D++M +MDG Sbjct: 2 PASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDG 61 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + A++ +++P +PVI+++ HG+I AV ATQ G FL KP+ ++ L A+ + L+ Sbjct: 62 LTALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQ 121 Query: 125 APATD------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 A + + R +V P M R+ + A S+ VLI G++GTGKE+ A+A+H Sbjct: 122 AAMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALH 181 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R +PF+ +NC A+P +L+ESELFGH +GAFTGAVS R G F+ A GTLFLDEIG Sbjct: 182 QHSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIG 241 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DMP +Q KLLRVLQE ++ +G ++VR+++AT+++L +A G FREDLYYR+N Sbjct: 242 DMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRIN 301 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV + P L ER ED+P L L +A ++ S DA+ + +PGNVR+L N Sbjct: 302 VVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRN 361 Query: 359 VIEQCVALTSSPVI--SDALVEQALEGENTALPTFVE 393 ++E+ L P++ +DAL E G N P VE Sbjct: 362 LVERLAILCEGPIVTRTDAL-ELLPRGRNVPPPAPVE 397 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/392 (41%), Positives = 237/392 (60%), Gaps = 15/392 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKV-DLVISDLRMDEM 62 KPA +L++DDD + L L+S GY+V+ A +G +G+ + + DLV+ D+RM M Sbjct: 6 KPASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDVRMSGM 65 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G++ I+ P VI++TA G+ A+ A + G F ++ KP D + D AL+ Sbjct: 66 GGIEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALADAALK 125 Query: 123 QSA---------PATD-ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 A P + + +RE IV SP+M + + V SDV+V+I G+SGTGKE+ Sbjct: 126 TRADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKEL 185 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A++I S R+SKPFIA+NC A+P+ L+ESELFGH +G+FTGA R G F+ +GGT+ Sbjct: 186 VARSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGTI 245 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM Q K+LRVLQ +++ +G I ++VR+++AT++DL + FRED Sbjct: 246 FLDEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFRED 305 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV +K+P L ER EDIP + + L+ ++ K S +AM L SWPGN Sbjct: 306 LYYRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRHSWPGN 365 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGE 384 VR+L NVI + + +A++E+ L E Sbjct: 366 VRELENVIYRSAVIAQ----GEAILEKDLPAE 393 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 263/446 (58%), Gaps = 19/446 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+P +L LG LT EG+ VVTA +G E ++ L++ DL++ D+ M MDG++ Sbjct: 5 ILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGLET 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++K P +PV+++T HG+I AV AT+ G + F+ KP+ + + I++AL Sbjct: 65 LKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRRLE 124 Query: 128 TDERW-------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + + + +I SP ++ + Q VA +D VLI+G++GTGKE+ A+ IH+ Sbjct: 125 EENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIHHL 184 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R+ P + +NC ++ ++ +ESELFGH +GAF GA + G F+ A GTLF DE+GDM Sbjct: 185 SARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVGDM 244 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q ++LRVL+ +K + +G R I ++VR+I++T+++L + + +G FREDLYYRLNVV Sbjct: 245 DMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLNVV 304 Query: 301 SLKIPALAERTEDIPLLANHLLRQ-AAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + +P L ER +DIP L R+ AA + + S +A++ LM WPGNVR+L N+ Sbjct: 305 PIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELRNL 364 Query: 360 IEQCVALTSS---------PVISDALVE--QALEGENTALPTFVEARNQFELNYLRKLLQ 408 +E+ V T + P D E Q + + ++ +A+ FE+ Y+++ L Sbjct: 365 VERLVISTKASHVDIRHIPPAYKDCAQEAIQDCGLDVFEVDSYKDAQKAFEIAYIQRQLV 424 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSR 434 + A G +++ K+L + Sbjct: 425 KHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_A1K925 Sigma-54 dependent response regulator n=5 Tax=Proteobacteria RepID=A1K925_AZOSB Length = 492 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 166/388 (42%), Positives = 235/388 (60%), Gaps = 14/388 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 ++L+V+DD L + L L G+ V + G L L R+ +LV+SDLRM MDG+Q Sbjct: 6 NILVVEDDAALRDAVCLTLEMAGHGVTGVDGGPSALAELERQSFNLVVSDLRMQPMDGLQ 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD--ALEQS 124 L EI+ P +PV+++TA+G + AVAA + G FL KP + + L + + A++ S Sbjct: 66 LLGEIRARLPQLPVLLMTAYGDVDKAVAAMRGGACDFLMKPFEPEVLLENVRRYAAVQPS 125 Query: 125 APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 A E + P LL A VA++D +VL+ G+SGTGKE+FA+ IH+ S R Sbjct: 126 A--------EDTIAEDPHTRNLLALAARVAETDATVLLTGESGTGKEVFARYIHHHSLRR 177 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 PF+AINC A+PE LLE+ LFG+ +GAFTGA + + G F+ A+ GT+ LDEI +MP L Sbjct: 178 KGPFVAINCAAIPENLLEATLFGYEKGAFTGAQTAQPGKFEQAQDGTILLDEISEMPLGL 237 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q K+LRVLQER+V +G + + +++R+++ ++RD+ K +A G FREDLYYRLNV L I Sbjct: 238 QAKMLRVLQEREVERVGGKKPVSLDIRVLATSNRDMVKEVAAGRFREDLYYRLNVFPLAI 297 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P+L ER DI LA H L + +R K R FS +A L WPGNVR+L N + + + Sbjct: 298 PSLRERPGDILPLARHFLGRHGDRLKRHAR-FSPEAEFLLARYHWPGNVRELENTMHRAL 356 Query: 365 ALTSSPVISDALVEQAL---EGENTALP 389 LT +S V L GE A P Sbjct: 357 ILTVGDTVSAETVRLCLPHWTGEAMASP 384 >UniRef50_B5JI58 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI58_9BACT Length = 473 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 168/469 (35%), Positives = 260/469 (55%), Gaps = 32/469 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M++ A +LL++DD L + + L S Y V G G++ + DL+I+D+RM Sbjct: 1 MTNSLAKILLIEDDKSLGESVSKALRSTNYGVDLVGDGISGIKAAQNNRYDLIITDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG+ + + P+I+ TA+ + A+ AT+ G + +LTKP+D + L Q+I+ A Sbjct: 61 GADGLDVIEALGPQLQQTPIILTTAYSTPEKAIEATRLGAYEYLTKPLDIEVLIQSIEKA 120 Query: 121 LEQSAPATDERWR--------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 LE + +++E + ++ S M + + A + +VLI G++G GKE+ Sbjct: 121 LEAARASSNETMGSEALPTEPQTLIGSSSAMHEVYKSIGRNADNAATVLIAGETGVGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A A+H S R +PF+AINC ALPE LLESELFG+ +GAFTGA +N+ G F+ + GTL Sbjct: 181 VANALHKFSKRKEEPFVAINCAALPENLLESELFGYEKGAFTGADTNKAGCFEQSAAGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGD P +QVKLLRVLQE+KVR +GS+++ +++ +I++ATH++L + + FRED Sbjct: 241 FLDEIGDAPLSIQVKLLRVLQEKKVRRIGSHKEREVHCKIVAATHKNLLSMVEQKTFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YR+NV + IP L R DI L LL + + S +A++ L +WPGN Sbjct: 301 LFYRINVAQISIPPLRHRRGDIVELCKSLLFKRGHEQGITSPSISKEALQLLRRYNWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYL--------- 403 VRQL N I + + + I+ LVEQ L E + P E+ +Q +L Sbjct: 361 VRQLDNTISKLLIRSKGYAITKELVEQLLRNEEISQPKNSESLSQIVSKFLDTSEKDQKG 420 Query: 404 ---------------RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + L ++GN+ A+R G +R K +S+ EL Sbjct: 421 DAYDSIIEAVDKELISQALARSEGNLAQASRWLGLSRLTLRKKISKLEL 469 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 258/453 (56%), Gaps = 35/453 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L + L+ GY+V TA SG+E + L+ K D+ + D+R+ + DG+ L Sbjct: 6 ILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLDL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS--- 124 + + + VI++TA+ + AV A + G ++ KP + +AL ID A E+ Sbjct: 66 LQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFEKRQLR 125 Query: 125 -------APATDERWREAIVTRSPLMLRLLEQARLVAQSDV-SVLINGQSGTGKEIFAQA 176 + + +V S M+ L + ++ A +D +VLI G+SGTGKE+ A+A Sbjct: 126 EKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IHN S R PF +NC A+PE LLESELFGH +GA+T A R+G+F+ AEGGT+FLDE Sbjct: 186 IHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGTVFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q K+L+V++ ++ R LG+ DI +VRII+ATH+DLP + FR DL+YR Sbjct: 246 IGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRGDLFYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+++ +P L ERT+DIP L + + + E + V S + M L WPGNVR+L Sbjct: 306 LNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPGNVREL 365 Query: 357 VNVIEQCVALTSS----PVISDALVEQALE-GENTAL-------------------PTFV 392 N IE+ + L S PV +A ++Q E +N +L PT Sbjct: 366 RNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTGG 425 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNR 425 + + E +R L+I+ GN T AA+ +R Sbjct: 426 ISLEELERQLIRMGLEISGGNQTKAAKYLKMSR 458 >UniRef50_C1A5W0 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5W0_GEMAT Length = 496 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 179/462 (38%), Positives = 264/462 (57%), Gaps = 34/462 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD L + L +G++V G E L ++ R++ DL++ DL M + GM++ Sbjct: 23 ILVVDDDRTLREGCVSVLQMDGHAVTATGRGDEALDLVRRKRFDLILVDLYMTPISGMEV 82 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + + V+++T + ++ ++ A + G + +L KP L I A A Sbjct: 83 LKAAVEAHKQVIVVVMTGNPTVASSIEALRAGAWDYLPKPFSASHLQVLIGRAAHAVATT 142 Query: 128 TDER--WREA-IVTRS------------PLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 D R R A +VT+S P + +E A+ VA +D SV+I+G+SGTGKE+ Sbjct: 143 KDVREPVRPAGLVTQSGAGELMSLLGVSPTFRKAVELAQKVAATDASVMISGESGTGKEM 202 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 AQ IH S R ++ + INC ALP+ LLESE+FGH +GAFTGA ++ GL + A GGTL Sbjct: 203 IAQFIHKHSRRTARKLVPINCAALPDNLLESEMFGHRKGAFTGADRDKAGLLEMANGGTL 262 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGS-NRDIDINVRIISATHRDLPKAMARGEFRE 291 FLDE+ +M PLQ KLLRVLQ+ VR LGS +D ++VR ISAT+RD +A+ +G RE Sbjct: 263 FLDELTEMAMPLQAKLLRVLQDGVVRRLGSETQDAVVDVRFISATNRDPQEAVQQGILRE 322 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF---VRAFSTDAMKRLMTAS 348 DL+YRL VV +K+P L +R EDIPLLA + L+++ ERH+ F+ + + L + Sbjct: 323 DLFYRLRVVPIKLPPLRKRVEDIPLLAEYFLKRSWERHRSHEASAPTFTAETIAFLQSRP 382 Query: 349 WPGNVRQLVNVIEQCVALTSS---------PVISDALVEQALEGENTAL--PTFVEARN- 396 WPGNVR+L NVIE + P+ +A V G A+ F A++ Sbjct: 383 WPGNVRELQNVIEHVAVIAEGGRPIAPDDIPIYDEAPVGDGDAGFPAAIMNEAFHSAKDS 442 Query: 397 ---QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 FE YL +L GN++ AAR+AG +RT Y+L+ +H Sbjct: 443 LVTHFEKEYLARLTARAGGNMSKAARLAGIDRTTLYRLMEKH 484 >UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=C6HUB1_9BACT Length = 473 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 161/375 (42%), Positives = 230/375 (61%), Gaps = 11/375 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +LLV+D+P + + LRL+ GY V TA S EGL L D+++ D+ M M G+ Sbjct: 3 SSILLVEDEPLIREAFALRLSERGYQVTTATSAEEGLVALRTSPPDILLLDIVMPGMSGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L EI+ +PVI+LTA G++ DAV A + G F F+ K +D D L+ ++ +A+ A Sbjct: 63 DLLREIRASDLDIPVILLTARGTVKDAVEAMRLGAFDFVAKNIDMDELFLSVSNAVRFLA 122 Query: 126 PATDERW---REA-------IVTRSPLMLRLLEQ-ARLVAQSDVSVLINGQSGTGKEIFA 174 + + R+ RE+ ++ SP L +Q A LV V+VL+ G++GTGKE A Sbjct: 123 LSREARYWTSRESGRYSLDRMIAESPAGASLRDQVAGLVENDRVTVLLQGETGTGKEYVA 182 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H P +PFI ++C A+P +L ESELFG+ +G+FTGA R GL + AEGGT+ L Sbjct: 183 KVLHYNGPSGDRPFIEVDCPAIPSELFESELFGYEKGSFTGATGRRIGLVELAEGGTVLL 242 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+P PLQ KLLRV++ER +R +G +NVR ++ATHRDL A+ G FREDL+ Sbjct: 243 DEIGDLPLPLQAKLLRVIEERTIRRVGGGAPFPVNVRFMAATHRDLRVAVKEGRFREDLF 302 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV+L IP L ER DI LA L +A+ + + S A K L S+PGN+R Sbjct: 303 YRLNVVTLAIPPLRERVGDIVPLAERFLHLSAQTFRKKILRLSPAAQKLLKGYSFPGNIR 362 Query: 355 QLVNVIEQCVALTSS 369 +L N++E+ V S Sbjct: 363 ELSNLVERAVLFCSG 377 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 155/377 (41%), Positives = 237/377 (62%), Gaps = 13/377 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L+++D+ LL RL +GY + SG EGL+ + D+ + D+R+ MDG+Q Sbjct: 10 HVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPGMDGIQ 69 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS-- 124 + ++++Q V+++T HG+I A+ A +QG + +LTKP+D L + ALE+ Sbjct: 70 VLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKALEKRRL 129 Query: 125 -------APATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A D + E IV SP +L++++ R A D+ VLI G+SGTGKE+ A+A Sbjct: 130 ADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKELIAKA 189 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ S R KP+IAINCG LP LLESELFGH +GAF+GAV++R GL +AA GTLFLDE Sbjct: 190 LHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGTLFLDE 249 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ LQ KLLR L+ + R +G+NR VR+++AT+++L +A+A G+FREDLYYR Sbjct: 250 IGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFREDLYYR 309 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+ + L++P L ER DIPLL + L++ +P + +RL +PGNVR+L Sbjct: 310 LSGMVLRLPPLRERRGDIPLLVQYFLKRRYPHRQPPI---DPSVWERLEAYRFPGNVREL 366 Query: 357 VNVIEQCVALTSSPVIS 373 +++++ L ++S Sbjct: 367 AHMVDRACMLYDGGMLS 383 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 173/445 (38%), Positives = 249/445 (55%), Gaps = 24/445 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LLL +DD + + L GY V GA+ L + RE DLV++D+R+ +DG+ L Sbjct: 3 LLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLTL 62 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALY---------QAID 118 F ++ QP V+++TA+ DAV+ ++G ++ KP + D L A Sbjct: 63 FRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAFR 122 Query: 119 DALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 ++ AP E ++ S M R+ ++ A SDV VL+ G++GTGK++ A+ IH Sbjct: 123 KGMQAGAPPGPEAG--GVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIH 180 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R +PF+ +NC A+PE L ESELFGH +GAFTGA R G F+AA+GGTLFLDE+G Sbjct: 181 ERSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVG 240 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++ A Q KLLR L+ P+GSNR + ++VR+I+AT+RDL A+ARG FR+DLYYRLN Sbjct: 241 ELAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLN 300 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+ L P L ER D+P+L L + A R V + L +PGNVR+L + Sbjct: 301 VIDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQH 360 Query: 359 VIEQCVALT-SSPVISDALV----------EQALEGENTALPTFVEARNQFELNYLRKLL 407 +E+ VAL P+ + L E A GE L EA QFE Y+R+ L Sbjct: 361 ALERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEG--LARLGEAVEQFEQQYIRRAL 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLL 432 + T G+ AA + G +R ++ L Sbjct: 419 EKTGGHRARAAALLGISRKSLWERL 443 >UniRef50_A8UVW5 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UVW5_9AQUI Length = 459 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 172/451 (38%), Positives = 258/451 (57%), Gaps = 35/451 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+V+DD L +L+ +L +G+ V + SG E R+L + ++ + D+++ Sbjct: 1 MTPMRGSILIVEDDESLNRLISKKLRGKGFRVDSVRSGEEAERLLKEKGYEVSLLDIKLL 60 Query: 61 EMDGMQLFAEIQKVQP--GMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 +M G+ L ++++ P I++T +G + AV A + G F+ KP + L +I+ Sbjct: 61 DMSGLDL---LRRMAPLTNTKFIVITGYGDVNTAVEAMKAGASDFIQKPFSFEILEVSIN 117 Query: 119 DALEQSAPATDERWREAIV----------TRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 A+++ + R ++ + T+SP + LE VA+SD++VLI G++GT Sbjct: 118 KAIKERRLEEENRALKSFLFDRDHEIIFDTKSPKFRKTLEMVENVARSDINVLIRGETGT 177 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKEI A+ IH S R KPFI ++C A+PE L ESELFGH RGA+TGA + GL + A Sbjct: 178 GKEIIARYIHRLSERREKPFIVVDCSAIPEHLFESELFGHERGAYTGATQRKLGLVELAN 237 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGTLFLDEIG++P +Q KLLR ++ R R +G R+I ++VRI+SAT+RDL + RGE Sbjct: 238 GGTLFLDEIGEIPLTMQSKLLRFVETRSFRRIGGLREIKVDVRIVSATNRDLNDMVRRGE 297 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FR DL YR+N V L+IP L ER EDIPLLA LR+ +R KP + ++ LM+ Sbjct: 298 FRSDLLYRINTVELEIPPLRERKEDIPLLAEVFLRKFKKRIKP-------ETVRLLMSYH 350 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALV-------EQALEGENTALPTFVEARNQFELN 401 WPGN+R+L N IE+ ++ + + L E LE + +P+ E EL Sbjct: 351 WPGNIRELRNAIERASLMSKGEYVDEHLCFPHPSDRELCLENVFSGMPSLKE----LELL 406 Query: 402 YLRKLLQITKGNVTHAARMAG-RNRTEFYKL 431 Y+ L G+V A G RT F KL Sbjct: 407 YI-DFLYRKLGSVDRVAEALGCSRRTVFRKL 436 >UniRef50_B8J7L3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8J7L3_ANAD2 Length = 484 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/450 (38%), Positives = 261/450 (58%), Gaps = 24/450 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+DDP LL +L L GY+V A A L++L D+V+SD+RM MDG L Sbjct: 18 VLVVEDDPRLLDILTRHLDRMGYAVRGAGGAAAALQLLEAAPADVVLSDVRMPGMDGRTL 77 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------- 120 AE++ P VI++TA GS+ DAV A Q G +S++ KP + + + +A Sbjct: 78 LAEVRARHPDAKVILMTAFGSVDDAVEAMQAGAYSYVVKPFKVETVAAVLRNAARELELH 137 Query: 121 --LEQSAPATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 ++ A ER+ + ++ S M + R A+ +VL+ G+SGTGKE+ A+AI Sbjct: 138 REVDGLRRAVAERFSADRLIGGSARMREVRRALREAAEVGATVLVTGRSGTGKEMAARAI 197 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H PR + PF+A+NC A+PE L ES +FGH RGAFTGAV ++ G + + GGTLFLDE+ Sbjct: 198 HYGGPRAAGPFVAVNCAAIPEPLFESAMFGHRRGAFTGAVESQAGFVEQSSGGTLFLDEV 257 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++P Q KLLRVLQE +V P+G+ R + +++R+++A +RDL + +A+G FREDL+YRL Sbjct: 258 AEIPPAQQAKLLRVLQEGEVTPVGAARPVKVDLRVVAAANRDLEQMVAKGAFREDLFYRL 317 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ +++P LAER ED+P LA HLL A H F+ +A+ L WPGNVR+L Sbjct: 318 NVLRIELPTLAERAEDVPALAEHLLLDIARGHGVPALGFTPEALAALERHRWPGNVRELR 377 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA----------RNQFELNYLRKLL 407 N +E+ + I A + A+ PT EA + E ++ K+L Sbjct: 378 NAVERALLAARGRRIDAADLPAAV----VRAPTGAEAVPPPGEGGLTLAEVERAHVEKVL 433 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + N + AAR+ G +R + + R+ L Sbjct: 434 AMVGWNRSLAARLLGIDRRTLFTKIQRYGL 463 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 235/381 (61%), Gaps = 14/381 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD GL+ L + + Y V++ SG L + RE DL++ D +M +G++ Sbjct: 7 ILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLET 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ---- 123 EI+++Q P+I++TA+G++ A+ A + G + +L KP D++ L + DALE Sbjct: 67 LKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRLM 126 Query: 124 ----SAPA---TDERWREAIVTRSPLMLRLLEQARLVAQ---SDVSVLINGQSGTGKEIF 173 S PA T R + + R+ E +L+ Q DV+VLI G+SGTGKE+ Sbjct: 127 KEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELV 186 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+++ S R +KPF+ +NC A+PE L ESELFG+ RGAFTGA G F+ GGTLF Sbjct: 187 ARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHGGTLF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 DEI +MP Q KLLR LQ ++ +G+ + + ++VR++ AT+++L +A+ +G FREDL Sbjct: 247 FDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFREDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 Y+RL ++S+ +P L ER EDIP L ++ L + E +K +R A+ +L + +WPGNV Sbjct: 307 YWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAWPGNV 366 Query: 354 RQLVNVIEQCVALTSSPVISD 374 R+L N + + V L+S VI + Sbjct: 367 RELENTVRRAVVLSSGDVIRE 387 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/374 (41%), Positives = 230/374 (61%), Gaps = 16/374 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+V+D+P L L +++ Y TA G E L + + +V++DL+M MDGMQL Sbjct: 27 VLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRMDGMQL 86 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-----LE 122 + ++ VI+LTA GSI AV A + G F +L KPVD L + + ++ Sbjct: 87 LERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVSRQLEMQ 146 Query: 123 QSAPATDERWREA------IVTRSPL--MLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + AT R R + T P+ + L+E+ VA ++VSVLI G+SGTGKE+ A Sbjct: 147 REMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIER---VAPTNVSVLITGESGTGKELVA 203 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H SPR +KPF+A+NC A+PE L+ESE+FGH +GAFTGA+ R G F+ AE GTL L Sbjct: 204 KTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTLLL 263 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG+MP Q KLLRVL++R+ R LGS + I+VR+++AT+++ +A+A GE R DLY Sbjct: 264 DEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGDLY 323 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV ++ +P L E EDIP +A ++ +H + + RL++ WPGNVR Sbjct: 324 YRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGNVR 383 Query: 355 QLVNVIEQCVALTS 368 +L N +E+ V L + Sbjct: 384 ELRNTMERAVILCT 397 >UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Deltaproteobacteria RepID=Q2INT5_ANADE Length = 476 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 179/456 (39%), Positives = 273/456 (59%), Gaps = 27/456 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ L+ LG EG+ V A SGA L VL RE+ +V++DL M M G +L Sbjct: 5 VLVVDDESPNLESLGKIFEREGWRVALAGSGAAALEVLRRERAAVVVTDLMMPGMSGDEL 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++ V P V+++TA+G++ AVAA +QG + F+TKPV + A+ +A+ ALE+++ Sbjct: 65 LRAVKTVSPESEVVVMTAYGTVEAAVAAMKQGAYDFITKPVKRHAIVKAVRQALERASLV 124 Query: 128 TDERWREA------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + R +A ++ +P +LE R A + +VL+ G+SGTGKE+ A+ Sbjct: 125 AENRALKARLAELAPGGAGALLGDAPAFRAVLEILRQAAPTQATVLLLGESGTGKELAAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H+ SPR + PF+ I+C A+PE LLESELFGH +GAFTGAV+ ++G F+ A GGTLFLD Sbjct: 185 LVHDLSPRAAGPFVPIHCAAIPETLLESELFGHEKGAFTGAVARKDGRFERAHGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+M +QVKLLR LQ+ + +G N + ++VR+++AT++DL + G FREDL+Y Sbjct: 245 EIGEMSPAVQVKLLRFLQDGVLERVGGNEPVRVDVRVVAATNKDLAAEVKAGRFREDLFY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL+VV +++P L ER ED+PLLA LR+ AER+ + F+ AM L +WPGNVR+ Sbjct: 305 RLDVVRVRLPPLRERREDVPLLAMAFLRRMAERNGKPISGFTPGAMAALERYAWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---------------ARNQFEL 400 L + IE+ V LT + V+ + +A+ A + ++ E Sbjct: 365 LQHAIERAVVLTRADVVEVGDLPEAIRAAGPAAEAAPPAGPAGAPVLTVPLGTSMDEIER 424 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 +R+ L+ T G+ AA++ G Y+ L R E Sbjct: 425 RVIRETLRHTHGDKNLAAQLLGIAARTIYRKLDRDE 460 >UniRef50_Q253B4 Nitrogen regulation two-component transcription regulatory protein n=15 Tax=Chlamydiales RepID=Q253B4_CHLFF Length = 386 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/378 (39%), Positives = 231/378 (61%), Gaps = 8/378 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+P L L L S G+S TA++ G + EK DL+ISD+ M + G+ + Sbjct: 6 VLIVDDEPLLRDFLSELLLSRGFSPFTADNVKIGCHKIKTEKYDLIISDMNMPDGTGIDI 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++ P PV+++TA+G+I +AV A G F++LTKP +AL+ I A E Sbjct: 66 IKAAREHSPLTPVLVITAYGTIENAVKAMYHGAFNYLTKPFSSEALFAFIAKAEELQNLV 125 Query: 128 TDERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + ++ ++ SP M LL +AR A S ++ I+G+SG GKE+ + IH Sbjct: 126 NENLLLKSQISSESHPLIAESPAMKDLLSKARKAADSAANIFIHGESGCGKEVLSFFIHR 185 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR S+P+I +NC A+PE LLESE FGH +GAFTGA + + G F+ A GTL LDEI + Sbjct: 186 NSPRASQPYIKVNCAAIPETLLESEFFGHEKGAFTGATAKKAGRFELAHTGTLLLDEITE 245 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P LQ KLLR +QE++ LG + + ++VRI++ ++RDL +A+++ FR+DL+YRLNV Sbjct: 246 VPIHLQAKLLRAIQEKEFEHLGGTKTLSVDVRILATSNRDLKEAVSQKIFRQDLFYRLNV 305 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L +P L ER EDI L+ + L + + ++ S A L+ SWPGN+R+L NV Sbjct: 306 IPLYLPPLRERKEDILPLSQYFLEKFCRLNNRPIKTLSASAKAALLDYSWPGNIRELSNV 365 Query: 360 IEQCVALTSSPVISDALV 377 +E+ V L S ++D ++ Sbjct: 366 LERVVILESPTHLTDTML 383 >UniRef50_C8PZ92 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ92_9GAMM Length = 568 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/377 (40%), Positives = 232/377 (61%), Gaps = 18/377 (4%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L++DD+ L +L+ + L G A A G+ L D ++DL++ + G+ + Sbjct: 5 LIIDDEVDLCRLMQMTLKKMGIETKVAYDYATGISHLQAYSFDFCLTDLKLPDGTGLDIV 64 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPAT 128 I K PV ++TAHGS+ A+ A + G F F+ KP++ L Q +++AL+ + A Sbjct: 65 KFISKNYAKTPVAVITAHGSMDLAIEALKLGAFDFVNKPLELSRLRQLVENALKVAENAN 124 Query: 129 DERWREAIVTRSPLMLRLLEQARLVAQ----------SDVSVLINGQSGTGKEIFAQAIH 178 +E P RL+ + +AQ S V + G+SGTGKE+ A+ IH Sbjct: 125 KLNCKEVY---DPFSNRLIGHSNAIAQLKTTIQKLARSQAPVFLWGESGTGKEVVAKLIH 181 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 + SPR S F+ +NCGA+P +L+ESE FGH +G+FTGA +++EGLFQ A GGTLFLDE+ Sbjct: 182 DLSPRCSANFVPVNCGAIPSELMESEFFGHKKGSFTGATADKEGLFQQANGGTLFLDEVA 241 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 D+P +QVKLLR +QE+K+RP+GS ++I ++VR++SATH++L K + GEFR+DLYYR+N Sbjct: 242 DLPISMQVKLLRAIQEKKIRPIGSTQEIAVDVRLLSATHKNLAKLVETGEFRQDLYYRIN 301 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERH---KPFVRAFSTDAMKRLMTASWPGNVRQ 355 V+ +K+P+L ER +DI LLANH + A+ +P S +A +L + GNVR+ Sbjct: 302 VIEVKLPSLNERRDDILLLANHFISLIADDWGLAQPLT--LSNEAAVQLTNHRFAGNVRE 359 Query: 356 LVNVIEQCVALTSSPVI 372 L N++E+ + L VI Sbjct: 360 LRNILERAITLADDNVI 376 >UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Anaeromyxobacter RepID=Q2IK30_ANADE Length = 466 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 179/455 (39%), Positives = 254/455 (55%), Gaps = 29/455 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +LLVDD+P + L + G+ V A S +E L L E+ D++++D M EMDG+ Sbjct: 2 SRVLLVDDEPSVRAALKELVQGRGWEPVLACSASEALEQL--ERADVLVTDFSMPEMDGL 59 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L +++ +PVI+LTAHGS AV A + G + ++ KP D D L AI ALE A Sbjct: 60 ALLQAVRERDEWLPVILLTAHGSERLAVRAMKAGAYEYVPKPFDVDELALAIGRALE--A 117 Query: 126 PATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 +R R+ +V S M ++L VA +++VL+ G++GTGKE+ Sbjct: 118 RLLRQRNRQLTVEHAIGRRLVFESANMRQVLAATARVAAREITVLVRGETGTGKELIGTL 177 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R + P + NC A+P +L E+ELFGH RGAFTGAV R G F A+GGTL LDE Sbjct: 178 LHALSKRAAGPLVRFNCSAIPAELAEAELFGHVRGAFTGAVQARPGFFAQADGGTLVLDE 237 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P +Q KLLR LQE +++P+GS R ++VRI++ THRDL + G FREDLYYR Sbjct: 238 VGELPLGIQAKLLRTLQEGEIQPVGSGRVERVDVRIVACTHRDLRADVQEGRFREDLYYR 297 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L VV L +P L +R EDIP LA+ + AER + ++RL+ A WPGNVRQL Sbjct: 298 LAVVELTVPPLRDRREDIPALAHEFALRYAERFGSEDVRLAPALVERLVKADWPGNVRQL 357 Query: 357 VNVIEQCVALTSSPVISDALVEQAL--------------EGENTALPTFVEARNQFELNY 402 NV+ + VAL+ I E EGE T T ++ E Sbjct: 358 ENVVARMVALSGGGEIGPDAFEATGAPAGGAGRPAAPPSEGEGTR--TLRAQLDELERAV 415 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + + +GN + AAR G +R + L R+EL Sbjct: 416 IARTMVAVRGNQSEAARRLGISRNTLTERLRRYEL 450 >UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Y64_CYTH3 Length = 436 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 155/434 (35%), Positives = 261/434 (60%), Gaps = 4/434 (0%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+++DD L +L L G+ V++ + G GL ++ + +D V+ DLR+ + +G+++ Sbjct: 4 VLIIEDDISLRTILEKFLQKNGFEVISTDRGKAGLEIITSQHIDFVLLDLRLPDSNGIEI 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 I+K+ + VI++T + + AV A + G +LTKP++ + L + ++ A Sbjct: 64 LQSIKKLHSHVSVIMMTFYDDVRSAVTAIKSGARDYLTKPINPEELLSLLK-PIQAVKKA 122 Query: 128 TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKP 187 + E + ++ +LE ARLVA + +SVLI G+SGTGKE A+ IH S R K Sbjct: 123 VEINKSEFVQGKNEKFAGVLEHARLVAPTMLSVLITGESGTGKEELAKYIHTNSQRKQKD 182 Query: 188 FIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVK 247 FI ++CG++ E+L SE FGH +G+FTGAV ++ GL ++A GGTLFLDE+G++ Q+K Sbjct: 183 FITVDCGSISEELFGSEFFGHMKGSFTGAVYDKPGLLESANGGTLFLDELGNLTYENQIK 242 Query: 248 LLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 LLRVLQE+KV+ +GSN++ID+++R+I+AT+ ++ ++ + +FREDLY+RLN + +PAL Sbjct: 243 LLRVLQEKKVKRIGSNKEIDLDIRLIAATNEEIVLSVQKEKFREDLYHRLNEFKIHVPAL 302 Query: 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 ER ED+ L NH + ++ V+ S + L ++PGN+R+L N++ + V L Sbjct: 303 RERPEDLNELINHFIAKSNSEFGKHVKQLSESGLAVLAQYAFPGNIRELKNIVRRAVLLA 362 Query: 368 SSPVI-SDALVEQALEGENTALPT--FVEARNQFELNYLRKLLQITKGNVTHAARMAGRN 424 +S I D L ++ A+ T + Q E + + K L+ T N + AAR+ + Sbjct: 363 TSETIEKDQLPQEIFNTRTLAVDTVDLKSLQEQQERDAIIKALKKTGNNKSEAARILNID 422 Query: 425 RTEFYKLLSRHELD 438 R Y L ++L+ Sbjct: 423 RKTLYNKLKLYQLE 436 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 259/460 (56%), Gaps = 29/460 (6%) Query: 6 AHLLLVDDDPGL-LKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDD+ G+ L G+ L EGY V AE+G EGL++ DL+ D+ + MDG Sbjct: 3 ARVLIVDDEDGIRFSLRGI-LEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-- 122 +++ ++ +PVI+++ HG+I AV A ++G + F+ KP+ + + + + ALE Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 123 ---QSAPATDERWREA----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + A R ++ + S ++ L Q VA +D VLI G++GTGKEI A+ Sbjct: 122 RLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAAR 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +IH +S R KP +A+NC A+PE+L+ESELFGH +GAFTGA + + G F+ A GTLFLD Sbjct: 182 SIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI DM Q K+LR+LQE+ +G ++ + ++VR+I+AT++ L +A G FREDLYY Sbjct: 242 EIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V+ L +P L +R +D+ LL + + H F+ DA L+ WPGNVR+ Sbjct: 302 RLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVRE 361 Query: 356 LVNVIEQCVALTSSPVISDALV--EQALEGEN------TALPT----------FVEARNQ 397 L N +E+ + + S ++ A++ E G TA P+ F AR Sbjct: 362 LKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAARTA 421 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 FE +L LQ GN+T A G R+ Y+ L + + Sbjct: 422 FEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNI 461 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/448 (39%), Positives = 261/448 (58%), Gaps = 20/448 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +LLV+DD ++L L G V A G E L L + DL++SD +M Sbjct: 1 MGAAGARVLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQ 60 Query: 61 EMDGMQLFAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 MDG L A + + QPG P V+++TA G+I +AV A Q G +L KP L + Sbjct: 61 PMDGYGLLAAL-RAQPGHPPVVMMTAWGTIDEAVRALQNGAVDYLVKPFAMQELLTKLQR 119 Query: 120 ALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 E+ P + + SP+ML L +AR VAQ++ SVL+ G+SG GKE+ A+ IH Sbjct: 120 H-ERLQPGAELE----PLAHSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHR 174 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R +PF+A+NC A+PE LLE+ LFGH +GAFTGA + G F+ A+GGTL LDE+ + Sbjct: 175 ESNRAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTE 234 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M PLQ KLLRVLQER++ +G R I ++VR+I+ ++RDL +A++ G+FREDLYYRL V Sbjct: 235 MALPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQV 294 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L +P L +R EDI LA LL + ER ++ +A L++ WPGNVR+L N Sbjct: 295 IPLCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSYPWPGNVRELDNA 354 Query: 360 IEQCVALTSSPVI-SDAL---VEQALE---GENTALPTFVEARNQFELNYLRKLLQITKG 412 +++ ++ VI SD L + L+ E ++ P + R++ E + +L+ +G Sbjct: 355 LQRAAIFSADTVIRSDDLGLEIRGTLDDARSEGSSRPILEDVRSRQEQETIVSVLRECRG 414 Query: 413 NVTHAARMAG------RNRTEFYKLLSR 434 + AAR G R++ + Y+ + R Sbjct: 415 SRNEAARRLGISPRTLRHKLQRYREMGR 442 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 175/441 (39%), Positives = 253/441 (57%), Gaps = 16/441 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM-DEMDGM 65 HLL+VDD+P + L L + TA S E L + LVI+D++M + DG+ Sbjct: 39 HLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDRDGL 98 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + I++ PG I++TA+G++ AV A ++G F F+ KPVD + + Q + A E Sbjct: 99 ELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAEHHQ 158 Query: 126 PATD-----ERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + E+ EA + L+++ R VA +D +VL+ G+SGTGKE+ A+ Sbjct: 159 LRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKELIAR 218 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H+ S RN+ PF+A+N GALPE LLESELFGH +G+FTGA + G F+ A GGTLFLD Sbjct: 219 AVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGTLFLD 278 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI ++PA QV LLRVL+ + +G + N RI+SAT++ K + G FREDLYY Sbjct: 279 EITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFREDLYY 338 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLN++ +++P L R EDIPLL H L++ RH+ ++ +AM+ L + WPGNVRQ Sbjct: 339 RLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPGNVRQ 398 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGEN----TALPTFVEARNQFELNYLRKLLQITK 411 L N IE+ V + I A + L +N TAL T VE E + L K Sbjct: 399 LRNHIERLVVTVPAETILAADLPCELHQQNAAQSTALKTLVEITESAEKTGIELALSAKK 458 Query: 412 GNVTHAARMAGRN-RTEFYKL 431 + A+ G + RT YK+ Sbjct: 459 SHREQTAKALGISVRTLHYKM 479 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 176/458 (38%), Positives = 262/458 (57%), Gaps = 18/458 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S K L+++DD +++ R + Y V S A+ + + R D +++DLRM Sbjct: 3 SAKKPSLMVIDDLDSARQMMK-RTLARSYDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG++ Q P +PVI++TA ++ AV A + G F +L KP + + L + A+ Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 122 EQS-APATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + R R A IV +S M L+ +A SDV +LI G+SGTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A H S R P++A+N A+PE L ESELFGH +GAFTGA R G F AEGGT Sbjct: 182 LLARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G +P LQ KLLRVLQ+ + P+GS + NVR+++AT+ DL + + G+FRE Sbjct: 242 LFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFRE 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAER-HKPFVRAFSTDAMKRLMTASWP 350 DL++RL VV L++P L ER EDIPLL HL+++ A R +P ++ +AM+ L+ WP Sbjct: 302 DLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQP-DAEAMRALLDHPWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA-----LVEQALEGENTALPTFVEARNQFELNYLRK 405 GN+R+L + IE+ + L I+ A L A + AR+ +E +L Sbjct: 361 GNIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLED 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 +L+ G V AA ++G +R+ FY+ L+RH L D K Sbjct: 421 VLREAGGQVARAAELSGLHRSTFYEKLARHGLADKDAK 458 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 157/377 (41%), Positives = 228/377 (60%), Gaps = 15/377 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK--VDLVISDLRMDEMDG 64 H+LLVDD+ L L T G + + + + + VL +E DLVI+D +M +MDG Sbjct: 10 HILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMPDMDG 69 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL--- 121 ++L A I++ P + VI++TAH ++ AV A Q G ++ KP + L + + AL Sbjct: 70 LELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAALARR 129 Query: 122 --------EQSAPATDERWREAI--VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 +Q A + R R I V P++ RL E VA + V I G+SGTGKE Sbjct: 130 REQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESGTGKE 189 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 I A+ IH S R PF+AINC LP +L+ES LFGH +GAFTGA+ + G F+ AEGGT Sbjct: 190 ILARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERAEGGT 249 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDEI ++ +Q KLLRVLQE++++ +GS I+VR+I+ ++R+L +A+A+GEFRE Sbjct: 250 LLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKGEFRE 309 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL+V L +P L ER D+PLL H +++ E + + S M+R M WPG Sbjct: 310 DLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQYPWPG 369 Query: 352 NVRQLVNVIEQCVALTS 368 NVRQL N +++ V L++ Sbjct: 370 NVRQLENYVQRGVLLSA 386 >UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=cellular organisms RepID=A1WBW7_ACISJ Length = 502 Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 163/386 (42%), Positives = 236/386 (61%), Gaps = 19/386 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ A +L+VDD+P L L L L EGY V TA S + + L +K D+VI+D+R+ Sbjct: 1 MNASTASILVVDDEPDLRTLYELTLLREGYRVETAASVDDARQQLQTQKFDVVITDMRLP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM L +++ Q +++TA+GS +AV A + G F +LTKPVD + A Sbjct: 61 DGFGMDLLHDLRSQQRRERCVVMTAYGSAENAVEALRAGAFDYLTKPVDLKQFRAVVASA 120 Query: 121 LEQ-----SAPATDE-------RWREA-------IVTRSPLMLRLLEQARLVAQSDVSVL 161 ++ +AP +W + ++ S M + ++ VA+S VL Sbjct: 121 VQGIGAVLAAPKATRPGARNVTQWPDMQDPVLDRLIGDSEAMRNVKQRIAKVARSMAPVL 180 Query: 162 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNRE 221 + G+SGTGKE+ A+A+H +S R+ P IA+NCGA+PE LLE+E FG +G++TG+ +RE Sbjct: 181 VRGESGTGKELVARALHASSQRSEGPLIAVNCGAIPENLLEAEFFGARKGSYTGSTHDRE 240 Query: 222 GLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLP 281 G FQAA GGTLFLDEIGD+P P+Q KLLR +QER VRPLGS ++ ++VRI+SATHRDL Sbjct: 241 GYFQAARGGTLFLDEIGDLPLPMQSKLLRAIQERNVRPLGSTQEEAVDVRIVSATHRDLA 300 Query: 282 KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAM 341 + G FR+DLYYRLNV+ L IP L ER ED+P L LL + + V + +A+ Sbjct: 301 ADVQAGRFRQDLYYRLNVIELLIPPLRERREDLPALCEALLARIEQESGVAVPHLTEEAL 360 Query: 342 KRLMTASWPGNVRQLVNVIEQCVALT 367 + + GNVR+L N++ + VAL+ Sbjct: 361 QCIAQHPLTGNVRELENLLHRAVALS 386 >UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UVC1_RHOBA Length = 498 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/383 (42%), Positives = 234/383 (61%), Gaps = 23/383 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L DD+P L KL+G L GY V G + VL++E +D ++ DL M M G++ Sbjct: 51 HILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMSGIE 110 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV---DKDALYQAIDDALEQ 123 + A ++++P + +I+T + S A+ A + G F +L KP + AL + + E Sbjct: 111 VIARAREIRPEIEAVIMTGNPSQETAIEALRHGTFDYLMKPCRLAEISALMGRVSERREW 170 Query: 124 S--APATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + A R + A ++ + M + + VA ++ +VLI G++G GKE+ A+A Sbjct: 171 NRLVAALRHRLQRAEGDSDLIGENQSMHAVRKLIAKVAPTESTVLIRGETGCGKELVARA 230 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 I + S R+ +PF+AINCGALPE L+ESELFGH +GAFTGA S R GLF+ A GGTLFLDE Sbjct: 231 IADESLRSEQPFVAINCGALPETLIESELFGHVKGAFTGADSGRMGLFEVASGGTLFLDE 290 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P +Q KLLRVL+ +R LG N+ I ++VR++ ATHRDL K + G FREDL +R Sbjct: 291 VGELPLAVQAKLLRVLETGDIRRLGDNQSIKVDVRVVCATHRDLEKMVTEGTFREDLMFR 350 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP---FVRAFSTDAMKRLMTASWPGNV 353 +N L++PAL +R +D+P LA HLLR RH+ + F+ AM L + WPGNV Sbjct: 351 INTFELRLPALRDRIDDLPALAEHLLR----RHRADGTSGQLFTEAAMAELQSHQWPGNV 406 Query: 354 RQLVNVIEQCVALTSSPVISDAL 376 R+L NVIE + V+ DAL Sbjct: 407 RELANVIEH------ASVLCDAL 423 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 151/383 (39%), Positives = 240/383 (62%), Gaps = 16/383 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+ DD + + + + L+ G+ V+ GAE + ++ D+V++DLRM +DG+ Sbjct: 29 ARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVDGI 88 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--- 122 ++ ++++ P V++++AHG+I AV A ++G F+ KP D L ++ ++E Sbjct: 89 EVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEIAR 148 Query: 123 ----------QSAPATDERWRE---AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 ++ ++ R+ +V S M R+L+Q R VA + +VL+ G+SGTG Sbjct: 149 ERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTG 208 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH+ASPR +PF++I+C A+PE LLESELFGH +GAFTGA+ + G F+ A G Sbjct: 209 KELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANG 268 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDE+G++P +QVKLLRVLQER+ +G ++++VR++SAT+R+L + + G F Sbjct: 269 GTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRF 328 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVV + +P L +R D+ LA + + A R V + +A++ L W Sbjct: 329 REDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHRW 388 Query: 350 PGNVRQLVNVIEQCVALTSSPVI 372 PGNVR+L NVIEQ + ++ Sbjct: 389 PGNVRELENVIEQALVFAEGELV 411 >UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC n=8 Tax=cellular organisms RepID=C0YJU0_9FLAO Length = 394 Score = 293 bits (751), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 230/380 (60%), Gaps = 16/380 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSE--GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+V+D+ + +L L+ E Y V AE G EG + + +E LVISD++M ++ G Sbjct: 4 ILIVEDEKAISGVLHSILSDELTDYEFVIAEDGLEGYKQVEKEDFALVISDIKMPKLSGT 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + ++P I+++ H I AV+ ++G + F++KP+D + L ++ +AL + Sbjct: 64 ELLKQSLALKPETTFIMISGHADIDSAVSCLKEGAYDFISKPIDINRLITSVKNALVKET 123 Query: 126 PATDERWREA--------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + + ++ SP + ++ + VA SD VLI G +G GKE Sbjct: 124 LKKENKNLQTENKTLKKKVSKKYQMIGTSPALQKIQDMIEKVAASDARVLITGPNGAGKE 183 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A AIHN S R P + +NC A+P +L+ESELFGH +G+FTGA+ +++G F+ A GGT Sbjct: 184 LVAHAIHNQSERARGPMVEVNCAAIPSELIESELFGHVKGSFTGAIKDKQGKFEQANGGT 243 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGDM Q K+LR LQE KV P+GS+++I ++VR+I+AT++++ K + G+FRE Sbjct: 244 IFLDEIGDMSLIAQAKVLRALQESKVSPVGSDKEIKVDVRVIAATNKNMQKEIEEGKFRE 303 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL+V+ + +P L ER EDI LL H A+ H + F A+ L SW G Sbjct: 304 DLYHRLSVIEIYVPPLDERKEDIKLLVEHFAGMIADEHGTAAKKFDDKAIDALKALSWTG 363 Query: 352 NVRQLVNVIEQCVALTSSPV 371 N+R+L NV+E+ + L + V Sbjct: 364 NIRELRNVVERLIILGGNTV 383 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 293 bits (751), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 174/472 (36%), Positives = 269/472 (56%), Gaps = 42/472 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+ DD+ + +L L +G++V A+ G + L ++ DL I D++M M G+ Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD---KDALYQAIDDALEQ 123 L I++++ + V+I+TA S+ +AV A ++G + ++TKP D DA+ + + A E Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREI 124 Query: 124 SAPAT------DERWR--EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + E ++ + I+ S M + + VA SD+++LI G+SGTGKE+ A+ Sbjct: 125 AGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R KPF+AINC A+P LLESELFG RGAFTGA ++G F+ A GT+FLD Sbjct: 185 AIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP LQ K+LRVLQE +V +G + I +NVRI++AT+++L + + + EFREDLYY Sbjct: 245 EIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + + L ER +DIP L + L + + + +AM L SWPGNVR+ Sbjct: 305 RLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALV--------EQALEGENTALPTFVEAR------------ 395 L N I++ V L++ P++++A E A+ ++ +L VEA+ Sbjct: 365 LENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLD 424 Query: 396 ---------NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E +R +L+ T+ N AA + G NR K + H+L+ Sbjct: 425 KSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKI--HDLE 474 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 293 bits (751), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 173/441 (39%), Positives = 254/441 (57%), Gaps = 17/441 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L++DDD + +LL L Y V + GA +NR + ++V+ D ++ + G+ Sbjct: 3 ANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L I+K P VI+LT H + AV A ++G F F KP D ++L I ALE + Sbjct: 63 DLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIRS 122 Query: 126 PATDERWREAIVT-----RSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 REA+ T + +M ++ R VA SDVS+LI G+SGTGKE+ A IH++ Sbjct: 123 ------LREAVSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIHSS 176 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R S P I INC ALP +L+ESELFG +GAFTGA S+REGLF+ AEGGTL LDE+ +M Sbjct: 177 SHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELSEM 236 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P Q KLLRVLQE++VRP+G + RII+AT+R +A+ G+ REDL+YR++ V Sbjct: 237 PIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRISAV 296 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 S+ +P L ER EDI LA L++ + + + F+ +A +RL + WPGNVRQL N + Sbjct: 297 SVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQNEV 356 Query: 361 EQCVALTSSPVISD---ALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 ++ V L ++ ++ A E T +E E N + ++L+ T GN Sbjct: 357 QRAVLLCEGKLVDAPDLSITAPANESTGDTSYTLLEG---VERNTIVQMLKETGGNKLET 413 Query: 418 ARMAGRNRTEFYKLLSRHELD 438 A+ G R Y + + ++ Sbjct: 414 AKRLGIGRQTLYNKIKAYGIE 434 >UniRef50_A7HCY5 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A7HCY5_ANADF Length = 446 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 175/437 (40%), Positives = 244/437 (55%), Gaps = 12/437 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+P L K++ L +G+ V A G + L L + D+V++DLRM ++DG+ + Sbjct: 4 ILVVDDEPKLGKVVAQMLELDGHEVERAAGGRDALVRLAASRFDVVVTDLRMPDVDGLAV 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + V V+++TA+ + AV A + G ++TKP D L + Q Sbjct: 64 LRAARAVPQPPEVVVMTAYATAESAVEAMKAGAVDYVTKPFSMDELRLRVRRLAAQRGAE 123 Query: 128 TDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASP 182 E R +V SP M L+ AR VA +D +VL+ G+SGTGK A+ IH Sbjct: 124 VREARLVARLTPELVAESPAMRAALQAARQVAATDATVLLLGESGTGKSQLARFIHYQGR 183 Query: 183 RNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA 242 R + P + ++C ALPE LLE ELFGH +GAFTGA + G AA+ GTLFLDEIG++ Sbjct: 184 RAAGPLVEVHCAALPETLLEGELFGHEKGAFTGATQRKAGHLAAADRGTLFLDEIGEITP 243 Query: 243 PLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSL 302 QVKLLR LQ+R+ PLG+ + ++VR++SAT+RDL A+A G FRED YYRLNV ++ Sbjct: 244 ATQVKLLRFLQDRRFVPLGATEERSVDVRVVSATNRDLAAAVAEGTFREDFYYRLNVFAI 303 Query: 303 KIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 +P L ER ED+ LA L A R P + A +RL+ WPGNVR+L N +E+ Sbjct: 304 PVPPLRERPEDVLPLAERFL---AARGLPPSK-LGASARERLLAHRWPGNVRELENALER 359 Query: 363 CVALTSSPVI-SDALVEQALEGENTALPTFVE--ARNQFELNYLRKLLQITKGNVTHAAR 419 + L I +D L + A VE + + FE L L+ GN THAAR Sbjct: 360 ALILAGEEEIRADQLASGGAQRGRRATDLLVEGFSLDAFERELLHAALERAGGNKTHAAR 419 Query: 420 MAGRNRTEFYKLLSRHE 436 M G R Y LL+ HE Sbjct: 420 MLGITRRRLYSLLASHE 436 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 146/378 (38%), Positives = 228/378 (60%), Gaps = 11/378 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGL-RVLNREKVDLVISDLRMDEMDG 64 + +L+VDDD + LG L S GY + TA SG EG+ ++ K DL++ D+RM + G Sbjct: 8 STILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISG 67 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++ ++ + ++++TA G+ A+ A + G + ++ KP D D + + + A+ S Sbjct: 68 IETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSS 127 Query: 125 ----------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + ++E IV SP M + + VA SD +VL+ G+SGTGKE+ A Sbjct: 128 QDLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIA 187 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + I+ S R+ PF+A+NC A+P+ L+ESELFGH +G+FTGA + R G F+ + GT+FL Sbjct: 188 KCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFL 247 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM Q K+LRVLQE +++ +G I ++VR+I+AT++DL K + EFREDLY Sbjct: 248 DEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLY 307 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV +++P+L ER ED+P + + +L+ + K V S DA+ L+ WPGNVR Sbjct: 308 YRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVR 367 Query: 355 QLVNVIEQCVALTSSPVI 372 +L NV+ + + I Sbjct: 368 ELGNVVYRSAVVAQGDAI 385 >UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0D3_9PLAN Length = 462 Score = 293 bits (750), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 174/434 (40%), Positives = 250/434 (57%), Gaps = 26/434 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMDEMDGMQ 66 L++ + PG L LT + +T E L V E+ VDLV+ DL + D +Q Sbjct: 8 LIIENTTPGRAVLSDF-LTQHNFHSITVSQ--EQLAVHQIEQSVDLVLIDLDQGDQDALQ 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS-- 124 + +P P I++++ +I AVAA +QG +L KPV+ L Q++ + + Sbjct: 65 QLRYWKNHKPETPCILVSSSDNIDTAVAAMKQGAADYLRKPVNSQKLIQSVITCMRSTRN 124 Query: 125 -APATD-------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 APA +R E IV +S M + E AR VAQ+D +VLI G+SGTGKE+ A+A Sbjct: 125 AAPAVSASQHRPSQRGFENIVGQSGAMQEIFEDARRVAQTDSTVLITGESGTGKELIAEA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR ++PF+ +N A+PE L+ESELFGH +G+FTGA +R G F+AA GTLF+DE Sbjct: 185 IHRNSPRAAEPFVTVNMAAVPEHLVESELFGHTKGSFTGATESRRGRFEAAHHGTLFIDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD Q KLLRVL+ + P+GSN+D +NVR+++AT L K + +G FREDLYYR Sbjct: 245 IGDFKLESQAKLLRVLENHTITPIGSNQDRHVNVRVVAATSHHLEKLVEKGRFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAA---ERHKPFVRAFSTDAMKRLMTASWPGNV 353 LNV++LK+P L ER EDI LL + + Q +R +P S + + L+ +WPGNV Sbjct: 305 LNVINLKLPPLRERNEDIALLVDSFMNQICQQIQRERP---ELSAELHQYLVNHTWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVIS-DALVEQALEGENT----ALPTFVEARNQFELNYLRKLLQ 408 RQL N +E V L+ S ++ D L + GE +P + + E +++ L Sbjct: 362 RQLRNCLESMVVLSKSGRLTLDDLPDMLRNGEGVHDGIVIPEGIRLE-ELERTAIQQTLS 420 Query: 409 ITKGNVTHAARMAG 422 GN TH+A+ G Sbjct: 421 RNHGNRTHSAKSLG 434 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 173/464 (37%), Positives = 259/464 (55%), Gaps = 37/464 (7%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 H +L+VDD+ LL RL +GY+ + A G +++ E + +++ DL+M M Sbjct: 2 HTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ ++ P + +I++T HG+I A+ A ++G + +LTKP + + L I A+E Sbjct: 62 DGLSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVE 121 Query: 123 -QSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 Q +++ REA IV SP + +L A+ VA +D VL+ G+SGTGK+ Sbjct: 122 KQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ I+ S R SK F+ IN GA+PE +LESELFGH +GAFTGA + ++GL + A GT Sbjct: 182 VIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+GD+P PLQVKLLR L+ + R +GS ++VRII+AT+ DL K + G FR Sbjct: 242 LFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRS 301 Query: 292 DLYYRLNVVSLKIPALAERTEDI-PLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DLY+RL+V+ + IP L +R+EDI PL A L R +R P V+ S A L+ S+P Sbjct: 302 DLYFRLHVMDITIPPLTQRSEDILPLSAFFLNR--LKRKYP-VKPLSVKAQAALLAYSFP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISD-----------------ALVEQALEGENTALPTFVE 393 GNVR+L ++IE+ V L I D L A GE A Sbjct: 359 GNVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAF----- 413 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E +++ +L +++ N T A G + Y+ + +EL Sbjct: 414 LLKNVEREHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYEL 457 >UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator Nla28 n=3 Tax=Cystobacterineae RepID=Q1DD46_MYXXD Length = 447 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 184/453 (40%), Positives = 263/453 (58%), Gaps = 28/453 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE-MDG 64 A +L+VDDDP LL RL +V A + DLV++D+ M E DG Sbjct: 4 ARILVVDDDPQARDLL-QRLLGPLGAVTQAPDPRRATERIAEGAFDLVLTDMAMPEPGDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ E++ P PV+++TA G+I A+ + QQG F +L KP D DA+ + ALEQ Sbjct: 63 LKVLHEVKAQLPDTPVVVVTAFGNIEGALDSIQQGAFDYLAKPFDVDAILRVARRALEQK 122 Query: 125 APATD--------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ER +V RSP +L + + A S+V VLI G++GTGKE+ A+A Sbjct: 123 RLVEENRSLRQQVERGSLMLVGRSPALLEVYKHVARAAASNVPVLITGETGTGKEMVARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR + PFI ++CGA+ E L+ESELFGHA+G+FTGA R G+F+ A GGTLFLDE Sbjct: 183 LHKRSPRMNGPFIPVDCGAITESLMESELFGHAKGSFTGASGARRGVFEEASGGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+ +Q +LLRVLQE ++R +G + + ++VR+++AT++DL +A G FREDL YR Sbjct: 243 IGDVGMKVQSQLLRVLQEGEIRRVGESVPVKVDVRVVAATNKDLKTRVAEGLFREDLLYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLL-RQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 L+VV L +P L ER+EDIP L H R A +P V +++A RL WPGNVRQ Sbjct: 303 LDVVHLHLPPLRERSEDIPALVEHFAGRHARGGVRPVV---TSEANARLAAYDWPGNVRQ 359 Query: 356 LVNVIEQCVALTSSPV---------ISDALVEQALEGENTALPTFVEARNQFELNYLRKL 406 L NV+ + +AL + V I DA + + G +P+ E Y ++ Sbjct: 360 LENVVARALALNVTGVLGPQDFPEPIGDASTPK-MAGLAGDMPSLAE----LSRRYAAQV 414 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 LQ GN + AAR+ +R YKLL E ++ Sbjct: 415 LQHVGGNKSEAARLLDVDRKTLYKLLEAPEAES 447 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 155/376 (41%), Positives = 224/376 (59%), Gaps = 11/376 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGL-RVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDDDP +L+ L EG++V AESG + + R+ + D+V+ DL M + G Sbjct: 5 VLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQD 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA- 125 E++ PVI++TA G I V A Q G F KP + + +I +AL A Sbjct: 65 TLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALSMGAL 124 Query: 126 ---------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A+ + ++ SP M+ + A+S + +LI G+SG GKE+ A+A Sbjct: 125 KGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIARA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H +S R KPF+A+NCGA+PE L+ES LFGH +G+FTGA G FQ A GGTLFLDE Sbjct: 185 VHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFLDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P +QVKLLR LQE ++ P+GS R + ++VRI+SAT+RDL +A+A G FREDLYYR Sbjct: 245 VGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV ++ P+L ER EDIP L + +R+ V + + + L WPGNVRQL Sbjct: 305 LNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVRQL 364 Query: 357 VNVIEQCVALTSSPVI 372 N + + + L +P + Sbjct: 365 ENAVYRAIVLADAPYL 380 >UniRef50_Q2BM46 C4-dicarboxylate transport transcriptional regulatory protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM46_9GAMM Length = 449 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 171/453 (37%), Positives = 258/453 (56%), Gaps = 24/453 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++++DD+ + + + L EGY+ V E + + + ++I D+RMD M Sbjct: 6 KNGQVIVIDDEEIVRESMIQTLDLEGYNAVAFEDPSCAISHCSINWQGVIICDVRMDLMH 65 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + +I ++ P +PVI+ + H I A+ A +QG + FL K D ++ A ++ Sbjct: 66 GLDVLEKILEIDPEIPVIMFSGHSDIAVAIKAIRQGAYDFLEKNDDPQNHLNTVERAWKK 125 Query: 124 SAPA-TDERWREAIVTRSPLMLRLLEQARLV----------AQSDVSVLINGQSGTGKEI 172 + R R+AI + + RL+ Q+ +V AQ DV ++ING++GTGKE+ Sbjct: 126 RELVLENRRLRKAIDGQGEITRRLVGQSDVVTKLRDTVLQLAQVDVDLIINGETGTGKEV 185 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ +H+ SPR KPF+A+NCGA+ E ++ESELFGH G+FTGA R G + A GGTL Sbjct: 186 VAKCLHDFSPRKDKPFVALNCGAVTESVIESELFGHEAGSFTGASKKRIGKIEYASGGTL 245 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEI MPA LQV+LLRVLQER ++ LG N DI I++R+I+A+ DL A G FRED Sbjct: 246 FLDEIESMPASLQVRLLRVLQERVLQRLGGNSDIPIDIRVIAASKMDLRIASDEGSFRED 305 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV SL +P+L +R EDIPLL + + QA +R K + +++L SWPGN Sbjct: 306 LYYRLNVGSLDLPSLDQRKEDIPLLFSFFVDQANQRFKREEKPIPELLLQQLSMQSWPGN 365 Query: 353 VRQLVNVIEQC---VALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQI 409 VR+L NV E+ + LT+ + + E L+ E +E + L+ Sbjct: 366 VRELRNVAERWALGLPLTNRLELPEVKSEGNLD----------EIVACYEREVILTALKA 415 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDANDF 442 G + A+ G R + Y + +++LD DF Sbjct: 416 HNGQIEQTAQSLGIPRKKLYLRMKKYDLDKKDF 448 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/459 (36%), Positives = 265/459 (57%), Gaps = 28/459 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +P +++ +DD + +L+ L +V+ ES E L + +V +V++DLRM Sbjct: 1 MNAQPV-VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM++ ++ P VI++T H ++ AV + + G F ++ KP + L ++ A Sbjct: 60 RIDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERA 119 Query: 121 LEQ-SAPATDERWRE---------AIVTRSPLM---LRLLEQARLVAQSDVSVLINGQSG 167 L + + R RE I+ RS M RL++ A A D SVLI G+SG Sbjct: 120 LSHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAA---AAYDCSVLITGESG 176 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+ IH SPR F+AINC A+PEQ++ESELFG+ +GAFTGA + GLF+ A Sbjct: 177 TGKELVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETA 236 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGT+FLDE+ + LQ KLLRVLQ+ LG +NVR+++AT+RD+P +A+ Sbjct: 237 NGGTIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQE 296 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FREDLYYRL V+ + IPAL +R +D+PLLAN+ + + A+R V ST + LM Sbjct: 297 TFREDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRH 356 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALV--------EQALEGENTALPTFVEARNQFE 399 WPGNVR+L NVI++ + L VI + ++ E ++ + P +E + E Sbjct: 357 DWPGNVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLE---EVE 413 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + ++RK L+ T G+ A + G +++ ++ + R+ ++ Sbjct: 414 VYFIRKTLRETNGDRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 230/370 (62%), Gaps = 8/370 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +++ DD+P + ++ L L +GY V TA +G E + L + D+++ D +M + G+ Sbjct: 3 AKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTGV 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +I+++ P V+ +TA GS+ AV A ++G + F+ KP D D L + A+E Sbjct: 63 EALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHCR 122 Query: 126 PATDER--------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + I+ + +++ Q VA++D +VLI+G+SGTGKE+ A AI Sbjct: 123 MKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAI 182 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S R S+PF+AINCGA+P L+ESELFGH +GAFT A + G F+ A GGTLFLDEI Sbjct: 183 HDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEI 242 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P QVKLLRVL+ERK+ +G + I +NVRI++AT+R+L + + G+FR DL YRL Sbjct: 243 GELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRL 302 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV ++++P L ER EDIPLLA LR+ + + + +AM +L WPGNVR L Sbjct: 303 NVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDLE 362 Query: 358 NVIEQCVALT 367 N ++ + L Sbjct: 363 NAVQSAMILC 372 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/449 (38%), Positives = 260/449 (57%), Gaps = 23/449 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+VDDD + + RL+ G+ + A + L + R D+ + D++M M G+ L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 A + P VI+LT GSI AV A + G F +LTKP L I+ A ++ Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 128 TDERWREAIVTRSP-------LMLRLLEQARLVAQ---SDVSVLINGQSGTGKEIFAQAI 177 + + + I+ RS + + E RL+ + S+ ++LI G+SGTGKE+ A+A+ Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H AS R +P + INC ALPE LLESELFGH +GAFTGAV+ + GLF+ A+G TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP LQ KLLRVL++ +R +GS ++ +NVRI++AT+R + + G FREDLYYR+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+SL++P L RT DIPLL H L + R +P A+ L +WPGNVRQL+ Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGKDW-RIEP-------TALSALEQYAWPGNVRQLI 360 Query: 358 NVIEQCVALTSSPVI-SDALVEQALEG-ENTALPTFVEARNQFELNYLRKLLQI---TKG 412 N IE+ + I ++ L + L LP ++ + +K++++ KG Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEVLKREKG 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAND 441 N + AARM G +R + Y+LL + ++ + Sbjct: 421 NKSRAARMLGIDRRKLYRLLEKFTIETGE 449 >UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVQ8_HALNC Length = 459 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/449 (35%), Positives = 254/449 (56%), Gaps = 15/449 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + +DDDP +L +EG V +S L DL+ISDL+M M G++ Sbjct: 7 IAFIDDDPRASELFSRYAQTEGLQVQGFQSVDAAQSWLENNTADLIISDLKMPGMSGLEF 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 A +++ +P +++T + ++ +A+ A + G F+ KP D + L Q L + Sbjct: 67 LAWLRQRDSEVPFVLITGYSTLDNAIDALRLGANDFIKKPYDPEELVQLTHRLLRRDPDP 126 Query: 128 TDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 + EA ++ SP + + + ++V+I G+SG+GKE+ A+AIH+ S + Sbjct: 127 HAHNFSEAERSMLGNSPAIAGVYRVIDKIHDVRINVMIEGESGSGKELAARAIHDRSDFS 186 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 KP+I I+CGAL + LLE+ELFGH +GA+TGA S + GL + A GGT+FLDEIG++ + Sbjct: 187 DKPYIVIDCGALTDTLLENELFGHEKGAYTGASSTKPGLLEVASGGTVFLDEIGNISDAM 246 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 QVKLLRV+QE+++ +G I I+VR I A++RDL + + G FR DLY+RL+VV L+I Sbjct: 247 QVKLLRVIQEQQITRVGGVTPIKIDVRFIVASNRDLAQMVTEGSFRHDLYHRLHVVRLRI 306 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER EDIP+L NH +R A R+ F+ D M R++ +WPGN+R+L N+I++ V Sbjct: 307 PPLRERKEDIPILVNHFIRHFAARYNRPAERFNADCMARILEYTWPGNIRELKNMIKRAV 366 Query: 365 ALTS------------SPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKG 412 AL+S +P + L+ G A+ + E Y+ KLL+ G Sbjct: 367 ALSSEAEIRLDQEAEATPPWASGLIRPQSSGGAEAIDADHPTLDVLERRYIEKLLKEYDG 426 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAND 441 N A+ G N++ ++ + +E A++ Sbjct: 427 NREKTAQTLGINKSTLWRKMQSYEQSASE 455 >UniRef50_C1A631 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A631_GEMAT Length = 472 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 166/462 (35%), Positives = 259/462 (56%), Gaps = 36/462 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM-DEMDGMQ 66 +L+VDD+P + +++G L+SEGY V A G+ GL + + D+ + DL M ++DG+ Sbjct: 4 VLIVDDEPNIRRMVGALLSSEGYDVRDASDGSTGLALAETSEPDVALIDLMMPGDLDGLG 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++++ +P MPV++++ ++ DAV AT+ G F+FL KP+ + + A+ A E Sbjct: 64 LLEKLRERRPDMPVVMMSGRAALTDAVRATRLGAFTFLEKPLTPEGVLLALASAFELRQA 123 Query: 127 AT-------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 D ++ SP M + V +D VLI G+SGTGKE+ A A+H Sbjct: 124 RRAAAALREDLGISGEMIGDSPAMRDVRALLARVGPTDARVLITGESGTGKELAAAALHV 183 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 +S R +PF+ +NC A+P L+ESE+FGH RGAFTGA R G F+ A GTLFLDE+GD Sbjct: 184 SSARRDRPFVRVNCAAIPRDLVESEMFGHERGAFTGATERRIGRFELAHTGTLFLDEVGD 243 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 + A Q KLLR ++ R++ +G + I ++VRI++AT++DL +A+A G FREDL++RLNV Sbjct: 244 LGAEAQAKLLRAIEAREIERVGGGKPIKVDVRILAATNKDLTRAVADGSFREDLFFRLNV 303 Query: 300 VSLKIPALAERTEDIPLLANHL-LRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 + + +P L +R D+P L H R +P V+ + A+ L WPGN+R+L N Sbjct: 304 IPIHLPPLRDRPGDLPALVRHFSARHRTRTGRPLVQ-WHESALGALSAYRWPGNIRELAN 362 Query: 359 VIEQCVALTSSPVISDALVEQ------ALEGENTALPTFVEARNQFEL------------ 400 V+E+ L + ++ V Q AL G +A+P+ EA + + Sbjct: 363 VVERLAILHAGSEVTRTEVRQVLPETAALPGATSAVPSGTEAGTEVDTPDPASAAHMPLS 422 Query: 401 ----NYLRKLLQI----TKGNVTHAARMAGRNRTEFYKLLSR 434 Y R+L+ + GNV AAR +R Y+ + R Sbjct: 423 DALDAYERRLISAALAQSDGNVAEAARRLQTDRPNLYRRMRR 464 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 153/380 (40%), Positives = 232/380 (61%), Gaps = 21/380 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + L L E + TA +G E +++ VD++++D++M M+G++L Sbjct: 6 ILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMPGMNGIEL 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 +++ ++P P I+++A+ V A + G + F+TKP D L + A++ S Sbjct: 65 LRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQASPSF 124 Query: 126 --PATDE----------------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 P+T + + I+ +S M +L + +A + SVLI G++G Sbjct: 125 QLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLITGETG 184 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH AS R+ K FIA++C AL L ESELFGH +G+FTGA R G F+AA Sbjct: 185 TGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIGRFEAA 244 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGTLFLDEIG++ A QVKLLR+L+ R +G N + + R+I+AT+RDL K + G Sbjct: 245 DGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRKMVQAG 304 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 EFREDLYYRL+V++L++P L +R EDIP L H L + ++ V+ F+ DAM RL T Sbjct: 305 EFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMARLCTY 364 Query: 348 SWPGNVRQLVNVIEQCVALT 367 WPGNVR+L NV+E+ L+ Sbjct: 365 DWPGNVRELRNVVERMAVLS 384 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 167/442 (37%), Positives = 251/442 (56%), Gaps = 15/442 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +P +L++DDD L + + L G+S A G G+ L +E D+V++DL+M ++ Sbjct: 6 EPLQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLH 65 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA--- 120 G+++ ++++P V ++T + AV A ++G +L KP+D L I+++ Sbjct: 66 GLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKR 125 Query: 121 ---LEQSAPATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 L + DE++ E +V SP M R+L+ + A S SVLI G++GTGK++ A+A Sbjct: 126 VGTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H PR +KPF A+NC L E LL+SE+FGH +GAFTGA R G F+ A GGTLFLDE Sbjct: 186 LHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP LQ KLLR L+ +V +G+N + ++VRII+AT++DL K + G FR+DLY+R Sbjct: 246 IGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLYFR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L V ++K+P L E EDIP L +H L++ A R V + K WPGNVR+L Sbjct: 306 LKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVREL 365 Query: 357 VNVIEQCVA------LTSSPVISDALVEQALEGENTALPTFVEAR--NQFELNYLRKLLQ 408 N++ + LT D V+ A E P + R ++ E Y+ K L Sbjct: 366 RNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYIEKALD 425 Query: 409 ITKGNVTHAARMAGRNRTEFYK 430 +T GN AAR+ + Y+ Sbjct: 426 LTGGNREEAARLLNISERTLYR 447 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 173/453 (38%), Positives = 247/453 (54%), Gaps = 22/453 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++ VDDDP +L + V + L + DL+I+DL M + GM Sbjct: 5 ANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMPGLSGM 64 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-- 123 L + I+ V +PVII+T + S+ +A+ A + G F+ KP D D L I+ LE Sbjct: 65 DLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERTLEGER 124 Query: 124 --------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 DER R +V M + VA +V+I G+SGTGKE+ A+ Sbjct: 125 LKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGKELVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH P KPF+ I+CGA+ + LLESELFGH +GAFTGA + GL + A GGT+FLD Sbjct: 185 AIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGGTVFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI ++ +QVKLLRV+QE++V +GS R I I+VR I+AT+R+L + GEFR DLY+ Sbjct: 245 EICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFRHDLYH 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + +P L R EDIP L + + A+R+ V F A++RL T WPGNVR+ Sbjct: 305 RLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVI--------SDALVEQALEGENTALPTFVEARNQFELNYLRKLL 407 L N++E+ +AL PV+ + A A + + P E Y+ K L Sbjct: 365 LRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLA----TLERRYILKTL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 Q GN AR G N++ ++ L ++E +A+ Sbjct: 421 QRLDGNREQTARALGINKSTLWRKLQQYEQEAD 453 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 181/482 (37%), Positives = 272/482 (56%), Gaps = 52/482 (10%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL++DDD +L L L V A + A+GL +L + D V+ D+++ + +G+ Sbjct: 30 NLLVIDDDRTILALAEKALAPIA-DVSVAANAADGLGLLREGEFDAVLLDIQLPDQNGLA 88 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ--- 123 ++ EI++ +PVI +T + A+ A Q G F ++ KP++ ++L ++ A+EQ Sbjct: 89 VYCEIREHDRRIPVIFMTVEAASNTAIEAMQLGAFDYIAKPLNVESLRDLVEKAIEQRQI 148 Query: 124 -SAP----ATDE---RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 S P A DE + E + RSP+ML + + VA+ DV +L+ G+SGTGKE+ A+ Sbjct: 149 SSVPVAISADDEGGDQSAELFIGRSPVMLDVFKAVGKVAKQDVPILVRGESGTGKELVAR 208 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+ S R+ + F+A+NC ALP+ LLESELFGH +GAFTGA S R G F+ GGTLFLD Sbjct: 209 ALFQYSHRSDETFLAVNCAALPDNLLESELFGHEKGAFTGAESRRIGKFEQCNGGTLFLD 268 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM +Q K+LRVLQE++ +G N+++ NVRII+AT+R L + + G++REDL Y Sbjct: 269 EIGDMAPTVQAKVLRVLQEQRFERVGGNKELTTNVRIIAATNRPLEQMVVDGDYREDLLY 328 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAA-ERHKPFVRAFSTDAMKRLMTASWPGNVR 354 RLN V++++P L +R D+P L L QA E +KP + S +A+ L WPGNVR Sbjct: 329 RLNGVTIELPPLRDRLSDVPALIRFFLAQAKIEFNKPDLEGLSPEAVDLLTVYDWPGNVR 388 Query: 355 QLVNVIEQCVALTSSPVI------------------SDALVEQALEGE--NTALPTFV-- 392 QL VI +CV T PVI S++ + LE E + LP V Sbjct: 389 QLRAVIRRCVLDTVMPVITPDTLPDAIAGTRNSGAKSESGTNEKLESEAPGSQLPQLVQR 448 Query: 393 -----------EARNQFELNYLRKLLQITKGNVTHAARMAG------RNRTEFYKLLSRH 435 EA E + ++LQ T GN + AA + G R+R Y ++ + Sbjct: 449 LLKEKSTNVYGEAMEYMERFVILQVLQSTDGNQSQAAEILGITRGKLRDRINSYNIVLKS 508 Query: 436 EL 437 ++ Sbjct: 509 DV 510 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 256/444 (57%), Gaps = 25/444 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L+V+DD G +LL L +G+ V A G EGLR + +E+ DLV+SDL+M G+ Sbjct: 3 ANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP-----------------V 108 +LF E ++ I +TA G + +AVAA ++G F FLTKP V Sbjct: 63 ELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALESV 122 Query: 109 DKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 +++ L+ ++ D +E+S DE ++ M + + VA S +VLI+G+SGT Sbjct: 123 ERERLFISLKD-MERSGLPPDE-----LIFSGSAMDAVRKMIYDVAPSTATVLIHGESGT 176 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+ IH S R FI +NC A+PE LLESELFGH +GAFTGA+ R G F+ AE Sbjct: 177 GKELVARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAE 236 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGT+FLDEIG+MPA LQ KLLRVLQER +G + I NVR+I+AT+RDL + +A Sbjct: 237 GGTIFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKR 296 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FR+DL+YRLNV + +P L R + + LA + + A + ++ + +A++ + Sbjct: 297 FRDDLFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYH 356 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQ 408 WPGN+R+L NVIE+ V L + + L + G+ T V E N + + L+ Sbjct: 357 WPGNIRELQNVIERGVILAREELTAPEL-PAMIAGKETEGGPKVGILKDIERNCILEALK 415 Query: 409 ITKGNVTHAARMAG-RNRTEFYKL 431 +GN AA G RT Y+L Sbjct: 416 NNRGNRRMAAETLGISKRTLQYRL 439 >UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C4ZIM7_THASP Length = 451 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 166/438 (37%), Positives = 240/438 (54%), Gaps = 4/438 (0%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + L++DD + + L R EG+ V +GAE L + +V+SD+R+ + +G L Sbjct: 12 ICLIEDDEIIGESLSDRFRLEGFDVDWCRTGAEARDALATRRHAVVVSDIRLPDCNGGDL 71 Query: 68 FAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 F E+ P +P + +TA G+I AVA + G ++TKP D DAL + E+ Sbjct: 72 FIELLAEAPALPPFLFMTAFGAIERAVALIKAGAADYITKPFDPDALVAKVCALAERYGV 131 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 A R+ + SP M R+ E +A+ S+LI G+SG GKE A+ H + Sbjct: 132 ARTASGRDERLGVSPAMGRIAENMPRLARHTESLLITGESGVGKEHVARLFHYHAAGGEA 191 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 PF+A+NC A+PE L+ESELFG+ +GAFTGA R G F+ A+GGTLFLDEIGDMP +Q Sbjct: 192 PFVAVNCAAIPESLIESELFGYEKGAFTGAAKARRGYFEQAQGGTLFLDEIGDMPLSMQA 251 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRVLQE +++ LG I ++ R++ ATH DL + G FREDLYYR+NV+ L+IP Sbjct: 252 KLLRVLQEHRLQRLGGETTIAVDFRLVCATHCDLKAMVEEGRFREDLYYRINVIHLRIPP 311 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L ER EDI H + H R + L W GNVR+L + +E+ L Sbjct: 312 LRERKEDIVWFMQHFVEAFNRAHPEEARRIDPRTQEALARYPWSGNVRELKHAVERACIL 371 Query: 367 TSSPVI-SDALV--EQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGR 423 + PV+ +DA +Q + E + E +YLR +L+ G++TH+A G Sbjct: 372 SPGPVLGADAFFGEDQDVGAEAPTSRPLADYLMDCERDYLRMVLEQHGGHMTHSAEALGI 431 Query: 424 NRTEFYKLLSRHELDAND 441 R ++ + R L A D Sbjct: 432 TRKTLWEKMRRLGLQARD 449 >UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio sp. FW1012B RepID=D2L8S7_9DELT Length = 467 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 178/463 (38%), Positives = 261/463 (56%), Gaps = 32/463 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 AH+LL+DDD L + G + G+++ A S EG L + D+V+ DLR+ + G+ Sbjct: 2 AHILLIDDDAILRETFGGLMRRLGHTLDWAGSLEEGRLALVHGRTDVVLLDLRLPDGYGL 61 Query: 66 QLFAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + EI + PG P VII+T A A + G + ++ KP+ + + ALE Sbjct: 62 DMMPEI-RAAPGSPEVIIVTGQEDPEGAALAIKSGAWDYIQKPLTPHRVTLPLTRALEYR 120 Query: 125 APATDER-----WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 A R REAIV P M L+ A SD SVLI G++GTGKE+FA+AIH Sbjct: 121 AQKAARRPRAVLKREAIVGVGPAMEACLDLVAQAADSDASVLIAGETGTGKELFARAIHV 180 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR + F+ ++C ALPE L+ES LFGH +GAFTGA +R+GLF+ A+GGTLFLDEIG+ Sbjct: 181 NSPRANNNFVVVDCAALPETLVESVLFGHVKGAFTGADRDRDGLFKLADGGTLFLDEIGE 240 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 + +Q LRVLQ+ + RP+GS ++ + R++SAT+RDL A G FREDL YRL Sbjct: 241 LSPGIQKTFLRVLQDGRFRPVGSKNELQSDFRLVSATNRDLSAMAASGVFREDLLYRLRT 300 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + + +PAL R EDI LA H + + ER++ + FS + + L +WPGNVR+L + Sbjct: 301 IVITLPALRLRAEDIKPLAIHYMNRLCERYRLPTKGFSEEFFQALAAYTWPGNVRELCST 360 Query: 360 IEQC-VALTSSPV-----ISDALVEQALEG---------------ENTALPTFVEARNQ- 397 +E+ + + PV + D + Q L+ E +P + E R Q Sbjct: 361 MERVLLQHRTEPVLYPKHLPDEIRIQVLKASAGCEPSGPAPAEGTEAGGVPPWKEFRRQA 420 Query: 398 ---FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E YLR+LL+ + GNV+ AAR++G + + Y L ++ + Sbjct: 421 LDEAERGYLRELLRASAGNVSRAARLSGLSPSRLYDLFRKYNM 463 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 172/452 (38%), Positives = 262/452 (57%), Gaps = 20/452 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ G+ L L G+ V A++G GL ++ DL+ D+ + +DG+ Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + + VI++TA S+ AV + G +LTKP D L AL + A Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 127 ATDE-RWREAI-----VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + R A+ V +SP ML+L + VA +D++VL+ G+SGTGKE+ A+A+H Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 R + F+ +NCGAL + LLESELFGH RGAFTGA + GLF AA+GGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLR LQ+ +++P+G ++VR+++AT+RDL +A+A+G FREDL+YRLNV+ Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 ++++PAL ER ED+P+LA H AA R + S A++ L WPGNVRQL N I Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 361 EQCVALTSSPVIS----------DALVEQALEGENTA----LPTFVEARNQFELNYLRKL 406 E+ V L + + L ++ G T + + ++ E ++ ++ Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRV 434 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ G T A+ + G NRT +K L ++ L+ Sbjct: 435 LEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 168/474 (35%), Positives = 261/474 (55%), Gaps = 35/474 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L++DD+ + + LT Y + A +G + + ++ +E DLVI+DL+M+ Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+++ + ++ P V+++T + S+ AV + G F +L KP D L A+ A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 L------EQSAPATDERWRE----AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + P + R+ +V SP M ++ A +D +VLI G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + F A++CGAL E LL+SELFGH +GAFTGAV +++G+F+ A+GG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDE+ + +Q LLR L+ R+V P+G + ++VR++ AT++DL + +++G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 ED YYR+ V + P L ER DI +A H L + +R+FS DA + L+ SWP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVE--QALEGE-----------NTALPTFVE---- 393 GNVRQL N IE+ V L I+ +E Q GE + +P E Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 394 --------ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 A Q E ++L + L+ GN+T AA AG R+ F L+ +H + A Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKKHGVRA 474 >UniRef50_B8KKY3 Sigma-54 factor, interaction region n=2 Tax=cellular organisms RepID=B8KKY3_9GAMM Length = 445 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 171/443 (38%), Positives = 255/443 (57%), Gaps = 17/443 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDL-----RMDEM 62 LL+VDDD +L L L V+T ++ E +D+ + D+ R Sbjct: 7 LLIVDDDEDVLTAARLLLRQYFGRVITQTDPGMIPDLIASESIDVFLLDMNFAIGRNSGK 66 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G+ EI++ P V+++TA+G + AVAA + G F+ KP D L + A Sbjct: 67 EGLHWLGEIRQRDPAAVVVLMTAYGDLNTAVAAMRDGATDFVLKPWQNDRLVATLRVAAN 126 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 Q + T ++ +P + R+++ + VA +D +VL+ G++GTGKE+ AQ Sbjct: 127 LRHTRAQLSALTTPPPGGTMIAGAPSIQRVMKVVKRVASTDATVLVRGENGTGKELIAQE 186 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR++ P ++++ GAL E L ESELFGH RGAFTGA S+R G FQAA GGTLFLDE Sbjct: 187 LHRLSPRSTAPMVSVDLGALAENLFESELFGHRRGAFTGAESDRAGRFQAASGGTLFLDE 246 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P LQ KLLR L+ R+V PLG + ID+++R+I+AT++ L +ARGEFREDL YR Sbjct: 247 IGNLPLSLQTKLLRALENREVTPLGMDSSIDVDIRLIAATNQPLEDMVARGEFREDLLYR 306 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +N +S+++P L ER ED+P LA++ QAA R++ V+ S +A++ L WPGNVR+L Sbjct: 307 INTISIELPPLRERLEDLPELAHYFAVQAARRYRLPVKEISANALQALRQWGWPGNVREL 366 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN--QFELNYLRKLLQITKGNV 414 + IE+ V ++ SD LV Q + L N E ++ LQ +GNV Sbjct: 367 SHAIERAVIMSE----SDTLVPQDFDLTPRQLDDLTANFNLEDNERRLVQTALQRYEGNV 422 Query: 415 THAARMAGRNRTEFYKLLSRHEL 437 + AA G R Y+ + + L Sbjct: 423 SRAAEALGITRAALYRRMEKFGL 445 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 255/451 (56%), Gaps = 30/451 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + LL + + + V A+ GAE L +++ D+VI+D++M +DG Sbjct: 2 ARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGT 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L +I + PV+ +TA ++ AV A + G +LTKP +++++ ++ L+ S Sbjct: 62 GLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLSR 121 Query: 126 PATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + R ++ S +M +++ A V +SD ++LI+G+SGTGKE+ A+ Sbjct: 122 IMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLAK 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 IH S R+ K F+ +NC A+ L+ESELFG+ +GAFTGA G F+ A GGTLFLD Sbjct: 182 YIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+P Q KLLR LQE+K++ +G N +I ++VRI+ ATH+DL + + FR DLYY Sbjct: 242 EIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA-SWPGNVR 354 R+NV L P L ER EDIP LA H L+++ + + TD KRL+ WPGNVR Sbjct: 302 RINVFPLSPPPLRERKEDIPALAVHFLKESFNGNDVVL----TDGAKRLLAQYPWPGNVR 357 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALE--------GENTA---LPTFVEARNQFELNYL 403 +L N IE+ V L ++A+ Q L GEN LP E + + Sbjct: 358 ELANAIERAVILEE----NNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIV 413 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 R+ L + N T AA+M G R +F L+ R Sbjct: 414 RQALDMAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 290 bits (742), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 163/446 (36%), Positives = 259/446 (58%), Gaps = 19/446 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ L LL + EG+ V+ A GL+ L++ +D+V+ D+++ + G++L Sbjct: 62 ILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVEL 121 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 I++ P +I+LTA+G+IPD V A + G F ++TK D + + A E++A A Sbjct: 122 AKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAALA 181 Query: 128 TD----ERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 ER E I+ +S + + +E A+ VA +D ++L+ G++GTGKE+FAQAI Sbjct: 182 RRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQAI 241 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R ++ F+AINC A LLESE+FGH GAFTGA +R+GLF+ A GT+FLDE+ Sbjct: 242 HQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDEL 301 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+M LQ KLLRV++ + +G + +NVRII+AT+RDL +A G FREDL+YR+ Sbjct: 302 GEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYRI 361 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V + +PAL +RTEDI +LA H + + + + + L +W GN+R+L Sbjct: 362 SVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIRELK 421 Query: 358 NVIEQCVALTSSPVIS------DALVEQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 NVIE+ V L+S ++ D +++ L F + E +++K+L T+ Sbjct: 422 NVIERAVILSSGTELAPDDLPIDIQFHPSVKS-GKQLSAF--SLQSVEKLHIQKVLNHTQ 478 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHEL 437 GN AAR+ Y+ + + L Sbjct: 479 GNKAEAARLLEIGIATLYRKIEEYRL 504 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 290 bits (742), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 185/465 (39%), Positives = 251/465 (53%), Gaps = 35/465 (7%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L+VDDD G+ +L L EG VV A S AE L + D+ + + +GM L Sbjct: 6 LIVDDDEGIRWILDKVLQEEGVDVVQAGSIAEAKAALADGDFSVTFLDVYLPDGNGMDLL 65 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID---DALEQSA 125 A MPV++LTA + A A + G +L KP D D + Q + A + SA Sbjct: 66 AS----GLSMPVVMLTAETTFGHAAEAYRMGAMEYLPKPFDLDEVRQLLSRVRPAQKASA 121 Query: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 PA + I+ RSP M ++ VA SD++VLI G+SGTGKE+ A+ +H S R Sbjct: 122 PA-QKMADGLIIGRSPAMQQMFRTLGRVASSDLTVLITGESGTGKEMVAKTLHERSQRAD 180 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 K F+AIN A+P LLESELFGH +G+FTGA REG F A+GGTLFLDEIGDMP LQ Sbjct: 181 KAFVAINTAAIPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIGDMPLALQ 240 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLRVL+E +V+ +G + +NVR+++ATH++L +A+GEFREDLYYRLNV+ ++IP Sbjct: 241 AKLLRVLEEGRVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLNVIPVQIP 300 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L +R +DIP LAN LL QA + DAM L WPGNVR+L NV+ + Sbjct: 301 PLRDRRDDIPELANFLLEQAVKELGMEQPILLDDAMDLLSRHDWPGNVRELKNVMRRLAV 360 Query: 366 LTSSPVISDALVEQAL---EGENTALPTFVEARNQFELNYLRKL---------------- 406 LT I+ V AL + T +A + YL +L Sbjct: 361 LTPGATITLTDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLHQHLLEQI 420 Query: 407 --------LQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 L+ GN + M G NR KLL+++ ++ F+ Sbjct: 421 EPPLLVLALEQCNGNQLKVSEMLGLNRNTVRKLLNKYNINPQYFR 465 >UniRef50_B2RIU9 Two-component system response regulator n=38 Tax=Bacteria RepID=B2RIU9_PORG3 Length = 464 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 177/459 (38%), Positives = 257/459 (55%), Gaps = 30/459 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE----KVDLVISD----LRM 59 +L+VDDD + L L L GY+ V A S E L ++ K +++ D L Sbjct: 7 ILVVDDDVAVCAALRLVLKRAGYNPVIANSPDEALSIMRNPDGGCKPAVILMDMNFSLST 66 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +G++L ++Q + PVI++TA SIP AV + G F F+ KP D D L + ID Sbjct: 67 SGREGLELLEKMQ-IFTSCPVILMTAWASIPLAVEGMRLGAFDFIGKPWDNDRLLRTIDT 125 Query: 120 ALEQSAPA-----TDERWREA----------------IVTRSPLMLRLLEQARLVAQSDV 158 AL +AP+ +++ R+ I+ RS + ++ EQ R +A + Sbjct: 126 ALHLAAPSAVANPSEQSDRDTARQPKATVQENDPCAHIIGRSDAICKIKEQIRRIAPTHA 185 Query: 159 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS 218 SVLI G+SGTGKE+ A+A+H S R S PF+ +N G +PE L ESELFGH +GAFT A S Sbjct: 186 SVLITGESGTGKELIAEALHRGSKRASAPFVKVNLGGIPESLFESELFGHKKGAFTNAFS 245 Query: 219 NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHR 278 +R+G F+ A+GGT+FLDEIG++P QVKLLRVLQE+ PLG + +++R++SAT+ Sbjct: 246 DRKGRFELADGGTIFLDEIGELPVGNQVKLLRVLQEQTFEPLGESVSHRVDIRVVSATNA 305 Query: 279 DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFST 338 L + +A G FREDLYYR+N++ L +P L ER EDI LL A+ +S Sbjct: 306 SLEQMVAEGRFREDLYYRINLIHLHLPPLRERQEDIQLLVEAFSEAFAQSIGLPPAVWSA 365 Query: 339 DAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQF 398 +AM+R+ PGNVR+L NV+E+ + L+ S IS V A + A Sbjct: 366 EAMRRICAMPLPGNVRELKNVVERTLLLSGSREISARDVADFGSQVTAADHSDERALTDM 425 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E +R+ L GNV+ AAR G +R Y+ + ++ L Sbjct: 426 EEAAIRETLTKYNGNVSRAARALGLSRAALYRRMEKYGL 464 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 178/489 (36%), Positives = 261/489 (53%), Gaps = 53/489 (10%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L++DD+ G+ L L EG+ V+ A SG +GL +L RE DLV D+ M MDG+ Sbjct: 3 ARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS- 124 + ++ +P +PVI+++ HG+I AV A ++G F+ KP+ + + A ALE Sbjct: 63 AVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGD 122 Query: 125 APATDERWREAIVT--------RSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 +E R+++ T RSP+M L Q VA +D VLI G++GTGKE+ A+A Sbjct: 123 LRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R +P +A+NC A+PE+L+ESELFGH +GAFTGA S + G F+ A GTLFLDE Sbjct: 183 IHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM Q K+LR+LQE++ +G +R + ++VR+I+AT+++L +A G FREDLYYR Sbjct: 243 IGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L V L +P L ER D+PLL + ++ A + F+ DA + L WPGNVR+L Sbjct: 303 LRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTA----------------------------- 387 N +E+ + L + ++ +++ + A Sbjct: 363 RNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGGD 422 Query: 388 -----LPTFV----------EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLL 432 LP AR FE YL L GNVT A G R+ Y+ L Sbjct: 423 PLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRKL 482 Query: 433 SRHELDAND 441 + + D Sbjct: 483 KGYNIQTTD 491 >UniRef50_UPI00016C4268 cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4268 Length = 475 Score = 290 bits (741), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 181/464 (39%), Positives = 252/464 (54%), Gaps = 34/464 (7%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 AH+LLV+D PG + R + V A+S A+ L + D ++ DL+ G Sbjct: 2 AHVLLVNDTPGSIAEPVRRALRASHHVAVAQSVADCLARVTATPPDAILLDLQHPGRGGF 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 F I+ V +PVI L + + A ++G + KP+D L +A+D+AL+ + Sbjct: 62 DAFDAIRSVDTRVPVIFLAPAAAAGVVIEAIKRGASDCVFKPLDLVQLQKALDEALDAAG 121 Query: 126 ----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 P TD+ I+ P M+ + + VA DV VLI G+SGTGKE+ A+ Sbjct: 122 RVHEPDTRPDPGTDDGGTGPIIGSCPAMMEVYKAVGRVAPQDVPVLITGESGTGKELVAR 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R +PF+A+NC A+PEQLLESELFGH +GAFTGA R G F+ +GGTLFLD Sbjct: 182 AVHQYSRRAGRPFVALNCAAIPEQLLESELFGHEKGAFTGADRRRIGRFEQCDGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP LQ KLLRVLQE+ +G + +VRIISATHRDL A G FR DLYY Sbjct: 242 EIGDMPLALQSKLLRVLQEQAFERVGGGETVRTDVRIISATHRDLKARAAAGTFRPDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V ++++P L +R ED+PLL H L + V S +A+ RL +WPGN+R+ Sbjct: 302 RLGVFTMRLPPLRDRAEDLPLLVRHFLGRFNRELGRRVSDISAEALARLTQYAWPGNLRE 361 Query: 356 LVNVIEQCVALTSSPV-ISDALVEQALEGENTA--------LPTFV-------------E 393 L +V++Q + T+ V + AL + A A L FV E Sbjct: 362 LQSVLKQALLRTTGTVLLPSALADMAGPSAAPASEPPARADLHQFVRRRLSDGSENLLEE 421 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 AR + + L ++++T+GN AAR+ G R + L HEL Sbjct: 422 ARLELDRFLLPMVMELTRGNQVRAARVLGVARLTLRRRL--HEL 463 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 168/442 (38%), Positives = 251/442 (56%), Gaps = 38/442 (8%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +LLVDD+ ++LL RLT +GYSV + + L ++ + D+ + D+ M+ MDG+ Sbjct: 4 CRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGMDGL 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-------------DKDA 112 L + +K+QP + +I+LT + ++ A+ A ++G + +LTKP+ D+ Sbjct: 64 ALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALDRKK 123 Query: 113 LYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 L ++ +E +R I+ S ++ L V+ S + VLI G+SGTGKE+ Sbjct: 124 LQDYSNNLIETIQRTNKKR---EIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A A+H S R PF+ IN A+P QLLESELFGH +GAFTGA N++GL + A+ GTL Sbjct: 181 VANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM A LQVKLLR L + RP+G NVR+++AT+ +L +A+ G FRED Sbjct: 241 FLDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRL+VV+L +P L ER D +LA + LRQ+ + K S +A L+ ++PGN Sbjct: 301 LYYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSKKK-----LSKEAEMFLLNYTFPGN 355 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKL-LQ-IT 410 VR+L N+IE+ + L+ +N P AR + N ++ L LQ I Sbjct: 356 VRELANLIERGILLSK---------------DNDLYPNDFFARETYSKNNMKSLALQDIE 400 Query: 411 KGNVTHAARMAGRNRTEFYKLL 432 K ++ G N+TE K+L Sbjct: 401 KEHICQVLEKTGWNKTEAAKIL 422 >UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=7 Tax=Bacteroidetes RepID=A4CMC3_9FLAO Length = 441 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 163/430 (37%), Positives = 253/430 (58%), Gaps = 12/430 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + ++L+VDDD G+L+LL L S GY A S E L +L +DL+I+D++M Sbjct: 1 MGLRKENILMVDDDVGILELLQRHLQSLGYHTFKALSVKEALFILKDSPIDLLITDIQMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DG+QL ++ PGMP +++T + S+ A + G +LTKP ++ L QA+ A Sbjct: 61 EVDGLQLVRYAEEHYPGMPKLVITGYPSVAGAQETFRSGAADYLTKPFTREELKQAVRKA 120 Query: 121 LEQ--------SAP--ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L +AP +T + E + P L+E V + ++L++G+SGTGK Sbjct: 121 LASDSRKPDAPTAPTLSTGAGYAEMVGDSQPFR-NLVEIISRVRDNRATLLVHGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H + PF+A+NC A+PE L E+ELFG+ +GAFT A R G FQAAE G Sbjct: 180 ELVARAVHYSGKFARGPFVAVNCAAIPENLQEAELFGYVKGAFTDARETRTGFFQAAERG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG +Q KLLR LQE+++ +GS + +++R+I+AT+ +L +A+A+ EFR Sbjct: 240 TLFLDEIGSASQAVQAKLLRALQEKEITKVGSRKTEKVDLRVIAATNSNLREAIAKKEFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRL VV +++P L +R DIPLL L++ ++ + +A++ L WP Sbjct: 300 EDLFYRLTVVEIEVPPLRDRKSDIPLLTTRFLQKYGVEYRDRLLKIDPEALQILQDYHWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GN+R+L NVI++ V ++ V + L + F R + E +Y+R++L T Sbjct: 360 GNIRELENVIQRAVIMSDGTVGPEHLPGHLKFQIDFPQDGFASLR-EMERDYVRRVLAHT 418 Query: 411 KGNVTHAARM 420 GN T AA + Sbjct: 419 GGNKTRAAEI 428 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 154/375 (41%), Positives = 228/375 (60%), Gaps = 10/375 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + + + L+ EG+ V A SG E ++ E++DL + DL + DG+++ Sbjct: 4 ILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIEV 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++ P + VII+T +GS+ AV + Q G F ++ KP DAL + AL+ Sbjct: 64 LKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQTLK 123 Query: 128 TDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R R I+ +S + Q R +A+ +VLI G+SGTGKE+ A+AI Sbjct: 124 REVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARAI 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S R + FIAINC ++P LLESELFGH +GAFTGA ++GLF+ A GT+FLDEI Sbjct: 184 HDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+M +QVKLLRVLQER +R +G+ +DI+I+ R+I+AT+R+L K + FREDL+YRL Sbjct: 244 GEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRL 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV + IP L ER DI LA + L + R S +A + + +WPGNVR+L Sbjct: 304 NVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRELR 363 Query: 358 NVIEQCVALTSSPVI 372 NVIE+ + S P + Sbjct: 364 NVIERICIMRSGPTL 378 >UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW3_THEYD Length = 449 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 234/374 (62%), Gaps = 9/374 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+ D + L + L L EG+ V A + + L + DL I ++ + + DG++L Sbjct: 5 LLIADGNSTLRESLSNYLQKEGFIVDCASNFQQALNIYASYIHDLAIIEIELPDGDGIEL 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA-- 125 ++I+ + P +I+ T++ SI A+ A + V +L KP D + ++ ++ S Sbjct: 65 ASKIKILNPNAKIILTTSYPSISTALKAIKIKVEDYLIKPFVYDEIKLSLKKLIKPSIVE 124 Query: 126 ------PATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 P E+ AI+ S + L E+ R +A + +VL+ G++GTGKE+FA+AIH Sbjct: 125 EPKEKIPTFKEKEELCAIIGESVEIKLLFEKIRKIANTPTNVLLLGETGTGKELFARAIH 184 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 AS R KPF+AINC +LPE LLESELFG +GAFTGA S+++GL + A+GGT+FLDEIG Sbjct: 185 EASYRRKKPFVAINCASLPENLLESELFGFIKGAFTGAASDKKGLLEIADGGTVFLDEIG 244 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 D+P LQ KLLRVL++R++RPLGS +++R ISAT++DL + + G+FREDL++RLN Sbjct: 245 DLPLSLQAKLLRVLEDREIRPLGSVISKKVDLRFISATNKDLIEEVKEGKFREDLFFRLN 304 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V++L IP L ER DI +LA+H +R+ A + ++ + A+K L WPGN+R+L N Sbjct: 305 VITLSIPPLRERGRDIEILAHHFMRKFAIKMGKNLKKIDSQALKLLYKHPWPGNIRELQN 364 Query: 359 VIEQCVALTSSPVI 372 VIEQ V + I Sbjct: 365 VIEQAVVFCETDTI 378 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 714 0.0 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 680 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 659 0.0 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 659 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 657 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 653 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 651 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 649 0.0 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 648 0.0 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 647 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 647 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 646 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 645 0.0 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 643 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 643 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 641 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 640 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 640 0.0 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 636 0.0 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 636 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 636 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 635 0.0 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 635 e-180 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 632 e-180 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 632 e-179 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 631 e-179 UniRef50_Q6ARB9 Probable two-component system response regulator... 631 e-179 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 631 e-179 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 631 e-179 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 631 e-179 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 631 e-179 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 629 e-179 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 629 e-179 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 628 e-178 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 628 e-178 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 628 e-178 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 625 e-178 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 625 e-177 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 623 e-177 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 621 e-176 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 621 e-176 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 619 e-176 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 618 e-175 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 618 e-175 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 617 e-175 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 617 e-175 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 616 e-175 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 616 e-175 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 615 e-174 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 613 e-174 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 611 e-173 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 610 e-173 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 609 e-173 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 609 e-173 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 609 e-173 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 609 e-173 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 608 e-172 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 607 e-172 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 606 e-172 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 606 e-172 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 606 e-172 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 606 e-172 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 605 e-171 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 605 e-171 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 604 e-171 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 604 e-171 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 604 e-171 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 603 e-171 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 603 e-171 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 603 e-171 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 601 e-170 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 601 e-170 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 601 e-170 UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-... 601 e-170 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 600 e-170 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 599 e-170 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 599 e-170 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 599 e-170 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 599 e-170 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 598 e-169 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 597 e-169 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 597 e-169 UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC ... 596 e-169 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 596 e-169 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 596 e-169 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 596 e-169 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 595 e-169 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 595 e-168 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 594 e-168 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 593 e-168 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 593 e-168 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 592 e-168 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 591 e-167 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 591 e-167 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 590 e-167 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 590 e-167 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 590 e-167 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 589 e-167 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 589 e-167 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 589 e-166 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 588 e-166 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 588 e-166 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 587 e-166 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 587 e-166 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 587 e-166 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 586 e-166 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 586 e-166 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 586 e-166 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 585 e-166 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 585 e-165 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 584 e-165 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 584 e-165 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 583 e-165 UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 582 e-165 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 582 e-165 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 582 e-164 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 582 e-164 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 582 e-164 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 581 e-164 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_D2L101 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 580 e-164 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 579 e-164 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 579 e-164 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 579 e-164 UniRef50_Q6MIW1 Nitrogen assimilation regulatory protein NtrX n=... 579 e-164 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 579 e-164 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 579 e-164 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 578 e-163 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 578 e-163 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 578 e-163 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 578 e-163 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 578 e-163 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 578 e-163 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 578 e-163 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 577 e-163 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 577 e-163 UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional respo... 577 e-163 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 577 e-163 UniRef50_C5V657 Two component, sigma54 specific, transcriptional... 577 e-163 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 576 e-163 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 576 e-163 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 576 e-163 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 576 e-163 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 576 e-163 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 575 e-163 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 575 e-162 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 575 e-162 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 575 e-162 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 574 e-162 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 574 e-162 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 574 e-162 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 574 e-162 UniRef50_B8IB91 Two component, sigma54 specific, transcriptional... 573 e-162 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 573 e-162 UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional... 573 e-162 UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional... 573 e-162 Sequences not found previously or not previously below threshold: >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA Sbjct: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM Sbjct: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV Sbjct: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI Sbjct: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM Sbjct: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELDANDFKE Sbjct: 421 AGRNRTEFYKLLSRHELDANDFKE 444 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 680 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 369/444 (83%), Positives = 404/444 (90%), Gaps = 1/444 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S A LLLVDDDP LLKLLG+RL+SEG+ V TA SG E LR+L R+ +DLVISDLRMDE Sbjct: 3 SAHSASLLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDE 62 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ LF+EIQ+ QPG+PVIILTAHGSIPDAVAATQQGVFSFLTKPVD+DALY+AIDDAL Sbjct: 63 MDGLALFSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDAL 122 Query: 122 EQSAPAT-DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 QS P D+ WR+A VTRSPLMLRLLEQAR+VAQSDVSVLINGQSGTGKE+ A+AIH A Sbjct: 123 AQSMPQGGDDAWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARAIHRA 182 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPR K FIAINCGALPEQLLESELFGHA+GAFTGAVS+REGLFQAA GGTLFLDEIGDM Sbjct: 183 SPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDEIGDM 242 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQVKLLRVLQERKVRPLGSNRD+DI+VRIISATHR+LPKAM GEFREDL+YRLNVV Sbjct: 243 PLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYRLNVV 302 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SL++PAL +R EDIPLLA HLLRQAAERHKP VR+FS+ AMK LM+ASWPGNVRQLVNVI Sbjct: 303 SLRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQLVNVI 362 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALT++PVI +ALVEQAL+GENTALPTFVEAR+ FEL+YLRKLLQITKGNVTHAARM Sbjct: 363 EQCVALTTAPVIGEALVEQALQGENTALPTFVEARHHFELHYLRKLLQITKGNVTHAARM 422 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELD NDFKE Sbjct: 423 AGRNRTEFYKLLSRHELDPNDFKE 446 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 659 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 174/455 (38%), Positives = 259/455 (56%), Gaps = 18/455 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + + L L GYSVVTA SG E L +N + V+ D+RM EMDG+++ Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++ PG+PVI++TA+ + A + G F ++ KP++ D L ++ A + P Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 128 TDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 E ++ SP M + + +A SDV+VLI G+SGTGKE+ A+AIH S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR KPF+ I+C A+PE LLESELFGH +GAFTGA + + G F+ A+GGT+FLDEIGD+ Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR LQE+ +G ++VRII+AT++DL + + G FREDLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 +K+P L ER EDI LL ++ + + + V + L+ +WPGNVR+L NV E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 362 QCVALTSSPVISDALVEQAL------------EGENTALPTFVEARNQFELNYLRKLLQI 409 + V + VI+ + + L E+ + E + E + + + L+ Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 +GN T AR G +RT Y + + + K+ Sbjct: 425 YRGNKTAVARALGMSRTTLYAKMKELGIADPENKD 459 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 186/461 (40%), Positives = 267/461 (57%), Gaps = 23/461 (4%) Query: 1 MSHKPA--HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 M+ K +LLVDDDPG+L L L+ GY TA GAE + L+++ D+V++DL Sbjct: 1 MATKKKMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLN 60 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M MDGM + +QK ++LT GSI ++V A + G F ++TKPV D L ++ Sbjct: 61 MPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVS 120 Query: 119 DALEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 A++ + E V SP + R+ E VA +D +VLI G+SGT Sbjct: 121 TAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGT 180 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+AIH SPR P + INCGA+PE+LLESELFGH +GAFTGA R G F+ A Sbjct: 181 GKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVAN 240 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGT+FLDEIGDM LQVKLLRV+QE+ +GS R + +++RI++AT++DL +A+ + E Sbjct: 241 GGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKE 300 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRLNV+ +++P L +R DIPLL + + + A + V+ S AM LM Sbjct: 301 FREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHH 360 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----------FVEARNQ 397 WPGNVR+L NV+E+ + L+S I + + G ++ P F A + Sbjct: 361 WPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +E N + + L+ T AA++ NRT + + R + Sbjct: 421 YEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 180/448 (40%), Positives = 269/448 (60%), Gaps = 12/448 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +LL+DD+P LK+L LT EGY V TA+ G GL L D++I+DL++ Sbjct: 1 MSTKK-RILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G+ + +++ P +PV+++TA+GSI +AV A + G F++LTKPVD D L + + Sbjct: 60 DITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNV 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+S + + +V +S M L VAQ + +VL+ G++GTGK Sbjct: 120 FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH A + PF+ I+C A+PE LLESELFGH+RGAFTGA ++G + A GG Sbjct: 180 ELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ K LR LQE+++ LG R ++VRII+AT+RDL +A G++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+S++IP L ER +DIP L NH L + ++ ++ + + M+ M WP Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-TFVEARNQFELNYLRKLLQI 409 GNVR+L NVIE+ V L I+ + + L+ + P T + E + + L+ Sbjct: 360 GNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLMEMEKRLIVQTLEK 419 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHEL 437 T+ N + AAR G +R + + H L Sbjct: 420 TEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 653 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 22/451 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ + L L EGY V T+ G GL ++ +E LVI DL+M EMDG++ Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + + P +P+I++TAHG+I A+ A + G ++TKP D D L I AL + Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHL 125 Query: 127 ATD--------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + + IV S + + VA S+ +VL+ G+SGTGKEI A +IH Sbjct: 126 QEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIH 185 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R KPF+ INC ALPE LLESELFGH +GAFTGAV+ + G F+ A GTLFLDEI Sbjct: 186 QLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEIT 245 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 +MP +QVKLLRVLQE++ +G I I+VR+I+AT+RD + + +G FREDL+YRLN Sbjct: 246 EMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLN 305 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+ + +P L ERTEDIPLLA H +++ + + S +AM L++ WPGN+R+L N Sbjct: 306 VLPIHLPPLRERTEDIPLLAMHFIKKFNPSQE---QRMSPEAMGLLISYEWPGNIRELQN 362 Query: 359 VIEQCVALTSSPVISDALVEQALE-----------GENTALPTFVEARNQFELNYLRKLL 407 VIE+ + L I + + ++ G P + ++ E + K L Sbjct: 363 VIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKAL 422 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + GN T AA++ G R+ ++ L Sbjct: 423 EKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 178/438 (40%), Positives = 266/438 (60%), Gaps = 8/438 (1%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L +DD+ LK + L EGY+V T+ + EG+ VL ++ ++ D R+ MDG+ Sbjct: 2 ANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L ++ + +P ++LTA+G+I AV A + G + +L KPVD + L I +A+E+S Sbjct: 62 DLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSK 121 Query: 126 ----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 E I+ +S + + ++VA+S+ +VLI G+SGTGKE+ A+AIH S Sbjct: 122 GIQKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNS 181 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R SKPFI ++C +PE LLESELFGH +GAFTGA + GL + A GT+FLDEIG++P Sbjct: 182 LRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELP 241 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR LQE++++ +GS + I ++VR+ISAT++DL KA+ G FREDLY+RLNVV Sbjct: 242 MLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVR 301 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 + +P L ER EDIPLL NH L + ++ + + + M L+ WPGN+R+L NVIE Sbjct: 302 INLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIE 361 Query: 362 QCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGNVTHAA 418 + V L+ S +IS + + ++ ENT E + E + K L T N T AA Sbjct: 362 RAVVLSPSGLISIKHLPRRIQ-ENTGWTIIKENTFNLLEVEKALILKALNSTGWNQTKAA 420 Query: 419 RMAGRNRTEFYKLLSRHE 436 + G +R + + H Sbjct: 421 EILGISRKQLRTKMKHHG 438 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 178/455 (39%), Positives = 259/455 (56%), Gaps = 20/455 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + ++L +G+ A +G L + D+V+ D+RM EMDG++ Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 E++ + PVI++TA+ + AV A + G F ++ KP D D L + AL+ + Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSM 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R I+T SP M+ + + +A S SVLI+G+SGTGKE+ A+A Sbjct: 126 KKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R PFI +NC ALPE LLESELFGH +GAFTGA + R+GLF+ A GTL LDE Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+MP LQ KLLR+LQER+ +G ++ I +++RII+AT+RDL + G FREDL+YR Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ L +P L +R EDI LLANH L++ + ++ + AM L SWPGN+R+L Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALE------GENTALP----TFVEARNQFELNYLRKL 406 NVIE+ V + S P+I + + GE P E + E + ++ Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEV 425 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 L+ +GN T A M G +R L + +D D Sbjct: 426 LEQQEGNRTRTALMLGISRRALMYKLQEYGIDPAD 460 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 171/453 (37%), Positives = 266/453 (58%), Gaps = 18/453 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + K LG L EGY V T +SG E +R+L+ + +V+ D+ + +DGM+ Sbjct: 4 SILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGME 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + I+ + P +PV++++ HG+I AV AT+ G F F+ KP+ + + + AL+ S Sbjct: 64 VLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSRL 123 Query: 127 ATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + + + +SP ++ L+E +VA ++ +LI G++GTGKE+ A+AIH Sbjct: 124 EEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHR 183 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R KP + +NC A+PE+L+ESELFGH +GAFTGA + G F A GT+FLDE+ D Sbjct: 184 QSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVAD 243 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q K+LR+LQE+K +G N+ I ++VR+++AT++DL K M G FR+DL+YRLNV Sbjct: 244 MSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNV 303 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + LK+P L R EDIPLLA L A + + DA+ LM SWPGNVR+L N Sbjct: 304 IPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELKNF 363 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEARNQFELNYLRKLLQ 408 IE+ +T+S VI+ + + P +F EA+ FE Y+ + L+ Sbjct: 364 IERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRKLR 423 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 GN++ A G R+ +K + + L++ + Sbjct: 424 EFDGNISKTAESIGLERSNLHKKIKAYGLESKN 456 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 191/441 (43%), Positives = 274/441 (62%), Gaps = 7/441 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L+VDDD +L L GY+V A SG E L + DLV+ D+RM Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ + P +PV+I+TA S+ AV A + G +L KP+D D L + ++ + Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + E + +V +SP M +LL + +VA SD +VLI+G SGTGKE+ A+ Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + + G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV+++ P+L +R EDIPLLA H L++ A R++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV--EARNQFELNYLRKLLQITKGN 413 L N IE+ V L + IS+ + A+ + L + + E + L+ T GN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGN 420 Query: 414 VTHAARMAGRNRTEFYKLLSR 434 T AAR G R LSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 181/458 (39%), Positives = 269/458 (58%), Gaps = 27/458 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A LL+VDDD G L +L LT GY V A GAE + ++ D V+ D+RM M GM Sbjct: 3 AELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGGM 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + + I++ P +PV+I+TA+ S+ AV+A + G + +LTKP+D D + ++ AL+ Sbjct: 63 EALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHLR 122 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 A + I+ +SP M L +VA ++ +VL+ G+SGTGKE+ A+ Sbjct: 123 LARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAK 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR P +A+NC AL E LLESELFGH +GAFTGA REG F AA+ G++FLD Sbjct: 183 ALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +Q KLLRV+QER+++ +G +R + ++VRI++AT+RDL K + G FREDLYY Sbjct: 243 EIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++ +P L ER +DIPLLA H L + AE+++ ++ F+ AM L+ WPGNVR+ Sbjct: 303 RLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVRE 362 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-----------------ARNQF 398 L N +E+ V L+ +++ + + E A + Sbjct: 363 LENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDV 422 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 E + L+ T GN + AAR+ G R +K L ++ Sbjct: 423 EREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 189/443 (42%), Positives = 270/443 (60%), Gaps = 9/443 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+VDDD +L L GY V A +G + L + + DLV+ D+RM Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L + +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + + + +V SP M LL LVA SD +VLI+G+SGTGKE+ A+ Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ +P + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + ++ G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++ +P L R EDIP LA + L++ AER++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLLQITK 411 L N +E+ V L + IS+ + A+ G A + + E + L+ T Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALERTG 420 Query: 412 GNVTHAARMAGRNRTEFYKLLSR 434 GN T AAR G R LSR Sbjct: 421 GNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 645 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 182/479 (37%), Positives = 276/479 (57%), Gaps = 38/479 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + +L+VDD+ L ++L +L+ +GY V TAE G EGL L +DLVI+DLRM Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DGM L + P PV++LTAHG++ +AV A + G F ++TKP D++ + + A Sbjct: 61 KVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKA 120 Query: 121 LEQSAPATDERWRE-------------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 L A+ + R+ I+ SP + L VA + +VLI+G+SG Sbjct: 121 LRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESG 180 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+A+H S R +PFI +NC A+P+ L+ESELFG+ RGAFTGAV+++ G F+ A Sbjct: 181 TGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELA 240 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGTLFLDEIG++P +QVKLLRVLQE + +G + I ++VR+++AT+RDL + +A G Sbjct: 241 SGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAG 300 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FREDL+YRLNVV + +PAL +R DIP L H + + R K + + +A++RL + Sbjct: 301 TFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASH 360 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA-----------------LPT 390 +WPGN+R+L NV+E+ + I + + + G T+ P+ Sbjct: 361 AWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPS 420 Query: 391 FVEARNQ--------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + + E + + + L+ T GNVTHAAR+ +R + L D Sbjct: 421 TPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNLRERD 479 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 190/438 (43%), Positives = 285/438 (65%), Gaps = 6/438 (1%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDDD +L L+ L+L + GY++ T S E L + E DL++ D M E+ G++ Sbjct: 4 RILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 +++ PVI++TA+GS+ DAV A ++G F ++TKP++ + L ID ALE S Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDL 123 Query: 127 ATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 + ++ I+ SP M ++LE A+ +A D +VLI G+SGTGKE+ A IH S Sbjct: 124 KKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNS 183 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R +PFIAINCGA+P +LLESELFG+ +GAFTGA ++++GL + AEGGTLFLDEIG++P Sbjct: 184 LRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELP 243 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQVKLLRVLQE +++P+GSNR I+VR I+AT+RDL K + G+FREDLYYR+NV+ Sbjct: 244 LDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIP 303 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 + IP L ER EDI LA + + + R+ + S A ++L+ + GNVR+L N+IE Sbjct: 304 IHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIE 363 Query: 362 QCVALTSSPVISDALVEQALE-GENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 + V T I+D V + + L F EA+ +FE +YL+ LL+ T N++ A+++ Sbjct: 364 RAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNISKASKI 423 Query: 421 AGRNRTEFYKLLSRHELD 438 AG R + Y+++ R+ ++ Sbjct: 424 AGITRAQIYRMIKRYGIE 441 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 169/454 (37%), Positives = 254/454 (55%), Gaps = 20/454 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+VDD+ + + L LT E Y V TA +G + L + K D++I+D+RM E DG Sbjct: 3 KKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 L +I+ +PVI++TA G+ A+ A + G F ++ KP D D I A+ QS Sbjct: 63 FGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQS 122 Query: 125 --------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A I+ SP M + + VA S+ +VLI G+SGTGKE+ A+A Sbjct: 123 DTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R + PFI +NC LP+ LLESELFG+ +GAFTGA S + G F+ A GT+F DE Sbjct: 183 IHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ Q KLLR +QE++ +G + I +NVRI++AT+R L +++ GEFREDL++R Sbjct: 243 IGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV+++IP L +R EDIPLL H L + + ++ FS +A+K L+ WPGNVR+L Sbjct: 303 LNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ----------FELNYLRKL 406 NV+E+ + + +I ++ L + PT +E ++ E + K Sbjct: 363 ENVVERSIIMARGAIIVPEDIQ--LGATVSQQPTELEILDENLSLKQIISDVERKVILKA 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 L+ T A++ NR Y + ++ N Sbjct: 421 LEENNWCRTTVAKVLKINRRSLYAKMKELGIEEN 454 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 159/457 (34%), Positives = 263/457 (57%), Gaps = 25/457 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+ G+ ++L L EG+ + A + + L+++ E D V+ D+R+ + DG+ Sbjct: 2 SKVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++++ +PVI++TA G+ A+ A +QG +L KP++ D L A+ +++ Sbjct: 62 EVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQR 121 Query: 126 PA-----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + ++ + +S M + + V SD++VLI G+SGTGKE+ A Sbjct: 122 LVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + IH+ S R+S+PFI INC +PEQL+ESELFGH +G+FTGAVS + G F+ A G +FL Sbjct: 182 RTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFL 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++P Q KLLRVLQE++ +G + I+++VRI++AT+R+L + G+FREDLY Sbjct: 242 DEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLY 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV++K+P L ER EDI LL N+ +++ A ++ + S +AM +WPGNVR Sbjct: 302 YRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEG--------------ENTALPTFVEARNQFEL 400 ++ NV EQ V + + V+ + G + + + + E Sbjct: 362 EIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEK 421 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + K L N + A+ G NR Y + ++L Sbjct: 422 QVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 183/464 (39%), Positives = 272/464 (58%), Gaps = 27/464 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+H +LL+VDD+P L LL L+ G V TA +G L+VL +E +DLVISD RM Sbjct: 1 MTH---NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG QL EI++ P +PVI++TA+ ++ +AV + + G + ++ KP D D L + A Sbjct: 58 GMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKA 117 Query: 121 LE----------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ A + + +++V SP R+L+ V +S+ ++L+ G+SGTGK Sbjct: 118 LQFRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH R KPF+A+NC A+PE LLESE+FGH +GAFTGAV++R G FQ A+ G Sbjct: 178 EMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GDMP LQ K+LR LQER + P+G R+ ++VR+I+AT+++L +A+A EFR Sbjct: 238 TLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNV + +PAL ER EDI LLA H + FS +A++ + + +WP Sbjct: 298 EDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--------------LPTFVEARN 396 GN+R+L N +E+ + + VI + + L G A Sbjct: 358 GNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALA 417 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + E Y+ LQ + G AA++ G + F+ L + + + Sbjct: 418 EVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVD 461 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 179/459 (38%), Positives = 266/459 (57%), Gaps = 22/459 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K +L+VDDD L ++L L EGY V+TA SG EGLR+ LV++DL+M M Sbjct: 7 KTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMG 66 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G QL E+++ P VI++TA G++ AV A + G + F+TKP +++AL + AL+ Sbjct: 67 GFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDM 126 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + R +I+ SP M + VA +D +VLI G+SGTGKE+ Sbjct: 127 QGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELV 186 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIHN S R + PF+AINC A+P LLESELFGH +GAFTGAV ++EG F+ AE GTLF Sbjct: 187 ARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+G++P LQ KLLR LQE++V+P+G I ++VR+++AT+ DL +A+A G FREDL Sbjct: 247 LDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRL+V+ + +P L ER EDIPLL H A +H FS + + + WPGNV Sbjct: 307 FYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGNV 362 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQFELNYLRK 405 R+L N +E+ + + ++ I + + + + LP + Q E + + Sbjct: 363 RELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVVE 422 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L+ N + AAR R + ++ + + K+ Sbjct: 423 ALERNNWNQSSAARFLRIPRHTLIYRMEKYSITTPERKK 461 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 190/441 (43%), Positives = 268/441 (60%), Gaps = 7/441 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG+ EI+ + P +P++I+TA S+ AV A + G +L KP+D D L + ++ A Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 121 LEQSA-----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + + + ++ SP M LL + +VA SD +VLI+G SGTGKE+ A+ Sbjct: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ I ++V +I+ATHRDL + ++ G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++++P+L +R EDIPLLA+H LR+ AER++ V+ F+ AM L+ WPGN+R+ Sbjct: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE--ARNQFELNYLRKLLQITKGN 413 L N IE+ V L + IS+ + A+ E E + L+ T GN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGN 420 Query: 414 VTHAARMAGRNRTEFYKLLSR 434 T AAR G R LSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 173/450 (38%), Positives = 270/450 (60%), Gaps = 10/450 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + +L+VDD+ + + LG L +GY V G + L E+ ++I DL+M Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+Q+ +K+QP + V+I+TA+ ++ AV A + G + +L KP D + L + Sbjct: 61 GMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKI 120 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + Q + + E ++++SP M + E AR A+S+ ++L+ G+SG+GK Sbjct: 121 VSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H SPR PF+A++C AL E LLESELFGH +G+FTGA+S R+G F+AA GG Sbjct: 181 EVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GD+ LQ+ LLRVL+ER+ +G N I+++VRII+AT+RDL +A G+FR Sbjct: 241 TLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + +P L ER EDIPLL + + + + K + S DAM LM WP Sbjct: 301 EDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L NV+E+ + + VI + + E + P + + + E ++ +L Sbjct: 361 GNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLASLEEVEKRHVAAVLAHA 420 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 GNV+ +AR+ G +R Y + ++ L + Sbjct: 421 NGNVSQSARILGIDRVTLYNKMRKYGLRRD 450 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 162/460 (35%), Positives = 258/460 (56%), Gaps = 23/460 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 ++L+VDD+ + +L LT EGY V TA +GA+ L ++ ++ D ++ D++M Sbjct: 5 DEPKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPR 64 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ A + P VI+++A+G+I AV A + G + +++KP D + A+ A Sbjct: 65 MDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKAS 124 Query: 122 EQSAPATDERWREA-------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 E+ + I+ +S M + + VA D +VL+ G+SGT Sbjct: 125 ERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGT 184 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+++H SPR I +NCG +PE LLESELFGH +GAFTGA N+ GL + A Sbjct: 185 GKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAH 244 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GTLFLDEIG++PA LQVKLLR+LQ+R++RP+G++ I++RI++AT R+L +A G Sbjct: 245 KGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGV 304 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL+YRLNV+ + +P L +R EDIPLL +++ ++ + + A+ RL+ + Sbjct: 305 FREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHT 364 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP----------TFVEARNQF 398 WPGNVR+L N+IE+ V L I+ + ++ P + A+ F Sbjct: 365 WPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIF 424 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + K L T GN T +++ + + + ++ Sbjct: 425 EKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 636 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 172/460 (37%), Positives = 263/460 (57%), Gaps = 27/460 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L++DD+ L K+L L +G+ V AE+G +GL ++ D+V++DL M ++ GM Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGM 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--- 122 ++ I+ P +PVII+TAHG++ AV A + G F ++TKP D+ L + A + Sbjct: 62 EVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNE 121 Query: 123 --QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + + D + R AI+ S + + + VA + +VLI G+SGTGKE+ A A+H A Sbjct: 122 SARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGA 181 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R KPFI INC A+P LLESELFG+ RGAFTGAV+++ G F+ A+ GTLFLDEIG++ Sbjct: 182 SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLLR +QE + +G + ++VR+++AT+RDL + G FR+DLYYRL VV Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + +PAL ER D+P+LA H + + R + + DAM L +WPGN+R+L N+I Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLI 361 Query: 361 EQCVALTSSPVISDALVEQALEG--------------ENTALPTFVEAR--------NQF 398 E+ + P+I+ + + + + +PT + Sbjct: 362 ERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAEL 421 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + + K L+ T GNVT AAR+ +R + L Sbjct: 422 ERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGLR 461 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 261/466 (56%), Gaps = 28/466 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ +++ L + Y+V +A G E L+ ++ D++I D+ M Sbjct: 1 MS---ARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +MDG+++ +++ P + VI++T I AV A + G F +L+KP D D L ++ A Sbjct: 58 KMDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRA 117 Query: 121 LEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + R E I+ SP M + A ++ +VLI G+SGTGK Sbjct: 118 LERRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R +PF+ ++C L E LLESELFGH +G+FTGAV+N+ G+F A G Sbjct: 178 EMIARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE G++P Q KLLRV+QER+ RP+G+ + NVR+I+AT++DL +A G FR Sbjct: 238 TLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYR+NV + PAL ER +DIP LA H L+ V S AM LM WP Sbjct: 298 EDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGE---NTALPTFVE------------AR 395 GNVR+L N +++ V L+S +I A + ++ + +P + + Sbjct: 358 GNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSV 417 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + E ++++ L+ NVT +A G RT F L+ ++ + D Sbjct: 418 EEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNIRVRD 463 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 164/450 (36%), Positives = 251/450 (55%), Gaps = 15/450 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS KP +L DD+ ++ L GY+V SG E ++ + D+ I D+ M Sbjct: 1 MSKKP-TILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++ +++ ++P VIILT GSI +AV A + G + +LTKP L + A Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRA 119 Query: 121 LEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + + + +++ SP + + + A SDV+VLI G+SGTGK Sbjct: 120 LEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S R KPF+ +NC L E LLESELFGH +GAFTGA +R GLF+ AEGG Sbjct: 180 ELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++ Q KLLRV+Q ++R +G NR I ++ RII+ATH++LP + G FR Sbjct: 240 TLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV++L++P+L ER +D+ L H L++ + +A+ + WP Sbjct: 300 EDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--LPTFVEARNQFELNYLRKLLQ 408 GN+R+L N IE+ V L +IS + + G A ++ E N++ ++L+ Sbjct: 358 GNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEVEKNHIIQVLK 417 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + AA+ G + Y + + +D Sbjct: 418 EKNWHKPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 167/456 (36%), Positives = 262/456 (57%), Gaps = 24/456 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+++D+ + + L L + GY V TAE+G + L +L++ +++++DL + + G+ Sbjct: 16 SQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGI 75 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++ P VI++T GS AV A ++G F ++TKP+ + L I A+E+S Sbjct: 76 EILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSR 135 Query: 126 PATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + + I+ S M + + V +D ++LI G+SGTGKE+ A+ Sbjct: 136 LVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAK 195 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH R KPF+AINCGA+P +LLESELFGH RGAFTGAV+++ G FQ A GT+FLD Sbjct: 196 AIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLD 255 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG MP LQ+KLLRVLQE++V +GS++ I ++VR+ISAT+ +L + + +G FR DLYY Sbjct: 256 EIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYY 315 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ER EDI LLA + L++ + + + AM L WPGNVR+ Sbjct: 316 RLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRE 375 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG-------ENTALPTFVEA-------RNQFELN 401 L NVIE+ V LT S I + + + G + P E+ E Sbjct: 376 LENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERC 435 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 ++ + ++ G AA + RT + + R + Sbjct: 436 LIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 169/449 (37%), Positives = 252/449 (56%), Gaps = 13/449 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+VDD+ + L EGY V ES E L + + DL + D++M Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMR 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG++L ++ ++ PG+ VI++T + S+ AVA + G + ++TKP+D + + A Sbjct: 61 GTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKA 120 Query: 121 LEQSAPATDE-RWREAI--------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L + R +E I V RS M ++ + VA +D +VLI G+SGTGKE Sbjct: 121 LAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S R P + ++CGAL E LLESELFGH +GAFTGA ++G F+ AEGGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGD+ Q LLRVLQER++ +G N+ I ++ RI++AT++DL K + G FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNV +++P L +R EDIPLL NH ++ AE+ V ++ AM L WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDAL----VEQALEGENTALPTFVEARNQFELNYLRKLL 407 NVR+L N +E+ + + P + + V+ A +T + E ++ +L Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHE 436 T N T AA M +R + + R+ Sbjct: 421 DETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 170/452 (37%), Positives = 257/452 (56%), Gaps = 19/452 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ H+L+ DDDP + +L L EGY V A G + + + + DL++ D+RM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG+++ +++ +P+I++TA G+ + A Q G + ++TKP D D + + I+ Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 121 LEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 EQ +T R R I+ SP+M + + LVA SD +VLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S + P + +NC ALPE LLESELFGH +G+FTGA R+G F+ A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG+M Q KLLRVLQER+ +G + I ++ R+I+AT++ L + +A G+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + +P L ER EDIPLL ++ L++ + S +A+K LM WP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALV--EQALEGENTALP-------TFVEARNQFELN 401 GNVR+L N IE+ V L VI+ + Q G N L + EA E Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + + L+ KG+ AA + + +E + L Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 632 bits (1631), Expect = e-180, Method: Composition-based stats. Identities = 170/445 (38%), Positives = 276/445 (62%), Gaps = 13/445 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ LK L L EGY V +SG E L+++ +++ D+V++D++M+++DG + Sbjct: 3 KVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------ 120 + + + + P VI++T + ++ +AV A +QG F ++ KP D + + I +A Sbjct: 63 ILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKL 122 Query: 121 ---LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 ++Q D + I+T++ ML+LLE AR +A +D +VLI G+SGTGKE+FA+ I Sbjct: 123 KKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYI 182 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R PF+A+NCGA E+LL +ELFGH +GAFTGA + ++GL + A G+LFLDEI Sbjct: 183 HLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEI 242 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 +M +Q KLLRV+QER+ LG+ I ++VR I+AT+RD+ + + G+FREDLYYRL Sbjct: 243 TEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRL 302 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV+++IP L ER +DIPLL + ++ + K + S +A+ L+ +PGNVR+L Sbjct: 303 NVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELE 362 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLLQITKGN 413 N+IE+ V L +S I + Q L+ + T E + + E Y++ +L+ N Sbjct: 363 NIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGNN 422 Query: 414 VTHAARMAGRNRTEFYKLLSRHELD 438 T AA++ G +R ++ L + ++ Sbjct: 423 KTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 163/451 (36%), Positives = 250/451 (55%), Gaps = 17/451 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +++V+DDP + + L + GY + + GA+ L +L+ E D+ I DL++ +DG+ Sbjct: 4 KIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLT 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I+ + P VII+TA + AV A + G F ++ KP + L I+ L+ Sbjct: 64 LLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFRTL 123 Query: 127 ATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ++ E IV+ S +M + ++ VA++DV VLI G+SGTGKE+ A A Sbjct: 124 EKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 I S R KP+I INC A+PE L ESELFG+ +GAFTGA ++G F+ A GGT+F DE Sbjct: 184 IQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP LQ KLLRV+++ V LG I INVR I AT ++L + + +FREDL+YR Sbjct: 244 IGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +NV+ + IP L ER EDIP+L L+ +E++ S A + L++ +PGNVR+L Sbjct: 304 INVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVREL 363 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP-------TFVEARNQFELNYLRKLLQI 409 + IE+ + L+ VI + + ++ + E FE N + K LQ Sbjct: 364 KHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKALQE 423 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 T AA+ G +R ++ + + ++ N Sbjct: 424 CGWKKTEAAKKLGISRKALWEKIKFYGIEPN 454 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 631 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 171/453 (37%), Positives = 272/453 (60%), Gaps = 21/453 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ LL L EGY +TA SG E +++L VDLV++D++M MDGM+ Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGME 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I+ P +PV+++TA+G++ +AA ++G +S++ KP + L + AL Sbjct: 63 LMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRV 122 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R + I+ +SP M+ + + VA ++ +VLI G+SGTGKE+ A++ Sbjct: 123 VQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKS 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R P++A+NC AL E +LESELFGH +GAFTGA + ++G F+ A+GGTLFLDE Sbjct: 183 IHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ + LQVKLLRVLQE+ +G + I++++R+I+AT+RDL K + FREDL+YR Sbjct: 243 IGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAE--RHKPFVRAFSTDAMKRLMTASWPGNVR 354 LNV+ +++P L ER +DIPLL +H L++ A + VR D + +WPGNVR Sbjct: 303 LNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENT------ALP---TFVEARNQFELNYLRK 405 +L NVIE+ + L +S IS + + L + +P T E + E +++ Sbjct: 363 ELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKR 422 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + ++ +HAA++ G ++ + + + LD Sbjct: 423 AMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 180/442 (40%), Positives = 259/442 (58%), Gaps = 11/442 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LLVDDD G +L + L GY V+TA G E L L + K+DL++ D++M +DG+ Sbjct: 3 KILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLA 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ--- 123 + + + +PVI++TA S+ +A+ A ++G F ++TKPVD D L+ AI AL Q Sbjct: 63 TLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKIS 122 Query: 124 ------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + P D ++ E I+ S M L Q L+A SD ++L++G+SGTGKE+ A AI Sbjct: 123 PPLSPGTEPQADSKFPE-IIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAI 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R I INC AL E LLESELFGH GAFTGA ++GLF+ A+ GTLFLDEI Sbjct: 182 HRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEI 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM QVK+LRVLQE + +G N I +NVRII+A+HR+L K + G FR+DL++RL Sbjct: 242 GDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRL 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +VV L +PAL ER DIP+LAN L ++++ ++ FS +A+ LM WPGN+R+L Sbjct: 302 SVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELE 361 Query: 358 NVIEQCVALTSSPVISD-ALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 N IE+ V L I+ L Q + + + E +++ L + N + Sbjct: 362 NSIERGVILCLGEQITAHELPPQFFRNRSPGELSSRDTLRDVEKRAIQQALARSGFNKSA 421 Query: 417 AARMAGRNRTEFYKLLSRHELD 438 A+ G R + + L+ Sbjct: 422 TAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 172/448 (38%), Positives = 255/448 (56%), Gaps = 13/448 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L VDD+ + L L++ G+ V A G + LR N + D+V+SDL M E DG+ Sbjct: 4 ARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGL 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS- 124 L +++ P PV+ LT G+I AV + ++G + F+ KP+D L ID ALE+ Sbjct: 64 WLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKKE 123 Query: 125 --------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ++ +S M +++E VA S SV I+G+SGTGKE+ ++A Sbjct: 124 TMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +HN S R KPFIAINC ++P L+ESELFGH RGAFTGA R G+F+ A GGTLFLDE Sbjct: 184 VHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P LQ KLLRVL+E K+R LG +I+++VR++ AT+RDL + + G FREDLY+R Sbjct: 244 LGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV + +P L ER +D+P+L H + + V +AM+ L WPGN+R+L Sbjct: 304 LNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIREL 363 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFV----EARNQFELNYLRKLLQITKG 412 N +E+ V L +I+ + + G++ TF + + E Y+ LQ Sbjct: 364 RNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQRNGN 423 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAN 440 N A + G + Y L+R+ +A Sbjct: 424 NKARTAEVLGVSEKTLYNKLNRYAAEAR 451 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 204/451 (45%), Positives = 280/451 (62%), Gaps = 13/451 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDDD GL L+ RL GY V AE G E L E + DL+M+EMDGM Sbjct: 5 KILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMV 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE---- 122 L ++ VQP +PVIILTA+G+I AV AT++G + F+TKP + L ++ ALE Sbjct: 65 LLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVGSL 124 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + I+ S M ++L Q +A +D +V + G+SGTGKE+ A+ Sbjct: 125 RMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKV 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R+ PF+AINCGA+PE LLESELFGH +GAFTGA ++GL Q AE GTLF+DE Sbjct: 185 LHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++ LQVKLLRV Q+ + P+G + + ++ R+++AT++DL KA+ G+FREDLYYR Sbjct: 245 IAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V+ + +P L ER EDIPLLA+H L+ + FS DAM RLM WPGNVR+L Sbjct: 305 IHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDALV---EQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 NV+E+ V L I + +A+ T LP AR++FE YL ++L TKGN Sbjct: 365 ANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERAYLIQVLHSTKGN 424 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 V+ AA AGR R EFYKLL +++LD FKE Sbjct: 425 VSRAAAKAGRYRAEFYKLLRKYDLDPATFKE 455 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 168/458 (36%), Positives = 272/458 (59%), Gaps = 21/458 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMDEM 62 K +L+V+D + + L + EGY V SG ++ L+ DLV++DL+M ++ Sbjct: 3 KNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKV 62 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G+++ ++ P VI++TA+G+I AV A ++G + ++TKP + + +ALE Sbjct: 63 NGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALE 122 Query: 123 QSAPAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + ++ E I+ S +M+ +L+ V++++ +VLI G+SGTGKE+ Sbjct: 123 KKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKEL 182 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH PR+ PF+ INCGALPE L ESELFGHA+G+FTGAV + GLF A GT+ Sbjct: 183 IARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTI 242 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+ A QVKLLR LQ+ ++R +G N+ I ++VRII+AT+ +L +A+ +G FR+D Sbjct: 243 FLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKD 302 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YR+NV+ + +P L ER EDIPLL N+ L ++ K R FS AM L+ WPGN Sbjct: 303 LFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGN 362 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEG----------ENTALPTFVEARNQFELNY 402 +R+L N++E+ VAL+ + VI + G + T + VE ++ E N Sbjct: 363 IRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKNA 422 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + + GN T +++ G + T ++ + ++++ Sbjct: 423 IVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIKPQ 460 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 163/459 (35%), Positives = 256/459 (55%), Gaps = 25/459 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L L + VVTAESG + L ++ D+VI+D++M ++ G+ Sbjct: 3 KILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGID 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + +++ P V+++TA GSI +AV A + G F++L KP D + I+ A E + Sbjct: 63 ILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSL 122 Query: 127 ATDERWREA------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + ++ I+ SP+M ++L VAQS+ SV ING+SGTGKE+ A Sbjct: 123 VQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIA 182 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 QAIH S R+ PFI +NC A+PE L+ESE FGH +GAFTGA R G F+ A GTL L Sbjct: 183 QAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLL 242 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI ++P +Q KLLR +QE++ +G ++ I ++VR+IS ++RD+ A+A REDLY Sbjct: 243 DEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLY 302 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV + +P L +R EDI LA++ L + + + FS +++K+L+ +WPGNVR Sbjct: 303 YRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-------------ARNQFELN 401 +L N++E+ V +T++ I+ + N L T + E Sbjct: 363 ELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKR 422 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + LQ N T A + G + L+ + + Sbjct: 423 LIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMKNE 461 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 173/457 (37%), Positives = 260/457 (56%), Gaps = 21/457 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K AH+L++DD+ L +L L EGY+V L L+ +VD+V++D++M Sbjct: 1 MSEK-AHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G Q+ ++K P +PV+I+TA GSI AV + G F ++TKP D L +I +A Sbjct: 60 KVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E + R + IV RS + +L A S +VLI G+SGTGK Sbjct: 120 VELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH SPR PF+++NC AL +LESELFGH +G+FTGAV+ R G F+ A+GG Sbjct: 180 ELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEI ++ LQVKLLRVLQER+ +G +I++++R+++AT++DL + +G FR Sbjct: 240 TLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DLYYRLNVV + +P L ER EDIPLL H + + + + FST+A+ L WP Sbjct: 300 DDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT----------FVEARNQFEL 400 GN+RQL NV+E C+ L VI+ + + E + + + + E Sbjct: 360 GNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEA 419 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 +R+ L AA G +++ L ++ + Sbjct: 420 ALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 170/472 (36%), Positives = 262/472 (55%), Gaps = 40/472 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+ DD+ + +L L +G++V A+ G + L ++ DL I D++M M G+ Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA------ 120 L I++++ + V+I+TA S+ +AV A ++G + ++TKP D D + ++ Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREI 124 Query: 121 -----LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + + + I+ S M + + VA SD+++LI G+SGTGKE+ A+ Sbjct: 125 AGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R KPF+AINC A+P LLESELFG RGAFTGA ++G F+ A GT+FLD Sbjct: 185 AIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP LQ K+LRVLQE +V +G + I +NVRI++AT+++L + + + EFREDLYY Sbjct: 245 EIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + + L ER +DIP L + L + + + +AM L SWPGNVR+ Sbjct: 305 RLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALV--------EQALEGENTALPTFVEA------------- 394 L N I++ V L++ P++++A E A+ ++ +L VEA Sbjct: 365 LENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLD 424 Query: 395 --------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E +R +L+ T+ N AA + G NR K + E++ Sbjct: 425 KSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 157/451 (34%), Positives = 256/451 (56%), Gaps = 17/451 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+++D+ + L L + GY+V AE G EG+ ++ +++ D+V++D+R+ DG++ Sbjct: 3 KILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL----- 121 + ++K QP V+++T + + AV A + G F ++ KP + L ++ L Sbjct: 63 VLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAH 122 Query: 122 -----EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + E IV+ SP ML + ++ A++D SV+I G+SGTGKE+ A A Sbjct: 123 VEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +HN SPR KPFI +NC A+PE LLE+E+ G+ +GAFTGA+ ++G + A+GGT F DE Sbjct: 183 VHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM PLQ KLLRVL+ R +G + +++R I AT R LP + +G+FREDLYYR Sbjct: 243 IGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +NV+ + +P L ER +DIPLL + + + V + +AM+ L + +PGNVR+L Sbjct: 303 INVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVE-------QALEGENTALPTFVEARNQFELNYLRKLLQI 409 + +E V S VI+ + + AL+G +R + E + +L+ Sbjct: 363 KHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKK 422 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 T G AA+ G +R ++ L + +D + Sbjct: 423 TGGRKMAAAKALGISRETLWRKLKEYNVDTD 453 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 179/451 (39%), Positives = 260/451 (57%), Gaps = 13/451 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDD + + L G+ V AE GA + + E D+V++DLRM + Sbjct: 26 PTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTV 85 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DGM++ +Q+ P VI++TA+G+I AV A ++G + FL KP + + + ALE Sbjct: 86 DGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALE 145 Query: 123 QSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + E IV RSP M +L++ VA +D +VL+ G+SGTGKE+ Sbjct: 146 KRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKEL 205 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H S R+ KPF+ +NC A+ + LLESELFGHARGAFTGA R G+F+ A GGTL Sbjct: 206 VARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTL 265 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DEIG+ Q KLLR LQE ++R +G + + +NVRII+AT++DL +A+A FRED Sbjct: 266 FIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFRED 325 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNVV L+IP L ER ED+PLLA H L++ +R R + +A+ L+ WPGN Sbjct: 326 LFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPGN 384 Query: 353 VRQLVNVIEQCVALTSSPVISDALV--EQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 VR+L N+IEQ AL + I A V E A T +A E + L Sbjct: 385 VRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALARC 444 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 ++ AR G + T ++ + R ++A + Sbjct: 445 GNDLGRVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 167/451 (37%), Positives = 255/451 (56%), Gaps = 18/451 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS P +L+VDD+ + + L EGY V A +GAE L + +V++D+RM Sbjct: 1 MS--PQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +MDG+ L ++ +++TA S+ AV A + G +FL KP+D D + + Sbjct: 59 QMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKV 118 Query: 121 LEQSAPATDE-----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 LE+ + + R I+ SP + + + R A + +VLI G+SGTG Sbjct: 119 LEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTG 178 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ AQA+H SPR KPFI ++C AL E LLESELFGH +G+FTGA++ +EG F+ A+G Sbjct: 179 KELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADG 238 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIG++ +QVKLLRVLQ+R+ +G + + ++VRI++ATHRDL + G F Sbjct: 239 GTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRF 298 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVVS+ +P L +R D+P L NH L + ++ + VR + ++ L++ W Sbjct: 299 REDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGE-----NTALPTFVEARNQFELNYLR 404 PGN+R+L N IE+ V L +S + L G +T E + Sbjct: 359 PGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLAAIEREAIL 418 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + L++ +G+ + AA + G + + L + Sbjct: 419 RTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 21/453 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 AH+L+VDD+ +LG L S G+ V A++ L +L+ E++DL+ISDL+M M G+ Sbjct: 2 AHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +P I+LTA+ ++ A+ A + G F +L KP D + + +D AL+ S Sbjct: 62 DFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSK 121 Query: 126 PATDE---------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + +V SP M L Q VA + S+LI G+SGTGKE+ AQA Sbjct: 122 LQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR++K ++INC A E LLESELFGH RGAFTGA+ ++GL + ++GGTLFLDE Sbjct: 182 LHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+ P LQ KLLRVLQE+ R +G +I ++RII+ATHR+L + + G FREDLYYR Sbjct: 242 IGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVVSL +P L R EDIPLL+ L + + + S+ A L WPGNVR+L Sbjct: 302 LNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALE---------GENTALP---TFVEARNQFELNYLR 404 N++E+ + P + + Q E A+P E E ++ Sbjct: 362 QNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQ 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L +G AA + G +R+ L ++ L Sbjct: 422 AALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 628 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 251/465 (53%), Gaps = 27/465 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +L+VDD+ G+ L L EGY V AE+G EGL++ DL+ D+ + MD Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ ++ +PVI+++ HG+I AV A ++G + F+ KP+ + + + + ALE Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEY 120 Query: 124 SAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + + + S ++ L Q VA +D VLI G++GTGKEI A Sbjct: 121 YRLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 ++IH +S R KP +A+NC A+PE+L+ESELFGH +GAFTGA + + G F+ A GTLFL Sbjct: 181 RSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI DM Q K+LR+LQE+ +G ++ + ++VR+I+AT++ L +A G FREDLY Sbjct: 241 DEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V+ L +P L +R +D+ LL + + H F+ DA L+ WPGNVR Sbjct: 301 YRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPT------------------FVEARN 396 +L N +E+ + + S ++ A++ + F AR Sbjct: 361 ELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAART 420 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 FE +L LQ GN+T A G R+ Y+ L + + + Sbjct: 421 AFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQTPE 465 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 628 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 171/461 (37%), Positives = 262/461 (56%), Gaps = 22/461 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + K +L+ +DD L L +EGY + ++G + + +K +LVI+DL+M Sbjct: 11 TMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPN 70 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 DG++L ++ + P VI++T +G++ AV A + G F +++KP+ D + ++ AL Sbjct: 71 GDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRAL 130 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 ++ + ++ S M + + VA+SD +V+I G+SGTGKE Sbjct: 131 SYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKE 190 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S RN+ P I +NCGA+PE LLESELFGH +GAFTGA+ NR G F+ A+GG+ Sbjct: 191 LVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGS 250 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGDM LQVK+LRV+QE++ +G + I+ +VRII+ATH++L A+ FRE Sbjct: 251 IFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFRE 310 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YR+NV+ + +PAL ER DI +LANH L++ A+ K V F+ +A+ ++ WPG Sbjct: 311 DLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPG 370 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA------------RNQFE 399 NVR+L N+IE V + I + + +F E QFE Sbjct: 371 NVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQFE 430 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N L K L T G AA++ NRT + L R + + Sbjct: 431 KNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNISSE 471 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 165/454 (36%), Positives = 255/454 (56%), Gaps = 21/454 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +++VDDD + L L GY V +G + + + +E D++ D++M Sbjct: 1 MSVE--KIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDGM+ +++ + VI++TA+G+I AV A ++G + ++ KP D + I Sbjct: 59 GMDGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRV 118 Query: 121 LEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ + ++ E + +++ M ++ EQ + +AQS SVLI G+SGTGK Sbjct: 119 NERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH SPR KPFI +NC AL E LLESELFGH RGA+TGAV+ R G F+ A G Sbjct: 179 ELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDE+ ++ +Q KLLRVL+E + +G + I I+VRI++ T+RDL K + +G FR Sbjct: 239 TLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNVV + +P L ER EDIPLLAN L + + + V++ AM L +WP Sbjct: 299 EDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWP 358 Query: 351 GNVRQLVNVIEQCVALTSSP---------VISDALVEQALEGENTALPTFVEARNQFELN 401 GNVR+L N++++ V + SS +I E + ++ + ++ E Sbjct: 359 GNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKE 418 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + L+ T GN T AA + L+++ Sbjct: 419 LIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 163/454 (35%), Positives = 251/454 (55%), Gaps = 15/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L++DDD + +LL L S G++ G E ++L +++++DL+M Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 G+++ + P V+++T HG++ AV A ++G + ++ KP + D L + A Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + R + +V SP + +L E VA +VLING++GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ IH S R+ +PF+AINCGALPE LLESELFGH +GAFTGA ++ GLF+ + GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI M QVKLLRVLQE +G + +VR+I+A+ R L + +A G FR Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNVVSL++P L +R EDIPLLA+H L + ++ V+ + RL+ SWPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVI-SDALVEQALEGENTALPTFVE-----ARNQFELNYLRK 405 NVR+L N +E+ + + ++ L GE L T + E + K Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLIIK 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 LQ G+ A + G + ++ + ++E++ Sbjct: 421 ALQRANGHRGKTAELLGISPASLWRKIKKYEINT 454 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 180/452 (39%), Positives = 267/452 (59%), Gaps = 18/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+V+D+ L +++ L+L S G+ V A S EGL++++R D+V++DL++ MD Sbjct: 1 MKKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDR--ADMVLTDLKLPNMD 58 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + + I++ +PV+++TA G++ AV A + G FL KP D L Q +D ALE Sbjct: 59 GQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEV 118 Query: 124 SAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + R + IV RSP M + V S +VL+ G+SG GK++ Sbjct: 119 RALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLI 178 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH SPR +P + INC A+PE L+ESELFG+ +GAFTGA + + G F+ A+ GT+F Sbjct: 179 ARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVF 238 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGD+PA +QVKLLRVLQER+ LGSN I+VR+++AT++DL A+ +G FREDL Sbjct: 239 LDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDL 298 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVV L IP L ER DIP LANH + + A V + + M++LM WPGNV Sbjct: 299 YYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNV 358 Query: 354 RQLVNVIEQCVALTSSPVISDAL------VEQALEGENTALPTFVEARNQFELNYLRKLL 407 R+L NVIE+ + + + + +G + + +Q+E +R+ L Sbjct: 359 RELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREAL 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + GN + AAR+ G R L++ L++ Sbjct: 419 RRADGNKSQAARLLGLTRNALRYRLTQMGLES 450 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 168/463 (36%), Positives = 258/463 (55%), Gaps = 26/463 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+ DD+ L +L L GY V T ++G E L + D+ I D+RM Sbjct: 11 MTES-VRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMP 69 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DG+Q F EI K++P +P+I++TA GS AV A + G + ++ KP + D + + A Sbjct: 70 EVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRA 129 Query: 121 LEQSAPATDERWREA--------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 + + + IV S + + + VA S +VL+ G+S Sbjct: 130 IRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGES 189 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 GTGK + A+AIH AS R KPFI +NCG++PE LLESE+FGH +GAFT A + G F+ Sbjct: 190 GTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFEL 249 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 AEGGTLFLDEI +M LQVKLLRVLQE++ +G + NVRII+AT+RDL K ++ Sbjct: 250 AEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISE 309 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 FR+DLYYRLNVVS+ +P L ER EDI LLA++ L++ + F+ + + Sbjct: 310 KSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRN 369 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGE-----------NTALPTFVEAR 395 SWPGN+R+L N +E + ++++ VI + +++ E + + E Sbjct: 370 YSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLREVL 429 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + E ++ + ++ T GN T AA++ +R ++ + +D Sbjct: 430 LEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 625 bits (1614), Expect = e-178, Method: Composition-based stats. Identities = 172/500 (34%), Positives = 265/500 (53%), Gaps = 66/500 (13%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + +L L +GY V A G E L L +E++D+V++DL+M ++ G+ Sbjct: 3 KVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLG 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA- 125 L + P PVII+TAHG+I AV A ++G F ++TKP D+D L I+ A+ Sbjct: 63 LLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIK 122 Query: 126 ------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 A +E + IV S + + + VA + ++LI G++GTGKE+ A AIH Sbjct: 123 NHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHR 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR +I INCGA+ + L+E+ELFG+ +GAFTGA S + G F+ A+ GT+FLDEIG+ Sbjct: 183 GSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGE 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLL+VLQ++ +G + I ++VRII+AT+RDL K + G FREDLYYRLNV Sbjct: 243 IPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V +K+P L ER EDI L ++ L + ++ ++ ++ +WPGN+R+L N+ Sbjct: 303 VPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENL 362 Query: 360 IEQCVALTSSPVISDALVEQALEG-ENTALPTF--------------------------- 391 IE+ + LT IS V + ++ E+ LP Sbjct: 363 IERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVLMA 422 Query: 392 -----VEARNQFE--------------------------LNYLRKLLQITKGNVTHAARM 420 EA ++ E + K+L+ GN+THAA+ Sbjct: 423 RSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHAAKR 482 Query: 421 AGRNRTEFYKLLSRHELDAN 440 G +R + ++ L Sbjct: 483 LGFSRKGLQIKMVKYNLRKK 502 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 162/446 (36%), Positives = 263/446 (58%), Gaps = 15/446 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMDEMDGM 65 +L+VDDDP L ++ L S+GY+ +GA+ + ++++ +V++D M EMDG+ Sbjct: 3 KILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDGI 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 QL ++I+++ + VI++T++G++ AV A + G ++TKP +D L I+ L+ Sbjct: 63 QLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQMQR 122 Query: 126 PATD-ERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + +R R I+ SP + ++ + V+ ++ ++LI G++GTGKE+ A+ Sbjct: 123 LEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAK 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S RN+ F+ ++C +L E LLESELFGH +GAFTGA +R G F+ A+ GT+FLD Sbjct: 183 AIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +Q KLLRVLQ+ + +GS+ I ++VRII+AT+ DL + +G FR DL+Y Sbjct: 243 EIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ERTEDIPLLA H L ++++ V FS D + L + +WPGN+R+ Sbjct: 303 RLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRE 362 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENT----ALPTFVEARNQFELNYLRKLLQITK 411 L NVIE+ V L I+ V E T + E Q E + L+ Sbjct: 363 LENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEAND 422 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHEL 437 + A++ +R Y L+++++ Sbjct: 423 ADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 173/466 (37%), Positives = 264/466 (56%), Gaps = 28/466 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL++DD+P + + + L SE + V T +G L + +E DLV++DL+M + GM+ Sbjct: 6 KLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGME 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS-- 124 + I+++QP +PVI +T + S+ AV + G ++ KP + + I ALEQ Sbjct: 66 VLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVV 125 Query: 125 --------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 D + V +S M+++ + VA +D +VLI G+SGTGKE+ A+A Sbjct: 126 DLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R PF+A++C +L E LLESELFGH +G+FTGA+ + GLF+ AEGGTLFLDE Sbjct: 186 IHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 + ++ Q KLLRVLQER+V P+G + IN+R+++AT+R L + +A G FREDL++R Sbjct: 246 VSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LN++ + +P L ERT DIPLL H +R AE ++ + AM+ L + S+PGNVR+L Sbjct: 306 LNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVREL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTF------------------VEARNQF 398 N+IE+ V L +I+ +E T L + +A Sbjct: 366 ENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDI 425 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 E ++ LQ +GN+T AA G R F ++ + + A D+ E Sbjct: 426 EKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGISARDYVE 471 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 168/454 (37%), Positives = 246/454 (54%), Gaps = 16/454 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ +L+ L L EGY + A SG E L L R+ DL++ D+ M MD Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + EI+K +PVII++ HG+I AV AT+ G F F+ KP+ + + +I +AL+ Sbjct: 61 GLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDF 120 Query: 124 SAPATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + RS + L EQ R A ++ +VLI G++GTGKE+ A+ Sbjct: 121 HRLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARM 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R+ +P + +NC A+PE L+ESELFGH +GAFTGA R G F A GGTLFLDE Sbjct: 181 IHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM Q K+LR+LQE+ +G +R I ++VR+++AT++D+ + + G FR+DLYYR Sbjct: 241 IGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + +P L +R +DIPLL L A + L SWPGN+R+L Sbjct: 301 LNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP---------TFVEARNQFELNYLRKLL 407 N IE+ V +T I + P T EAR+ FE YL + L Sbjct: 361 RNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 NV+ A G R+ ++ + + + Sbjct: 421 DEFAWNVSLTAAQVGLERSHLHRKMKALGIRERE 454 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 172/449 (38%), Positives = 256/449 (57%), Gaps = 21/449 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L++DDDP ++ ++ G+ V SG + L L LVI+DLRMD++ G+ Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + E ++V P PVI++TA+ ++ A+ A + G + ++TKP D L I AL+ + Sbjct: 62 DILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQS 121 Query: 126 PATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + R E I+ S M + VA +D ++LI G+SGTGKE+ A+ Sbjct: 122 LVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVAR 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R +PF+AINC ALPE LLESELFGH +G+FTGAV ++ GLF+ AEGGT+FLD Sbjct: 182 ALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+ M PLQ KLLRVLQER++R +G + + INVR+++AT+ L + G FREDLYY Sbjct: 242 EVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V+ +++PAL ER +DIPLL +H L++ A + + A++ L WPGNVR+ Sbjct: 302 RLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRE 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEARNQFELNYLR 404 L N +E+ AL +I + + TA P T E + E Y+ Sbjct: 362 LENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYIE 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + ++ + AA+M G + Y+ L Sbjct: 422 ETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 175/491 (35%), Positives = 257/491 (52%), Gaps = 53/491 (10%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +L++DD+ G+ L L EG+ V+ A SG +GL +L RE DLV D+ M MD Sbjct: 1 MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + ++ +P +PVI+++ HG+I AV A ++G F+ KP+ + + A ALE Sbjct: 61 GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEY 120 Query: 124 SAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + + RSP+M L Q VA +D VLI G++GTGKE+ A Sbjct: 121 GDLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R +P +A+NC A+PE+L+ESELFGH +GAFTGA S + G F+ A GTLFL Sbjct: 181 RAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM Q K+LR+LQE++ +G +R + ++VR+I+AT+++L +A G FREDLY Sbjct: 241 DEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V L +P L ER D+PLL + ++ A + F+ DA + L WPGNVR Sbjct: 301 YRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTA--------------------------- 387 +L N +E+ + L + ++ +++ + A Sbjct: 361 ELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQG 420 Query: 388 ---LP--------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 LP AR FE YL L GNVT A G R+ Y+ Sbjct: 421 GDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYR 480 Query: 431 LLSRHELDAND 441 L + + D Sbjct: 481 KLKGYNIQTTD 491 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 184/453 (40%), Positives = 289/453 (63%), Gaps = 12/453 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L++DDD +L++L +RL + GYSV A+ G E VL + K++LV+ DLR+ Sbjct: 1 MSKE--KILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLS 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E +G++L +I K P +P+II+TAHGSI AV A ++G +S++ KP D L I +A Sbjct: 59 EENGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNA 118 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + + I+ ++ ML +LE V+++D +V+I G+SGTGK Sbjct: 119 LEKQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + PFIA NCGA+PE LLE+ELFGH RGA+T A ++EGLF A+ G Sbjct: 179 ELIARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 ++FLDEI + Q+KLLRVLQER+++P+GS ++ INVRII+A++ DL KA++ G FR Sbjct: 239 SIFLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DL+YR++V+ + +P L +R +DIPLLA + + + + K FS A++R++ WP Sbjct: 299 DDLFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GN+R+L N IE + + I + ++ +A+ +FE Y+ LL+ Sbjct: 359 GNIRELRNKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAKERFEREYIENLLKAN 418 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 GN+T+A++MA R R + YKL+ ++ ++ D+K Sbjct: 419 NGNITNASKMASRYRADIYKLIKKYNINPEDYK 451 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 163/455 (35%), Positives = 259/455 (56%), Gaps = 24/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L + L +GY V G + + L + DL+ISD++M +DG Sbjct: 29 RILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFG 88 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ +I++TA + AV A ++G + ++TKP + + +++ALE+ Sbjct: 89 LLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDL 148 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + I+ +S +M + + V+ S V+VLI G+SGTGKE+ A+A Sbjct: 149 RRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARA 208 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R+ +PF+AI CGA+PE LLESELFGH +GAFTGAV ++GLF+ A+GGTLFLDE Sbjct: 209 IHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDE 268 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++P +QVKLLRV+QE + R +G RD+ ++VR+++AT++DL +A+ +FREDLYYR Sbjct: 269 IAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYR 328 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + +P L +R EDIPLL +H L++ M+R + WPGN+R+L Sbjct: 329 LNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDYHWPGNIREL 385 Query: 357 VNVIEQCVALTSSPVISDALVEQAL-------EGENTALP----TFVEARNQFELNYLRK 405 N +E+CV L I++ + + + + T LP + E + L K Sbjct: 386 ENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLK 445 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 L T G AA + L++ ++A Sbjct: 446 ALDRTGGVRKRAAELLHITFRSIRYRLAKFGIEAE 480 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 176/462 (38%), Positives = 288/462 (62%), Gaps = 24/462 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS H++++DD+P +L+ + GY T E E L + R + DL+I+D++M Sbjct: 1 MSEDR-HIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + DG ++ + + P VI++T + S+ AV A ++G + +L+KP + L I+ A Sbjct: 60 QCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ A + + A I+ + + E ++ SD S+LI G+SGTGK Sbjct: 120 LQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R++ PFI ++C +LPE LLESELFG+ RGAFTGA + ++GL + A GG Sbjct: 180 EVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+G++ +Q KLLR L+ER +R +G NR I+I++R+++AT+RDL KA+ EFR Sbjct: 240 TLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYR+NV++LK+P L ER +DIPLL NH ++ ++ V F+ +AM+ + + +WP Sbjct: 300 EDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEG---------ENTALPTFVEARN----Q 397 GN+R+L NV+E+ ++L+ S ++ + + + + G EN +F EA++ + Sbjct: 360 GNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDICLKR 419 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 FE+ YL++LL GN+T AA+ AG +R ++L+++++L Sbjct: 420 FEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQR 461 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 186/451 (41%), Positives = 270/451 (59%), Gaps = 18/451 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+PG+ + LG L EG+ V TA GAEG+ + + + LV D++M +DG++ Sbjct: 4 RILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDGLE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +++ P V++++ H +I AV ATQ G + L KP+D D + + +A Sbjct: 64 VLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNRQL 123 Query: 127 ATDE-------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + R IV RS + LLE+ V + VLI G++GTGKE+ A+AIH Sbjct: 124 TEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAIHR 183 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R KPFI +NC A+P +L+ESELFGH +G+FTGA+++R G F+ A GGTLFLDEIGD Sbjct: 184 GSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEIGD 243 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q K+LRVLQ+ V +G ++ + ++VR+++AT++DL + +A G FREDLYYRLNV Sbjct: 244 MSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRLNV 303 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V + +PAL ER EDIPLL H L+Q AER R+ S +A++RL WPGNVR+L N Sbjct: 304 VPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRELRNT 363 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALP----------TFVEARNQFELNYLRKLLQI 409 +E+ V L S+ IS A +++ L G TA P TF E + E +L L+ Sbjct: 364 MERLVILASAASISVADIDR-LAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLLAKLRA 422 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 NV+ AR R+ YK + R+ L Sbjct: 423 FDWNVSETARALDMPRSNLYKKIERYALTRE 453 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 177/442 (40%), Positives = 257/442 (58%), Gaps = 13/442 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ + + L + L EGY V TAE G G+ + + +DL+I+DL+M M G Sbjct: 4 SILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGEL 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + V P +P+IILT HG++ +AV A +G + FLTKP+D + L + AL+ Sbjct: 64 VLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNREL 123 Query: 127 ATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 R E IV SP M ++ + + A S SVLI G+SG GKE+ A A Sbjct: 124 IVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IHN SPR +KP I ++C + E +LESELFGH RGAFTGAV+ +G F+ A G++FLDE Sbjct: 184 IHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ +Q+KLLRVLQER +G I ++VR+ISAT+R+L + + R FREDLYYR Sbjct: 244 IGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + +PAL ER ED+PLL L++ AE + + + A L WPGN+RQL Sbjct: 304 LNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQL 363 Query: 357 VNVIEQCVALTSSPVISDALVEQALE--GENTALP-TFVEARNQFELNYLRKLLQITKGN 413 N IE V ++S PVI + + + GE +++ + E + + L+ KGN Sbjct: 364 RNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQKGN 423 Query: 414 VTHAARMAGRNRTEFYKLLSRH 435 + A + G R Y L ++ Sbjct: 424 KSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 214/453 (47%), Positives = 296/453 (65%), Gaps = 10/453 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L +DDDP L+LLGL L SEGY V+ + +G++ L + DLVI+DLRM Sbjct: 1 MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDGM + +Q + P +PVI+LTAHGSIP+AVAA + F +L+KP + L + A Sbjct: 61 GMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L Q + R A I+ RSP M L+++ VA S SV ++G+SG+GKE Sbjct: 121 LAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 A+AIH+ASPR PF+A+NCGA+P L ESELFGH +GAFTGA + GL ++A GGT Sbjct: 181 RVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI D+P LQVKLLRVLQE +RP+G+ +I +++R+ISATH+D+ A G FRE Sbjct: 241 LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL+V+ L++P+L+ER EDIPLLA H L + ++R + FS +A+ +LM SWPG Sbjct: 301 DLYYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVI-SDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 NVR+L N + A+T + +DA+ + +G +A P +A+ FE YL LL+ T Sbjct: 361 NVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFPPLQDAKAAFERGYLENLLRAT 420 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 GN++ AAR+AGR+RT+ YKL+ +H L FK Sbjct: 421 DGNISRAARIAGRHRTDLYKLMRKHSLAPQLFK 453 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 176/471 (37%), Positives = 260/471 (55%), Gaps = 33/471 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+P + + L +EGY V A +G +G++ + + DLVI+DLRM DG+Q Sbjct: 4 SVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDGLQ 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++ VI++TAHGS+ AV A + G ++TKP D L +D A + A Sbjct: 64 VVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKVQAL 123 Query: 127 ATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + +V ++ M ++LE+ +LVA +D +VLI G+SGTGKE+ A A Sbjct: 124 RQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANA 183 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR + I ++C ALPE LLE+ELFGH RGAFTGA+ R G F+ A GTLFLDE Sbjct: 184 IHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLDE 243 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ +QVKLLRVLQE++ +G I +VR++ AT ++L + + G FREDL+YR Sbjct: 244 IGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFYR 303 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + +P L ER EDI +LA HLL+++ R + ++ FS A L+ S+PGNVR+L Sbjct: 304 LNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNVREL 363 Query: 357 VNVIEQCVALT-SSPVISDALVEQALEGENTALP----------------------TFVE 393 N IE+ VAL I + P T E Sbjct: 364 ENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAE 423 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 R + E Y+ +L+ + T A++ G +R ++ R+ L D E Sbjct: 424 VRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGLATPDTDE 474 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 213/458 (46%), Positives = 295/458 (64%), Gaps = 15/458 (3%) Query: 1 MSHK-----PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVIS 55 MS K P H+ ++DDD L+LLGL L SEG+ V + + ++ + RE DLVI+ Sbjct: 1 MSRKSLGSDPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVIT 60 Query: 56 DLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQ 115 DLRM EMDGM++ +Q++ P +PVI+LTAHGSIP+AVAA + F +L KP + L Sbjct: 61 DLRMPEMDGMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELES 120 Query: 116 AIDDALEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 + AL Q + + A I+ RSP+M +L+++ VA S SV + G+S Sbjct: 121 LVAAALRQRQASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGES 180 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 G+GKE A+AIH ASPR PF+A+NCGA+ L ESELFGH +GAFTGA + GL +A Sbjct: 181 GSGKERVARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRA 240 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 A+GGTLFLDEI D+P LQVKLLRVLQE +RP+GS + +++R+ISATH+D+ A Sbjct: 241 ADGGTLFLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTAS 300 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 G FREDLYYRL+V+ L++P+LAER EDI LLA H L + R + ++ FS +A+ +L+ Sbjct: 301 GAFREDLYYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLIC 360 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQA-LEGENTALPTFVEARNQFELNYLRK 405 WPGNVR+L N + ALT ++ + G +A P +A+ FE YL Sbjct: 361 RPWPGNVRELENAVTLAAALTEKGWVAAETIPDPSRAGGRSAFPPLQDAKAAFERGYLEN 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 LL+ T GN++ AAR+AGR+RT+ YKL+ +HEL +FK Sbjct: 421 LLRATDGNISRAARIAGRHRTDLYKLMRKHELTPQEFK 458 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 182/452 (40%), Positives = 267/452 (59%), Gaps = 17/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ G+ +LL L G+ S AE +L E D+V++D+ M M Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I + +P +PVI++TA GS+ A +A + G + F+TKP + DAL ++ AL Sbjct: 61 GLDLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRH 120 Query: 124 SA----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A D R E I++ SP+M + + +A SD S+LI G+SGTGKE+ Sbjct: 121 RALREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H S R+ F+A+NC A+P+ LLESELFGHARGAFT A R GLF A GGTLF Sbjct: 181 ARAVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++P LQ KLLR LQER VRP+G++ ++ ++VR+I+AT+RDL A+ FREDL Sbjct: 241 LDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NVV + +P L R D+ LLA H L A ++ S A ++LM +WPGNV Sbjct: 301 YYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG-------ENTALPTFVEARNQFELNYLRKL 406 R+L N IE+ VAL I+ + + + ++ PT + + E Y+ ++ Sbjct: 361 RELQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRV 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L++ GN + AA++ G +R Y+ L R+ + Sbjct: 421 LEVVGGNKSQAAQILGFDRATLYRKLERYGMR 452 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 162/447 (36%), Positives = 272/447 (60%), Gaps = 15/447 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+DD + + L L+ +GY+V + +SG + L + + + DLV+SDL++ MDGM+ Sbjct: 5 TILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDGME 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + I++ + +I+TA+G++ AV+A +QG ++ KP D + L ++ LE+ Sbjct: 65 VLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKRGL 124 Query: 127 ATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 D E IV S M+ + + V +S +VLI G++GTGKE+ A+A Sbjct: 125 FLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVARA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KP++ +NC AL E L+ SELFGH +GAFTGAV+++ GLF+AA+GGTLFLDE Sbjct: 185 IHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTLFLDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+ LQ LR L++ +++P+GS + ++VRII+AT+++L + +G FR+DLYYR Sbjct: 245 IGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV++ +P L +R EDI LLA H L + A ++ +R + A++ L SWPGNVR+L Sbjct: 305 LNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDALVEQALEG-----ENTALPTFVEARNQFELNYLRKLLQITK 411 N+IE+ + I+ + Q + + + + ++ ++L++T Sbjct: 365 ENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVSRRHIVRILEMTN 424 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 N T A+++ G +R+ +++++R +L+ Sbjct: 425 HNKTQASKLLGIDRSTLWRIMNRLKLN 451 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 176/460 (38%), Positives = 256/460 (55%), Gaps = 26/460 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+ + + L + L EG+ V A G L L +E DL+ISD+RM +G+ Sbjct: 2 GRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + +++QP +PV+++TA S DAV A + G F +LTKP D + + AL Sbjct: 62 ELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSRR 121 Query: 126 PATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + I+ SP ML++ E R VA + +VLI+G+SGTGKE+ A Sbjct: 122 QLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH SP F+ I C A+PE L ESELFGHA+GAFTGA +NR GLF+ A GT FL Sbjct: 182 RAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFL 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++ Q KLLRVLQER+++ +G + I IN R+ISAT+RDL + +A G FREDL+ Sbjct: 242 DEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLF 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL VV +++P L ER D+PLL H L + + +R S+ A++ LM +PGNVR Sbjct: 302 YRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPT---------------FVEARNQFE 399 +L N+IE+ VA+ +S +I + A FE Sbjct: 362 ELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFE 421 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + K LQ + T AA + + + ++E+D+ Sbjct: 422 RQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKKYEIDS 461 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 171/459 (37%), Positives = 255/459 (55%), Gaps = 17/459 (3%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDD+ G +L L L EGY +V E L L+R + DL+++DL+M Sbjct: 5 RKSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQ 64 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G+ L + P VI++TAHGS+ AV A + G F +L KP+++D L + A E Sbjct: 65 SGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFE 124 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + R + +++ P M + +A + +VLI G+SGTGKE+ Sbjct: 125 RIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKEL 184 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH S R PF+AINC A+PE L+ESELFGH +G+FTGA + G+F+AA GGT+ Sbjct: 185 VARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTV 244 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+M +Q KLLR +QE++VR +G +I ++VRIISAT+++L + + RG FRED Sbjct: 245 FLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFRED 304 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV+ + +P L ER D+ LA +++ + V S A+K LM SWPGN Sbjct: 305 LYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGEN-------TALPTFVEARNQFELNYLRK 405 VRQL +VIE+ V + S VI + + + LP E N + K Sbjct: 365 VRQLESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIK 424 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 ++ + AA + G + L + ++ D ++ Sbjct: 425 AMERADWVIGKAAPLLGMSYKTLQYRLEKFAIERPDRRQ 463 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 158/461 (34%), Positives = 251/461 (54%), Gaps = 31/461 (6%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + + L ++GY + A S E L ++ DL++ DLR+ ++G++L Sbjct: 7 ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVEL 66 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +I++ P ++++T +GS+ AV + G + +L KP D L ++ AL + Sbjct: 67 IEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQGLR 126 Query: 128 TD------------ERWREAIVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIFA 174 + E I+ SP M + + VA+S + VLI G+SGTGKE+ A Sbjct: 127 QEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVA 186 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSN-REGLFQAAEGGTLF 233 +A+H S R S F+ INC AL E LLE+ELFG+ +GAFTGA + + GLF+ A+ GT+F Sbjct: 187 RAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+M LQ KLLR+LQER+ + +G +DI I+VRII++T+R+L + +A G FR+DL Sbjct: 247 LDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL V+ + +P L ER EDI LL + + + + D + L+ WPGN+ Sbjct: 307 YYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPGNI 366 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGEN-----------------TALPTFVEARN 396 R+L NV+E+ V + + +S V G+ ++ + Sbjct: 367 RELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDGLDARSLA 426 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E ++ +L+ T T AAR+ G NRT Y + + + Sbjct: 427 FMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 162/452 (35%), Positives = 253/452 (55%), Gaps = 18/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +++ DD+P + ++ L L +GY V TA +G E + L + D+++ D +M + Sbjct: 1 MKAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLT 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +I+++ P V+ +TA GS+ AV A ++G + F+ KP D D L + A+E Sbjct: 61 GVEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEH 120 Query: 124 SAPATDERWRE--------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + + I+ + +++ Q VA++D +VLI+G+SGTGKE+ A Sbjct: 121 CRMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAW 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH+ S R S+PF+AINCGA+P L+ESELFGH +GAFT A + G F+ A GGTLFLD Sbjct: 181 AIHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++P QVKLLRVL+ERK+ +G + I +NVRI++AT+R+L + + G+FR DL Y Sbjct: 241 EIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV ++++P L ER EDIPLLA LR+ + + + +AM +L WPGNVR Sbjct: 301 RLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRD 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG----------ENTALPTFVEARNQFELNYLRK 405 L N ++ + L I + ++ E + + + E + Sbjct: 361 LENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILS 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 LQ N T A +R + + R+ L Sbjct: 421 ALQKHNYNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 171/460 (37%), Positives = 258/460 (56%), Gaps = 21/460 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + L + L+ EGY V TA +G + +L + D+VI+DL+M+ DG Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGY 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + ++++ PVII+TA GSI AV A + G ++ KP + + + + LE + Sbjct: 62 DVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHGS 121 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + IV S M ++ + A + +++I G+SGTGK + A+ Sbjct: 122 LRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAE 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR KPF+AINC A+PE LLESELFG+ +GAFTGA SN+ GL A+GGTLFLD Sbjct: 182 AVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q K+L+VL+ +V PLG + ++++RIISAT++DL + FREDLYY Sbjct: 242 EIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ +++PAL ER EDIPLLA +++ V+ F AMK +M WPGNVR+ Sbjct: 302 RLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVRE 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQALE-----------GENTALPTFVEARNQFELNYLR 404 L NV+E+ V I+ A + + E + L +E + + Sbjct: 362 LKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDIII 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L G+ A+ G + T Y+ +S+ +D K+ Sbjct: 422 NALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGIDEEALKK 461 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 160/443 (36%), Positives = 253/443 (57%), Gaps = 14/443 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD + +L+ L SEG + V GAE ++ R+ DL+I+DL M ++DGM+L Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMEL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + P V+++T +GSI AV A + G + +L KP + D L + AL + Sbjct: 66 LNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRLQ 125 Query: 128 TDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + R + ++ S M L +A D +VLI G++GTGKE+ A+ IH Sbjct: 126 DENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIH 185 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R + F+ INCGALPE LLESELFGHARGAFTGA +++GL ++A+ GTLFLDEI Sbjct: 186 RLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEIN 245 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 QVKLLRVLQE +G + +++R+I+A++ L K + G FR DL+YRLN Sbjct: 246 TTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLN 305 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV++ +P L ER DI LLA++ L + A ++ + + S +A++ L WPGNVR+L N Sbjct: 306 VVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELEN 365 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLLQITKGNV 414 +IE+ V + + + + +T L + + + E ++ ++L+ T G+ Sbjct: 366 IIERAVIMADGNELQPQYLPR-FSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGHR 424 Query: 415 THAARMAGRNRTEFYKLLSRHEL 437 A+++ G + ++ + ++ L Sbjct: 425 GKASKLLGISLASLWRKVKQYGL 447 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 181/483 (37%), Positives = 263/483 (54%), Gaps = 47/483 (9%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + PA +L+VDD+ L L L +G+ TA +GAE L +L DLV++DL M Sbjct: 33 TPGPARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQG 92 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ L ++ P V+++T + ++ AV A G + +L KP D + + AL Sbjct: 93 MDGLDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKAL 152 Query: 122 EQSAPATD-ERWREAI---------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E+ + R RE + + +P M L VA SDV+VLI G++GTGKE Sbjct: 153 EKRRLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKE 212 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ +H S R+ F+AINCGA E+LLESELFGH +GAF+GAV R+GLF+AAEGGT Sbjct: 213 LAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGT 272 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G+M P+QVKLLR +QER +R +G DI ++VR+++AT++DL A G FR Sbjct: 273 LFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRH 332 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNVV L++P LAER ED+PLLA + +AA + + + L +PG Sbjct: 333 DLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPG 392 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALE----------------------------- 382 NVR+L N+IE+ L + VI+ A + L Sbjct: 393 NVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADE 452 Query: 383 --------GENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 GE ++ E ++ +L++ GN THAA++ +R ++ L R Sbjct: 453 AARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKR 512 Query: 435 HEL 437 + L Sbjct: 513 YGL 515 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 258/476 (54%), Gaps = 42/476 (8%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDDD GL+ L + + Y V++ SG L + RE DL++ D +M Sbjct: 2 RKMDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGK 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G++ EI+++Q P+I++TA+G++ A+ A + G + +L KP D++ L + DALE Sbjct: 62 NGLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALE 121 Query: 123 QSAPATD--------------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 + + + I+ M + + VA DV+VLI G+SGT Sbjct: 122 VNRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGT 181 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+++ S R +KPF+ +NC A+PE L ESELFG+ RGAFTGA G F+ Sbjct: 182 GKELVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCH 241 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGTLF DEI +MP Q KLLR LQ ++ +G+ + + ++VR++ AT+++L +A+ +G Sbjct: 242 GGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGR 301 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLY+RL ++S+ +P L ER EDIP L ++ L + E +K +R A+ +L + + Sbjct: 302 FREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHA 361 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV---------------- 392 WPGNVR+L N + + V L+S VI + + G + P + Sbjct: 362 WPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPWARVERKLEELIP 421 Query: 393 -------EARNQ-----FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 EA ++ E L K+L+ N AAR+ G +R + + + Sbjct: 422 DLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKFD 477 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 180/455 (39%), Positives = 262/455 (57%), Gaps = 19/455 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++L+V+D ++L L EG++V A SG E ++ + DLV+ D +M MD Sbjct: 2 KSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GMQ+ E++++ P V+I+TA+G+I AV A + G ++TKP++ D L +D E+ Sbjct: 62 GMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAER 121 Query: 124 SAPATDERWR-----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + +AI+ S M L A VA S +VL+ G+SGTGKE+ Sbjct: 122 RTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKEL 181 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH SPR+++P I +NCGALPE L+ESELFGH +GAFTGA S R G F+ A+GGTL Sbjct: 182 LARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTL 241 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG++ P+QVKLLR LQER+ + +G N +I +VRIISAT+RDL + +FRED Sbjct: 242 FLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRED 301 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV + IP L ER EDIP L +H L + A + + S++A LM +PGN Sbjct: 302 LYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGN 361 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE---QALEGENTALPTFVEAR-----NQFELNYLR 404 VR+L N+IE+ V + + +I + L + +P E R E ++ Sbjct: 362 VRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQMIQ 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++ + T AA M G + L ++ L + Sbjct: 422 DAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLKS 456 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 173/464 (37%), Positives = 267/464 (57%), Gaps = 26/464 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+VDD+ G K+L LT G+ V TA SG E L + L++ D+++ Sbjct: 1 MNRT--KILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLP 58 Query: 61 E-MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +DG++L +++ ++I+TA+G I AV A ++G F+++TKP D + I+ Sbjct: 59 GSIDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIER 117 Query: 120 ALEQSAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 +EQ+ + + R+ I+ S + ++++ VA S +VLI G+SGTG Sbjct: 118 MIEQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTG 177 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH R K F+ INC L E LLESELFGH RGAFTGA+ +++GLF+ A+G Sbjct: 178 KELVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADG 237 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DEIGD+P P+Q K+LRVLQE + PLG +++VRII+AT++ L K + EF Sbjct: 238 GTLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEF 297 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNV+++K+P L ER EDIPLL H + + ++ ++ S + L W Sbjct: 298 REDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHW 357 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE------------ARNQ 397 PGNVR+L N IE+ V LT+ P+I ++ + E+ + A + Sbjct: 358 PGNVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKALDV 417 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 F Y+ ++ GNVT+AAR R ++L ++ + + Sbjct: 418 FNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKKYAIKSRQ 461 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 175/460 (38%), Positives = 269/460 (58%), Gaps = 22/460 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRM 59 MS + + DD+ G+LK + L S+G V T SG L L + DL++ D++M Sbjct: 6 MSET--RIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKM 63 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +MDG+Q+ E++K++PG+PV+I+TA G+I AV A + G + ++TKP K+ + +++ Sbjct: 64 PDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLEN 123 Query: 120 ALEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 LE+ + + +AIV S + E VA S+ ++LI G+SGTG Sbjct: 124 VLERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTG 183 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A AIH S R + ++INC AL + LLES+LFGH RGAFTGA +N++GL + A+ Sbjct: 184 KELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADS 243 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DEIGDM LQ KLLRV+QE P+G+ R +++R ++AT+++L K +A G F Sbjct: 244 GTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRF 303 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNV+S+ +P L ER EDI LA H LR+ +R V F+ +A+ ++ SW Sbjct: 304 REDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSW 363 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVE--------QALEGENTALPTFV-EARNQFEL 400 PGN+R+L NV+E+ V L S V++ + A G +AL + + E Sbjct: 364 PGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVER 423 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++R+ L T + + A + G +R + ++ L Sbjct: 424 EHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLKPE 463 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 182/464 (39%), Positives = 258/464 (55%), Gaps = 33/464 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS ++L VDD+P +L+LL + L GY +TA G E L V+N ++VD V++DL M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+QL E++K +PVII+TA G I A+ A + G ++ +P D L AI A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LEQSAPATDERWRE-------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 L S + R+ ++ SP M L E R VA +VL+ G++GTGKE+ Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH ASPRN+ F+A+NC A+P ++LESELFGH +GAFTGAV R G F+ A+GGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ +MP LQ KLLR LQE + LG NR I +++R+++AT+R+ A+ G+ REDL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV + +PAL R DI LLA H L S A++ LM WPGNV Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNV 353 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQAL---------------EGENTALPT----FVEA 394 R+L NV+E+ ++ + I + + + P A Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNA 413 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E + K L T GN + AA++ + + LS++ + Sbjct: 414 VEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGIS 457 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 611 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 163/444 (36%), Positives = 251/444 (56%), Gaps = 15/444 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ L L+ EGY + A G E L +L V++D+RM MDG+ Sbjct: 14 RILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDGIN 73 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++ +++TA S+ AV A + G ++L KP+D +A+ ++ ALE+ Sbjct: 74 LLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRL 133 Query: 127 ATD---------ERWR-EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 D ER+R IV +P + + E + A + +VLI G+SGTGKE+FAQA Sbjct: 134 QRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQA 193 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR K FI +NC AL E LLESELFGH +GAFTGA+ +EG F+ A+GGTLFLDE Sbjct: 194 LHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDE 253 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGD+ LQ+KLLRVLQ+R+ +G + + ++VR+++AT+RDL + G FREDLYYR Sbjct: 254 IGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYR 313 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV++ +P L +R DIP L +H + + ++ + +R + + +++ WPGNVR+L Sbjct: 314 LNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVREL 373 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGEN-----TALPTFVEARNQFELNYLRKLLQITK 411 NV+E+ V L ++ + L G + E + + L++ Sbjct: 374 ENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIEREAILRTLEMVG 433 Query: 412 GNVTHAARMAGRNRTEFYKLLSRH 435 G+ + AA + G + + L + Sbjct: 434 GSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 611 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 172/437 (39%), Positives = 263/437 (60%), Gaps = 6/437 (1%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL+DD+ +LK++ L+ G+ V+TA+S E L ++ +EK DL+ISD +++ G++ Sbjct: 3 KILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +K P +I+TA+GSI AV A ++G ++ KP+D D L + ID +++ Sbjct: 63 ILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQEN 122 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 E E I+ +S M L ++ +V++S+ S+LI G+SGTGKE+ A+AIH S R ++ Sbjct: 123 FDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQ 182 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 PFI INC A+P +L E+ELFGH +G+FTGA + G + A GTLFLDEIG+MP +Q Sbjct: 183 PFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQA 242 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRVLQER+ +G I + R+ISAT+R+L + + EFREDL+YR+NV+ LKIP Sbjct: 243 KLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPP 302 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L ER EDIPLL + + ++ + V DA++ LM WPGNVRQL N+IE+ V L Sbjct: 303 LRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVL 362 Query: 367 TSSPVISDALVEQALEGENTALPTFVEARN------QFELNYLRKLLQITKGNVTHAARM 420 +I+ + ++ + + + + N E N + K+LQ N T AA+ Sbjct: 363 CQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQTRAAQK 422 Query: 421 AGRNRTEFYKLLSRHEL 437 G +R + + L Sbjct: 423 LGISRKQLRTKMKNFGL 439 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 165/473 (34%), Positives = 261/473 (55%), Gaps = 35/473 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L + L+ GY+V TA SG+E + L+ K D+ + D+R+ + DG+ Sbjct: 5 RILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLD 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L + + + VI++TA+ + AV A + G ++ KP + +AL ID A E+ Sbjct: 65 LLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFEKRQL 124 Query: 127 ATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDV-SVLINGQSGTGKEIFAQ 175 + + +V S M+ L + ++ A +D +VLI G+SGTGKE+ A+ Sbjct: 125 REKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIHN S R PF +NC A+PE LLESELFGH +GA+T A R+G+F+ AEGGT+FLD Sbjct: 185 AIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGTVFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q K+L+V++ ++ R LG+ DI +VRII+ATH+DLP + FR DL+Y Sbjct: 245 EIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRGDLFY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+++ +P L ERT+DIP L + + + E + V S + M L WPGNVR+ Sbjct: 305 RLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGE------------------------NTALPTF 391 L N IE+ + L S +++ + ++ + + +PT Sbjct: 365 LRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTG 424 Query: 392 VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 + + E +R L+I+ GN T AA+ +R + + + + K+ Sbjct: 425 GISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMSESSQKD 477 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 170/467 (36%), Positives = 265/467 (56%), Gaps = 26/467 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 P +L+VDD+ +L LL L+ + + + + + +L + DLVI+DLRM Sbjct: 1 MPGKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGR 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ + +++ P VII+TA+G+I A+ AT++G F ++TKP K+ + +D AL+ Sbjct: 61 DGLGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALK 120 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + +++ S M L Q VA++ +VLI G+SGTGKE+ Sbjct: 121 WQQLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ +H S R + FI +NC LPE ++ESELFGH RG+FTGA+ +++GL + A GTL Sbjct: 181 VARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGD+ +QVKLLR+LQE + + +GSN +++R I+AT+++L + + RGEFRED Sbjct: 241 FLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNV+++ +P L ER +DIPLL + L + H ++ S + LM WPGN Sbjct: 301 LFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE-QALEGENTALPTFVEA--------------RNQ 397 VR+L N IE+ V + S + V E ++ P F E + Sbjct: 361 VRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIEE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 F+ Y+ K L GNV+ AAR +G R ++L+ +D+ FK+ Sbjct: 421 FQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVDSKTFKK 467 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 175/474 (36%), Positives = 262/474 (55%), Gaps = 34/474 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + A +L+VDDD L + L +EGY+V TA SG G+ + DLV+ D+RM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++ +A +++ +P +PVII+TA G+ A+ AT+ G + ++ KP D + + I+ A Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LE-----QSAPATDERWR-----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + +S A E +AI+ RS M L + A +D +VLI G+SGTGK Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A++ S R KPF+ INC A+PE LLESELFG+ +GAFTGA + G + A G Sbjct: 181 ELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGDMP +Q K+LR+LQE+ V LG + I ++VRII+AT+RDL A+ G+FR Sbjct: 241 TVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL VV++ +P L ER DIPLL + L + + S +AM L T WP Sbjct: 301 EDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVE----QALEGENTALPTFVEARNQFELN----- 401 GNVR+L N +++ + + V+ + L G A ++ ++ Sbjct: 361 GNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELASG 420 Query: 402 ---------------YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +R+ L+ T GN + AAR+ G +R + ++ L Sbjct: 421 RESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGLRIE 474 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 168/452 (37%), Positives = 256/452 (56%), Gaps = 20/452 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ G+ L L G+ V A++G GL ++ DL+ D+ + +DG+ Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + + VI++TA S+ AV + G +LTKP D L AL + A Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 127 ATDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + +V +SP ML+L + VA +D++VL+ G+SGTGKE+ A+A+H Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 R + F+ +NCGAL + LLESELFGH RGAFTGA + GLF AA+GGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLR LQ+ +++P+G ++VR+++AT+RDL +A+A+G FREDL+YRLNV+ Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 ++++PAL ER ED+P+LA H AA R + S A++ L WPGNVRQL N I Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 361 EQCVALTSSPVISDAL--------------VEQALEGENTALPTFVEARNQFELNYLRKL 406 E+ V L + + G + + ++ E ++ ++ Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRV 434 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ G T A+ + G NRT +K L ++ L+ Sbjct: 435 LEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 174/451 (38%), Positives = 260/451 (57%), Gaps = 16/451 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + K A +L+++DD L +LL + LT GY V +A G EGL +E ++V+ D+RM Sbjct: 6 TRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPG 65 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+++ +++ VI+ T HG+I AV + G + +LTKPV D L ID A Sbjct: 66 MDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKAN 125 Query: 122 EQSAPATDE---------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 E++ + + IV +S ++ ++LE R +D VLI G+SG GKE+ Sbjct: 126 EKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKEL 185 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 FA+A+H+AS R +KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ GTL Sbjct: 186 FARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTL 245 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DEI +MP +QVKLLR+L+ R +G N DI ++VR + A+++ L + RGEFRED Sbjct: 246 FMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRED 305 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L++R+N++ + IP L ER EDI L+ + L ++A S +AM L SWPGN Sbjct: 306 LFHRINLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGEN-----TALPT-FVEARNQFELNYLRKL 406 VR+L N I + L + +IS L+ + T LP E +Y++K+ Sbjct: 365 VRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQKV 424 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L+ +GN + AA++ +R Y L R+ L Sbjct: 425 LEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 171/464 (36%), Positives = 250/464 (53%), Gaps = 33/464 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + +VDDD + +L L G + T E+GAE L L + D+++SD+RM MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +I++ P +PVII+TAH + AV+A QQG F +L KP D D ++ A+ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 128 TDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 R + I+ +P M + +++S +SVLING+SGTGKE+ A A+H S Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR PFIA+N A+P+ L+ESELFGH +GAFTGA + R+G F+ A+GGTLFLDEIGDMP Sbjct: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 +Q +LLRVL + + +G + ++VRII+ATH++L + + G+FREDL++RLNV+ Sbjct: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 + +P L ER EDIP LA H L+ AA + + L +WPGNVRQL N Sbjct: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 Query: 362 QCVALTSSPVISDALVEQALEGENTALPT---------------------------FVEA 394 + + + + L A T EA Sbjct: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + E L L+ T+G+ AAR+ G R + L ++ Sbjct: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 164/467 (35%), Positives = 267/467 (57%), Gaps = 26/467 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKL----LGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISD 56 M++K H L+VDD+ L + L + +++ A +G E L + +++ DLV+ D Sbjct: 1 MTNK-LHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMD 59 Query: 57 LRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 ++M EM+G++ I++ P V+++TAH ++ DAV A ++G + ++ KPV L + Sbjct: 60 VKMPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEI 119 Query: 117 IDDALEQS---------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 + +LE P D+ IV S M + + + D +VL+ G++G Sbjct: 120 VRKSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENG 179 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH SPR S F+AINCGA+PE L+ESELFGH +GAFTGAV + G FQ A Sbjct: 180 TGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLA 239 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GTLFLDEIG++ +QVKLLRVLQERK P+GSNR++ RII+AT+R+L K M G Sbjct: 240 NNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEG 299 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 EFREDL+YRLNV+ + +P L ER +DI LA + +++ +++H + A + +A+ L + Sbjct: 300 EFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSY 359 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGEN------------TALPTFVEAR 395 WPGN+R+L N+IE+ + +S I+ + +++ + F + Sbjct: 360 RWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFK 419 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDF 442 + E ++ L+ G + A + + + ++ ++ ++ Sbjct: 420 EEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGINVKEY 466 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 170/461 (36%), Positives = 259/461 (56%), Gaps = 22/461 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L+VDD+ + + L + L +EGY+V+ AES +GL VL E VDL + D+R+ Sbjct: 23 MDPTKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLP 82 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ L + +++ +PVI+++ H D V A ++G F +KPVD+D + ++ +A Sbjct: 83 GMDGLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNA 142 Query: 121 LEQSAP--------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 L + A + R+ + ++ SP M +L E VA + VL+ G+SGTGKE+ Sbjct: 143 LSRRDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKEL 202 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A +H S R PF+ +NC A+P +L+ESELFGH +G+F+GA + R G F+ A GGTL Sbjct: 203 VAAEVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTL 262 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM Q K+LR LQ +V +GS + ++VRII+AT++DL + + G FRED Sbjct: 263 FLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFRED 322 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L++RLNVV L +P L +R +D+P+LA + A + + RL WPGN Sbjct: 323 LFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGN 382 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-------------TFVEARNQFE 399 VR+L NV E+ V ++ I+ A V + + P E R+ E Sbjct: 383 VRELRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDLVE 441 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +Y+ L+ N+T AA+ G RT +K + +H L Sbjct: 442 RDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGLSRA 482 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 170/481 (35%), Positives = 257/481 (53%), Gaps = 46/481 (9%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ L + L EG+ V A +G +G++++ E +LVI D+RM MDG+ Sbjct: 2 AKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 I+++ +PV+I+TA+ + A+ AT+ G F ++ KP + + I+ A+E Sbjct: 62 TALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGR 121 Query: 126 PAT--------------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E EA+V S M ++ + A +D VL+ G+SGTGKE Sbjct: 122 RMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKE 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A++ S R KPF+ INC A+P+ LLESELFG+ +GAFTGA + R G + A GGT Sbjct: 182 LVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGDMP +Q KLLR+LQE+++ LG + I ++VRII+AT+ DL A+A G FRE Sbjct: 242 VFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFRE 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VV+L +P L ER+EDIP LA + L + + + +A+ L WPG Sbjct: 302 DLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPG 361 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------------------- 390 NVR+L N + + + + + + ++QALE P Sbjct: 362 NVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIR 421 Query: 391 -----------FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 F + +R+ L +T GN T AAR+ G +R + ++ L Sbjct: 422 RTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGLRI 481 Query: 440 N 440 Sbjct: 482 E 482 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 165/440 (37%), Positives = 254/440 (57%), Gaps = 8/440 (1%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 +++ +L+ DD+P + +L+ L+ + VVTA G E L+V + VD + D+RM + Sbjct: 15 TNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG+ + ++ V +PVI++TA+G+ + A ++G + F+TKP D D L + + AL Sbjct: 75 VDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 EQSAPAT------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + S + +V S M + + VA +DV+VLI G+SGTGKE+ ++ Sbjct: 133 DYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSR 192 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH SPRN PF+ +NC A+PE LLESELFG+ +GAFTGA + G F+ A GT+ LD Sbjct: 193 AIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLD 252 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM LQ K+LRVLQE + +G R I ++VR+++AT++DL + G FREDLY+ Sbjct: 253 EIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYF 312 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV +++P L ER EDIPLLA+H +++ A V + + M LM +PGNVR+ Sbjct: 313 RLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRE 372 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 L N+I + VAL S V++ ++ + AL E + E R+ + + + Sbjct: 373 LENIIARAVALCSGKVLTLDVLPPQVVEPKPALRPLKEVLLEAERRAFRQAVAVAGLDPQ 432 Query: 416 HAARMAGRNRTEFYKLLSRH 435 A + + K L Sbjct: 433 AVADLLQVDLDYAKKRLKEW 452 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 164/454 (36%), Positives = 270/454 (59%), Gaps = 17/454 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL++DD+P ++L L+ EGY+V TA S E +++N +++++DL++ +G++ Sbjct: 3 TLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + VI++TA G+I AV A +QG F +LTKP+DK+ L I A E+ Sbjct: 63 ILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNL 122 Query: 127 ATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + I+ +S ML++L+ + ++ +VLI G+SGTGKE+ A+A Sbjct: 123 IKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR KPFIAINC A+P+ L+ESELFG+ GAFTGA + + GL ++A+ GTLFLDE Sbjct: 183 IHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++P Q KLLRVLQ+++VR +GS ++VRII+AT+++L + + + +FREDLYYR Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L V++++IP L ER EDIP L + + + ++ V A++ L+ SWPGN+R+L Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGE------NTALPTFVEARNQFELNYLRKLLQIT 410 +VIE+ + + I+ ++ L + +P + E ++K L + Sbjct: 363 ESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKALIKS 422 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 + AAR+ G + F+ L + L +++ +E Sbjct: 423 NFVIAKAARLLGMSYDTFWYRLKKFGL-SDNIRE 455 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 185/471 (39%), Positives = 284/471 (60%), Gaps = 32/471 (6%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 KP +L+VDD+P LL+ L L +GYSVV +S + L E D+ + D++M + Sbjct: 6 DTKPVRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQ 65 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDA 120 + G++L + ++ +P + VI++T H ++ A+AA + G + +LTKP D + + +A+ A Sbjct: 66 LSGLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKA 125 Query: 121 LEQSAPATDERWRE------------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 E+ R E +V S + ++ VA S +VL+ G+SGT Sbjct: 126 AERKMLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGT 185 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+H SPR ++PF+A+NCGAL E LLESELFGH +GAFTGA +++GLF AA+ Sbjct: 186 GKELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAAD 245 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGT+FLDEIGD+P QV+LLRVLQE +++ +GS + ++VR+I+ATHRDLP+ + G+ Sbjct: 246 GGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGK 305 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL+YRLNV+++ +P+L +R +D+PLLA+H LR+ AER VRA + DA++ L Sbjct: 306 FREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYR 365 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA-------------- 394 WPGNVR+L N IE+ V L ++ + A+ G L A Sbjct: 366 WPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYAT 425 Query: 395 -----RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +FE Y+ L++ N++ AAR AG +R+ F ++L ++ D Sbjct: 426 AKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKYRTDVE 476 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 160/449 (35%), Positives = 258/449 (57%), Gaps = 18/449 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + + L L EGY V TA G +GL + DLV+ D + + +G+++ Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 EI+ + VI++TA+G++ +AV A Q G +F+ KP D + L + A+ + Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 128 TDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + E I+ +S MLR+ + +A S +VL+ G+SGTGKE+ A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + F+ IN G++P LLES LFGH +GAFT A+++++GLF+ A+GGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G M Q K+LRVLQ+RK LG ++I ++VRII+AT+ DL + + G+FREDL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+++ +P L +R D+PLL H +++ E + + + +A++ L+ +W GNVR+L Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNYLRKLLQI 409 NVIE+ V L + P I+ L+ + G ++L + E E + +L+ Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEK 441 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 N T AA + + + R ++ Sbjct: 442 VGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 181/450 (40%), Positives = 261/450 (58%), Gaps = 25/450 (5%) Query: 19 KLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGM 78 K + L EG+ VV + EGL +D+V+ D++M + GM L I+ +P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDALEQSAPATDER------ 131 VI++TA ++ AV A + G + +LTKP + D + + A E+ A R Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 132 ----WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKP 187 E ++ +S M + + V+ S +VLI G+SGTGKE+ A+AIH S R KP Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 188 FIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVK 247 F+A+NC AL E LLESELFGH +G+FTGA N++GLF+AA+GGT+FLDEIGD+P QV+ Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 248 LLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 LLRVLQE +V+ +G+N + ++VR+I+ATH DL +A +G+FREDL+YRLNV+++ +P L Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 +R ED+PLLA+H L+ A + V S AM+ L W GNVR+L NVIE+ V LT Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 368 SSPVISDALVEQALEGENTALPTF--------------VEARNQFELNYLRKLLQITKGN 413 + VI + + T A FE YL LL+ N Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFK 443 V+ AAR AG +R+ F +LL ++E+ K Sbjct: 440 VSSAARAAGVDRSNFRRLLKQYEVAGRSMK 469 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 172/448 (38%), Positives = 246/448 (54%), Gaps = 19/448 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL-NREKVDLVISDLRMDEMDGM 65 H+L+ DDDPG+ LL EGY AE G E L + + DL+I D+RM DG+ Sbjct: 9 HILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGL 68 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +++K PVI++TAHG+ A+ A Q G + ++ KP D + + + + Sbjct: 69 TILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQ 128 Query: 126 PATDERW--------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A+ R R+ ++ SP M + +Q VA +D +VLI G++GTGKE+ A I Sbjct: 129 LASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLI 188 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + P + +NC ALPE LLESELFGH +GAFTGAV+ R+G F+ A G++FLDEI Sbjct: 189 HVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEI 248 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+M Q KLLR+LQER+ +G + ++VR+I+AT+RDL + G FREDLYYRL Sbjct: 249 GEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRL 308 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV++L +PAL +R DIPLLA L + S +AM+RL WPGNVRQL Sbjct: 309 NVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLE 368 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENT----------ALPTFVEARNQFELNYLRKLL 407 + IE+ V L+ VI+ + + T E E L++ L Sbjct: 369 HEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVERLALQEAL 428 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRH 435 ++ AAR G + EF K ++ Sbjct: 429 VQHDDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 148/443 (33%), Positives = 234/443 (52%), Gaps = 13/443 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L GY +A+ G L ++ + DLV D++M ++ G + Sbjct: 6 KVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSGFE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + I+ P V+++TA+GS+ AV A ++G +L KP D D L ++ L+Q Sbjct: 66 VLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQKKI 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + ++ S M +L VAQ D +L+ G++GTGKE+ A+A Sbjct: 126 VDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMVAKA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R PF+ INCGA E LLESELFGH AFTGA ++G + A GGTLFLDE Sbjct: 186 IHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P +Q+ LLRVL+E+ +G +I ++ R+I ATH+DL + RG FR+D YYR Sbjct: 246 VGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFRQDFYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ ++IP L R +DIP+LA L + + V ++ L + WPGNVR+L Sbjct: 306 LNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWPGNVREL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 N IE+ V L ++ P ++ + E +L ++L N++ Sbjct: 366 ENAIERAVVLAKERYLTRDDFAFLCRSPAQPFP---QSLRENEKQHLERILSFCGWNISK 422 Query: 417 AARMAGRNRTEFYKLLSRHELDA 439 AA + +R + + + ++ Sbjct: 423 AAAILEISRVTLHSKIRKFDIRP 445 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 256/470 (54%), Gaps = 29/470 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDDD + + + + G SV A G EG ++ DL++SD+RM Sbjct: 1 MDLTSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM + IQ P+ +TA G++ +AV A + G + ++ KP + + + + Sbjct: 61 NVDGMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 121 LE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 LE + +R + + RS M +L AR VA S+ +VLI G+SGTGKE+FA+ IH Sbjct: 121 LEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHE 180 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R+S F+A+NC ALPE L+ESELFG+ +GAFTGAV+ + G F+ A+GGT+ LDE+G+ Sbjct: 181 NSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGE 240 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P LQ KLLRVLQE++V LG + INVRI++ T++ L K + G FREDLYYRLNV Sbjct: 241 IPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNV 300 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 +S+++P L ER EDI LA + A+ + + DA+K L+ WPGNVR+L + Sbjct: 301 ISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHT 360 Query: 360 IEQCVALTSSPVISDALVE-------------------------QALEGENTALPTFVEA 394 IE+ V L VIS+ + + E +A F Sbjct: 361 IERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGT 420 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH---ELDAND 441 + E + K L+ T GN T AA M G L+ + L+ D Sbjct: 421 IAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEYKENGLNIED 470 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 171/444 (38%), Positives = 262/444 (59%), Gaps = 12/444 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 + +VDD+P + K L L EGY V S L + D+V SD+R+ +MDG++ Sbjct: 5 RVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLE 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +I+ ++P V+I+T +GSI A+ A ++G F ++TKPV+ + A E+ Sbjct: 65 LLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGM 124 Query: 127 ATDE-RWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R REA IV SP + L R VA D +VLI G+SGTGK + A A Sbjct: 125 RMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ SPR ++PF+ NCG E+L+ SELFG+ +GAFTGA +++ GL +AA GGT+FLDE Sbjct: 185 LHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G+MP +QV+LL VLQER++ +G + +D+++R+I+AT+RDL + +G FREDL++R Sbjct: 245 VGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVVS +P LA+R EDIPLL H + + + V+ A+ L S+PGNVR+L Sbjct: 305 LNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTAL--PTFVEARNQFELNYLRKLLQITKGNV 414 N+IE+ VALT I + + + A + + E Y+ ++L+ T N Sbjct: 365 ENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTGYNK 424 Query: 415 THAARMAGRNRTEFYKLLSRHELD 438 AA++ G RT ++ L + ++ Sbjct: 425 RLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 172/461 (37%), Positives = 261/461 (56%), Gaps = 20/461 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L+V+DD L K++ ++L EGY +A + E +L++ LV++DL + Sbjct: 1 MSS--GRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G++L +++ P VI++TA G+I AV A + G + FLTKP+ L + Sbjct: 59 GMSGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRC 118 Query: 121 LEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE + + EAIV S ++R L+ A VA +D ++LI G++GTGK Sbjct: 119 LEHHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R +PFI INCGA+P++LLESELFGH +G+FTGA+++++G + A+GG Sbjct: 179 ELVAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+ LDEIG+MP LQV++LR++QER++ +G+ ++VRI++ATHR+L + G FR Sbjct: 239 TVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL VV + +P L ERT DI +L H L + +H STD + SWP Sbjct: 299 EDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA--------RNQFELNY 402 GNVRQL N +E+ V L I+ + + L P V E + Sbjct: 359 GNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDL 418 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + + L+ GN T AA+ +R F L +++ + K Sbjct: 419 ILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKYDFHPDVLK 459 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 167/454 (36%), Positives = 251/454 (55%), Gaps = 23/454 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ + + + L+ EG+ V A SG E ++ E++DL + DL + DG++ Sbjct: 3 KILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +++ P + VII+T +GS+ AV + Q G F ++ KP DAL + AL+ Sbjct: 63 VLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQTL 122 Query: 127 ATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R R I+ +S + Q R +A+ +VLI G+SGTGKE+ A+A Sbjct: 123 KREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH+ S R + FIAINC ++P LLESELFGH +GAFTGA ++GLF+ A GT+FLDE Sbjct: 183 IHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+M +QVKLLRVLQER +R +G+ +DI+I+ R+I+AT+R+L K + FREDL+YR Sbjct: 243 IGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV + IP L ER DI LA + L + R S +A + + +WPGNVR+L Sbjct: 303 LNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEG-------------ENTALPTFVEARNQFELNYL 403 NVIE+ + S P + + Q + A EA + E + + Sbjct: 363 RNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLI 422 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 ++ LQ T NV A R + ++ L Sbjct: 423 QQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 175/462 (37%), Positives = 264/462 (57%), Gaps = 25/462 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ A++L+VDD+ + +LL + L+ EGY V AE G + L +L K DLV+ D+R+ Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M G+ + +K VI+++A+ + AVAA +G + F+ KP+D L Q I + Sbjct: 61 DMSGIDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRS 120 Query: 121 L-------EQSAP---ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L E+ A D + E IV P M + R VAQ+ +LI G+SGTGK Sbjct: 121 LSLRTVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + PF+ +NCG +PE L+ESELFGH +G+FTGAV +++GLF A G Sbjct: 181 ELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG++ PLQVKLLRV+Q+ + +G +I ++ RI+SAT+++L + + G FR Sbjct: 241 TIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ L +P L ER DI +LA + + ++ V S+ A+ L S+P Sbjct: 301 EDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEG---------------ENTALPTFVEAR 395 GNVR+L N+IE+ VAL+++ +I + A+ E T E Sbjct: 361 GNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEIL 420 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E YL+K L+ + GN AA + G + F L + + Sbjct: 421 ADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLNV 462 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 174/453 (38%), Positives = 253/453 (55%), Gaps = 16/453 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K + +LLVDDD LL+ + L L + V TA S E + + D+V+SD+R+D+ D Sbjct: 2 KNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + A +K +P VI+LT +G++ A+ A + G F LTKP+ + L +I+ AL Q Sbjct: 62 GFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALSQ 121 Query: 124 SAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + E IV M ++ + +A + +VLI G+SGTGK + Sbjct: 122 RKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLL 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH R + F+ + CGA+PE LLESELFGHA G+FTGA ++ G F A+ GT+F Sbjct: 182 ARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG A LQVKLLRVLQE + P+GS + ++ R+I AT+ L +A+A G FR+DL Sbjct: 242 LDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NV+++++P L ER DIPLLANH L++ E + FS D + + +WPGNV Sbjct: 302 YYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG------ENTALPTFVEARNQFELNYLRKLL 407 R+L NV+E+ V L P + + A+ + EA E + +L Sbjct: 362 RELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDVL 421 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ + N A G NRT YK + R LD Sbjct: 422 EMHQWNRNATADALGINRTTLYKKMKRLGLDKQ 454 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 169/453 (37%), Positives = 259/453 (57%), Gaps = 17/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 +S +L+VDD+ +L L + L +EG+ TA G +G+ L + D+V++D+RM Sbjct: 5 LSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMP 64 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G+Q+ + ++V P +PVI++TA ++ AV A +G F ++ KP D L + A Sbjct: 65 DVSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRA 124 Query: 121 LEQSAPATDER------------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 E + + + + RS L +L A VA +D +VLI G+SGT Sbjct: 125 AEHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGT 184 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+ IH+ S R F++INCGALPE LLESELFGH +G+FTGAV ++ GLF AA Sbjct: 185 GKEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAAN 244 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GT FLDEIG+ QVKLLR LQ+R+V P+G+ + ++ R+++AT+RDL + + RG Sbjct: 245 HGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGG 304 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FR DL+YRLNV+++ +P L +R +DIP+LA L ++A + + A+ LM Sbjct: 305 FRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAYG 364 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTAL-----PTFVEARNQFELNYL 403 WPGNVR+L N +E+ V L S IS + + + E Y+ Sbjct: 365 WPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEAIERAYI 424 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 + +LQ GN + AA M G + + Y+ L+R+ Sbjct: 425 QWVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 175/499 (35%), Positives = 267/499 (53%), Gaps = 64/499 (12%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDD+ + L L+ GY V AE+G L ++ E DLV++D+RM Sbjct: 2 MGAMGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMP 61 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG+ + +IQ V+PG+PV+I+T + ++ AV A +QG ++ KP + + + I Sbjct: 62 EMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKV 121 Query: 121 LEQSA---------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 + Q P + ++ R LRLLE+AR VA S +VL+ G+ Sbjct: 122 MRQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGE 181 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SGTGKE+FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV ++G F+ Sbjct: 182 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFE 241 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A GGTL LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL +A+ Sbjct: 242 LAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVK 301 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 G FR+DLYYRLNV+ +++P+L ER +DI LLA+ + + + R+ ++ S A +R + Sbjct: 302 DGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFL 361 Query: 346 TASWPGNVRQLVNVIEQCVALTSSPVI------SDALVEQALEGENTALPTFV------- 392 WPGNVR++ N++E+ V L++ + D L + P+ Sbjct: 362 DYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVD 421 Query: 393 ------------------------------------EARNQFELNYLRKLLQITKGNVTH 416 + + E + + L+ T N TH Sbjct: 422 AAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTH 481 Query: 417 AARMAGRNRTEFYKLLSRH 435 AA+M G + L+ + Sbjct: 482 AAKMLGISVRTLRNKLNEY 500 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 156/458 (34%), Positives = 250/458 (54%), Gaps = 22/458 (4%) Query: 1 MSHKP--AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 M+ + LL+++D+ L + L E + A + + +L E +D+V++D+R Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 + + G ++ +++ + + +TA+GS+ +AV A + G + ++ KP+D + L + Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 119 DALEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 + + E I+ S M + E+ + VA S +VL+ G+SGT Sbjct: 120 RIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGT 179 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A AIH SPR + PF+ ++C AL QLLESELFGH +GAFTGA+ R G F+ A Sbjct: 180 GKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAA 239 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GTLFLDEIG++ P QVKLLR L E+ ++ +GSN+ + ++VR+I+AT+++L K + G+ Sbjct: 240 RGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGK 299 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL++RLNVV + +P L ER EDIPLLA L + A + + S +AMK L+ Sbjct: 300 FREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA---------RNQFE 399 WPGNVR+L IE V L I + + + L + + E Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAE 419 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + L++ +G T AA+ G +R + + + EL Sbjct: 420 KRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 171/471 (36%), Positives = 260/471 (55%), Gaps = 33/471 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K A +L+VDDD + L L S GY + TA +G E L+ + + VI+D+RM Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M GM++ I+K+ P PVI++TA+G++ AV A ++G F+ KP + + + + Sbjct: 61 GMGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNV 120 Query: 121 L--------EQSAPATDERWRE-AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + +S P + + I+T +L +LE + VAQS SVLI G+SGTGKE Sbjct: 121 MATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+ ++ S R PF+AINC A+P+ LLESE+FG +GAFTGA+ + G F+ A GGT Sbjct: 181 LFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDE+ +M LQ KLLRV+QE+++ LG + ++VRII+ T+ D+ K + FRE Sbjct: 241 LLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV+ LKIP L ER D+ LL ++ L++ + ++ + F+ +KRL WPG Sbjct: 301 DLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN--------------- 396 NVR+L NVIE+ V + V+ + LE + + P E + Sbjct: 361 NVRELENVIERAVLVCGGNVVLPEHL--YLEDQGSVSPAAEEKTSCSLEEVSTDISGIDL 418 Query: 397 -------QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + E + L KGN T A+ + G + L +++ A+ Sbjct: 419 SRGMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMKAS 469 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 166/449 (36%), Positives = 240/449 (53%), Gaps = 16/449 (3%) Query: 7 HLLLVDDDPGLLKLLGLRL-TSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L VDD+P ++ R+ + V TA SGAE L L D+VI+DL M MDG+ Sbjct: 6 RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGI 65 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L +EI+ + P + ++ILT+ S V A + G + +L KP D + + ++I L A Sbjct: 66 ELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKA 125 Query: 126 ----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + ++ E ++ + M + E VAQ+ +VLI G+SGTGKE+ A Sbjct: 126 AVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIAS 185 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R KPFI INC AL E L+ SELFGH +GAFTGAV+ ++GLF+ A GGTLFLD Sbjct: 186 AIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLD 245 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ QV LLR+L+ + +G I +VR+I AT+RDL A +FREDLYY Sbjct: 246 EIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYY 305 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVVSL+ P L +R DIPLL + L + + + + DAM L WPGN R+ Sbjct: 306 RLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRE 365 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTF-----VEARNQFELNYLRKLLQIT 410 L N+IE V + + + + + E ++K+L+ + Sbjct: 366 LANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIKKVLEES 425 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDA 439 N+ AA + R Y + ++ L Sbjct: 426 NWNLKKAAELLDIARGTLYGKMEKYHLTK 454 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 149/450 (33%), Positives = 251/450 (55%), Gaps = 15/450 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L++DD+ + + L EGY+ A + +G + L D++ D+ + + DG+ Sbjct: 2 ANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 EI+K P + V+I++ HG+I +AV A + G + FL KP+ + + + ++ Sbjct: 62 DGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKFQ 121 Query: 126 PATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 D R ++ S +L L ++ +A ++ V+I G++GTGKE A+ IH Sbjct: 122 LMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIH 181 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R+ F+ INC A+P +LLESE+FGH +GAFTGA ++G F+ + GT+FLDEIG Sbjct: 182 MLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIG 241 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DM Q KLLRVL+ +G N + + R+I+AT+++L ++ G FREDLYYR+N Sbjct: 242 DMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRIN 301 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV L +P L ER +DIPLL NH +++A + ++ + M + WPGNVRQL N Sbjct: 302 VVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKN 361 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPT--------FVEARNQFELNYLRKLLQIT 410 ++E+ V L+ V+S ++G++ + A+ FE +Y+ +LQ Sbjct: 362 LVERMVVLSEDSVMSLDDAPDFIQGKHFPQKSYDVEYEYPLKHAKENFEKHYILNILQNN 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N++ +AR+ RT ++ + + ++ + Sbjct: 422 DWNISRSARILEIERTYLHRKIKAYGIEKS 451 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 165/461 (35%), Positives = 253/461 (54%), Gaps = 29/461 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L + L EGY+V A+ G L +L RE DL+ISD+RM +G++ Sbjct: 3 RILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++++P +PV+++TA S DAV+A + G + ++TKP D + + AL P Sbjct: 63 LLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQP 122 Query: 127 ---------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 E I+ SP M ++ + VA + +VLI G+SGTGKE+ A+AI Sbjct: 123 LPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAI 182 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SP + F+ I C A+PE L ESE+FGH +GAFTGA S+R GLF+ A GT FLDEI Sbjct: 183 HRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEI 242 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q KLLRVLQER+++ +G+ I +R+ISAT++DL + + G FREDL+YRL Sbjct: 243 GELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRL 302 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV +++P L ER D+PLL +H L + A + S+ AM+ L+ +PGNVR+L Sbjct: 303 AVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRELE 362 Query: 358 NVIEQCVALTSSPVISDALV----------EQALEG----------ENTALPTFVEARNQ 397 N+IE+ VA+ +S +I + + G E Sbjct: 363 NIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLAD 422 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + L+ + T AA + + + ++ +D Sbjct: 423 LEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGID 463 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 169/448 (37%), Positives = 253/448 (56%), Gaps = 23/448 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +L+ DDD + L+ +GY V A G + L+ + +V +VI+D+ M ++ Sbjct: 2 ETPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVN 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++ ++P + I +A + + G F +L KP + + L + LE Sbjct: 62 GLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEH 121 Query: 124 SAPAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + + I+ S ML L E VA SD +VLI G+SGTGKE+ Sbjct: 122 QALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ S R+ K F+A+NC A+P++LLESELFGH +G+FTGAV++R G F+ A+ GTLF Sbjct: 182 ARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLRVLQ R++ P+GS R ++VRII+AT+++L +A EFREDL Sbjct: 242 LDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+V+ + +P L ER D+PLL N L + + V+ F M+ L WPGNV Sbjct: 302 YYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQ---------ALEGENTALPT----FVEARNQFEL 400 R+L N++E+ V + ++ VIS + + L GE LP A +FE Sbjct: 362 RELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFEN 421 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEF 428 + + L+ + GN AA + RT Sbjct: 422 RLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 177/471 (37%), Positives = 264/471 (56%), Gaps = 36/471 (7%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDDD L + L EGYSV A SG GL + + DLV+ D++M M G+ Sbjct: 2 SSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE--- 122 + FA I+++ +PV+++TA+G+ A+ AT+ G F ++ KP D + I ALE Sbjct: 62 EAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGH 121 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + A D AI+ SP M + + VAQ+D +VLI G+SGTGKE+ A+A Sbjct: 122 MMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 I+ S R KPF+ INC ALPE LLESELFG+ +GAFTGA S R G + A GGT+FLDE Sbjct: 182 IYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q K+LR+LQER + PLG N ID++VRI++AT+R+L KA+ FREDLYYR Sbjct: 242 IGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L VV++ +P L +R D+ LLA++ + ++ K + +A K + WPGNVR+L Sbjct: 302 LKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA---------------------- 394 N +++ + + + + Q + G + A P+ + Sbjct: 362 ANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDTA 421 Query: 395 -----RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ +R+ LQ+T+GN + AA++ G R + + L Sbjct: 422 RFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNLSIE 472 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 254/470 (54%), Gaps = 35/470 (7%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + ++ +VDDD + +L +T EG E + L+ LN E+ D+++SD+RM +MD Sbjct: 2 QKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I++ P +PVII+TAH + AV A QQG F +L KP D D I+ A+ Sbjct: 62 GLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITH 121 Query: 124 SAPATDERWREAI-------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 E I + +P M + +++S +SVLING+SGTGKE+ A A Sbjct: 122 YREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR PFIA+N A+P+ L+ESELFGH +GAFTGA R+G F+ A GG+LFLDE Sbjct: 182 LHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q +LLRVL E + +G + ++VRII+ATH+DL K + G+FREDLY+R Sbjct: 242 IGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYHR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ +++P L +RTEDIP LA + L++ A+ ++ ++K +M W GNVRQL Sbjct: 302 LNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPT-------------------------- 390 NV +T+S I + + + Sbjct: 362 ENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGKE 421 Query: 391 --FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +A QFE L L T+G+ AAR+ G R + L ++ Sbjct: 422 NILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 156/442 (35%), Positives = 234/442 (52%), Gaps = 12/442 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+D+ +LL L GY A E VL +V+ DL + + +GM+ Sbjct: 2 RVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGME 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ V+++T HG+I AV A + G + FLTKP + I A+E Sbjct: 62 LLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGI 121 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + V S M ++E+ +A SD VLI G+SG GKE+ A Sbjct: 122 KRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASI 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KP +A+N ++P++L+E+ELFG+ +GAFTGA S +EG F+ A+G TLFLDE Sbjct: 182 IHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+M LQ KLLR ++ K +G R+I+ NVRII+AT+R L + + RGEFREDLYYR Sbjct: 242 IGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + IP L ER EDI LA H L ++ ++ F+ A L + W GNVR+L Sbjct: 302 LNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 N++E+ V + I + + + + E Y+ ++L+ N Sbjct: 362 KNIVERAVLFSDGDRIDSEDISCLFTHQESKKS--FKTIKDVEREYITEILKQVNFNKRK 419 Query: 417 AARMAGRNRTEFYKLLSRHELD 438 A+ + G Y+ L + ++ Sbjct: 420 ASEILGIPLRTLYRKLESYGIE 441 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 183/465 (39%), Positives = 259/465 (55%), Gaps = 28/465 (6%) Query: 1 MSHK-PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ +LLVDDDP + K+LG LT G + A G E L +L + VD+V+SD+RM Sbjct: 1 MNESLRGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRM 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 MDG+Q+ AE+ + P +PVI+LTAHG++P AV A + G F+ KP D++ + + Sbjct: 61 PGMDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRK 120 Query: 120 ALEQSA---PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 AL ++ R + RS M + A +VL+ G+SGTGKE+ A+A Sbjct: 121 ALLRAQGEEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ASPR PF+ ++C ALP+ LLESELFG+ +GAFTGA + + G + A GGTLFLDE Sbjct: 181 VHDASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +GD+ +QVKLLRV+QER++ LG + + ++VR ++ATH+ L + + G FREDL+YR Sbjct: 241 VGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + IPAL ER +DI LA H L A+ + TD + L WPGNVRQL Sbjct: 301 LNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP------------------------TFV 392 N +E+ V L+ + VI V Q L + P T Sbjct: 361 QNFLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLE 420 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 R + E + L+ N T AAR+ G +R Y L + L Sbjct: 421 SQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 170/460 (36%), Positives = 252/460 (54%), Gaps = 23/460 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + A +LLV+D+ +L L G+ V + + K DL + D+R+ + + Sbjct: 3 QSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGN 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++L E + P M +II+T + + AV A + G FL KP D D + ID+ ++ Sbjct: 63 GIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKT 122 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 D + ++ + P + +L E L+A SD +VLI G+SG GKE+ Sbjct: 123 RQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVL 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H + R+ KP ++INCGA+PE+LLESELFGH +GAFTGAV R G F+ A GGT+F Sbjct: 183 AKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLRVLQER P+GS + I ++VR+I+ATHRDL +A G FREDL Sbjct: 243 LDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+ L +P L ER +DI LL +H + + ++ K + S + + ++ WPGNV Sbjct: 303 YYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNV 362 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQ-------------ALEGENTALPTFVEARNQFEL 400 R+L N+IE+ L ++ + ++ EN ++FE Sbjct: 363 RELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFES 422 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + LQ + N AA NRT + + + L Sbjct: 423 HLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQPT 462 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 159/461 (34%), Positives = 258/461 (55%), Gaps = 24/461 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 +S A +L+ DD + + + + L+ G+ V+ GAE + ++ D+V++DLRM Sbjct: 24 LSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMV 83 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG+++ ++++ P V++++AHG+I AV A ++G F+ KP D L ++ + Sbjct: 84 PVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKS 143 Query: 121 LEQSAPATD----------------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 164 +E + +V S M R+L+Q R VA + +VL+ G Sbjct: 144 IEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLG 203 Query: 165 QSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF 224 +SGTGKE+ A+AIH+ASPR +PF++I+C A+PE LLESELFGH +GAFTGA+ + G F Sbjct: 204 ESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRF 263 Query: 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAM 284 + A GGTLFLDE+G++P +QVKLLRVLQER+ +G ++++VR++SAT+R+L + + Sbjct: 264 ELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMV 323 Query: 285 ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 G FREDLYYRLNVV + +P L +R D+ LA + + A R V + +A++ L Sbjct: 324 ESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELL 383 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARN 396 WPGNVR+L NVIEQ + ++ + + + A + + Sbjct: 384 RRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGDRSLTDILE 443 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + +G AR+ G + Y L ++ + Sbjct: 444 DLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 177/493 (35%), Positives = 258/493 (52%), Gaps = 57/493 (11%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 PA +L+VDD+ +L L L GY A SG L V++ VD V+ D++M +MD Sbjct: 1 MPASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ A++ +++P +PVI+++ HG+I AV ATQ G FL KP+ ++ L A+ + L+ Sbjct: 61 GLTALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKH 120 Query: 124 SAPATD------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A + + R +V P M R+ + A S+ VLI G++GTGKE+ A+A+ Sbjct: 121 QAAMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARAL 180 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R +PF+ +NC A+P +L+ESELFGH +GAFTGAVS R G F+ A GTLFLDEI Sbjct: 181 HQHSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEI 240 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDMP +Q KLLRVLQE ++ +G ++VR+++AT+++L +A G FREDLYYR+ Sbjct: 241 GDMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRI 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + P L ER ED+P L L +A ++ S DA+ + +PGNVR+L Sbjct: 301 NVVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELR 360 Query: 358 NVIEQCVALTSSPVISDAL-VEQALEGENTALP--------------------------- 389 N++E+ L P+++ +E G N P Sbjct: 361 NLVERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPA 420 Query: 390 -----------------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRT 426 TF E E ++ +L T NVT AAR+ R Sbjct: 421 PAIAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERG 480 Query: 427 EFYKLLSRHELDA 439 FYK + L Sbjct: 481 HFYKKMKALGLRR 493 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 173/465 (37%), Positives = 256/465 (55%), Gaps = 36/465 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L+ DD+ G+ + L EGY V A S E LR+ + DL + D+ + E DG+ Sbjct: 3 HILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDGLS 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 EI ++ V++++ HG+I AV A + G ++ KP D + +AL+ Sbjct: 63 YLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLRGL 122 Query: 127 ATDERW-------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + R R +V SP + L E VA ++ VLI G++GTGKE+ A+++H Sbjct: 123 ERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSLHE 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R S PF+ +NC A+PE L+ESELFGH +GAFTGA+S R G F+ A GG LFLDEIGD Sbjct: 183 GSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGD 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q ++LRVLQER++ +G R I ++VR+++AT+RDLP +AR EFREDL+YRLNV Sbjct: 243 MALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 VS+++P L ER DIP+L H + + FS +A++ L +WPGNVR+L N Sbjct: 303 VSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELKNT 362 Query: 360 IEQCVALTSSPVISDALVEQALEGENT-----------------------------ALPT 390 +E+ + L PVI +E A+ G Sbjct: 363 VERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPDLP 422 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 EAR++FE Y+ +L +GN+ AA+ G +RT ++ + + Sbjct: 423 LREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQW 467 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 172/484 (35%), Positives = 264/484 (54%), Gaps = 55/484 (11%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L L+ G+ V AE+G L ++ ++ DLV++D+RM EMDG++ Sbjct: 4 KILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIE 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA- 125 + +I+ P +PV+I+T + ++ AV A +QG ++ KP + + + + +Q Sbjct: 64 MLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQG 123 Query: 126 --------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + ++ R LRLLE+AR VA S +VL+ G+SGTGKE Sbjct: 124 EAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKE 183 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV +++G F+ A GGT Sbjct: 184 VFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGT 243 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL A+ G FRE Sbjct: 244 LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFRE 303 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNV+ +++PA+ ER EDI LLA+H + + R++ + S + +R + WPG Sbjct: 304 DLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQWPG 363 Query: 352 NVRQLVNVIEQCVALTSSPVI------SDALVE---------QALEGENTALP------- 389 NVR+L N++E+ V L++ P + D L L G P Sbjct: 364 NVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLA 423 Query: 390 ------------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKL 431 + E + + L+ T N THAA+M G + Sbjct: 424 LAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNK 483 Query: 432 LSRH 435 L+ + Sbjct: 484 LNEY 487 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 185/466 (39%), Positives = 285/466 (61%), Gaps = 25/466 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLT-SEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ + LL+VDD+ LL+LL L G V A SG E L VL RE VDL++ D++M Sbjct: 1 MTKET--LLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKM 58 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 EM+G++L +++ P + V+++TAHG I AV A + G + F+TKP D + L +++ Sbjct: 59 PEMNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNK 118 Query: 120 ALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 ALE+S + + +V +S M R+ E ++VA++D++VLI G+SGTG Sbjct: 119 ALERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTG 178 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 K++ +AIH S R S PF+A+NC A+PE +LESELFG+ +GAFT A NR GLFQ A Sbjct: 179 KDLACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHK 238 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT+FLDEIGD+ +Q KLLRVLQE+ ++PLG + + ++VR++++T+RDL + RGEF Sbjct: 239 GTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEF 298 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL+YRLNV+ + +P+L ER EDIPLL NHL+ + ++ + + + + A W Sbjct: 299 REDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDAL------VEQALEGENTALP--TFVEARNQ---- 397 PGNVR+L NVI + + I V+ + G++ + +A+ + Sbjct: 359 PGNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRG 418 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F Y +L T+GNV+HAA++ G R +LL R+ + ++ ++ Sbjct: 419 FHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRRYGIRSDAYR 464 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 258/474 (54%), Gaps = 35/474 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L++DD+ + + LT Y + A +G + + ++ +E DLVI+DL+M+ Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+++ + ++ P V+++T + S+ AV + G F +L KP D L A+ A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 LEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + + +V SP M ++ A +D +VLI G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + F A++CGAL E LL+SELFGH +GAFTGAV +++G+F+ A+GG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDE+ + +Q LLR L+ R+V P+G + ++VR++ AT++DL + +++G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 ED YYR+ V + P L ER DI +A H L + +R+FS DA + L+ SWP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVE--QALEGE-----------NTALPTFVE---- 393 GNVRQL N IE+ V L I+ +E Q GE + +P E Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 394 --------ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 A Q E ++L + L+ GN+T AA AG R+ F L+ +H + A Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKKHGVRA 474 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 171/454 (37%), Positives = 258/454 (56%), Gaps = 25/454 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +L+V+DD L +LL + L GY V A G +GLR E ++V+ D++M +D Sbjct: 8 KGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVD 67 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++ +I+ T HGSI AV + G + +LTKPV D L ID A E+ Sbjct: 68 GIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDKAYEK 127 Query: 124 SAPATDE---------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + +V RSP ++++L+ R ++ VLI G+SGTGKE+ + Sbjct: 128 NRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGKELIS 187 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H+ASPR KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ GTLF+ Sbjct: 188 RAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTGTLFM 247 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+ + P +QVKLLRVL+ R +G N DI ++VR + A++++L + + RGEFREDLY Sbjct: 248 DEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFREDLY 307 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+N++ + +P L ER EDI LA ++ AA R + +AM L SWPGNVR Sbjct: 308 HRINLLPINLPPLRERPEDILPLAYFFMKSAAGREDENWE-ITEEAMAALTAYSWPGNVR 366 Query: 355 QLVNVIEQCVALTSSPVISDALVE----------QALEGENTALPTFVEARNQFELNYLR 404 +L N I + L + I+ L+ Q T LP +V E +++ Sbjct: 367 ELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWV-----VERDHIE 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 ++L+ +GN + AA++ +R Y L R+ LD Sbjct: 422 RVLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 166/444 (37%), Positives = 243/444 (54%), Gaps = 21/444 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+ DDD + L+ +GY V A G + L + V +VI+D+ M ++G+ Sbjct: 4 ARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRVNGL 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +++ ++P + I +A + + G F +L KP + + L + LE A Sbjct: 64 EFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQA 123 Query: 126 PAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + I+ S ML L E VA SD +VLI G+SGTGKE+ A+ Sbjct: 124 LQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVAR 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH+ S R +K F+ +NC A+P+ LLESELFGH +G+FTGAV+ R G F+ A+ GTLFLD Sbjct: 184 AIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM LQVKLLRVLQ +++ P+G+ R ++VRII+AT+++L +A FREDLYY Sbjct: 244 EIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL+V+ + +P L ER DIPLL N+ L + + V++F + M L WPGNVR+ Sbjct: 304 RLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGNVRE 363 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG-------ENTALPT----FVEARNQFELNYLR 404 L N++E+ V L S I+ + + G E LP A FE + Sbjct: 364 LENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQLIL 423 Query: 405 KLLQITKGNVTHAARMAGRNRTEF 428 + L+ T GN AA + RT Sbjct: 424 QALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 270/450 (60%), Gaps = 24/450 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ G++ L EG V+ A GAEGL +L + +V ++++DL M GM L Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + V P V+++TA+G++ AV A ++G + F+TKP+ + + + + +ALE+ + Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 128 TDER---------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + R A++ S R ++ A SD +VL+ G+SGTGKE+ A+++H Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R KPFIAINC A+PE +LE ELFG+ +GAFTGA S+REG F+AA GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSN-RDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 +MP +QVKLLRVLQE ++ LG + R I++R+I+AT+ +L KA+ G FREDLYYRL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+S+ +P L ER +DIPLL H L+ A+++ F+ + DA+ RL +WPGNVR+L Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA--------------RNQFELNYL 403 N +E+ V L+ V+ +A + + AL A + E+ + Sbjct: 378 NAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAVI 437 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + L+ TKG+ AA++ G Y+ L Sbjct: 438 HETLRHTKGDKRLAAKLLGIATRTIYRRLE 467 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 160/448 (35%), Positives = 270/448 (60%), Gaps = 13/448 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A++L+V+D+ L +T G+ VV SG E L+ + +++ +LV++DL + M+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++L I+++QP VI++T H S+ AV A Q+G S++ KP++ D L + +ALE+ Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 124 SAPATDE-RWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + + R R+ +V +S +++L + +A D +VLI G++GTGKE+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ IH SPR+ + F+AINCG +L++ ELFGH R AFTGA ++G+ + A GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 DE+ ++P +QVKLLRVLQER +G ++I +++R++SAT+ DL + + G FR+DL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV+L P L + EDIP+L H L + + + S + + LM S+PGNV Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQ-SIDTISQETLDILMNYSFPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 R+L N+ ++ +AL V S L+ + + + P + + E +++ K++ T GN Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEIRNIDRNKP--LRTLEEVERDHIEKVMLATNGN 419 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDAND 441 T AA++ G +R ++ + R L+ ++ Sbjct: 420 KTQAAKILGIDRVSLWRKMKRLGLEKDN 447 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 174/458 (37%), Positives = 266/458 (58%), Gaps = 24/458 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNR--EKVDLVISDLRMDEMDG 64 +L+VDD+PGL ++L + +GY VV A + + + + LV++DL M + G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + VI++TAH ++ A+ A + G + F+TKP L ALE+S Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 125 APATDERWREA-----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + + A + S M R+ E +A + +VL+ G+SGTGKE Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ S R ++PF+ +NCGALPE L+ESELFGH +G+FTGA + GLF+ A+GGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++PA LQVKLLRVLQERKVRP+G+ +I ++VR+++AT+RD+ + +G FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+ +++P L ER DI LA LR+ A VR +TDA++ L S+PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV-----------EARNQFELNY 402 R+L N++E+ VAL P I + A+ G + + + E + E Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALDEVIGEVERRL 433 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L+ T G AA++ G + L++H L A+ Sbjct: 434 ILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHALAAD 471 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 149/448 (33%), Positives = 253/448 (56%), Gaps = 16/448 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 ++L+VDD+ + L+ LT EGY V T S + + D++ D+ + + +G+ Sbjct: 3 NILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEGLD 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ P V++++ H +IP AV A ++G F FL KP+ + + I+ +Q Sbjct: 63 LLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQIKV 122 Query: 127 A-------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 E + I+ SP ++ L Q VA+++ V+I G++GTGKE+ A++IH Sbjct: 123 KQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHY 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR PF+ INC A+P++L E+E FG+ +GAFT A + + G + A+ GTLFLDE+ D Sbjct: 183 QSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVAD 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q KLLRVL+E++ LGSN I +++R+ISAT++D+ K + +G FR+DL +RL+V Sbjct: 243 MSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + + +P L ER EDI LLAN+ LR+ + +K S + + +WPGNVR+L N+ Sbjct: 303 IPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELKNL 362 Query: 360 IEQCVALTSSPVISDALVEQALEGE---------NTALPTFVEARNQFELNYLRKLLQIT 410 +E+ V L S +I + + + G + +A+ + E ++K L++ Sbjct: 363 MERLVILNSESIIYNKDLPPHMLGNVKLEKEESIPITIRPLKDAKEELEKQMIKKALKVY 422 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELD 438 N+ A+ + + Y+ + ++ L+ Sbjct: 423 NNNLKEIAKALDIDLSSLYRKIKQYNLE 450 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 176/456 (38%), Positives = 258/456 (56%), Gaps = 25/456 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS+K +L+VDD+ + L +L EGY V + ++ EG+ ++ E+ D+V++DLR+ Sbjct: 1 MSNK---ILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+GM+L EI+ P + V+I+TA+G++ AVAAT++G + ++ KP D L + A Sbjct: 58 NMNGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRA 117 Query: 121 LEQ----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ E IV S M +L+E + ++ D ++LI G+SGTGK Sbjct: 118 LQHKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E A A+H S R PFI ++C AL ++LESELFGH +G+FTGA+ R G F+ A GG Sbjct: 178 EKIAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 ++FLD++ D+P +QVKLLRV+QER +G + + INVRII AT +DL +GEFR Sbjct: 238 SIFLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNVV + IP L ER +DIP L N+ L++ RH+ + S + + LM +WP Sbjct: 298 EDLFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEG------------ENTALPTFVEARNQF 398 GNVR+L NVIE VA + S I+ + L+ NT + + Sbjct: 358 GNVRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEV 417 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E + Q T GN A + G RT L R Sbjct: 418 EKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVR 453 >UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMF5_9BACT Length = 449 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 177/448 (39%), Positives = 292/448 (65%), Gaps = 12/448 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM-DGM 65 +LLVDDD LL++L LR S GY+ A++ + + ++ + D + D+R+D+ G+ Sbjct: 3 KVLLVDDDNSLLEILRLRFQSCGYTPFAADNSQKAVSLIKSDVFDAAVFDMRLDDGKTGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-- 123 +L EI+++ +PVI LTA+G+I DAV + ++G FS+LTKP D L ++ A++Q Sbjct: 63 ELLREIKEIDSELPVIFLTAYGTIDDAVQSMKEGAFSYLTKPFDYKELIAKVEKAVQQCS 122 Query: 124 --------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 +A +D + I+ +S + E+ + A+SD +V I G+SGTGKE+ A+ Sbjct: 123 FSRQLLRINAEESDSPISKTIIGKSSKTKMIRERIAIAAKSDANVFIYGESGTGKELVAR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H +S R+ KPF+A N A+PE L+ESELFG+ +GAFTGA ++G F+ A+GGT+F+D Sbjct: 183 MLHQSSLRSDKPFVAFNSSAIPETLMESELFGYEKGAFTGADKKKKGFFEQAQGGTVFID 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI +MP +Q KLLRVL+ R+V PLGS + I +++R+++A++++L + EFR DL+Y Sbjct: 243 EISEMPVSMQTKLLRVLENREVSPLGSEKTIKLDIRLVTASNKNLKDKIENDEFRADLFY 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R++V+ +++PAL +R EDIPLL H L++ +R+ ++FS DA+ +++ WPGN+R+ Sbjct: 303 RIHVIEIEVPALRDRREDIPLLCGHFLKKYTDRYSLGTKSFSGDAIDKMVNYDWPGNIRE 362 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 L NVIE V LTS I ++ A E E + EA+ +FE ++L++L++ +GN++ Sbjct: 363 LQNVIECAVVLTSVGTIKGDNIKLAHESETYTQ-VYREAKKEFEASFLKQLMERAEGNIS 421 Query: 416 HAARMAGRNRTEFYKLLSRHELDANDFK 443 A+R++ R + Y LL +H +D DF+ Sbjct: 422 KASRISDIYRADLYDLLKKHSIDPADFR 449 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 170/467 (36%), Positives = 267/467 (57%), Gaps = 27/467 (5%) Query: 1 MSHKPA----HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISD 56 M+ K +L+VDD+ + L + S+ A +G + L+ ++ + L+ D Sbjct: 1 MTTKETMHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLD 60 Query: 57 LRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 + M ++DG++ +I++++ V+I+TAHGS AV A ++G + ++ KP + + L Sbjct: 61 INMPQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRII 120 Query: 117 IDDALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 +ALE+ A + ++ +S +M + ++ V +DV+VL+ G+S Sbjct: 121 TRNALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGES 180 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 G+GKE+ A IH S R + PFI +NC A+PE L+ESELFGH RG+FTGA R G F+ Sbjct: 181 GSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEM 240 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 A GT+ LDEIGDM Q KLLRVLQE+K LG + ++VRIISATHRDL + + Sbjct: 241 ANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEE 300 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 G FREDLYYR+NVV++KIP L +R EDIPLL N ++ +++H V + S DAMK+L Sbjct: 301 GRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSA 360 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---------TFVEAR-- 395 +WPGN+RQL N IE + LT++ V+ + + + + E +F EA+ Sbjct: 361 YNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKI 420 Query: 396 --NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 FE +++ K L+ GN++H A +R + + +L+ + Sbjct: 421 LIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDLQLNKD 467 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 186/468 (39%), Positives = 278/468 (59%), Gaps = 25/468 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K +LL+D++ GL +++ L GY V S + + + DLVI+D++M Sbjct: 1 MTDKQ-RILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+++ +++ +PVII+TA+ ++ ++ A ++G + LTKP + D L + +A Sbjct: 60 GMTGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNA 119 Query: 121 LEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+Q+ + R + I+ S + +L++ VA D S+LI G+SGTGK Sbjct: 120 LQQAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ AQA+H S R F+A+NCG LPE +LESELFG+ +GAFTGA NR+GL +AA+GG Sbjct: 180 ELIAQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+G++P +Q LLR LQE++ R +G ++VRIISAT+ DL + + G FR Sbjct: 240 TLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNVV+L +P L +R +DIPLLA H + ++ V+AF DAM+ L T WP Sbjct: 300 EDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALE-GENTALP-------------TFVEARN 396 GN+RQL NVIE C+A+ +S IS + Q ++ E +P F EA Sbjct: 360 GNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALE 419 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 +FE + LR LL+ G V AAR AG N Y+ + R+ L ++ + Sbjct: 420 RFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLKKEEYAD 467 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 168/446 (37%), Positives = 265/446 (59%), Gaps = 14/446 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 LL+V+DD L L L +GY+ V SG + L L+RE D+VI+D+++ M Sbjct: 2 TKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMG 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L EI+K + ++++TA+ SI AV A + G +L KPVD + L ++ E+ Sbjct: 62 GLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLREK 121 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 R + +V SP M R+ + VA S SVLI G++GTGKE+ Sbjct: 122 QQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A AIH S R KPF+A++C AL E +LESELFGH +GAFTGA+ +R+G F+ A+GGTLF Sbjct: 182 AHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ +M +QVKLLRVL++ + +G + I ++VR I+AT+R+L + ++ G FREDL Sbjct: 242 LDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+++++P L ER +DIP+L+N+ + A+++K ++ F +A+K L++ W GN+ Sbjct: 302 FYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGNI 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP----TFVEARNQFELNYLRKLLQI 409 R+L N IE+ + L S IS + +++ +N +P + E +++ LQI Sbjct: 362 RELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEIIQRTLQI 421 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRH 435 T G+ AA++ G + + Sbjct: 422 TNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 173/458 (37%), Positives = 262/458 (57%), Gaps = 22/458 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDDPG K+ LT EG+ V+ A SGAE L L ++SDL+M ++DG+ L Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + ++P +PV+++TAH ++ AV A ++G +LTKP+ D L + A+ Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 128 TD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D E IV +P M + VA +D +VL+ G++GTGKE+ A+AI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR +PF+A+NC A+P+ L+ESE FGH +GAFTGAV+ R G F+ A+G TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GD+ +Q KLLRVLQE+++ +G+ + ++VRI++AT+RDL + G FR+DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ L++P L ER +D+P L H LR A+R+ D + WPGNVR+L Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 358 NVIEQCVAL---TSSPVISDALVEQALEGENTALP-----TFVEAR----NQFELNYLRK 405 N+ E+ V + +P+ +P +EAR +FE YL + Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRLVERFEREYLTR 1041 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 LL+ +G + AR AG Y+ + + L +D++ Sbjct: 1042 LLKERRGRIGEVARAAGIAERNLYEKMKAYGLSRDDYR 1079 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 170/459 (37%), Positives = 247/459 (53%), Gaps = 26/459 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+V+D+P L L +++ Y TA G E L + + +V++DL+M Sbjct: 22 MSQE--KVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMP 79 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA---I 117 MDGMQL + ++ VI+LTA GSI AV A + G F +L KPVD L + Sbjct: 80 RMDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNV 139 Query: 118 DDALEQSAPATDERWR-------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE R R +V S M + VA ++VSVLI G+SGTGK Sbjct: 140 SRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGK 199 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ +H SPR +KPF+A+NC A+PE L+ESE+FGH +GAFTGA+ R G F+ AE G Sbjct: 200 ELVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEG 259 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDEIG+MP Q KLLRVL++R+ R LGS + I+VR+++AT+++ +A+A GE R Sbjct: 260 TLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELR 319 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DLYYRLNV ++ +P L E EDIP +A ++ +H + + RL++ WP Sbjct: 320 GDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWP 379 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQ--------------ALEGENTALPTFVEARN 396 GNVR+L N +E+ V L + + + A N + Sbjct: 380 GNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVD 439 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + E + K L+ T N T AA + G + + L + Sbjct: 440 EAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 163/460 (35%), Positives = 255/460 (55%), Gaps = 23/460 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ PA +L+VDD+ + + RL GY V++AESG + L ++ D+++ D+R+ Sbjct: 1 MNSTPARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG+Q + P + V++++AH ++ AV A + G FL KP L +A++ A Sbjct: 61 GIDGVQTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERA 120 Query: 121 L-------EQSAPATDERWR---EAIVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTG 169 L + + +D+R EA+V S M ++ +A SD + VLI G+SG+G Sbjct: 121 LANVRTRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSG 180 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH S R KP + +NC ALPE LLESELFGH RGAFT A + + GLF+ AEG Sbjct: 181 KEVVARAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEG 240 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 G++ LDEIGD+P Q KLLR+L+ + R +G +++ +VR+I+AT+ +L + +A G F Sbjct: 241 GSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRF 300 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R DL++RLNVV + +P L E +D+P+L H + + + K V+ + AM+ L W Sbjct: 301 RADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHW 360 Query: 350 PGNVRQLVNVIEQCVALTSS-PVISDALVEQALEGENTALPTFVE-----------ARNQ 397 PGNVR+L NVIE+ L + I + L E + Sbjct: 361 PGNVRELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGLVLDD 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + ++ GN + AAR+ G +R L +H + Sbjct: 421 VERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 174/454 (38%), Positives = 246/454 (54%), Gaps = 15/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A++ VDDDP +L + V + L + DL+I+DL M Sbjct: 1 MSEA-ANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM L + I+ V +PVII+T + S+ +A+ A + G F+ KP D D L I+ Sbjct: 60 GLSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERT 119 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE + ER R +V M + VA +V+I G+SGTGK Sbjct: 120 LEGERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH P KPF+ I+CGA+ + LLESELFGH +GAFTGA + GL + A GG Sbjct: 180 ELVARAIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEI ++ +QVKLLRV+QE++V +GS R I I+VR I+AT+R+L + GEFR Sbjct: 240 TVFLDEICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DLY+RLNVV + +P L R EDIP L + + A+R+ V F A++RL T WP Sbjct: 300 HDLYHRLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA----LVEQALEGENTALPTFVEARNQFELNYLRKL 406 GNVR+L N++E+ +AL PV+ A AL E Y+ K Sbjct: 360 GNVRELRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLATLERRYILKT 419 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 LQ GN AR G N++ ++ L ++E +A+ Sbjct: 420 LQRLDGNREQTARALGINKSTLWRKLQQYEQEAD 453 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 168/452 (37%), Positives = 264/452 (58%), Gaps = 23/452 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL+VDD+ + + + G+S TAE+ + ++L+ VD+++ DLR+ + G++ Sbjct: 14 NLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGLE 73 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 +I++ +P VI++T + ++ AV A + G F ++TKP + D L +D Sbjct: 74 ALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKL 133 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 T+ R +V R+P M RL A S VLI G+SGTGKE+ A+A Sbjct: 134 TTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARA 193 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H KPFI ++CG+L L+ESELFG+ +GAFTGA +++GL A+GGT+FLDE Sbjct: 194 VHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDE 253 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P LQ KLLR LQE+++RP+G R + INVRI++AT+RDL +A+ +G FR DLY+R Sbjct: 254 IGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFR 313 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV++L+IP L +R +DIPLL H L + ER F R S +A+K ++T WPGNVR+L Sbjct: 314 LNVLTLRIPPLRDRKQDIPLLVGHFLER-TERATGFQRNISDEALKLMLTYDWPGNVREL 372 Query: 357 VNVIEQCVALTSSPVISDALVEQALE-----------GENTALPT-FVEARNQFELNYLR 404 + +++ ALTS P I+ + ++ + A PT + + E + Sbjct: 373 EHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAIL 432 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 + ++ G+ AAR+ G +T Y+ L + Sbjct: 433 EAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 189/472 (40%), Positives = 286/472 (60%), Gaps = 31/472 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRL--TSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 MS + L+++DD+ +L+ L L E V T S GL + R+ VD+++ D+R Sbjct: 1 MSKQ--RLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIR 58 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M EMDGM++ ++++ P + V+++TA+GSI AV A ++G + F+TKP + L + ++ Sbjct: 59 MPEMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLN 118 Query: 119 DALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 ALE+S + V +SP M RL + + +A +D +VLI G+SGT Sbjct: 119 KALERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGT 178 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+H SPR+S+ + +NC A+PE LLESELFGH +GAFTGA N G+F A+ Sbjct: 179 GKELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEAD 238 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 TL LDEIGD+P +Q KLLRVLQER+VRPLGS++ ++VRI+S T++DL + Sbjct: 239 KSTLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRS 298 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRLNVV+L+ P+L+E TEDIPLLA+H LR ++ FS A++ +M S Sbjct: 299 FREDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKS 358 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALV-------------EQALEGENTALPTFVEAR 395 WPGNVR+L N + + + I A + Q + A+ + +A+ Sbjct: 359 WPGNVRELQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAK 418 Query: 396 NQ----FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + F Y+ +LL T+GNVT A+ +AG +RT K++ R+E+ + D++ Sbjct: 419 EELLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRRYEIRSEDYR 470 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 173/445 (38%), Positives = 251/445 (56%), Gaps = 16/445 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+DD + +L L G+ V A G+ + VD+VI+DLRM ++DG Sbjct: 20 TVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFD 79 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +I P+I++TA GSI A+ A + G ++TKP + D L ID AL + A Sbjct: 80 LIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAERAL 139 Query: 127 ATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + I+ S M LL VA S SVL+ G+SGTGKE+ A+A Sbjct: 140 RRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARA 199 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR F+A+N A+PE L+ESELFGH +GAFT A ++ GLF A+GGT+FLDE Sbjct: 200 IHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDE 259 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +M APLQ KLLR LQE+++RP+G+ R ++VR+++AT+RDL + MA G+FREDLYYR Sbjct: 260 IAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYR 319 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR-AFSTDAMKRLMTASWPGNVRQ 355 LNV+ +++P L R +DI LA H L A+ R P + + + L + WPGNVR+ Sbjct: 320 LNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGNVRE 379 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGEN-----TALPTFVEARNQFELNYLRKLLQIT 410 L NVIE+ + L +I+ + + +A Q E ++ ++L+ Sbjct: 380 LANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLEREFIERILKEE 439 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 GN T A+ G +R Y+ L + Sbjct: 440 GGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 168/466 (36%), Positives = 259/466 (55%), Gaps = 31/466 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+ + L L Y V A S E +++ + D++++DLRM G+ Sbjct: 3 PSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ + V+++TA+G+I AV A ++G FLTKPV+ + L I AL+ Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKT 121 Query: 126 PATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + E I+ SP + ++++ +LVA S ++LI G+SGTGKE+ AQ Sbjct: 122 LEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQ 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH +S R+ PF+A++C AL E LLESELFGH RG+FTGA R G F++A+GGTLFLD Sbjct: 182 AIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ A QVKLLR L+ + + +G ++ ID++VR+++AT+R L + + G+FREDL++ Sbjct: 242 EIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFF 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + +P L ER ED+PLL H + +E + A+ L WPGN+R+ Sbjct: 302 RLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRE 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQ-----ALEGENTALPTFVE--------------ARN 396 L N E V L +S+ +E L G PT + Sbjct: 362 LRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTSFSVE 421 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH-ELDAND 441 + E LR+ L ++GN T AA + G +R ++ +++ ELD D Sbjct: 422 ENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQWPELDVVD 467 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 155/448 (34%), Positives = 260/448 (58%), Gaps = 19/448 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+P +L LG LT EG+ VVTA +G E ++ L++ DL++ D+ M MDG+ Sbjct: 3 PSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + +++K P +PV+++T HG+I AV AT+ G + F+ KP+ + + I++AL Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 126 PATDERW-------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + + + +I SP ++ + Q VA +D VLI+G++GTGKE+ A+ IH Sbjct: 123 LEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 + S R+ P + +NC ++ ++ +ESELFGH +GAF GA + G F+ A GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DM Q ++LRVL+ +K + +G R I ++VR+I++T+++L + + +G FREDLYYRLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHK-PFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV + +P L ER +DIP L R+ A + S +A++ LM WPGNVR+L Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELR 362 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENT-----------ALPTFVEARNQFELNYLRKL 406 N++E+ V T + + + A + + ++ +A+ FE+ Y+++ Sbjct: 363 NLVERLVISTKASHVDIRHIPPAYKDCAQEAIQDCGLDVFEVDSYKDAQKAFEIAYIQRQ 422 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSR 434 L + A G +++ K+L + Sbjct: 423 LVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 173/463 (37%), Positives = 259/463 (55%), Gaps = 29/463 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+ DD+P + +L L LT GY V G + L+ L D+++ D+RM + DG+ Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + E P + ++++A+GS A+ A G F ++ KP D + + A E+ Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R + I+ SP + LL Q +A D +VLI+G+SGTGKE+ A+ Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR F+A+NCGA+P L+ESELFGHA+GAFT A + + GLF A+GGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P QVKLLRVLQE ++RP+G NR +NVR+++AT RDL + +A+G+FREDLYYR Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRAFSTDAMKRLMTASWPGNVR 354 LNVV+L++P L ER ED+PLLA + + V + +A L + +WPGNVR Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------------TFVEARNQ 397 +L N +E+ V L P I A + + L + P + A + Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRE 425 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 E +Y+R L+ TKGN T AA + + + + +D + Sbjct: 426 LEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGIDPD 468 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 162/460 (35%), Positives = 254/460 (55%), Gaps = 25/460 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 H +L+VDD+ LL RL +GY+ + A G +++ E + +++ DL+M M Sbjct: 2 HTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ ++ P + +I++T HG+I A+ A ++G + +LTKP + + L I A+E Sbjct: 62 DGLSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVE 121 Query: 123 QSAPATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + + IV SP + +L A+ VA +D VL+ G+SGTGK+ Sbjct: 122 KQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ I+ S R SK F+ IN GA+PE +LESELFGH +GAFTGA + ++GL + A GT Sbjct: 182 VIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+GD+P PLQVKLLR L+ + R +GS ++VRII+AT+ DL K + G FR Sbjct: 242 LFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRS 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL+V+ + IP L +R+EDI L+ L + ++ V+ S A L+ S+PG Sbjct: 302 DLYFRLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPG 359 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV-----EQALEGENTALPTFVEARNQ-------FE 399 NVR+L ++IE+ V L I D + + L T E + E Sbjct: 360 NVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAFLLKNVE 419 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 +++ +L +++ N T A G + Y+ + +EL Sbjct: 420 REHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYELRP 459 >UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=2 Tax=Sulfurihydrogenibium RepID=C1DWP8_SULAA Length = 468 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 166/468 (35%), Positives = 271/468 (57%), Gaps = 25/468 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K ++L+VDD+ +L L EGY V + + E + ++ + DL+ISDL+M Sbjct: 1 MEDK-GYILIVDDEEDILVSFKEILEDEGYKVDISPNPKEAVEMVKQNDYDLIISDLKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP--VDKDALYQAID 118 +M G Q EI+K I+LTA+G++ AV + G F++++KP + D + I Sbjct: 60 QMTGDQFLKEIRKFNNVASFIVLTAYGTVETAVDCMKHGAFNYISKPIDFNDDRTWSMIK 119 Query: 119 DALEQSAPATDERWR-------------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 +A+E + + + E I+T +PLM +L+ + +A D +VLI G+ Sbjct: 120 EAIELAKYKKNTFFYKNYLSTLKNSSDIEGIITVNPLMKEILDYLKKIANFDFTVLIYGE 179 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SG GKE+FA+AIH S R +K F+ INC + + ++ESE FG +G FTGA ++R G+ + Sbjct: 180 SGVGKELFAKAIHQLSNRRNKVFLPINCATISKDVMESEFFGVKKGVFTGADTDRPGILE 239 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A+GGT+FLDEI +MP LQ K LR LQE++VR +G ++VR+I+AT++DL + + Sbjct: 240 LADGGTVFLDEISEMPLDLQAKFLRFLQEKEVRRIGDTVSKKVDVRVIAATNKDLKQLVK 299 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 +FREDLY+RL + ++IP L ER EDIP+LA H L + ++++ ++ F+ +A++ L+ Sbjct: 300 EEKFREDLYFRLEGIKIEIPPLRERKEDIPVLAYHFLEEFNKKYQTDIKGFTEEALQLLV 359 Query: 346 TASWPGNVRQLVNVIEQCVA--LTSSPVISDALVEQALEGENTALPTFVEA-------RN 396 W GNVRQL NV+ + L I + + + G++ + + Sbjct: 360 NYHWEGNVRQLENVVREACIIALAKKEYIDVSCLPSYISGQDNSKAMIFDYNLAKKLNDQ 419 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 F YL+ LL TKGN++ AA++A R KLL ++ +D ++F++ Sbjct: 420 AFTTKYLKNLLAFTKGNISKAAKLANIERQSLQKLLKKYGVDPSEFRK 467 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 170/447 (38%), Positives = 257/447 (57%), Gaps = 11/447 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + A L+VDD+P + +LL + L +A + E +L RE DL ++D+R+ Sbjct: 1 MSRQKA--LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L IQ+ P PV ++TA+GS+ A+ A + G F FLTKPVD L + + A Sbjct: 59 DGSGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATA 118 Query: 121 LEQSAPATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 L P +E + ++ SP M L Q +A+S V I+G+SG+GKE+ A+ IH Sbjct: 119 LRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLIHE 178 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 PR +PF+ +NCGA+P +L+ESE FGH +G+FTGA+ +++GLFQAA GGTLFLDE+ D Sbjct: 179 QGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVAD 238 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLLR +QE+ VR +G +++ ++VRI+ ATH+DL + G FR+DLYYRLNV Sbjct: 239 LPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNV 298 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L++P L ER EDIPLLA +L++ A + DA ++L +PGNVR+L N+ Sbjct: 299 IELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENM 358 Query: 360 IEQCVALTSSPVISDALVEQALEGEN--------TALPTFVEARNQFELNYLRKLLQITK 411 +E+ L I + A + + + E + + L+ T+ Sbjct: 359 LERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEETR 418 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 N T AA+ G L + +D Sbjct: 419 WNRTAAAQRLGLTFRSMRYRLKKLGID 445 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 165/465 (35%), Positives = 257/465 (55%), Gaps = 31/465 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K +L+VDD+ + L L E + TA +G E +++ VD++++D++M Sbjct: 1 MNKK--KILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++L +++ ++P P I+++A+ V A + G + F+TKP D L + A Sbjct: 58 GMNGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTA 117 Query: 121 LEQS--------------------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV 160 ++ S A + I+ +S M +L + +A + SV Sbjct: 118 VQASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSV 177 Query: 161 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNR 220 LI G++GTGKE+ A+AIH AS R+ K FIA++C AL L ESELFGH +G+FTGA R Sbjct: 178 LITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKR 237 Query: 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDL 280 G F+AA+GGTLFLDEIG++ A QVKLLR+L+ R +G N + + R+I+AT+RDL Sbjct: 238 IGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDL 297 Query: 281 PKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDA 340 K + GEFREDLYYRL+V++L++P L +R EDIP L H L + ++ V+ F+ DA Sbjct: 298 RKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADA 357 Query: 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN---- 396 M RL T WPGNVR+L NV+E+ L+ + + + L + + Sbjct: 358 MARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKA 417 Query: 397 ----QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + E + K L+ + N T AA G +R ++ L + + Sbjct: 418 LDVAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQFGI 462 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 176/469 (37%), Positives = 258/469 (55%), Gaps = 33/469 (7%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 LL+VDD + L L +E Y+V A +G E L L +DL+++DL+M+ M Sbjct: 8 PTRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPM 67 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ L +V P + VI++TA GSI AV A + G + ++TKP + L ++ ALE Sbjct: 68 DGLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALE 127 Query: 123 QSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 ++ D A+V RS M L + VAQSD +VLI G+SGTGKE+ Sbjct: 128 RARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKEL 187 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H S R ++ F+ +NC A+ E LLESELFGHA+GAFTGAV +R GLF+ A+GGTL Sbjct: 188 VARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTL 247 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DE+ + Q KLLR LQE +VR +G + + ++VRI++AT+RD+ + FR+D Sbjct: 248 FIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQD 307 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV+L++P L ER ED+P LA H L +A R P + S A+ LM+ +PGN Sbjct: 308 LYYRLNVVALRVPPLRERLEDVPALAEHFLERANAR-SPNPKRLSAAAVSHLMSYGFPGN 366 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE----------------------QALEGENTALPT 390 VR+L N++EQ AL + AL +A PT Sbjct: 367 VRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGPT 426 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + + E + + + L+ ++ A G + T ++ + R L Sbjct: 427 LAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKRLNLRP 475 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 595 bits (1536), Expect = e-169, Method: Composition-based stats. Identities = 175/441 (39%), Positives = 253/441 (57%), Gaps = 4/441 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + +L VDDDP +L++L +RL S GY VVTA GAE L VL + V LVISD+RM Sbjct: 5 AQTRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPG 64 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI---- 117 MDGM+L E+++ +P+I LTAHGSIP AV A + G +LTKP D L + Sbjct: 65 MDGMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVF 124 Query: 118 DDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A A + +V +S M L VA DV+VL+ G+SGTGKE+ A I Sbjct: 125 ARAAGNDATRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLI 184 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR + P + ++CG+ P LLESELFGH +G+FT AV +++GL + A GTLFLDEI Sbjct: 185 HRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEI 244 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q++LLR L+ ++R +G R+I ++ R+I+AT+ D+ + +A G FREDL YRL Sbjct: 245 GNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRL 304 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV++ +P L ER EDIP+LA H RQ + M LM WPGNVRQL Sbjct: 305 KVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 N +E V L + V++ ++ L G+ + ++ E + + L+ A Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKGPDRAGESLSLDESEKTAIVRALEQANWVQKAA 424 Query: 418 ARMAGRNRTEFYKLLSRHELD 438 A + G +R + ++ ++ Sbjct: 425 APLLGVSRRALNYKIQKYGIE 445 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 163/449 (36%), Positives = 247/449 (55%), Gaps = 12/449 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K A +L+VDD+ L L G+ ++ L + + DL++SD+ M Sbjct: 1 MTAK-AEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG+ L +++ PV++++ I AV AT+ G FL KP+ D L +++A Sbjct: 60 GRDGLTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENA 119 Query: 121 LEQSAPATDER------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L+ T+ R + IV + M R++ Q VA S+ V I G++GTGKE+ A Sbjct: 120 LKLKRLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H SPR + PFI +NC A+P +L+ESELFGH +G+FTGA G F+ A GTLFL Sbjct: 180 RTLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP +Q KLLRVL+E +V +G ++ I ++VR+I ATHR+L + G+FR+DL+ Sbjct: 240 DEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLF 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+ V L +P L R EDIP+L H Q ++ F+ +A++ L SWPGNVR Sbjct: 300 HRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVR 359 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----TFVEARNQFELNYLRKLLQI 409 ++ NV+E+ + L + + A VE AL TA Q+E + LQ Sbjct: 360 EMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYEREVILAELQR 419 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 K ++T+ A+ G R+ YK +D Sbjct: 420 QKHHITNTAKALGLERSHLYKKCQALGID 448 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 165/455 (36%), Positives = 254/455 (55%), Gaps = 39/455 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L +A+SG E L++L + VD++I D+RM + G++ Sbjct: 22 SILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLE 81 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 EI+K+ P V+I+TA+G+ A+ A + G + ++ KP + L I ALE S Sbjct: 82 TLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKL 141 Query: 127 ATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ +S M ++ + VA ++ +VLI G+SG+GKE+ A+ Sbjct: 142 TKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVAR 201 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AI+ S R +KPFIAINC A+PE LLESELFGH RG+FTGA++ R G F+ +GGT+FLD Sbjct: 202 AIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLD 261 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+MP Q K+LRVLQE + LGSN I +VRII+AT++DL A+A+ EFR DL+Y Sbjct: 262 EIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFY 321 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + +P L ER EDIP L +H L + S+ AM+ L+ WPGN+R+ Sbjct: 322 RLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRE 381 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG------------------------ENTALPTF 391 L NVI++ + L +S I + + + ++ + Sbjct: 382 LENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSDL 441 Query: 392 VEARNQFELNYLRK----LLQITKGNVTHAARMAG 422 + R + + L + +L+ +G+ + A R+ G Sbjct: 442 RDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 167/474 (35%), Positives = 241/474 (50%), Gaps = 39/474 (8%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + + +VDDD + +L L + + E L L + D++ISD+ M + D Sbjct: 2 QKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDND 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L +++ P +P+II+TAH + AV A QQG F +L KP D D + AL Sbjct: 62 GLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALNY 121 Query: 124 SAPATDERWR--------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 I+ +P M + +++S +SVLING+SGTGKE+ A Sbjct: 122 YRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIAD 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SP+ + PFIA+N A+P+ L+ESELFGH +GAFTGA R+G F+ A GG+LFLD Sbjct: 182 ALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q +LLRVL E + +G I ++VRII+ATH+ L + + G+FREDL++ Sbjct: 242 EIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLFH 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ERTEDIP LA + L Q A++ + + LM+ W GNVRQ Sbjct: 302 RLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVRQ 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEG-------------------------------E 384 L NV ++SS +I + L+ E Sbjct: 362 LENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTALE 421 Query: 385 NTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 N + Q E L L TKG+ AAR+ G R + L + Sbjct: 422 NNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 175/466 (37%), Positives = 251/466 (53%), Gaps = 31/466 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L++DD+PG+L L L +V TA + +GL + RE+ D VI D+R+ +M G+ Sbjct: 2 PKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 F I++ P +PVI++TAHGS A+ AT++G F +L KP+D L + + A E Sbjct: 62 DAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRL 121 Query: 126 ------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 P D E IV + P ML + + +A DV VLI G+SGTGKE+ Sbjct: 122 AQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A++ SPR+ KPF+AINC A+P+ LLESELFGH +GAFTGA R G F+ A+GGT+F Sbjct: 182 ARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDMP Q K+LR+LQ+++ +G N + +VR+I+AT+RDL + +FREDL Sbjct: 242 LDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YRLN ++ +P L +RT DI L +H + A + K VR A+ L + WPGNV Sbjct: 302 LYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-------------------A 394 R+L N + V VI+ + +L G +E Sbjct: 362 RELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQV 421 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L +L+ GN AA G +RT L L Sbjct: 422 THTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGLGVE 467 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 152/443 (34%), Positives = 238/443 (53%), Gaps = 14/443 (3%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L+VDD+P + + +T G A G E + ++ D++ D+RM M GM++ Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPAT 128 I+ V+++T + A + G F +L KP D + I A + SAP Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 129 DE-----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 ++ SP+M L + VA +D +VLI G+SGTGKE+ A+AI Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R F+ ++C AL E LLESELFGH +G+FTGA+ +++GLF+ A GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ +Q KLLRV+QER+ +G I +++RI+ A++RDL A+A +FREDL+YRL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V+ + +P L ER +DI L N+ + + + S +AM L++ +WPGNVR+L Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGNV 414 N IE+ + L VI + Q + + L +F + + E +Y+R +L T G + Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGI 430 Query: 415 THAARMAGRNRTEFYKLLSRHEL 437 AA + G NR + ++ L Sbjct: 431 QKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 173/457 (37%), Positives = 255/457 (55%), Gaps = 16/457 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S K L+++DD +++ L Y V S A+ + + R D +++DLRM Sbjct: 3 SAKKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG++ Q P +PVI++TA ++ AV A + G F +L KP + + L + A+ Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 122 EQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + IV +S M L+ +A SDV +LI G+SGTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A H S R P++A+N A+PE L ESELFGH +GAFTGA R G F AEGGT Sbjct: 182 LLARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G +P LQ KLLRVLQ+ + P+GS + NVR+++AT+ DL + + G+FRE Sbjct: 242 LFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFRE 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL++RL VV L++P L ER EDIPLL HL+++ A R +AM+ L+ WPG Sbjct: 302 DLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPG 361 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-----ARNQFELNYLRKL 406 N+R+L + IE+ + L I+ A + L A E AR+ +E +L + Sbjct: 362 NIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLEDV 421 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 L+ G V AA ++G +R+ FY+ L+RH L D K Sbjct: 422 LREAGGQVARAAELSGLHRSTFYEKLARHGLADKDAK 458 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 176/453 (38%), Positives = 251/453 (55%), Gaps = 19/453 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +LLV+D+ + + L+ GY V A++ L+R DLVI+DLR+ M Sbjct: 2 TPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMS 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM+L I+++ PG VI++TA + AV A + G F FL KP D L A++ Sbjct: 62 GMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRF 121 Query: 124 SAPATD------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + ER + SP ML++ ++ R +A + V VL+ G SG+GKE+ A A+ Sbjct: 122 LDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGAL 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R +PFI INC ALPEQLLESELFGH +GAFTGA R G F+AA+GGTLF DE+ Sbjct: 182 HRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEV 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP PLQ KLLRVL++++V P+G N +NVR + AT R+L +A+A G FREDLYYR+ Sbjct: 242 GEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRI 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + +P L ER D+ LL LR+ H+ S A L+ +PGNVR+L Sbjct: 302 NVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVRELR 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP------------TFVEARNQFELNYLRK 405 N +E V L + I + + + ++P + E +FE + + Sbjct: 361 NAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIME 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ T G AA + G +R + + L +D Sbjct: 421 ALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 176/461 (38%), Positives = 251/461 (54%), Gaps = 29/461 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS HL ++DDDP + +L GY V E E R L+ + D +ISD+RM Sbjct: 1 MSQAQ-HLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG+ L +I++ P +P++I+TAH + AV+A + G F +L KP D + + A Sbjct: 60 GTDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKA 119 Query: 121 LEQSA----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + + ++ I+ S M + ++ S VSVLI G++GTGKE A+A Sbjct: 120 MAHRSKPEVRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVARA 179 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR+ KPFIA+N A+P L+ESELFGH RGAFTGA R+G F A+GGTLFLDE Sbjct: 180 LHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLDE 239 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q +LLRVL E + P+G+++ + +NVR+I+ATHRDL +A+A EFREDLY+R Sbjct: 240 IGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYHR 299 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ L++PAL ER +DIPLLA + L+Q+A + + S A+ +L WPGNVRQL Sbjct: 300 LNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQL 359 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA---------------------- 394 NV + + +S + L ++ L Sbjct: 360 ENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNMT 419 Query: 395 --RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 E LR L+ G+ AA G R + L Sbjct: 420 PIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 160/459 (34%), Positives = 240/459 (52%), Gaps = 23/459 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 + LL+VDD+ L++ L LT G+ A L + D+++SDL M Sbjct: 7 NPRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGT 66 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+QL + P + II+T G+I AV A + G F ++ KP + +D A+E Sbjct: 67 DGIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAME 126 Query: 123 QSAPATD-------------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 + E R IV P + ++++ VA + +VL+ G SGTG Sbjct: 127 VRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTG 186 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+A+H S R KP + +NC L E LLESELFGH +GAFTGA + GLF+ AEG Sbjct: 187 KELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEG 246 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DE+ +M LQ KLLRVL++ R +GS ++ +VRII+AT++ L G F Sbjct: 247 GTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRF 306 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL++RL+V+++ +PAL +R ED+P L H L + A L W Sbjct: 307 REDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDW 364 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQAL--------EGENTALPTFVEARNQFELN 401 PGN+R+L NV+E+ L VI+ + L GE A T + ++ E + Sbjct: 365 PGNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRVERH 424 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++R +L GN AA+ G +R Y+L+ +++L Sbjct: 425 HVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDKYKLSGE 463 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 182/449 (40%), Positives = 253/449 (56%), Gaps = 13/449 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K A +LLV+DD LL L EGY +V E G L+ L R+ DLV+SDLR+ Sbjct: 1 MS-KTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDD 119 ++G++LF Q P ++LTA G++ +AVAA ++GV FLTKP+ D L + Sbjct: 60 GLNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRR 119 Query: 120 AL-----EQSAPATDERWREAI-----VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 L E+S ER + + M ++ VA + +VLI+G+SGTG Sbjct: 120 TLAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTG 179 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+ IH ASPR PF+A+NC A+PE LLESELFGH +GAFTGA R+G F+ A G Sbjct: 180 KELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASG 239 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIG++P LQ K LRVLQER +G NR++ +VRII+AT+RDL + + F Sbjct: 240 GTLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRF 299 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRL+V + +PAL +R + +P+L +LLR+AA + V+ A+ + W Sbjct: 300 REDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALE-GENTALPTFVEARNQFELNYLRKLLQ 408 PGN+R+L NVIE+ V L V L + + +P + E N + L Sbjct: 360 PGNIRELQNVIERAVILCKGQVTLLDLPGGVRQVTASGVIPKSNGSLRDRERNDILDALA 419 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N AA G ++ L + L Sbjct: 420 TCGNNRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 161/505 (31%), Positives = 253/505 (50%), Gaps = 75/505 (14%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE-KVDLVISDLRMDEMDG 64 + +L+VDDD + LG L S GY + TA SG EG+ + K DL++ D+RM + G Sbjct: 8 STILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISG 67 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++ ++ + ++++TA G+ A+ A + G + ++ KP D D + + + A+ S Sbjct: 68 IETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSS 127 Query: 125 APATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + ++E IV SP M + + VA SD +VL+ G+SGTGKE+ A Sbjct: 128 QDLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIA 187 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + I+ S R+ PF+A+NC A+P+ L+ESELFGH +G+FTGA + R G F+ + GT+FL Sbjct: 188 KCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFL 247 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM Q K+LRVLQE +++ +G I ++VR+I+AT++DL K + EFREDLY Sbjct: 248 DEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLY 307 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV +++P+L ER ED+P + + +L+ + K V S DA+ L+ WPGNVR Sbjct: 308 YRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVR 367 Query: 355 QLVNVIEQ--------CVAL---------------------------------------- 366 +L NV+ + + + Sbjct: 368 ELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQASAA 427 Query: 367 ---TSSPVISDALVEQALEGENTALPT-----FVEARNQ--------FELNYLRKLLQIT 410 + + L E +LP + E R + E + + + T Sbjct: 428 ETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIGET 487 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 GN AA + G R K L + Sbjct: 488 GGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 180/476 (37%), Positives = 275/476 (57%), Gaps = 33/476 (6%) Query: 1 MSHKPAH-------LLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDL 52 M+ PA+ +L+VDDD +L +L L + V T SG L L+R + D+ Sbjct: 1 MTLPPANPEHEKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDV 60 Query: 53 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 112 + +DLRM +DGM L ++++ P + VI++T +G+I AV + ++G + F+ KP D++ Sbjct: 61 ITTDLRMPGLDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQER 120 Query: 113 LYQAIDDALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLI 162 + +++ LE+ + R+ + + S M + + R VA ++V+VLI Sbjct: 121 IVHSLERCLERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLI 180 Query: 163 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREG 222 G+SGTGKE+ +A+H S R +KP + +NC ALP ++LESELFG+ +GAFTGA ++ G Sbjct: 181 RGESGTGKELAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSG 240 Query: 223 LFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPK 282 F A+G TL LDEIGDMP LQ KLLRVLQE++V PLG + ++VR++++T++DL Sbjct: 241 YFLEADGSTLLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEA 300 Query: 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMK 342 +A+G FREDL YRLNVV++ IP+LAER EDIPLLA H L++ A + F+ + Sbjct: 301 KIAQGLFREDLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQ 360 Query: 343 RLMTASWPGNVRQLVNVIEQCVALTSSPVISDALV------EQALEGENTALPTF----- 391 L+ W GN+R+L N +++ V LTS P I+ A + + +PT Sbjct: 361 ELLRRRWKGNIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPY 420 Query: 392 ----VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 E F YL + + GNVT AA+ +G R F +LL +L A F+ Sbjct: 421 NEAKREVLTSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLRVFDLKAESFR 476 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 168/434 (38%), Positives = 247/434 (56%), Gaps = 1/434 (0%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A++L++DDD + +LL L Y V + GA +NR + ++V+ D ++ + G+ Sbjct: 3 ANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATGL 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L I+K P VI+LT H + AV A ++G F F KP D ++L I ALE + Sbjct: 63 DLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIRS 122 Query: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 AI + +M ++ R VA SDVS+LI G+SGTGKE+ A IH++S R S Sbjct: 123 LREAVSTGNAIF-QCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIHSSSHRAS 181 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 P I INC ALP +L+ESELFG +GAFTGA S+REGLF+ AEGGTL LDE+ +MP Q Sbjct: 182 GPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELSEMPIDTQ 241 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLRVLQE++VRP+G + RII+AT+R +A+ G+ REDL+YR++ VS+ +P Sbjct: 242 SKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRISAVSVHLP 301 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L ER EDI LA L++ + + + F+ +A +RL + WPGNVRQL N +++ V Sbjct: 302 PLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQNEVQRAVL 361 Query: 366 LTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNR 425 L ++ + + T E N + ++L+ T GN A+ G R Sbjct: 362 LCEGKLVDAPDLSITAPANESTGDTSYTLLEGVERNTIVQMLKETGGNKLETAKRLGIGR 421 Query: 426 TEFYKLLSRHELDA 439 Y + + ++ Sbjct: 422 QTLYNKIKAYGIET 435 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 162/453 (35%), Positives = 257/453 (56%), Gaps = 16/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +P +++ +DD + +L+ L +V+ ES E L + +V +V++DLRM Sbjct: 1 MNAQPV-VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM++ ++ P VI++T H ++ AV + + G F ++ KP + L ++ A Sbjct: 60 RIDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERA 119 Query: 121 LEQSAPATDE-RWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + + R RE I+ RS M + A D SVLI G+SGTGK Sbjct: 120 LSHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH SPR F+AINC A+PEQ++ESELFG+ +GAFTGA + GLF+ A GG Sbjct: 180 ELVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDE+ + LQ KLLRVLQ+ LG +NVR+++AT+RD+P +A+ FR Sbjct: 240 TIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL V+ + IPAL +R +D+PLLAN+ + + A+R V ST + LM WP Sbjct: 300 EDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-----ARNQFELNYLRK 405 GNVR+L NVI++ + L VI + ++ + ++ + E+ ++RK Sbjct: 360 GNVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRK 419 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ T G+ A + G +++ ++ + R+ ++ Sbjct: 420 TLRETNGDRALCAEILGIDKSTLWRKIKRYSIE 452 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 168/449 (37%), Positives = 250/449 (55%), Gaps = 23/449 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+VDDD + + RL+ G+ + A + L + R D+ + D++M M G+ L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 A + P VI+LT GSI AV A + G F +LTKP L I+ A ++ Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 128 TDERWREAI----------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + + I + +S M L + S+ ++LI G+SGTGKE+ A+A+ Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H AS R +P + INC ALPE LLESELFGH +GAFTGAV+ + GLF+ A+G TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP LQ KLLRVL++ +R +GS ++ +NVRI++AT+R + + G FREDLYYR+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+SL++P L RT DIPLL H L + A+ L +WPGNVRQL+ Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGKDWR--------IEPTALSALEQYAWPGNVRQLI 360 Query: 358 NVIEQCVALTSSPVISDALVEQAL--EGENTALPTFVEARNQF---ELNYLRKLLQITKG 412 N IE+ + I + + LP ++ + + + ++L+ KG Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEVLKREKG 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAND 441 N + AARM G +R + Y+LL + ++ + Sbjct: 421 NKSRAARMLGIDRRKLYRLLEKFTIETGE 449 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 164/452 (36%), Positives = 250/452 (55%), Gaps = 17/452 (3%) Query: 1 MSH--KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 MS +P +L++DDD L + + L G+S A G G+ L +E D+V++DL+ Sbjct: 1 MSAPAEPLQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLK 60 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M ++ G+++ ++++P V ++T + AV A ++G +L KP+D L I+ Sbjct: 61 MADLHGLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIE 120 Query: 119 DA-------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 ++ E ++ E +V SP M R+L+ + A S SVLI G++GTGK+ Sbjct: 121 NSAKRVGTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKD 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A+H PR +KPF A+NC L E LL+SE+FGH +GAFTGA R G F+ A GGT Sbjct: 181 LAARALHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGDMP LQ KLLR L+ +V +G+N + ++VRII+AT++DL K + G FR+ Sbjct: 241 LFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQ 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL V ++K+P L E EDIP L +H L++ A R V + K WPG Sbjct: 301 DLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQ------ALEGENTALPTFVEAR--NQFELNYL 403 NVR+L N++ + L ++ + A E P + R ++ E Y+ Sbjct: 361 NVRELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYI 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 K L +T GN AAR+ + Y+ + Sbjct: 421 EKALDLTGGNREEAARLLNISERTLYRKIQEW 452 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 162/434 (37%), Positives = 255/434 (58%), Gaps = 7/434 (1%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ +L L L G+ AE+G + L L+ + D+++ D++MD MDG+ Sbjct: 2 KILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGLT 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA- 125 + + +PVI++TA ++ AV + + G +LTKPVD L A++ EQS Sbjct: 62 FLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKINEQSGD 121 Query: 126 -PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 E +R V + ++EQ +LVA +D +VLI G+SGTGKEI A++IH+ S R Sbjct: 122 VLTPVENYRFGGVYTQEGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDNSKRA 181 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 +P++AINC AL E ++ESELFGH +GAFT AV + +GLF+AA+GGTLFLDEIG++ + Sbjct: 182 QRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGELSLNV 241 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLRVLQE +G R + NVRI++AT+R+L K +G+FREDLY+RL V +++ Sbjct: 242 QAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVFPVEV 301 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER E+I L + + AE+ +++ +++L +PGN+R+L N++E+ + Sbjct: 302 PPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIVERSI 361 Query: 365 ALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRN 424 LT+ + + + L + E + + K L+ T GN T AA + + Sbjct: 362 ILTTGTKLEPVTLPAFGTERDGGL-----SIRGNERDLIIKALKKTGGNKTKAAEILQIS 416 Query: 425 RTEFYKLLSRHELD 438 R + L +L+ Sbjct: 417 RRTLHNKLKEFDLE 430 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 175/449 (38%), Positives = 259/449 (57%), Gaps = 19/449 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + A +L+VDD + ++L LT +GY V A GA+ + L D V+ DLRM Sbjct: 1 MSSR-ARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQ 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG + +K+ P +PV+++TA G + AV A ++G F + TKP D + +++ A Sbjct: 60 DVDGFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERA 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LEQ T+ R + A+V S M L VA S VL+ G+SG+GK Sbjct: 120 LEQRRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H R + PF+A+NC ALP LLESELFGH +GAFTGA + R GLF A+GG Sbjct: 180 ELVARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIGDM LQ +LLRVL++ +VR +G++ ++VR+++ATH+DL + G FR Sbjct: 240 TLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF-VRAFSTDAMKRLMTASW 349 D++YRLNVV+L++P L ER EDIP L H L+QA R+ V+ FS + + L W Sbjct: 300 ADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENT-------ALPTFVEARNQFELNY 402 GNVR+L N++++ V L S+ V+ + L + + A + Q E Y Sbjct: 360 AGNVRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQLETEY 419 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKL 431 + + GN T AA + G + + ++ Sbjct: 420 IAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 165/458 (36%), Positives = 253/458 (55%), Gaps = 22/458 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + LG L EGY V+ AE+GA+ L ++ E DLV+ D+ M MDG+Q Sbjct: 5 ILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGIQT 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL------ 121 +I+ + P + V++++ HG+I AV AT+ G F F+ KP D + I +AL Sbjct: 65 LEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKELR 124 Query: 122 -EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E A +V S + L Q + +A + VLI+G+ G GKE+ A+AIH+ Sbjct: 125 KENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARAIHHY 184 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R KPF+A+NC A+PE LL ELFGH RGA+TGA S + G A+GGT+FLDE+ ++ Sbjct: 185 STRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLDEVHEL 244 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q +LLR+L + G +R + I+VR+++AT R L +A+ G FREDLY L VV Sbjct: 245 SLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQFLQVV 304 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 ++ L ER+EDIPLL H +R R + F A+ L + WPGN+R+L N++ Sbjct: 305 PFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRELKNIV 364 Query: 361 EQCVALTSSPVISDALVEQALEGEN---------------TALPTFVEARNQFELNYLRK 405 E+ + + + PVI+ + + G N A+ + AR +FE +++ + Sbjct: 365 ERILIMAAGPVITADDLPALMPGGNCKASSRLQEAAEQGEAAVGSLRSARERFERDFILQ 424 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 L + N+ AA + RT + L ++ L D + Sbjct: 425 TLLRSAWNLDKAAALLEMERTVLQRKLLQYGLTPEDER 462 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 173/475 (36%), Positives = 248/475 (52%), Gaps = 41/475 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+D+ + LL V A + AE L RE+ DL++ D+R+ + DG + Sbjct: 5 KILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDGDGQK 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 ++ + V+++T +GS+ AV + G F ++ KP + + A Sbjct: 65 FLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQTYRQL 124 Query: 127 ATDERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 R +V RSP M+RL + VA +D +VLI G+SGTGKE+ A+ + Sbjct: 125 LRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFY 184 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 SPR S+ FI +NC A+ E L+ESE FGH RGAFTGA REG F+ A GTL LDE+ Sbjct: 185 RRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVS 244 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++PA LQ KLLRVLQER+ +G +R I +NVRII+ ++RDL + + +GEFR+DLYYRLN Sbjct: 245 EIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLN 304 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V + +PAL ER EDI LLA+H LR+ A +H V F+ A L+ WPGNVR+L N Sbjct: 305 VFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQN 364 Query: 359 VIEQCVALTS-SPVISDAL-------------VEQALEGENTALPTFVEA---------- 394 +E+ V L+ ++ A +E A E ALP A Sbjct: 365 TVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTV 424 Query: 395 ---------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ E +R L+ T GN T AA G + L + L + Sbjct: 425 TDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRLAGD 479 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 179/450 (39%), Positives = 255/450 (56%), Gaps = 13/450 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ L + L EG+ V A GA LR+L ++ +LV++D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DGMQL + I++TA G + AV A + G + +LTKPVD L + A Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 LE + ++ S M +++ A VAQSDV+VLI G+SGTGKE Sbjct: 121 LELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ IH S R KPFI +NC AL E L+E+ELFGHA+G+FTGAV+++ G F A+GGT Sbjct: 181 LVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGD+ A Q LLRVL++ R +G +NVR+I+AT++ L +A+A G+FRE Sbjct: 241 LFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRL +V + +P L ER EDIPLL + L ++HK R ST+A++ WPG Sbjct: 301 DLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLL 407 NVRQL NVIE+ V + + V+ + L + + F + E +R+ L Sbjct: 361 NVRQLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVRVGMTLAEAEKLLIRQTL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N AA+ G +R L ++ L Sbjct: 421 SQLTSNREEAAQALGISRRTLQYKLKQYGL 450 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 172/447 (38%), Positives = 266/447 (59%), Gaps = 14/447 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +H+++VDD+P LK L L EG+ V + L + D++ISD+RM MDGM Sbjct: 3 SHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGM 62 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L ++ P + VI++T + S+ AV A ++G F +L KP D + + + AL + Sbjct: 63 ELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLS 122 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 R I+ + + ++ + ++ +VLI G SG+GKE+ A+ Sbjct: 123 ARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVAR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH AS R++ PF+A NCGAL E L+++ELFGH +GAFTGA S GL +AA GGTLFLD Sbjct: 183 AIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+MP +QVKLLRVLQE ++ +G +R + ++VRI+SAT D+ A+ G FR+DLY+ Sbjct: 243 EIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYF 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NVV++K+P LAER EDIPLLA H+L + + ++A S AM L ++PGNVR+ Sbjct: 303 RINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRE 362 Query: 356 LVNVIEQCVALTSSPVISDALVEQ---ALEGENTALPT-FVEARNQFELNYLRKLLQITK 411 L N++E+ VA+ +I + + ALE + P + E +Y+ LL+IT Sbjct: 363 LENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTLAELERDYMAHLLKITG 422 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 G + A + G +R ++ + +++L+ Sbjct: 423 GARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 173/452 (38%), Positives = 262/452 (57%), Gaps = 17/452 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ + L LT G+ A G E L L E DLV++DLRM Sbjct: 1 MSR--ARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG++L A +++ P + VI++T H ++ AVAA G F+++ KPV + + A Sbjct: 59 GMDGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKA 118 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE++A + ++ +S M L E VA+ + +VL+ G++GTGK Sbjct: 119 LEKNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH+ S R F+A+NCGA E+L+ +ELFGH R AFTGA + R+GL +AA GG Sbjct: 179 ELVARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P +QVKLLRVLQER +G + ++ R++SAT++DL K G FR Sbjct: 239 TLFLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DL+YRL+V++L +P L+ER EDIPLLA H L + A VR S + + L+ +P Sbjct: 299 QDLFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNVR-LSPEVLDSLLLYEYP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV----EARNQFELNYLRKL 406 GNVR+L N++++ +A+ VI + L + + E Y+R + Sbjct: 358 GNVRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEKAYIRDV 417 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ +GN + AAR+ G +R ++ L R+ L+ Sbjct: 418 LEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 182/454 (40%), Positives = 270/454 (59%), Gaps = 19/454 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + P +L+VD+D L + + L GY A SG EG+R + ++ ++VI+DL M++ Sbjct: 12 AAPPIRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMND 71 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA- 120 +DGM++ A ++ P VI++T H ++P AV A QQG F+FL KP+ L + A Sbjct: 72 VDGMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAA 131 Query: 121 ----LEQSAPATDERW-----REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L Q+ ++R E I+ S M +++++ + +A +D SVLI G+SGTGKE Sbjct: 132 DAVRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKE 191 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + AQAIH SPR SK +A+NC A+ E L+ESELFGH +GA+T A+++R G F+ A GGT Sbjct: 192 LVAQAIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGT 251 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+GDMP Q+KLLRVL+E ++ +G N+ I +NVR++SAT+R L A+ G FR Sbjct: 252 LFLDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRA 311 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VV++++PAL +R EDI LA+H RQ RH + S +RL + WPG Sbjct: 312 DLYYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPG 371 Query: 352 NVRQLVNVIEQCVALTSSPVIS-DALVEQALEGENTALPTFVEA--------RNQFELNY 402 NVRQL N IE V L + ++ D L + ++ E P + E Sbjct: 372 NVRQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWA 431 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 + + L++T GN AAR+ G Y+ L +++ Sbjct: 432 IEETLKLTSGNREEAARILGIGARTLYRKLDKYQ 465 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 170/446 (38%), Positives = 263/446 (58%), Gaps = 19/446 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL++D+ L L+ + LTSE TA +G EGL++L+ ++ D++I+D+RM M G + Sbjct: 2 SILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNE 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + K+ P MPVII+TAHG+IPDAVAA ++G + +LTKP + + L +I A+E S Sbjct: 62 VMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISRM 121 Query: 127 ATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + +V +S +++L A VA +D VL+ G+SGTGKE+ A+ + Sbjct: 122 RRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQV 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S R KPFI +NC A+PE L ESELFGH +G+FT A + +G AEGGTLFLDEI Sbjct: 182 HSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEI 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P +QVKLLR LQE +++P+GS + ++VR+++AT+R L + +GEFR+DL+YRL Sbjct: 242 GELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRL 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV +++P L++R EDI L + R FS AM++L+ SW GN+R+L Sbjct: 302 NVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNIRELE 356 Query: 358 NVIEQCVALTSSPVISDALVEQALEGE-----NTALPTFVEARNQFELNYLRKLLQITKG 412 N I + L I++ + + +P + E N + K L G Sbjct: 357 NTIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALHKFDG 416 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELD 438 N + AA+ R L ++E++ Sbjct: 417 NKSRAAKYLCIPRHVLLYRLEKYEIN 442 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 157/464 (33%), Positives = 259/464 (55%), Gaps = 30/464 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A LL++DD+ + L L E Y V ++G +GL ++ ++K DLV+ D++M++MDGM Sbjct: 2 AKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDGM 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ + P +P I+++ HG++ A+ A+++G F F++KP D + L + +AL++ Sbjct: 62 EVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRGN 121 Query: 126 PATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 T+ + + I+ S + ++ E VA ++ VLI G +G+GKE+ A+ +H Sbjct: 122 LVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWLH 181 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R P I +NC A+P +L+ESELFGH +G+FT AV R G F+ A GGTLFLDEIG Sbjct: 182 EKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEIG 241 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 DM Q K+LR LQE K+ +G +++++NVR+++AT++DL K + G FR DLY+RLN Sbjct: 242 DMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRLN 301 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+++ +P L ERTEDIP +A + L + + V+ S AM L W GNVR+L N Sbjct: 302 VINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELHN 361 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPT-----------------------FVEAR 395 +IE+ + L+ + + ++ A G T + F + + Sbjct: 362 MIERLIILSDKVITENDVIAFANPGGGTNIGAVNTANGQSGLAHGPTVDYDKFNNFQDYK 421 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + E +++ L+ NV+ A R+ Y + + L Sbjct: 422 DHAEREFIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEKFGLKR 465 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 164/456 (35%), Positives = 250/456 (54%), Gaps = 26/456 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLV+D L ++L L GY+V+ + + E L L +++ V++DL++ GM + Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + P +PV+++TA G+I DAV A + G F F+ KP+D L ++ A+E+ Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRLM 123 Query: 128 TDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D I+ P M + + +A SD +VL+ G+SGTGKE+FA+AI Sbjct: 124 RDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAI 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R+++PF+A+NC A+PE L+E+ELFGH +GAFTGA + + G F+ A GT+FLDEI Sbjct: 184 HQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P LQ KLLRVL+E V LGS + ++VR+++AT+R+L +A+ G FR DLYYRL Sbjct: 244 GELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRL 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 V ++IP L ER ED+ L+A H L + K + + DA+ L WPGNVR+L Sbjct: 304 AVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQ 363 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---------------ARNQFELNY 402 N IE+ L + V + A + + + A + E A E Sbjct: 364 NTIERAAILHDTEV-TAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAK 422 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + L+ K N + AA G + + + LD Sbjct: 423 IEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 158/453 (34%), Positives = 254/453 (56%), Gaps = 15/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L++DD+ + GY + A SG GL+++ E++D+VI+DL M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM++ ++ P +I++T +G++ AV A Q+G +FL KP++ + L I+ Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E+ + + I+ S M ++L ++ ++ +VLI G+SGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IHN S R P + +N A+PE +LESELFGH +G+FTGA+ R+G F+ A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T FLDEIGDMP Q KLLRVL++ + +GSN I+++VR+I+AT+++L + G+FR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV+ +K+P L ER EDIPLL + +R+ + + + + +A K L+ WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----TFVEARNQFELNYLRK 405 GN+R+L N IE V +T+ + + +E ++ +P E+ ++ Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAEIELIKC 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L GN AARM G Y+ L + L Sbjct: 421 TLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 151/447 (33%), Positives = 251/447 (56%), Gaps = 19/447 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+P + L L + Y +GL ++ +E +D+V+ DL++ ++DG++ Sbjct: 3 RILIIDDEPSICSSLQFALEDD-YETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDGLE 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + EI++ +P VI++TA+G+I ++V A + G +S+LTKP+ + L+ ++ AL Sbjct: 62 VLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYKKL 121 Query: 127 ----------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + E ++ +S M ++ V D SVLI G+SGTGKE+ A+A Sbjct: 122 NEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH + R + F +NC A+PE LLESELFG+ +GAFTGA + +EG FQ A GT+FLDE Sbjct: 182 IHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP LQ KLLRVLQ+++V LGSN+ ++VR+I+AT++ L + + G FREDLY+R Sbjct: 242 IGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+V+ + +P L ER ED+P L H L + ++ F +DA + L+ +PGN+R+L Sbjct: 302 LHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN--------QFELNYLRKLLQ 408 N++E + + I + + + + + + E +++ L+ Sbjct: 362 SNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKELEKDFILATLK 421 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRH 435 + A M G + L ++ Sbjct: 422 HNDNHRKKTAEMLGISERGLRDKLKQY 448 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 158/452 (34%), Positives = 239/452 (52%), Gaps = 18/452 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+V+D + L LT + +G + + LN DL++ DLR+ +M GM + Sbjct: 13 LLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDV 72 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++K P +PV+ +TAHGSI AV A + G FL KP + D L +++AL +++ Sbjct: 73 LYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKL 132 Query: 128 TDE------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 +E + + + S M + A S S+ I G+SGTGKE+ A+AIH S Sbjct: 133 KNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHATS 192 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R KPFIAINC A+P+ L+ESELFGH +GAFTGA ++R+G + A+GGTLFLDE+ +M Sbjct: 193 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMD 252 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ Sbjct: 253 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIP 312 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 L +P L ER +DI +A LL ++ S + R + WPGNVRQL NV+ Sbjct: 313 LHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLR 372 Query: 362 QCVALTSSPVISDALVEQAL-EGENTALPTFVEARNQF-----------ELNYLRKLLQI 409 V L + I +++ L + + + ++F E + + ++ Sbjct: 373 NVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFPLWLTEKRAIEQAIKA 432 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 GN+ AA + + Y+ L L Sbjct: 433 CDGNIPKAAGYLDVSPSTIYRKLQSWNLKETQ 464 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 168/456 (36%), Positives = 252/456 (55%), Gaps = 19/456 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR--- 58 + +P +L+ DD +L+ L L L +G +VVT++S A L L E VDLV+ DL Sbjct: 19 AARPPCVLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYAR 78 Query: 59 --MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 +G+ L I+ +PV+++TA GS+ AV A + G ++ KP D L Sbjct: 79 DTTSGQEGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLAT 138 Query: 117 IDDALEQSAPATDERWRE--------------AIVTRSPLMLRLLEQARLVAQSDVSVLI 162 + LE R E A+V+ S M + VA S +VL+ Sbjct: 139 LRTQLELRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLV 198 Query: 163 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREG 222 G+ GTGKE+ A+ IH S R+ + F+A+N G L E + ESELFGH +GAFT A S+R G Sbjct: 199 TGEHGTGKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIG 258 Query: 223 LFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPK 282 F+ A+GGTLFLDEIG+MP Q KLLRVLQ ++ P+GS++ ++VR++SAT+ DL + Sbjct: 259 CFELADGGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSR 318 Query: 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMK 342 A+A G FREDL YRLN V +++P L ER EDIPLLA H L + R+ S++A++ Sbjct: 319 AVAEGRFREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALE 378 Query: 343 RLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNY 402 L+ +WPGNVR+L + +E+ + + S ++ + G + E Sbjct: 379 ALLAYAWPGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGREGMARLEEMTLEEVERYL 438 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + L +GNV+ AA+ G +R+ Y+ L + + Sbjct: 439 IERALARHEGNVSEAAKGLGLSRSALYRRLQYYGIK 474 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 161/468 (34%), Positives = 259/468 (55%), Gaps = 37/468 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L + GY V+ A++G+ GLR+ E DLV+ D+R+ +M G++ Sbjct: 5 KILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDMGGLE 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++++ VI++TA + D A + G + F+ KP+D D L A+ +ALE + Sbjct: 65 ILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALETTRL 124 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIFAQ 175 T+ IV S M L+ +A S+ + +L+ G+SGTGK++ A+ Sbjct: 125 RTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAK 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R KPF+AINC A+PE L+E+ELFGH +GAFT A + ++GLF+AA+GGTLFLD Sbjct: 185 AIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ LQ KLLRVL+++ +R +G RD+ ++VR+I+A++RDL K + G FR+DLYY Sbjct: 245 EIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL ++S+ +P L +R EDI L + + + K +R + + + LM WPGNVR+ Sbjct: 305 RLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENT--------------------------ALP 389 L N IE+ + L + + + A+ + +P Sbjct: 365 LKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIP 424 Query: 390 TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + E ++ ++ GN THAAR+ +R L + L Sbjct: 425 EGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 162/440 (36%), Positives = 257/440 (58%), Gaps = 6/440 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L++DD L++L L S G+ V+ +E +R+L + + LVI+D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG + +++ G+ V+ +T +I A+ A + G +L KP + L+ AID A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 L------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L +Q++P+ R + I+ S M+++ E A S +VLI G+SGTGKE+ A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R PF+ +NCG +PE LLESELFG+ +GAFTGA +R G FQ A+ GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI + P+Q+KLLRVLQE ++ LGS++ +N+RI++AT+R L + + +G FREDL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+++ P L +R +DI LL NH ++ +ER+ S + L WPGNVR Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNV 414 +L NVI + +++ SS + + + + + E ++R++L GN Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSAVGEGSLNRTLAEVEAEHVRRVLDSVGGNK 420 Query: 415 THAARMAGRNRTEFYKLLSR 434 T AAR+ G +R L + Sbjct: 421 TLAARILGVDRKTLRAKLRK 440 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 179/447 (40%), Positives = 256/447 (57%), Gaps = 9/447 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDDD +L+++ RL+S + V+ A SG E L +L VDLVI+D+RM M Sbjct: 2 QTKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 GM LF EIQ G+PVI LTA+G+I DAV A + G +LTKP D L + + L Sbjct: 62 GGMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILR 121 Query: 123 QSAPATDER-----WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + P + E +S M L + +A SDV+VLI G+SG GKE A+ I Sbjct: 122 KPVPHLPAQETISPKHEFWGGKSASMRELQDLVERIAPSDVNVLILGESGVGKERVARLI 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H PR PF+ ++CG+ P LLESELFGH RGAFT A+ +++GL +AAE GTLFLDEI Sbjct: 182 HQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLDEI 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +QV+LLR L++RK+R +G R+I +N R+I+AT+ DLP+ + G FREDLYYRL Sbjct: 242 GNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYYRL 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV+L+IP L ER EDIPLLA H L+ E + ++ L WPGNVR+L Sbjct: 302 RVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRELK 361 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP----TFVEARNQFELNYLRKLLQITKGN 413 N +E L V+ + + + P + + E N + + LQ Sbjct: 362 NALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNAIVRALQQAGWV 421 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDAN 440 AA++ G +R + ++ ++++ Sbjct: 422 QKDAAQLLGISRRAINYKIKKYGIESS 448 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 158/446 (35%), Positives = 257/446 (57%), Gaps = 11/446 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +L++DD+ L L + EG++V+ A + +++ +E++D+V+ D+++ + Sbjct: 1 MPGTVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ I++ P + +I+LTA+G+IPD V A + G F +LTK D + + ++ ALE+ Sbjct: 61 GVDYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEK 120 Query: 124 SAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + I+ S + +EQA VA +D +VL+ G++GTGKE+F Sbjct: 121 VQLQKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVF 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 AQAIHN S RN KPF+A+NC A +LLESELFG+ GAFT A +++GL + A GT+F Sbjct: 181 AQAIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+MP LQ KLLRVL+ + +G + +NVRII+AT+RDL + +G FREDL Sbjct: 241 LDEIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV ++ +P L ER +DIP LA + + + + + + +++L W GN+ Sbjct: 301 YYRLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALE-GENTALPTFVEARNQFELNYLRKLLQITKG 412 R+L NV+E+ V + ++ + L+ + + P E ++ ++L TK Sbjct: 361 RELKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFDLASVEKLHIIRVLYHTKN 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELD 438 N T AAR+ Y+ + + L+ Sbjct: 421 NKTEAARLLNIGLATLYRKIEEYGLN 446 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 153/432 (35%), Positives = 246/432 (56%), Gaps = 12/432 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+P + L ++ G+ ++ L +N L+I+D++M +MDG+Q Sbjct: 3 SVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGLQ 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L EI+K PVI++T +G++ DAV A + G ++ KP + L + + Sbjct: 63 LLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLI----- 117 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 ++ IV S M R+LE + +A++D++VL+ G+SG GKE+ A+ IH SPR+++ Sbjct: 118 ----PEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRSNQ 173 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 PF+AINC A+ E LLE+ELFGH +GAFTGA + G F+ A GT+ LDEI +M LQ Sbjct: 174 PFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQA 233 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRV+QE+++ +G + I I+VRII+ T++DL + + +G FREDL+YR+NV ++IP Sbjct: 234 KLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPP 293 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L ER++DI LA L++ + + + D K L+ SW GNVR+L N I + L Sbjct: 294 LRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELENFIYRSAVL 352 Query: 367 TSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRT 426 + ++ L E + P E + L+ T+GN T AA++ G + Sbjct: 353 SQDGIL--RLHEDEINLFEEEKPVKAGKLKDAERELIVDALKKTEGNRTKAAKILGISVR 410 Query: 427 EFYKLLSRHELD 438 ++ + L Sbjct: 411 TLRNKINEYGLK 422 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 164/452 (36%), Positives = 257/452 (56%), Gaps = 18/452 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNR-----EKVDLVISDLRMDE 61 +L+ DDD + + L L LT GY VVTA +G++ + + +DL++ DLR+ Sbjct: 3 TILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTG 62 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG ++ +++ +P +P+I++TA+ + A+ A + G L KPVD D L + ID Sbjct: 63 MDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIF 122 Query: 122 EQSAPAT---------DERWREAI-VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E SA + D + + I V R+ M + + VA S +VLI G+SGTGKE Sbjct: 123 EMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTGKE 182 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S ++PFIA+ C AL +LESELFGH +GAFTGA+ + G F+ A+GGT Sbjct: 183 MVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQGGT 242 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI ++ +QVKLLR +QER+ +G I +VRI++AT+++L +A G FR Sbjct: 243 LFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMFRN 302 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VVS+ +P L ER EDIP+L LL + V + M +++ SWPG Sbjct: 303 DLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSWPG 362 Query: 352 NVRQLVNVIEQCVALTSSPVISDA--LVEQALEGENTALPTFVEARNQFELNYLRKLLQI 409 NVR+L N + + V L+ ++ +E+ +G+ P ++ ++ E +++ +L Sbjct: 363 NVRELENTLRRAVILSHGNMLLPESLHLEEGCDGQER-FPLLLKPLHEVEREHIQNVLCY 421 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + AA + G +R + + + L+ D Sbjct: 422 VRNEKKRAAEILGISRPTLDRRIKEYGLEEED 453 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 175/459 (38%), Positives = 266/459 (57%), Gaps = 25/459 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +L+V+DD +L L +G+SV TA S A + L+ + DLV+SDLR+ + D Sbjct: 1 MPHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L + +++ + +P+II+T + I AV A + G +++KP+ D L + I++AL+ Sbjct: 61 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQN 120 Query: 124 SAPATDERWREAIV-----------------------TRSPLMLRLLEQARLVAQSDVSV 160 A T + V S +L LVA + +SV Sbjct: 121 KALPTPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTPMSV 180 Query: 161 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNR 220 LING SGTGKE A IH S R KPFIAI+CG++P++L SE FGH +G+FTGA++++ Sbjct: 181 LINGASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGALNDK 240 Query: 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDL 280 G F A GGTLFLDEIG++ +Q++LLR LQER++RP+GSN++I+++VR++SAT+ +L Sbjct: 241 TGAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATNENL 300 Query: 281 PKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDA 340 +A+ +G FREDLY+R+N +L++PAL ER EDI L AN L QA + F T A Sbjct: 301 QQAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFDTAA 360 Query: 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEG--ENTALPTFVEARNQF 398 + L T SWPGN+RQL N++++ L S I+ A + L+ + TF Sbjct: 361 SQALQTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYELQEPIRSAGPQTFSLHDEAA 420 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + L+ T N + AA + G +R Y L +++ Sbjct: 421 EKKRILEALKQTGNNKSKAAILLGIDRKTLYNKLKLYDI 459 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 179/470 (38%), Positives = 258/470 (54%), Gaps = 32/470 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K LLL++DD G L L +EGY+V G GL D+VISDL++ Sbjct: 1 MSVKR-TLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG++L + + +P +P+I++TAHG+ A+ AT+ G + +L KP + + L ++ A Sbjct: 60 GLDGLELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKA 119 Query: 121 LEQSAPATDE-------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 +E S ++ R AI+ S LM + ++ VA ++VLI G++GTGKE+ Sbjct: 120 VESSRLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELI 179 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AI+ S R++ PF+A+NC A+PE LLESELFGH RGAFTGA R G F+ A GGTLF Sbjct: 180 ARAIYQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLF 239 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM Q KLLRVLQE+ + LG I I+ R+I+ATHRDL KA+ +FREDL Sbjct: 240 LDEIGDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDL 299 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV +K PAL R+EDIP L +L++ + +A++ L WPGNV Sbjct: 300 YYRLNVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNV 359 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA------------------- 394 R+L NV+ Q + L IS V + + A+ ++ Sbjct: 360 RELENVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEG 419 Query: 395 -----RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + E + +++ +GN AAR G +R + L+ L Sbjct: 420 VHATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLNHFGLHP 469 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 181/472 (38%), Positives = 254/472 (53%), Gaps = 39/472 (8%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +LLVDDD L LG L EG+ A + + + L + +LVI+DLR+ DGM Sbjct: 5 ASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGEDGM 64 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L ++++K PV+++T + + AV A + G LTKPV D L AID A+ Q Sbjct: 65 TLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMNQRK 124 Query: 126 PATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + E I++ M+++ + VA + S+LI G++GTGK + A+ Sbjct: 125 IEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSMIAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIHN R S PFI + CGALP+ LLESELFGH GA+TGA ++R G F+ A+GGTLFLD Sbjct: 185 AIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI +QVKLLRVLQE + PLG ++ R+I AT+ +L +A+A G FR+DLYY Sbjct: 245 EIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NVV++ +P+L ERT DIPLL +H LR+AAE + F +AMK L + +WPGNVRQ Sbjct: 305 RINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGNVRQ 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALP-------------------------- 389 L NV+E+ V L + V++ + + G + Sbjct: 365 LENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFNPAVL 424 Query: 390 ---TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + EA E + L+ N A NRT YK + R LD Sbjct: 425 DGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKRLGLD 476 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 160/444 (36%), Positives = 250/444 (56%), Gaps = 17/444 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +LLVDD+ ++LL RLT +GYSV + + L ++ + D+ + D+ M+ MD Sbjct: 2 RRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L + +K+QP + +I+LT + ++ A+ A ++G + +LTKP+ L + AL++ Sbjct: 62 GLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALDR 121 Query: 124 SAPA----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ S ++ L V+ S + VLI G+SGTGKE+ Sbjct: 122 KKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A A+H S R PF+ IN A+P QLLESELFGH +GAFTGA N++GL + A+ GTLF Sbjct: 182 ANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLR L + RP+G NVR+++AT+ +L +A+ G FREDL Sbjct: 242 LDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+VV+L +P L ER D +LA + LRQ+ + + S +A L+ ++PGNV Sbjct: 302 YYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGNV 356 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 R+L N+IE+ + L+ + + + A E ++ ++L+ T N Sbjct: 357 RELANLIERGILLSKDNDLYPNDFFARETYSKNNMKSL--ALQDIEKEHICQVLEKTGWN 414 Query: 414 VTHAARMAGRNRTEFYKLLSRHEL 437 T AA++ Y+ + ++L Sbjct: 415 KTEAAKILKIGLRTLYRKIEEYKL 438 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 165/451 (36%), Positives = 263/451 (58%), Gaps = 20/451 (4%) Query: 10 LVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFA 69 +VDD+ + +LL + L+ G A + +E + + DL + DLR+ + G+ + Sbjct: 5 VVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDILK 64 Query: 70 EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-----LEQS 124 +I++ P V+I+TA S AV A + G + +++KP + + L I + LE+ Sbjct: 65 QIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLERR 124 Query: 125 APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 +E E + +S + + + + +A D++VLI G+SGTGKE+ A+ IH S R Sbjct: 125 ICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSRK 184 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 +KPF+AINC +LP +LLESELFG+ +GAFTGAVS+++GL + A GGTLFLDEIG+MP PL Sbjct: 185 NKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMPL 244 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLR L+E+ +RPLGS ++I ++VRIISAT+R+L + + +G FREDLYYRL + +K+ Sbjct: 245 QAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIKM 304 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P+L ER EDIPLL +L++ ++ ++ S D MK L++ + GN+R+L N++E+ V Sbjct: 305 PSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKAV 364 Query: 365 ALTSSPV---------------ISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQI 409 L+ I + E ++ E ++ E + K L+ Sbjct: 365 ILSDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSFPEEGVDLKEVLSRIEKALIFKALEK 424 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +G + AA + EF LS++ D+ Sbjct: 425 AEGKKSKAADILRLTFREFRYRLSKYREDSE 455 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 171/445 (38%), Positives = 250/445 (56%), Gaps = 12/445 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A++L+V+DD G +LL L +G+ V A G EGLR + +E+ DLV+SDL+M Sbjct: 1 MSANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDALE 122 G++LF E ++ I +TA G + +AVAA ++G F FLTKP+ D +L ++ ALE Sbjct: 61 GLELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALE 120 Query: 123 Q----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + ++ M + + VA S +VLI+G+SGTGKE+ Sbjct: 121 SVERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH S R FI +NC A+PE LLESELFGH +GAFTGA+ R G F+ AEGGT+ Sbjct: 181 VARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTI 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+MPA LQ KLLRVLQER +G + I NVR+I+AT+RDL + +A FR+D Sbjct: 241 FLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDD 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNV + +P L R + + LA + + A + ++ + +A++ + WPGN Sbjct: 301 LFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKG 412 +R+L NVIE+ V L ++ + + G+ T V E N + + L+ +G Sbjct: 361 IRELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVGILKDIERNCILEALKNNRG 419 Query: 413 NVTHAARMAGRNRTEFYKLLSRHEL 437 N AA G ++ L L Sbjct: 420 NRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 160/442 (36%), Positives = 251/442 (56%), Gaps = 7/442 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +L VDD L++L L S+GY V+T E L +L ++D+VI+D RM Sbjct: 1 MSEK-IRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L +++ + ++++T + SI AV A + G +L KP + L A+D Sbjct: 60 QATGLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRI 119 Query: 121 LEQSAPATDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 +E+ + E IV SP M + + A ++ +VLI+G SGTGKE+ A Sbjct: 120 VERVHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H S R + PF+ +NC A+P+ L+ESELFGH +GAFTGA R G F+ A GGT+FL Sbjct: 180 RAVHYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD +Q KLLR+LQ ++ +GS+ ++ RI++ATH+DL + + G FREDLY Sbjct: 240 DEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLY 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL+VV + +P+LAER +DI +L ++ L + ++ + + + +A+ L SWPGNVR Sbjct: 300 YRLHVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVR 359 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNV 414 +L N+I++ V + I + + + + E +++ +L +T N Sbjct: 360 ELENLIQRMVVIVDHDPIEVTDLPPNMRFSLPMEERVDRSLAEVEQEHIKNVLIMTDNNK 419 Query: 415 THAARMAGRNRTEFYKLLSRHE 436 T AA + G NR + L R E Sbjct: 420 TRAAEILGINRKTLREKLKRME 441 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 585 bits (1510), Expect = e-166, Method: Composition-based stats. Identities = 184/465 (39%), Positives = 257/465 (55%), Gaps = 29/465 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLT-SEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+V+D L L S V TAE GA GL +L + LVI+DLRM + GM Sbjct: 9 RVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGM 68 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L IQ + + VI+ T +G+I DAV A + GV+ FLTKP D L + AL A Sbjct: 69 KLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRA 128 Query: 126 PA----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + +++RSP M+ L E VA + +VLI G++GTGKE A+ Sbjct: 129 LQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIAR 188 Query: 176 AIHNASPR-NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 AIH AS + F+A+NCGAL E LLESELFGH +G++TGA R G F+ A GTLFL Sbjct: 189 AIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFL 248 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+P +QVKLLRVLQER+ +G I+I+VR+++ATH+D+ K + G+FREDLY Sbjct: 249 DEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLY 308 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV + IP L ERTEDIP+L +H ++ R S +A+ L WPGNVR Sbjct: 309 YRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-VRVGQKPPTISPEALDLLTKCPWPGNVR 367 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTA----------------LPTFVEARNQF 398 QL N IE+ VI + + + E F Sbjct: 368 QLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAF 427 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 E Y+R+ L+ ++G+V A++ G +R ++++++D FK Sbjct: 428 EERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKIDKEQFK 472 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 166/460 (36%), Positives = 263/460 (57%), Gaps = 26/460 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+P + + L+ +GY V SG EGL+ L DLV+ D++ ++G+ Sbjct: 4 SRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHINGI 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + E++K +P + VII+T +G++ +AV A + G F F+TKP ++ L ++ ALE Sbjct: 64 DILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALESIK 123 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ + + ++ E+ V+ D +VL++G+SGTGKE+FA+ Sbjct: 124 LVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAK 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R S F+A++C ++ESELFGH +GAFTGA + EG+F AA GTLFLD Sbjct: 184 AIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+G++ +Q KLLRVL+ + +P+GSN+ R+++AT+++L + + G FREDL+Y Sbjct: 244 EVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV +KIP L ER +D+P +A H LR + + FS DA+ L+ WPGNVRQ Sbjct: 304 RLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGNVRQ 363 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQF--------E 399 L NV+E+ V + + + LE + A L AR F E Sbjct: 364 LKNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPLTLEELKRARKDFLEDSFRPVE 423 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 +L + L KGN+T AA+ G R+ F ++ ++++ A Sbjct: 424 RLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKKNDIHA 463 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 160/467 (34%), Positives = 259/467 (55%), Gaps = 34/467 (7%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++ ++DD+ + + L ++V + S +E L LN DL+I+D++M M Sbjct: 2 KMNNVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ ++ + P +P II+TAH +I +A++A + G F +LTKP D + + + A + Sbjct: 61 GLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATKS 120 Query: 124 SAPATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 S P DE +E+ IV ++ M + + ++++D++VLI G+SGTGKE+ AQ++H Sbjct: 121 SKPQHDELTQESNSQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQSVHEN 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R+++PFIAIN A+P +LLESELFGH +G+FTGA S R G F+ A GGTLFLDEIGDM Sbjct: 181 SSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDEIGDM 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 LQ +LLRVL + +G + I +VRII+AT++++ + G+FREDLY+RLNV Sbjct: 241 HPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHRLNVF 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +++P L +R EDIP L + L+++A+ K ++ AM+ L WPGN+RQL N Sbjct: 301 RIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQLENTC 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPT------------FVEAR------------- 395 + S I+ + ++ + +L + E+ Sbjct: 361 RYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMND 420 Query: 396 -----NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E L++ L+ +KG AA++ G R + + L Sbjct: 421 LTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIKDLGL 467 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 169/447 (37%), Positives = 250/447 (55%), Gaps = 15/447 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD-EMDGM 65 HLL+VDD+P + L L + TA S E L + LVI+D++M + DG+ Sbjct: 39 HLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDRDGL 98 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + I++ PG I++TA+G++ AV A ++G F F+ KPVD + + Q + A E Sbjct: 99 ELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAEHHQ 158 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + L+++ R VA +D +VL+ G+SGTGKE+ A+ Sbjct: 159 LRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKELIAR 218 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H+ S RN+ PF+A+N GALPE LLESELFGH +G+FTGA + G F+ A GGTLFLD Sbjct: 219 AVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGTLFLD 278 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI ++PA QV LLRVL+ + +G + N RI+SAT++ K + G FREDLYY Sbjct: 279 EITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFREDLYY 338 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLN++ +++P L R EDIPLL H L++ RH+ ++ +AM+ L + WPGNVRQ Sbjct: 339 RLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPGNVRQ 398 Query: 356 LVNVIEQCVALTSSPVISDALVEQALE----GENTALPTFVEARNQFELNYLRKLLQITK 411 L N IE+ V + I A + L ++TAL T VE E + L K Sbjct: 399 LRNHIERLVVTVPAETILAADLPCELHQQNAAQSTALKTLVEITESAEKTGIELALSAKK 458 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 + A+ G + + ++R+ L Sbjct: 459 SHREQTAKALGISVRTLHYKMNRYNLH 485 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 183/447 (40%), Positives = 254/447 (56%), Gaps = 9/447 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +L+V+D+ L +L L +EG+S ES + L ++ RE LV++D R+ M Sbjct: 2 RSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMS 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G +L A I++ P PV+I TA+G I AV A + G +LTKPVD+ L I AL Sbjct: 62 GTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSC 121 Query: 124 SA----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 P + + R I+ SP L +LE LVA + +VLI G+SGTGKE+ A+ +H Sbjct: 122 RGHTNPPRSQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLHV 181 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 ASPR PF+A NCGA+P L+ESE+FGH +GAFTGAV ++ G + A GTLFLDE+GD Sbjct: 182 ASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEVGD 241 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MP +QVKLLR LQER+ LG N+ + + RII+ATH DL KA+ G FREDLYYRLNV Sbjct: 242 MPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRLNV 301 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L IP L ER ED+ L +H LR+ +T A+ + SWPGN+RQL N+ Sbjct: 302 IPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQLENI 361 Query: 360 IEQCVALTSSPVISDALVEQALE-GENTALPTFVEA--RNQFELNYLRKLLQITKGNVTH 416 +E+ V L I A + + E + F A + E + L + N + Sbjct: 362 VERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYDLHAVEREAVVSALNKAQSNKSQ 421 Query: 417 AARMAGRNRTEFYKLLSRHEL--DAND 441 AA + G +R + + + L D D Sbjct: 422 AALLLGISRKQLHTRMKNLGLIVDRED 448 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 246/482 (51%), Gaps = 44/482 (9%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A LL++DDD +L +L E Y ++ L+ + ++ ++ I D+ + + Sbjct: 1 MTAKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G+++ E +K+ PG+ VI+ T + + +A+ A + G F ++TKP D L A+ ALE Sbjct: 61 GIEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALEC 120 Query: 123 -----------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + ++ + ++ SP M+ + + VA SD +VLI G+SGTGKE Sbjct: 121 NLLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A++N S R ++PF+A+NC ALPE LLESELFGH +GAFT A S R G F+ GGT Sbjct: 181 LLARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIG+M Q K LRVL+ ++ +G N I ++VR+I+AT++ L + FR Sbjct: 241 IFLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRM 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VV+ +P L +R EDIPLL +++ ++++ ++A + + + L + W G Sbjct: 301 DLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ-------------- 397 N+R+L NVI ++ E L + +EA Sbjct: 361 NIRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVF 420 Query: 398 ------------------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 E + ++ + N AA++ G +R L R+ + A Sbjct: 421 DGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERYRIGA 480 Query: 440 ND 441 D Sbjct: 481 AD 482 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 184/443 (41%), Positives = 267/443 (60%), Gaps = 12/443 (2%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+VDD+P LK+L L EGYSV A AE + L++E +D VI+D++M DG+ Sbjct: 7 GKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGI 66 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 QL + + P +P+I LTA+GS+ AV A +G F + KP D L + A+EQ + Sbjct: 67 QLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRS 126 Query: 126 PATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + IV +P MLR+ E V S SVLI G++GTGKE+ A++ Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R KPF+A+NC A+P +L+ESELFG+ +GAF+GA S R G F+ A GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ PLQ KLLRVLQE+++ LGSN+ I +N R+IS+T+R++P + G FREDL+YR Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV +++P L +R EDIPLLA L+R+ R V F + M+ + WPGN+RQL Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNIRQL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEAR--NQFELNYLRKLLQITKGNV 414 N+IE+ V L I+ + + L+ + + + R + E + L+ + GN Sbjct: 366 GNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAAILAALEESGGNK 425 Query: 415 THAARMAGRNRTEFYKLLSRHEL 437 +HAA+M G +R YK L E+ Sbjct: 426 SHAAKMLGISRKALYKRLGEMEV 448 >UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C4ZIM7_THASP Length = 451 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 165/444 (37%), Positives = 238/444 (53%), Gaps = 4/444 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S + L++DD + + L R EG+ V +GAE L + +V+SD+R+ + Sbjct: 6 STPQPRICLIEDDEIIGESLSDRFRLEGFDVDWCRTGAEARDALATRRHAVVVSDIRLPD 65 Query: 62 MDGMQLFAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +G LF E+ P +P + +TA G+I AVA + G ++TKP D DAL + Sbjct: 66 CNGGDLFIELLAEAPALPPFLFMTAFGAIERAVALIKAGAADYITKPFDPDALVAKVCAL 125 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E+ A R+ + SP M R+ E +A+ S+LI G+SG GKE A+ H Sbjct: 126 AERYGVARTASGRDERLGVSPAMGRIAENMPRLARHTESLLITGESGVGKEHVARLFHYH 185 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 + PF+A+NC A+PE L+ESELFG+ +GAFTGA R G F+ A+GGTLFLDEIGDM Sbjct: 186 AAGGEAPFVAVNCAAIPESLIESELFGYEKGAFTGAAKARRGYFEQAQGGTLFLDEIGDM 245 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +Q KLLRVLQE +++ LG I ++ R++ ATH DL + G FREDLYYR+NV+ Sbjct: 246 PLSMQAKLLRVLQEHRLQRLGGETTIAVDFRLVCATHCDLKAMVEEGRFREDLYYRINVI 305 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 L+IP L ER EDI H + H R + L W GNVR+L + + Sbjct: 306 HLRIPPLRERKEDIVWFMQHFVEAFNRAHPEEARRIDPRTQEALARYPWSGNVRELKHAV 365 Query: 361 EQCVALTSSPVISDALV---EQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 E+ L+ PV+ +Q + E + E +YLR +L+ G++TH+ Sbjct: 366 ERACILSPGPVLGADAFFGEDQDVGAEAPTSRPLADYLMDCERDYLRMVLEQHGGHMTHS 425 Query: 418 ARMAGRNRTEFYKLLSRHELDAND 441 A G R ++ + R L A D Sbjct: 426 AEALGITRKTLWEKMRRLGLQARD 449 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 158/454 (34%), Positives = 255/454 (56%), Gaps = 18/454 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDDD L +L + L G+ +TAE+ + L + VDLV+ D+R+ + +G+ Sbjct: 2 ATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENGV 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L +++ +PVI++TA+ AV A + G ++ KP D L ++ +L+ S Sbjct: 62 DLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTSR 121 Query: 126 PATDERWRE--------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + RW + I+ SP M + VA + +++L+ G+SGTGKE+ A+AI Sbjct: 122 LQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARAI 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR P + INCG LPE L+ESELFG+ RGAFTGA ++GL + A+ GT FLDE+ Sbjct: 182 HAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDEV 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ QVKLLR +Q++ PLG +I +VRII+AT+R + + +A+G FR+DLYYRL Sbjct: 242 AELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYRL 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 + + + +P L +R D+ LLA H L +A K + S +A ++L +PGNVR+L Sbjct: 302 SGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVRELE 361 Query: 358 NVIEQCVALTSSPVISDALV---EQALEGENTAL-------PTFVEARNQFELNYLRKLL 407 N+IE+ VAL I+ + + EQ + + + + + E L+ + Sbjct: 362 NIIERAVALEQGNTITPSSLIIYEQDAAADPSGVNRVLGGELSLEDHLQSEEHKILKAAM 421 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 T G+ + AA++ G N +F ++ ++ D Sbjct: 422 DATGGHKSQAAQLVGLNFRQFRYRWDKYASESQD 455 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 156/443 (35%), Positives = 247/443 (55%), Gaps = 17/443 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 P ++L+VDD+ + +LL L S + TA +G E L + + D+++ D+ + + +G Sbjct: 10 PINILVVDDEKSIRRLLEKELASARRCITTAGNGREALIAIRKNVFDVIVLDISLPDANG 69 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA---- 120 ++L + + G+ +I++T +G + DAV A + G ++TKP D L Q I+ A Sbjct: 70 IELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAYQIG 129 Query: 121 -------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 L+Q + + + IV S M + VA + V VL+ G+SGTGK + Sbjct: 130 SLHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLVTGESGTGKNVV 189 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ +H S R P I NC L E+L+ SELFG+ +GAFTGA +R+GL A+ GTLF Sbjct: 190 ARQLHGLSLRGEYPLITKNCATLQEELIRSELFGYCKGAFTGAEDSRDGLLDLADKGTLF 249 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +Q LLRV++ + RP+G + +++R + AT+RDL + +A+G F E L Sbjct: 250 LDEIGELSVGVQASLLRVMENQTFRPVGDKHERKVDIRFVFATNRDLKEEVAKGRFSEAL 309 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 ++RLNV ++KI L +R E+IP+L + L Q + S +AMKRLM WPGNV Sbjct: 310 FHRLNVFAIKILPLRKRKEEIPVLMEYFLGQIST--GSPPCMVSKNAMKRLMAYDWPGNV 367 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQAL----EGENTALPTFVEARNQFELNYLRKLLQI 409 R+L NV+E+ V L + +I++ + L EG T + + NY+ K+L Sbjct: 368 RELYNVMERGVILADNNIITERCLPLELLETTEGTEDKNSTLFPTLEELDKNYIMKVLDH 427 Query: 410 TKGNVTHAARMAGRNRTEFYKLL 432 GN + AA + G +R Y+ L Sbjct: 428 VDGNRSKAAEILGISRKTLYRKL 450 >UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Aquificales RepID=B2V7B6_SULSY Length = 466 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 160/465 (34%), Positives = 266/465 (57%), Gaps = 24/465 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + ++L+VDD+ LL L EGY V + V+ DL+ISDL+M + Sbjct: 2 EKGYILIVDDEEDLLVSFKEILEEEGYRVDIESDPLNAVEVVKTNDYDLIISDLKMPNLA 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP--VDKDALYQAIDDAL 121 G + EI+K + IILTA+G++ AV + G + ++ KP + + +++ I++A+ Sbjct: 62 GNEFLKEIRKYNNFISFIILTAYGTVDTAVECMKNGAYDYIAKPVDFNDEKIWKLIENAV 121 Query: 122 EQSAPATDERW-------------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 +++ + + + I+T +PLM +++ + +A D ++LI G+SG Sbjct: 122 KKTKAIKESEYYKSQLNVIKSRDKFKNIITINPLMQEVIDYSIKIANFDFTILIYGESGV 181 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+FA+AIH AS R + F+ +NC + + ++ESE FG +G +TGA ++R G+ + A+ Sbjct: 182 GKELFAKAIHEASQRRNNVFLPVNCATISKDVMESEFFGAKKGVYTGAENDRPGILELAD 241 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGT+FLDEI ++P LQ K LR LQ+++VR +G ++VR+I+AT++DL + + +G+ Sbjct: 242 GGTIFLDEISELPLDLQAKFLRFLQDKEVRRIGDVSAKKVDVRVIAATNKDLKELVNQGK 301 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRL + ++IP L ER EDIP+LA + L + +++ V+ FS DA++ L+ S Sbjct: 302 FREDLYYRLEGIKIEIPPLRERKEDIPVLAYYFLEEFNKKYNADVKGFSKDALEALINYS 361 Query: 349 WPGNVRQLVNVIEQCVA--LTSSPVISDALVEQALEGENTALPTFVEA-------RNQFE 399 WPGNVRQL NV+ + I + + + G + F Sbjct: 362 WPGNVRQLQNVVNEACIIAFAKGQFIELNHLPKEITGIEDKHAMIFDYNLAKKMNDTNFT 421 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 YLR LL TKGN++ AA++A R KLL ++ +D +F++ Sbjct: 422 TKYLRNLLSFTKGNISQAAKLANIERQSLQKLLKKYNVDPQEFRK 466 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 154/456 (33%), Positives = 255/456 (55%), Gaps = 27/456 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 ++++DD+ + L L GY TA EGL+ + K V D+R+ + +G+Q Sbjct: 4 KIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGNGLQ 63 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I+++ + V+++TA+G I AV A + G F ++ KP + D + + ++ Sbjct: 64 LIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDKLKL 123 Query: 127 --------ATDERWREAIVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKEIFAQAI 177 E I+ M + + +++++ DV+VLI G++GTGKE+ A AI Sbjct: 124 QKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVASAI 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ SPR + INCGA+P QL+ESELFG+ + AFTGA + ++GL + A+GGT+FLDEI Sbjct: 184 HHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFLDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q KLLR L+ERK + +G DI++N+R+I+AT++DL +A+ + EFREDLYYRL Sbjct: 244 GELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLYYRL 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + +P L +R EDI LLA H L Q ++ + F+ +A ++L+ W GN+R+L Sbjct: 304 NVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIRELK 363 Query: 358 NVIEQCVALTSSPVISDALVEQALEGEN---------------TALP---TFVEARNQFE 399 NV+E+ + L I + + G +P + + E Sbjct: 364 NVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQPMIKIGEDIPKDFSLENYLQEIE 423 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 +Y++ L++ KGN + AA + G +R + ++ Sbjct: 424 KSYIQTALRLCKGNHSKAAYILGISRFALKRKQEKY 459 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 172/476 (36%), Positives = 256/476 (53%), Gaps = 42/476 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL+VDDDP +L+ + L L + Y VVTA + A+GL + D V+ D+++ + G+ Sbjct: 6 TLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLA 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L E +++ +PVI++T HG+ A+ A G F ++TKP + D + ID ALE S Sbjct: 66 LIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRM 125 Query: 127 ATDERWR----------------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 A + I+ P M+ + VA D +VLI G++GTGK Sbjct: 126 ARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGK 185 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AI+ S R+ + F AINC A+PE LLESELFGH RG+FTGA R G F+ GG Sbjct: 186 EVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGG 245 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIGDM +Q KLLRVLQE++ +G ++ I +VRI++AT+RDL AMA G FR Sbjct: 246 TLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFR 305 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL+YRLN ++++P L ER ED+ +A H A++ + + + M+RLM SWP Sbjct: 306 SDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWP 365 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQAL-----EGENTALPTFVEAR---------- 395 GNVR+L +++Q + S PVI A + G N + E+ Sbjct: 366 GNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEISNGWESEVSKEINRRLA 425 Query: 396 -----------NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N+ + +R++++ T N++ A+ G +R + L Sbjct: 426 SGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMKHLRLKPE 481 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 166/445 (37%), Positives = 243/445 (54%), Gaps = 19/445 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L DD+ L +L+ L L G+ V G + L D +I DL M M+G+Q Sbjct: 15 KILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMNGIQ 74 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP---VDKDALYQAID----- 118 + + +++ P ++LT S A+AA + G F +LTKP VD AL + Sbjct: 75 VIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAKREW 134 Query: 119 ----DALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 AL+ + + +V S M ++ + + VA + +VL+ G++GTGKE+ A Sbjct: 135 VNKCRALKHQLERLE--GKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELVA 192 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H S R KPF+A+NCGALPE L+ESELFGH +G+FTGA +R GLF+ A GGT+FL Sbjct: 193 RAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIFL 252 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++P +Q KLLRVL+ ++R +G N ++VR++ ATHR+LP+ + G+FREDL Sbjct: 253 DEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDLM 312 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YR+N L IP L ER +DI LA+HLLR+ K F+ +A++ L WPGNVR Sbjct: 313 YRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNVR 372 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-----ARNQFELNYLRKLLQI 409 +L NVIE L I+ + Q L G T + E+ + + L Sbjct: 373 ELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALDR 432 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSR 434 GN AA G + Y L++ Sbjct: 433 HNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 186/453 (41%), Positives = 253/453 (55%), Gaps = 25/453 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 + + +L+VDD+ L +L L G+ + A +G E L +L ++ VDLVISDL M M Sbjct: 9 NPESRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGM 68 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G++ ++ PG+P I TA GSI AV+A +QG F +L KP+D I ALE Sbjct: 69 GGIEFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALE 128 Query: 123 QSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKE 171 + + + + IVT+SP M +LE A VA S +V + G+SGTGKE Sbjct: 129 FARLSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKE 188 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH AS F+A+NC A+PE LLESELFGH RGAFTGA +REG F A GGT Sbjct: 189 VLARAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGT 248 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 + LDEIGDMP PLQ KLLRVL+ER +G NR ++ R+I AT+RDL + + +G FRE Sbjct: 249 VLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFRE 308 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+R+NVV + IP L ER EDIPLL + L+ + + S AM L+ SWPG Sbjct: 309 DLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPG 368 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENT--------------ALPTFVEARNQ 397 NVR+L NV+E + S +I + + + +LP + + Sbjct: 369 NVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLDA 428 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 L LQ GN + AA + NR FY+ Sbjct: 429 VVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 161/441 (36%), Positives = 243/441 (55%), Gaps = 15/441 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S +L+VDD+ G+ L L G+ V TAES EG L + DLVI D+ + Sbjct: 9 SAPQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPG 68 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 G++ ++ VI++TA + A+ A + G F+ KP D + +I + Sbjct: 69 KAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRST 128 Query: 122 EQSAPATDERW-----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E++ A + + ++ SP + +L + +A + +VLI G+SG GK Sbjct: 129 ERARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGK 188 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H SPR +PF+A+NC A+ +L+ESELFGH +GAFTGA R GLF A GG Sbjct: 189 EVVARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGG 248 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ +LLRVL+ERKVRP+G+ +++ ++VR+++AT+RDL +A FR Sbjct: 249 TLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFR 308 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRL V++L +P L ER ED+P LA ++Q A + S + RLM WP Sbjct: 309 EDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWP 368 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L N +E+ + P+ S A + A + E ++ +L Sbjct: 369 GNVRELRNFVERSLLFGDFPLASLAGAVAPPPPASAA----PLLLEEVEKRHILAVLDQC 424 Query: 411 KGNVTHAARMAGRNRTEFYKL 431 GN T AA + G +R + Sbjct: 425 GGNKTRAAELLGVSRKTLERK 445 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 174/453 (38%), Positives = 263/453 (58%), Gaps = 20/453 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDDDP ++L L + V A LR L D++++DLRM +DG+ Sbjct: 2 ARILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGI 60 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 +L + +++ P + V ++T H SI AV AT++G +L+KP + D + ++ A+E+ Sbjct: 61 ELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRR 120 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 R +E ++ P M L E AR A++D +VL+ G++G GKEI A+ Sbjct: 121 LLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H SPR + F++INCGALPE LLESELFGH RGAFTGA++ R G F+AA+GGT+ LD Sbjct: 181 LVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG QV+LLRVLQER V+ +G I ++VR+I+AT+ DL +A G FR+DLYY Sbjct: 241 EIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV+L +P L ER ED+ LA H LR+ P VR S + + +L+ +PGNVR+ Sbjct: 301 RLGVVTLVVPPLRERREDVGPLAEHFLRKY-RHVNPAVRGVSPEGLAKLVAYDYPGNVRE 359 Query: 356 LVNVIEQCVALTSSPVISD--------ALVEQALEGENTALPTFVEARNQFELNYLRKLL 407 L NV+E+ + L + +S A + + A A + E ++R++L Sbjct: 360 LENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAIDDAEREHIRRVL 419 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + G AAR+ G +++ ++ L R+ L + Sbjct: 420 ERCGGRRGEAARLLGIDKSTLWRKLKRYGLGGD 452 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 582 bits (1501), Expect = e-165, Method: Composition-based stats. Identities = 167/443 (37%), Positives = 244/443 (55%), Gaps = 16/443 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LLL +DD + + L GY V GA+ L + RE DLV++D+R+ +DG+ Sbjct: 2 KLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLT 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 LF ++ QP V+++TA+ DAV+ ++G ++ KP + D L + ++ A Sbjct: 62 LFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAF 121 Query: 127 ATDERW-------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + ++ S M R+ ++ A SDV VL+ G++GTGK++ A+ IH Sbjct: 122 RKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R +PF+ +NC A+PE L ESELFGH +GAFTGA R G F+AA+GGTLFLDE+G+ Sbjct: 182 RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGE 241 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 + A Q KLLR L+ P+GSNR + ++VR+I+AT+RDL A+ARG FR+DLYYRLNV Sbjct: 242 LAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNV 301 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L P L ER D+P+L L + A R V + L +PGNVR+L + Sbjct: 302 IDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHA 361 Query: 360 IEQCVALTSSPVISDALVEQALEG---------ENTALPTFVEARNQFELNYLRKLLQIT 410 +E+ VAL I + L G L EA QFE Y+R+ L+ T Sbjct: 362 LERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEKT 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLS 433 G+ AA + G +R ++ L Sbjct: 422 GGHRARAAALLGISRKSLWERLR 444 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 171/451 (37%), Positives = 265/451 (58%), Gaps = 14/451 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +L+VDD+ ++ L L EGY V A SG + +L + DLV++DLRM +D Sbjct: 2 KGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGLD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + E +++ P V+++T H ++ AV A + G +LTKP + + +A+++ Sbjct: 62 GLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMDK 121 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ SP + L++ R +A +D +VLI G++GTGKE+ Sbjct: 122 RRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH A + + F+A+NCGA E+LL SELFGH +GAF+GA+S ++GLF+ A GTLF Sbjct: 182 ARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+M +QV+LLRVLQER +G +++I + RI++AT+RDL + RG FR DL Sbjct: 242 LDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRADL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV++L++P L+ R +DIPLLA + A V FS +A++RLM +PGN+ Sbjct: 302 YYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGNI 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTAL----PTFVEARNQFELNYLRKLLQI 409 R+L N++++ V + VI + Q L G+ AL + A + E ++R +L Sbjct: 362 RELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELERRHIRDILTY 421 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 GN T AA + G +R ++ + R L Sbjct: 422 CDGNKTRAAEILGIDRVSLWRKVKRLGLAVE 452 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 170/487 (34%), Positives = 258/487 (52%), Gaps = 55/487 (11%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+P + + L+ EGY+V A +G +G+ + D++I D + +++G+ Sbjct: 2 STILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNGI 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++++ + VI+LTA+ S+P A+ A + G ++ KP D DA + E++ Sbjct: 62 EVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKAH 121 Query: 126 PATDERWR-----------EAIVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKEIF 173 R+ E ++ S M ++ + VAQ+ D +VLI G+SG GKE Sbjct: 122 LTNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEHI 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ IH S R +KPF+ +NC A+PE LLESELFGH GAFT A S + GLF+ A+GGT+F Sbjct: 182 AKLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDMP Q K+L+VL+ ++ R +G RDI +VR+++AT++DL + RG FREDL Sbjct: 242 LDEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL VV + IP L ER EDI LAN L + + S DA L++ +W GNV Sbjct: 302 YYRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLE-LSGDAASALLSYTWKGNV 360 Query: 354 RQLVNVIEQCVALTS-SPVISDALV--------EQALEGENTALP--------------- 389 R+L NVIE+ V +T I + E A + E +P Sbjct: 361 RELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQA 420 Query: 390 ------------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKL 431 + Q E YL L+ T GN AA++ G R Sbjct: 421 EQRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRYQ 480 Query: 432 LSRHELD 438 + ++E+D Sbjct: 481 MKKYEID 487 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 158/445 (35%), Positives = 256/445 (57%), Gaps = 13/445 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ L LL + EG+ V+ A GL+ L++ +D+V+ D+++ + G++ Sbjct: 61 KILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVE 120 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ P +I+LTA+G+IPD V A + G F ++TK D + + A E++A Sbjct: 121 LAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAAL 180 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A + E I+ +S + + +E A+ VA +D ++L+ G++GTGKE+FAQA Sbjct: 181 ARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQA 240 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R ++ F+AINC A LLESE+FGH GAFTGA +R+GLF+ A GT+FLDE Sbjct: 241 IHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDE 300 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G+M LQ KLLRV++ + +G + +NVRII+AT+RDL +A G FREDL+YR Sbjct: 301 LGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYR 360 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V + +PAL +RTEDI +LA H + + + + + L +W GN+R+L Sbjct: 361 ISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIREL 420 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGN 413 NVIE+ V L+S ++ + ++ + + E +++K+L T+GN Sbjct: 421 KNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFSLQSVEKLHIQKVLNHTQGN 480 Query: 414 VTHAARMAGRNRTEFYKLLSRHELD 438 AAR+ Y+ + + L Sbjct: 481 KAEAARLLEIGIATLYRKIEEYRLS 505 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 163/468 (34%), Positives = 251/468 (53%), Gaps = 34/468 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS H+LL++DD ++L L S GY+V +A EG+ + + DL+++D+ + Sbjct: 1 MSE---HILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G++ ++++ PG +I++TA+ + A+ A + G + F +KP L + A Sbjct: 58 GMSGVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRA 117 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + + + I+ S M + VA D +VLI G+SGTGK Sbjct: 118 LEKRRLQKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGK 177 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ + + S R PF+ +NC A+PE L E+ELFGH +GAFTGA S + G F+ A GG Sbjct: 178 ELVSDTLRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGG 237 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDEIGDMPA +Q KLLR ++E+++ LG R + +NVRII+AT+++L + +AR FR Sbjct: 238 TLLLDEIGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFR 297 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL V + +P L +R EDIP LA H+LR+ V + A++ LM WP Sbjct: 298 EDLYYRLGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------------------T 390 GNVRQL N++E+ I+ + AL +N P Sbjct: 358 GNVRQLANLLERAAISAQGR-ITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMP 416 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E +Q E N L + L+ +G+ +AA + G + L +H++ Sbjct: 417 LRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQKHQIR 464 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 156/451 (34%), Positives = 244/451 (54%), Gaps = 13/451 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K +L+VDD+ + +L L L Y V A +G E L L +E D+V+ D+ M Sbjct: 1 MGDKVKKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG E++ VI+++A+G++ AV ++G F +++KP D + + A Sbjct: 61 TLDGPGFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKA 120 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ + +V M + + AQ + VL+ G++GTGK Sbjct: 121 EERLRLREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H R KPFIAINCG + +++SELFGH RGAFTGA +GLF AAEGG Sbjct: 181 ELVARALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ +LLR LQE++VRP+G+ +VRI++AT R+L + + G FR Sbjct: 241 TLFLDEIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL++RL V+ + +P L ER DI LLA H L + A R + + +A++ L +WP Sbjct: 301 SDLFFRLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---TFVEARNQFELNYLRKLL 407 GNVR+L N +E+ I + + + +A ++ E Y+R+ L Sbjct: 361 GNVRELANFMEKTAIFCRDDKICMEHLPWEIRRHPRDRGQDMSLKKAVSRIEPEYIRRAL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +T GN T AA++ + + + ++L+ Sbjct: 421 SVTGGNRTKAAQLLDISLRNLHYKIREYDLE 451 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 165/449 (36%), Positives = 250/449 (55%), Gaps = 19/449 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 L+VDD + KL + G+ AES L L + D++++DLRM E+ G+ Sbjct: 8 RFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSGID 67 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 A ++K+ P V I+T +GSI AV + + G + ++TKP + L + E+ Sbjct: 68 FLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKVRL 127 Query: 127 ATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + IV S + +L + + VLI G+SGTGKE+ A+A Sbjct: 128 VAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVARA 187 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H +PF+A++CG+L L+ESELFGH +GAFTGA+ +EGLFQAA GGT+FLDE Sbjct: 188 MHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANGGTIFLDE 247 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P LQ KLLRVLQ+++VRP+GSN+ + ++VR+I+AT+RDL G FR+DLY+R Sbjct: 248 IGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTFRKDLYFR 307 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV++ +P+L ER DIP L H + + + ++ AMK LM WPGNVR+L Sbjct: 308 LNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDWPGNVREL 365 Query: 357 VNVIEQCVALTSSPVISDALVEQALE--GENTALPTFVEA-----RNQFELNYLRKLLQI 409 N IE+ VAL + VI + +L+ P E E ++++ Sbjct: 366 ENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTTIQRVFDQ 425 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 G+ A +M G +R Y+ + R+ +D Sbjct: 426 VGGDKGLALKMLGISRATLYRKIKRYNID 454 >UniRef50_D2L101 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L101_9DELT Length = 466 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 196/467 (41%), Positives = 280/467 (59%), Gaps = 25/467 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRL--TSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 M+ P +L+VDD P K L L G S+ SG L L R ++++DLR Sbjct: 1 MTDTP-RVLIVDDQPDFAKGLARLLAPRLPGASLSYVLSGEAALADLERAPCAVLVTDLR 59 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M + G+ L + PG+ V++LTAHG I AVAA + G + FLTKPVD + L + I Sbjct: 60 MPGLSGLDLLPRALALAPGLGVVLLTAHGDIDTAVAALKAGAYDFLTKPVDSEHLSRVIA 119 Query: 119 DALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 LE++A T+ ++ RSP M+++ E VA SD +VLI G+SGT Sbjct: 120 KGLERAALLTENIRLRAAVKACGADVGLLGRSPAMVQVTEAIAAVAGSDYTVLIRGESGT 179 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+H S R + PF+++NC A+P+QLLESELFGH RGAFTGA +R GLF +AE Sbjct: 180 GKELAARAVHALSRRAAGPFLSVNCPAIPDQLLESELFGHVRGAFTGAERDRRGLFLSAE 239 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GG + LDEIGD+P +Q KLLRVLQER++RP+GS+R + ++VRI++AT++DL +A Sbjct: 240 GGVIVLDEIGDIPMSVQTKLLRVLQEREIRPVGSSRSLPVDVRILAATNQDLEARIADKT 299 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRLNV+++++P L ER +DIPLLA L +A + FS +A+ L Sbjct: 300 FREDLYYRLNVLTVRLPPLRERRDDIPLLATAFLERACRETGIGEKEFSPEALAGLAGRD 359 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------FVEARNQ--- 397 WPGNVR+L+N + + VI + ++ A G N T ++EA+ + Sbjct: 360 WPGNVRELLNFVRRLTVFCRGDVIGPSALQAADPGHNEPAETDDADLPAPYLEAKARVVD 419 Query: 398 -FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F Y+ +LL T+GNV+ AAR++G R K+L R + A F+ Sbjct: 420 AFTRRYVERLLSQTRGNVSEAARLSGLERVSLQKILRRLGIVAEGFR 466 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 171/458 (37%), Positives = 260/458 (56%), Gaps = 18/458 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+V+D+P L + L EG++V A+ G +G + + D+++SDL M Sbjct: 1 MSVCGRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M GM L ++ +QP V+I+TAHG++ AV A ++G F+ KP L + + Sbjct: 61 QMGGMDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNV 120 Query: 121 LEQSAPATDE-RWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 R +E ++ +S M + + RLVA SD SVL+ G+SGTGK Sbjct: 121 CSTRLLREQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A A+H S R +K ++ ++C +LPE L+ESELFG+ RGAFTGA R G F+AA GG Sbjct: 181 EMVAAAVHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P QVKLLR LQER++ LGSNR +D+NVRI+SA+ R L + G FR Sbjct: 241 TLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL++R+N V++ +P L +R ED+P+LA L++ AE K + FS + ++ W Sbjct: 301 EDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWT 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQFELNY 402 GNVR+L NV+E+ V + + ++ G + + T EA + E+ Sbjct: 361 GNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVEKAEVRA 420 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +R L T G AA + G +R ++ + H++ + Sbjct: 421 IRAALASTGGRRADAADLLGVSRKTLWEKIKHHDVTVD 458 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 171/463 (36%), Positives = 260/463 (56%), Gaps = 26/463 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M H +L++DD+ L ++ RL +GY V+ A + EGL LN VD V+ D+++ Sbjct: 1 MKHSQ-KILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + DG+ L +I+++Q + VI+LT +G+I A+ A + G + +LTKP + L + A Sbjct: 60 DGDGLLLLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + IV S M LL R VAQ+D SVLI G+SG GK Sbjct: 120 LEKRRLLLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ AQAIH S R ++P I +N GA+PE L+ESELFGH +GAFTGA + + GL + A+ G Sbjct: 180 ELIAQAIHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG+MP +QVKLLR L+ + R +G R ++VRI++AT+RDL + +A+G FR Sbjct: 240 TLFLDEIGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLN ++L +P L ER DI L +H L+ + + + + ++L+ +P Sbjct: 300 EDLFYRLNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALV-----------EQALEGENTALPTFVE----AR 395 GN R+L ++IE+ L++ +I+ + A E L F E + Sbjct: 360 GNTRELFHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSL 419 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + E Y+ L+ KGN T A + G + Y+ L + + Sbjct: 420 DDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQTYGVS 462 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 579 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 172/450 (38%), Positives = 253/450 (56%), Gaps = 16/450 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L+VDD+ L L EGY+ TA G + L L D+V++DL+M Sbjct: 1 MASR-GRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG+++ + Q P +++TA G+I AV A ++G +++LTKP+D L ++ A Sbjct: 60 GLDGIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E++ + ++ P M ++L VA S SVLI G++GTGK Sbjct: 120 VERARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH ASPR P + +NC AL E LLESELFGH RGAFTGAV REG F+ A GG Sbjct: 180 ELIAEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+ ++P QVKLLR LQER +G N + ++VRI++A++RDL + +A G FR Sbjct: 240 TLFLDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNVV+L+IP L ER DIP LA L + A+ + + F+ +A+ L + S+P Sbjct: 300 EDLYYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENT----ALPTFV-EARNQFELNYLRK 405 GNVR+L N IE+ L I + + E A+P E + + Sbjct: 360 GNVRELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVPGSTIYDLERYAILR 419 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 L+ KG+ + AA + G + + L + Sbjct: 420 TLEACKGSTSKAATILGISPRKIQYKLHEY 449 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 162/447 (36%), Positives = 257/447 (57%), Gaps = 15/447 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE-MD 63 A +L+V+D+ K+L L G V +SG E ++ +++ ++ISD+R+ + Sbjct: 3 KARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGNIS 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM L + +++ ++++TA G I AV A + G FS++TKP + + + +D + Q Sbjct: 63 GMDLLRDAKELY-DPSILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMMLQ 121 Query: 124 SAPATDERW---------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 +D R I+ S M L+ A A+SD ++LI G+SGTGKE+ A Sbjct: 122 QRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKELIA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AI+ S R +K F+AINC L ++ LES LFGH +G++TGA+ ++ GLF+ A+GGTLF+ Sbjct: 182 KAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTLFM 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+GD +Q K+LRVLQE + PLGS NVRII+AT++DL +++ + EFREDLY Sbjct: 242 DEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFREDLY 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+++ +P L ER DIPLL NH +++ + V + + + LM WPGNVR Sbjct: 302 YRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA----RNQFELNYLRKLLQIT 410 +L NVIE+ + L S ++ + + + +P A + E + K LQ+T Sbjct: 362 ELENVIERTMVLCSGNKLAKKHLPGCVLPQKGDIPPITIAPGTSWKEAEKELIMKTLQLT 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHEL 437 +GN AA+M G + + + + Sbjct: 422 RGNKQEAAKMLGISLRKIEYRVKEWGI 448 >UniRef50_Q6MIW1 Nitrogen assimilation regulatory protein NtrX n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIW1_BDEBA Length = 457 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 151/457 (33%), Positives = 243/457 (53%), Gaps = 16/457 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L++DD+ + +L L EGY V A G G++ + + D+V D+ M Sbjct: 1 MTALNTKILIIDDEAPIRDVLSASLRDEGYQVSLAHDGESGIQAIRDVQPDIVFLDIWMP 60 Query: 61 EM-DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 DG+++ +K P + ++++ HG+I AV AT+ G + F+ KP+ D + I + Sbjct: 61 GKYDGIEVLNLARKEFPHVEFVMISGHGTIETAVKATKLGAWDFIEKPLSMDKILIVISN 120 Query: 120 AL-------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 L E++ R A++ +P ++ + VA + VLI G++GTGKE+ Sbjct: 121 ILSYQQQKEEKALLLNKLRKSIALIGEAPSIVATKQIIARVAPTSSWVLIQGEAGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 AQ IH S R S+PF+ INCG +PE L +SE+FG +GA G ++G A GGTL Sbjct: 181 VAQNIHYMSSRASRPFVEINCGGIPEDLQDSEIFGIEKGAMPGVERTKKGKLDLAFGGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 ++ EIG++ Q KLL+ L R +G I+ +VR+I+A+ +DL K + G FRED Sbjct: 241 YIAEIGELNQAAQSKLLKYLDNRTYTRVGGTELIENDVRVIAASSKDLEKEVKDGRFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV+ ++PAL E EDIP+L ++ + +AFS +++++ WPGN Sbjct: 301 LYYRLNVIPFRVPALREHPEDIPVLVSYFSDNVSRESGYPKKAFSEKGVEKMLAYQWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALV--------EQALEGENTALPTFVEARNQFELNYLR 404 VR+L N IE+ LT + + + E L TF EAR QFE YL Sbjct: 361 VRELKNFIERVYILTPGDFVDVHDLRFAGLIDKDDEKAVEMQDLSTFREARAQFEKEYLL 420 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + + GN++ A + G R+ ++ + + +D + Sbjct: 421 RKIGENSGNISRTAEVIGLERSYLHRKIKAYGIDTKE 457 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 163/446 (36%), Positives = 247/446 (55%), Gaps = 20/446 (4%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + LL + + + V A+ GAE L +++ D+VI+D++M +DG Sbjct: 2 ARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGT 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 L +I + PV+ +TA ++ AV A + G +LTKP +++++ ++ L+ S Sbjct: 62 GLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLSR 121 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + R + ++ S +M +++ A V +SD ++LI+G+SGTGKE+ A+ Sbjct: 122 IMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLAK 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 IH S R+ K F+ +NC A+ L+ESELFG+ +GAFTGA G F+ A GGTLFLD Sbjct: 182 YIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+P Q KLLR LQE+K++ +G N +I ++VRI+ ATH+DL + + FR DLYY Sbjct: 242 EIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLYY 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R+NV L P L ER EDIP LA H L+ E + A + L WPGNVR+ Sbjct: 302 RINVFPLSPPPLRERKEDIPALAVHFLK---ESFNGNDVVLTDGAKRLLAQYPWPGNVRE 358 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTA-------LPTFVEARNQFELNYLRKLLQ 408 L N IE+ V L + I+ + + LP E + +R+ L Sbjct: 359 LANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIVRQALD 418 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSR 434 + N T AA+M G R +F L+ R Sbjct: 419 MAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 161/458 (35%), Positives = 242/458 (52%), Gaps = 19/458 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+ DDD +L L + + V A G + L++L VDLVI+D +M Sbjct: 1 MS-RDLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG +L ++ +P +++TAHGS+ + A + G +L KPVD + ++ Sbjct: 60 GLDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKT 119 Query: 121 L----------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + IV +SP M L E ++S +VLI G+SGTGK Sbjct: 120 LNINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H P PF+A+NC A LESELFGH +GAFT A + G F+ A G Sbjct: 180 ELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GD+PA +QVKLLRVLQ++ +G+ I + R+++AT+RDL + +G+FR Sbjct: 240 TLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + PAL E EDIPLL +H L++ + ++ S AMK + WP Sbjct: 300 EDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNY 402 GNVRQL N IE A+ +I A + + + P T E + E + Sbjct: 360 GNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVERIEKHM 419 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L+ + HAAR G + ++ + L + Sbjct: 420 ILRALEQNQWVKAHAARTLGVSERVVSYKMANYGLTKD 457 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 139/439 (31%), Positives = 235/439 (53%), Gaps = 11/439 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + KL L S G ++ T S E L++ D++I D+R+ + +G++L Sbjct: 9 ILVVDDESNIRKLFSRELASPGRTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDANGLEL 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++ + P + +I++T + + +AV A + G + ++TKP D + Q I+ A ++ Sbjct: 69 MTKLLETVPNVAIILITGYADVDNAVQAMKNGAYDYITKPFSLDRMEQVIEKAYQRVRLQ 128 Query: 128 TDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + + S + + A +DV VL+ G+SGTGK + A A+H Sbjct: 129 RENELLRHNSEHKSMPKFIGHSKSVQDVRYLIEKAAPTDVPVLLTGESGTGKNVAAAALH 188 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R +P I NCG ++LL SELFG+ +GAFTGA + +GL A TLF DE+G Sbjct: 189 AKSRRADQPLIIKNCGTFDKELLRSELFGYCKGAFTGADRSHDGLLSLAHKATLFFDEVG 248 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++ LQ LLRVL+ + R +G + ++VR I AT++DL K +A G F + Y+R+N Sbjct: 249 ELTLELQGALLRVLETQHFRRVGDKEERCVDVRFIFATNKDLEKEVAAGRFHDAFYHRIN 308 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V ++++P L ER EDIP L + L A+ + + S AM++LM WPGNVR+L N Sbjct: 309 VFNIELPPLRERREDIPALVEYFLVSLAKDGQEY--KISPRAMQQLMDNPWPGNVRELKN 366 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAA 418 +IE+ + L + +I+ + + + E +++ ++ +GN + AA Sbjct: 367 IIERGMILAENNIINVQALPFCQKSCQNPREKGFSTLEELERSHISMVMHAVQGNKSRAA 426 Query: 419 RMAGRNRTEFYKLLSRHEL 437 ++ G R Y+ L + L Sbjct: 427 QVLGIGRKTLYRKLEEYRL 445 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 146/448 (32%), Positives = 252/448 (56%), Gaps = 11/448 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DDD L+LL + + GY+V + + GL D+++ D+R+ +MDG Sbjct: 3 KKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDMDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + + + VI++TA+ + V A + G + ++TKP+D D L A+ AL+ S Sbjct: 63 IEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALKNS 122 Query: 125 APATDERW--------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + ++ S M + + ++++++V+VLI G++GTGKE+ A+A Sbjct: 123 ELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH+ P PFI INC A+ LLESELFGH +GAFTGA + ++G F+ A GT+FLDE Sbjct: 183 IHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P LQ KLLR LQ++ + +G + + R+I AT++DL + + G FREDLYYR Sbjct: 243 MGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+ + +P L +R EDIP L +H++++ + A+ R+M WPGNVR+L Sbjct: 303 LSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVREL 362 Query: 357 VNVIEQCVALTSSPV-ISDALVEQALEG--ENTALPTFVEARNQFELNYLRKLLQITKGN 413 NV+ T + DA++ G ++ P + + E ++ K+L T GN Sbjct: 363 RNVLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAALSLREVEREHILKILHYTNGN 422 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDAND 441 +T +A++ G +R + + ++++ Sbjct: 423 ITSSAQILGISRPTLRQKIRQYKILPQQ 450 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 168/459 (36%), Positives = 252/459 (54%), Gaps = 32/459 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A +L+VDD+ + + L ++V TA G E + +L E DLV++DLRM + DGM Sbjct: 5 ARILIVDDEHNTREAMARYLRLR-FNVATAADGGEAIELLKHEDFDLVLTDLRMPKADGM 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + I+LTA+GSI DAVAA ++G F F+ KPV D L ID AL Sbjct: 64 SVLEATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAALAARR 123 Query: 126 PATDERWRE-----------------AIV--TRSPL--MLRLLEQARLVAQSDVSVLING 164 A +++ + IV T P M +++ + VA + +VL+ G Sbjct: 124 KAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTVLLTG 183 Query: 165 QSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF 224 +SGTGKE+FA+ IH+ S R F+ ++C AL LLESELFG+ +GAFTGA +G F Sbjct: 184 ESGTGKEVFARMIHDWSGRTGY-FVPVHCAALTATLLESELFGYEKGAFTGAAERHKGRF 242 Query: 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAM 284 + A+ GTLFLDEIG++ QVKLLRVL+ R +G I ++VR+++AT+RDL K + Sbjct: 243 EVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNRDLRKMV 302 Query: 285 ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 + G FREDL+YRL+VV+L++P L +R DIP L + + + A ++ V + DA+ L Sbjct: 303 SEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVTGIAPDALAEL 362 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF---------VEAR 395 + WPGN+R+L N IE V L ++ + + +A+ +P +E Sbjct: 363 VAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAATAPEPEIETF 422 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E + K L GN T AA++ G +R ++ L+ Sbjct: 423 ENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRLAE 461 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 153/455 (33%), Positives = 259/455 (56%), Gaps = 24/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL+V+D+ LL RLT + ++ A + + L L + D+++ D R+ + +G+ Sbjct: 2 KLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGLS 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ P + V++LT HGS+ A+ + +QG + +LTKP + L + A E+ Sbjct: 62 LLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKRL 121 Query: 127 ATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A + E I+ +S + L++ V S+ ++L+ G+SG+GKE+ A++ Sbjct: 122 AEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIARS 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R KPF A+NC ALP QL+ESELFGH +GAFTGA + GL + A+GGTLFLDE Sbjct: 182 LHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +M +Q KLLR+L+ + +G+ R + +R+++AT++ L + +A G FREDLY+R Sbjct: 242 IAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYHR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV +++P L R DIPLLA++LL Q ++ P V S +A++ L++ +PGNVR+L Sbjct: 302 LNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNNPKV--LSPEALEVLLSYDFPGNVREL 359 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTAL---------PTFVE---ARNQFELNYLR 404 N++E+ L+ P I + Q G+ T + P + + + E ++ Sbjct: 360 ANILERGCLLSYGPTIEAEHLFQPQMGKRTPVSKKGLEEEAPRWGDTDLSLENCERQHIL 419 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++L++ N T AA+ Y+ + + ++ Sbjct: 420 RVLKMAGENKTKAAQELKIGLKTLYRKVKEYGIEP 454 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 164/453 (36%), Positives = 252/453 (55%), Gaps = 16/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + H+L+VDD+ L +LL + L A+S + + L DL ++D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++L I + P MP ++TA+GS+ A A + G + F+ KPV D L Q I+D Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 L + + ++ +P M+ L Q R +A+S + I+G+SG+GKE A+ IH Sbjct: 121 LGINEVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIARLIHTL 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 PR KPF+A+NCGA+P +L+ESE FGH +GAFTGAV +R+GLF+ A+GGTLFLDE+ D+ Sbjct: 181 GPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLLR +QE+ VRP+G ++ +N+RI+ ATH++L M G FR+DL+YRLNV+ Sbjct: 241 PLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFYRLNVI 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +P L ER EDIP L H+L + ++ + + S+DA+ + ++PGNVR+L N + Sbjct: 301 EAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRELENTL 360 Query: 361 EQCVALTSSPVISDALVE----------------QALEGENTALPTFVEARNQFELNYLR 404 E+ + L I + + + + E + E + Sbjct: 361 ERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIEKQEIL 420 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 K L T N T AA+ G L + EL Sbjct: 421 KALDTTHWNRTAAAKKLGMTFRSLRYRLKKLEL 453 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 153/459 (33%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 +L+ DD+ + ++L + VV S + LR L++E+ L+I+DL++ + + Sbjct: 13 RVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSI 72 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +P+I+LTA+GS+ A+ ++GVF +L P D D L A+ AL+ S+ Sbjct: 73 DFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSS 132 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ SP ++ L V ++D +VL+ G+SGTGKE+ ++ Sbjct: 133 LTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSR 192 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R PF+A+NC A+PE LLESELFG+ +GAFTGA ++G F+ A GGT FLD Sbjct: 193 AIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFFLD 252 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI +M A +Q K+LR+++ +++ LG I ++VRII AT+RDL + + G+FR+DLYY Sbjct: 253 EISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYY 312 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 R++V + +PAL ER+ DI L+ H + + + S++ K L+ W GN+R+ Sbjct: 313 RISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNIRE 372 Query: 356 LVNVIEQCVALTSSPVISDALVEQAL----------------EGENTALPTFVEARNQFE 399 L N+IE+ V L + VI + ++ N +P + + E Sbjct: 373 LQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDLE 432 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + K L+ +K N+T AA++ G R F L ++ + Sbjct: 433 KQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 180/463 (38%), Positives = 266/463 (57%), Gaps = 27/463 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTA----ESGAEGLRVLNREKVDLVISDL 57 S +L+VD+D + + LT GY A ESG + L ++ E D++I++L Sbjct: 11 SEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITEL 70 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 MDE+DG+++ + P VI+LT H SI A+ A Q G ++LTKP+D L QA+ Sbjct: 71 MMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAV 130 Query: 118 DDA----------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 D A E S ++ E ++ SP M RL+E+ R VA +D +VLI G+SG Sbjct: 131 DRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESG 190 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH S R +KPF+ +N ALPE +LESELFGH GAFTGA + R G F+ A Sbjct: 191 TGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYA 250 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGTLFLDE+G+MP Q+KLLRVL+ER++ LG+N +I INVR+++AT+ DL + +G Sbjct: 251 NGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKG 310 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FR+DLY+RL+VV++ +P L++R DIP L +H L+Q AER K + + + LM Sbjct: 311 TFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAY 370 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQA-------------LEGENTALPTFVEA 394 +WPGN+R+L NV+E + L + + + ++ + Sbjct: 371 AWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRS 430 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N E Y+ + L++T G AA + G Y+ + +EL Sbjct: 431 LNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL 473 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 167/488 (34%), Positives = 256/488 (52%), Gaps = 59/488 (12%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ L +L RL GY ++ A + EG+ +L + V+ D+R+ + DG+Q Sbjct: 6 RVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDGLQ 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++K QP + VI+LT HG++ A+ A + G + +LTKP + L + ALEQ Sbjct: 66 LLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQRKL 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + I+ S M L R +AQ+D VL+ G+SGTGKE+FA+A Sbjct: 126 MVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR+ + +I +N GA+ E L+ESELFGH +GAFTGA + + GL + A+ GTLFLDE Sbjct: 186 LHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+MP LQVKLLR ++ + R +G NR +NVRI++AT+R+LP+ + G FR+DLYYR Sbjct: 246 IGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERH------------KPFVRAFSTDAMKRL 344 L + L IP L ER DI LA H LR RH + + + + L Sbjct: 306 LTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQEAL 365 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDALV-EQALEGENT-----ALPTFVEA---- 394 + +PGNVR+L +++E+ + L P+I + + EG ++ LP A Sbjct: 366 LAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAEMD 425 Query: 395 ---------------------------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTE 427 + E +Y+ ++ GN AAR+ G + Sbjct: 426 EKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISVRN 485 Query: 428 FYKLLSRH 435 Y+ + + Sbjct: 486 LYRKMEEY 493 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 247/483 (51%), Gaps = 45/483 (9%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A LL++DDDP +L +L E V+ L+++ E+ ++ I D+ M Sbjct: 1 MTAKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G Q+ E +K+ PG+ +I+ T H + +A+ A + G + ++TKP D + L ++ ALE Sbjct: 61 GFQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALEC 120 Query: 123 ------------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + +E + ++ S M+ + + VA SD +VLI G+SGTGK Sbjct: 121 NLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AI++ S R ++PF+A+NC ALPE LLESELFGH +GAFT A + R G F+ GG Sbjct: 181 ELLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG+M Q KLLRVL+ ++ +G N I ++VRII+AT+R L ++ FR Sbjct: 241 TIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL+YRL VV+ +P L +R EDIPLL + +++ + ++ +R + + L+ W Sbjct: 301 MDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPWE 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ------------- 397 GN+R+L NVI S V+ +E L + ++ Sbjct: 361 GNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEPV 420 Query: 398 -------------------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + ++ + N AA++ G +R L R++ Sbjct: 421 FDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERYKSG 480 Query: 439 AND 441 AN+ Sbjct: 481 ANE 483 >UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional response regulator n=90 Tax=cellular organisms RepID=Q3JI73_BURP1 Length = 472 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 164/456 (35%), Positives = 236/456 (51%), Gaps = 24/456 (5%) Query: 1 MSHKPAH----LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISD 56 M+ A+ + +++DD + L EG V E L L R+ ++SD Sbjct: 26 MNADNAYGREAVYVIEDDAAVRLGCSQALALEGIGVREFEDAESALAALKRDPPAAIVSD 85 Query: 57 LRMDEMDGMQLFAEIQK--VQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALY 114 +R+ M G+ L ++ +PVI++T HG + AV A + G + F+ KP D L Sbjct: 86 VRLPGMGGLALLDSMKAHPRDADIPVILMTGHGDVAMAVGAMRCGAYDFIEKPFHSDRLV 145 Query: 115 QAIDDALEQSAPATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 + ALE + R A ++ +P M R+ + + VLI G++G Sbjct: 146 DTVRRALEHRKLVIENRSLRAQLSGERPLLGSAPAMQRVHALIDAIGPTSADVLIIGETG 205 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+A+H AS R + PF+A+NC ALPE + ESE+FGH GAFTGA R G F+ A Sbjct: 206 TGKEVLARALHAAS-RRTGPFVALNCAALPEAVFESEIFGHEPGAFTGAQQRRIGKFEYA 264 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGTLFLDE+ MP LQ KLLR LQER + LGSN + ++VR+I+A +DL + A G Sbjct: 265 SGGTLFLDELESMPLSLQAKLLRALQERSIERLGSNVSVAVDVRVIAAVKQDLKQLAADG 324 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FR DLY+RLNV S+++P L RT+DIP L +H LR AA R + ++ + M R Sbjct: 325 LFRSDLYFRLNVASIELPPLRRRTDDIPELFSHFLRAAAVRFEKPEPVWTQEDMMRWQLY 384 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLL 407 WPGNVR+L N E+ +E L + E Y+ + L Sbjct: 385 DWPGNVRELKNTAERFCL----------GLEDGLPRSPAGFDSLASRMVSAERAYIEEAL 434 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + G V AA + G R Y ++RH +D F+ Sbjct: 435 RNAGGQVAKAAELLGLPRKTLYDKITRHGIDMTAFR 470 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 248/484 (51%), Gaps = 47/484 (9%) Query: 1 MS-HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ H +L+VDD+ L + ++ A SG E L +L +V ++++D RM Sbjct: 1 MTQHADYPILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRM 59 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQG-VFSFLTKPVDKDALYQAID 118 M G++L + ++QP IILTA+ + V A G ++ ++TKP + L + Sbjct: 60 PRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILT 119 Query: 119 DALEQSAPATDERW---------------------REAIVTRSPLMLRLLEQARLVAQSD 157 ALE+ A + + I+ S + +L + VA ++ Sbjct: 120 HALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTN 179 Query: 158 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAV 217 +VL+ G++GTGKE+ A AIH S R ++PF+ +NC AL +LESELFGH +GAFTGAV Sbjct: 180 STVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAV 239 Query: 218 SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATH 277 + R G F+ A+GGTLFLDE GD+P +Q+KLLR LQER+ +G + I ++VR+ISAT+ Sbjct: 240 AQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATN 299 Query: 278 RDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS 337 RDL + G FREDLYYRLNV + +P L +R ED+P L H + + A Sbjct: 300 RDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVR 359 Query: 338 TDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTAL--------- 388 A+ +L + +WPGNVR+L N+IE+ + L + ++ +N Sbjct: 360 GAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVIS 419 Query: 389 --------------PTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E E + ++ + N+ AARM G NR+ Y + + Sbjct: 420 ETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRK 479 Query: 435 HELD 438 H L+ Sbjct: 480 HGLE 483 >UniRef50_C5V657 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V657_9PROT Length = 464 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 170/438 (38%), Positives = 261/438 (59%), Gaps = 10/438 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LLVDD+P +L+LL + L G V A E L L + DL ++D+RM + DG++ Sbjct: 24 SVLLVDDEPDILELLEMTLLKMGLVVDKAACVQEALAKLAANRYDLCLTDMRMPDGDGLE 83 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + I +PV ++TAHG++ +A+ + G F +L KP+ + L + AL P Sbjct: 84 VVKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQP 143 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 + + ++ +P M ++ + VA+S V I+G+SG+GKE+ A+ I + PR+ + Sbjct: 144 SPSAD--KLLLGNAPAMQKVRDLIERVARSQAPVYISGESGSGKELAARLIVQSGPRSDQ 201 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 P IA+NCGA+PE L+ESE FG+ +GAFTGA +R+G FQAA GGTLFLDE+ D+P +QV Sbjct: 202 PVIAVNCGAIPENLMESEFFGYKKGAFTGADKDRDGFFQAANGGTLFLDEVADLPLTMQV 261 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRV+QE++VR +GS + ++VR+ISATH+DL + + G+FR+DLYYRLNV+ +++P+ Sbjct: 262 KLLRVIQEKRVRKVGSTTEEPVDVRLISATHKDLAERVKSGQFRQDLYYRLNVIPIQMPS 321 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L E EDI +A +L + FS +A++ L +PGNVR+L N+IE+ +AL Sbjct: 322 LRELREDIAQIAQQVLNRLRAG---VPTRFSDEALRVLQQYDFPGNVRELENIIERALAL 378 Query: 367 TSSPVISDALV-----EQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMA 421 S VI+ + EQA GE T ++ E L + LQ T N T AA++ Sbjct: 379 CSEGVIAAEDLCLSPVEQAEVGERTDKYPLPAYLDRVEKEALMEALQQTNFNRTAAAKLI 438 Query: 422 GRNRTEFYKLLSRHELDA 439 G + R + + Sbjct: 439 GLTFRTMRYRMERLGIKS 456 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 164/481 (34%), Positives = 249/481 (51%), Gaps = 49/481 (10%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKV-DLVISDLRMDEMDGM 65 +L+VDDDP +L+ L EG++V AESG + + L D+V+ DL M + G Sbjct: 4 TVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQ 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 E++ PVI++TA G I V A Q G F KP + + +I +AL A Sbjct: 64 DTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALSMGA 123 Query: 126 PATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + ++ SP M+ + A+S + +LI G+SG GKE+ A+ Sbjct: 124 LKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIAR 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R KPF+A+NCGA+PE L+ES LFGH +G+FTGA G FQ A GGTLFLD Sbjct: 184 AVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+G++P +QVKLLR LQE ++ P+GS R + ++VRI+SAT+RDL +A+A G FREDLYY Sbjct: 244 EVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV ++ P+L ER EDIP L + +R+ V + + + L WPGNVRQ Sbjct: 304 RLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVRQ 363 Query: 356 LVNVIEQCVALTSSPVISDALVE---------------------------------QALE 382 L N + + + L +P + L Sbjct: 364 LENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELAAELP 423 Query: 383 GENTALPTF-----VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 +P + ++ E + ++ +++ G+++ AR G R+ Y+ + + L Sbjct: 424 QPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVRENGL 483 Query: 438 D 438 + Sbjct: 484 E 484 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 576 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 163/456 (35%), Positives = 252/456 (55%), Gaps = 24/456 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 H+L+++D+ LL RL +GY + SG EGL+ + D+ + D+R+ MDG+Q Sbjct: 10 HVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPGMDGIQ 69 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++++Q V+++T HG+I A+ A +QG + +LTKP+D L + ALE+ Sbjct: 70 VLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKALEKRRL 129 Query: 127 ATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A + IV SP +L++++ R A D+ VLI G+SGTGKE+ A+A Sbjct: 130 ADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKELIAKA 189 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ S R KP+IAINCG LP LLESELFGH +GAF+GAV++R GL +AA GTLFLDE Sbjct: 190 LHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGTLFLDE 249 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ LQ KLLR L+ + R +G+NR VR+++AT+++L +A+A G+FREDLYYR Sbjct: 250 IGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFREDLYYR 309 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+ + L++P L ER DIPLL + L++ R+ +RL +PGNVR+L Sbjct: 310 LSGMVLRLPPLRERRGDIPLLVQYFLKR---RYPHRQPPIDPSVWERLEAYRFPGNVREL 366 Query: 357 VNVIEQCVALTSSPVISDALV-----------EQALEGENTALPTFVEARNQFELNYLRK 405 +++++ L ++S ++ + + ++ Sbjct: 367 AHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMPLEEVRRRHILA 426 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 L + GN AA G Y+ L L D Sbjct: 427 TLAMVGGNKAVAAEKLGIGLRTLYRYLEEWNLAQQD 462 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 162/464 (34%), Positives = 249/464 (53%), Gaps = 32/464 (6%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 A + +VDD+ L+ L + LT +GY V L L + DL++ DLR+ +M+G+ Sbjct: 2 AEIAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNGL 61 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +I+ + +P +++TAHG + AV A + G F +L KP D + L I L ++ Sbjct: 62 EVLRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEAQ 121 Query: 126 PATD---ERWR-------EAIVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIFA 174 + R R E I+ SP ML L + + ++ + VLI G+SGTGK++ A Sbjct: 122 LVKEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLLA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIHN +PR+ +PFI INC +LPE LLESELFGH +GAFT A + + GL + A GTLFL Sbjct: 182 KAIHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFL 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++ LQ KLL+ ++ + R +G ++ +NV II+AT+R+L +A+ FR+DL+ Sbjct: 242 DEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLF 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV L P L +R EDI + ++ L + + + + DA + WPGNVR Sbjct: 302 YRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQ-------ALEGENTALP--------------TFVE 393 +L N+IE+ V L+ I+ + A E EN P E Sbjct: 362 ELKNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMDE 421 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + L+ T AA+ G +R + +SR ++ Sbjct: 422 ILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 171/497 (34%), Positives = 258/497 (51%), Gaps = 69/497 (13%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE--MD 63 A +LLVDD+ +++++ L +EG+ V + + + L ++V++DL +D+ Sbjct: 2 AKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRAH 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ + + + P VI++TA GSI AV A + G + +L KP D L I AL Sbjct: 62 GLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALSY 121 Query: 124 SAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + ++ + I+ + M + + A +D ++LI G+SGTGKE+ Sbjct: 122 NEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H S R PFI +NC ALPE LLESELFGH +G+FTGA+++++GLFQ A+GGT+F Sbjct: 182 ARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG M + LQ +LLRVLQER+VR +G N INVR+++AT+ L K + G FREDL Sbjct: 242 LDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLR-QAAERHKPFVRAFSTDAMKRLMTASWPGN 352 YYRLNV+S+++P+L ER +DIPLLA H LR + R V+ + A+ L T WPGN Sbjct: 302 YYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQ--------------------------------- 379 VR+L N IE+ L +I + Sbjct: 361 VRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTSL 420 Query: 380 -----ALEGENTALP-----------------TFVEARNQFELNYLRKLLQITKGNVTHA 417 A+ G + L + + + EL YL + L + G+ Sbjct: 421 VPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEKT 480 Query: 418 ARMAGRNRTEFYKLLSR 434 A G + Y+ LS Sbjct: 481 ALHLGISLATLYRKLSE 497 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 155/449 (34%), Positives = 240/449 (53%), Gaps = 13/449 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 ++L+VDD+ + + L G+ S E L+ + D V++DL+M MDG Sbjct: 10 TGNVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDG 69 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++L +I++ +P++++TAHGS+ AV A + G +L KP++ D L ++ LE + Sbjct: 70 LELVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLESA 129 Query: 125 APATD-------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A E + A++ S M ++ +Q VA +D +VLI G+SG GKE+ A+ I Sbjct: 130 ASGDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTI 189 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H +S R + I++NC L L+ESELFGH RGAFT A S R G F+ AE GT+ LDEI Sbjct: 190 HESSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEI 249 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ LQ KLLRVLQER +GS+ ++ +VR+++ ++RDLP + G FR DLYYRL Sbjct: 250 SEIDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRL 309 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV +++P L +R +DIPLL ++ L+Q A R + V +A+ LM WPGNVR+L Sbjct: 310 AVVPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELE 369 Query: 358 NVIEQCVALTSSPVISDALV------EQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 N++ + L IS E E ++ ++ E + L+ Sbjct: 370 NIVTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVKLDEMERRLISATLEHYD 429 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELDAN 440 G+ A G + L + L Sbjct: 430 GHREKTAAALGISPRTLSNKLRSYGLAPR 458 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 575 bits (1484), Expect = e-163, Method: Composition-based stats. Identities = 164/454 (36%), Positives = 245/454 (53%), Gaps = 24/454 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+V+DDP L + + L G V + G L+VL + +V+SD+RM Sbjct: 1 MAEHNLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMM 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ L EI+ P +PV+++TA+ + AV A + G FL KP + AL I+ Sbjct: 61 PMDGITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK- 119 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 PA+D+ +V P L A+ VAQ+D +VL+ G+SG GKE+ A+ IH Sbjct: 120 --YELPASDD--GSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHRQ 175 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R + PF+AINC A+P+ LLE+ LFG+ +GAFTGA + G F+ A+ GTL LDE+ +M Sbjct: 176 SARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLDEVTEM 235 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLRVLQER+V +G + + +N+RII+ ++RD+ +A+A+G FREDLYYRLNV Sbjct: 236 PMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYYRLNVF 295 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + IP+L +R DI +A H + + R + S A L SWPGNVR+L NVI Sbjct: 296 PVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRELENVI 355 Query: 361 EQCVALTSSPVISDALVEQALEG-------ENTALPTFVE------------ARNQFELN 401 ++ + + + I ++ A + A P VE E Sbjct: 356 QRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDTDKKVDNMKDLERE 415 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 ++ + L G+ A G + L ++ Sbjct: 416 HILRTLAEVGGSRKKAIERLGISERTLRYKLQQY 449 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 160/395 (40%), Positives = 233/395 (58%), Gaps = 13/395 (3%) Query: 1 MSH--KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDL 57 MS KPA +L++DDD + L L+S GY+V+ A +G +G+ + + DLV+ D+ Sbjct: 1 MSDLAKPASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDV 60 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 RM M G++ I+ P VI++TA G+ A+ A + G F ++ KP D + Sbjct: 61 RMSGMGGIEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALA 120 Query: 118 DDALEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 D AL+ A + +RE IV SP+M + + V SDV+V+I G+SG Sbjct: 121 DAALKTRADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESG 180 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A++I S R+SKPFIA+NC A+P+ L+ESELFGH +G+FTGA R G F+ Sbjct: 181 TGKELVARSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELC 240 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGT+FLDEIGDM Q K+LRVLQ +++ +G I ++VR+++AT++DL + Sbjct: 241 DGGTIFLDEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAK 300 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FREDLYYRLNVV +K+P L ER EDIP + + L+ ++ K S +AM L Sbjct: 301 TFREDLYYRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRH 360 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALE 382 SWPGNVR+L NVI + + I + + L Sbjct: 361 SWPGNVRELENVIYRSAVIAQGEAILEKDLPAELR 395 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 178/434 (41%), Positives = 260/434 (59%), Gaps = 7/434 (1%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +H+L+V+DD L + L +T G++ +TA+ G E L +L +V++D+RMD++D Sbjct: 16 SMSHVLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMDKLD 75 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G QL EIQK +PG+PVI++TA+GS+ DAV A + G +L KP L + I ++ Sbjct: 76 GNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQVLIEKIKQYIKT 135 Query: 124 SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 D + R P LL A VAQSDV V+I+G+SGTGKE+ A IH+ S R Sbjct: 136 DLSEEDNDP----IARDPKSQALLTMALRVAQSDVGVMISGESGTGKEVLAHFIHDHSYR 191 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 + +PFIAINC A+PEQ+LE+ LFG+ +GAFTGA + G F+ A+GGTL LDE+ +M Sbjct: 192 SKQPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKSTPGKFEQAQGGTLLLDEVSEMSLG 251 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 LQ KLLRVLQE++V +GSN+ I+++VRII+ T+R L + + G FREDLYYRLNV L+ Sbjct: 252 LQAKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEEVQAGRFREDLYYRLNVFPLQ 311 Query: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 L ERT DI LAN+L+R+ + +P V S DA K +++ SWPGN R+L NVI++ Sbjct: 312 WHPLRERTSDIIPLANYLIRKHCQHKQPIVPVISPDAQKAMLSYSWPGNARELDNVIQRA 371 Query: 364 VALTSSPVISDALVE---QALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 + L + +I + ++ + E + K L +GN A + Sbjct: 372 LVLQTQGIIEEEHLQITNSTTMPSEEKTKGTSKNLQIHEYELIEKTLLENEGNRQKVAAL 431 Query: 421 AGRNRTEFYKLLSR 434 G + L++ Sbjct: 432 LGVSERTLRYKLAK 445 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 172/453 (37%), Positives = 254/453 (56%), Gaps = 20/453 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD----EMD 63 LL+VDD+ + + L L+ Y++ A E L+V +V DL + + Sbjct: 4 LLIVDDNGDIRRQLKWGLSKAPYALHFATHVEEALQVFQAVTPGVVTLDLGLPPHPEDAS 63 Query: 64 -GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-- 120 G+ ++ +P VI++T +A A + G + F KP+D L I+ A Sbjct: 64 QGLACLEQMIAARPSTKVIVITGFDGQENARRAVELGAYDFFRKPLDLGELKVMINRAFH 123 Query: 121 ---LEQSAPATDE------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 +E+ APA R R IV P M + VA SD VL++G+SGTGKE Sbjct: 124 LLEIERVAPAETPKKPAAPRLRHGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGKE 183 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A AIH ASPR +P ++INCGA+PE LLESE FGH RGAFTGA + +G + AE GT Sbjct: 184 LVAMAIHQASPRRQQPLVSINCGAIPENLLESEFFGHERGAFTGATNTVKGKVEYAENGT 243 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIG++P LQVKLLR LQ+ + + +G + +++NVR+++AT+ ++ +AM G+FRE Sbjct: 244 LFLDEIGELPVNLQVKLLRFLQDMRFQRVGGRKTLEVNVRVLAATNVNIQEAMRLGQFRE 303 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYR+ VV + +P L +R ED+ LLANH L ++ ++ FS +AM+ + WPG Sbjct: 304 DLYYRIGVVGIHLPPLRDRGEDVVLLANHFLEIHGKQLPKKIQGFSPEAMEAIRNYPWPG 363 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV----EQALEGENTALPTFVEARNQFELNYLRKLL 407 NVR+L N + + + L I+ + E + G A T EAR Q E + + L Sbjct: 364 NVRELENKVRRAIILVEGSRITPQSLGLAGEASSPGPARAETTLREARTQLERQMMLQAL 423 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + +GN+ A+ G +R FY LL +HE+D Sbjct: 424 RRFEGNIVKASEALGVSRPTFYDLLRKHEIDPK 456 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 574 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 169/467 (36%), Positives = 261/467 (55%), Gaps = 27/467 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE-KVDLVISDLRM 59 MS +++L+VDD+ + L L+ +G+ V A++G E L +E VISDLRM Sbjct: 1 MSPDESNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRM 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 E DG L ++++ P VI++TA G++P AV A + G F+ KP + L + + Sbjct: 61 PEGDGWSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKLTA 120 Query: 120 ALEQSAPATDERWREA----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + P EA I+TR P ++ +L+ VA++ ++LI G+SGTGKE+ A+ Sbjct: 121 SAGRRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H SPR +PF+A+NC ALPE LLESELFG+ +GAF+GA++ + G F+ A GTL LD Sbjct: 181 YVHERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+M LQ KLLRV+QER+V +G + +++RI++ T+R++ + + G+FREDLYY Sbjct: 241 EIGEMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V +++PAL +R DI LLANH + H V + +A++ L +AS+PGNVR+ Sbjct: 301 RLRVFPVRVPALRQRPADIVLLANHFREKFRLEH-MEVGELTAEAVECLRSASFPGNVRE 359 Query: 356 LVNVIEQCVALTSSPVISDALV----EQALEGENTALPTFVEARN--------------- 396 L NVI Q L I + + G ++A T + + Sbjct: 360 LENVIIQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPGQS 419 Query: 397 --QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + E +R L+ N T AA+M G + L+ + + D Sbjct: 420 VWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGMGLQD 466 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 157/400 (39%), Positives = 230/400 (57%), Gaps = 11/400 (2%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMD 60 KP +L++DDD + L L+S+ Y VV A SG EG+ ++ + D+V D+RM Sbjct: 3 DSKPPVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMG 62 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G++ I+ V P VI++TA G+ A+ A + G F ++ KP D + ++A Sbjct: 63 GMSGLEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENA 122 Query: 121 L----------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L E + +RE IV SP+M + + V SDV+V+I G+SGTGK Sbjct: 123 LKAHHDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGK 182 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A++I S R +K FIA+NC A+P+ L+ESELFGH +G+FTGA R G F+ + G Sbjct: 183 ELVARSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCDRG 242 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGDM Q K+LRVLQ+ +++ +G I ++VRII+AT++DL + FR Sbjct: 243 TIFLDEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFR 302 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNVV +K+P L ERT DIP + + L+ ++ K V S +AM L WP Sbjct: 303 EDLYYRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHDWP 362 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT 390 GNVR+L NV+ + + +I + + L T Sbjct: 363 GNVRELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLAT 402 Score = 53.0 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%) Query: 381 LEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L E T + E + ++ + T GN+ +A + G R K L L Sbjct: 463 LHHELTITADIEPILKRLEREMIARVYRATDGNIAKSADLLGITRPTLKKRLEELAL 519 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 152/444 (34%), Positives = 231/444 (52%), Gaps = 18/444 (4%) Query: 11 VDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAE 70 V+D + L L G + +G + + L DL++ DLR+ +M GM + Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 71 IQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPATDE 130 ++ P +P+I +TAHGSI AV A + G FL KP + D L +++A+ +++ ++ Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 ------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 + + + S M ++ A S S+ I G+SGTGKE+ A+AIH AS R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 KPFIAINC A+P+ L+ESELFGH +GAFTGA ++R+G + A+GGTLFLDE+ +M L Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ L + Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER ED+ +A LL + FS + R WPGNVRQL NV+ V Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 365 ALTSSPVISDALVEQALEGENTALPTFVEARNQF------------ELNYLRKLLQITKG 412 L + I+ ++ L + ++ E + + ++ G Sbjct: 362 VLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACDG 421 Query: 413 NVTHAARMAGRNRTEFYKLLSRHE 436 N+ AA + + Y+ L Sbjct: 422 NIPRAAGYLDVSPSTIYRKLQAWN 445 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 170/442 (38%), Positives = 251/442 (56%), Gaps = 12/442 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +LLV+DD ++L L G V A G E L L + DL++SD +M Sbjct: 1 MGAAGARVLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQ 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG L A ++ PV+++TA G+I +AV A Q G +L KP L + Sbjct: 61 PMDGYGLLAALRAQPGHPPVVMMTAWGTIDEAVRALQNGAVDYLVKPFAMQELLTKLQRH 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E+ P + + SP+ML L +AR VAQ++ SVL+ G+SG GKE+ A+ IH Sbjct: 121 -ERLQPGAELEP----LAHSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHRE 175 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R +PF+A+NC A+PE LLE+ LFGH +GAFTGA + G F+ A+GGTL LDE+ +M Sbjct: 176 SNRAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTEM 235 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 PLQ KLLRVLQER++ +G R I ++VR+I+ ++RDL +A++ G+FREDLYYRL V+ Sbjct: 236 ALPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQVI 295 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 L +P L +R EDI LA LL + ER ++ +A L++ WPGNVR+L N + Sbjct: 296 PLCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSYPWPGNVRELDNAL 355 Query: 361 EQCVALTSSPVISDALVEQALEG-------ENTALPTFVEARNQFELNYLRKLLQITKGN 413 ++ ++ VI + + G E ++ P + R++ E + +L+ +G+ Sbjct: 356 QRAAIFSADTVIRSDDLGLEIRGTLDDARSEGSSRPILEDVRSRQEQETIVSVLRECRGS 415 Query: 414 VTHAARMAGRNRTEFYKLLSRH 435 AAR G + L R+ Sbjct: 416 RNEAARRLGISPRTLRHKLQRY 437 >UniRef50_B8IB91 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Proteobacteria RepID=B8IB91_METNO Length = 466 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 173/447 (38%), Positives = 246/447 (55%), Gaps = 17/447 (3%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMD-EMD 63 A +L+VDD+P L + L + G+ V A SG E L L + V+ DLRM ++D Sbjct: 2 ATVLIVDDEPALREGLAETIADLGHEPVLAASGREALARLAANPDIAAVLLDLRMPGDLD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + I+ P ++LTA+ S + + A + G F LTKPV ++ L + L Sbjct: 62 GIAVLKRIRDRPRAPPAVVLTAYASAENTIEAMRLGAFDHLTKPVGREELRALLGRMLSL 121 Query: 124 SAPATDERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 AP A +V S M R+ + L A SD +VL+ G++GTGKE+ A+A+ Sbjct: 122 RAPGEAAPAAPAAAAETCLVGSSEAMRRVQKAIGLAADSDATVLLQGETGTGKEVVARAL 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ R S PF+ +NC A+P +LLESELFGH +GAFTGA ++R G F+ A+GGTLFLDEI Sbjct: 182 HDHGRRWSAPFVPVNCAAIPAELLESELFGHVKGAFTGAAADRPGAFREAQGGTLFLDEI 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDMP +Q K+LR +Q++ V P+G R + + +R+++ATHRDLP +A G FR+DLYYRL Sbjct: 242 GDMPPAMQAKILRAIQDKVVTPVGG-RPVAVEMRVVAATHRDLPALVASGGFRQDLYYRL 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ + +P L ER DI LA H L A R + A RL+ WPGNVR+L Sbjct: 301 NVIPIVLPPLRERLADILPLAEHFLALGAGGGGVP-RRLTPQAAARLLRYDWPGNVRELR 359 Query: 358 NVIEQCVALTSSPVISDALV-------EQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 N+IE+ L VI A + E+ A + E + + LQ + Sbjct: 360 NIIERAAVLVRGEVIDAADLDLPGFDRPGGPAPEDWLSGDLPTAVARLEKAMIARALQES 419 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHEL 437 GN AA+ G R Y + R+ L Sbjct: 420 SGNRAQAAKRLGIQRQLLYAKIERYGL 446 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 154/444 (34%), Positives = 235/444 (52%), Gaps = 18/444 (4%) Query: 11 VDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAE 70 V+D + L LT + +G + + + R + DL++ DLR+ +M GM + Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 71 IQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPATD- 129 +++ P +P++ +TAHGSI AV A + G FL KP + D L +++A+ +++ + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 130 ----ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 + + + S M + A S S+ I G+SGTGKE+ A+AIH AS R Sbjct: 122 VDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGD 181 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 KPFIAINC A+P+ L+ESELFGH +GAFTGA + R+G +AA+GGTLFLDE+ +M LQ Sbjct: 182 KPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQ 241 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ L +P Sbjct: 242 TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLP 301 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L R +D+ +A LL ++ S + ++R WPGNVRQL NV+ V Sbjct: 302 PLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVV 361 Query: 366 LTSSPVISDALVEQAL----EGENTALPTFVEARNQF---------ELNYLRKLLQITKG 412 L I+ ++ L N ALP E + E + + ++ G Sbjct: 362 LNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDG 421 Query: 413 NVTHAARMAGRNRTEFYKLLSRHE 436 N+ AA + + Y+ L Sbjct: 422 NIPRAATYLDVSPSTIYRKLQTWN 445 >UniRef50_D0KVQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVQ8_HALNC Length = 459 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 164/458 (35%), Positives = 256/458 (55%), Gaps = 17/458 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ P + +DDDP +L +EG V +S L DL+ISDL+M Sbjct: 1 MTKLPL-IAFIDDDPRASELFSRYAQTEGLQVQGFQSVDAAQSWLENNTADLIISDLKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G++ A +++ +P +++T + ++ +A+ A + G F+ KP D + L Q Sbjct: 60 GMSGLEFLAWLRQRDSEVPFVLITGYSTLDNAIDALRLGANDFIKKPYDPEELVQLTHRL 119 Query: 121 LEQSAPATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 L + + EA ++ SP + + + ++V+I G+SG+GKE+ A+AI Sbjct: 120 LRRDPDPHAHNFSEAERSMLGNSPAIAGVYRVIDKIHDVRINVMIEGESGSGKELAARAI 179 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S + KP+I I+CGAL + LLE+ELFGH +GA+TGA S + GL + A GGT+FLDEI Sbjct: 180 HDRSDFSDKPYIVIDCGALTDTLLENELFGHEKGAYTGASSTKPGLLEVASGGTVFLDEI 239 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +QVKLLRV+QE+++ +G I I+VR I A++RDL + + G FR DLY+RL Sbjct: 240 GNISDAMQVKLLRVIQEQQITRVGGVTPIKIDVRFIVASNRDLAQMVTEGSFRHDLYHRL 299 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +VV L+IP L ER EDIP+L NH +R A R+ F+ D M R++ +WPGN+R+L Sbjct: 300 HVVRLRIPPLRERKEDIPILVNHFIRHFAARYNRPAERFNADCMARILEYTWPGNIRELK 359 Query: 358 NVIEQCVALTSSPVI------------SDALVEQALEGENTALPTFVEARNQFELNYLRK 405 N+I++ VAL+S I + L+ G A+ + E Y+ K Sbjct: 360 NMIKRAVALSSEAEIRLDQEAEATPPWASGLIRPQSSGGAEAIDADHPTLDVLERRYIEK 419 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA-NDF 442 LL+ GN A+ G N++ ++ + +E A DF Sbjct: 420 LLKEYDGNREKTAQTLGINKSTLWRKMQSYEQSASEDF 457 >UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM81_THASP Length = 465 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 191/458 (41%), Positives = 260/458 (56%), Gaps = 23/458 (5%) Query: 1 MSHKPA---HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDL 57 M+ +P H+L+VDD+ +LLG RL +GY + A G LR + V+L + D+ Sbjct: 1 MTDRPITDRHVLIVDDEELYRELLGGRLGRQGYRISEAGDGEGALRCIEGGGVELALIDI 60 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 +M MDG++L I+++ P V++LT HGSI A+AA + G F +LTKP L + Sbjct: 61 KMPGMDGIELLERIKQLAPRTEVVVLTGHGSIDSAIAAMKLGAFDYLTKPYQLTELDLVV 120 Query: 118 DDALEQSAPATD------------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 ALE+SA A R + +V SP LR+LEQ R A DV VL+ G+ Sbjct: 121 ARALERSALARRCDALSVEVARLRSRDDDGMVGDSPAWLRMLEQVRRAAALDVPVLLTGE 180 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SG GKE+ A A+H S R + ++ +NCG L +L+ESELFGH RGAFTGA ++REGLF+ Sbjct: 181 SGAGKEVVAAALHRWSRRAGEAYVPVNCGLLEGELVESELFGHKRGAFTGASADREGLFE 240 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A GTLFLDEIG++P Q KLLRVL + RPLG++ R+I+ATHRDL +A Sbjct: 241 LASAGTLFLDEIGELPLACQAKLLRVLDSGEFRPLGASAVRRTGARVIAATHRDLEALVA 300 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH-KPFVRAFSTDAMKRL 344 G FR DL YRL+VV + +P L ER EDIPLL HLL QA RH A++RL Sbjct: 301 AGRFRHDLLYRLDVVHIVVPPLRERREDIPLLVEHLLHQAVRRHPGTPAPRVEPQALQRL 360 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA-------RNQ 397 + +WPGNVR+L NV+E+ + I A V+ L + + + Sbjct: 361 IDYAWPGNVRELRNVVERLLVFADGDRIDAARVDALLHPGARTVASTGRTGFERIVPLAE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 E YLR ++ GNV+ AA G R+ Y+LL H Sbjct: 421 MEQAYLRWVVDKLDGNVSAAATRLGIARSTIYRLLRPH 458 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 679 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 677 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 674 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 673 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 669 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 664 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 664 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 664 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 662 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 662 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 661 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 660 0.0 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 660 0.0 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 659 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 659 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 658 0.0 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 655 0.0 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 655 0.0 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 655 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 654 0.0 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 654 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 654 0.0 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 654 0.0 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 653 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 653 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 652 0.0 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 652 0.0 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 652 0.0 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 652 0.0 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 651 0.0 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 649 0.0 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 649 0.0 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 649 0.0 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 648 0.0 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 648 0.0 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_Q6ARB9 Probable two-component system response regulator... 647 0.0 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 647 0.0 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 646 0.0 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 646 0.0 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 646 0.0 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 645 0.0 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 644 0.0 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 644 0.0 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 643 0.0 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 642 0.0 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 642 0.0 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 640 0.0 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 639 0.0 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 638 0.0 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 638 0.0 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 637 0.0 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 636 0.0 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 635 0.0 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 635 e-180 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 634 e-180 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 632 e-180 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 632 e-180 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 632 e-180 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 632 e-179 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 631 e-179 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 631 e-179 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 631 e-179 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 630 e-179 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 630 e-179 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 630 e-179 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 629 e-179 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 629 e-179 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 629 e-179 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 627 e-178 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 627 e-178 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 627 e-178 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 626 e-178 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 626 e-178 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 626 e-178 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 625 e-178 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 623 e-177 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 622 e-177 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 622 e-177 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 622 e-177 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 622 e-177 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 622 e-177 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 622 e-176 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 622 e-176 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 622 e-176 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 621 e-176 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 620 e-176 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 620 e-176 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 620 e-176 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 619 e-176 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 619 e-176 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 619 e-176 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 619 e-175 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 618 e-175 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 618 e-175 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 617 e-175 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 617 e-175 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 615 e-175 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 615 e-175 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 615 e-175 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 615 e-174 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 614 e-174 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 614 e-174 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 612 e-174 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 612 e-174 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 612 e-174 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 612 e-174 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 612 e-173 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 612 e-173 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 612 e-173 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 612 e-173 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 611 e-173 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 611 e-173 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 609 e-173 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 609 e-173 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 609 e-173 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 609 e-173 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 609 e-173 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 609 e-172 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 607 e-172 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 607 e-172 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 607 e-172 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 606 e-172 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 606 e-172 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 605 e-171 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 604 e-171 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 604 e-171 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 602 e-171 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 602 e-171 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 601 e-170 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 600 e-170 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 600 e-170 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 599 e-170 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 599 e-169 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 598 e-169 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 598 e-169 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 598 e-169 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC ... 598 e-169 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 597 e-169 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 597 e-169 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_C5V657 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 596 e-169 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 596 e-169 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 595 e-169 UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-... 595 e-168 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 595 e-168 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 594 e-168 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 594 e-168 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 594 e-168 UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 594 e-168 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 594 e-168 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 593 e-168 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 593 e-168 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_C1A568 Putative NtrC family two-component response regu... 592 e-168 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 592 e-167 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 592 e-167 UniRef50_C5CF13 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 591 e-167 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 591 e-167 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 591 e-167 UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional respo... 590 e-167 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 590 e-167 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 589 e-167 UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=... 589 e-167 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 589 e-166 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 588 e-166 Sequences not found previously or not previously below threshold: >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 679 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 186/461 (40%), Positives = 267/461 (57%), Gaps = 23/461 (4%) Query: 1 MSHKPA--HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 M+ K +LLVDDDPG+L L L+ GY TA GAE + L+++ D+V++DL Sbjct: 1 MATKKKMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLN 60 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M MDGM + +QK ++LT GSI ++V A + G F ++TKPV D L ++ Sbjct: 61 MPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVS 120 Query: 119 DALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 A++ + E V SP + R+ E VA +D +VLI G+SGT Sbjct: 121 TAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGT 180 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+AIH SPR P + INCGA+PE+LLESELFGH +GAFTGA R G F+ A Sbjct: 181 GKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVAN 240 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGT+FLDEIGDM LQVKLLRV+QE+ +GS R + +++RI++AT++DL +A+ + E Sbjct: 241 GGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKE 300 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRLNV+ +++P L +R DIPLL + + + A + V+ S AM LM Sbjct: 301 FREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHH 360 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----------FVEARNQ 397 WPGNVR+L NV+E+ + L+S I + + G ++ P F A + Sbjct: 361 WPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +E N + + L+ T AA++ NRT + + R + Sbjct: 421 YEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 173/455 (38%), Positives = 258/455 (56%), Gaps = 18/455 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + + L L GYSVVTA SG E L +N + V+ D+RM EMDG+++ Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +++ PG+PVI++TA+ + A + G F ++ KP++ D L ++ A + P Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 128 TD------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 ++ SP M + + +A SDV+VLI G+SGTGKE+ A+AIH S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR KPF+ I+C A+PE LLESELFGH +GAFTGA + + G F+ A+GGT+FLDEIGD+ Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR LQE+ +G ++VRII+AT++DL + + G FREDLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 +K+P L ER EDI LL ++ + + + V + L+ +WPGNVR+L NV E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 362 QCVALTSSPVISDALVEQAL------------EGENTALPTFVEARNQFELNYLRKLLQI 409 + V + VI+ + + L E+ + E + E + + + L+ Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 +GN T AR G +RT Y + + + K+ Sbjct: 425 YRGNKTAVARALGMSRTTLYAKMKELGIADPENKD 459 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 674 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 176/451 (39%), Positives = 259/451 (57%), Gaps = 22/451 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ + L L EGY V T+ G GL ++ +E LVI DL+M EMDG++ Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + + P +P+I++TAHG+I A+ A + G ++TKP D D L I AL + Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHL 125 Query: 127 ATD--------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + + IV S + + VA S+ +VL+ G+SGTGKEI A +IH Sbjct: 126 QEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIH 185 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R KPF+ INC ALPE LLESELFGH +GAFTGAV+ + G F+ A GTLFLDEI Sbjct: 186 QLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEIT 245 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 +MP +QVKLLRVLQE++ +G I I+VR+I+AT+RD + + +G FREDL+YRLN Sbjct: 246 EMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLN 305 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+ + +P L ERTEDIPLLA H +++ + S +AM L++ WPGN+R+L N Sbjct: 306 VLPIHLPPLRERTEDIPLLAMHFIKKFNP---SQEQRMSPEAMGLLISYEWPGNIRELQN 362 Query: 359 VIEQCVALTSSPVISDALVEQALEGENT-----------ALPTFVEARNQFELNYLRKLL 407 VIE+ + L I + + ++ + P + ++ E + K L Sbjct: 363 VIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKAL 422 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + GN T AA++ G R+ ++ L Sbjct: 423 EKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 673 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 180/448 (40%), Positives = 269/448 (60%), Gaps = 12/448 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +LL+DD+P LK+L LT EGY V TA+ G GL L D++I+DL++ Sbjct: 1 MSTKK-RILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G+ + +++ P +PV+++TA+GSI +AV A + G F++LTKPVD D L + + Sbjct: 60 DITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNV 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+S + + +V +S M L VAQ + +VL+ G++GTGK Sbjct: 120 FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH A + PF+ I+C A+PE LLESELFGH+RGAFTGA ++G + A GG Sbjct: 180 ELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ K LR LQE+++ LG R ++VRII+AT+RDL +A G++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+S++IP L ER +DIP L NH L + ++ ++ + + M+ M WP Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-TFVEARNQFELNYLRKLLQI 409 GNVR+L NVIE+ V L I+ + + L+ + P T + E + + L+ Sbjct: 360 GNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLMEMEKRLIVQTLEK 419 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHEL 437 T+ N + AAR G +R + + H L Sbjct: 420 TEQNQSAAARELGISRKQLRTKMKHHGL 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 669 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 176/461 (38%), Positives = 258/461 (55%), Gaps = 21/461 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+VDD+ + ++L +G+ A +G L + D+V+ D+RM Sbjct: 1 MTAIN-RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ E++ + PVI++TA+ + AV A + G F ++ KP D D L + A Sbjct: 60 EMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ + + R I+T SP M+ + + +A S SVLI+G+SGTGK Sbjct: 120 LQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R PFI +NC ALPE LLESELFGH +GAFTGA + R+GLF+ A G Sbjct: 180 ELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDEIG+MP LQ KLLR+LQER+ +G ++ I +++RII+AT+RDL + G FR Sbjct: 240 TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ L +P L +R EDI LLANH L++ + ++ + AM L SWP Sbjct: 300 EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGE----------NTALPTFVEARNQFEL 400 GN+R+L NVIE+ V + S P+I + + E + E Sbjct: 360 GNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEK 419 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + ++L+ +GN T A M G +R L + +D D Sbjct: 420 RIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGIDPAD 460 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 664 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 179/460 (38%), Positives = 266/460 (57%), Gaps = 22/460 (4%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDDD L ++L L EGY V+TA SG EGLR+ LV++DL+M M Sbjct: 6 KKTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGM 65 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G QL E+++ P VI++TA G++ AV A + G + F+TKP +++AL + AL+ Sbjct: 66 GGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALD 125 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + R +I+ SP M + VA +D +VLI G+SGTGKE+ Sbjct: 126 MQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKEL 185 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIHN S R + PF+AINC A+P LLESELFGH +GAFTGAV ++EG F+ AE GTL Sbjct: 186 VARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTL 245 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDE+G++P LQ KLLR LQE++V+P+G I ++VR+++AT+ DL +A+A G FRED Sbjct: 246 FLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFRED 305 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRL+V+ + +P L ER EDIPLL H A +H FS + + + WPGN Sbjct: 306 LFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGN 361 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQFELNYLR 404 VR+L N +E+ + + ++ I + + + + LP + Q E + Sbjct: 362 VRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVV 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 + L+ N + AAR R + ++ + + K+ Sbjct: 422 EALERNNWNQSSAARFLRIPRHTLIYRMEKYSITTPERKK 461 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 664 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 182/479 (37%), Positives = 276/479 (57%), Gaps = 38/479 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + +L+VDD+ L ++L +L+ +GY V TAE G EGL L +DLVI+DLRM Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DGM L + P PV++LTAHG++ +AV A + G F ++TKP D++ + + A Sbjct: 61 KVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKA 120 Query: 121 LEQSAPATDERWRE-------------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 L A+ + R+ I+ SP + L VA + +VLI+G+SG Sbjct: 121 LRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESG 180 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+A+H S R +PFI +NC A+P+ L+ESELFG+ RGAFTGAV+++ G F+ A Sbjct: 181 TGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELA 240 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGTLFLDEIG++P +QVKLLRVLQE + +G + I ++VR+++AT+RDL + +A G Sbjct: 241 SGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAG 300 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FREDL+YRLNVV + +PAL +R DIP L H + + R K + + +A++RL + Sbjct: 301 TFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASH 360 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA-----------------LPT 390 +WPGN+R+L NV+E+ + I + + + G T+ P+ Sbjct: 361 AWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPS 420 Query: 391 FVEARNQ--------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + + E + + + L+ T GNVTHAAR+ +R + L D Sbjct: 421 TPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKELNLRERD 479 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 158/458 (34%), Positives = 262/458 (57%), Gaps = 25/458 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 + +L+VDD+ G+ ++L L EG+ + A + + L+++ E D V+ D+R+ + DG Sbjct: 1 MSKVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ +++++ +PVI++TA G+ A+ A +QG +L KP++ D L A+ +++ Sbjct: 61 IEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQ 120 Query: 125 APATDERWREA-----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 ++ + +S M + + V SD++VLI G+SGTGKE+ Sbjct: 121 RLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ IH+ S R+S+PFI INC +PEQL+ESELFGH +G+FTGAVS + G F+ A G +F Sbjct: 181 ARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++P Q KLLRVLQE++ +G + I+++VRI++AT+R+L + G+FREDL Sbjct: 241 LDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVV++K+P L ER EDI LL N+ +++ A ++ + S +AM +WPGNV Sbjct: 301 YYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVE--------------QALEGENTALPTFVEARNQFE 399 R++ NV EQ V + + V+ + + + + + + E Sbjct: 361 REIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVE 420 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + K L N + A+ G NR Y + ++L Sbjct: 421 KQVILKSLNENNWNRQNTAKALGLNRRSLYAKMKEYDL 458 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 662 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 181/460 (39%), Positives = 269/460 (58%), Gaps = 27/460 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A LL+VDDD G L +L LT GY V A GAE + ++ D V+ D+RM M Sbjct: 1 MRAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMG 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM+ + I++ P +PV+I+TA+ S+ AV+A + G + +LTKP+D D + ++ AL+ Sbjct: 61 GMEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDH 120 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + I+ +SP M L +VA ++ +VL+ G+SGTGKE+ Sbjct: 121 LRLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H SPR P +A+NC AL E LLESELFGH +GAFTGA REG F AA+ G++F Sbjct: 181 AKALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +Q KLLRV+QER+++ +G +R + ++VRI++AT+RDL K + G FREDL Sbjct: 241 LDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVV++ +P L ER +DIPLLA H L + AE+++ ++ F+ AM L+ WPGNV Sbjct: 301 YYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF-----------------VEARN 396 R+L N +E+ V L+ +++ + + E A + Sbjct: 361 RELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALD 420 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 E + L+ T GN + AAR+ G R +K L ++ Sbjct: 421 DVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKKYG 460 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 177/439 (40%), Positives = 265/439 (60%), Gaps = 8/439 (1%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A++L +DD+ LK + L EGY+V T+ + EG+ VL ++ ++ D R+ MDG Sbjct: 1 MANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ- 123 + L ++ + +P ++LTA+G+I AV A + G + +L KPVD + L I +A+E+ Sbjct: 61 IDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKS 120 Query: 124 ---SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E I+ +S + + ++VA+S+ +VLI G+SGTGKE+ A+AIH Sbjct: 121 KGIQKLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKN 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R SKPFI ++C +PE LLESELFGH +GAFTGA + GL + A GT+FLDEIG++ Sbjct: 181 SLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGEL 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLR LQE++++ +GS + I ++VR+ISAT++DL KA+ G FREDLY+RLNVV Sbjct: 241 PMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVV 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + +P L ER EDIPLL NH L + ++ + + + M L+ WPGN+R+L NVI Sbjct: 301 RINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVI 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGNVTHA 417 E+ V L+ S +IS + + ++ ENT E + E + K L T N T A Sbjct: 361 ERAVVLSPSGLISIKHLPRRIQ-ENTGWTIIKENTFNLLEVEKALILKALNSTGWNQTKA 419 Query: 418 ARMAGRNRTEFYKLLSRHE 436 A + G +R + + H Sbjct: 420 AEILGISRKQLRTKMKHHG 438 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 661 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 181/461 (39%), Positives = 267/461 (57%), Gaps = 24/461 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +LL+VDD+P L LL L+ G V TA +G L+VL +E +DLVISD RM MD Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G QL EI++ P +PVI++TA+ ++ +AV + + G + ++ KP D D L + AL+ Sbjct: 61 GPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 D + A +V SP R+L+ V +S+ ++L+ G+SGTGKE+ Sbjct: 121 RDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH R KPF+A+NC A+PE LLESE+FGH +GAFTGAV++R G FQ A+ GTLF Sbjct: 181 ARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+GDMP LQ K+LR LQER + P+G R+ ++VR+I+AT+++L +A+A EFREDL Sbjct: 241 LDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV + +PAL ER EDI LLA H + FS +A++ + + +WPGN+ Sbjct: 301 YYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWPGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVE--------------QALEGENTALPTFVEARNQFE 399 R+L N +E+ + + VI + + A+ A + E Sbjct: 361 RELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALAEVE 420 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 Y+ LQ + G AA++ G + F+ L + + + Sbjct: 421 KAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVD 461 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 660 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 167/452 (36%), Positives = 250/452 (55%), Gaps = 16/452 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+VDD+ + + L LT E Y V TA +G + L + K D++I+D+RM E DG Sbjct: 3 KKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ- 123 L +I+ +PVI++TA G+ A+ A + G F ++ KP D D I A+ Q Sbjct: 63 FGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQS 122 Query: 124 -------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A I+ SP M + + VA S+ +VLI G+SGTGKE+ A+A Sbjct: 123 DTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R + PFI +NC LP+ LLESELFG+ +GAFTGA S + G F+ A GT+F DE Sbjct: 183 IHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ Q KLLR +QE++ +G + I +NVRI++AT+R L +++ GEFREDL++R Sbjct: 243 IGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV+++IP L +R EDIPLL H L + + ++ FS +A+K L+ WPGNVR+L Sbjct: 303 LNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDAL--VEQALEGENTALPTFVEAR------NQFELNYLRKLLQ 408 NV+E+ + + +I + + + T L E + E + K L+ Sbjct: 363 ENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKALE 422 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 T A++ NR Y + ++ N Sbjct: 423 ENNWCRTTVAKVLKINRRSLYAKMKELGIEEN 454 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 171/456 (37%), Positives = 266/456 (58%), Gaps = 18/456 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ + K LG L EGY V T +SG E +R+L+ + +V+ D+ + +D Sbjct: 1 MQKSILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGID 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM++ I+ + P +PV++++ HG+I AV AT+ G F F+ KP+ + + + AL+ Sbjct: 61 GMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDL 120 Query: 124 SAPATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 S + + + +SP ++ L+E +VA ++ +LI G++GTGKE+ A+A Sbjct: 121 SRLEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KP + +NC A+PE+L+ESELFGH +GAFTGA + G F A GT+FLDE Sbjct: 181 IHRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 + DM Q K+LR+LQE+K +G N+ I ++VR+++AT++DL K M G FR+DL+YR Sbjct: 241 VADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ LK+P L R EDIPLLA L A + + DA+ LM SWPGNVR+L Sbjct: 301 LNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEARNQFELNYLRK 405 N IE+ +T+S VI+ + + P +F EA+ FE Y+ + Sbjct: 361 KNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISR 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 L+ GN++ A G R+ +K + + L++ + Sbjct: 421 KLREFDGNISKTAESIGLERSNLHKKIKAYGLESKN 456 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 659 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 191/441 (43%), Positives = 274/441 (62%), Gaps = 7/441 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L+VDDD +L L GY+V A SG E L + DLV+ D+RM Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ + P +PV+I+TA S+ AV A + G +L KP+D D L + ++ + Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + E + +V +SP M +LL + +VA SD +VLI+G SGTGKE+ A+ Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + + G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV+++ P+L +R EDIPLLA H L++ A R++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV--EARNQFELNYLRKLLQITKGN 413 L N IE+ V L + IS+ + A+ + L + + E + L+ T GN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGN 420 Query: 414 VTHAARMAGRNRTEFYKLLSR 434 T AAR G R LSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 659 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 189/443 (42%), Positives = 270/443 (60%), Gaps = 9/443 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+VDDD +L L GY V A +G + L + + DLV+ D+RM Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG++ EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L + +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + + + +V SP M LL LVA SD +VLI+G+SGTGKE+ A+ Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H +S R+ +P + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ + ++VR+I+ATHRDL + ++ G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++ +P L R EDIP LA + L++ AER++ V+ F+ AM L+ +WPGN+R+ Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLLQITK 411 L N +E+ V L + IS+ + A+ G A + + E + L+ T Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALERTG 420 Query: 412 GNVTHAARMAGRNRTEFYKLLSR 434 GN T AAR G R LSR Sbjct: 421 GNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 658 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 162/460 (35%), Positives = 258/460 (56%), Gaps = 23/460 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 ++L+VDD+ + +L LT EGY V TA +GA+ L ++ ++ D ++ D++M Sbjct: 5 DEPKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPR 64 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ A + P VI+++A+G+I AV A + G + +++KP D + A+ A Sbjct: 65 MDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKAS 124 Query: 122 EQSAPATDERWREA-------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 E+ + I+ +S M + + VA D +VL+ G+SGT Sbjct: 125 ERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGT 184 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+++H SPR I +NCG +PE LLESELFGH +GAFTGA N+ GL + A Sbjct: 185 GKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAH 244 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GTLFLDEIG++PA LQVKLLR+LQ+R++RP+G++ I++RI++AT R+L +A G Sbjct: 245 KGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGV 304 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL+YRLNV+ + +P L +R EDIPLL +++ ++ + + A+ RL+ + Sbjct: 305 FREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHT 364 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP----------TFVEARNQF 398 WPGNVR+L N+IE+ V L I+ + ++ P + A+ F Sbjct: 365 WPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIF 424 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + K L T GN T +++ + + + ++ Sbjct: 425 EKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKEYGIE 464 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 655 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 161/459 (35%), Positives = 254/459 (55%), Gaps = 25/459 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L L + VVTAESG + L ++ D+VI+D++M ++ G+ Sbjct: 3 KILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGID 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + +++ P V+++TA GSI +AV A + G F++L KP D + I+ A E + Sbjct: 63 ILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSL 122 Query: 127 ATDERWREA------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + ++ I+ SP+M ++L VAQS+ SV ING+SGTGKE+ A Sbjct: 123 VQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIA 182 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 QAIH S R+ PFI +NC A+PE L+ESE FGH +GAFTGA R G F+ A GTL L Sbjct: 183 QAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLL 242 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI ++P +Q KLLR +QE++ +G ++ I ++VR+IS ++RD+ A+A REDLY Sbjct: 243 DEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLY 302 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV + +P L +R EDI LA++ L + + + FS +++K+L+ +WPGNVR Sbjct: 303 YRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALV-------------EQALEGENTALPTFVEARNQFELN 401 +L N++E+ V +T++ I+ + L + E Sbjct: 363 ELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKR 422 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + LQ N T A + G + L+ + + Sbjct: 423 LIIETLQAQHNNRTKTAEVLGISVRTLRNKLNEYNMKNE 461 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 655 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 172/450 (38%), Positives = 269/450 (59%), Gaps = 10/450 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + +L+VDD+ + + LG L +GY V G + L E+ ++I DL+M Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+Q+ +K+QP + V+I+TA+ ++ AV A + G + +L KP D + L + Sbjct: 61 GMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKI 120 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + Q + + ++++SP M + E AR A+S+ ++L+ G+SG+GK Sbjct: 121 VSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H SPR PF+A++C AL E LLESELFGH +G+FTGA+S R+G F+AA GG Sbjct: 181 EVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GD+ LQ+ LLRVL+ER+ +G N I+++VRII+AT+RDL +A G+FR Sbjct: 241 TLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + +P L ER EDIPLL + + + + K + S DAM LM WP Sbjct: 301 EDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L NV+E+ + + VI + + E + P + + + E ++ +L Sbjct: 361 GNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLASLEEVEKRHVAAVLAHA 420 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 GNV+ +AR+ G +R Y + ++ L + Sbjct: 421 NGNVSQSARILGIDRVTLYNKMRKYGLRRD 450 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 166/451 (36%), Positives = 254/451 (56%), Gaps = 18/451 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS P +L+VDD+ + + L EGY V A +GAE L + +V++D+RM Sbjct: 1 MS--PQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +MDG+ L ++ +++TA S+ AV A + G +FL KP+D D + + Sbjct: 59 QMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKV 118 Query: 121 LEQSAPATDE-----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 LE+ + + R I+ SP + + + R A + +VLI G+SGTG Sbjct: 119 LEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTG 178 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ AQA+H SPR KPFI ++C AL E LLESELFGH +G+FTGA++ +EG F+ A+G Sbjct: 179 KELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADG 238 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIG++ +QVKLLRVLQ+R+ +G + + ++VRI++ATHRDL + G F Sbjct: 239 GTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRF 298 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVVS+ +P L +R D+P L NH L + ++ + VR + ++ L++ W Sbjct: 299 REDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----FVEARNQFELNYLR 404 PGN+R+L N IE+ V L +S + L G + E + Sbjct: 359 PGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLAAIEREAIL 418 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + L++ +G+ + AA + G + + L + Sbjct: 419 RTLEMVQGSTSRAAEVLGISVRKIQYRLKEY 449 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 654 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 166/456 (36%), Positives = 259/456 (56%), Gaps = 24/456 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+++D+ + + L L + GY V TAE+G + L +L++ +++++DL + + G+ Sbjct: 16 SQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGI 75 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +++ P VI++T GS AV A ++G F ++TKP+ + L I A+E+S Sbjct: 76 EILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSR 135 Query: 126 PATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ S M + + V +D ++LI G+SGTGKE+ A+ Sbjct: 136 LVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAK 195 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH R KPF+AINCGA+P +LLESELFGH RGAFTGAV+++ G FQ A GT+FLD Sbjct: 196 AIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLD 255 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG MP LQ+KLLRVLQE++V +GS++ I ++VR+ISAT+ +L + + +G FR DLYY Sbjct: 256 EIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYY 315 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ER EDI LLA + L++ + + + AM L WPGNVR+ Sbjct: 316 RLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRE 375 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGE--------------NTALPTFVEARNQFELN 401 L NVIE+ V LT S I + + + G + E E Sbjct: 376 LENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERC 435 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 ++ + ++ G AA + RT + + R + Sbjct: 436 LIKSAMGLSGGVKARAASLLNIKRTTLVEKIKRLGI 471 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 163/450 (36%), Positives = 250/450 (55%), Gaps = 15/450 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +L DD+ ++ L GY+V SG E ++ + D+ I D+ M Sbjct: 1 MS-KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++ +++ ++P VIILT GSI +AV A + G + +LTKP L + A Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRA 119 Query: 121 LEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + + + +++ SP + + + A SDV+VLI G+SGTGK Sbjct: 120 LEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S R KPF+ +NC L E LLESELFGH +GAFTGA +R GLF+ AEGG Sbjct: 180 ELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++ Q KLLRV+Q ++R +G NR I ++ RII+ATH++LP + G FR Sbjct: 240 TLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV++L++P+L ER +D+ L H L++ + +A+ + WP Sbjct: 300 EDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--LPTFVEARNQFELNYLRKLLQ 408 GN+R+L N IE+ V L +IS + + G A ++ E N++ ++L+ Sbjct: 358 GNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEVEKNHIIQVLK 417 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + AA+ G + Y + + +D Sbjct: 418 EKNWHKPLAAKTLGISLKTLYNKMKMYNID 447 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 165/449 (36%), Positives = 249/449 (55%), Gaps = 13/449 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+VDD+ + L EGY V ES E L + + DL + D++M Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMR 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG++L ++ ++ PG+ VI++T + S+ AVA + G + ++TKP+D + + A Sbjct: 61 GTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L + + +V RS M ++ + VA +D +VLI G+SGTGKE Sbjct: 121 LAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S R P + ++CGAL E LLESELFGH +GAFTGA ++G F+ AEGGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGD+ Q LLRVLQER++ +G N+ I ++ RI++AT++DL K + G FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNV +++P L +R EDIPLL NH ++ AE+ V ++ AM L WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT----FVEARNQFELNYLRKLL 407 NVR+L N +E+ + + P + + ++ T T + E ++ +L Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHE 436 T N T AA M +R + + R+ Sbjct: 421 DETNWNQTRAAEMLDIDRVTLHHKIKRYG 449 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 250/465 (53%), Gaps = 27/465 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +L+VDD+ G+ L L EGY V AE+G EGL++ DL+ D+ + MD Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ ++ +PVI+++ HG+I AV A ++G + F+ KP+ + + + + ALE Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEY 120 Query: 124 SAPATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + + S ++ L Q VA +D VLI G++GTGKEI A Sbjct: 121 YRLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 ++IH +S R KP +A+NC A+PE+L+ESELFGH +GAFTGA + + G F+ A GTLFL Sbjct: 181 RSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI DM Q K+LR+LQE+ +G ++ + ++VR+I+AT++ L +A G FREDLY Sbjct: 241 DEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V+ L +P L +R +D+ LL + + H F+ DA L+ WPGNVR Sbjct: 301 YRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPT------------------FVEARN 396 +L N +E+ + + S ++ A++ + F AR Sbjct: 361 ELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAART 420 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 FE +L LQ GN+T A G R+ Y+ L + + + Sbjct: 421 AFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLKSYNIQTPE 465 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 653 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 188/443 (42%), Positives = 284/443 (64%), Gaps = 10/443 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDDD +L L+ L+L + GY++ T S E L + E DL++ D M E+ Sbjct: 1 MVKRILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++ PVI++TA+GS+ DAV A ++G F ++TKP++ + L ID ALE Sbjct: 61 GLEFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEV 120 Query: 124 SAPATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 S + ++ I+ SP M ++LE A+ +A D +VLI G+SGTGKE+ A IH Sbjct: 121 SDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIH 180 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R +PFIAINCGA+P +LLESELFG+ +GAFTGA ++++GL + AEGGTLFLDEIG Sbjct: 181 KNSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIG 240 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++P LQVKLLRVLQE +++P+GSNR I+VR I+AT+RDL K + G+FREDLYYR+N Sbjct: 241 ELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRIN 300 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V+ + IP L ER EDI LA + + + R+ + S A ++L+ + GNVR+L N Sbjct: 301 VIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELEN 360 Query: 359 VIEQCVALTSSPVISDALVEQALEGE---NTALPTFVEARNQFELNYLRKLLQITKGNVT 415 +IE+ V T I+ + + + L F EA+ +FE +YL+ LL+ T N++ Sbjct: 361 IIERAVLTTEGEEIT--DIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNIS 418 Query: 416 HAARMAGRNRTEFYKLLSRHELD 438 A+++AG R + Y+++ R+ ++ Sbjct: 419 KASKIAGITRAQIYRMIKRYGIE 441 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 190/441 (43%), Positives = 268/441 (60%), Gaps = 7/441 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG+ EI+ + P +P++I+TA S+ AV A + G +L KP+D D L + ++ A Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 121 LEQSA-----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 L + + + ++ SP M LL + +VA SD +VLI+G SGTGKE+ A+ Sbjct: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGD+ +QV+LLR +QER+V+ +GSN+ I ++V +I+ATHRDL + ++ G FR+DLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV++++P+L +R EDIPLLA+H LR+ AER++ V+ F+ AM L+ WPGN+R+ Sbjct: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE--ARNQFELNYLRKLLQITKGN 413 L N IE+ V L + IS+ + A+ E E + L+ T GN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGN 420 Query: 414 VTHAARMAGRNRTEFYKLLSR 434 T AAR G R LSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 172/461 (37%), Positives = 263/461 (57%), Gaps = 27/461 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L++DD+ L K+L L +G+ V AE+G +GL ++ D+V++DL M ++ G Sbjct: 1 MAKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE-- 122 M++ I+ P +PVII+TAHG++ AV A + G F ++TKP D+ L + A + Sbjct: 61 MEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTN 120 Query: 123 ---QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + + D + R AI+ S + + + VA + +VLI G+SGTGKE+ A A+H Sbjct: 121 ESARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHG 180 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 AS R KPFI INC A+P LLESELFG+ RGAFTGAV+++ G F+ A+ GTLFLDEIG+ Sbjct: 181 ASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGE 240 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLLR +QE + +G + ++VR+++AT+RDL + G FR+DLYYRL V Sbjct: 241 IPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAV 300 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V + +PAL ER D+P+LA H + + R + + DAM L +WPGN+R+L N+ Sbjct: 301 VPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENL 360 Query: 360 IEQCVALTSSPVISDALVEQALEG--------------ENTALPTFVEAR--------NQ 397 IE+ + P+I+ + + + + +PT + Sbjct: 361 IERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + + K L+ T GNVT AAR+ +R + L Sbjct: 421 LERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMKEFGLR 461 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 163/454 (35%), Positives = 250/454 (55%), Gaps = 17/454 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +++V+DDP + + L + GY + + GA+ L +L+ E D+ I DL++ +D Sbjct: 1 MKEKIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I+ + P VII+TA + AV A + G F ++ KP + L I+ L+ Sbjct: 61 GLTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKF 120 Query: 124 SAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + ++ E IV+ S +M + ++ VA++DV VLI G+SGTGKE+ Sbjct: 121 RTLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELI 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A AI S R KP+I INC A+PE L ESELFG+ +GAFTGA ++G F+ A GGT+F Sbjct: 181 ANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 DEIGDMP LQ KLLRV+++ V LG I INVR I AT ++L + + +FREDL Sbjct: 241 FDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YR+NV+ + IP L ER EDIP+L L+ +E++ S A + L++ +PGNV Sbjct: 301 FYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-------TFVEARNQFELNYLRKL 406 R+L + IE+ + L+ VI + + ++ + E FE N + K Sbjct: 361 RELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKA 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 LQ T AA+ G +R ++ + + ++ N Sbjct: 421 LQECGWKKTEAAKKLGISRKALWEKIKFYGIEPN 454 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA Sbjct: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM Sbjct: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV Sbjct: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI Sbjct: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM Sbjct: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELDANDFKE Sbjct: 421 AGRNRTEFYKLLSRHELDANDFKE 444 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 168/463 (36%), Positives = 257/463 (55%), Gaps = 26/463 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+ DD+ L +L L GY V T ++G E L + D+ I D+RM Sbjct: 11 MTES-VRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMP 69 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DG+Q F EI K++P +P+I++TA GS AV A + G + ++ KP + D + + A Sbjct: 70 EVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRA 129 Query: 121 LEQSAPATDERWREA--------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 + + + IV S + + + VA S +VL+ G+S Sbjct: 130 IRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGES 189 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 GTGK + A+AIH AS R KPFI +NCG++PE LLESE+FGH +GAFT A + G F+ Sbjct: 190 GTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFEL 249 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 AEGGTLFLDEI +M LQVKLLRVLQE++ +G + NVRII+AT+RDL K ++ Sbjct: 250 AEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISE 309 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 FR+DLYYRLNVVS+ +P L ER EDI LLA++ L++ + F+ + + Sbjct: 310 KSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRN 369 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEAR 395 SWPGN+R+L N +E + ++++ VI + +++ E+ E Sbjct: 370 YSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLREVL 429 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + E ++ + ++ T GN T AA++ +R ++ + +D Sbjct: 430 LEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNID 472 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 169/463 (36%), Positives = 254/463 (54%), Gaps = 25/463 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +L+VDD+ +++ L + Y+V +A G E L+ ++ D++I D+ M +MD Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ +++ P + VI++T I AV A + G F +L+KP D D L ++ ALE+ Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALER 120 Query: 124 SAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + R E I+ SP M + A ++ +VLI G+SGTGKE+ Sbjct: 121 RQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMI 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH S R +PF+ ++C L E LLESELFGH +G+FTGAV+N+ G+F A GTLF Sbjct: 181 ARAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE G++P Q KLLRV+QER+ RP+G+ + NVR+I+AT++DL +A G FREDL Sbjct: 241 LDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NV + PAL ER +DIP LA H L+ V S AM LM WPGNV Sbjct: 301 YYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA---------------RNQF 398 R+L N +++ V L+S +I A + ++ + Sbjct: 361 RELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEV 420 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 E ++++ L+ NVT +A G RT F L+ ++ + D Sbjct: 421 EKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKKYNIRVRD 463 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 649 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 167/452 (36%), Positives = 254/452 (56%), Gaps = 19/452 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ H+L+ DDDP + +L L EGY V A G + + + + DL++ D+RM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG+++ +++ +P+I++TA G+ + A Q G + ++TKP D D + + I+ Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 121 LEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 EQ +T R R I+ SP+M + + LVA SD +VLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH S + P + +NC ALPE LLESELFGH +G+FTGA R+G F+ A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG+M Q KLLRVLQER+ +G + I ++ R+I+AT++ L + +A G+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + +P L ER EDIPLL ++ L++ + S +A+K LM WP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALV---------EQALEGENTALPTFVEARNQFELN 401 GNVR+L N IE+ V L VI+ + L + EA E Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + + L+ KG+ AA + + +E + L Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 173/457 (37%), Positives = 260/457 (56%), Gaps = 21/457 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K AH+L++DD+ L +L L EGY+V L L+ +VD+V++D++M Sbjct: 1 MSEK-AHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G Q+ ++K P +PV+I+TA GSI AV + G F ++TKP D L +I +A Sbjct: 60 KVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E + R + IV RS + +L A S +VLI G+SGTGK Sbjct: 120 VELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH SPR PF+++NC AL +LESELFGH +G+FTGAV+ R G F+ A+GG Sbjct: 180 ELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEI ++ LQVKLLRVLQER+ +G +I++++R+++AT++DL + +G FR Sbjct: 240 TLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DLYYRLNVV + +P L ER EDIPLL H + + + + FST+A+ L WP Sbjct: 300 DDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT----------FVEARNQFEL 400 GN+RQL NV+E C+ L VI+ + + E + + + + E Sbjct: 360 GNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEA 419 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 +R+ L AA G +++ L ++ + Sbjct: 420 ALIRRALVRADLVQVKAAEYLGISKSLLQYKLKKYAI 456 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 170/453 (37%), Positives = 270/453 (59%), Gaps = 21/453 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ LL L EGY +TA SG E +++L VDLV++D++M MDGM+ Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGME 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I+ P +PV+++TA+G++ +AA ++G +S++ KP + L + AL Sbjct: 63 LMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRV 122 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R + I+ +SP M+ + + VA ++ +VLI G+SGTGKE+ A++ Sbjct: 123 VQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKS 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R P++A+NC AL E +LESELFGH +GAFTGA + ++G F+ A+GGTLFLDE Sbjct: 183 IHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++ + LQVKLLRVLQE+ +G + I++++R+I+AT+RDL K + FREDL+YR Sbjct: 243 IGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAE--RHKPFVRAFSTDAMKRLMTASWPGNVR 354 LNV+ +++P L ER +DIPLL +H L++ A + VR D + +WPGNVR Sbjct: 303 LNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTAL---------PTFVEARNQFELNYLRK 405 +L NVIE+ + L +S IS + + L + T E + E +++ Sbjct: 363 ELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKR 422 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + ++ +HAA++ G ++ + + + LD Sbjct: 423 AMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 648 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 172/449 (38%), Positives = 256/449 (57%), Gaps = 13/449 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L VDD+ + L L++ G+ V A G + LR N + D+V+SDL M E DG Sbjct: 3 SARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L +++ P PV+ LT G+I AV + ++G + F+ KP+D L ID ALE+ Sbjct: 63 LWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKK 122 Query: 125 APATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + ++ +S M +++E VA S SV I+G+SGTGKE+ ++ Sbjct: 123 ETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSR 182 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+HN S R KPFIAINC ++P L+ESELFGH RGAFTGA R G+F+ A GGTLFLD Sbjct: 183 AVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLD 242 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+G++P LQ KLLRVL+E K+R LG +I+++VR++ AT+RDL + + G FREDLY+ Sbjct: 243 ELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYF 302 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV + +P L ER +D+P+L H + + V +AM+ L WPGN+R+ Sbjct: 303 RLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRE 362 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV----EARNQFELNYLRKLLQITK 411 L N +E+ V L +I+ + + G++ TF + + E Y+ LQ Sbjct: 363 LRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQRNG 422 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N A + G + Y L+R+ +A Sbjct: 423 NNKARTAEVLGVSEKTLYNKLNRYAAEAR 451 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 648 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 172/454 (37%), Positives = 248/454 (54%), Gaps = 21/454 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 AH+L+VDD+ +LG L S G+ V A++ L +L+ E++DL+ISDL+M M G Sbjct: 1 MAHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + + +P I+LTA+ ++ A+ A + G F +L KP D + + +D AL+ S Sbjct: 61 IDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYS 120 Query: 125 APATDE---------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + +V SP M L Q VA + S+LI G+SGTGKE+ AQ Sbjct: 121 KLQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQ 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR++K ++INC A E LLESELFGH RGAFTGA+ ++GL + ++GGTLFLD Sbjct: 181 ALHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+ P LQ KLLRVLQE+ R +G +I ++RII+ATHR+L + + G FREDLYY Sbjct: 241 EIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVVSL +P L R EDIPLL+ L + + + S+ A L WPGNVR+ Sbjct: 301 RLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTA------------LPTFVEARNQFELNYL 403 L N++E+ + P + + Q + E E + Sbjct: 361 LQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLI 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + L +G AA + G +R+ L ++ L Sbjct: 421 QAALIDARGVQAKAAELLGISRSNLQYKLKKYHL 454 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 171/461 (37%), Positives = 262/461 (56%), Gaps = 22/461 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + K +L+ +DD L L +EGY + ++G + + +K +LVI+DL+M Sbjct: 11 TMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPN 70 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 DG++L ++ + P VI++T +G++ AV A + G F +++KP+ D + ++ AL Sbjct: 71 GDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRAL 130 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 ++ + ++ S M + + VA+SD +V+I G+SGTGKE Sbjct: 131 SYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKE 190 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH S RN+ P I +NCGA+PE LLESELFGH +GAFTGA+ NR G F+ A+GG+ Sbjct: 191 LVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGS 250 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIGDM LQVK+LRV+QE++ +G + I+ +VRII+ATH++L A+ FRE Sbjct: 251 IFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFRE 310 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YR+NV+ + +PAL ER DI +LANH L++ A+ K V F+ +A+ ++ WPG Sbjct: 311 DLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPG 370 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA------------RNQFE 399 NVR+L N+IE V + I + + +F E QFE Sbjct: 371 NVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQFE 430 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N L K L T G AA++ NRT + L R + + Sbjct: 431 KNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKRLNISSE 471 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 161/455 (35%), Positives = 254/455 (55%), Gaps = 24/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + + L + L +GY V G + + L + DL+ISD++M +DG Sbjct: 29 RILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFG 88 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ +I++TA + AV A ++G + ++TKP + + +++ALE+ Sbjct: 89 LLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDL 148 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + I+ +S +M + + V+ S V+VLI G+SGTGKE+ A+A Sbjct: 149 RRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARA 208 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R+ +PF+AI CGA+PE LLESELFGH +GAFTGAV ++GLF+ A+GGTLFLDE Sbjct: 209 IHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDE 268 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++P +QVKLLRV+QE + R +G RD+ ++VR+++AT++DL +A+ +FREDLYYR Sbjct: 269 IAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYR 328 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + +P L +R EDIPLL +H L++ M+R + WPGN+R+L Sbjct: 329 LNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDYHWPGNIREL 385 Query: 357 VNVIEQCVALTSSPVISDALVEQ-----------ALEGENTALPTFVEARNQFELNYLRK 405 N +E+CV L I++ + L + E + L K Sbjct: 386 ENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLK 445 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 L T G AA + L++ ++A Sbjct: 446 ALDRTGGVRKRAAELLHITFRSIRYRLAKFGIEAE 480 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 162/454 (35%), Positives = 249/454 (54%), Gaps = 15/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L++DDD + +LL L S G++ G E ++L +++++DL+M Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 G+++ + P V+++T HG++ AV A ++G + ++ KP + D L + A Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 121 LEQSAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + R + +V SP + +L E VA +VLING++GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ IH S R+ +PF+AINCGALPE LLESELFGH +GAFTGA ++ GLF+ + GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI M QVKLLRVLQE +G + +VR+I+A+ R L + +A G FR Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNVVSL++P L +R EDIPLLA+H L + ++ V+ + RL+ SWPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQ-ALEGENTALPTFVE-----ARNQFELNYLRK 405 NVR+L N +E+ + + + GE L T + E + K Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLIIK 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 LQ G+ A + G + ++ + ++E++ Sbjct: 421 ALQRANGHRGKTAELLGISPASLWRKIKKYEINT 454 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 175/443 (39%), Positives = 253/443 (57%), Gaps = 9/443 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +LLVDDD G +L + L GY V+TA G E L L + K+DL++ D++M +DG Sbjct: 1 MKKILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + + + + +PVI++TA S+ +A+ A ++G F ++TKPVD D L+ AI AL Q Sbjct: 61 LATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQK 120 Query: 125 --------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + I+ S M L Q L+A SD ++L++G+SGTGKE+ A A Sbjct: 121 ISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R I INC AL E LLESELFGH GAFTGA ++GLF+ A+ GTLFLDE Sbjct: 181 IHRHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM QVK+LRVLQE + +G N I +NVRII+A+HR+L K + G FR+DL++R Sbjct: 241 IGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+VV L +PAL ER DIP+LAN L ++++ ++ FS +A+ LM WPGN+R+L Sbjct: 301 LSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQA-LEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 N IE+ V L I+ + + + + E +++ L + N + Sbjct: 361 ENSIERGVILCLGEQITAHELPPQFFRNRSPGELSSRDTLRDVEKRAIQQALARSGFNKS 420 Query: 416 HAARMAGRNRTEFYKLLSRHELD 438 A+ G R + + L+ Sbjct: 421 ATAKQLGIARQTLLNKIRDYGLE 443 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 180/452 (39%), Positives = 267/452 (59%), Gaps = 18/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+V+D+ L +++ L+L S G+ V A S EGL++++R D+V++DL++ MD Sbjct: 1 MKKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDR--ADMVLTDLKLPNMD 58 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + + I++ +PV+++TA G++ AV A + G FL KP D L Q +D ALE Sbjct: 59 GQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEV 118 Query: 124 SAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + R + IV RSP M + V S +VL+ G+SG GK++ Sbjct: 119 RALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLI 178 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH SPR +P + INC A+PE L+ESELFG+ +GAFTGA + + G F+ A+ GT+F Sbjct: 179 ARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVF 238 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGD+PA +QVKLLRVLQER+ LGSN I+VR+++AT++DL A+ +G FREDL Sbjct: 239 LDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDL 298 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVV L IP L ER DIP LANH + + A V + + M++LM WPGNV Sbjct: 299 YYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNV 358 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP------TFVEARNQFELNYLRKLL 407 R+L NVIE+ + + + + ++ A + +Q+E +R+ L Sbjct: 359 RELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREAL 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + GN + AAR+ G R L++ L++ Sbjct: 419 RRADGNKSQAARLLGLTRNALRYRLTQMGLES 450 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 646 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 172/491 (35%), Positives = 253/491 (51%), Gaps = 53/491 (10%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +L++DD+ G+ L L EG+ V+ A SG +GL +L RE DLV D+ M MD Sbjct: 1 MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + ++ +P +PVI+++ HG+I AV A ++G F+ KP+ + + A ALE Sbjct: 61 GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEY 120 Query: 124 SAPATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + RSP+M L Q VA +D VLI G++GTGKE+ A Sbjct: 121 GDLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R +P +A+NC A+PE+L+ESELFGH +GAFTGA S + G F+ A GTLFL Sbjct: 181 RAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM Q K+LR+LQE++ +G +R + ++VR+I+AT+++L +A G FREDLY Sbjct: 241 DEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V L +P L ER D+PLL + ++ A + F+ DA + L WPGNVR Sbjct: 301 YRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGEN----------------------------- 385 +L N +E+ + L + ++ +++ + Sbjct: 361 ELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQG 420 Query: 386 ---------------TALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 AR FE YL L GNVT A G R+ Y+ Sbjct: 421 GDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYR 480 Query: 431 LLSRHELDAND 441 L + + D Sbjct: 481 KLKGYNIQTTD 491 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 168/454 (37%), Positives = 246/454 (54%), Gaps = 16/454 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ +L+ L L EGY + A SG E L L R+ DL++ D+ M MD Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + EI+K +PVII++ HG+I AV AT+ G F F+ KP+ + + +I +AL+ Sbjct: 61 GLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDF 120 Query: 124 SAPATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + RS + L EQ R A ++ +VLI G++GTGKE+ A+ Sbjct: 121 HRLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARM 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R+ +P + +NC A+PE L+ESELFGH +GAFTGA R G F A GGTLFLDE Sbjct: 181 IHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM Q K+LR+LQE+ +G +R I ++VR+++AT++D+ + + G FR+DLYYR Sbjct: 241 IGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ + +P L +R +DIPLL L A + L SWPGN+R+L Sbjct: 301 LNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP---------TFVEARNQFELNYLRKLL 407 N IE+ V +T I + P T EAR+ FE YL + L Sbjct: 361 RNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 NV+ A G R+ ++ + + + Sbjct: 421 DEFAWNVSLTAAQVGLERSHLHRKMKALGIRERE 454 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 177/451 (39%), Positives = 259/451 (57%), Gaps = 13/451 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDD + + L G+ V AE GA + + E D+V++DLRM + Sbjct: 26 PTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTV 85 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DGM++ +Q+ P VI++TA+G+I AV A ++G + FL KP + + + ALE Sbjct: 86 DGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALE 145 Query: 123 QSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + E IV RSP M +L++ VA +D +VL+ G+SGTGKE+ Sbjct: 146 KRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKEL 205 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H S R+ KPF+ +NC A+ + LLESELFGHARGAFTGA R G+F+ A GGTL Sbjct: 206 VARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTL 265 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DEIG+ Q KLLR LQE ++R +G + + +NVRII+AT++DL +A+A FRED Sbjct: 266 FIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFRED 325 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNVV L+IP L ER ED+PLLA H L++ +R R + +A+ L+ WPGN Sbjct: 326 LFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPGN 384 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--TFVEARNQFELNYLRKLLQIT 410 VR+L N+IEQ AL + I A V+ T +A E + L Sbjct: 385 VRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALARC 444 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 ++ AR G + T ++ + R ++A + Sbjct: 445 GNDLGRVARDLGISGTTLWRKMKRLGIEARE 475 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 645 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 167/478 (34%), Positives = 258/478 (53%), Gaps = 42/478 (8%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+ DD+ + +L L +G++V A+ G + L ++ DL I D++M Sbjct: 1 MTLT--RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+ L I++++ + V+I+TA S+ +AV A ++G + ++TKP D D + ++ Sbjct: 59 GMSGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKV 118 Query: 121 -----------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 L + + + I+ S M + + VA SD+++LI G+SGTG Sbjct: 119 GRAREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTG 178 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH S R KPF+AINC A+P LLESELFG RGAFTGA ++G F+ A Sbjct: 179 KEMVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQ 238 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT+FLDEIGDMP LQ K+LRVLQE +V +G + I +NVRI++AT+++L + + + EF Sbjct: 239 GTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREF 298 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVV + + L ER +DIP L + L + + + +AM L SW Sbjct: 299 REDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA--------------- 394 PGNVR+L N I++ V L++ P++++A + T +A Sbjct: 359 PGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLT 418 Query: 395 --------------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E +R +L+ T+ N AA + G NR K + E++ Sbjct: 419 GIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKIHDLEIE 476 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 644 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 168/458 (36%), Positives = 272/458 (59%), Gaps = 21/458 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNR-EKVDLVISDLRMDEM 62 K +L+V+D + + L + EGY V SG ++ L+ DLV++DL+M ++ Sbjct: 3 KNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKV 62 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G+++ ++ P VI++TA+G+I AV A ++G + ++TKP + + +ALE Sbjct: 63 NGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALE 122 Query: 123 QSAPA----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + ++ E I+ S +M+ +L+ V++++ +VLI G+SGTGKE+ Sbjct: 123 KKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKEL 182 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH PR+ PF+ INCGALPE L ESELFGHA+G+FTGAV + GLF A GT+ Sbjct: 183 IARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTI 242 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+ A QVKLLR LQ+ ++R +G N+ I ++VRII+AT+ +L +A+ +G FR+D Sbjct: 243 FLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKD 302 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YR+NV+ + +P L ER EDIPLL N+ L ++ K R FS AM L+ WPGN Sbjct: 303 LFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGN 362 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEG----------ENTALPTFVEARNQFELNY 402 +R+L N++E+ VAL+ + VI + G + T + VE ++ E N Sbjct: 363 IRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKNA 422 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + + GN T +++ G + T ++ + ++++ Sbjct: 423 IVEAMNKYGGNQTKVSQVLGISTTTLWRKIKKYKIKPQ 460 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 157/453 (34%), Positives = 256/453 (56%), Gaps = 17/453 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+++D+ + L L + GY+V AE G EG+ ++ +++ D+V++D+R+ DG Sbjct: 1 MKKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL--- 121 +++ ++K QP V+++T + + AV A + G F ++ KP + L ++ L Sbjct: 61 LEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQT 120 Query: 122 -------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + E IV+ SP ML + ++ A++D SV+I G+SGTGKE+ A Sbjct: 121 AHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 A+HN SPR KPFI +NC A+PE LLE+E+ G+ +GAFTGA+ ++G + A+GGT F Sbjct: 181 NAVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFF 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM PLQ KLLRVL+ R +G + +++R I AT R LP + +G+FREDLY Sbjct: 241 DEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YR+NV+ + +P L ER +DIPLL + + + V + +AM+ L + +PGNVR Sbjct: 301 YRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVE-------QALEGENTALPTFVEARNQFELNYLRKLL 407 +L + +E V S VI+ + + AL+G +R + E + +L Sbjct: 361 ELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + T G AA+ G +R ++ L + +D + Sbjct: 421 KKTGGRKMAAAKALGISRETLWRKLKEYNVDTD 453 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 164/454 (36%), Positives = 254/454 (55%), Gaps = 21/454 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +++VDDD + L L GY V +G + + + +E D++ D++M Sbjct: 1 MSVE--KIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDGM+ +++ + VI++TA+G+I AV A ++G + ++ KP D + I Sbjct: 59 GMDGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRV 118 Query: 121 LEQSAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ + ++ E + +++ M ++ EQ + +AQS SVLI G+SGTGK Sbjct: 119 NERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH SPR KPFI +NC AL E LLESELFGH RGA+TGAV+ R G F+ A G Sbjct: 179 ELVARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDE+ ++ +Q KLLRVL+E + +G + I I+VRI++ T+RDL K + +G FR Sbjct: 239 TLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNVV + +P L ER EDIPLLAN L + + + V++ AM L +WP Sbjct: 299 EDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALV---------EQALEGENTALPTFVEARNQFELN 401 GNVR+L N++++ V + SS + E + ++ + ++ E Sbjct: 359 GNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKE 418 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + L+ T GN T AA + L+++ Sbjct: 419 LIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNKY 452 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 172/450 (38%), Positives = 256/450 (56%), Gaps = 21/450 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L++DDDP ++ ++ G+ V SG + L L LVI+DLRMD++ G Sbjct: 1 MARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + + E ++V P PVI++TA+ ++ A+ A + G + ++TKP D L I AL+ Sbjct: 61 LDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQ 120 Query: 125 APATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + R E I+ S M + VA +D ++LI G+SGTGKE+ A Sbjct: 121 SLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H S R +PF+AINC ALPE LLESELFGH +G+FTGAV ++ GLF+ AEGGT+FL Sbjct: 181 RALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+ M PLQ KLLRVLQER++R +G + + INVR+++AT+ L + G FREDLY Sbjct: 241 DEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V+ +++PAL ER +DIPLL +H L++ A + + A++ L WPGNVR Sbjct: 301 YRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------TFVEARNQFELNYL 403 +L N +E+ AL +I + + TA P T E + E Y+ Sbjct: 361 ELENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYI 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + ++ + AA+M G + Y+ L Sbjct: 421 EETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 171/459 (37%), Positives = 254/459 (55%), Gaps = 17/459 (3%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDD+ G +L L L EGY +V E L L+R + DL+++DL+M Sbjct: 5 RKSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQ 64 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G+ L + P VI++TAHGS+ AV A + G F +L KP+++D L + A E Sbjct: 65 SGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFE 124 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + R + +++ P M + +A + +VLI G+SGTGKE+ Sbjct: 125 RIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKEL 184 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+AIH S R PF+AINC A+PE L+ESELFGH +G+FTGA + G+F+AA GGT+ Sbjct: 185 VARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTV 244 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+M +Q KLLR +QE++VR +G +I ++VRIISAT+++L + + RG FRED Sbjct: 245 FLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFRED 304 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV+ + +P L ER D+ LA +++ + V S A+K LM SWPGN Sbjct: 305 LYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGE-------NTALPTFVEARNQFELNYLRK 405 VRQL +VIE+ V + S VI + + LP E N + K Sbjct: 365 VRQLESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIK 424 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 ++ + AA + G + L + ++ D ++ Sbjct: 425 AMERADWVIGKAAPLLGMSYKTLQYRLEKFAIERPDRRQ 463 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 159/448 (35%), Positives = 259/448 (57%), Gaps = 15/448 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRMDEMD 63 +L+VDDDP L ++ L S+GY+ +GA+ + ++++ +V++D M EMD Sbjct: 1 MKKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+QL ++I+++ + VI++T++G++ AV A + G ++TKP +D L I+ L+ Sbjct: 61 GIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQM 120 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ SP + ++ + V+ ++ ++LI G++GTGKE+ Sbjct: 121 QRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH S RN+ F+ ++C +L E LLESELFGH +GAFTGA +R G F+ A+ GT+F Sbjct: 181 AKAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +Q KLLRVLQ+ + +GS+ I ++VRII+AT+ DL + +G FR DL Sbjct: 241 LDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNV+ + +P L ERTEDIPLLA H L ++++ V FS D + L + +WPGN+ Sbjct: 301 FYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALE----GENTALPTFVEARNQFELNYLRKLLQI 409 R+L NVIE+ V L I+ V E + E Q E + L+ Sbjct: 361 RELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEA 420 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + A++ +R Y L+++++ Sbjct: 421 NDADKEKTAKILKISRASLYNKLNKYKI 448 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 170/447 (38%), Positives = 276/447 (61%), Gaps = 13/447 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DD+ LK L L EGY V +SG E L+++ +++ D+V++D++M+++DG Sbjct: 1 MIKVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA---- 120 ++ + + + P VI++T + ++ +AV A +QG F ++ KP D + + I +A Sbjct: 61 FEILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKV 120 Query: 121 -----LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 ++Q D + I+T++ ML+LLE AR +A +D +VLI G+SGTGKE+FA+ Sbjct: 121 KLKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 IH S R PF+A+NCGA E+LL +ELFGH +GAFTGA + ++GL + A G+LFLD Sbjct: 181 YIHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI +M +Q KLLRV+QER+ LG+ I ++VR I+AT+RD+ + + G+FREDLYY Sbjct: 241 EITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV+++IP L ER +DIPLL + ++ + K + S +A+ L+ +PGNVR+ Sbjct: 301 RLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKLLQITK 411 L N+IE+ V L +S I + Q L+ + T E + + E Y++ +L+ Sbjct: 361 LENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVG 420 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 N T AA++ G +R ++ L + ++ Sbjct: 421 NNKTVAAQILGIDRVSLWRKLKNYGIE 447 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 180/455 (39%), Positives = 261/455 (57%), Gaps = 19/455 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++L+V+D ++L L EG++V A SG E ++ + DLV+ D +M MD Sbjct: 2 KSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GMQ+ E++++ P V+I+TA+G+I AV A + G ++TKP++ D L +D E+ Sbjct: 62 GMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAER 121 Query: 124 SAPATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + AI+ S M L A VA S +VL+ G+SGTGKE+ Sbjct: 122 RTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKEL 181 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH SPR+++P I +NCGALPE L+ESELFGH +GAFTGA S R G F+ A+GGTL Sbjct: 182 LARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTL 241 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG++ P+QVKLLR LQER+ + +G N +I +VRIISAT+RDL + +FRED Sbjct: 242 FLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRED 301 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV + IP L ER EDIP L +H L + A + + S++A LM +PGN Sbjct: 302 LYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGN 361 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE---QALEGENTALPTFVE-----ARNQFELNYLR 404 VR+L N+IE+ V + + +I + L + +P E A E ++ Sbjct: 362 VRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQMIQ 421 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++ + T AA M G + L ++ L + Sbjct: 422 DAMEKAGDHQTRAAEMLGLSERMLRYKLKKYGLKS 456 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 175/445 (39%), Positives = 252/445 (56%), Gaps = 13/445 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L++DD+ + + L + L EGY V TAE G G+ + + +DL+I+DL+M M Sbjct: 1 MKFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + + V P +P+IILT HG++ +AV A +G + FLTKP+D + L + AL+ Sbjct: 61 GELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQN 120 Query: 124 SAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 R E IV SP M ++ + + A S SVLI G+SG GKE+ Sbjct: 121 RELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELI 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A AIHN SPR +KP I ++C + E +LESELFGH RGAFTGAV+ +G F+ A G++F Sbjct: 181 ANAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +Q+KLLRVLQER +G I ++VR+ISAT+R+L + + R FREDL Sbjct: 241 LDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNVV + +PAL ER ED+PLL L++ AE + + + A L WPGN+ Sbjct: 301 YYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---TFVEARNQFELNYLRKLLQIT 410 RQL N IE V ++S PVI + + + + E + + L+ Sbjct: 361 RQLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQ 420 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 KGN + A + G R Y L ++ Sbjct: 421 KGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 159/446 (35%), Positives = 247/446 (55%), Gaps = 15/446 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+VDD+ L L+ EGY + A G E L +L V++D+RM MDG Sbjct: 12 KERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDG 71 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L ++ +++TA S+ AV A + G ++L KP+D +A+ ++ ALE+ Sbjct: 72 INLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKL 131 Query: 125 APAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + IV +P + + E + A + +VLI G+SGTGKE+FA Sbjct: 132 RLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFA 191 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 QA+H SPR K FI +NC AL E LLESELFGH +GAFTGA+ +EG F+ A+GGTLFL Sbjct: 192 QALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFL 251 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+ LQ+KLLRVLQ+R+ +G + + ++VR+++AT+RDL + G FREDLY Sbjct: 252 DEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLY 311 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV++ +P L +R DIP L +H + + ++ + +R + + +++ WPGNVR Sbjct: 312 YRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVR 371 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGE-----NTALPTFVEARNQFELNYLRKLLQI 409 +L NV+E+ V L ++ + L G + E + + L++ Sbjct: 372 ELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIEREAILRTLEM 431 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRH 435 G+ + AA + G + + L + Sbjct: 432 VGGSTSRAAEILGISVRKIQYRLKEY 457 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 259/500 (51%), Gaps = 66/500 (13%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + +L L +GY V A G E L L +E++D+V++DL+M ++ G+ Sbjct: 3 KVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLG 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA- 125 L + P PVII+TAHG+I AV A ++G F ++TKP D+D L I+ A+ Sbjct: 63 LLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIK 122 Query: 126 ------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 A +E + IV S + + + VA + ++LI G++GTGKE+ A AIH Sbjct: 123 NHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHR 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR +I INCGA+ + L+E+ELFG+ +GAFTGA S + G F+ A+ GT+FLDEIG+ Sbjct: 183 GSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGE 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLL+VLQ++ +G + I ++VRII+AT+RDL K + G FREDLYYRLNV Sbjct: 243 IPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 V +K+P L ER EDI L ++ L + ++ ++ ++ +WPGN+R+L N+ Sbjct: 303 VPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENL 362 Query: 360 IEQCVALTSSPVISDALVEQALEGENTALPTFVEA----------RNQFE---------- 399 IE+ + LT IS V + ++ E + E Sbjct: 363 IERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVLMA 422 Query: 400 ---------------------------------------LNYLRKLLQITKGNVTHAARM 420 + K+L+ GN+THAA+ Sbjct: 423 RSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHAAKR 482 Query: 421 AGRNRTEFYKLLSRHELDAN 440 G +R + ++ L Sbjct: 483 LGFSRKGLQIKMVKYNLRKK 502 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 174/472 (36%), Positives = 265/472 (56%), Gaps = 29/472 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M LL++DD+P + + + L SE + V T +G L + +E DLV++DL+M Sbjct: 1 MDAVK-KLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM++ I+++QP +PVI +T + S+ AV + G ++ KP + + I A Sbjct: 60 GISGMEVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLA 119 Query: 121 LEQS----------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LEQ D + V +S M+++ + VA +D +VLI G+SGTGK Sbjct: 120 LEQRVVDLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R PF+A++C +L E LLESELFGH +G+FTGA+ + GLF+ AEGG Sbjct: 180 ELVARAIHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+ ++ Q KLLRVLQER+V P+G + IN+R+++AT+R L + +A G FR Sbjct: 240 TLFLDEVSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL++RLN++ + +P L ERT DIPLL H +R AE ++ + AM+ L + S+P Sbjct: 300 EDLFFRLNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF------------------V 392 GNVR+L N+IE+ V L +I+ +E T L + Sbjct: 360 GNVRELENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLRE 419 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 +A E ++ LQ +GN+T AA G R F ++ + + A D+ E Sbjct: 420 QAVEDIEKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKKLGISARDYVE 471 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 170/461 (36%), Positives = 257/461 (55%), Gaps = 21/461 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDD+ + L + L+ EGY V TA +G + +L + D+VI+DL+M+ DG Sbjct: 1 MARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + ++++ PVII+TA GSI AV A + G ++ KP + + + + LE Sbjct: 61 YDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHG 120 Query: 125 APATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + + + IV S M ++ + A + +++I G+SGTGK + A Sbjct: 121 SLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H SPR KPF+AINC A+PE LLESELFG+ +GAFTGA SN+ GL A+GGTLFL Sbjct: 181 EAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP +Q K+L+VL+ +V PLG + ++++RIISAT++DL + FREDLY Sbjct: 241 DEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+ +++PAL ER EDIPLLA +++ V+ F AMK +M WPGNVR Sbjct: 301 YRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENT-----------ALPTFVEARNQFELNYL 403 +L NV+E+ V I+ A + + + L +E + + Sbjct: 361 ELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDII 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 L G+ A+ G + T Y+ +S+ +D K+ Sbjct: 421 INALNRFDGSKEMVAKTLGIDLTTLYRKMSKLGIDEEALKK 461 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 637 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 162/452 (35%), Positives = 252/452 (55%), Gaps = 18/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +++ DD+P + ++ L L +GY V TA +G E + L + D+++ D +M + Sbjct: 1 MKAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLT 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +I+++ P V+ +TA GS+ AV A ++G + F+ KP D D L + A+E Sbjct: 61 GVEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEH 120 Query: 124 SAPATDERWRE--------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + + I+ + +++ Q VA++D +VLI+G+SGTGKE+ A Sbjct: 121 CRMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAW 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH+ S R S+PF+AINCGA+P L+ESELFGH +GAFT A + G F+ A GGTLFLD Sbjct: 181 AIHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++P QVKLLRVL+ERK+ +G + I +NVRI++AT+R+L + + G+FR DL Y Sbjct: 241 EIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV ++++P L ER EDIPLLA LR+ + + + +AM +L WPGNVR Sbjct: 301 RLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRD 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQAL----------EGENTALPTFVEARNQFELNYLRK 405 L N ++ + L I + + E + + + E + Sbjct: 361 LENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILS 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 LQ N T A +R + + R+ L Sbjct: 421 ALQKHNYNRTLTAEALNISRKTLFNKMKRYNL 452 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 178/483 (36%), Positives = 260/483 (53%), Gaps = 47/483 (9%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + PA +L+VDD+ L L L +G+ TA +GAE L +L DLV++DL M Sbjct: 33 TPGPARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQG 92 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ L ++ P V+++T + ++ AV A G + +L KP D + + AL Sbjct: 93 MDGLDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKAL 152 Query: 122 EQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E+ + ++ +P M L VA SDV+VLI G++GTGKE Sbjct: 153 EKRRLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKE 212 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ +H S R+ F+AINCGA E+LLESELFGH +GAF+GAV R+GLF+AAEGGT Sbjct: 213 LAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGT 272 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G+M P+QVKLLR +QER +R +G DI ++VR+++AT++DL A G FR Sbjct: 273 LFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRH 332 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNVV L++P LAER ED+PLLA + +AA + + + L +PG Sbjct: 333 DLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPG 392 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALE----------------------------- 382 NVR+L N+IE+ L + VI+ A + L Sbjct: 393 NVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADE 452 Query: 383 --------GENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 GE ++ E ++ +L++ GN THAA++ +R ++ L R Sbjct: 453 AARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKR 512 Query: 435 HEL 437 + L Sbjct: 513 YGL 515 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 176/461 (38%), Positives = 255/461 (55%), Gaps = 26/461 (5%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+VDD+ + + L + L EG+ V A G L L +E DL+ISD+RM +G Sbjct: 1 MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++L + +++QP +PV+++TA S DAV A + G F +LTKP D + + AL Sbjct: 61 LELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120 Query: 125 APATD-----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ SP ML++ E R VA + +VLI+G+SGTGKE+ Sbjct: 121 RQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH SP F+ I C A+PE L ESELFGHA+GAFTGA +NR GLF+ A GT F Sbjct: 181 ARAIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ Q KLLRVLQER+++ +G + I IN R+ISAT+RDL + +A G FREDL Sbjct: 241 LDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRL VV +++P L ER D+PLL H L + + +R S+ A++ LM +PGNV Sbjct: 301 FYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT---------------FVEARNQF 398 R+L N+IE+ VA+ +S +I + A F Sbjct: 361 RELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDF 420 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 E + K LQ + T AA + + + ++E+D+ Sbjct: 421 ERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKKYEIDS 461 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 171/462 (37%), Positives = 281/462 (60%), Gaps = 24/462 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS H++++DD+P +L+ + GY T E E L + R + DL+I+D++M Sbjct: 1 MSEDR-HIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + DG ++ + + P VI++T + S+ AV A ++G + +L+KP + L I+ A Sbjct: 60 QCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKA 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+ A + + I+ + + E ++ SD S+LI G+SGTGK Sbjct: 120 LQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R++ PFI ++C +LPE LLESELFG+ RGAFTGA + ++GL + A GG Sbjct: 180 EVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+G++ +Q KLLR L+ER +R +G NR I+I++R+++AT+RDL KA+ EFR Sbjct: 240 TLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYR+NV++LK+P L ER +DIPLL NH ++ ++ V F+ +AM+ + + +WP Sbjct: 300 EDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA-------------RNQ 397 GN+R+L NV+E+ ++L+ S ++ + + + + G + E + Sbjct: 360 GNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDICLKR 419 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 FE+ YL++LL GN+T AA+ AG +R ++L+++++L Sbjct: 420 FEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQR 461 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 175/474 (36%), Positives = 258/474 (54%), Gaps = 33/474 (6%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L++DD+P + + L +EGY V A +G +G++ + + DLVI+DLRM D Sbjct: 1 MTRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+Q+ ++ VI++TAHGS+ AV A + G ++TKP D L +D A + Sbjct: 61 GLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKV 120 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + +V ++ M ++LE+ +LVA +D +VLI G+SGTGKE+ Sbjct: 121 QALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVI 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A AIH SPR + I ++C ALPE LLE+ELFGH RGAFTGA+ R G F+ A GTLF Sbjct: 181 ANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +QVKLLRVLQE++ +G I +VR++ AT ++L + + G FREDL Sbjct: 241 LDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV + +P L ER EDI +LA HLL+++ R + ++ FS A L+ S+PGNV Sbjct: 301 FYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNV 360 Query: 354 RQLVNVIEQCVALT-SSPVISDALV-----------EQALE-----------GENTALPT 390 R+L N IE+ VAL I + T Sbjct: 361 RELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGT 420 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 E R + E Y+ +L+ + T A++ G +R ++ R+ L D E Sbjct: 421 LAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKRYGLATPDTDE 474 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 165/440 (37%), Positives = 254/440 (57%), Gaps = 8/440 (1%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 +++ +L+ DD+P + +L+ L+ + VVTA G E L+V + VD + D+RM + Sbjct: 15 TNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG+ + ++ V +PVI++TA+G+ + A ++G + F+TKP D D L + + AL Sbjct: 75 VDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 EQSAPAT------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + S + +V S M + + VA +DV+VLI G+SGTGKE+ ++ Sbjct: 133 DYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSR 192 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH SPRN PF+ +NC A+PE LLESELFG+ +GAFTGA + G F+ A GT+ LD Sbjct: 193 AIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLD 252 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDM LQ K+LRVLQE + +G R I ++VR+++AT++DL + G FREDLY+ Sbjct: 253 EIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYF 312 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV +++P L ER EDIPLLA+H +++ A V + + M LM +PGNVR+ Sbjct: 313 RLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRE 372 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 L N+I + VAL S V++ ++ + AL E + E R+ + + + Sbjct: 373 LENIIARAVALCSGKVLTLDVLPPQVVEPKPALRPLKEVLLEAERRAFRQAVAVAGLDPQ 432 Query: 416 HAARMAGRNRTEFYKLLSRH 435 A + + K L Sbjct: 433 AVADLLQVDLDYAKKRLKEW 452 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 158/442 (35%), Positives = 250/442 (56%), Gaps = 12/442 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDD + +L+ L SEG + V GAE ++ R+ DL+I+DL M ++DGM+L Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMEL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + P V+++T +GSI AV A + G + +L KP + D L + AL + Sbjct: 66 LNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRLQ 125 Query: 128 TDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + R ++ S M L +A D +VLI G++GTGKE+ A+ IH Sbjct: 126 DENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIH 185 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R + F+ INCGALPE LLESELFGHARGAFTGA +++GL ++A+ GTLFLDEI Sbjct: 186 RLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEIN 245 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 QVKLLRVLQE +G + +++R+I+A++ L K + G FR DL+YRLN Sbjct: 246 TTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLN 305 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 VV++ +P L ER DI LLA++ L + A ++ + + S +A++ L WPGNVR+L N Sbjct: 306 VVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELEN 365 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEAR---NQFELNYLRKLLQITKGNVT 415 +IE+ V + + + + + + + + E ++ ++L+ T G+ Sbjct: 366 IIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGHRG 425 Query: 416 HAARMAGRNRTEFYKLLSRHEL 437 A+++ G + ++ + ++ L Sbjct: 426 KASKLLGISLASLWRKVKQYGL 447 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 162/476 (34%), Positives = 258/476 (54%), Gaps = 42/476 (8%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 K +L+VDDD GL+ L + + Y V++ SG L + RE DL++ D +M Sbjct: 2 RKMDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGK 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G++ EI+++Q P+I++TA+G++ A+ A + G + +L KP D++ L + DALE Sbjct: 62 NGLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALE 121 Query: 123 QSAPATDERWREA--------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 + + A I+ M + + VA DV+VLI G+SGT Sbjct: 122 VNRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGT 181 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+++ S R +KPF+ +NC A+PE L ESELFG+ RGAFTGA G F+ Sbjct: 182 GKELVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCH 241 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGTLF DEI +MP Q KLLR LQ ++ +G+ + + ++VR++ AT+++L +A+ +G Sbjct: 242 GGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGR 301 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLY+RL ++S+ +P L ER EDIP L ++ L + E +K +R A+ +L + + Sbjct: 302 FREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHA 361 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF----------------- 391 WPGNVR+L N + + V L+S VI + + G + P + Sbjct: 362 WPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPWARVERKLEELIP 421 Query: 392 ------VEARNQ-----FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 EA ++ E L K+L+ N AAR+ G +R + + + Sbjct: 422 DLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKKFD 477 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 632 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 185/454 (40%), Positives = 267/454 (58%), Gaps = 18/454 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L++DD+PG+ + LG L EG+ V TA GAEG+ + + + LV D++M +D Sbjct: 1 MTRRILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ +++ P V++++ H +I AV ATQ G + L KP+D D + + +A Sbjct: 61 GLEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTN 120 Query: 124 SAPATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + IV RS + LLE+ V + VLI G++GTGKE+ A+A Sbjct: 121 RQLTEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KPFI +NC A+P +L+ESELFGH +G+FTGA+++R G F+ A GGTLFLDE Sbjct: 181 IHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDM Q K+LRVLQ+ V +G ++ + ++VR+++AT++DL + +A G FREDLYYR Sbjct: 241 IGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + +PAL ER EDIPLL H L+Q AER R+ S +A++RL WPGNVR+L Sbjct: 301 LNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP----------TFVEARNQFELNYLRKL 406 N +E+ V L S+ IS A + L G TA P TF E + E +L Sbjct: 361 RNTMERLVILASAASISVADI-DRLAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLLAK 419 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 L+ NV+ AR R+ YK + R+ L Sbjct: 420 LRAFDWNVSETARALDMPRSNLYKKIERYALTRE 453 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 174/456 (38%), Positives = 250/456 (54%), Gaps = 21/456 (4%) Query: 1 MSH--KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL-NREKVDLVISDL 57 M+ + H+L+ DDDPG+ LL EGY AE G E L + + DL+I D+ Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 RM DG+ + +++K PVI++TAHG+ A+ A Q G + ++ KP D + + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVV 120 Query: 118 DDALEQSAPATDERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 + A+ R EA ++ SP M + +Q VA +D +VLI G++GTG Sbjct: 121 KRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTG 180 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A IH S R + P + +NC ALPE LLESELFGH +GAFTGAV+ R+G F+ A Sbjct: 181 KEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHK 240 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 G++FLDEIG+M Q KLLR+LQER+ +G + ++VR+I+AT+RDL + G F Sbjct: 241 GSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTF 300 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNV++L +PAL +R DIPLLA L + S +AM+RL W Sbjct: 301 REDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDW 360 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDAL----------VEQALEGENTALPTFVEARNQFE 399 PGNVRQL + IE+ V L+ VI+ ++ + T E E Sbjct: 361 PGNVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVE 420 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 L++ L ++ AAR G + EF K ++ Sbjct: 421 RLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKKY 456 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 182/464 (39%), Positives = 257/464 (55%), Gaps = 33/464 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS ++L VDD+P +L+LL + L GY +TA G E L V+N ++VD V++DL M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+QL E++K +PVII+TA G I A+ A + G ++ +P D L AI A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LEQSAPATDERWRE-------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 L S + R+ ++ SP M L E R VA +VL+ G++GTGKE+ Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH ASPRN+ F+A+NC A+P ++LESELFGH +GAFTGAV R G F+ A+GGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDE+ +MP LQ KLLR LQE + LG NR I +++R+++AT+R+ A+ G+ REDL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV + +PAL R DI LLA H L S A++ LM WPGNV Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNV 353 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-------------------FVEA 394 R+L NV+E+ ++ + I + + N A Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNA 413 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E + K L T GN + AA++ + + LS++ + Sbjct: 414 VEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQYGIS 457 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 369/444 (83%), Positives = 404/444 (90%), Gaps = 1/444 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S A LLLVDDDP LLKLLG+RL+SEG+ V TA SG E LR+L R+ +DLVISDLRMDE Sbjct: 3 SAHSASLLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDE 62 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+ LF+EIQ+ QPG+PVIILTAHGSIPDAVAATQQGVFSFLTKPVD+DALY+AIDDAL Sbjct: 63 MDGLALFSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDAL 122 Query: 122 EQSAPAT-DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 QS P D+ WR+A VTRSPLMLRLLEQAR+VAQSDVSVLINGQSGTGKE+ A+AIH A Sbjct: 123 AQSMPQGGDDAWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARAIHRA 182 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 SPR K FIAINCGALPEQLLESELFGHA+GAFTGAVS+REGLFQAA GGTLFLDEIGDM Sbjct: 183 SPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDEIGDM 242 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQVKLLRVLQERKVRPLGSNRD+DI+VRIISATHR+LPKAM GEFREDL+YRLNVV Sbjct: 243 PLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYRLNVV 302 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 SL++PAL +R EDIPLLA HLLRQAAERHKP VR+FS+ AMK LM+ASWPGNVRQLVNVI Sbjct: 303 SLRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQLVNVI 362 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARM 420 EQCVALT++PVI +ALVEQAL+GENTALPTFVEAR+ FEL+YLRKLLQITKGNVTHAARM Sbjct: 363 EQCVALTTAPVIGEALVEQALQGENTALPTFVEARHHFELHYLRKLLQITKGNVTHAARM 422 Query: 421 AGRNRTEFYKLLSRHELDANDFKE 444 AGRNRTEFYKLLSRHELD NDFKE Sbjct: 423 AGRNRTEFYKLLSRHELDPNDFKE 446 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 182/452 (40%), Positives = 267/452 (59%), Gaps = 17/452 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ G+ +LL L G+ S AE +L E D+V++D+ M M Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I + +P +PVI++TA GS+ A +A + G + F+TKP + DAL ++ AL Sbjct: 61 GLDLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRH 120 Query: 124 SA----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A D R E I++ SP+M + + +A SD S+LI G+SGTGKE+ Sbjct: 121 RALREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+A+H S R+ F+A+NC A+P+ LLESELFGHARGAFT A R GLF A GGTLF Sbjct: 181 ARAVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++P LQ KLLR LQER VRP+G++ ++ ++VR+I+AT+RDL A+ FREDL Sbjct: 241 LDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NVV + +P L R D+ LLA H L A ++ S A ++LM +WPGNV Sbjct: 301 YYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG-------ENTALPTFVEARNQFELNYLRKL 406 R+L N IE+ VAL I+ + + + ++ PT + + E Y+ ++ Sbjct: 361 RELQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRV 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L++ GN + AA++ G +R Y+ L R+ + Sbjct: 421 LEVVGGNKSQAAQILGFDRATLYRKLERYGMR 452 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 204/451 (45%), Positives = 280/451 (62%), Gaps = 13/451 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDDD GL L+ RL GY V AE G E L E + DL+M+EMDGM Sbjct: 5 KILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMV 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE---- 122 L ++ VQP +PVIILTA+G+I AV AT++G + F+TKP + L ++ ALE Sbjct: 65 LLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVGSL 124 Query: 123 ------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + I+ S M ++L Q +A +D +V + G+SGTGKE+ A+ Sbjct: 125 RMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKV 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R+ PF+AINCGA+PE LLESELFGH +GAFTGA ++GL Q AE GTLF+DE Sbjct: 185 LHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++ LQVKLLRV Q+ + P+G + + ++ R+++AT++DL KA+ G+FREDLYYR Sbjct: 245 IAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V+ + +P L ER EDIPLLA+H L+ + FS DAM RLM WPGNVR+L Sbjct: 305 IHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDALV---EQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 NV+E+ V L I + +A+ T LP AR++FE YL ++L TKGN Sbjct: 365 ANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERAYLIQVLHSTKGN 424 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 V+ AA AGR R EFYKLL +++LD FKE Sbjct: 425 VSRAAAKAGRYRAEFYKLLRKYDLDPATFKE 455 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 163/450 (36%), Positives = 263/450 (58%), Gaps = 16/450 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 LL++DD+P ++L L+ EGY+V TA S E +++N +++++DL++ +G Sbjct: 1 MTTLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + + VI++TA G+I AV A +QG F +LTKP+DK+ L I A E+ Sbjct: 61 IEILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERM 120 Query: 125 APATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + I+ +S ML++L+ + ++ +VLI G+SGTGKE+ A Sbjct: 121 NLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH SPR KPFIAINC A+P+ L+ESELFG+ GAFTGA + + GL ++A+ GTLFL Sbjct: 181 RAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI ++P Q KLLRVLQ+++VR +GS ++VRII+AT+++L + + + +FREDLY Sbjct: 241 DEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL V++++IP L ER EDIP L + + + ++ V A++ L+ SWPGN+R Sbjct: 301 YRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENT------ALPTFVEARNQFELNYLRKLLQ 408 +L +VIE+ + + I+ ++ L +P + E ++K L Sbjct: 361 ELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKALI 420 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + AAR+ G + F+ L + L Sbjct: 421 KSNFVIAKAARLLGMSYDTFWYRLKKFGLS 450 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 171/464 (36%), Positives = 250/464 (53%), Gaps = 33/464 (7%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + +VDDD + +L L G + T E+GAE L L + D+++SD+RM MDG+ L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +I++ P +PVII+TAH + AV+A QQG F +L KP D D ++ A+ Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 128 TDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 R + I+ +P M + +++S +SVLING+SGTGKE+ A A+H S Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 PR PFIA+N A+P+ L+ESELFGH +GAFTGA + R+G F+ A+GGTLFLDEIGDMP Sbjct: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 +Q +LLRVL + + +G + ++VRII+ATH++L + + G+FREDL++RLNV+ Sbjct: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 + +P L ER EDIP LA H L+ AA + + L +WPGNVRQL N Sbjct: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 Query: 362 QCVALTSSPVISDALVEQALEGENTALPT---------------------------FVEA 394 + + + + L A T EA Sbjct: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + E L L+ T+G+ AAR+ G R + L ++ Sbjct: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 158/458 (34%), Positives = 253/458 (55%), Gaps = 22/458 (4%) Query: 1 MSHKP--AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 M+ + LL+++D+ L + L E + A + + +L E +D+V++D+R Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 + + G ++ +++ + + +TA+GS+ +AV A + G + ++ KP+D + L + Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 119 DALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 + + E I+ S M + E+ + VA S +VL+ G+SGT Sbjct: 120 RIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGT 179 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A AIH SPR + PF+ ++C AL QLLESELFGH +GAFTGA+ R G F+ A Sbjct: 180 GKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAA 239 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GTLFLDEIG++ P QVKLLR L E+ ++ +GSN+ + ++VR+I+AT+++L K + G+ Sbjct: 240 RGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGK 299 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL++RLNVV + +P L ER EDIPLLA L + A + + S +AMK L+ Sbjct: 300 FREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENT--ALPTFVEA-------RNQFE 399 WPGNVR+L IE V L I + + + + P VE+ + E Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAE 419 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + L++ +G T AA+ G +R + + + EL Sbjct: 420 KRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFEL 457 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 175/460 (38%), Positives = 269/460 (58%), Gaps = 22/460 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREK-VDLVISDLRM 59 MS + + DD+ G+LK + L S+G V T SG L L + DL++ D++M Sbjct: 6 MSET--RIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKM 63 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +MDG+Q+ E++K++PG+PV+I+TA G+I AV A + G + ++TKP K+ + +++ Sbjct: 64 PDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLEN 123 Query: 120 ALEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 LE+ + + +AIV S + E VA S+ ++LI G+SGTG Sbjct: 124 VLERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTG 183 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A AIH S R + ++INC AL + LLES+LFGH RGAFTGA +N++GL + A+ Sbjct: 184 KELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADS 243 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DEIGDM LQ KLLRV+QE P+G+ R +++R ++AT+++L K +A G F Sbjct: 244 GTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRF 303 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNV+S+ +P L ER EDI LA H LR+ +R V F+ +A+ ++ SW Sbjct: 304 REDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSW 363 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVE--------QALEGENTALPTFVE-ARNQFEL 400 PGN+R+L NV+E+ V L S V++ + A G +AL + + E Sbjct: 364 PGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVER 423 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++R+ L T + + A + G +R + ++ L Sbjct: 424 EHIRQTLARTGFHKSRTAEILGISRKTLDRKIAEFGLKPE 463 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 165/473 (34%), Positives = 260/473 (54%), Gaps = 35/473 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L + L+ GY+V TA SG+E + L+ K D+ + D+R+ + DG+ Sbjct: 5 RILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLD 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L + + + VI++TA+ + AV A + G ++ KP + +AL ID A E+ Sbjct: 65 LLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFEKRQL 124 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDV-SVLINGQSGTGKEIFAQ 175 + +V S M+ L + ++ A +D +VLI G+SGTGKE+ A+ Sbjct: 125 REKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVAR 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIHN S R PF +NC A+PE LLESELFGH +GA+T A R+G+F+ AEGGT+FLD Sbjct: 185 AIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGTVFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q K+L+V++ ++ R LG+ DI +VRII+ATH+DLP + FR DL+Y Sbjct: 245 EIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRGDLFY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+++ +P L ERT+DIP L + + + E + V S + M L WPGNVR+ Sbjct: 305 RLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGE------------------------NTALPTF 391 L N IE+ + L S +++ + ++ + + +PT Sbjct: 365 LRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHITIPTG 424 Query: 392 VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 + + E +R L+I+ GN T AA+ +R + + + + K+ Sbjct: 425 GISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKKFGMSESSQKD 477 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 629 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 162/449 (36%), Positives = 271/449 (60%), Gaps = 15/449 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+V+DD + + L L+ +GY+V + +SG + L + + + DLV+SDL++ MDG Sbjct: 3 KYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 M++ I++ + +I+TA+G++ AV+A +QG ++ KP D + L ++ LE+ Sbjct: 63 MEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKR 122 Query: 125 APATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 D E IV S M+ + + V +S +VLI G++GTGKE+ A Sbjct: 123 GLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVA 182 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R KP++ +NC AL E L+ SELFGH +GAFTGAV+++ GLF+AA+GGTLFL Sbjct: 183 RAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTLFL 242 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+ LQ LR L++ +++P+GS + ++VRII+AT+++L + +G FR+DLY Sbjct: 243 DEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLY 302 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV++ +P L +R EDI LLA H L + A ++ +R + A++ L SWPGNVR Sbjct: 303 YRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGE-----NTALPTFVEARNQFELNYLRKLLQI 409 +L N+IE+ + I+ + Q + + + ++ ++L++ Sbjct: 363 ELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVSRRHIVRILEM 422 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 T N T A+++ G +R+ +++++R +L+ Sbjct: 423 TNHNKTQASKLLGIDRSTLWRIMNRLKLN 451 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 629 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 160/449 (35%), Positives = 258/449 (57%), Gaps = 18/449 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L++DD+ + + L L EGY V TA G +GL + DLV+ D + + +G+++ Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 EI+ + VI++TA+G++ +AV A Q G +F+ KP D + L + A+ + Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 128 TDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + E I+ +S MLR+ + +A S +VL+ G+SGTGKE+ A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R + F+ IN G++P LLES LFGH +GAFT A+++++GLF+ A+GGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G M Q K+LRVLQ+RK LG ++I ++VRII+AT+ DL + + G+FREDL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+++ +P L +R D+PLL H +++ E + + + +A++ L+ +W GNVR+L Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNYLRKLLQI 409 NVIE+ V L + P I+ L+ + G ++L + E E + +L+ Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEK 441 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 N T AA + + + R ++ Sbjct: 442 VGWNQTEAAEKFRIPLSTLNQKIKRLSIE 470 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 157/466 (33%), Positives = 250/466 (53%), Gaps = 31/466 (6%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDD+ + + L ++GY + A S E L ++ DL++ DLR+ + Sbjct: 2 KPKGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNI 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G++L +I++ P ++++T +GS+ AV + G + +L KP D L ++ AL Sbjct: 62 NGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALR 121 Query: 123 QSAPATDERWREA------------IVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTG 169 + + + I+ SP M + + VA+S + VLI G+SGTG Sbjct: 122 RQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTG 181 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSN-REGLFQAAE 228 KE+ A+A+H S R S F+ INC AL E LLE+ELFG+ +GAFTGA + + GLF+ A+ Sbjct: 182 KELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIAD 241 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GT+FLDEIG+M LQ KLLR+LQER+ + +G +DI I+VRII++T+R+L + +A G Sbjct: 242 KGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGN 301 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FR+DLYYRL V+ + +P L ER EDI LL + + + + D + L+ Sbjct: 302 FRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYG 361 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------------TF 391 WPGN+R+L NV+E+ V + + +S V G+ + Sbjct: 362 WPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDGLD 421 Query: 392 VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + E ++ +L+ T T AAR+ G NRT Y + + + Sbjct: 422 ARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIKEYGI 467 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 166/454 (36%), Positives = 251/454 (55%), Gaps = 23/454 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ + + + L+ EG+ V A SG E ++ E++DL + DL + DG++ Sbjct: 3 KILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +++ P + VII+T +GS+ AV + Q G F ++ KP DAL + AL+ Sbjct: 63 VLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQTL 122 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R + I+ +S + Q R +A+ +VLI G+SGTGKE+ A+A Sbjct: 123 KREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH+ S R + FIAINC ++P LLESELFGH +GAFTGA ++GLF+ A GT+FLDE Sbjct: 183 IHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+M +QVKLLRVLQER +R +G+ +DI+I+ R+I+AT+R+L K + FREDL+YR Sbjct: 243 IGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV + IP L ER DI LA + L + R S +A + + +WPGNVR+L Sbjct: 303 LNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEG-------------ENTALPTFVEARNQFELNYL 403 NVIE+ + S P + + Q + A EA + E + + Sbjct: 363 RNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLI 422 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 ++ LQ T NV A R + ++ L Sbjct: 423 QQALQKTGWNVLQTAANLKIPRGTLRYKMEKYGL 456 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 627 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 184/453 (40%), Positives = 289/453 (63%), Gaps = 12/453 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L++DDD +L++L +RL + GYSV A+ G E VL + K++LV+ DLR+ Sbjct: 1 MSKE--KILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLS 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E +G++L +I K P +P+II+TAHGSI AV A ++G +S++ KP D L I +A Sbjct: 59 EENGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNA 118 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + + I+ ++ ML +LE V+++D +V+I G+SGTGK Sbjct: 119 LEKQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + PFIA NCGA+PE LLE+ELFGH RGA+T A ++EGLF A+ G Sbjct: 179 ELIARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 ++FLDEI + Q+KLLRVLQER+++P+GS ++ INVRII+A++ DL KA++ G FR Sbjct: 239 SIFLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DL+YR++V+ + +P L +R +DIPLLA + + + + K FS A++R++ WP Sbjct: 299 DDLFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GN+R+L N IE + + I + ++ +A+ +FE Y+ LL+ Sbjct: 359 GNIRELRNKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAKERFEREYIENLLKAN 418 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 GN+T+A++MA R R + YKL+ ++ ++ D+K Sbjct: 419 NGNITNASKMASRYRADIYKLIKKYNINPEDYK 451 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 172/474 (36%), Positives = 258/474 (54%), Gaps = 34/474 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M + A +L+VDDD L + L +EGY+V TA SG G+ + DLV+ D+RM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++ +A +++ +P +PVII+TA G+ A+ AT+ G + ++ KP D + + I+ A Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + +AI+ RS M L + A +D +VLI G+SGTGK Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A++ S R KPF+ INC A+PE LLESELFG+ +GAFTGA + G + A G Sbjct: 181 ELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGDMP +Q K+LR+LQE+ V LG + I ++VRII+AT+RDL A+ G+FR Sbjct: 241 TVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL VV++ +P L ER DIPLL + L + + S +AM L T WP Sbjct: 301 EDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVE----QALEGENTALPTFVEARNQFELN----- 401 GNVR+L N +++ + + V+ + L G A ++ ++ Sbjct: 361 GNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELASG 420 Query: 402 ---------------YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +R+ L+ T GN + AAR+ G +R + ++ L Sbjct: 421 RESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEKYGLRIE 474 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 168/452 (37%), Positives = 256/452 (56%), Gaps = 20/452 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ G+ L L G+ V A++G GL ++ DL+ D+ + +DG+ Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + + + VI++TA S+ AV + G +LTKP D L AL + A Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 127 ATDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + +V +SP ML+L + VA +D++VL+ G+SGTGKE+ A+A+H Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 R + F+ +NCGAL + LLESELFGH RGAFTGA + GLF AA+GGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLR LQ+ +++P+G ++VR+++AT+RDL +A+A+G FREDL+YRLNV+ Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 ++++PAL ER ED+P+LA H AA R + S A++ L WPGNVRQL N I Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 361 EQCVALTSSPVISDALV--------------EQALEGENTALPTFVEARNQFELNYLRKL 406 E+ V L + + G + + ++ E ++ ++ Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRV 434 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ G T A+ + G NRT +K L ++ L+ Sbjct: 435 LEACGGQKTKASAVLGINRTTLWKKLRQYGLE 466 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 626 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 254/470 (54%), Gaps = 35/470 (7%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + ++ +VDDD + +L +T EG E + L+ LN E+ D+++SD+RM +MD Sbjct: 2 QKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I++ P +PVII+TAH + AV A QQG F +L KP D D I+ A+ Sbjct: 62 GLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITH 121 Query: 124 SAPATDERWREAI-------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 E I + +P M + +++S +SVLING+SGTGKE+ A A Sbjct: 122 YREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHA 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR PFIA+N A+P+ L+ESELFGH +GAFTGA R+G F+ A GG+LFLDE Sbjct: 182 LHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q +LLRVL E + +G + ++VRII+ATH+DL K + G+FREDLY+R Sbjct: 242 IGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYHR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ +++P L +RTEDIP LA + L++ A+ ++ ++K +M W GNVRQL Sbjct: 302 LNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPT-------------------------- 390 NV +T+S I + + + Sbjct: 362 ENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGKE 421 Query: 391 --FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +A QFE L L T+G+ AAR+ G R + L ++ Sbjct: 422 NILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLKELGIE 471 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 163/467 (34%), Positives = 267/467 (57%), Gaps = 26/467 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSE----GYSVVTAESGAEGLRVLNREKVDLVISD 56 M++K L+VDD+ L + + L S +++ A +G E L + +++ DLV+ D Sbjct: 1 MTNKLHT-LIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMD 59 Query: 57 LRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 ++M EM+G++ I++ P V+++TAH ++ DAV A ++G + ++ KPV L + Sbjct: 60 VKMPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEI 119 Query: 117 IDDALEQSAPAT---------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 + +LE + D+ IV S M + + + D +VL+ G++G Sbjct: 120 VRKSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENG 179 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH SPR S F+AINCGA+PE L+ESELFGH +GAFTGAV + G FQ A Sbjct: 180 TGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLA 239 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GTLFLDEIG++ +QVKLLRVLQERK P+GSNR++ RII+AT+R+L K M G Sbjct: 240 NNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEG 299 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 EFREDL+YRLNV+ + +P L ER +DI LA + +++ +++H + A + +A+ L + Sbjct: 300 EFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSY 359 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGEN------------TALPTFVEAR 395 WPGN+R+L N+IE+ + +S I+ + +++ + F + Sbjct: 360 RWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFK 419 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDF 442 + E ++ L+ G + A + + + ++ ++ ++ Sbjct: 420 EEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRKYGINVKEY 466 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 167/444 (37%), Positives = 258/444 (58%), Gaps = 12/444 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 + +VDD+P + K L L EGY V S L + D+V SD+R+ +MDG++ Sbjct: 5 RVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLE 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +I+ ++P V+I+T +GSI A+ A ++G F ++TKPV+ + A E+ Sbjct: 65 LLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGM 124 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + IV SP + L R VA D +VLI G+SGTGK + A A Sbjct: 125 RMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALA 184 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ SPR ++PF+ NCG E+L+ SELFG+ +GAFTGA +++ GL +AA GGT+FLDE Sbjct: 185 LHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDE 244 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G+MP +QV+LL VLQER++ +G + +D+++R+I+AT+RDL + +G FREDL++R Sbjct: 245 VGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFR 304 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVVS +P LA+R EDIPLL H + + + V+ A+ L S+PGNVR+L Sbjct: 305 LNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVREL 364 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTAL--PTFVEARNQFELNYLRKLLQITKGNV 414 N+IE+ VALT I + + + A + + E Y+ ++L+ T N Sbjct: 365 ENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTGYNK 424 Query: 415 THAARMAGRNRTEFYKLLSRHELD 438 AA++ G RT ++ L + ++ Sbjct: 425 RLAAQVLGVPRTTLWRKLKEYGVE 448 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 262/487 (53%), Gaps = 55/487 (11%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ + L L+ G+ V AE+G L ++ ++ DLV++D+RM EMD Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ +I+ P +PV+I+T + ++ AV A +QG ++ KP + + + + +Q Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQ 120 Query: 124 SA---------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 + ++ R LRLLE+AR VA S +VL+ G+SGT Sbjct: 121 RQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGT 180 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV +++G F+ A Sbjct: 181 GKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAH 240 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 GGTL LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL A+ G Sbjct: 241 GGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGN 300 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDL+YRLNV+ +++PA+ ER EDI LLA+H + + R++ + S + +R + Sbjct: 301 FREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQ 360 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDAL-----VEQALEGENTALPTF------------ 391 WPGNVR+L N++E+ V L++ P + + A P Sbjct: 361 WPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAA 420 Query: 392 -----------------------VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEF 428 + E + + L+ T N THAA+M G + Sbjct: 421 DLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTL 480 Query: 429 YKLLSRH 435 L+ + Sbjct: 481 RNKLNEY 487 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 625 bits (1614), Expect = e-178, Method: Composition-based stats. Identities = 159/460 (34%), Positives = 257/460 (55%), Gaps = 24/460 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S A +L+ DD + + + + L+ G+ V+ GAE + ++ D+V++DLRM Sbjct: 25 SPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVP 84 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG+++ ++++ P V++++AHG+I AV A ++G F+ KP D L ++ ++ Sbjct: 85 VDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSI 144 Query: 122 EQSAPATDE----------------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 E + +V S M R+L+Q R VA + +VL+ G+ Sbjct: 145 EIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGE 204 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SGTGKE+ A+AIH+ASPR +PF++I+C A+PE LLESELFGH +GAFTGA+ + G F+ Sbjct: 205 SGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFE 264 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A GGTLFLDE+G++P +QVKLLRVLQER+ +G ++++VR++SAT+R+L + + Sbjct: 265 LANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVE 324 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 G FREDLYYRLNVV + +P L +R D+ LA + + A R V + +A++ L Sbjct: 325 SGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLR 384 Query: 346 TASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQ 397 WPGNVR+L NVIEQ + ++ + + + A + + Sbjct: 385 RHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGDRSLTDILED 444 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + +G AR+ G + Y L ++ + Sbjct: 445 LERQLILAAYEKARGVKAETARLLGIKPSALYYKLEKYGI 484 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 624 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 172/461 (37%), Positives = 261/461 (56%), Gaps = 20/461 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L+V+DD L K++ ++L EGY +A + E +L++ LV++DL + Sbjct: 1 MSS--GRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G++L +++ P VI++TA G+I AV A + G + FLTKP+ L + Sbjct: 59 GMSGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRC 118 Query: 121 LEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE + + EAIV S ++R L+ A VA +D ++LI G++GTGK Sbjct: 119 LEHHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R +PFI INCGA+P++LLESELFGH +G+FTGA+++++G + A+GG Sbjct: 179 ELVAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+ LDEIG+MP LQV++LR++QER++ +G+ ++VRI++ATHR+L + G FR Sbjct: 239 TVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL VV + +P L ERT DI +L H L + +H STD + SWP Sbjct: 299 EDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWP 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE--------ARNQFELNY 402 GNVRQL N +E+ V L I+ + + L P V E + Sbjct: 359 GNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDL 418 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + + L+ GN T AA+ +R F L +++ + K Sbjct: 419 ILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKYDFHPDVLK 459 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 163/463 (35%), Positives = 252/463 (54%), Gaps = 29/463 (6%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L+VDD+ + + L + L EGY+V A+ G L +L RE DL+ISD+RM +G Sbjct: 1 MKRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++L ++++P +PV+++TA S DAV+A + G + ++TKP D + + AL Sbjct: 61 LELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSP 120 Query: 125 AP---------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 P E I+ SP M ++ + VA + +VLI G+SGTGKE+ A+ Sbjct: 121 QPLPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH SP + F+ I C A+PE L ESE+FGH +GAFTGA S+R GLF+ A GT FLD Sbjct: 181 AIHRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +Q KLLRVLQER+++ +G+ I +R+ISAT++DL + + G FREDL+Y Sbjct: 241 EIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV +++P L ER D+PLL +H L + A + S+ AM+ L+ +PGNVR+ Sbjct: 301 RLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------------------FVEAR 395 L N+IE+ VA+ +S +I + + + Sbjct: 361 LENIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTL 420 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + L+ + T AA + + + ++ +D Sbjct: 421 ADLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKKYGID 463 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 149/449 (33%), Positives = 236/449 (52%), Gaps = 14/449 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+VDD+ + + L GY +A+ G L ++ + DLV D++M Sbjct: 1 MTG-RLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++ G ++ I+ P V+++TA+GS+ AV A ++G +L KP D D L ++ Sbjct: 60 DVSGFEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERL 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+Q + ++ S M +L VAQ D +L+ G++GTGK Sbjct: 120 LQQKKIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R PF+ INCGA E LLESELFGH AFTGA ++G + A GG Sbjct: 180 EMVAKAIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+G++P +Q+ LLRVL+E+ +G +I ++ R+I ATH+DL + RG FR Sbjct: 240 TLFLDEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +D YYRLNV+ ++IP L R +DIP+LA L + + V ++ L + WP Sbjct: 300 QDFYYRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L N IE+ V L ++ P ++ + E +L ++L Sbjct: 360 GNVRELENAIERAVVLAKERYLTRDDFAFLCRSPAQPFP---QSLRENEKQHLERILSFC 416 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDA 439 N++ AA + +R + + + ++ Sbjct: 417 GWNISKAAAILEISRVTLHSKIRKFDIRP 445 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 171/437 (39%), Positives = 262/437 (59%), Gaps = 6/437 (1%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL+DD+ +LK++ L+ G+ V+TA+S E L ++ +EK DL+ISD +++ G++ Sbjct: 3 KILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLE 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + +K P +I+TA+GSI AV A ++G ++ KP+D D L + ID +++ Sbjct: 63 ILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQEN 122 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 E E I+ +S M L ++ +V++S+ S+LI G+SGTGKE+ A+AIH S R ++ Sbjct: 123 FDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRSKRANQ 182 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 PFI INC A+P +L E+ELFGH +G+FTGA + G + A GTLFLDEIG+MP +Q Sbjct: 183 PFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMPLFMQA 242 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRVLQER+ +G I + R+ISAT+R+L + + EFREDL+YR+NV+ LKIP Sbjct: 243 KLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIHLKIPP 302 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L ER EDIPLL + + ++ + V DA++ LM WPGNVRQL N+IE+ V L Sbjct: 303 LRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVL 362 Query: 367 TSSPVISDALVEQALEGENTALPTFVEA------RNQFELNYLRKLLQITKGNVTHAARM 420 +I+ + ++ + + + + E N + K+LQ N T AA+ Sbjct: 363 CQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQTRAAQK 422 Query: 421 AGRNRTEFYKLLSRHEL 437 G +R + + L Sbjct: 423 LGISRKQLRTKMKNFGL 439 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 171/466 (36%), Positives = 263/466 (56%), Gaps = 25/466 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ A++L+VDD+ + +LL + L+ EGY V AE G + L +L K DLV+ D+R+ Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M G+ + +K VI+++A+ + AVAA +G + F+ KP+D L Q I + Sbjct: 61 DMSGIDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRS 120 Query: 121 LEQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + + + E IV P M + R VAQ+ +LI G+SGTGK Sbjct: 121 LSLRTVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + PF+ +NCG +PE L+ESELFGH +G+FTGAV +++GLF A G Sbjct: 181 ELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG++ PLQVKLLRV+Q+ + +G +I ++ RI+SAT+++L + + G FR Sbjct: 241 TIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ L +P L ER DI +LA + + ++ V S+ A+ L S+P Sbjct: 301 EDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGEN---------------TALPTFVEAR 395 GNVR+L N+IE+ VAL+++ +I + A+ T E Sbjct: 361 GNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEIL 420 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 E YL+K L+ + GN AA + G + F L + + ++ Sbjct: 421 ADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDKLNVPWDE 466 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 156/442 (35%), Positives = 234/442 (52%), Gaps = 12/442 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+D+ +LL L GY A E VL +V+ DL + + +GM+ Sbjct: 2 RVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGME 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ V+++T HG+I AV A + G + FLTKP + I A+E Sbjct: 62 LLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGI 121 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + V S M ++E+ +A SD VLI G+SG GKE+ A Sbjct: 122 KRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASI 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R KP +A+N ++P++L+E+ELFG+ +GAFTGA S +EG F+ A+G TLFLDE Sbjct: 182 IHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+M LQ KLLR ++ K +G R+I+ NVRII+AT+R L + + RGEFREDLYYR Sbjct: 242 IGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYYR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + IP L ER EDI LA H L ++ ++ F+ A L + W GNVR+L Sbjct: 302 LNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVREL 361 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTH 416 N++E+ V + I + + + + E Y+ ++L+ N Sbjct: 362 KNIVERAVLFSDGDRIDSEDISCLFTHQESKKS--FKTIKDVEREYITEILKQVNFNKRK 419 Query: 417 AARMAGRNRTEFYKLLSRHELD 438 A+ + G Y+ L + ++ Sbjct: 420 ASEILGIPLRTLYRKLESYGIE 441 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 622 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 181/450 (40%), Positives = 261/450 (58%), Gaps = 25/450 (5%) Query: 19 KLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGM 78 K + L EG+ VV + EGL +D+V+ D++M + GM L I+ +P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDALEQSAPATDERWREA-- 135 VI++TA ++ AV A + G + +LTKP + D + + A E+ A R E Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 136 --------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKP 187 ++ +S M + + V+ S +VLI G+SGTGKE+ A+AIH S R KP Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 188 FIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVK 247 F+A+NC AL E LLESELFGH +G+FTGA N++GLF+AA+GGT+FLDEIGD+P QV+ Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 248 LLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307 LLRVLQE +V+ +G+N + ++VR+I+ATH DL +A +G+FREDL+YRLNV+++ +P L Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 308 AERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 +R ED+PLLA+H L+ A + V S AM+ L W GNVR+L NVIE+ V LT Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 368 SSPVISDALVEQALEGENTALPTF--------------VEARNQFELNYLRKLLQITKGN 413 + VI + + T A FE YL LL+ N Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFK 443 V+ AAR AG +R+ F +LL ++E+ K Sbjct: 440 VSSAARAAGVDRSNFRRLLKQYEVAGRSMK 469 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 622 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 252/469 (53%), Gaps = 29/469 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K A +L+VDDD + L L S GY + TA +G E L+ + + VI+D+RM Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M GM++ I+K+ P PVI++TA+G++ AV A ++G F+ KP + + + + Sbjct: 61 GMGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNV 120 Query: 121 LEQSAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + I+T +L +LE + VAQS SVLI G+SGTGKE Sbjct: 121 MATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 +FA+ ++ S R PF+AINC A+P+ LLESE+FG +GAFTGA+ + G F+ A GGT Sbjct: 181 LFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDE+ +M LQ KLLRV+QE+++ LG + ++VRII+ T+ D+ K + FRE Sbjct: 241 LLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV+ LKIP L ER D+ LL ++ L++ + ++ + F+ +KRL WPG Sbjct: 301 DLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV------------------- 392 NVR+L NVIE+ V + V+ + +G + Sbjct: 361 NVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSR 420 Query: 393 -EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + E + L KGN T A+ + G + L +++ A+ Sbjct: 421 GMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQEYQMKAS 469 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 176/499 (35%), Positives = 267/499 (53%), Gaps = 64/499 (12%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDD+ + L L+ GY V AE+G L ++ E DLV++D+RM Sbjct: 2 MGAMGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMP 61 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 EMDG+ + +IQ V+PG+PV+I+T + ++ AV A +QG ++ KP + + + I Sbjct: 62 EMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKV 121 Query: 121 LEQSA---------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 165 + Q P + ++ R LRLLE+AR VA S +VL+ G+ Sbjct: 122 MRQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGE 181 Query: 166 SGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225 SGTGKE+FA+ IH+ S R + PF+A+NC ALPE LLESELFGH +GAFTGAV ++G F+ Sbjct: 182 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFE 241 Query: 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMA 285 A GGTL LDEIG++P LQ KLLRVLQE +V LG + ++V +++ T+RDL +A+ Sbjct: 242 LAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVK 301 Query: 286 RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 G FR+DLYYRLNV+ +++P+L ER +DI LLA+ + + + R+ ++ S A +R + Sbjct: 302 DGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFL 361 Query: 346 TASWPGNVRQLVNVIEQCVALTSSPVISDALV-EQALEGENTALPTFVE----------- 393 WPGNVR++ N++E+ V L++ + + L E A E Sbjct: 362 DYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVD 421 Query: 394 -------------------------------------ARNQFELNYLRKLLQITKGNVTH 416 + + E + + L+ T N TH Sbjct: 422 AAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTH 481 Query: 417 AARMAGRNRTEFYKLLSRH 435 AA+M G + L+ + Sbjct: 482 AAKMLGISVRTLRNKLNEY 500 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 172/464 (37%), Positives = 266/464 (57%), Gaps = 26/464 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+VDD+ G K+L LT G+ V TA SG E L + L++ D+++ Sbjct: 1 MNRT--KILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLP 58 Query: 61 E-MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +DG++L +++ ++I+TA+G I AV A ++G F+++TKP D + I+ Sbjct: 59 GSIDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIER 117 Query: 120 ALEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 +EQ+ + + + I+ S + ++++ VA S +VLI G+SGTG Sbjct: 118 MIEQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTG 177 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH R K F+ INC L E LLESELFGH RGAFTGA+ +++GLF+ A+G Sbjct: 178 KELVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADG 237 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DEIGD+P P+Q K+LRVLQE + PLG +++VRII+AT++ L K + EF Sbjct: 238 GTLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEF 297 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNV+++K+P L ER EDIPLL H + + ++ ++ S + L W Sbjct: 298 REDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHW 357 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE------------ARNQ 397 PGNVR+L N IE+ V LT+ P+I ++ + E+ + A + Sbjct: 358 PGNVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKALDV 417 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 F Y+ ++ GNVT+AAR R ++L ++ + + Sbjct: 418 FNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKKYAIKSRQ 461 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 173/458 (37%), Positives = 264/458 (57%), Gaps = 24/458 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNR--EKVDLVISDLRMDEMDG 64 +L+VDD+PGL ++L + +GY VV A + + + + LV++DL M + G Sbjct: 14 RVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSG 73 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + VI++TAH ++ A+ A + G + F+TKP L ALE+S Sbjct: 74 IEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS 133 Query: 125 APATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + + + S M R+ E +A + +VL+ G+SGTGKE Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ S R ++PF+ +NCGALPE L+ESELFGH +G+FTGA + GLF+ A+GGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++PA LQVKLLRVLQERKVRP+G+ +I ++VR+++AT+RD+ + +G FR+DL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV+ +++P L ER DI LA LR+ A VR +TDA++ L S+PGNV Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----------FVEARNQFELNY 402 R+L N++E+ VAL P I + A+ G + + E + E Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALDEVIGEVERRL 433 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L+ T G AA++ G + L++H L A+ Sbjct: 434 ILQALERTGGVRKAAAKLLGVSFRSLRYRLAKHALAAD 471 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 170/482 (35%), Positives = 257/482 (53%), Gaps = 46/482 (9%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDD+ L + L EG+ V A +G +G++++ E +LVI D+RM MDG Sbjct: 1 MAKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + I+++ +PV+I+TA+ + A+ AT+ G F ++ KP + + I+ A+E Sbjct: 61 LTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAG 120 Query: 125 APAT--------------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E EA+V S M ++ + A +D VL+ G+SGTGK Sbjct: 121 RRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A++ S R KPF+ INC A+P+ LLESELFG+ +GAFTGA + R G + A GG Sbjct: 181 ELVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGDMP +Q KLLR+LQE+++ LG + I ++VRII+AT+ DL A+A G FR Sbjct: 241 TVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL VV+L +P L ER+EDIP LA + L + + + +A+ L WP Sbjct: 301 EDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-------------------- 390 GNVR+L N + + + + + + ++QALE P Sbjct: 361 GNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELI 420 Query: 391 ------------FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 F + +R+ L +T GN T AAR+ G +R + ++ L Sbjct: 421 RRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEKYGLR 480 Query: 439 AN 440 Sbjct: 481 IE 482 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 161/460 (35%), Positives = 249/460 (54%), Gaps = 23/460 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ PA +L+VDD+ + + RL GY V++AESG + L ++ D+++ D+R+ Sbjct: 1 MNSTPARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG+Q + P + V++++AH ++ AV A + G FL KP L +A++ A Sbjct: 61 GIDGVQTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERA 120 Query: 121 LEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTG 169 L EA+V S M ++ +A SD + VLI G+SG+G Sbjct: 121 LANVRTRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSG 180 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH S R KP + +NC ALPE LLESELFGH RGAFT A + + GLF+ AEG Sbjct: 181 KEVVARAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEG 240 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 G++ LDEIGD+P Q KLLR+L+ + R +G +++ +VR+I+AT+ +L + +A G F Sbjct: 241 GSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRF 300 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R DL++RLNVV + +P L E +D+P+L H + + + K V+ + AM+ L W Sbjct: 301 RADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHW 360 Query: 350 PGNVRQLVNVIEQCVALTSS-PVISDALVEQALEGENTALPTFVE-----------ARNQ 397 PGNVR+L NVIE+ L + I + L E + Sbjct: 361 PGNVRELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGLVLDD 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + ++ GN + AAR+ G +R L +H + Sbjct: 421 VERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKKHGM 460 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 166/467 (35%), Positives = 261/467 (55%), Gaps = 26/467 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 P +L+VDD+ +L LL L+ + + + + + +L + DLVI+DLRM Sbjct: 1 MPGKILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGR 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ + +++ P VII+TA+G+I A+ AT++G F ++TKP K+ + +D AL+ Sbjct: 61 DGLGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALK 120 Query: 123 QSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + + ++ S M L Q VA++ +VLI G+SGTGKE+ Sbjct: 121 WQQLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ +H S R + FI +NC LPE ++ESELFGH RG+FTGA+ +++GL + A GTL Sbjct: 181 VARELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGD+ +QVKLLR+LQE + + +GSN +++R I+AT+++L + + RGEFRED Sbjct: 241 FLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNV+++ +P L ER +DIPLL + L + H ++ S + LM WPGN Sbjct: 301 LFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF---------------VEARNQ 397 VR+L N IE+ V + S + V ++ + + Sbjct: 361 VRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIEE 420 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 F+ Y+ K L GNV+ AAR +G R ++L+ +D+ FK+ Sbjct: 421 FQSQYISKALARHSGNVSQAARESGLKRQYLHRLMRETNVDSKTFKK 467 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 176/470 (37%), Positives = 258/470 (54%), Gaps = 29/470 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L+VDDD + + + + G SV A G EG ++ DL++SD+RM Sbjct: 1 MDLTSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM + IQ P+ +TA G++ +AV A + G + ++ KP + + + + Sbjct: 61 NVDGMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 121 LEQSAPATDERWREAI-VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 LE A + ++ + RS M +L AR VA S+ +VLI G+SGTGKE+FA+ IH Sbjct: 121 LEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHE 180 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R+S F+A+NC ALPE L+ESELFG+ +GAFTGAV+ + G F+ A+GGT+ LDE+G+ Sbjct: 181 NSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGE 240 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P LQ KLLRVLQE++V LG + INVRI++ T++ L K + G FREDLYYRLNV Sbjct: 241 IPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNV 300 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 +S+++P L ER EDI LA + A+ + + DA+K L+ WPGNVR+L + Sbjct: 301 ISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHT 360 Query: 360 IEQCVALTSSPVISDALV-------------EQALEGEN------------TALPTFVEA 394 IE+ V L VIS+ + +Q L + +A F Sbjct: 361 IERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGT 420 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH---ELDAND 441 + E + K L+ T GN T AA M G L+ + L+ D Sbjct: 421 IAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLNEYKENGLNIED 470 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 169/452 (37%), Positives = 258/452 (57%), Gaps = 17/452 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S +L+VDD+ +L L + L +EG+ TA G +G+ L + D+V++D+RM + Sbjct: 6 SDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMPD 65 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 + G+Q+ + ++V P +PVI++TA ++ AV A +G F ++ KP D L + A Sbjct: 66 VSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRAA 125 Query: 122 EQSAPATDERWREA------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 E + + + + RS L +L A VA +D +VLI G+SGTG Sbjct: 126 EHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGTG 185 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+ IH+ S R F++INCGALPE LLESELFGH +G+FTGAV ++ GLF AA Sbjct: 186 KEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAANH 245 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT FLDEIG+ QVKLLR LQ+R+V P+G+ + ++ R+++AT+RDL + + RG F Sbjct: 246 GTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGGF 305 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R DL+YRLNV+++ +P L +R +DIP+LA L ++A + + A+ LM W Sbjct: 306 RADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAYGW 365 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTAL-----PTFVEARNQFELNYLR 404 PGNVR+L N +E+ V L S IS + + + E Y++ Sbjct: 366 PGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEAIERAYIQ 425 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 +LQ GN + AA M G + + Y+ L+R+ Sbjct: 426 WVLQNEGGNKSRAADMLGIDPSTLYRKLARYG 457 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 171/451 (37%), Positives = 257/451 (56%), Gaps = 16/451 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + K A +L+++DD L +LL + LT GY V +A G EGL +E ++V+ D+RM Sbjct: 6 TRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPG 65 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+++ +++ VI+ T HG+I AV + G + +LTKPV D L ID A Sbjct: 66 MDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKAN 125 Query: 122 EQSAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 E++ + IV +S ++ ++LE R +D VLI G+SG GKE+ Sbjct: 126 EKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKEL 185 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 FA+A+H+AS R +KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ GTL Sbjct: 186 FARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTL 245 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DEI +MP +QVKLLR+L+ R +G N DI ++VR + A+++ L + RGEFRED Sbjct: 246 FMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRED 305 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L++R+N++ + IP L ER EDI L+ + L ++A S +AM L SWPGN Sbjct: 306 LFHRINLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPGN 364 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTA------LPTFVEARNQFELNYLRKL 406 VR+L N I + L + +IS L+ + + E +Y++K+ Sbjct: 365 VRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQKV 424 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L+ +GN + AA++ +R Y L R+ L Sbjct: 425 LEKLEGNKSKAAKVLEIDRKTLYTKLERYGL 455 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 172/467 (36%), Positives = 255/467 (54%), Gaps = 36/467 (7%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 H+L+ DD+ G+ + L EGY V A S E LR+ + DL + D+ + E DG Sbjct: 1 MTHILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + EI ++ V++++ HG+I AV A + G ++ KP D + +AL+ Sbjct: 61 LSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLR 120 Query: 125 APATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + R +V SP + L E VA ++ VLI G++GTGKE+ A+++ Sbjct: 121 GLERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSL 180 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R S PF+ +NC A+PE L+ESELFGH +GAFTGA+S R G F+ A GG LFLDEI Sbjct: 181 HEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEI 240 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM Q ++LRVLQER++ +G R I ++VR+++AT+RDLP +AR EFREDL+YRL Sbjct: 241 GDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRL 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVVS+++P L ER DIP+L H + + FS +A++ L +WPGNVR+L Sbjct: 301 NVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELK 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGEN-----------------------------TAL 388 N +E+ + L PVI +E A+ G Sbjct: 361 NTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPD 420 Query: 389 PTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 EAR++FE Y+ +L +GN+ AA+ G +RT ++ + + Sbjct: 421 LPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQW 467 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 169/449 (37%), Positives = 267/449 (59%), Gaps = 16/449 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ LL+V+DD L L L +GY+ V SG + L L+RE D+VI+D+++ Sbjct: 1 MT--KPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+ L EI+K + ++++TA+ SI AV A + G +L KPVD + L ++ Sbjct: 59 GMGGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKL 118 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ R + +V SP M R+ + VA S SVLI G++GTGK Sbjct: 119 REKQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A AIH S R KPF+A++C AL E +LESELFGH +GAFTGA+ +R+G F+ A+GG Sbjct: 179 ELVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+ +M +QVKLLRVL++ + +G + I ++VR I+AT+R+L + ++ G FR Sbjct: 239 TLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+++++P L ER +DIP+L+N+ + A+++K ++ F +A+K L++ W Sbjct: 299 EDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQ 358 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP----TFVEARNQFELNYLRKL 406 GN+R+L N IE+ + L S IS + +++ +N +P + E +++ Sbjct: 359 GNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEIIQRT 418 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRH 435 LQIT G+ AA++ G + + Sbjct: 419 LQITNGSKQSAAKILGISTRKIEYKTKEW 447 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 170/447 (38%), Positives = 257/447 (57%), Gaps = 11/447 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + A L+VDD+P + +LL + L +A + E +L RE DL ++D+R+ Sbjct: 1 MSRQKA--LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L IQ+ P PV ++TA+GS+ A+ A + G F FLTKPVD L + + A Sbjct: 59 DGSGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATA 118 Query: 121 LEQSAPATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 L P +E + ++ SP M L Q +A+S V I+G+SG+GKE+ A+ IH Sbjct: 119 LRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLIHE 178 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 PR +PF+ +NCGA+P +L+ESE FGH +G+FTGA+ +++GLFQAA GGTLFLDE+ D Sbjct: 179 QGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVAD 238 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 +P +QVKLLR +QE+ VR +G +++ ++VRI+ ATH+DL + G FR+DLYYRLNV Sbjct: 239 LPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNV 298 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L++P L ER EDIPLLA +L++ A + DA ++L +PGNVR+L N+ Sbjct: 299 IELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENM 358 Query: 360 IEQCVALTSSPVISDALVEQALEGEN--------TALPTFVEARNQFELNYLRKLLQITK 411 +E+ L I + A + + + E + + L+ T+ Sbjct: 359 LERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEETR 418 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELD 438 N T AA+ G L + +D Sbjct: 419 WNRTAAAQRLGLTFRSMRYRLKKLGID 445 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 174/453 (38%), Positives = 253/453 (55%), Gaps = 16/453 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K + +LLVDDD LL+ + L L + V TA S E + + D+V+SD+R+D+ D Sbjct: 2 KNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G + A +K +P VI+LT +G++ A+ A + G F LTKP+ + L +I+ AL Q Sbjct: 62 GFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALSQ 121 Query: 124 SAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + E IV M ++ + +A + +VLI G+SGTGK + Sbjct: 122 RKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLL 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH R + F+ + CGA+PE LLESELFGHA G+FTGA ++ G F A+ GT+F Sbjct: 182 ARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTIF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG A LQVKLLRVLQE + P+GS + ++ R+I AT+ L +A+A G FR+DL Sbjct: 242 LDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NV+++++P L ER DIPLLANH L++ E + FS D + + +WPGNV Sbjct: 302 YYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG------ENTALPTFVEARNQFELNYLRKLL 407 R+L NV+E+ V L P + + A+ + EA E + +L Sbjct: 362 RELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDVL 421 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ + N A G NRT YK + R LD Sbjct: 422 EMHQWNRNATADALGINRTTLYKKMKRLGLDKQ 454 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 169/461 (36%), Positives = 258/461 (55%), Gaps = 22/461 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L+VDD+ + + L + L +EGY+V+ AES +GL VL E VDL + D+R+ Sbjct: 23 MDPTKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLP 82 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ L + +++ +PVI+++ H D V A ++G F +KPVD+D + ++ +A Sbjct: 83 GMDGLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNA 142 Query: 121 LEQSAPA--------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 L + + R+ + ++ SP M +L E VA + VL+ G+SGTGKE+ Sbjct: 143 LSRRDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKEL 202 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A +H S R PF+ +NC A+P +L+ESELFGH +G+F+GA + R G F+ A GGTL Sbjct: 203 VAAEVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTL 262 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM Q K+LR LQ +V +GS + ++VRII+AT++DL + + G FRED Sbjct: 263 FLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFRED 322 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L++RLNVV L +P L +R +D+P+LA + A + + RL WPGN Sbjct: 323 LFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGN 382 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-------------TFVEARNQFE 399 VR+L NV E+ V ++ I+ A V + + P E R+ E Sbjct: 383 VRELRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDLVE 441 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +Y+ L+ N+T AA+ G RT +K + +H L Sbjct: 442 RDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQHGLSRA 482 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 183/465 (39%), Positives = 259/465 (55%), Gaps = 28/465 (6%) Query: 1 MSHK-PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ +LLVDDDP + K+LG LT G + A G E L +L + VD+V+SD+RM Sbjct: 1 MNESLRGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRM 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 MDG+Q+ AE+ + P +PVI+LTAHG++P AV A + G F+ KP D++ + + Sbjct: 61 PGMDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRK 120 Query: 120 ALEQSA---PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 AL ++ R + RS M + A +VL+ G+SGTGKE+ A+A Sbjct: 121 ALLRAQGEEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H+ASPR PF+ ++C ALP+ LLESELFG+ +GAFTGA + + G + A GGTLFLDE Sbjct: 181 VHDASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +GD+ +QVKLLRV+QER++ LG + + ++VR ++ATH+ L + + G FREDL+YR Sbjct: 241 VGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV + IPAL ER +DI LA H L A+ + TD + L WPGNVRQL Sbjct: 301 LNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP------------------------TFV 392 N +E+ V L+ + VI V Q L + P T Sbjct: 361 QNFLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLE 420 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 R + E + L+ N T AAR+ G +R Y L + L Sbjct: 421 SQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLEEYGL 465 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 167/455 (36%), Positives = 242/455 (53%), Gaps = 17/455 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRL-TSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ +L VDD+P ++ R+ + V TA SGAE L L D+VI+DL M Sbjct: 1 MTVAT-RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSM 59 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 MDG++L +EI+ + P + ++ILT+ S V A + G + +L KP D + + ++I Sbjct: 60 PLMDGIELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIAT 119 Query: 120 ALEQSA----------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 L A + ++ E ++ + M + E VAQ+ +VLI G+SGTG Sbjct: 120 ILSHKAAVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTG 179 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A AIH S R KPFI INC AL E L+ SELFGH +GAFTGAV+ ++GLF+ A G Sbjct: 180 KELIASAIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASG 239 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIGD+ QV LLR+L+ + +G I +VR+I AT+RDL A +F Sbjct: 240 GTLFLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQF 299 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRLNVVSL+ P L +R DIPLL + L + + + + DAM L W Sbjct: 300 REDLYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF-----VEARNQFELNYLR 404 PGN R+L N+IE V + + + + + E ++ Sbjct: 360 PGNCRELANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIK 419 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 K+L+ + N+ AA + R Y + ++ L Sbjct: 420 KVLEESNWNLKKAAELLDIARGTLYGKMEKYHLTK 454 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 170/460 (36%), Positives = 251/460 (54%), Gaps = 23/460 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 + A +LLV+D+ +L L G+ V + + K DL + D+R+ + Sbjct: 2 KQSAFILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDG 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 +G++L E + P M +II+T + + AV A + G FL KP D D + ID+ ++ Sbjct: 62 NGIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIK 121 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 D + ++ + P + +L E L+A SD +VLI G+SG GKE+ Sbjct: 122 TRQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEV 181 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H + R+ KP ++INCGA+PE+LLESELFGH +GAFTGAV R G F+ A GGT+ Sbjct: 182 LAKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTI 241 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDM A LQVKLLRVLQER P+GS + I ++VR+I+ATHRDL +A G FRED Sbjct: 242 FLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFRED 301 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV+ L +P L ER +DI LL +H + + ++ K + S + + ++ WPGN Sbjct: 302 LYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGN 361 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEG-------------ENTALPTFVEARNQFE 399 VR+L N+IE+ L ++ + + EN ++FE Sbjct: 362 VRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFE 421 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + + LQ + N AA NRT + + + L Sbjct: 422 SHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKKKGLQP 461 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 148/449 (32%), Positives = 253/449 (56%), Gaps = 16/449 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 ++L+VDD+ + L+ LT EGY V T S + + D++ D+ + + +G+ Sbjct: 3 NILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEGLD 62 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ P V++++ H +IP AV A ++G F FL KP+ + + I+ +Q Sbjct: 63 LLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQIKV 122 Query: 127 ATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + + I+ SP ++ L Q VA+++ V+I G++GTGKE+ A++IH Sbjct: 123 KQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIHY 182 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 SPR PF+ INC A+P++L E+E FG+ +GAFT A + + G + A+ GTLFLDE+ D Sbjct: 183 QSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVAD 242 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 M Q KLLRVL+E++ LGSN I +++R+ISAT++D+ K + +G FR+DL +RL+V Sbjct: 243 MSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLSV 302 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + + +P L ER EDI LLAN+ LR+ + +K S + + +WPGNVR+L N+ Sbjct: 303 IPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELKNL 362 Query: 360 IEQCVALTSSPVISDALVEQALEGE---------NTALPTFVEARNQFELNYLRKLLQIT 410 +E+ V L S +I + + + G + +A+ + E ++K L++ Sbjct: 363 MERLVILNSESIIYNKDLPPHMLGNVKLEKEESIPITIRPLKDAKEELEKQMIKKALKVY 422 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDA 439 N+ A+ + + Y+ + ++ L+ Sbjct: 423 NNNLKEIAKALDIDLSSLYRKIKQYNLEE 451 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 283/469 (60%), Gaps = 32/469 (6%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 KP +L+VDD+P LL+ L L +GYSVV +S + L E D+ + D++M ++ Sbjct: 8 KPVRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLS 67 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQ-AIDDALE 122 G++L + ++ +P + VI++T H ++ A+AA + G + +LTKP + L A+ A E Sbjct: 68 GLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAE 127 Query: 123 QSAPATDERWRE------------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + R E +V S + ++ VA S +VL+ G+SGTGK Sbjct: 128 RKMLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGK 187 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H SPR ++PF+A+NCGAL E LLESELFGH +GAFTGA +++GLF AA+GG Sbjct: 188 ELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGG 247 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIGD+P QV+LLRVLQE +++ +GS + ++VR+I+ATHRDLP+ + G+FR Sbjct: 248 TIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFR 307 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+++ +P+L +R +D+PLLA+H LR+ AER VRA + DA++ L WP Sbjct: 308 EDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWP 367 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTAL-------------------PTF 391 GNVR+L N IE+ V L ++ + A+ G L Sbjct: 368 GNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAK 427 Query: 392 VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ +FE Y+ L++ N++ AAR AG +R+ F ++L ++ D Sbjct: 428 EQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKYRTDVE 476 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 173/467 (37%), Positives = 259/467 (55%), Gaps = 29/467 (6%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+ DD+P + +L L LT GY V G + L+ L D+++ D+RM + DG+ Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + E P + ++++A+GS A+ A G F ++ KP D + + A E+ Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + R + I+ SP + LL Q +A D +VLI+G+SGTGKE+ A+ Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR F+A+NCGA+P L+ESELFGHA+GAFT A + + GLF A+GGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P QVKLLRVLQE ++RP+G NR +NVR+++AT RDL + +A+G+FREDLYYR Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR--AFSTDAMKRLMTASWPGNVR 354 LNVV+L++P L ER ED+PLLA + + + +A L + +WPGNVR Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----------------TFVEARNQ 397 +L N +E+ V L P I A + + L + P + A + Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRE 425 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 E +Y+R L+ TKGN T AA + + + + +D + E Sbjct: 426 LEESYIRAALRKTKGNRTRAAELLDISHRALLYKIKEYGIDPDAEAE 472 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 163/461 (35%), Positives = 254/461 (55%), Gaps = 30/461 (6%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ + L L Y V A S E +++ + D++++DLRM Sbjct: 1 MVPSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKS 59 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+++ + V+++TA+G+I AV A ++G FLTKPV+ + L I AL+ Sbjct: 60 GLKVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKA 119 Query: 124 SAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + I+ SP + ++++ +LVA S ++LI G+SGTGKE+ Sbjct: 120 KTLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELI 179 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 AQAIH +S R+ PF+A++C AL E LLESELFGH RG+FTGA R G F++A+GGTLF Sbjct: 180 AQAIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLF 239 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ A QVKLLR L+ + + +G ++ ID++VR+++AT+R L + + G+FREDL Sbjct: 240 LDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDL 299 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 ++RLNVV + +P L ER ED+PLL H + +E + A+ L WPGN+ Sbjct: 300 FFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNI 359 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQ-----ALEGENTALPTFVE--------------A 394 R+L N E V L +S+ +E L G PT + Sbjct: 360 RELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTSFS 419 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + E LR+ L ++GN T AA + G +R ++ +++ Sbjct: 420 VEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQW 460 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 169/448 (37%), Positives = 252/448 (56%), Gaps = 23/448 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +L+ DDD + L+ +GY V A G + L+ + +V +VI+D+ M ++ Sbjct: 2 ETPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVN 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++ ++P + I +A + + G F +L KP + + L + LE Sbjct: 62 GLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEH 121 Query: 124 SAPA----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + I+ S ML L E VA SD +VLI G+SGTGKE+ Sbjct: 122 QALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH+ S R+ K F+A+NC A+P++LLESELFGH +G+FTGAV++R G F+ A+ GTLF Sbjct: 182 ARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLRVLQ R++ P+GS R ++VRII+AT+++L +A EFREDL Sbjct: 242 LDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+V+ + +P L ER D+PLL N L + + V+ F M+ L WPGNV Sbjct: 302 YYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQA---------LEGENTALPT----FVEARNQFEL 400 R+L N++E+ V + ++ VIS + + L GE LP A +FE Sbjct: 362 RELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFEN 421 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEF 428 + + L+ + GN AA + RT Sbjct: 422 RLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 176/472 (37%), Positives = 262/472 (55%), Gaps = 36/472 (7%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 + +L+VDDD L + L EGYSV A SG GL + + DLV+ D++M M G Sbjct: 1 MSSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++ FA I+++ +PV+++TA+G+ A+ AT+ G F ++ KP D + I ALE Sbjct: 61 LEAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAG 120 Query: 125 APAT---------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 D AI+ SP M + + VAQ+D +VLI G+SGTGKE+ A+ Sbjct: 121 HMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AI+ S R KPF+ INC ALPE LLESELFG+ +GAFTGA S R G + A GGT+FLD Sbjct: 181 AIYQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q K+LR+LQER + PLG N ID++VRI++AT+R+L KA+ FREDLYY Sbjct: 241 EIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV++ +P L +R D+ LLA++ + ++ K + +A K + WPGNVR+ Sbjct: 301 RLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA--------------------- 394 L N +++ + + + + Q + G + A P+ + Sbjct: 361 LANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDT 420 Query: 395 ------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ +R+ LQ+T+GN + AA++ G R + + L Sbjct: 421 ARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDKLNLSIE 472 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 169/459 (36%), Positives = 246/459 (53%), Gaps = 26/459 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + +L+V+D+P L L +++ Y TA G E L + + +V++DL+M Sbjct: 22 MSQE--KVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMP 79 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA---I 117 MDGMQL + ++ VI+LTA GSI AV A + G F +L KPVD L + Sbjct: 80 RMDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNV 139 Query: 118 DDALEQSAPATDER-------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE R +V S M + VA ++VSVLI G+SGTGK Sbjct: 140 SRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGK 199 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ +H SPR +KPF+A+NC A+PE L+ESE+FGH +GAFTGA+ R G F+ AE G Sbjct: 200 ELVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEG 259 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TL LDEIG+MP Q KLLRVL++R+ R LGS + I+VR+++AT+++ +A+A GE R Sbjct: 260 TLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELR 319 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DLYYRLNV ++ +P L E EDIP +A ++ +H + + RL++ WP Sbjct: 320 GDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWP 379 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQ--------------ALEGENTALPTFVEARN 396 GNVR+L N +E+ V L + + + A N + Sbjct: 380 GNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVD 439 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + E + K L+ T N T AA + G + + L + Sbjct: 440 EAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLKEY 478 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 166/474 (35%), Positives = 241/474 (50%), Gaps = 39/474 (8%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + + +VDDD + +L L + + E L L + D++ISD+ M + D Sbjct: 2 QKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDND 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L +++ P +P+II+TAH + AV A QQG F +L KP D D + AL Sbjct: 62 GLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALNY 121 Query: 124 SAPATDERWR--------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 I+ +P M + +++S +SVLING+SGTGKE+ A Sbjct: 122 YRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIAD 181 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SP+ + PFIA+N A+P+ L+ESELFGH +GAFTGA R+G F+ A GG+LFLD Sbjct: 182 ALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFLD 241 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIGDMP +Q +LLRVL E + +G I ++VRII+ATH+ L + + G+FREDL++ Sbjct: 242 EIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLFH 301 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV+ + +P L ERTEDIP LA + L Q A++ + + LM+ W GNVRQ Sbjct: 302 RLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVRQ 361 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN------------------- 396 L NV ++SS +I + L+ L + + Sbjct: 362 LENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTALE 421 Query: 397 ------------QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 Q E L L TKG+ AAR+ G R + L + Sbjct: 422 NNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLKEFGMS 475 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 177/493 (35%), Positives = 258/493 (52%), Gaps = 57/493 (11%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 PA +L+VDD+ +L L L GY A SG L V++ VD V+ D++M +MD Sbjct: 1 MPASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ A++ +++P +PVI+++ HG+I AV ATQ G FL KP+ ++ L A+ + L+ Sbjct: 61 GLTALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKH 120 Query: 124 SAPATDERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A + + A +V P M R+ + A S+ VLI G++GTGKE+ A+A+ Sbjct: 121 QAAMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARAL 180 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R +PF+ +NC A+P +L+ESELFGH +GAFTGAVS R G F+ A GTLFLDEI Sbjct: 181 HQHSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEI 240 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDMP +Q KLLRVLQE ++ +G ++VR+++AT+++L +A G FREDLYYR+ Sbjct: 241 GDMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRI 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + P L ER ED+P L L +A ++ S DA+ + +PGNVR+L Sbjct: 301 NVVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELR 360 Query: 358 NVIEQCVALTSSPVISDAL-VEQALEGENTALP--------------------------- 389 N++E+ L P+++ +E G N P Sbjct: 361 NLVERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPA 420 Query: 390 -----------------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRT 426 TF E E ++ +L T NVT AAR+ R Sbjct: 421 PAIAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERG 480 Query: 427 EFYKLLSRHELDA 439 FYK + L Sbjct: 481 HFYKKMKALGLRR 493 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 617 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 212/453 (46%), Positives = 293/453 (64%), Gaps = 10/453 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M +L +DDDP L+LLGL L SEGY V+ + +G++ L + DLVI+DLRM Sbjct: 1 MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDGM + +Q + P +PVI+LTAHGSIP+AVAA + F +L+KP + L + A Sbjct: 61 GMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 L Q + R A I+ RSP M L+++ VA S SV ++G+SG+GKE Sbjct: 121 LAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 A+AIH+ASPR PF+A+NCGA+P L ESELFGH +GAFTGA + GL ++A GGT Sbjct: 181 RVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI D+P LQVKLLRVLQE +RP+G+ +I +++R+ISATH+D+ A G FRE Sbjct: 241 LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL+V+ L++P+L+ER EDIPLLA H L + ++R + FS +A+ +LM SWPG Sbjct: 301 DLYYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQA-LEGENTALPTFVEARNQFELNYLRKLLQIT 410 NVR+L N + A+T ++ + +G +A P +A+ FE YL LL+ T Sbjct: 361 NVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAFPPLQDAKAAFERGYLENLLRAT 420 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 GN++ AAR+AGR+RT+ YKL+ +H L FK Sbjct: 421 DGNISRAARIAGRHRTDLYKLMRKHSLAPQLFK 453 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 213/458 (46%), Positives = 296/458 (64%), Gaps = 15/458 (3%) Query: 1 MSHK-----PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVIS 55 MS K P H+ ++DDD L+LLGL L SEG+ V + + ++ + RE DLVI+ Sbjct: 1 MSRKSLGSDPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVIT 60 Query: 56 DLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQ 115 DLRM EMDGM++ +Q++ P +PVI+LTAHGSIP+AVAA + F +L KP + L Sbjct: 61 DLRMPEMDGMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELES 120 Query: 116 AIDDALEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 + AL Q + + A I+ RSP+M +L+++ VA S SV + G+S Sbjct: 121 LVAAALRQRQASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGES 180 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 G+GKE A+AIH ASPR PF+A+NCGA+ L ESELFGH +GAFTGA + GL +A Sbjct: 181 GSGKERVARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRA 240 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 A+GGTLFLDEI D+P LQVKLLRVLQE +RP+GS + +++R+ISATH+D+ A Sbjct: 241 ADGGTLFLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTAS 300 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 G FREDLYYRL+V+ L++P+LAER EDI LLA H L + R + ++ FS +A+ +L+ Sbjct: 301 GAFREDLYYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLIC 360 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVE-QALEGENTALPTFVEARNQFELNYLRK 405 WPGNVR+L N + ALT ++ + + G +A P +A+ FE YL Sbjct: 361 RPWPGNVRELENAVTLAAALTEKGWVAAETIPDPSRAGGRSAFPPLQDAKAAFERGYLEN 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 LL+ T GN++ AAR+AGR+RT+ YKL+ +HEL +FK Sbjct: 421 LLRATDGNISRAARIAGRHRTDLYKLMRKHELTPQEFK 458 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 157/459 (34%), Positives = 237/459 (51%), Gaps = 23/459 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 + LL+VDD+ L++ L LT G+ A L + D+++SDL M Sbjct: 7 NPRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGT 66 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+QL + P + II+T G+I AV A + G F ++ KP + +D A+E Sbjct: 67 DGIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAME 126 Query: 123 QSAPATDERWREA-------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 + IV P + ++++ VA + +VL+ G SGTG Sbjct: 127 VRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTG 186 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+A+H S R KP + +NC L E LLESELFGH +GAFTGA + GLF+ AEG Sbjct: 187 KELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEG 246 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLF+DE+ +M LQ KLLRVL++ R +GS ++ +VRII+AT++ L G F Sbjct: 247 GTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRF 306 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL++RL+V+++ +PAL +R ED+P L H L + A L W Sbjct: 307 REDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDW 364 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVE--------QALEGENTALPTFVEARNQFELN 401 PGN+R+L NV+E+ L VI+ + GE A T + ++ E + Sbjct: 365 PGNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRVERH 424 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++R +L GN AA+ G +R Y+L+ +++L Sbjct: 425 HVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDKYKLSGE 463 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 186/466 (39%), Positives = 279/466 (59%), Gaps = 25/466 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLT-SEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ + LL+VDD+ LL+LL L G V A SG E L VL RE VDL++ D++M Sbjct: 1 MTKE--TLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKM 58 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 EM+G++L +++ P + V+++TAHG I AV A + G + F+TKP D + L +++ Sbjct: 59 PEMNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNK 118 Query: 120 ALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 ALE+S + + +V +S M R+ E ++VA++D++VLI G+SGTG Sbjct: 119 ALERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTG 178 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 K++ +AIH S R S PF+A+NC A+PE +LESELFG+ +GAFT A NR GLFQ A Sbjct: 179 KDLACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHK 238 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT+FLDEIGD+ +Q KLLRVLQE+ ++PLG + + ++VR++++T+RDL + RGEF Sbjct: 239 GTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEF 298 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDL+YRLNV+ + +P+L ER EDIPLL NHL+ + ++ + + + + A W Sbjct: 299 REDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALV----EQALEGENTALPTF--------VEARNQ 397 PGNVR+L NVI + + I V P+ EA Sbjct: 359 PGNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRG 418 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F Y +L T+GNV+HAA++ G R +LL R+ + ++ ++ Sbjct: 419 FHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRRYGIRSDAYR 464 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 175/441 (39%), Positives = 253/441 (57%), Gaps = 4/441 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + +L VDDDP +L++L +RL S GY VVTA GAE L VL + V LVISD+RM Sbjct: 5 AQTRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPG 64 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI---- 117 MDGM+L E+++ +P+I LTAHGSIP AV A + G +LTKP D L + Sbjct: 65 MDGMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVF 124 Query: 118 DDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A A + +V +S M L VA DV+VL+ G+SGTGKE+ A I Sbjct: 125 ARAAGNDATRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLI 184 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR + P + ++CG+ P LLESELFGH +G+FT AV +++GL + A GTLFLDEI Sbjct: 185 HRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEI 244 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++ +Q++LLR L+ ++R +G R+I ++ R+I+AT+ D+ + +A G FREDL YRL Sbjct: 245 GNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRL 304 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV++ +P L ER EDIP+LA H RQ + M LM WPGNVRQL Sbjct: 305 KVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 N +E V L + V++ ++ L G+ + ++ E + + L+ A Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKGPDRAGESLSLDESEKTAIVRALEQANWVQKAA 424 Query: 418 ARMAGRNRTEFYKLLSRHELD 438 A + G +R + ++ ++ Sbjct: 425 APLLGVSRRALNYKIQKYGIE 445 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 615 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 170/467 (36%), Positives = 266/467 (56%), Gaps = 27/467 (5%) Query: 1 MSHK----PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISD 56 M+ K +L+VDD+ + L + S+ A +G + L+ ++ + L+ D Sbjct: 1 MTTKETMHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLD 60 Query: 57 LRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 + M ++DG++ +I++++ V+I+TAHGS AV A ++G + ++ KP + + L Sbjct: 61 INMPQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRII 120 Query: 117 IDDALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166 +ALE+ A + ++ +S +M + ++ V +DV+VL+ G+S Sbjct: 121 TRNALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGES 180 Query: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 G+GKE+ A IH S R + PFI +NC A+PE L+ESELFGH RG+FTGA R G F+ Sbjct: 181 GSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEM 240 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 A GT+ LDEIGDM Q KLLRVLQE+K LG + ++VRIISATHRDL + + Sbjct: 241 ANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEE 300 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 G FREDLYYR+NVV++KIP L +R EDIPLL N ++ +++H V + S DAMK+L Sbjct: 301 GRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSA 360 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---------TFVEA--- 394 +WPGN+RQL N IE + LT++ V+ + + + + E +F EA Sbjct: 361 YNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKI 420 Query: 395 -RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 FE +++ K L+ GN++H A +R + + +L+ + Sbjct: 421 LIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIKDLQLNKD 467 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 615 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 177/450 (39%), Positives = 269/450 (59%), Gaps = 24/450 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ G++ L EG V+ A GAEGL +L + +V ++++DL M GM L Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + V P V+++TA+G++ AV A ++G + F+TKP+ + + + + +ALE+ + Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 128 TDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + R A ++ S R ++ A SD +VL+ G+SGTGKE+ A+++H Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R KPFIAINC A+PE +LE ELFG+ +GAFTGA S+REG F+AA GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSN-RDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 +MP +QVKLLRVLQE ++ LG + R I++R+I+AT+ +L KA+ G FREDLYYRL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+S+ +P L ER +DIPLL H L+ A+++ F+ + DA+ RL +WPGNVR+L Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP--------------TFVEARNQFELNYL 403 N +E+ V L+ V+ +A + + AL + E+ + Sbjct: 378 NAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAVI 437 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 + L+ TKG+ AA++ G Y+ L Sbjct: 438 HETLRHTKGDKRLAAKLLGIATRTIYRRLE 467 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 615 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 164/445 (36%), Positives = 242/445 (54%), Gaps = 21/445 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+ DDD + L+ +GY V A G + L + V +VI+D+ M ++G Sbjct: 3 SARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRVNG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++ +++ ++P + I +A + + G F +L KP + + L + LE Sbjct: 63 LEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQ 122 Query: 125 APATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 A I+ S ML L E VA SD +VLI G+SGTGKE+ A Sbjct: 123 ALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVA 182 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH+ S R +K F+ +NC A+P+ LLESELFGH +G+FTGAV+ R G F+ A+ GTLFL Sbjct: 183 RAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFL 242 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDM LQVKLLRVLQ +++ P+G+ R ++VRII+AT+++L +A FREDLY Sbjct: 243 DEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLY 302 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL+V+ + +P L ER DIPLL N+ L + + V++F + M L WPGNVR Sbjct: 303 YRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGNVR 362 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----------FVEARNQFELNYL 403 +L N++E+ V L S I+ + + G +A + A FE + Sbjct: 363 ELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQLI 422 Query: 404 RKLLQITKGNVTHAARMAGRNRTEF 428 + L+ T GN AA + RT Sbjct: 423 LQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 173/445 (38%), Positives = 251/445 (56%), Gaps = 16/445 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+DD + +L L G+ V A G+ + VD+VI+DLRM ++DG Sbjct: 20 TVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDLDGFD 79 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +I P+I++TA GSI A+ A + G ++TKP + D L ID AL + A Sbjct: 80 LIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALAERAL 139 Query: 127 ATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + I+ S M LL VA S SVL+ G+SGTGKE+ A+A Sbjct: 140 RRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARA 199 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR F+A+N A+PE L+ESELFGH +GAFT A ++ GLF A+GGT+FLDE Sbjct: 200 IHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDE 259 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +M APLQ KLLR LQE+++RP+G+ R ++VR+++AT+RDL + MA G+FREDLYYR Sbjct: 260 IAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYR 319 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFV-RAFSTDAMKRLMTASWPGNVRQ 355 LNV+ +++P L R +DI LA H L A+ R P + + + L + WPGNVR+ Sbjct: 320 LNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPGNVRE 379 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGEN-----TALPTFVEARNQFELNYLRKLLQIT 410 L NVIE+ + L +I+ + + +A Q E ++ ++L+ Sbjct: 380 LANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLEREFIERILKEE 439 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 GN T A+ G +R Y+ L + Sbjct: 440 GGNKTRTAQRLGLDRKTLYRKLDEY 464 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 155/450 (34%), Positives = 259/450 (57%), Gaps = 19/450 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+P +L LG LT EG+ VVTA +G E ++ L++ DL++ D+ M MD Sbjct: 1 MFPSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ +++K P +PV+++T HG+I AV AT+ G + F+ KP+ + + I++AL Sbjct: 61 GLETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNF 120 Query: 124 SAPATDERWRE-------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + +I SP ++ + Q VA +D VLI+G++GTGKE+ A+ Sbjct: 121 RRLEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVART 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH+ S R+ P + +NC ++ ++ +ESELFGH +GAF GA + G F+ A GTLF DE Sbjct: 181 IHHLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +GDM Q ++LRVL+ +K + +G R I ++VR+I++T+++L + + +G FREDLYYR Sbjct: 241 VGDMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP-FVRAFSTDAMKRLMTASWPGNVRQ 355 LNVV + +P L ER +DIP L R+ A + S +A++ LM WPGNVR+ Sbjct: 301 LNVVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRE 360 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENT-----------ALPTFVEARNQFELNYLR 404 L N++E+ V T + + + A + + ++ +A+ FE+ Y++ Sbjct: 361 LRNLVERLVISTKASHVDIRHIPPAYKDCAQEAIQDCGLDVFEVDSYKDAQKAFEIAYIQ 420 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 + L + A G +++ K+L + Sbjct: 421 RQLVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 176/469 (37%), Positives = 258/469 (55%), Gaps = 33/469 (7%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 LL+VDD + L L +E Y+V A +G E L L +DL+++DL+M+ M Sbjct: 8 PTRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPM 67 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ L +V P + VI++TA GSI AV A + G + ++TKP + L ++ ALE Sbjct: 68 DGLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALE 127 Query: 123 QSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 ++ D A+V RS M L + VAQSD +VLI G+SGTGKE+ Sbjct: 128 RARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKEL 187 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H S R ++ F+ +NC A+ E LLESELFGHA+GAFTGAV +R GLF+ A+GGTL Sbjct: 188 VARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTL 247 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 F+DE+ + Q KLLR LQE +VR +G + + ++VRI++AT+RD+ + FR+D Sbjct: 248 FIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQD 307 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV+L++P L ER ED+P LA H L +A R P + S A+ LM+ +PGN Sbjct: 308 LYYRLNVVALRVPPLRERLEDVPALAEHFLERANAR-SPNPKRLSAAAVSHLMSYGFPGN 366 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE----------------------QALEGENTALPT 390 VR+L N++EQ AL + AL +A PT Sbjct: 367 VRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGPT 426 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + + E + + + L+ ++ A G + T ++ + R L Sbjct: 427 LAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKRLNLRP 475 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 149/451 (33%), Positives = 250/451 (55%), Gaps = 15/451 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A++L++DD+ + + L EGY+ A + +G + L D++ D+ + + DG Sbjct: 1 MANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + EI+K P + V+I++ HG+I +AV A + G + FL KP+ + + + ++ Sbjct: 61 IDGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKF 120 Query: 125 APATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D R ++ S +L L ++ +A ++ V+I G++GTGKE A+ I Sbjct: 121 QLMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLI 180 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R+ F+ INC A+P +LLESE+FGH +GAFTGA ++G F+ + GT+FLDEI Sbjct: 181 HMLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEI 240 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM Q KLLRVL+ +G N + + R+I+AT+++L ++ G FREDLYYR+ Sbjct: 241 GDMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRI 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV L +P L ER +DIPLL NH +++A + ++ + M + WPGNVRQL Sbjct: 301 NVVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLK 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNYLRKLLQI 409 N++E+ V L+ V+S ++G++ A+ FE +Y+ +LQ Sbjct: 361 NLVERMVVLSEDSVMSLDDAPDFIQGKHFPQKSYDVEYEYPLKHAKENFEKHYILNILQN 420 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 N++ +AR+ RT ++ + + ++ + Sbjct: 421 NDWNISRSARILEIERTYLHRKIKAYGIEKS 451 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 612 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 176/461 (38%), Positives = 250/461 (54%), Gaps = 29/461 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS HL ++DDDP + +L GY V E E R L+ + D +ISD+RM Sbjct: 1 MSQAQ-HLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG+ L +I++ P +P++I+TAH + AV+A + G F +L KP D + + A Sbjct: 60 GTDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKA 119 Query: 121 LEQSAPAT----DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + ++ I+ S M + ++ S VSVLI G++GTGKE A+A Sbjct: 120 MAHRSKPEVRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVARA 179 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR+ KPFIA+N A+P L+ESELFGH RGAFTGA R+G F A+GGTLFLDE Sbjct: 180 LHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLDE 239 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IGDMP +Q +LLRVL E + P+G+++ + +NVR+I+ATHRDL +A+A EFREDLY+R Sbjct: 240 IGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYHR 299 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV+ L++PAL ER +DIPLLA + L+Q+A + + S A+ +L WPGNVRQL Sbjct: 300 LNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQL 359 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA---------------------- 394 NV + + +S + L ++ L Sbjct: 360 ENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNMT 419 Query: 395 --RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 E LR L+ G+ AA G R + L Sbjct: 420 PIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 160/452 (35%), Positives = 245/452 (54%), Gaps = 17/452 (3%) Query: 1 MSHK--PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 MS P +L++DDD L + + L G+S A G G+ L +E D+V++DL+ Sbjct: 1 MSAPAEPLQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLK 60 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M ++ G+++ ++++P V ++T + AV A ++G +L KP+D L I+ Sbjct: 61 MADLHGLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIE 120 Query: 119 DAL-------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 ++ E ++ E +V SP M R+L+ + A S SVLI G++GTGK+ Sbjct: 121 NSAKRVGTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKD 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A+H PR +KPF A+NC L E LL+SE+FGH +GAFTGA R G F+ A GGT Sbjct: 181 LAARALHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGDMP LQ KLLR L+ +V +G+N + ++VRII+AT++DL K + G FR+ Sbjct: 241 LFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQ 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL V ++K+P L E EDIP L +H L++ A R V + K WPG Sbjct: 301 DLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------FVEARNQFELNYL 403 NVR+L N++ + L ++ + + ++ E Y+ Sbjct: 361 NVRELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYI 420 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 K L +T GN AAR+ + Y+ + Sbjct: 421 EKALDLTGGNREEAARLLNISERTLYRKIQEW 452 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 165/455 (36%), Positives = 253/455 (55%), Gaps = 39/455 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L +A+SG E L++L + VD++I D+RM + G++ Sbjct: 22 SILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLE 81 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 EI+K+ P V+I+TA+G+ A+ A + G + ++ KP + L I ALE S Sbjct: 82 TLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKL 141 Query: 127 ATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ +S M ++ + VA ++ +VLI G+SG+GKE+ A+ Sbjct: 142 TKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVAR 201 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AI+ S R +KPFIAINC A+PE LLESELFGH RG+FTGA++ R G F+ +GGT+FLD Sbjct: 202 AIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLD 261 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+MP Q K+LRVLQE + LGSN I +VRII+AT++DL A+A+ EFR DL+Y Sbjct: 262 EIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFY 321 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNVV + +P L ER EDIP L +H L + S+ AM+ L+ WPGN+R+ Sbjct: 322 RLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRE 381 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTA------------------------LPTF 391 L NVI++ + L +S I + + + ++ Sbjct: 382 LENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSDL 441 Query: 392 VEARNQFELNYLRK----LLQITKGNVTHAARMAG 422 + R + + L + +L+ +G+ + A R+ G Sbjct: 442 RDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 158/448 (35%), Positives = 267/448 (59%), Gaps = 13/448 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A++L+V+D+ L +T G+ VV SG E L+ + +++ +LV++DL + M+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++L I+++QP VI++T H S+ AV A Q+G S++ KP++ D L + +ALE+ Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 A + + +V +S +++L + +A D +VLI G++GTGKE+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ IH SPR+ + F+AINCG +L++ ELFGH R AFTGA ++G+ + A GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 DE+ ++P +QVKLLRVLQER +G ++I +++R++SAT+ DL + + G FR+DL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV+L P L + EDIP+L H L + + + S + + LM S+PGNV Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQ-SIDTISQETLDILMNYSFPGNV 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 R+L N+ ++ +AL V S L+ + + + P + + E +++ K++ T GN Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEIRNIDRNKP--LRTLEEVERDHIEKVMLATNGN 419 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDAND 441 T AA++ G +R ++ + R L+ ++ Sbjct: 420 KTQAAKILGIDRVSLWRKMKRLGLEKDN 447 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 163/452 (36%), Positives = 258/452 (57%), Gaps = 23/452 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL+VDD+ + + + G+S TAE+ + ++L+ VD+++ DLR+ + G++ Sbjct: 14 NLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGLE 73 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 +I++ +P VI++T + ++ AV A + G F ++TKP + D L +D Sbjct: 74 ALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLKL 133 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 T+ R +V R+P M RL A S VLI G+SGTGKE+ A+A Sbjct: 134 TTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARA 193 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H KPFI ++CG+L L+ESELFG+ +GAFTGA +++GL A+GGT+FLDE Sbjct: 194 VHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDE 253 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P LQ KLLR LQE+++RP+G R + INVRI++AT+RDL +A+ +G FR DLY+R Sbjct: 254 IGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFR 313 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNV++L+IP L +R +DIPLL H L + R S +A+K ++T WPGNVR+L Sbjct: 314 LNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNISDEALKLMLTYDWPGNVREL 372 Query: 357 VNVIEQCVALTSSPVISDALVEQALEG------------ENTALPTFVEARNQFELNYLR 404 + +++ ALTS P I+ + ++ A + + E + Sbjct: 373 EHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAIL 432 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 + ++ G+ AAR+ G +T Y+ L + Sbjct: 433 EAIERLHGDKLEAARLLGIGKTTLYRKLKEYG 464 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 174/467 (37%), Positives = 251/467 (53%), Gaps = 31/467 (6%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DD+PG+L L L +V TA + +GL + RE+ D VI D+R+ +M G Sbjct: 1 MPKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + F I++ P +PVI++TAHGS A+ AT++G F +L KP+D L + + A E Sbjct: 61 LDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMR 120 Query: 125 A------------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 P D E IV + P ML + + +A DV VLI G+SGTGKE+ Sbjct: 121 LAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A++ SPR+ KPF+AINC A+P+ LLESELFGH +GAFTGA R G F+ A+GGT+ Sbjct: 181 VARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTV 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDMP Q K+LR+LQ+++ +G N + +VR+I+AT+RDL + +FRED Sbjct: 241 FLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L YRLN ++ +P L +RT DI L +H + A + K VR A+ L + WPGN Sbjct: 301 LLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-------------------FVE 393 VR+L N + V VI+ + +L G + + Sbjct: 361 VRELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQ 420 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L +L+ GN AA G +RT L L Sbjct: 421 VTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQTLGLGVE 467 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 259/465 (55%), Gaps = 31/465 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K +L+VDD+ + L L E + TA +G E +++ VD++++D++M Sbjct: 1 MNKK--KILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMP 57 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M+G++L +++ ++P P I+++A+ V A + G + F+TKP D L + A Sbjct: 58 GMNGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTA 117 Query: 121 LEQS--------------------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV 160 ++ S A + I+ +S M +L + +A + SV Sbjct: 118 VQASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSV 177 Query: 161 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNR 220 LI G++GTGKE+ A+AIH AS R+ K FIA++C AL L ESELFGH +G+FTGA R Sbjct: 178 LITGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKR 237 Query: 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDL 280 G F+AA+GGTLFLDEIG++ A QVKLLR+L+ R +G N + + R+I+AT+RDL Sbjct: 238 IGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDL 297 Query: 281 PKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDA 340 K + GEFREDLYYRL+V++L++P L +R EDIP L H L + ++ V+ F+ DA Sbjct: 298 RKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADA 357 Query: 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQAL------EGENTALPTFVEA 394 M RL T WPGNVR+L NV+E+ L+ + + + E + +A Sbjct: 358 MARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKA 417 Query: 395 RN--QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + E + K L+ + N T AA G +R ++ L + + Sbjct: 418 LDVAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQFGI 462 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 174/453 (38%), Positives = 248/453 (54%), Gaps = 19/453 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +LLV+D+ + + L+ GY V A++ L+R DLVI+DLR+ M Sbjct: 2 TPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMS 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM+L I+++ PG VI++TA + AV A + G F FL KP D L A++ Sbjct: 62 GMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRF 121 Query: 124 SAPATDERWREA------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + SP ML++ ++ R +A + V VL+ G SG+GKE+ A A+ Sbjct: 122 LDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGAL 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R +PFI INC ALPEQLLESELFGH +GAFTGA R G F+AA+GGTLF DE+ Sbjct: 182 HRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEV 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP PLQ KLLRVL++++V P+G N +NVR + AT R+L +A+A G FREDLYYR+ Sbjct: 242 GEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRI 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NVV + +P L ER D+ LL LR+ H+ S A L+ +PGNVR+L Sbjct: 302 NVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVRELR 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPT------------FVEARNQFELNYLRK 405 N +E V L + I + + + ++P E +FE + + Sbjct: 361 NAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIME 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ T G AA + G +R + + L +D Sbjct: 421 ALERTGGRKIQAADLLGISRKQLWLKLKELSID 453 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 172/457 (37%), Positives = 255/457 (55%), Gaps = 16/457 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S K L+++DD +++ L Y V S A+ + + R D +++DLRM Sbjct: 3 SAKKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DG++ Q P +PVI++TA ++ AV A + G F +L KP + + L + A+ Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + IV +S M L+ +A SDV +LI G+SGTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A H S R P++A+N A+PE L ESELFGH +GAFTGA R G F AEGGT Sbjct: 182 LLARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G +P LQ KLLRVLQ+ + P+GS + NVR+++AT+ DL + + G+FRE Sbjct: 242 LFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFRE 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL++RL VV L++P L ER EDIPLL HL+++ A R +AM+ L+ WPG Sbjct: 302 DLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPG 361 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT-----FVEARNQFELNYLRKL 406 N+R+L + IE+ + L I+ A + L A + AR+ +E +L + Sbjct: 362 NIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLEDV 421 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 L+ G V AA ++G +R+ FY+ L+RH L D K Sbjct: 422 LREAGGQVARAAELSGLHRSTFYEKLARHGLADKDAK 458 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 159/460 (34%), Positives = 251/460 (54%), Gaps = 25/460 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 H +L+VDD+ LL RL +GY+ + A G +++ E + +++ DL+M M Sbjct: 2 HTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+ ++ P + +I++T HG+I A+ A ++G + +LTKP + + L I A+E Sbjct: 62 DGLSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVE 121 Query: 123 QSAPATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + + IV SP + +L A+ VA +D VL+ G+SGTGK+ Sbjct: 122 KQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKD 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ I+ S R SK F+ IN GA+PE +LESELFGH +GAFTGA + ++GL + A GT Sbjct: 182 VIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+GD+P PLQVKLLR L+ + R +GS ++VRII+AT+ DL K + G FR Sbjct: 242 LFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRS 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+RL+V+ + IP L +R+EDI L+ L + ++ V+ S A L+ S+PG Sbjct: 302 DLYFRLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPG 359 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA------------RNQFE 399 NVR+L ++IE+ V L I D + + + E Sbjct: 360 NVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAFLLKNVE 419 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 +++ +L +++ N T A G + Y+ + +EL Sbjct: 420 REHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIEEYELRP 459 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 611 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 172/454 (37%), Positives = 245/454 (53%), Gaps = 15/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A++ VDDDP +L + V + L + DL+I+DL M Sbjct: 1 MSEA-ANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM L + I+ V +PVII+T + S+ +A+ A + G F+ KP D D L I+ Sbjct: 60 GLSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERT 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE + R + +V M + VA +V+I G+SGTGK Sbjct: 120 LEGERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH P KPF+ I+CGA+ + LLESELFGH +GAFTGA + GL + A GG Sbjct: 180 ELVARAIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEI ++ +QVKLLRV+QE++V +GS R I I+VR I+AT+R+L + GEFR Sbjct: 240 TVFLDEICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DLY+RLNVV + +P L R EDIP L + + A+R+ V F A++RL T WP Sbjct: 300 HDLYHRLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA----LVEQALEGENTALPTFVEARNQFELNYLRKL 406 GNVR+L N++E+ +AL PV+ A AL E Y+ K Sbjct: 360 GNVRELRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLATLERRYILKT 419 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 LQ GN AR G N++ ++ L ++E +A+ Sbjct: 420 LQRLDGNREQTARALGINKSTLWRKLQQYEQEAD 453 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 611 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 254/450 (56%), Gaps = 13/450 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ L + L EG+ V A GA LR+L ++ +LV++D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 E+DGMQL + I++TA G + AV A + G + +LTKPVD L + A Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 LE + ++ S M +++ A VAQSDV+VLI G+SGTGKE Sbjct: 121 LELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ IH S R KPFI +NC AL E L+E+ELFGHA+G+FTGAV+++ G F A+GGT Sbjct: 181 LVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIGD+ A Q LLRVL++ R +G +NVR+I+AT++ L +A+A G+FRE Sbjct: 241 LFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFRE 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRL +V + +P L ER EDIPLL + L ++HK R ST+A++ WPG Sbjct: 301 DLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA----LPTFVEARNQFELNYLRKLL 407 NVRQL NVIE+ V + + V+ + L + + + E +R+ L Sbjct: 361 NVRQLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVRVGMTLAEAEKLLIRQTL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N AA+ G +R L ++ L Sbjct: 421 SQLTSNREEAAQALGISRRTLQYKLKQYGL 450 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 168/475 (35%), Positives = 243/475 (51%), Gaps = 41/475 (8%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+V+D+ + LL V A + AE L RE+ DL++ D+R+ + DG + Sbjct: 5 KILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDGDGQK 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 ++ + V+++T +GS+ AV + G F ++ KP + + A Sbjct: 65 FLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQTYRQL 124 Query: 127 ATDERWREA--------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 R +V RSP M+RL + VA +D +VLI G+SGTGKE+ A+ + Sbjct: 125 LRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFY 184 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 SPR S+ FI +NC A+ E L+ESE FGH RGAFTGA REG F+ A GTL LDE+ Sbjct: 185 RRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVS 244 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++PA LQ KLLRVLQER+ +G +R I +NVRII+ ++RDL + + +GEFR+DLYYRLN Sbjct: 245 EIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLN 304 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V + +PAL ER EDI LLA+H LR+ A +H V F+ A L+ WPGNVR+L N Sbjct: 305 VFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQN 364 Query: 359 VIEQCVALTSSPV--------ISDALVEQALEGENTALPTFVE----------------- 393 +E+ V L+ + + + L E P Sbjct: 365 TVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTV 424 Query: 394 --------ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 ++ E +R L+ T GN T AA G + L + L + Sbjct: 425 TDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQEYRLAGD 479 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 166/456 (36%), Positives = 254/456 (55%), Gaps = 19/456 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM-- 59 + +P +L+ DD +L+ L L L +G +VVT++S A L L E VDLV+ DL Sbjct: 19 AARPPCVLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYAR 78 Query: 60 ---DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQA 116 +G+ L I+ +PV+++TA GS+ AV A + G ++ KP D L Sbjct: 79 DTTSGQEGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLAT 138 Query: 117 ID------DALEQ-SAPATDERWRE-------AIVTRSPLMLRLLEQARLVAQSDVSVLI 162 + AL++ + + A+V+ S M + VA S +VL+ Sbjct: 139 LRTQLELRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLV 198 Query: 163 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREG 222 G+ GTGKE+ A+ IH S R+ + F+A+N G L E + ESELFGH +GAFT A S+R G Sbjct: 199 TGEHGTGKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIG 258 Query: 223 LFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPK 282 F+ A+GGTLFLDEIG+MP Q KLLRVLQ ++ P+GS++ ++VR++SAT+ DL + Sbjct: 259 CFELADGGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSR 318 Query: 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMK 342 A+A G FREDL YRLN V +++P L ER EDIPLLA H L + R+ S++A++ Sbjct: 319 AVAEGRFREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALE 378 Query: 343 RLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNY 402 L+ +WPGNVR+L + +E+ + + S ++ + G + E Sbjct: 379 ALLAYAWPGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGREGMARLEEMTLEEVERYL 438 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + + L +GNV+ AA+ G +R+ Y+ L + + Sbjct: 439 IERALARHEGNVSEAAKGLGLSRSALYRRLQYYGIK 474 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 152/443 (34%), Positives = 238/443 (53%), Gaps = 14/443 (3%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 L+VDD+P + + +T G A G E + ++ D++ D+RM M GM++ Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPAT 128 I+ V+++T + A + G F +L KP D + I A + SAP Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 129 D-----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 ++ SP+M L + VA +D +VLI G+SGTGKE+ A+AI Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R F+ ++C AL E LLESELFGH +G+FTGA+ +++GLF+ A GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ +Q KLLRV+QER+ +G I +++RI+ A++RDL A+A +FREDL+YRL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 +V+ + +P L ER +DI L N+ + + + S +AM L++ +WPGNVR+L Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGNV 414 N IE+ + L VI + Q + + L +F + + E +Y+R +L T G + Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGI 430 Query: 415 THAARMAGRNRTEFYKLLSRHEL 437 AA + G NR + ++ L Sbjct: 431 QKAAGILGINRKTLSMKMKKYGL 453 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 167/453 (36%), Positives = 257/453 (56%), Gaps = 16/453 (3%) Query: 1 MSH-KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ K A +L+V+DD L +LL + L GY V A G +GLR E ++V+ D++M Sbjct: 4 MNKGKGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKM 63 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 +DG++ +++ +I+ T HGSI AV + G + +LTKPV D L ID Sbjct: 64 PGVDGIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDK 123 Query: 120 ALEQSAPATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 A E++ + +V RSP ++++L+ R ++ VLI G+SGTGK Sbjct: 124 AYEKNRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGK 183 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ ++A+H+ASPR KPF+ +NCG L ESELFGH +GAFTGA R GLF+ A+ G Sbjct: 184 ELISRAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTG 243 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLF+DE+ + P +QVKLLRVL+ R +G N DI ++VR + A++++L + + RGEFR Sbjct: 244 TLFMDEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFR 303 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+R+N++ + +P L ER EDI LA ++ AA R + +AM L SWP Sbjct: 304 EDLYHRINLLPINLPPLRERPEDILPLAYFFMKSAAGRED-ENWEITEEAMAALTAYSWP 362 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQA-----LEGENTALPTFVEARNQFELNYLRK 405 GNVR+L N I + L + I+ L+ + + + E +++ + Sbjct: 363 GNVRELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWVVERDHIER 422 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +L+ +GN + AA++ +R Y L R+ LD Sbjct: 423 VLEQVEGNKSRAAKILEIDRKTLYTKLERYGLD 455 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 185/468 (39%), Positives = 275/468 (58%), Gaps = 25/468 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K +LL+D++ GL +++ L GY V S + + + DLVI+D++M Sbjct: 1 MTDKQ-RILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+++ +++ +PVII+TA+ ++ ++ A ++G + LTKP + D L + +A Sbjct: 60 GMTGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNA 119 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L+Q+ + R I+ S + +L++ VA D S+LI G+SGTGK Sbjct: 120 LQQAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ AQA+H S R F+A+NCG LPE +LESELFG+ +GAFTGA NR+GL +AA+GG Sbjct: 180 ELIAQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+G++P +Q LLR LQE++ R +G ++VRIISAT+ DL + + G FR Sbjct: 240 TLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRLNVV+L +P L +R +DIPLLA H + ++ V+AF DAM+ L T WP Sbjct: 300 EDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDA------LVEQA--LEGENTALP------TFVEARN 396 GN+RQL NVIE C+A+ +S IS + + + A P F EA Sbjct: 360 GNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALE 419 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 +FE + LR LL+ G V AAR AG N Y+ + R+ L ++ + Sbjct: 420 RFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKRYGLKKEEYAD 467 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 158/449 (35%), Positives = 256/449 (57%), Gaps = 11/449 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +L++DD+ L L + EG++V+ A + +++ +E++D+V+ D+++ + Sbjct: 1 MPGTVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ I++ P + +I+LTA+G+IPD V A + G F +LTK D + + ++ ALE+ Sbjct: 61 GVDYARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEK 120 Query: 124 SAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + I+ S + +EQA VA +D +VL+ G++GTGKE+F Sbjct: 121 VQLQKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVF 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 AQAIHN S RN KPF+A+NC A +LLESELFG+ GAFT A +++GL + A GT+F Sbjct: 181 AQAIHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+MP LQ KLLRVL+ + +G + +NVRII+AT+RDL + +G FREDL Sbjct: 241 LDEIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV ++ +P L ER +DIP LA + + + + + + +++L W GN+ Sbjct: 301 YYRLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-ARNQFELNYLRKLLQITKG 412 R+L NV+E+ V + ++ + L+ + A E ++ ++L TK Sbjct: 361 RELKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFDLASVEKLHIIRVLYHTKN 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAND 441 N T AAR+ Y+ + + L+ Sbjct: 421 NKTEAARLLNIGLATLYRKIEEYGLNHQQ 449 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 161/454 (35%), Positives = 247/454 (54%), Gaps = 12/454 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ K A +L+VDD+ L L G+ ++ L + + DL++SD+ M Sbjct: 1 MTAK-AEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 DG+ L +++ PV++++ I AV AT+ G FL KP+ D L +++A Sbjct: 60 GRDGLTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENA 119 Query: 121 LEQSAPATDERWREAIVTRSP------LMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L+ T+ R + V + M R++ Q VA S+ V I G++GTGKE+ A Sbjct: 120 LKLKRLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H SPR + PFI +NC A+P +L+ESELFGH +G+FTGA G F+ A GTLFL Sbjct: 180 RTLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP +Q KLLRVL+E +V +G ++ I ++VR+I ATHR+L + G+FR+DL+ Sbjct: 240 DEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLF 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +R+ V L +P L R EDIP+L H Q ++ F+ +A++ L SWPGNVR Sbjct: 300 HRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVR 359 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALE-----GENTALPTFVEARNQFELNYLRKLLQI 409 ++ NV+E+ + L + + A VE AL +T Q+E + LQ Sbjct: 360 EMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYEREVILAELQR 419 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 K ++T+ A+ G R+ YK +D + Sbjct: 420 QKHHITNTAKALGLERSHLYKKCQALGIDLRAVR 453 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 160/506 (31%), Positives = 251/506 (49%), Gaps = 75/506 (14%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE-KVDLVISDLRMDEMD 63 + +L+VDDD + LG L S GY + TA SG EG+ + K DL++ D+RM + Sbjct: 7 MSTILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGIS 66 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ ++ + ++++TA G+ A+ A + G + ++ KP D D + + + A+ Sbjct: 67 GIETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISS 126 Query: 124 SA-PATDERWR---------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 S + R+ E IV SP M + + VA SD +VL+ G+SGTGKE+ Sbjct: 127 SQDLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELI 186 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ I+ S R+ PF+A+NC A+P+ L+ESELFGH +G+FTGA + R G F+ + GT+F Sbjct: 187 AKCIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIF 246 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM Q K+LRVLQE +++ +G I ++VR+I+AT++DL K + EFREDL Sbjct: 247 LDEIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDL 306 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV +++P+L ER ED+P + + +L+ + K V S DA+ L+ WPGNV Sbjct: 307 YYRLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNV 366 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG------------------------ENTALP 389 R+L NV+ + + I + + G E A Sbjct: 367 RELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQASA 426 Query: 390 TFVEARNQ-----------------------------FELN------YLRK-----LLQI 409 +++ + E + + + Sbjct: 427 AETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIGE 486 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRH 435 T GN AA + G R K L + Sbjct: 487 TGGNQARAAEILGITRNTLKKRLDEY 512 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 173/454 (38%), Positives = 255/454 (56%), Gaps = 22/454 (4%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +L+VDD+ + L +L EGY V + ++ EG+ ++ E+ D+V++DLR+ M+ Sbjct: 1 MSNKILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMN 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM+L EI+ P + V+I+TA+G++ AVAAT++G + ++ KP D L + AL+ Sbjct: 61 GMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQH 120 Query: 124 S-------APATD---ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + E IV S M +L+E + ++ D ++LI G+SGTGKE Sbjct: 121 KNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEKI 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A A+H S R PFI ++C AL ++LESELFGH +G+FTGA+ R G F+ A GG++F Sbjct: 181 AGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSIF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LD++ D+P +QVKLLRV+QER +G + + INVRII AT +DL +GEFREDL Sbjct: 241 LDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV + IP L ER +DIP L N+ L++ RH+ + S + + LM +WPGNV Sbjct: 301 FYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEG------------ENTALPTFVEARNQFELN 401 R+L NVIE VA + S I+ + L+ NT + + E Sbjct: 361 RELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEVEKR 420 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + Q T GN A + G RT L R Sbjct: 421 LIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVRL 454 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 151/449 (33%), Positives = 249/449 (55%), Gaps = 19/449 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DD+P + L L + Y +GL ++ +E +D+V+ DL++ ++DG Sbjct: 1 MKRILIIDDEPSICSSLQFALEDD-YETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDG 59 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ EI++ +P VI++TA+G+I ++V A + G +S+LTKP+ + L+ ++ AL Sbjct: 60 LEVLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYK 119 Query: 125 APATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + E ++ +S M ++ V D SVLI G+SGTGKE+ A Sbjct: 120 KLNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH + R + F +NC A+PE LLESELFG+ +GAFTGA + +EG FQ A GT+FL Sbjct: 180 RAIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGDMP LQ KLLRVLQ+++V LGSN+ ++VR+I+AT++ L + + G FREDLY Sbjct: 240 DEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLY 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 +RL+V+ + +P L ER ED+P L H L + ++ F +DA + L+ +PGN+R Sbjct: 300 FRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIR 359 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPT--------FVEARNQFELNYLRKL 406 +L N++E + + I + + + + E +++ Sbjct: 360 ELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKELEKDFILAT 419 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRH 435 L+ + A M G + L ++ Sbjct: 420 LKHNDNHRKKTAEMLGISERGLRDKLKQY 448 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 171/458 (37%), Positives = 261/458 (56%), Gaps = 22/458 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDDDPG K+ LT EG+ V+ A SGAE L L ++SDL+M ++DG+ L Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + ++P +PV+++TAH ++ AV A ++G +LTKP+ D L + A+ Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 128 TDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D IV +P M + VA +D +VL+ G++GTGKE+ A+AI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H SPR +PF+A+NC A+P+ L+ESE FGH +GAFTGAV+ R G F+ A+G TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GD+ +Q KLLRVLQE+++ +G+ + ++VRI++AT+RDL + G FR+DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+ L++P L ER +D+P L H LR A+R+ D + WPGNVR+L Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 358 NVIEQCVAL---------TSSPVISDALVEQALEGENTALPTFVEA---RNQFELNYLRK 405 N+ E+ V + + ++ A +T+LP +FE YL + Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRLVERFEREYLTR 1041 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 LL+ +G + AR AG Y+ + + L +D++ Sbjct: 1042 LLKERRGRIGEVARAAGIAERNLYEKMKAYGLSRDDYR 1079 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 158/453 (34%), Positives = 254/453 (56%), Gaps = 15/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L++DD+ + GY + A SG GL+++ E++D+VI+DL M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + GM++ ++ P +I++T +G++ AV A Q+G +FL KP++ + L I+ Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LEQSAPAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 +E+ ++ I+ S M ++L ++ ++ +VLI G+SGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IHN S R P + +N A+PE +LESELFGH +G+FTGA+ R+G F+ A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T FLDEIGDMP Q KLLRVL++ + +GSN I+++VR+I+AT+++L + G+FR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLY+RLNV+ +K+P L ER EDIPLL + +R+ + + + + +A K L+ WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP-----TFVEARNQFELNYLRK 405 GN+R+L N IE V +T+ + + +E ++ +P E+ ++ Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAEIELIKC 420 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L GN AARM G Y+ L + L Sbjct: 421 TLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 152/434 (35%), Positives = 245/434 (56%), Gaps = 12/434 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DD+P + L ++ G+ ++ L +N L+I+D++M +MDG Sbjct: 1 MKSVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +QL EI+K PVI++T +G++ DAV A + G ++ KP + L + + Sbjct: 61 LQLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLI--- 117 Query: 125 APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 ++ IV S M R+LE + +A++D++VL+ G+SG GKE+ A+ IH SPR+ Sbjct: 118 ------PEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRS 171 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 ++PF+AINC A+ E LLE+ELFGH +GAFTGA + G F+ A GT+ LDEI +M L Sbjct: 172 NQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRL 231 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLRV+QE+++ +G + I I+VRII+ T++DL + + +G FREDL+YR+NV ++I Sbjct: 232 QAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRI 291 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER++DI LA L++ + + + D K L+ SW GNVR+L N I + Sbjct: 292 PPLRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELENFIYRSA 350 Query: 365 ALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRN 424 L+ ++ E + P E + L+ T+GN T AA++ G + Sbjct: 351 VLSQDGILRLH--EDEINLFEEEKPVKAGKLKDAERELIVDALKKTEGNRTKAAKILGIS 408 Query: 425 RTEFYKLLSRHELD 438 ++ + L Sbjct: 409 VRTLRNKINEYGLK 422 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 165/474 (34%), Positives = 255/474 (53%), Gaps = 35/474 (7%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +L++DD+ + + LT Y + A +G + + ++ +E DLVI+DL+M+ Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 M G+++ + ++ P V+++T + S+ AV + G F +L KP D L A+ A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 LEQSAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + + +V SP M ++ A +D +VLI G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AIH S R + F A++CGAL E LL+SELFGH +GAFTGAV +++G+F+ A+GG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDE+ + +Q LLR L+ R+V P+G + ++VR++ AT++DL + +++G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 ED YYR+ V + P L ER DI +A H L + +R+FS DA + L+ SWP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVE--QALEGE---------------NTALPTFVE 393 GNVRQL N IE+ V L I+ +E Q GE E Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 394 --------ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 A Q E ++L + L+ GN+T AA AG R+ F L+ +H + A Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKKHGVRA 474 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 163/456 (35%), Positives = 250/456 (54%), Gaps = 26/456 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +LLV+D L ++L L GY+V+ + + E L L +++ V++DL++ GM + Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 + P +PV+++TA G+I DAV A + G F F+ KP+D L ++ A+E+ Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRLM 123 Query: 128 TDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 D I+ P M + + +A SD +VL+ G+SGTGKE+FA+AI Sbjct: 124 RDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAI 183 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R+++PF+A+NC A+PE L+E+ELFGH +GAFTGA + + G F+ A GT+FLDEI Sbjct: 184 HQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEI 243 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P LQ KLLRVL+E V LGS + ++VR+++AT+R+L +A+ G FR DLYYRL Sbjct: 244 GELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRL 303 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 V ++IP L ER ED+ L+A H L + K + + DA+ L WPGNVR+L Sbjct: 304 AVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQ 363 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---------------ARNQFELNY 402 N IE+ L + ++ A + + + A + E A E Sbjct: 364 NTIERAAILHDTE-VTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAK 422 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + L+ K N + AA G + + + LD Sbjct: 423 IEATLRECKWNKSAAAERLGISYKTLLTKIHGYGLD 458 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 166/436 (38%), Positives = 247/436 (56%), Gaps = 1/436 (0%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A++L++DDD + +LL L Y V + GA +NR + ++V+ D ++ + Sbjct: 1 MRANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDAT 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L I+K P VI+LT H + AV A ++G F F KP D ++L I ALE Sbjct: 61 GLDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEI 120 Query: 124 SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 + + + + +M ++ R VA SDVS+LI G+SGTGKE+ A IH++S R Sbjct: 121 RSL-REAVSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIHSSSHR 179 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 S P I INC ALP +L+ESELFG +GAFTGA S+REGLF+ AEGGTL LDE+ +MP Sbjct: 180 ASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELSEMPID 239 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 Q KLLRVLQE++VRP+G + RII+AT+R +A+ G+ REDL+YR++ VS+ Sbjct: 240 TQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRISAVSVH 299 Query: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 +P L ER EDI LA L++ + + + F+ +A +RL + WPGNVRQL N +++ Sbjct: 300 LPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQNEVQRA 359 Query: 364 VALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGR 423 V L ++ + + T E N + ++L+ T GN A+ G Sbjct: 360 VLLCEGKLVDAPDLSITAPANESTGDTSYTLLEGVERNTIVQMLKETGGNKLETAKRLGI 419 Query: 424 NRTEFYKLLSRHELDA 439 R Y + + ++ Sbjct: 420 GRQTLYNKIKAYGIET 435 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 160/454 (35%), Positives = 256/454 (56%), Gaps = 16/454 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +P +++ +DD + +L+ L +V+ ES E L + +V +V++DLRM Sbjct: 1 MNAQPV-VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DGM++ ++ P VI++T H ++ AV + + G F ++ KP + L ++ A Sbjct: 60 RIDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L + + I+ RS M + A D SVLI G+SGTGK Sbjct: 120 LSHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH SPR F+AINC A+PEQ++ESELFG+ +GAFTGA + GLF+ A GG Sbjct: 180 ELVARQIHLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDE+ + LQ KLLRVLQ+ LG +NVR+++AT+RD+P +A+ FR Sbjct: 240 TIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDLYYRL V+ + IPAL +R +D+PLLAN+ + + A+R V ST + LM WP Sbjct: 300 EDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQAL-EGENTALPTF----VEARNQFELNYLRK 405 GNVR+L NVI++ + L VI + ++ + G ++ + + E+ ++RK Sbjct: 360 GNVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRK 419 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 L+ T G+ A + G +++ ++ + R+ ++ Sbjct: 420 TLRETNGDRALCAEILGIDKSTLWRKIKRYSIEE 453 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 170/446 (38%), Positives = 263/446 (58%), Gaps = 19/446 (4%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LL++D+ L L+ + LTSE TA +G EGL++L+ ++ D++I+D+RM M G + Sbjct: 2 SILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGNE 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + K+ P MPVII+TAHG+IPDAVAA ++G + +LTKP + + L +I A+E S Sbjct: 62 VMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISRM 121 Query: 127 ATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + +V +S +++L A VA +D VL+ G+SGTGKE+ A+ + Sbjct: 122 RRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQV 181 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H+ S R KPFI +NC A+PE L ESELFGH +G+FT A + +G AEGGTLFLDEI Sbjct: 182 HSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDEI 241 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G++P +QVKLLR LQE +++P+GS + ++VR+++AT+R L + +GEFR+DL+YRL Sbjct: 242 GELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYRL 301 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV +++P L++R EDI L + R FS AM++L+ SW GN+R+L Sbjct: 302 NVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNIRELE 356 Query: 358 NVIEQCVALTSSPVISDALVEQALEGE-----NTALPTFVEARNQFELNYLRKLLQITKG 412 N I + L I++ + + +P + E N + K L G Sbjct: 357 NTIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALHKFDG 416 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELD 438 N + AA+ R L ++E++ Sbjct: 417 NKSRAAKYLCIPRHVLLYRLEKYEIN 442 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 180/450 (40%), Positives = 255/450 (56%), Gaps = 15/450 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K A +LLV+DD LL L EGY +V E G L+ L R+ DLV+SDLR+ Sbjct: 1 MS-KTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDD 119 ++G++LF Q P ++LTA G++ +AVAA ++GV FLTKP+ D L + Sbjct: 60 GLNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRR 119 Query: 120 AL-----EQSAPATDER-----WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 L E+S ER + ++ M ++ VA + +VLI+G+SGTG Sbjct: 120 TLAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTG 179 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+ IH ASPR PF+A+NC A+PE LLESELFGH +GAFTGA R+G F+ A G Sbjct: 180 KELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASG 239 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEIG++P LQ K LRVLQER +G NR++ +VRII+AT+RDL + + F Sbjct: 240 GTLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRF 299 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 REDLYYRL+V + +PAL +R + +P+L +LLR+AA + V+ A+ + W Sbjct: 300 REDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEG--ENTALPTFVEARNQFELNYLRKLL 407 PGN+R+L NVIE+ V L ++ + + + +P + E N + L Sbjct: 360 PGNIRELQNVIERAVILCKGQ-VTLLDLPGGVRQVTASGVIPKSNGSLRDRERNDILDAL 418 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N AA G ++ L + L Sbjct: 419 ATCGNNRRLAAEKLGISKRTLQYRLKEYGL 448 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 158/452 (34%), Positives = 234/452 (51%), Gaps = 18/452 (3%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+V+D + L LT + +G + + LN DL++ DLR+ +M GM + Sbjct: 13 LLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDV 72 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ-SAP 126 ++K P +PV+ +TAHGSI AV A + G FL KP + D L +++AL + S Sbjct: 73 LYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKL 132 Query: 127 ATD-----ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNAS 181 + + + + S M + A S S+ I G+SGTGKE+ A+AIH S Sbjct: 133 KNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHATS 192 Query: 182 PRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP 241 R KPFIAINC A+P+ L+ESELFGH +GAFTGA ++R+G + A+GGTLFLDE+ +M Sbjct: 193 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMD 252 Query: 242 APLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVS 301 LQ KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ Sbjct: 253 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVIP 312 Query: 302 LKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 L +P L ER +DI +A LL ++ S + R + WPGNVRQL NV+ Sbjct: 313 LHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVLR 372 Query: 362 QCVALTSSPVISDALVEQALEGENTALPTFVEAR-NQF-----------ELNYLRKLLQI 409 V L + I +++ L ++F E + + ++ Sbjct: 373 NVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFPLWLTEKRAIEQAIKA 432 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 GN+ AA + + Y+ L L Sbjct: 433 CDGNIPKAAGYLDVSPSTIYRKLQSWNLKETQ 464 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 161/468 (34%), Positives = 259/468 (55%), Gaps = 37/468 (7%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ + L + GY V+ A++G+ GLR+ E DLV+ D+R+ +M G++ Sbjct: 5 KILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDMGGLE 64 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + ++++ VI++TA + D A + G + F+ KP+D D L A+ +ALE + Sbjct: 65 ILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALETTRL 124 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIFAQ 175 T+ IV S M L+ +A S+ + +L+ G+SGTGK++ A+ Sbjct: 125 RTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAK 184 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R KPF+AINC A+PE L+E+ELFGH +GAFT A + ++GLF+AA+GGTLFLD Sbjct: 185 AIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLD 244 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ LQ KLLRVL+++ +R +G RD+ ++VR+I+A++RDL K + G FR+DLYY Sbjct: 245 EIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYY 304 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL ++S+ +P L +R EDI L + + + K +R + + + LM WPGNVR+ Sbjct: 305 RLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPGNVRE 364 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENT--------------------------ALP 389 L N IE+ + L + + + A+ + +P Sbjct: 365 LKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIP 424 Query: 390 TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + + E ++ ++ GN THAAR+ +R L + L Sbjct: 425 EGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKKFGL 472 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 171/445 (38%), Positives = 250/445 (56%), Gaps = 12/445 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A++L+V+DD G +LL L +G+ V A G EGLR + +E+ DLV+SDL+M Sbjct: 1 MSANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV-DKDALYQAIDDALE 122 G++LF E ++ I +TA G + +AVAA ++G F FLTKP+ D +L ++ ALE Sbjct: 61 GLELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALE 120 Query: 123 ----------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + ++ M + + VA S +VLI+G+SGTGKE+ Sbjct: 121 SVERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH S R FI +NC A+PE LLESELFGH +GAFTGA+ R G F+ AEGGT+ Sbjct: 181 VARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTI 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG+MPA LQ KLLRVLQER +G + I NVR+I+AT+RDL + +A FR+D Sbjct: 241 FLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDD 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 L+YRLNV + +P L R + + LA + + A + ++ + +A++ + WPGN Sbjct: 301 LFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKG 412 +R+L NVIE+ V L ++ + + G+ T V E N + + L+ +G Sbjct: 361 IRELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVGILKDIERNCILEALKNNRG 419 Query: 413 NVTHAARMAGRNRTEFYKLLSRHEL 437 N AA G ++ L L Sbjct: 420 NRRMAAETLGISKRTLQYRLKELGL 444 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 164/452 (36%), Positives = 263/452 (58%), Gaps = 22/452 (4%) Query: 10 LVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFA 69 +VDD+ + +LL + L+ G A + +E + + DL + DLR+ + G+ + Sbjct: 5 VVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDILK 64 Query: 70 EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA-----LEQS 124 +I++ P V+I+TA S AV A + G + +++KP + + L I + LE+ Sbjct: 65 QIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLERR 124 Query: 125 APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 +E E + +S + + + + +A D++VLI G+SGTGKE+ A+ IH S R Sbjct: 125 ICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSRK 184 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 +KPF+AINC +LP +LLESELFG+ +GAFTGAVS+++GL + A GGTLFLDEIG+MP PL Sbjct: 185 NKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMPL 244 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLR L+E+ +RPLGS ++I ++VRIISAT+R+L + + +G FREDLYYRL + +K+ Sbjct: 245 QAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIKM 304 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P+L ER EDIPLL +L++ ++ ++ S D MK L++ + GN+R+L N++E+ V Sbjct: 305 PSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKAV 364 Query: 365 ALTSSPVI----------------SDALVEQALEGENTALPTFVEARNQFELNYLRKLLQ 408 L+ + + E ++ E ++ E + K L+ Sbjct: 365 ILSDGEELNFIPAFPEKFNSLYIDNPED-EFTVKSFPEEGVDLKEVLSRIEKALIFKALE 423 Query: 409 ITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +G + AA + EF LS++ D+ Sbjct: 424 KAEGKKSKAADILRLTFREFRYRLSKYREDSE 455 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 153/459 (33%), Positives = 253/459 (55%), Gaps = 27/459 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 ++++DD+ + L L GY TA EGL+ + K V D+R+ + + Sbjct: 1 MRKKIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGN 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+QL I+++ + V+++TA+G I AV A + G F ++ KP + D + + ++ Sbjct: 61 GLQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDK 120 Query: 124 SAPATDERWRE--------AIVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKEIFA 174 E I+ M + + +++++ DV+VLI G++GTGKE+ A Sbjct: 121 LKLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 AIH+ SPR + INCGA+P QL+ESELFG+ + AFTGA + ++GL + A+GGT+FL Sbjct: 181 SAIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG++ +Q KLLR L+ERK + +G DI++N+R+I+AT++DL +A+ + EFREDLY Sbjct: 241 DEIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNVV + +P L +R EDI LLA H L Q ++ + F+ +A ++L+ W GN+R Sbjct: 301 YRLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALP------------------TFVEARN 396 +L NV+E+ + L I + + G + Sbjct: 361 ELKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQPMIKIGEDIPKDFSLENYLQ 420 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + E +Y++ L++ KGN + AA + G +R + ++ Sbjct: 421 EIEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEKY 459 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 605 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 189/472 (40%), Positives = 286/472 (60%), Gaps = 31/472 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRL--TSEGYSVVTAESGAEGLRVLNREKVDLVISDLR 58 MS + L+++DD+ +L+ L L E V T S GL + R+ VD+++ D+R Sbjct: 1 MSKQ--RLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIR 58 Query: 59 MDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAID 118 M EMDGM++ ++++ P + V+++TA+GSI AV A ++G + F+TKP + L + ++ Sbjct: 59 MPEMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLN 118 Query: 119 DALEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 168 ALE+S + V +SP M RL + + +A +D +VLI G+SGT Sbjct: 119 KALERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGT 178 Query: 169 GKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 GKE+ A+A+H SPR+S+ + +NC A+PE LLESELFGH +GAFTGA N G+F A+ Sbjct: 179 GKELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEAD 238 Query: 229 GGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGE 288 TL LDEIGD+P +Q KLLRVLQER+VRPLGS++ ++VRI+S T++DL + Sbjct: 239 KSTLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRS 298 Query: 289 FREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 FREDLYYRLNVV+L+ P+L+E TEDIPLLA+H LR ++ FS A++ +M S Sbjct: 299 FREDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKS 358 Query: 349 WPGNVRQLVNVIEQCVALTSSPVISDALV-------------EQALEGENTALPTFVEAR 395 WPGNVR+L N + + + I A + Q + A+ + +A+ Sbjct: 359 WPGNVRELQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAK 418 Query: 396 NQ----FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 + F Y+ +LL T+GNVT A+ +AG +RT K++ R+E+ + D++ Sbjct: 419 EELLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRRYEIRSEDYR 470 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 175/449 (38%), Positives = 255/449 (56%), Gaps = 19/449 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD + ++L LT +GY V A GA+ + L D V+ DLRM Sbjct: 1 MS-SRARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQ 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG + +K+ P +PV+++TA G + AV A ++G F + TKP D + +++ A Sbjct: 60 DVDGFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LEQ T+ R + +V S M L VA S VL+ G+SG+GK Sbjct: 120 LEQRRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H R + PF+A+NC ALP LLESELFGH +GAFTGA + R GLF A+GG Sbjct: 180 ELVARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIGDM LQ +LLRVL++ +VR +G++ ++VR+++ATH+DL + G FR Sbjct: 240 TLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF-VRAFSTDAMKRLMTASW 349 D++YRLNVV+L++P L ER EDIP L H L+QA R+ V+ FS + + L W Sbjct: 300 ADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPW 359 Query: 350 PGNVRQLVNVIEQCVALTSSPVISD----ALVEQALEGENTALPTFVEA---RNQFELNY 402 GNVR+L N++++ V L S+ V+ + EN L Q E Y Sbjct: 360 AGNVRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQLETEY 419 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKL 431 + + GN T AA + G + + ++ Sbjct: 420 IAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 167/449 (37%), Positives = 250/449 (55%), Gaps = 23/449 (5%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 LL+VDDD + + RL+ G+ + A + L + R D+ + D++M M G+ L Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 A + P VI+LT GSI AV A + G F +LTKP L I+ A ++ Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 128 TDERWREAI----------VTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 + + + I + +S M L + S+ ++LI G+SGTGKE+ A+A+ Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H AS R +P + INC ALPE LLESELFGH +GAFTGAV+ + GLF+ A+G TLF+DEI Sbjct: 189 HAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLFIDEI 248 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 G+MP LQ KLLRVL++ +R +GS ++ +NVRI++AT+R + + G FREDLYYR+ Sbjct: 249 GEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDLYYRI 308 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+SL++P L RT DIPLL H L + A+ L +WPGNVRQL+ Sbjct: 309 NVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPGNVRQLI 360 Query: 358 NVIEQCVALTSSPVISDALVEQAL-----EGENTALPTFVEARNQFELNYLRKLLQITKG 412 N IE+ + I + + + E ++ + + + ++L+ KG Sbjct: 361 NAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEVLKREKG 420 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDAND 441 N + AARM G +R + Y+LL + ++ + Sbjct: 421 NKSRAARMLGIDRRKLYRLLEKFTIETGE 449 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 178/467 (38%), Positives = 272/467 (58%), Gaps = 26/467 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 H+ +L+VDDD +L +L L + V T SG L L+R + D++ +DLRM Sbjct: 10 HEKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPG 69 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DGM L ++++ P + VI++T +G+I AV + ++G + F+ KP D++ + +++ L Sbjct: 70 LDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCL 129 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E+ + R+ + + S M + + R VA ++V+VLI G+SGTGKE Sbjct: 130 ERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKE 189 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + +A+H S R +KP + +NC ALP ++LESELFG+ +GAFTGA ++ G F A+G T Sbjct: 190 LAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGST 249 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDEIGDMP LQ KLLRVLQE++V PLG + ++VR++++T++DL +A+G FRE Sbjct: 250 LLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRE 309 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL YRLNVV++ IP+LAER EDIPLLA H L++ A + F+ + L+ W G Sbjct: 310 DLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKG 369 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV------EQALEGENTALPTF---------VEARN 396 N+R+L N +++ V LTS P I+ A + + +PT E Sbjct: 370 NIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAKREVLT 429 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 F YL + + GNVT AA+ +G R F +LL +L A F+ Sbjct: 430 SFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLRVFDLKAESFR 476 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 176/453 (38%), Positives = 262/453 (57%), Gaps = 19/453 (4%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + P +L+VD+D L + + L GY A SG EG+R + ++ ++VI+DL M++ Sbjct: 12 AAPPIRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMND 71 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 +DGM++ A ++ P VI++T H ++P AV A QQG F+FL KP+ L + A Sbjct: 72 VDGMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAA 131 Query: 122 EQSAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + + E I+ S M +++++ + +A +D SVLI G+SGTGKE Sbjct: 132 DAVRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKE 191 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + AQAIH SPR SK +A+NC A+ E L+ESELFGH +GA+T A+++R G F+ A GGT Sbjct: 192 LVAQAIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGT 251 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+GDMP Q+KLLRVL+E ++ +G N+ I +NVR++SAT+R L A+ G FR Sbjct: 252 LFLDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRA 311 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VV++++PAL +R EDI LA+H RQ RH + S +RL + WPG Sbjct: 312 DLYYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPG 371 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQAL---------EGENTALPTFVEARNQFELNY 402 NVRQL N IE V L + ++ + L + + + E Sbjct: 372 NVRQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWA 431 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 + + L++T GN AAR+ G Y+ L ++ Sbjct: 432 IEETLKLTSGNREEAARILGIGARTLYRKLDKY 464 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 184/473 (38%), Positives = 254/473 (53%), Gaps = 31/473 (6%) Query: 1 MSHKPA--HLLLVDDDPGLLKLLGLRLT-SEGYSVVTAESGAEGLRVLNREKVDLVISDL 57 M +L+V+D L L S V TAE GA GL +L + LVI+DL Sbjct: 1 MPAPAPVQRVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDL 60 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 RM + GM+L IQ + + VI+ T +G+I DAV A + GV+ FLTKP D L + Sbjct: 61 RMPRVGGMKLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIV 120 Query: 118 DDALEQSAPATDERWREAIVTR----------SPLMLRLLEQARLVAQSDVSVLINGQSG 167 AL A + + SP M+ L E VA + +VLI G++G Sbjct: 121 QRALRDRALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETG 180 Query: 168 TGKEIFAQAIHNASPR-NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQA 226 TGKE A+AIH AS + F+A+NCGAL E LLESELFGH +G++TGA R G F+ Sbjct: 181 TGKEQIARAIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFEL 240 Query: 227 AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMAR 286 A GTLFLDEIGD+P +QVKLLRVLQER+ +G I+I+VR+++ATH+D+ K + Sbjct: 241 AHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKD 300 Query: 287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT 346 G+FREDLYYRLNVV + IP L ERTEDIP+L +H ++ R S +A+ L Sbjct: 301 GKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-VRVGQKPPTISPEALDLLTK 359 Query: 347 ASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPT---------------- 390 WPGNVRQL N IE+ VI + + + Sbjct: 360 CPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQ 419 Query: 391 FVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 E FE Y+R+ L+ ++G+V A++ G +R ++++++D FK Sbjct: 420 LSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQYKIDKEQFK 472 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 156/455 (34%), Positives = 251/455 (55%), Gaps = 18/455 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDDD L +L + L G+ +TAE+ + L + VDLV+ D+R+ + +G Sbjct: 1 MATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 + L +++ +PVI++TA+ AV A + G ++ KP D L ++ +L+ S Sbjct: 61 VDLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTS 120 Query: 125 APATDERWRE--------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + RW + I+ SP M + VA + +++L+ G+SGTGKE+ A+A Sbjct: 121 RLQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARA 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH SPR P + INCG LPE L+ESELFG+ RGAFTGA ++GL + A+ GT FLDE Sbjct: 181 IHAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 + ++ QVKLLR +Q++ PLG +I +VRII+AT+R + + +A+G FR+DLYYR Sbjct: 241 VAELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+ + + +P L +R D+ LLA H L +A K + S +A ++L +PGNVR+L Sbjct: 301 LSGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVREL 360 Query: 357 VNVIEQCVALTSSPVISDALV----------EQALEGENTALPTFVEARNQFELNYLRKL 406 N+IE+ VAL I+ + + + + + E L+ Sbjct: 361 ENIIERAVALEQGNTITPSSLIIYEQDAAADPSGVNRVLGGELSLEDHLQSEEHKILKAA 420 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + T G+ + AA++ G N +F ++ ++ D Sbjct: 421 MDATGGHKSQAAQLVGLNFRQFRYRWDKYASESQD 455 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 160/440 (36%), Positives = 252/440 (57%), Gaps = 6/440 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +L++DD L++L L S G+ V+ +E +R+L + + LVI+D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 ++DG + +++ G+ V+ +T +I A+ A + G +L KP + L+ AID A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 LEQSAPATDE------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 L + R + I+ S M+++ E A S +VLI G+SGTGKE+ A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AIH S R PF+ +NCG +PE LLESELFG+ +GAFTGA +R G FQ A+ GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEI + P+Q+KLLRVLQE ++ LGS++ +N+RI++AT+R L + + +G FREDL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+++ P L +R +DI LL NH ++ +ER+ S + L WPGNVR Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNV 414 +L NVI + +++ SS + + + + + E ++R++L GN Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSAVGEGSLNRTLAEVEAEHVRRVLDSVGGNK 420 Query: 415 THAARMAGRNRTEFYKLLSR 434 T AAR+ G +R L + Sbjct: 421 TLAARILGVDRKTLRAKLRK 440 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 602 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 163/458 (35%), Positives = 252/458 (55%), Gaps = 22/458 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + LG L EGY V+ AE+GA+ L ++ E DLV+ D+ M MDG+Q Sbjct: 5 ILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGIQT 64 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 +I+ + P + V++++ HG+I AV AT+ G F F+ KP D + I +AL Sbjct: 65 LEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKELR 124 Query: 128 TDERWRE-------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + +V S + L Q + +A + VLI+G+ G GKE+ A+AIH+ Sbjct: 125 KENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARAIHHY 184 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R KPF+A+NC A+PE LL ELFGH RGA+TGA S + G A+GGT+FLDE+ ++ Sbjct: 185 STRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLDEVHEL 244 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 Q +LLR+L + G +R + I+VR+++AT R L +A+ G FREDLY L VV Sbjct: 245 SLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQFLQVV 304 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 ++ L ER+EDIPLL H +R R + F A+ L + WPGN+R+L N++ Sbjct: 305 PFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRELKNIV 364 Query: 361 EQCVALTSSPVISDALVEQALEGEN---------------TALPTFVEARNQFELNYLRK 405 E+ + + + PVI+ + + G N A+ + AR +FE +++ + Sbjct: 365 ERILIMAAGPVITADDLPALMPGGNCKASSRLQEAAEQGEAAVGSLRSARERFERDFILQ 424 Query: 406 LLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 L + N+ AA + RT + L ++ L D + Sbjct: 425 TLLRSAWNLDKAAALLEMERTVLQRKLLQYGLTPEDER 462 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 602 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 258/472 (54%), Gaps = 32/472 (6%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K LLL++DD G L L +EGY+V G GL D+VISDL++ Sbjct: 1 MSVKR-TLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG++L + + +P +P+I++TAHG+ A+ AT+ G + +L KP + + L ++ A Sbjct: 60 GLDGLELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKA 119 Query: 121 LEQSAPATD-------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 +E S ++ R AI+ S LM + ++ VA ++VLI G++GTGKE+ Sbjct: 120 VESSRLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELI 179 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AI+ S R++ PF+A+NC A+PE LLESELFGH RGAFTGA R G F+ A GGTLF Sbjct: 180 ARAIYQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLF 239 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM Q KLLRVLQE+ + LG I I+ R+I+ATHRDL KA+ +FREDL Sbjct: 240 LDEIGDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDL 299 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV +K PAL R+EDIP L +L++ + +A++ L WPGNV Sbjct: 300 YYRLNVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNV 359 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEA------------------- 394 R+L NV+ Q + L IS V + + A+ ++ Sbjct: 360 RELENVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEG 419 Query: 395 -----RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + E + +++ +GN AAR G +R + L+ L Sbjct: 420 VHATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLNHFGLHPGQ 471 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 602 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 160/444 (36%), Positives = 250/444 (56%), Gaps = 17/444 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +LLVDD+ ++LL RLT +GYSV + + L ++ + D+ + D+ M+ MD Sbjct: 2 RRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGMD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L + +K+QP + +I+LT + ++ A+ A ++G + +LTKP+ L + AL++ Sbjct: 62 GLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALDR 121 Query: 124 SAPA----------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ S ++ L V+ S + VLI G+SGTGKE+ Sbjct: 122 KKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A A+H S R PF+ IN A+P QLLESELFGH +GAFTGA N++GL + A+ GTLF Sbjct: 182 ANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDM A LQVKLLR L + RP+G NVR+++AT+ +L +A+ G FREDL Sbjct: 242 LDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFREDL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL+VV+L +P L ER D +LA + LRQ+ + + S +A L+ ++PGNV Sbjct: 302 YYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGNV 356 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 R+L N+IE+ + L+ + + + A E ++ ++L+ T N Sbjct: 357 RELANLIERGILLSKDNDLYPNDFFARETYSKNNMKSL--ALQDIEKEHICQVLEKTGWN 414 Query: 414 VTHAARMAGRNRTEFYKLLSRHEL 437 T AA++ Y+ + ++L Sbjct: 415 KTEAAKILKIGLRTLYRKIEEYKL 438 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 166/456 (36%), Positives = 252/456 (55%), Gaps = 20/456 (4%) Query: 1 MSHK-PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ L+VDD + KL + G+ AES L L + D++++DLRM Sbjct: 1 MTDDYRIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRM 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 E+ G+ A ++K+ P V I+T +GSI AV + + G + ++TKP + L + Sbjct: 61 GELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQR 120 Query: 120 ALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 E+ + + IV S + +L + + VLI G+SGTG Sbjct: 121 MAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTG 180 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+A+H +PF+A++CG+L L+ESELFGH +GAFTGA+ +EGLFQAA G Sbjct: 181 KELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANG 240 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GT+FLDEIG++P LQ KLLRVLQ+++VRP+GSN+ + ++VR+I+AT+RDL G F Sbjct: 241 GTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTF 300 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R+DLY+RLNVV++ +P+L ER DIP L H + + + ++ AMK LM W Sbjct: 301 RKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDW 358 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENT--ALPTFVE-----ARNQFELNY 402 PGNVR+L N IE+ VAL + VI + +L+ P E E Sbjct: 359 PGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTT 418 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 ++++ G+ A +M G +R Y+ + R+ +D Sbjct: 419 IQRVFDQVGGDKGLALKMLGISRATLYRKIKRYNID 454 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 162/454 (35%), Positives = 255/454 (56%), Gaps = 18/454 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNR-----EKVDLVISDLRM 59 +L+ DDD + + L L LT GY VVTA +G++ + + +DL++ DLR+ Sbjct: 1 MKTILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRL 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 MDG ++ +++ +P +P+I++TA+ + A+ A + G L KPVD D L + ID Sbjct: 61 TGMDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDK 120 Query: 120 ALEQSAPAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 E SA + + +V R+ M + + VA S +VLI G+SGTG Sbjct: 121 IFEMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTG 180 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A+AIH S ++PFIA+ C AL +LESELFGH +GAFTGA+ + G F+ A+G Sbjct: 181 KEMVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQG 240 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEI ++ +QVKLLR +QER+ +G I +VRI++AT+++L +A G F Sbjct: 241 GTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMF 300 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R DLYYRL VVS+ +P L ER EDIP+L LL + V + M +++ SW Sbjct: 301 RNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSW 360 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDA--LVEQALEGENTALPTFVEARNQFELNYLRKLL 407 PGNVR+L N + + V L+ ++ +E+ +G+ P ++ ++ E +++ +L Sbjct: 361 PGNVRELENTLRRAVILSHGNMLLPESLHLEEGCDGQER-FPLLLKPLHEVEREHIQNVL 419 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + AA + G +R + + + L+ D Sbjct: 420 CYVRNEKKRAAEILGISRPTLDRRIKEYGLEEED 453 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 172/452 (38%), Positives = 261/452 (57%), Gaps = 17/452 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS A +L+VDD+ + L LT G+ A G E L L E DLV++DLRM Sbjct: 1 MS--RARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMP 58 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG++L A +++ P + VI++T H ++ AVAA G F+++ KPV + + A Sbjct: 59 GMDGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKA 118 Query: 121 LEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE++A + ++ +S M L E VA+ + +VL+ G++GTGK Sbjct: 119 LEKNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGK 178 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+ IH+ S R F+A+NCGA E+L+ +ELFGH R AFTGA + R+GL +AA GG Sbjct: 179 ELVARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGG 238 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P +QVKLLRVLQER +G + ++ R++SAT++DL K G FR Sbjct: 239 TLFLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFR 298 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 +DL+YRL+V++L +P L+ER EDIPLLA H L + A V S + + L+ +P Sbjct: 299 QDLFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNV-RLSPEVLDSLLLYEYP 357 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE----ARNQFELNYLRKL 406 GNVR+L N++++ +A+ VI + L + + E Y+R + Sbjct: 358 GNVRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEKAYIRDV 417 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L+ +GN + AAR+ G +R ++ L R+ L+ Sbjct: 418 LEEVEGNKSKAARVLGIDRVSLWRKLKRYSLE 449 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 166/451 (36%), Positives = 248/451 (54%), Gaps = 15/451 (3%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD-E 61 HLL+VDD+P + L L + TA S E L + LVI+D++M + Sbjct: 35 DSELHLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGD 94 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 DG++L + I++ PG I++TA+G++ AV A ++G F F+ KPVD + + Q + A Sbjct: 95 RDGLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAA 154 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E + + L+++ R VA +D +VL+ G+SGTGKE Sbjct: 155 EHHQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKE 214 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A+H+ S RN+ PF+A+N GALPE LLESELFGH +G+FTGA + G F+ A GGT Sbjct: 215 LIARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGT 274 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEI ++PA QV LLRVL+ + +G + N RI+SAT++ K + G FRE Sbjct: 275 LFLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFRE 334 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLN++ +++P L R EDIPLL H L++ RH+ ++ +AM+ L + WPG Sbjct: 335 DLYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPG 394 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEAR----NQFELNYLRKLL 407 NVRQL N IE+ V + I A + L +N A T ++ E + L Sbjct: 395 NVRQLRNHIERLVVTVPAETILAADLPCELHQQNAAQSTALKTLVEITESAEKTGIELAL 454 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 K + A+ G + + ++R+ L Sbjct: 455 SAKKSHREQTAKALGISVRTLHYKMNRYNLH 485 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 159/445 (35%), Positives = 240/445 (53%), Gaps = 15/445 (3%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S +L+VDD+ G+ L L G+ V TAES EG L + DLVI D+ + Sbjct: 9 SAPQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPG 68 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 G++ ++ VI++TA + A+ A + G F+ KP D + +I + Sbjct: 69 KAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRST 128 Query: 122 EQSAPATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E++ A + ++ SP + +L + +A + +VLI G+SG GK Sbjct: 129 ERARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGK 188 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H SPR +PF+A+NC A+ +L+ESELFGH +GAFTGA R GLF A GG Sbjct: 189 EVVARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGG 248 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ +LLRVL+ERKVRP+G+ +++ ++VR+++AT+RDL +A FR Sbjct: 249 TLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFR 308 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRL V++L +P L ER ED+P LA ++Q A + S + RLM WP Sbjct: 309 EDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWP 368 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQIT 410 GNVR+L N +E+ + P+ S + E ++ +L Sbjct: 369 GNVRELRNFVERSLLFGDFPLASL----AGAVAPPPPASAAPLLLEEVEKRHILAVLDQC 424 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRH 435 GN T AA + G +R + + Sbjct: 425 GGNKTRAAELLGVSRKTLERKCAEW 449 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 602 bits (1553), Expect = e-171, Method: Composition-based stats. Identities = 169/449 (37%), Positives = 262/449 (58%), Gaps = 14/449 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 +H+++VDD+P LK L L EG+ V + L + D++ISD+RM MD Sbjct: 1 MISHIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM+L ++ P + VI++T + S+ AV A ++G F +L KP D + + + AL Sbjct: 61 GMELMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHL 120 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + R I+ + + ++ + ++ +VLI G SG+GKE+ Sbjct: 121 LSARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH AS R++ PF+A NCGAL E L+++ELFGH +GAFTGA S GL +AA GGTLF Sbjct: 181 ARAIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+MP +QVKLLRVLQE ++ +G +R + ++VRI+SAT D+ A+ G FR+DL Sbjct: 241 LDEIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 Y+R+NVV++K+P LAER EDIPLLA H+L + + ++A S AM L ++PGNV Sbjct: 301 YFRINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGEN----TALPTFVEARNQFELNYLRKLLQI 409 R+L N++E+ VA+ +I + + L + E +Y+ LL+I Sbjct: 361 RELENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTLAELERDYMAHLLKI 420 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELD 438 T G + A + G +R ++ + +++L+ Sbjct: 421 TGGARSRTAEILGIDRASLWRKMKKYDLE 449 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 159/440 (36%), Positives = 250/440 (56%), Gaps = 7/440 (1%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS K +L VDD L++L L S+GY V+T E L +L ++D+VI+D RM Sbjct: 1 MSEK-IRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L +++ + ++++T + SI AV A + G +L KP + L A+D Sbjct: 60 QATGLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRI 119 Query: 121 LEQSAPATDERWRE------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 +E+ + E IV SP M + + A ++ +VLI+G SGTGKE+ A Sbjct: 120 VERVHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +A+H S R + PF+ +NC A+P+ L+ESELFGH +GAFTGA R G F+ A GGT+FL Sbjct: 180 RAVHYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD +Q KLLR+LQ ++ +GS+ ++ RI++ATH+DL + + G FREDLY Sbjct: 240 DEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLY 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL+VV + +P+LAER +DI +L ++ L + ++ + + + +A+ L SWPGNVR Sbjct: 300 YRLHVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVR 359 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNV 414 +L N+I++ V + I + + + + E +++ +L +T N Sbjct: 360 ELENLIQRMVVIVDHDPIEVTDLPPNMRFSLPMEERVDRSLAEVEQEHIKNVLIMTDNNK 419 Query: 415 THAARMAGRNRTEFYKLLSR 434 T AA + G NR + L R Sbjct: 420 TRAAEILGINRKTLREKLKR 439 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 156/451 (34%), Positives = 244/451 (54%), Gaps = 13/451 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M K +L+VDD+ + +L L L Y V A +G E L L +E D+V+ D+ M Sbjct: 1 MGDKVKKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG E++ VI+++A+G++ AV ++G F +++KP D + + A Sbjct: 61 TLDGPGFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKA 120 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 E+ + +V M + + AQ + VL+ G++GTGK Sbjct: 121 EERLRLREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H R KPFIAINCG + +++SELFGH RGAFTGA +GLF AAEGG Sbjct: 181 ELVARALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P LQ +LLR LQE++VRP+G+ +VRI++AT R+L + + G FR Sbjct: 241 TLFLDEIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL++RL V+ + +P L ER DI LLA H L + A R + + +A++ L +WP Sbjct: 301 SDLFFRLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWP 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---TFVEARNQFELNYLRKLL 407 GNVR+L N +E+ I + + + +A ++ E Y+R+ L Sbjct: 361 GNVRELANFMEKTAIFCRDDKICMEHLPWEIRRHPRDRGQDMSLKKAVSRIEPEYIRRAL 420 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +T GN T AA++ + + + ++L+ Sbjct: 421 SVTGGNRTKAAQLLDISLRNLHYKIREYDLE 451 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 153/462 (33%), Positives = 253/462 (54%), Gaps = 27/462 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSE-GYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+ DD+ + ++L + VV S + LR L++E+ L+I+DL++ Sbjct: 10 MTYRVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGS 69 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 + + ++ +P+I+LTA+GS+ A+ ++GVF +L P D D L A+ AL+ Sbjct: 70 NSIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALK 129 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 S+ + + I+ SP ++ L V ++D +VL+ G+SGTGKE+ Sbjct: 130 VSSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKEL 189 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 ++AIH S R PF+A+NC A+PE LLESELFG+ +GAFTGA ++G F+ A GGT Sbjct: 190 VSRAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTF 249 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEI +M A +Q K+LR+++ +++ LG I ++VRII AT+RDL + + G+FR+D Sbjct: 250 FLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDD 309 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYR++V + +PAL ER+ DI L+ H + + + S++ K L+ W GN Sbjct: 310 LYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGN 369 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQAL----------------EGENTALPTFVEARN 396 +R+L N+IE+ V L + VI + ++ N +P + + Sbjct: 370 IRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLD 429 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 E + K L+ +K N+T AA++ G R F L ++ + Sbjct: 430 DLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQKYGIS 471 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 180/452 (39%), Positives = 257/452 (56%), Gaps = 13/452 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDDD +L+++ RL+S + V+ A SG E L +L VDLVI+D+RM M Sbjct: 2 QTKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 GM LF EIQ G+PVI LTA+G+I DAV A + G +LTKP D L + + L Sbjct: 62 GGMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEIL- 120 Query: 123 QSAPATDERWREAIV-------TRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 P +E I +S M L + +A SDV+VLI G+SG GKE A+ Sbjct: 121 -RKPVPHLPAQETISPKHEFWGGKSASMRELQDLVERIAPSDVNVLILGESGVGKERVAR 179 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 IH PR PF+ ++CG+ P LLESELFGH RGAFT A+ +++GL +AAE GTLFLD Sbjct: 180 LIHQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLD 239 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG++ +QV+LLR L++RK+R +G R+I +N R+I+AT+ DLP+ + G FREDLYY Sbjct: 240 EIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYY 299 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV+L+IP L ER EDIPLLA H L+ E + ++ L WPGNVR+ Sbjct: 300 RLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRE 359 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALP----TFVEARNQFELNYLRKLLQITK 411 L N +E L V+ + + + P + + E N + + LQ Sbjct: 360 LKNALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNAIVRALQQAG 419 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443 AA++ G +R + ++ ++++ + Sbjct: 420 WVQKDAAQLLGISRRAINYKIKKYGIESSGKR 451 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 158/446 (35%), Positives = 256/446 (57%), Gaps = 13/446 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ L LL + EG+ V+ A GL+ L++ +D+V+ D+++ + G++ Sbjct: 61 KILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVE 120 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L I++ P +I+LTA+G+IPD V A + G F ++TK D + + A E++A Sbjct: 121 LAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAAL 180 Query: 127 ATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A + E I+ +S + + +E A+ VA +D ++L+ G++GTGKE+FAQA Sbjct: 181 ARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQA 240 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH S R ++ F+AINC A LLESE+FGH GAFTGA +R+GLF+ A GT+FLDE Sbjct: 241 IHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDE 300 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G+M LQ KLLRV++ + +G + +NVRII+AT+RDL +A G FREDL+YR Sbjct: 301 LGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYR 360 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V + +PAL +RTEDI +LA H + + + + + L +W GN+R+L Sbjct: 361 ISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIREL 420 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE---ARNQFELNYLRKLLQITKGN 413 NVIE+ V L+S ++ + ++ + + E +++K+L T+GN Sbjct: 421 KNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFSLQSVEKLHIQKVLNHTQGN 480 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDA 439 AAR+ Y+ + + L Sbjct: 481 KAEAARLLEIGIATLYRKIEEYRLSE 506 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 181/474 (38%), Positives = 254/474 (53%), Gaps = 39/474 (8%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A +LLVDDD L LG L EG+ A + + + L + +LVI+DLR+ D Sbjct: 3 PAASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGED 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM L ++++K PV+++T + + AV A + G LTKPV D L AID A+ Q Sbjct: 63 GMTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMNQ 122 Query: 124 SAPATDER----------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + E I++ M+++ + VA + S+LI G++GTGK + Sbjct: 123 RKIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSMI 182 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIHN R S PFI + CGALP+ LLESELFGH GA+TGA ++R G F+ A+GGTLF Sbjct: 183 ARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTLF 242 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEI +QVKLLRVLQE + PLG ++ R+I AT+ +L +A+A G FR+DL Sbjct: 243 LDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQDL 302 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYR+NVV++ +P+L ERT DIPLL +H LR+AAE + F +AMK L + +WPGNV Sbjct: 303 YYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGNV 362 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP------------------------ 389 RQL NV+E+ V L + V++ + + G + Sbjct: 363 RQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFNPA 422 Query: 390 -----TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + EA E + L+ N A NRT YK + R LD Sbjct: 423 VLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKRLGLD 476 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 169/448 (37%), Positives = 247/448 (55%), Gaps = 15/448 (3%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDD+ L L EGY+ TA G + L L D+V++DL+M + Sbjct: 2 ASRGRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGL 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+++ + Q P +++TA G+I AV A ++G +++LTKP+D L ++ A+E Sbjct: 62 DGIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVE 121 Query: 123 QSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 ++ + ++ P M ++L VA S SVLI G++GTGKE+ Sbjct: 122 RARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKEL 181 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH ASPR P + +NC AL E LLESELFGH RGAFTGAV REG F+ A GGTL Sbjct: 182 IAEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTL 241 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDE+ ++P QVKLLR LQER +G N + ++VRI++A++RDL + +A G FRED Sbjct: 242 FLDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFRED 301 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNVV+L+IP L ER DIP LA L + A+ + + F+ +A+ L + S+PGN Sbjct: 302 LYYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGN 361 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEGENTA-----LPTFVEARNQFELNYLRKLL 407 VR+L N IE+ L I + + E E + + L Sbjct: 362 VRELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVPGSTIYDLERYAILRTL 421 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSRH 435 + KG+ + AA + G + + L + Sbjct: 422 EACKGSTSKAATILGISPRKIQYKLHEY 449 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 182/441 (41%), Positives = 264/441 (59%), Gaps = 12/441 (2%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L+VDD+P LK+L L EGYSV A AE + L++E +D VI+D++M Sbjct: 4 KAHGKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGK 63 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG+QL + + P +P+I LTA+GS+ AV A +G F + KP D L + A+E Sbjct: 64 DGIQLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVE 123 Query: 123 QSAPATDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 Q + + IV +P MLR+ E V S SVLI G++GTGKE+ Sbjct: 124 QRSLKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELI 183 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+++H S R KPF+A+NC A+P +L+ESELFG+ +GAF+GA S R G F+ A GT+F Sbjct: 184 ARSLHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIF 243 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ PLQ KLLRVLQE+++ LGSN+ I +N R+IS+T+R++P + G FREDL Sbjct: 244 LDEIGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDL 303 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV +++P L +R EDIPLLA L+R+ R V F + M+ + WPGN+ Sbjct: 304 FYRLNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNI 362 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE--ARNQFELNYLRKLLQITK 411 RQL N+IE+ V L I+ + + L+ + + + + E + L+ + Sbjct: 363 RQLGNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAAILAALEESG 422 Query: 412 GNVTHAARMAGRNRTEFYKLL 432 GN +HAA+M G +R YK L Sbjct: 423 GNKSHAAKMLGISRKALYKRL 443 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 247/465 (53%), Gaps = 31/465 (6%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 H+LL++DD ++L L S GY+V +A EG+ + + DL+++D+ + M Sbjct: 1 MSEHILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ ++++ PG +I++TA+ + A+ A + G + F +KP L + ALE+ Sbjct: 61 GVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEK 120 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ S M + VA D +VLI G+SGTGKE+ Sbjct: 121 RRLQKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 + + S R PF+ +NC A+PE L E+ELFGH +GAFTGA S + G F+ A GGTL Sbjct: 181 SDTLRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTLL 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIGDMPA +Q KLLR ++E+++ LG R + +NVRII+AT+++L + +AR FREDL Sbjct: 241 LDEIGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRL V + +P L +R EDIP LA H+LR+ V + A++ LM WPGNV Sbjct: 301 YYRLGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------------------TFVE 393 RQL N++E+ I+ + AL +N P E Sbjct: 361 RQLANLLERAAISAQG-RITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMPLRE 419 Query: 394 ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 +Q E N L + L+ +G+ +AA + G + L +H++ Sbjct: 420 TLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQKHQIR 464 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 160/467 (34%), Positives = 258/467 (55%), Gaps = 34/467 (7%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K ++ ++DD+ + + L ++V + S +E L LN DL+I+D++M M Sbjct: 2 KMNNVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGMS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++ ++ + P +P II+TAH +I +A++A + G F +LTKP D + + + A + Sbjct: 61 GLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATKS 120 Query: 124 SAPATDERWRE---AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 S P DE +E IV ++ M + + ++++D++VLI G+SGTGKE+ AQ++H Sbjct: 121 SKPQHDELTQESNSQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQSVHEN 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R+++PFIAIN A+P +LLESELFGH +G+FTGA S R G F+ A GGTLFLDEIGDM Sbjct: 181 SSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDEIGDM 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 LQ +LLRVL + +G + I +VRII+AT++++ + G+FREDLY+RLNV Sbjct: 241 HPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHRLNVF 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +++P L +R EDIP L + L+++A+ K ++ AM+ L WPGN+RQL N Sbjct: 301 RIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQLENTC 360 Query: 361 EQCVALTSSPVISDALVEQALEGENTALPT------------FVEAR------------- 395 + S I+ + ++ + +L + E+ Sbjct: 361 RYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMND 420 Query: 396 -----NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E L++ L+ +KG AA++ G R + + L Sbjct: 421 LTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIKDLGL 467 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 167/443 (37%), Positives = 244/443 (55%), Gaps = 16/443 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LLL +DD + + L GY V GA+ L + RE DLV++D+R+ +DG+ Sbjct: 2 KLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLT 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 LF ++ QP V+++TA+ DAV+ ++G ++ KP + D L + ++ A Sbjct: 62 LFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAF 121 Query: 127 ATDER-------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + ++ S M R+ ++ A SDV VL+ G++GTGK++ A+ IH Sbjct: 122 RKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R +PF+ +NC A+PE L ESELFGH +GAFTGA R G F+AA+GGTLFLDE+G+ Sbjct: 182 RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGE 241 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 + A Q KLLR L+ P+GSNR + ++VR+I+AT+RDL A+ARG FR+DLYYRLNV Sbjct: 242 LAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNV 301 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L P L ER D+P+L L + A R V + L +PGNVR+L + Sbjct: 302 IDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHA 361 Query: 360 IEQCVALTSSPVISDALVEQALEGE---------NTALPTFVEARNQFELNYLRKLLQIT 410 +E+ VAL I + L G L EA QFE Y+R+ L+ T Sbjct: 362 LERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEKT 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLS 433 G+ AA + G +R ++ L Sbjct: 422 GGHRARAAALLGISRKSLWERLR 444 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 246/482 (51%), Gaps = 44/482 (9%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A LL++DDD +L +L E Y ++ L+ + ++ ++ I D+ + + Sbjct: 1 MTAKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G+++ E +K+ PG+ VI+ T + + +A+ A + G F ++TKP D L A+ ALE Sbjct: 61 GIEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALEC 120 Query: 123 -----------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + ++ + ++ SP M+ + + VA SD +VLI G+SGTGKE Sbjct: 121 NLLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKE 180 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A++N S R ++PF+A+NC ALPE LLESELFGH +GAFT A S R G F+ GGT Sbjct: 181 LLARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGT 240 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 +FLDEIG+M Q K LRVL+ ++ +G N I ++VR+I+AT++ L + FR Sbjct: 241 IFLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRM 300 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL VV+ +P L +R EDIPLL +++ ++++ ++A + + + L + W G Sbjct: 301 DLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEG 360 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ-------------- 397 N+R+L NVI ++ E L + +EA Sbjct: 361 NIRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVF 420 Query: 398 ------------------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 E + ++ + N AA++ G +R L R+ + A Sbjct: 421 DGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERYRIGA 480 Query: 440 ND 441 D Sbjct: 481 AD 482 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 157/465 (33%), Positives = 258/465 (55%), Gaps = 30/465 (6%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A LL++DD+ + L L E Y V ++G +GL ++ ++K DLV+ D++M++MDG Sbjct: 1 MAKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 M++ + P +P I+++ HG++ A+ A+++G F F++KP D + L + +AL++ Sbjct: 61 MEVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRG 120 Query: 125 APATDERWR-------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 T+ + I+ S + ++ E VA ++ VLI G +G+GKE+ A+ + Sbjct: 121 NLVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWL 180 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H S R P I +NC A+P +L+ESELFGH +G+FT AV R G F+ A GGTLFLDEI Sbjct: 181 HEKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEI 240 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 GDM Q K+LR LQE K+ +G +++++NVR+++AT++DL K + G FR DLY+RL Sbjct: 241 GDMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRL 300 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 NV+++ +P L ERTEDIP +A + L + + V+ S AM L W GNVR+L Sbjct: 301 NVINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELH 360 Query: 358 NVIEQCVALTSSPVISDALVEQALEGENTALP-----------------------TFVEA 394 N+IE+ + L+ + + ++ A G T + F + Sbjct: 361 NMIERLIILSDKVITENDVIAFANPGGGTNIGAVNTANGQSGLAHGPTVDYDKFNNFQDY 420 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++ E +++ L+ NV+ A R+ Y + + L Sbjct: 421 KDHAEREFIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEKFGLKR 465 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 175/459 (38%), Positives = 266/459 (57%), Gaps = 25/459 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 P +L+V+DD +L L +G+SV TA S A + L+ + DLV+SDLR+ + D Sbjct: 1 MPHSILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ L + +++ + +P+II+T + I AV A + G +++KP+ D L + I++AL+ Sbjct: 61 GIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQN 120 Query: 124 SAPATDERWREAIV-----------------------TRSPLMLRLLEQARLVAQSDVSV 160 A T + V S +L LVA + +SV Sbjct: 121 KALPTPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTPMSV 180 Query: 161 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNR 220 LING SGTGKE A IH S R KPFIAI+CG++P++L SE FGH +G+FTGA++++ Sbjct: 181 LINGASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGALNDK 240 Query: 221 EGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDL 280 G F A GGTLFLDEIG++ +Q++LLR LQER++RP+GSN++I+++VR++SAT+ +L Sbjct: 241 TGAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATNENL 300 Query: 281 PKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDA 340 +A+ +G FREDLY+R+N +L++PAL ER EDI L AN L QA + F T A Sbjct: 301 QQAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFDTAA 360 Query: 341 MKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGE--NTALPTFVEARNQF 398 + L T SWPGN+RQL N++++ L S I+ A + L+ + TF Sbjct: 361 SQALQTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYELQEPIRSAGPQTFSLHDEAA 420 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + + L+ T N + AA + G +R Y L +++ Sbjct: 421 EKKRILEALKQTGNNKSKAAILLGIDRKTLYNKLKLYDI 459 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 171/451 (37%), Positives = 265/451 (58%), Gaps = 14/451 (3%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 K A +L+VDD+ ++ L L EGY V A SG + +L + DLV++DLRM +D Sbjct: 2 KGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGLD 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G+ + E +++ P V+++T H ++ AV A + G +LTKP + + +A+++ Sbjct: 62 GLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMDK 121 Query: 124 SAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + I+ SP + L++ R +A +D +VLI G++GTGKE+ Sbjct: 122 RRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKELV 181 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIH A + + F+A+NCGA E+LL SELFGH +GAF+GA+S ++GLF+ A GTLF Sbjct: 182 ARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTLF 241 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG+M +QV+LLRVLQER +G +++I + RI++AT+RDL + RG FR DL Sbjct: 242 LDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRADL 301 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 YYRLNV++L++P L+ R +DIPLLA + A V FS +A++RLM +PGN+ Sbjct: 302 YYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGNI 361 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTAL----PTFVEARNQFELNYLRKLLQI 409 R+L N++++ V + VI + Q L G+ AL + A + E ++R +L Sbjct: 362 RELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELERRHIRDILTY 421 Query: 410 TKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 GN T AA + G +R ++ + R L Sbjct: 422 CDGNKTRAAEILGIDRVSLWRKVKRLGLAVE 452 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 163/443 (36%), Positives = 238/443 (53%), Gaps = 15/443 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L DD+ L +L+ L L G+ V G + L D +I DL M M+G+Q Sbjct: 15 KILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMNGIQ 74 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS-- 124 + + +++ P ++LT S A+AA + G F +LTKP L + + Sbjct: 75 VIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAKREW 134 Query: 125 -----APATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A E +V S M ++ + + VA + +VL+ G++GTGKE+ A+A Sbjct: 135 VNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELVARA 194 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R KPF+A+NCGALPE L+ESELFGH +G+FTGA +R GLF+ A GGT+FLDE Sbjct: 195 VHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIFLDE 254 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG++P +Q KLLRVL+ ++R +G N ++VR++ ATHR+LP+ + G+FREDL YR Sbjct: 255 IGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDLMYR 314 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 +N L IP L ER +DI LA+HLLR+ K F+ +A++ L WPGNVR+L Sbjct: 315 INTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNVREL 374 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE-----ARNQFELNYLRKLLQITK 411 NVIE L I+ + Q L G T + E+ + + L Sbjct: 375 ANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALDRHN 434 Query: 412 GNVTHAARMAGRNRTEFYKLLSR 434 GN AA G + Y L++ Sbjct: 435 GNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 162/458 (35%), Positives = 242/458 (52%), Gaps = 19/458 (4%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS +L+ DDD +L L + + V A G + L++L VDLVI+D +M Sbjct: 1 MSR-DLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +DG +L ++ +P +++TAHGS+ + A + G +L KPVD + ++ Sbjct: 60 GLDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKT 119 Query: 121 L-------EQSAPATDERW---REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 L S + IV +SP M L E ++S +VLI G+SGTGK Sbjct: 120 LNINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+A+H P PF+A+NC A LESELFGH +GAFT A + G F+ A G Sbjct: 180 ELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDE+GD+PA +QVKLLRVLQ++ +G+ I + R+++AT+RDL + +G+FR Sbjct: 240 TLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLNV+ + PAL E EDIPLL +H L++ + ++ S AMK + WP Sbjct: 300 EDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALP--------TFVEARNQFELNY 402 GNVRQL N IE A+ +I A + + + P T E + E + Sbjct: 360 GNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVERIEKHM 419 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 + + L+ + HAAR G + ++ + L + Sbjct: 420 ILRALEQNQWVKAHAARTLGVSERVVSYKMANYGLTKD 457 >UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=2 Tax=Sulfurihydrogenibium RepID=C1DWP8_SULAA Length = 468 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 164/466 (35%), Positives = 269/466 (57%), Gaps = 24/466 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 ++L+VDD+ +L L EGY V + + E + ++ + DL+ISDL+M +M Sbjct: 2 EDKGYILIVDDEEDILVSFKEILEDEGYKVDISPNPKEAVEMVKQNDYDLIISDLKMPQM 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP--VDKDALYQAIDDA 120 G Q EI+K I+LTA+G++ AV + G F++++KP + D + I +A Sbjct: 62 TGDQFLKEIRKFNNVASFIVLTAYGTVETAVDCMKHGAFNYISKPIDFNDDRTWSMIKEA 121 Query: 121 LEQSAPATDERWR-------------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 +E + + + E I+T +PLM +L+ + +A D +VLI G+SG Sbjct: 122 IELAKYKKNTFFYKNYLSTLKNSSDIEGIITVNPLMKEILDYLKKIANFDFTVLIYGESG 181 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 GKE+FA+AIH S R +K F+ INC + + ++ESE FG +G FTGA ++R G+ + A Sbjct: 182 VGKELFAKAIHQLSNRRNKVFLPINCATISKDVMESEFFGVKKGVFTGADTDRPGILELA 241 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 +GGT+FLDEI +MP LQ K LR LQE++VR +G ++VR+I+AT++DL + + Sbjct: 242 DGGTVFLDEISEMPLDLQAKFLRFLQEKEVRRIGDTVSKKVDVRVIAATNKDLKQLVKEE 301 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 +FREDLY+RL + ++IP L ER EDIP+LA H L + ++++ ++ F+ +A++ L+ Sbjct: 302 KFREDLYFRLEGIKIEIPPLRERKEDIPVLAYHFLEEFNKKYQTDIKGFTEEALQLLVNY 361 Query: 348 SWPGNVRQLVNVIEQCVA--LTSSPVISDALVEQALEGENTALPTFVEAR-------NQF 398 W GNVRQL NV+ + L I + + + G++ + + F Sbjct: 362 HWEGNVRQLENVVREACIIALAKKEYIDVSCLPSYISGQDNSKAMIFDYNLAKKLNDQAF 421 Query: 399 ELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 YL+ LL TKGN++ AA++A R KLL ++ +D ++F++ Sbjct: 422 TTKYLKNLLAFTKGNISKAAKLANIERQSLQKLLKKYGVDPSEFRK 467 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 597 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 164/484 (33%), Positives = 248/484 (51%), Gaps = 49/484 (10%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKV-DLVISDLRMDEM 62 +L+VDDDP +L+ L EG++V AESG + + L D+V+ DL M + Sbjct: 1 MAKTVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGI 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G E++ PVI++TA G I V A Q G F KP + + +I +AL Sbjct: 61 SGQDTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALS 120 Query: 123 QSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 A + + ++ SP M+ + A+S + +LI G+SG GKE+ Sbjct: 121 MGALKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEV 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H +S R KPF+A+NCGA+PE L+ES LFGH +G+FTGA G FQ A GGTL Sbjct: 181 IARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTL 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDE+G++P +QVKLLR LQE ++ P+GS R + ++VRI+SAT+RDL +A+A G FRED Sbjct: 241 FLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRLNV ++ P+L ER EDIP L + +R+ V + + + L WPGN Sbjct: 301 LYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGN 360 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE---------------------------------Q 379 VRQL N + + + L +P + Sbjct: 361 VRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELAA 420 Query: 380 ALEGENTALPTFV-----EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 L +P ++ E + ++ +++ G+++ AR G R+ Y+ + Sbjct: 421 ELPQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVRE 480 Query: 435 HELD 438 + L+ Sbjct: 481 NGLE 484 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 597 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 164/453 (36%), Positives = 251/453 (55%), Gaps = 16/453 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS + H+L+VDD+ L +LL + L A+S + + L DL ++D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G++L I + P MP ++TA+GS+ A A + G + F+ KPV D L Q I+D Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 L + + ++ +P M+ L Q R +A+S + I+G+SG+GKE A+ IH Sbjct: 121 LGINEVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIARLIHTL 180 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 PR KPF+A+NCGA+P +L+ESE FGH +GAFTGAV +R+GLF+ A+GGTLFLDE+ D+ Sbjct: 181 GPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL 240 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +QVKLLR +QE+ VRP+G ++ +N+RI+ ATH++L M G FR+DL+YRLNV+ Sbjct: 241 PLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFYRLNVI 300 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 +P L ER EDIP L H+L + ++ + + S+DA+ + ++PGNVR+L N + Sbjct: 301 EAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRELENTL 360 Query: 361 EQCVALTSSPVISDALVEQA----------------LEGENTALPTFVEARNQFELNYLR 404 E+ + L I + + + E + E + Sbjct: 361 ERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIEKQEIL 420 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 K L T N T AA+ G L + EL Sbjct: 421 KALDTTHWNRTAAAKKLGMTFRSLRYRLKKLEL 453 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 183/447 (40%), Positives = 254/447 (56%), Gaps = 9/447 (2%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 + +L+V+D+ L +L L +EG+S ES + L ++ RE LV++D R+ M Sbjct: 2 RSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMS 61 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G +L A I++ P PV+I TA+G I AV A + G +LTKPVD+ L I AL Sbjct: 62 GTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSC 121 Query: 124 SA----PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 P + + R I+ SP L +LE LVA + +VLI G+SGTGKE+ A+ +H Sbjct: 122 RGHTNPPRSQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLHV 181 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 ASPR PF+A NCGA+P L+ESE+FGH +GAFTGAV ++ G + A GTLFLDE+GD Sbjct: 182 ASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEVGD 241 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MP +QVKLLR LQER+ LG N+ + + RII+ATH DL KA+ G FREDLYYRLNV Sbjct: 242 MPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRLNV 301 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 + L IP L ER ED+ L +H LR+ +T A+ + SWPGN+RQL N+ Sbjct: 302 IPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQLENI 361 Query: 360 IEQCVALTSSPVISDALVEQALE-GENTALPTFVEA--RNQFELNYLRKLLQITKGNVTH 416 +E+ V L I A + + E + F A + E + L + N + Sbjct: 362 VERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYDLHAVEREAVVSALNKAQSNKSQ 421 Query: 417 AARMAGRNRTEFYKLLSRHEL--DAND 441 AA + G +R + + + L D D Sbjct: 422 AALLLGISRKQLHTRMKNLGLIVDRED 448 >UniRef50_C5V657 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V657_9PROT Length = 464 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 170/438 (38%), Positives = 260/438 (59%), Gaps = 10/438 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +LLVDD+P +L+LL + L G V A E L L + DL ++D+RM + DG++ Sbjct: 24 SVLLVDDEPDILELLEMTLLKMGLVVDKAACVQEALAKLAANRYDLCLTDMRMPDGDGLE 83 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + I +PV ++TAHG++ +A+ + G F +L KP+ + L + AL P Sbjct: 84 VVKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQP 143 Query: 127 ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSK 186 + ++ +P M ++ + VA+S V I+G+SG+GKE+ A+ I + PR+ + Sbjct: 144 SPSADKL--LLGNAPAMQKVRDLIERVARSQAPVYISGESGSGKELAARLIVQSGPRSDQ 201 Query: 187 PFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQV 246 P IA+NCGA+PE L+ESE FG+ +GAFTGA +R+G FQAA GGTLFLDE+ D+P +QV Sbjct: 202 PVIAVNCGAIPENLMESEFFGYKKGAFTGADKDRDGFFQAANGGTLFLDEVADLPLTMQV 261 Query: 247 KLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA 306 KLLRV+QE++VR +GS + ++VR+ISATH+DL + + G+FR+DLYYRLNV+ +++P+ Sbjct: 262 KLLRVIQEKRVRKVGSTTEEPVDVRLISATHKDLAERVKSGQFRQDLYYRLNVIPIQMPS 321 Query: 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 L E EDI +A +L + FS +A++ L +PGNVR+L N+IE+ +AL Sbjct: 322 LRELREDIAQIAQQVLNRLRAGV---PTRFSDEALRVLQQYDFPGNVRELENIIERALAL 378 Query: 367 TSSPVISDALV-----EQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMA 421 S VI+ + EQA GE T ++ E L + LQ T N T AA++ Sbjct: 379 CSEGVIAAEDLCLSPVEQAEVGERTDKYPLPAYLDRVEKEALMEALQQTNFNRTAAAKLI 438 Query: 422 GRNRTEFYKLLSRHELDA 439 G + R + + Sbjct: 439 GLTFRTMRYRMERLGIKS 456 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 169/458 (36%), Positives = 258/458 (56%), Gaps = 18/458 (3%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 MS LL+V+D+P L + L EG++V A+ G +G + + D+++SDL M Sbjct: 1 MSVCGRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +M GM L ++ +QP V+I+TAHG++ AV A ++G F+ KP L + + Sbjct: 61 QMGGMDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNV 120 Query: 121 LEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + ++ +S M + + RLVA SD SVL+ G+SGTGK Sbjct: 121 CSTRLLREQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A A+H S R +K ++ ++C +LPE L+ESELFG+ RGAFTGA R G F+AA GG Sbjct: 181 EMVAAAVHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG++P QVKLLR LQER++ LGSNR +D+NVRI+SA+ R L + G FR Sbjct: 241 TLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL++R+N V++ +P L +R ED+P+LA L++ AE K + FS + ++ W Sbjct: 301 EDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWT 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTA--------LPTFVEARNQFELNY 402 GNVR+L NV+E+ V + + ++ G + + T EA + E+ Sbjct: 361 GNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVEKAEVRA 420 Query: 403 LRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAN 440 +R L T G AA + G +R ++ + H++ + Sbjct: 421 IRAALASTGGRRADAADLLGVSRKTLWEKIKHHDVTVD 458 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 243/477 (50%), Gaps = 45/477 (9%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 A LL++DDDP +L +L E V+ L+++ E+ ++ I D+ M Sbjct: 1 MTAKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGKS 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE- 122 G Q+ E +K+ PG+ +I+ T H + +A+ A + G + ++TKP D + L ++ ALE Sbjct: 61 GFQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALEC 120 Query: 123 ------------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 + +E + ++ S M+ + + VA SD +VLI G+SGTGK Sbjct: 121 NLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTGK 180 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ A+AI++ S R ++PF+A+NC ALPE LLESELFGH +GAFT A + R G F+ GG Sbjct: 181 ELLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNGG 240 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 T+FLDEIG+M Q KLLRVL+ ++ +G N I ++VRII+AT+R L ++ FR Sbjct: 241 TIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTFR 300 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 DL+YRL VV+ +P L +R EDIPLL + +++ + ++ +R + + L+ W Sbjct: 301 MDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPWE 360 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQ------------- 397 GN+R+L NVI S V+ +E L + ++ Sbjct: 361 GNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEPV 420 Query: 398 -------------------FELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 E + ++ + N AA++ G +R L R+ Sbjct: 421 FDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLERY 477 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 171/464 (36%), Positives = 260/464 (56%), Gaps = 26/464 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M H +L++DD+ L ++ RL +GY V+ A + EGL LN VD V+ D+++ Sbjct: 1 MKHSQ-KILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + DG+ L +I+++Q + VI+LT +G+I A+ A + G + +LTKP + L + A Sbjct: 60 DGDGLLLLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKA 119 Query: 121 LEQSAPATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 170 LE+ + IV S M LL R VAQ+D SVLI G+SG GK Sbjct: 120 LEKRRLLLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGK 179 Query: 171 EIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGG 230 E+ AQAIH S R ++P I +N GA+PE L+ESELFGH +GAFTGA + + GL + A+ G Sbjct: 180 ELIAQAIHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNG 239 Query: 231 TLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFR 290 TLFLDEIG+MP +QVKLLR L+ + R +G R ++VRI++AT+RDL + +A+G FR Sbjct: 240 TLFLDEIGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFR 299 Query: 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP 350 EDL+YRLN ++L +P L ER DI L +H L+ + + + + ++L+ +P Sbjct: 300 EDLFYRLNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFP 359 Query: 351 GNVRQLVNVIEQCVALTSSPVISDALV-----------EQALEGENTALPTFVE----AR 395 GN R+L ++IE+ L++ +I+ + A E L F E + Sbjct: 360 GNTRELFHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSL 419 Query: 396 NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 + E Y+ L+ KGN T A + G + Y+ L + + Sbjct: 420 DDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQTYGVSE 463 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 177/463 (38%), Positives = 264/463 (57%), Gaps = 27/463 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAE----SGAEGLRVLNREKVDLVISDL 57 S +L+VD+D + + LT GY A SG + L ++ E D++I++L Sbjct: 11 SEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITEL 70 Query: 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAI 117 MDE+DG+++ + P VI+LT H SI A+ A Q G ++LTKP+D L QA+ Sbjct: 71 MMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAV 130 Query: 118 DDALEQSAPAT----------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 167 D A + ++ E ++ SP M RL+E+ R VA +D +VLI G+SG Sbjct: 131 DRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESG 190 Query: 168 TGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA 227 TGKE+ A+AIH S R +KPF+ +N ALPE +LESELFGH GAFTGA + R G F+ A Sbjct: 191 TGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYA 250 Query: 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARG 287 GGTLFLDE+G+MP Q+KLLRVL+ER++ LG+N +I INVR+++AT+ DL + +G Sbjct: 251 NGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKG 310 Query: 288 EFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 FR+DLY+RL+VV++ +P L++R DIP L +H L+Q AER K + + + LM Sbjct: 311 TFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAY 370 Query: 348 SWPGNVRQLVNVIEQCVALTSSPVISDALVEQA-------------LEGENTALPTFVEA 394 +WPGN+R+L NV+E + L + + + ++ + Sbjct: 371 AWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRS 430 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 N E Y+ + L++T G AA + G Y+ + +EL Sbjct: 431 LNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREYEL 473 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 186/453 (41%), Positives = 252/453 (55%), Gaps = 25/453 (5%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 + + +L+VDD+ L +L L G+ + A +G E L +L ++ VDLVISDL M M Sbjct: 9 NPESRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGM 68 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G++ ++ PG+P I TA GSI AV+A +QG F +L KP+D I ALE Sbjct: 69 GGIEFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALE 128 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKE 171 + + + IVT+SP M +LE A VA S +V + G+SGTGKE Sbjct: 129 FARLSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKE 188 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+AIH AS F+A+NC A+PE LLESELFGH RGAFTGA +REG F A GGT Sbjct: 189 VLARAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGT 248 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 + LDEIGDMP PLQ KLLRVL+ER +G NR ++ R+I AT+RDL + + +G FRE Sbjct: 249 VLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFRE 308 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLY+R+NVV + IP L ER EDIPLL + L+ + + S AM L+ SWPG Sbjct: 309 DLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPG 368 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENT--------------ALPTFVEARNQ 397 NVR+L NV+E + S +I + + + +LP + + Sbjct: 369 NVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLDA 428 Query: 398 FELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 L LQ GN + AA + NR FY+ Sbjct: 429 VVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 595 bits (1536), Expect = e-169, Method: Composition-based stats. Identities = 163/461 (35%), Positives = 252/461 (54%), Gaps = 24/461 (5%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 + H+L+++D+ LL RL +GY + SG EGL+ + D+ + D+R+ Sbjct: 5 TSAVIHVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPG 64 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 MDG+Q+ ++++Q V+++T HG+I A+ A +QG + +LTKP+D L + AL Sbjct: 65 MDGIQVLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKAL 124 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 E+ A IV SP +L++++ R A D+ VLI G+SGTGKE Sbjct: 125 EKRRLADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKE 184 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+A+H+ S R KP+IAINCG LP LLESELFGH +GAF+GAV++R GL +AA GT Sbjct: 185 LIAKALHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGT 244 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDEIG++ LQ KLLR L+ + R +G+NR VR+++AT+++L +A+A G+FRE Sbjct: 245 LFLDEIGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFRE 304 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRL+ + L++P L ER DIPLL + L++ R+ +RL +PG Sbjct: 305 DLYYRLSGMVLRLPPLRERRGDIPLLVQYFLKR---RYPHRQPPIDPSVWERLEAYRFPG 361 Query: 352 NVRQLVNVIEQCVALTSSPVISDALV-----------EQALEGENTALPTFVEARNQFEL 400 NVR+L +++++ L ++S ++ + + Sbjct: 362 NVRELAHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMPLEEVRR 421 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 ++ L + GN AA G Y+ L L D Sbjct: 422 RHILATLAMVGGNKAVAAEKLGIGLRTLYRYLEEWNLAQQD 462 >UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMF5_9BACT Length = 449 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 176/450 (39%), Positives = 289/450 (64%), Gaps = 12/450 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM-D 63 +LLVDDD LL++L LR S GY+ A++ + + ++ + D + D+R+D+ Sbjct: 1 MTKVLLVDDDNSLLEILRLRFQSCGYTPFAADNSQKAVSLIKSDVFDAAVFDMRLDDGKT 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++L EI+++ +PVI LTA+G+I DAV + ++G FS+LTKP D L ++ A++Q Sbjct: 61 GLELLREIKEIDSELPVIFLTAYGTIDDAVQSMKEGAFSYLTKPFDYKELIAKVEKAVQQ 120 Query: 124 ----SAPAT------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 D + I+ +S + E+ + A+SD +V I G+SGTGKE+ Sbjct: 121 CSFSRQLLRINAEESDSPISKTIIGKSSKTKMIRERIAIAAKSDANVFIYGESGTGKELV 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ +H +S R+ KPF+A N A+PE L+ESELFG+ +GAFTGA ++G F+ A+GGT+F Sbjct: 181 ARMLHQSSLRSDKPFVAFNSSAIPETLMESELFGYEKGAFTGADKKKKGFFEQAQGGTVF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 +DEI +MP +Q KLLRVL+ R+V PLGS + I +++R+++A++++L + EFR DL Sbjct: 241 IDEISEMPVSMQTKLLRVLENREVSPLGSEKTIKLDIRLVTASNKNLKDKIENDEFRADL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YR++V+ +++PAL +R EDIPLL H L++ +R+ ++FS DA+ +++ WPGN+ Sbjct: 301 FYRIHVIEIEVPALRDRREDIPLLCGHFLKKYTDRYSLGTKSFSGDAIDKMVNYDWPGNI 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413 R+L NVIE V LTS I ++ A E E + EA+ +FE ++L++L++ +GN Sbjct: 361 RELQNVIECAVVLTSVGTIKGDNIKLAHESETYTQ-VYREAKKEFEASFLKQLMERAEGN 419 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDANDFK 443 ++ A+R++ R + Y LL +H +D DF+ Sbjct: 420 ISKASRISDIYRADLYDLLKKHSIDPADFR 449 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 257/488 (52%), Gaps = 55/488 (11%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 + +L+VDD+P + + L+ EGY+V A +G +G+ + D++I D + +++G Sbjct: 1 MSTILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ +++++ + VI+LTA+ S+P A+ A + G ++ KP D DA + E++ Sbjct: 61 IEVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKA 120 Query: 125 APATDERWREA-----------IVTRSPLMLRLLEQARLVAQS-DVSVLINGQSGTGKEI 172 R+ ++ S M ++ + VAQ+ D +VLI G+SG GKE Sbjct: 121 HLTNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEH 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+ IH S R +KPF+ +NC A+PE LLESELFGH GAFT A S + GLF+ A+GGT+ Sbjct: 181 IAKLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTI 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIGDMP Q K+L+VL+ ++ R +G RDI +VR+++AT++DL + RG FRED Sbjct: 241 FLDEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRL VV + IP L ER EDI LAN L + + S DA L++ +W GN Sbjct: 301 LYYRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLE-LSGDAASALLSYTWKGN 359 Query: 353 VRQLVNVIEQCVALTS-SPVISDALV--------EQALEGENTALP-------------- 389 VR+L NVIE+ V +T I + E A + E +P Sbjct: 360 VRELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQ 419 Query: 390 -------------------TFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 430 + Q E YL L+ T GN AA++ G R Sbjct: 420 AEQRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRY 479 Query: 431 LLSRHELD 438 + ++E+D Sbjct: 480 QMKKYEID 487 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 160/435 (36%), Positives = 255/435 (58%), Gaps = 9/435 (2%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ +L L L G+ AE+G + L L+ + D+++ D++MD MDG+ Sbjct: 2 KILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGLT 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + + +PVI++TA ++ AV + + G +LTKPVD L A++ EQS Sbjct: 62 FLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKINEQSGD 121 Query: 127 AT---DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPR 183 + + T+ + ++EQ +LVA +D +VLI G+SGTGKEI A++IH+ S R Sbjct: 122 VLTPVENYRFGGVYTQ-EGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDNSKR 180 Query: 184 NSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 +P++AINC AL E ++ESELFGH +GAFT AV + +GLF+AA+GGTLFLDEIG++ Sbjct: 181 AQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGELSLN 240 Query: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 +Q KLLRVLQE +G R + NVRI++AT+R+L K +G+FREDLY+RL V ++ Sbjct: 241 VQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVFPVE 300 Query: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363 +P L ER E+I L + + AE+ +++ +++L +PGN+R+L N++E+ Sbjct: 301 VPPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIVERS 360 Query: 364 VALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGR 423 + LT+ + + + L + E + + K L+ T GN T AA + Sbjct: 361 IILTTGTKLEPVTLPAFGTERDGGL-----SIRGNERDLIIKALKKTGGNKTKAAEILQI 415 Query: 424 NRTEFYKLLSRHELD 438 +R + L +L+ Sbjct: 416 SRRTLHNKLKEFDLE 430 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 159/455 (34%), Positives = 238/455 (52%), Gaps = 23/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +++VDD+ +L L LT GY A + GL ++ + K DLV+ DL + + DG+ Sbjct: 9 KIVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADGLD 68 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 + E++ P +PVIILTA+ S+ +AV + +QG F F++KP + L I A+EQ Sbjct: 69 VLKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQRQL 128 Query: 127 ATDERWREA-----------------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 169 + V +S M + + A +D +VL+ G+SG G Sbjct: 129 QREAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESGVG 188 Query: 170 KEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 KE+ A +H S R P + +NC A P ++E ELFG+ +GAFTGAV++ G+ A G Sbjct: 189 KEVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQATG 248 Query: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 GTLFLDEI +MP LQ + LRVLQER+ R LGS + I N R+++AT+R+ +A+ G Sbjct: 249 GTLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNGTL 308 Query: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 R+DLYYRLN ++IPAL ER EDIP L L + A++ + +A RL+ W Sbjct: 309 RQDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNYDW 368 Query: 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENT------ALPTFVEARNQFELNYL 403 PGNVR+L N IE V L +I+ + + ++ A E + Sbjct: 369 PGNVRELQNAIEYSVVLADQALITVKELPREIQLPAALHEARAANAAASLNLEDQERQAI 428 Query: 404 RKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + L GN AA + G +R Y + H ++ Sbjct: 429 LQALTQAHGNKKKAAAILGIHRPTLYNKMKHHGIN 463 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 161/484 (33%), Positives = 248/484 (51%), Gaps = 47/484 (9%) Query: 1 MS-HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRM 59 M+ H +L+VDD+ L + ++ A SG E L +L +V ++++D RM Sbjct: 1 MTQHADYPILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRM 59 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQG-VFSFLTKPVDKDALYQAID 118 M G++L + ++QP IILTA+ + V A G ++ ++TKP + L + Sbjct: 60 PRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILT 119 Query: 119 DALEQSAPATDERWR---------------------EAIVTRSPLMLRLLEQARLVAQSD 157 ALE+ A + + I+ S + +L + VA ++ Sbjct: 120 HALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTN 179 Query: 158 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAV 217 +VL+ G++GTGKE+ A AIH S R ++PF+ +NC AL +LESELFGH +GAFTGAV Sbjct: 180 STVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAV 239 Query: 218 SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATH 277 + R G F+ A+GGTLFLDE GD+P +Q+KLLR LQER+ +G + I ++VR+ISAT+ Sbjct: 240 AQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATN 299 Query: 278 RDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFS 337 RDL + G FREDLYYRLNV + +P L +R ED+P L H + + A Sbjct: 300 RDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVR 359 Query: 338 TDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTAL--------- 388 A+ +L + +WPGNVR+L N+IE+ + L + ++ +N Sbjct: 360 GAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVIS 419 Query: 389 --------------PTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E E + ++ + N+ AARM G NR+ Y + + Sbjct: 420 ETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRK 479 Query: 435 HELD 438 H L+ Sbjct: 480 HGLE 483 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 152/452 (33%), Positives = 235/452 (51%), Gaps = 19/452 (4%) Query: 11 VDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAE 70 V+D + L L G + +G + + L DL++ DLR+ +M GM + Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 71 IQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPATDE 130 ++ P +P+I +TAHGSI AV A + G FL KP + D L +++A+ +++ ++ Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 ------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRN 184 + + + S M ++ A S S+ I G+SGTGKE+ A+AIH AS R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 185 SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPL 244 KPFIAINC A+P+ L+ESELFGH +GAFTGA ++R+G + A+GGTLFLDE+ +M L Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 245 QVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 Q KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ L + Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364 P L ER ED+ +A LL + FS + R WPGNVRQL NV+ V Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 365 ALTSSPVISDALVEQALEGENTALPTFVEARNQF------------ELNYLRKLLQITKG 412 L + I+ ++ L + ++ E + + ++ G Sbjct: 362 VLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACDG 421 Query: 413 NVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 N+ AA + + Y+ L + + ++ Sbjct: 422 NIPRAAGYLDVSPSTIYRKLQAWN-EKEEKQK 452 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 160/447 (35%), Positives = 256/447 (57%), Gaps = 15/447 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE-MD 63 A +L+V+D+ K+L L G V +SG E ++ +++ ++ISD+R+ + Sbjct: 3 KARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGNIS 62 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 GM L + +++ ++++TA G I AV A + G FS++TKP + + + +D + Q Sbjct: 63 GMDLLRDAKELY-DPSILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMMLQ 121 Query: 124 SAP---------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + R I+ S M L+ A A+SD ++LI G+SGTGKE+ A Sbjct: 122 QRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKELIA 181 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 +AI+ S R +K F+AINC L ++ LES LFGH +G++TGA+ ++ GLF+ A+GGTLF+ Sbjct: 182 KAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTLFM 241 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DE+GD +Q K+LRVLQE + PLGS NVRII+AT++DL +++ + EFREDLY Sbjct: 242 DEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFREDLY 301 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRLNV+++ +P L ER DIPLL NH +++ + V + + + LM WPGNVR Sbjct: 302 YRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGNVR 361 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF----VEARNQFELNYLRKLLQIT 410 +L NVIE+ + L S ++ + + + +P + + E + K LQ+T Sbjct: 362 ELENVIERTMVLCSGNKLAKKHLPGCVLPQKGDIPPITIAPGTSWKEAEKELIMKTLQLT 421 Query: 411 KGNVTHAARMAGRNRTEFYKLLSRHEL 437 +GN AA+M G + + + + Sbjct: 422 RGNKQEAAKMLGISLRKIEYRVKEWGI 448 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 170/482 (35%), Positives = 256/482 (53%), Gaps = 43/482 (8%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ LL+VDDDP +L+ + L L + Y VVTA + A+GL + D V+ D+++ Sbjct: 1 MNDCR-TLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLP 59 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L E +++ +PVI++T HG+ A+ A G F ++TKP + D + ID A Sbjct: 60 DQSGLALIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSA 119 Query: 121 LEQSAPATDERWR----------------EAIVTRSPLMLRLLEQARLVAQSDVSVLING 164 LE S A + I+ P M+ + VA D +VLI G Sbjct: 120 LETSRMARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILG 179 Query: 165 QSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF 224 ++GTGKE+ A+AI+ S R+ + F AINC A+PE LLESELFGH RG+FTGA R G F Sbjct: 180 ETGTGKEVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKF 239 Query: 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAM 284 + GGTLFLDEIGDM +Q KLLRVLQE++ +G ++ I +VRI++AT+RDL AM Sbjct: 240 EICNGGTLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAM 299 Query: 285 ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRL 344 A G FR DL+YRLN ++++P L ER ED+ +A H A++ + + + M+RL Sbjct: 300 ADGSFRSDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRL 359 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF------------- 391 M SWPGNVR+L +++Q + S PVI A + ++ Sbjct: 360 MAHSWPGNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEISNGWESEVSKE 419 Query: 392 -------------VEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 + N+ + +R++++ T N++ A+ G +R + L Sbjct: 420 INRRLASGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMKHLRLK 479 Query: 439 AN 440 Sbjct: 480 PE 481 >UniRef50_C4ZIM7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Betaproteobacteria RepID=C4ZIM7_THASP Length = 451 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 165/444 (37%), Positives = 238/444 (53%), Gaps = 4/444 (0%) Query: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 S + L++DD + + L R EG+ V +GAE L + +V+SD+R+ + Sbjct: 6 STPQPRICLIEDDEIIGESLSDRFRLEGFDVDWCRTGAEARDALATRRHAVVVSDIRLPD 65 Query: 62 MDGMQLFAEIQKVQPGMP-VIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 +G LF E+ P +P + +TA G+I AVA + G ++TKP D DAL + Sbjct: 66 CNGGDLFIELLAEAPALPPFLFMTAFGAIERAVALIKAGAADYITKPFDPDALVAKVCAL 125 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E+ A R+ + SP M R+ E +A+ S+LI G+SG GKE A+ H Sbjct: 126 AERYGVARTASGRDERLGVSPAMGRIAENMPRLARHTESLLITGESGVGKEHVARLFHYH 185 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 + PF+A+NC A+PE L+ESELFG+ +GAFTGA R G F+ A+GGTLFLDEIGDM Sbjct: 186 AAGGEAPFVAVNCAAIPESLIESELFGYEKGAFTGAAKARRGYFEQAQGGTLFLDEIGDM 245 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P +Q KLLRVLQE +++ LG I ++ R++ ATH DL + G FREDLYYR+NV+ Sbjct: 246 PLSMQAKLLRVLQEHRLQRLGGETTIAVDFRLVCATHCDLKAMVEEGRFREDLYYRINVI 305 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 L+IP L ER EDI H + H R + L W GNVR+L + + Sbjct: 306 HLRIPPLRERKEDIVWFMQHFVEAFNRAHPEEARRIDPRTQEALARYPWSGNVRELKHAV 365 Query: 361 EQCVALTSSPVISDALV---EQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHA 417 E+ L+ PV+ +Q + E + E +YLR +L+ G++TH+ Sbjct: 366 ERACILSPGPVLGADAFFGEDQDVGAEAPTSRPLADYLMDCERDYLRMVLEQHGGHMTHS 425 Query: 418 ARMAGRNRTEFYKLLSRHELDAND 441 A G R ++ + R L A D Sbjct: 426 AEALGITRKTLWEKMRRLGLQARD 449 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 156/465 (33%), Positives = 244/465 (52%), Gaps = 32/465 (6%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A + +VDD+ L+ L + LT +GY V L L + DL++ DLR+ +M+G Sbjct: 1 MAEIAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ +I+ + +P +++TAHG + AV A + G F +L KP D + L I L ++ Sbjct: 61 LEVLRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEA 120 Query: 125 APATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVS-VLINGQSGTGKEIF 173 + E I+ SP ML L + + ++ + VLI G+SGTGK++ Sbjct: 121 QLVKEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLL 180 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+AIHN +PR+ +PFI INC +LPE LLESELFGH +GAFT A + + GL + A GTLF Sbjct: 181 AKAIHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLF 240 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ LQ KLL+ ++ + R +G ++ +NV II+AT+R+L +A+ FR+DL Sbjct: 241 LDEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDL 300 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 +YRLNVV L P L +R EDI + ++ L + + + + DA + WPGNV Sbjct: 301 FYRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNV 360 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQALEGENTALP---------------------TFV 392 R+L N+IE+ V L+ I+ + + A Sbjct: 361 RELKNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMD 420 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E E + L+ T AA+ G +R + +SR ++ Sbjct: 421 EILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 249/488 (51%), Gaps = 59/488 (12%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L++DD+ L +L RL GY ++ A + EG+ +L + V+ D+R+ + DG+Q Sbjct: 6 RVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDGLQ 65 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L ++K QP + VI+LT HG++ A+ A + G + +LTKP + L + ALEQ Sbjct: 66 LLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQRKL 125 Query: 127 ATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + I+ S M L R +AQ+D VL+ G+SGTGKE+FA+A Sbjct: 126 MVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFARA 185 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H SPR+ + +I +N GA+ E L+ESELFGH +GAFTGA + + GL + A+ GTLFLDE Sbjct: 186 LHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFLDE 245 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 IG+MP LQVKLLR ++ + R +G NR +NVRI++AT+R+LP+ + G FR+DLYYR Sbjct: 246 IGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLYYR 305 Query: 297 LNVVSLKIPALAERTEDIPLLANHL----LRQAAERHKPFVRA--------FSTDAMKRL 344 L + L IP L ER DI LA H LR+ + + + + + L Sbjct: 306 LTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQEAL 365 Query: 345 MTASWPGNVRQLVNVIEQCVALTSSPVISDAL-----------------VEQALEGENTA 387 + +PGNVR+L +++E+ + L P+I + Sbjct: 366 LAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAEMD 425 Query: 388 LPTFVE--------------------ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTE 427 + + E +Y+ ++ GN AAR+ G + Sbjct: 426 EKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISVRN 485 Query: 428 FYKLLSRH 435 Y+ + + Sbjct: 486 LYRKMEEY 493 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 149/455 (32%), Positives = 254/455 (55%), Gaps = 24/455 (5%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 LL+V+D+ LL RLT + ++ A + + L L + D+++ D R+ + +G+ Sbjct: 2 KLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGLS 61 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 L +++ P + V++LT HGS+ A+ + +QG + +LTKP + L + A E+ Sbjct: 62 LLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKRL 121 Query: 127 ATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 A E I+ +S + L++ V S+ ++L+ G+SG+GKE+ A++ Sbjct: 122 AEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIARS 181 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R KPF A+NC ALP QL+ESELFGH +GAFTGA + GL + A+GGTLFLDE Sbjct: 182 LHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLDE 241 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I +M +Q KLLR+L+ + +G+ R + +R+++AT++ L + +A G FREDLY+R Sbjct: 242 IAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYHR 301 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 LNVV +++P L R DIPLLA++LL Q ++ + S +A++ L++ +PGNVR+L Sbjct: 302 LNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNN--PKVLSPEALEVLLSYDFPGNVREL 359 Query: 357 VNVIEQCVALTSSPVISDALV---------EQALEGENTALPTFVEA---RNQFELNYLR 404 N++E+ L+ P I + + +G P + + E ++ Sbjct: 360 ANILERGCLLSYGPTIEAEHLFQPQMGKRTPVSKKGLEEEAPRWGDTDLSLENCERQHIL 419 Query: 405 KLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 ++L++ N T AA+ Y+ + + ++ Sbjct: 420 RVLKMAGENKTKAAQELKIGLKTLYRKVKEYGIEP 454 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 139/441 (31%), Positives = 233/441 (52%), Gaps = 11/441 (2%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 +L+VDD+ + KL L S G ++ T S E L++ D++I D+R+ + +G++L Sbjct: 9 ILVVDDESNIRKLFSRELASPGRTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDANGLEL 68 Query: 68 FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127 ++ + P + +I++T + + +AV A + G + ++TKP D + Q I+ A ++ Sbjct: 69 MTKLLETVPNVAIILITGYADVDNAVQAMKNGAYDYITKPFSLDRMEQVIEKAYQRVRLQ 128 Query: 128 TDERWRE---------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + + S + + A +DV VL+ G+SGTGK + A A+H Sbjct: 129 RENELLRHNSEHKSMPKFIGHSKSVQDVRYLIEKAAPTDVPVLLTGESGTGKNVAAAALH 188 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 S R +P I NCG ++LL SELFG+ +GAFTGA + +GL A TLF DE+G Sbjct: 189 AKSRRADQPLIIKNCGTFDKELLRSELFGYCKGAFTGADRSHDGLLSLAHKATLFFDEVG 248 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 ++ LQ LLRVL+ + R +G + ++VR I AT++DL K +A G F + Y+R+N Sbjct: 249 ELTLELQGALLRVLETQHFRRVGDKEERCVDVRFIFATNKDLEKEVAAGRFHDAFYHRIN 308 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V ++++P L ER EDIP L + L A+ S AM++LM WPGNVR+L N Sbjct: 309 VFNIELPPLRERREDIPALVEYFLVSLAKDG--QEYKISPRAMQQLMDNPWPGNVRELKN 366 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAA 418 +IE+ + L + +I+ + + + E +++ ++ +GN + AA Sbjct: 367 IIERGMILAENNIINVQALPFCQKSCQNPREKGFSTLEELERSHISMVMHAVQGNKSRAA 426 Query: 419 RMAGRNRTEFYKLLSRHELDA 439 ++ G R Y+ L + L Sbjct: 427 QVLGIGRKTLYRKLEEYRLTE 447 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 171/498 (34%), Positives = 258/498 (51%), Gaps = 69/498 (13%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE--M 62 A +LLVDD+ +++++ L +EG+ V + + + L ++V++DL +D+ Sbjct: 1 MAKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRA 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G+++ + + + P VI++TA GSI AV A + G + +L KP D L I AL Sbjct: 61 HGLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALS 120 Query: 123 QSAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + ++ + I+ + M + + A +D ++LI G+SGTGKE+ Sbjct: 121 YNEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKEL 180 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A+A+H S R PFI +NC ALPE LLESELFGH +G+FTGA+++++GLFQ A+GGT+ Sbjct: 181 VARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTI 240 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG M + LQ +LLRVLQER+VR +G N INVR+++AT+ L K + G FRED Sbjct: 241 FLDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFRED 300 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLR-QAAERHKPFVRAFSTDAMKRLMTASWPG 351 LYYRLNV+S+++P+L ER +DIPLLA H LR + R V+ + A+ L T WPG Sbjct: 301 LYYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPG 359 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQ-------------------------------- 379 NVR+L N IE+ L +I + Sbjct: 360 NVRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTS 419 Query: 380 ------ALEGENTALP-----------------TFVEARNQFELNYLRKLLQITKGNVTH 416 A+ G + L + + + EL YL + L + G+ Sbjct: 420 LVPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEK 479 Query: 417 AARMAGRNRTEFYKLLSR 434 A G + Y+ LS Sbjct: 480 TALHLGISLATLYRKLSE 497 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 163/447 (36%), Positives = 247/447 (55%), Gaps = 20/447 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDD+ + LL + + + V A+ GAE L +++ D+VI+D++M +DG Sbjct: 1 MARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDG 60 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 L +I + PV+ +TA ++ AV A + G +LTKP +++++ ++ L+ S Sbjct: 61 TGLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLS 120 Query: 125 APATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 + R + ++ S +M +++ A V +SD ++LI+G+SGTGKE+ A Sbjct: 121 RIMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLA 180 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + IH S R+ K F+ +NC A+ L+ESELFG+ +GAFTGA G F+ A GGTLFL Sbjct: 181 KYIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFL 240 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIGD+P Q KLLR LQE+K++ +G N +I ++VRI+ ATH+DL + + FR DLY Sbjct: 241 DEIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLY 300 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YR+NV L P L ER EDIP LA H L+ E + A + L WPGNVR Sbjct: 301 YRINVFPLSPPPLRERKEDIPALAVHFLK---ESFNGNDVVLTDGAKRLLAQYPWPGNVR 357 Query: 355 QLVNVIEQCVALTSSPVISDALVEQALEGENTA-------LPTFVEARNQFELNYLRKLL 407 +L N IE+ V L + I+ + + LP E + +R+ L Sbjct: 358 ELANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIVRQAL 417 Query: 408 QITKGNVTHAARMAGRNRTEFYKLLSR 434 + N T AA+M G R +F L+ R Sbjct: 418 DMAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 168/462 (36%), Positives = 252/462 (54%), Gaps = 32/462 (6%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 A +L+VDD+ + + L ++V TA G E + +L E DLV++DLRM + Sbjct: 2 KDSARILIVDDEHNTREAMARYLRLR-FNVATAADGGEAIELLKHEDFDLVLTDLRMPKA 60 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DGM + I+LTA+GSI DAVAA ++G F F+ KPV D L ID AL Sbjct: 61 DGMSVLEATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAALA 120 Query: 123 QSAPATDERWRE-----------------AIV--TRSPL--MLRLLEQARLVAQSDVSVL 161 A +++ + IV T P M +++ + VA + +VL Sbjct: 121 ARRKAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTVL 180 Query: 162 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNRE 221 + G+SGTGKE+FA+ IH+ S R + F+ ++C AL LLESELFG+ +GAFTGA + Sbjct: 181 LTGESGTGKEVFARMIHDWSGR-TGYFVPVHCAALTATLLESELFGYEKGAFTGAAERHK 239 Query: 222 GLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLP 281 G F+ A+ GTLFLDEIG++ QVKLLRVL+ R +G I ++VR+++AT+RDL Sbjct: 240 GRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNRDLR 299 Query: 282 KAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAM 341 K ++ G FREDL+YRL+VV+L++P L +R DIP L + + + A ++ V + DA+ Sbjct: 300 KMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVTGIAPDAL 359 Query: 342 KRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV--------- 392 L+ WPGN+R+L N IE V L ++ + + +A+ +P Sbjct: 360 AELVAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAATAPEPEI 419 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSR 434 E E + K L GN T AA++ G +R ++ L+ Sbjct: 420 ETFENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRLAE 461 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 155/449 (34%), Positives = 240/449 (53%), Gaps = 13/449 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 ++L+VDD+ + + L G+ S E L+ + D V++DL+M MDG Sbjct: 10 TGNVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDG 69 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++L +I++ +P++++TAHGS+ AV A + G +L KP++ D L ++ LE + Sbjct: 70 LELVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLESA 129 Query: 125 APATD-------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAI 177 A E + A++ S M ++ +Q VA +D +VLI G+SG GKE+ A+ I Sbjct: 130 ASGDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTI 189 Query: 178 HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEI 237 H +S R + I++NC L L+ESELFGH RGAFT A S R G F+ AE GT+ LDEI Sbjct: 190 HESSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEI 249 Query: 238 GDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRL 297 ++ LQ KLLRVLQER +GS+ ++ +VR+++ ++RDLP + G FR DLYYRL Sbjct: 250 SEIDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRL 309 Query: 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLV 357 VV +++P L +R +DIPLL ++ L+Q A R + V +A+ LM WPGNVR+L Sbjct: 310 AVVPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELE 369 Query: 358 NVIEQCVALTSSPVISDALV------EQALEGENTALPTFVEARNQFELNYLRKLLQITK 411 N++ + L IS E E ++ ++ E + L+ Sbjct: 370 NIVTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVKLDEMERRLISATLEHYD 429 Query: 412 GNVTHAARMAGRNRTEFYKLLSRHELDAN 440 G+ A G + L + L Sbjct: 430 GHREKTAAALGISPRTLSNKLRSYGLAPR 458 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 592 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 155/466 (33%), Positives = 235/466 (50%), Gaps = 32/466 (6%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 ++ +L+VDD+ L +++ G TA G E L LN D++++DL M + Sbjct: 2 NQQIRVLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPGL 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQ-QGVFSFLTKPVDKDALYQAIDDAL 121 DG +++ P I+LTA+G+I AV G + FL KP+ L + A Sbjct: 62 DGFGFLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAG 121 Query: 122 EQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + ++R E +V +SP M + + S VLI G+SGTGKE Sbjct: 122 SHAELNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKE 181 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + A+ +H SPR PF+AINC ALPE L+ESELFGH +G+FTGA R G F+ A+ GT Sbjct: 182 MVARTLHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGT 241 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 L LDEIG+MP Q KLLR+L++ KVR LG + +++VR+++AT++ +A+ G RE Sbjct: 242 LLLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLRE 301 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DL+YRLNV + +P L +R +DI +A+ L+ +H+ V + M L +WPG Sbjct: 302 DLFYRLNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPG 361 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVE------------------ 393 NVR+L NV+E+ V L I + L+ + E Sbjct: 362 NVRELRNVLERAVILAGEGTIEVKHLPVFLQNRPATVVASDEPAAVAATAADDLETVRFL 421 Query: 394 ---ARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 + E + + L+ T N T AA + G + + L + Sbjct: 422 IGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLKEYG 467 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 169/480 (35%), Positives = 241/480 (50%), Gaps = 49/480 (10%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 A +L VDD+ + +L L G++ V A + E L+VL R +DL+ISD RM + Sbjct: 38 AAMATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLIISDYRMPGL 97 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 G++ + + +P+I+LT H SI AV + + G ++TKPV L A+D ALE Sbjct: 98 TGLEFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQLELAVDQALE 157 Query: 123 QSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 + R I+ SP + R+L+ + A + +VL+ G+SGTGKE+ Sbjct: 158 FVRLRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKEL 217 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 FA+AIH+ S R KPFI +NC ALPE L+ES LFGH +GAFTGA+ EG F+ A GTL Sbjct: 218 FARAIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTL 277 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 LDEI +M LQ KLLRVLQE++ +G I ++VRI++ T+RDL G FR+D Sbjct: 278 LLDEISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQD 337 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LYYRL+ + + IP L +R ED+P+LA + A + S DA++ L WPGN Sbjct: 338 LYYRLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKKIEGLSQDALESLQQYPWPGN 397 Query: 353 VRQLVNVIEQCVALTSSPVISDALVE------------QALEGENTALPTFVEAR----- 395 +R+L +VIE+ V LT P+I +E + A P Sbjct: 398 IRELQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPNMRPRAIATPGAQPVLAVSGA 457 Query: 396 ----------------------NQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLS 433 E ++ L N T AA M G + L+ Sbjct: 458 AAAPGSMNTPPNGGIALSSLNVADAERVLIQHALAAADNNRTKAADMLGISVRTLRNKLN 517 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 161/454 (35%), Positives = 241/454 (53%), Gaps = 24/454 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ +L+V+DDP L + + L G V + G L+VL + +V+SD+RM Sbjct: 1 MAEHNLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMM 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG+ L EI+ P +PV+++TA+ + AV A + G FL KP + AL I+ Sbjct: 61 PMDGITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK- 119 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 + +V P L A+ VAQ+D +VL+ G+SG GKE+ A+ IH Sbjct: 120 ---YELPASDDG-SGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHRQ 175 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R + PF+AINC A+P+ LLE+ LFG+ +GAFTGA + G F+ A+ GTL LDE+ +M Sbjct: 176 SARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLDEVTEM 235 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 P LQ KLLRVLQER+V +G + + +N+RII+ ++RD+ +A+A+G FREDLYYRLNV Sbjct: 236 PMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYYRLNVF 295 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 + IP+L +R DI +A H + + R + S A L SWPGNVR+L NVI Sbjct: 296 PVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRELENVI 355 Query: 361 EQCVALTSSPVISDALVEQALEG-------ENTALPTFVE------------ARNQFELN 401 ++ + + + I ++ A + A P VE E Sbjct: 356 QRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDTDKKVDNMKDLERE 415 Query: 402 YLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 ++ + L G+ A G + L ++ Sbjct: 416 HILRTLAEVGGSRKKAIERLGISERTLRYKLQQY 449 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 155/465 (33%), Positives = 244/465 (52%), Gaps = 24/465 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + ++DDD + +L L Y+V+ + E + N + DL++SD++M Sbjct: 1 MNSSKKKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 G+Q +++ P +PVII+TA + AV + G + +L KP D D I+ A Sbjct: 61 GESGLQFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSA 120 Query: 121 LEQSAPATDE-RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHN 179 + A ++ I+ S M + +Q +++SD S+LI G+SGTGKE+ A+AIH+ Sbjct: 121 FKDEADELNDIDSTNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAKAIHD 180 Query: 180 ASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGD 239 S R KPF+A+N A+P+ LLESELFG+ +GAFTGA S+++G F+ A+ GTLFLDEI D Sbjct: 181 NSLRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLDEIAD 240 Query: 240 MPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNV 299 MP LQ KLLRVL + + LGS+ I NV+II+ATH+DL + FREDL++RLNV Sbjct: 241 MPIDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFHRLNV 300 Query: 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNV 359 +++++P L ER DI LLA L Q+A+ ++ + + +W GN+RQL N+ Sbjct: 301 ITIQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQLRNI 360 Query: 360 IEQCVALTSSPVISDALVEQALEGENT-ALPTF----------------------VEARN 396 ++ I + + L EN P+F Sbjct: 361 CHWLTVMSPGKEIGVSDLPTELLKENIYNKPSFNWEDNLELVIQNDILNNETNIYDTYIE 420 Query: 397 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + E ++ L+ G AA + G R + + + ++ Sbjct: 421 KLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIKDINISHDE 465 >UniRef50_C5CF13 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF13_KOSOT Length = 446 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 160/450 (35%), Positives = 243/450 (54%), Gaps = 23/450 (5%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMD 63 LL+VDDD +L L SEGY V A +L E D + D+R+ + D Sbjct: 1 MKRKLLVVDDDMAFNLILCEALESEGYLVTKAHDLKSAKELLQEESFDCALLDIRLPDGD 60 Query: 64 GMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123 G++L + VI+++AHG+I AV+A ++G ++FL KP D + ++ AL+ Sbjct: 61 GIELIDFARSQ--ETIVIVMSAHGNIETAVSAVKKGAYNFLEKPFDLNHALVEVERALKF 118 Query: 124 SAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 + + R + ++ S ++ + + +A V+VLI G+SGTGKE+ Sbjct: 119 AELQREHRLLLKKVKQLGFTDELLGVSESIVSIKKLIENIAPKKVTVLIQGESGTGKEVI 178 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ IH S R F+ INCGA+PE L ESE+FG+ +GAFTGA +++GL + A+ GTLF Sbjct: 179 ARMIHKLSGRKE--FVDINCGAIPENLFESEIFGYEKGAFTGAGDSKKGLVEEADRGTLF 236 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEI ++P LQ KLLR ++ + +GS + +VRII AT+RDL K + G+FREDL Sbjct: 237 LDEISELPITLQPKLLRFIETGTFQRIGSTKRKKTDVRIICATNRDLEKLVEEGKFREDL 296 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHK-PFVRAFSTDAMKRLMTASWPGN 352 +YRLNVV +K+P L ER EDI +LA ++ + S ++ LM WPGN Sbjct: 297 FYRLNVVRIKLPPLRERPEDIAILAKQFVKDISAELGLRKRPKISETFIQALMNYHWPGN 356 Query: 353 VRQLVNVIEQCVALT---SSPVISDALVEQALEGE---NTALPTFVEARNQFELNYLRKL 406 VR+L N + L SS + + ++ L + + E Y+RKL Sbjct: 357 VRELRNCL--LSILAVHDSSETLEEWMLFDVLGSRIDNSRDASNEDLTLEELEKRYIRKL 414 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHE 436 L+ GN T A++ G +++ Y+ L R E Sbjct: 415 LKKYSGNKTKVAQVLGISKSTLYEKLKRWE 444 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 156/443 (35%), Positives = 247/443 (55%), Gaps = 17/443 (3%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 P ++L+VDD+ + +LL L S + TA +G E L + + D+++ D+ + + +G Sbjct: 10 PINILVVDDEKSIRRLLEKELASARRCITTAGNGREALIAIRKNVFDVIVLDISLPDANG 69 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA---- 120 ++L + + G+ +I++T +G + DAV A + G ++TKP D L Q I+ A Sbjct: 70 IELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAYQIG 129 Query: 121 -------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIF 173 L+Q + + + IV S M + VA + V VL+ G+SGTGK + Sbjct: 130 SLHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLVTGESGTGKNVV 189 Query: 174 AQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 A+ +H S R P I NC L E+L+ SELFG+ +GAFTGA +R+GL A+ GTLF Sbjct: 190 ARQLHGLSLRGEYPLITKNCATLQEELIRSELFGYCKGAFTGAEDSRDGLLDLADKGTLF 249 Query: 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDL 293 LDEIG++ +Q LLRV++ + RP+G + +++R + AT+RDL + +A+G F E L Sbjct: 250 LDEIGELSVGVQASLLRVMENQTFRPVGDKHERKVDIRFVFATNRDLKEEVAKGRFSEAL 309 Query: 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 ++RLNV ++KI L +R E+IP+L + L Q + S +AMKRLM WPGNV Sbjct: 310 FHRLNVFAIKILPLRKRKEEIPVLMEYFLGQIST--GSPPCMVSKNAMKRLMAYDWPGNV 367 Query: 354 RQLVNVIEQCVALTSSPVISDALVEQAL----EGENTALPTFVEARNQFELNYLRKLLQI 409 R+L NV+E+ V L + +I++ + L EG T + + NY+ K+L Sbjct: 368 RELYNVMERGVILADNNIITERCLPLELLETTEGTEDKNSTLFPTLEELDKNYIMKVLDH 427 Query: 410 TKGNVTHAARMAGRNRTEFYKLL 432 GN + AA + G +R Y+ L Sbjct: 428 VDGNRSKAAEILGISRKTLYRKL 450 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 149/444 (33%), Positives = 234/444 (52%), Gaps = 18/444 (4%) Query: 11 VDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAE 70 V+D + L LT + +G + + + R + DL++ DLR+ +M GM + Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 71 IQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPATD- 129 +++ P +P++ +TAHGSI AV A + G FL KP + D L +++A+ +++ + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 130 ----ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 + + + S M + A S S+ I G+SGTGKE+ A+AIH AS R Sbjct: 122 VDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGD 181 Query: 186 KPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQ 245 KPFIAINC A+P+ L+ESELFGH +GAFTGA + R+G +AA+GGTLFLDE+ +M LQ Sbjct: 182 KPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQ 241 Query: 246 VKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305 KLLR +Q + +GS++ ++VR + AT+RD K + G FREDLYYRL V+ L +P Sbjct: 242 TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLP 301 Query: 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 L R +D+ +A LL ++ S + ++R WPGNVRQL NV+ V Sbjct: 302 PLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVV 361 Query: 366 LTSSPVISDALVEQALEGENTAL-------PTFVEARNQF------ELNYLRKLLQITKG 412 L I+ ++ L + + + ++ E + + ++ G Sbjct: 362 LNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDG 421 Query: 413 NVTHAARMAGRNRTEFYKLLSRHE 436 N+ AA + + Y+ L Sbjct: 422 NIPRAATYLDVSPSTIYRKLQTWN 445 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 145/448 (32%), Positives = 250/448 (55%), Gaps = 11/448 (2%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 +L++DDD L+LL + + GY+V + + GL D+++ D+R+ +MDG Sbjct: 3 KKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDMDG 62 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 +++ + + + VI++TA+ + V A + G + ++TKP+D D L A+ AL+ S Sbjct: 63 IEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALKNS 122 Query: 125 APATDER--------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 + + ++ S M + + ++++++V+VLI G++GTGKE+ A+A Sbjct: 123 ELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIARA 182 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 IH+ P PFI INC A+ LLESELFGH +GAFTGA + ++G F+ A GT+FLDE Sbjct: 183 IHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFLDE 242 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 +G++P LQ KLLR LQ++ + +G + + R+I AT++DL + + G FREDLYYR Sbjct: 243 MGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLYYR 302 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 L+ + +P L +R EDIP L +H++++ + A+ R+M WPGNVR+L Sbjct: 303 LSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVREL 362 Query: 357 VNVIEQCVALTSSPVISDALVEQALEG---ENTALPTFVEARNQFELNYLRKLLQITKGN 413 NV+ T + D + L ++ P + + E ++ K+L T GN Sbjct: 363 RNVLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAALSLREVEREHILKILHYTNGN 422 Query: 414 VTHAARMAGRNRTEFYKLLSRHELDAND 441 +T +A++ G +R + + ++++ Sbjct: 423 ITSSAQILGISRPTLRQKIRQYKILPQQ 450 >UniRef50_Q3JI73 C4-dicarboxylate transport transcriptional response regulator n=90 Tax=cellular organisms RepID=Q3JI73_BURP1 Length = 472 Score = 590 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 162/445 (36%), Positives = 232/445 (52%), Gaps = 20/445 (4%) Query: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 + +++DD + L EG V E L L R+ ++SD+R+ M G+ L Sbjct: 37 VYVIEDDAAVRLGCSQALALEGIGVREFEDAESALAALKRDPPAAIVSDVRLPGMGGLAL 96 Query: 68 FAEIQK--VQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 ++ +PVI++T HG + AV A + G + F+ KP D L + ALE Sbjct: 97 LDSMKAHPRDADIPVILMTGHGDVAMAVGAMRCGAYDFIEKPFHSDRLVDTVRRALEHRK 156 Query: 126 PATDERWREA-------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIH 178 + R A ++ +P M R+ + + VLI G++GTGKE+ A+A+H Sbjct: 157 LVIENRSLRAQLSGERPLLGSAPAMQRVHALIDAIGPTSADVLIIGETGTGKEVLARALH 216 Query: 179 NASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIG 238 AS R + PF+A+NC ALPE + ESE+FGH GAFTGA R G F+ A GGTLFLDE+ Sbjct: 217 AAS-RRTGPFVALNCAALPEAVFESEIFGHEPGAFTGAQQRRIGKFEYASGGTLFLDELE 275 Query: 239 DMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLN 298 MP LQ KLLR LQER + LGSN + ++VR+I+A +DL + A G FR DLY+RLN Sbjct: 276 SMPLSLQAKLLRALQERSIERLGSNVSVAVDVRVIAAVKQDLKQLAADGLFRSDLYFRLN 335 Query: 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVN 358 V S+++P L RT+DIP L +H LR AA R + ++ + M R WPGNVR+L N Sbjct: 336 VASIELPPLRRRTDDIPELFSHFLRAAAVRFEKPEPVWTQEDMMRWQLYDWPGNVRELKN 395 Query: 359 VIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVTHAA 418 E+ +E L + E Y+ + L+ G V AA Sbjct: 396 TAERFCL----------GLEDGLPRSPAGFDSLASRMVSAERAYIEEALRNAGGQVAKAA 445 Query: 419 RMAGRNRTEFYKLLSRHELDANDFK 443 + G R Y ++RH +D F+ Sbjct: 446 ELLGLPRKTLYDKITRHGIDMTAFR 470 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 165/467 (35%), Positives = 255/467 (54%), Gaps = 27/467 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNRE-KVDLVISDLRM 59 MS +++L+VDD+ + L L+ +G+ V A++G E L +E VISDLRM Sbjct: 1 MSPDESNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRM 60 Query: 60 DEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDD 119 E DG L ++++ P VI++TA G++P AV A + G F+ KP + L + + Sbjct: 61 PEGDGWSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKLTA 120 Query: 120 ALEQSAPATD----ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + P E I+TR P ++ +L+ VA++ ++LI G+SGTGKE+ A+ Sbjct: 121 SAGRRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLAR 180 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 +H SPR +PF+A+NC ALPE LLESELFG+ +GAF+GA++ + G F+ A GTL LD Sbjct: 181 YVHERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLLD 240 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EIG+M LQ KLLRV+QER+V +G + +++RI++ T+R++ + + G+FREDLYY Sbjct: 241 EIGEMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLYY 300 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL V +++PAL +R DI LLANH + H V + +A++ L +AS+PGNVR+ Sbjct: 301 RLRVFPVRVPALRQRPADIVLLANHFREKFRLEH-MEVGELTAEAVECLRSASFPGNVRE 359 Query: 356 LVNVIEQCVALTSSPVISDALV-----------------EQALEGENTALPT----FVEA 394 L NVI Q L I + + ++ Sbjct: 360 LENVIIQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPGQS 419 Query: 395 RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDAND 441 + E +R L+ N T AA+M G + L+ + + D Sbjct: 420 VWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLNEYGMGLQD 466 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 174/451 (38%), Positives = 262/451 (58%), Gaps = 20/451 (4%) Query: 5 PAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDG 64 A +L+VDDDP ++L L + V A LR L D++++DLRM +DG Sbjct: 1 MARILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDG 59 Query: 65 MQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQS 124 ++L + +++ P + V ++T H SI AV AT++G +L+KP + D + ++ A+E+ Sbjct: 60 IELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERR 119 Query: 125 APATDERWREA----------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 R +E ++ P M L E AR A++D +VL+ G++G GKEI A Sbjct: 120 RLLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVA 179 Query: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 + +H SPR + F++INCGALPE LLESELFGH RGAFTGA++ R G F+AA+GGT+ L Sbjct: 180 RLVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILL 239 Query: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 DEIG QV+LLRVLQER V+ +G I ++VR+I+AT+ DL +A G FR+DLY Sbjct: 240 DEIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLY 299 Query: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 YRL VV+L +P L ER ED+ LA H LR+ P VR S + + +L+ +PGNVR Sbjct: 300 YRLGVVTLVVPPLRERREDVGPLAEHFLRKY-RHVNPAVRGVSPEGLAKLVAYDYPGNVR 358 Query: 355 QLVNVIEQCVALTSSPVISD--------ALVEQALEGENTALPTFVEARNQFELNYLRKL 406 +L NV+E+ + L + +S A + + A A + E ++R++ Sbjct: 359 ELENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAIDDAEREHIRRV 418 Query: 407 LQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 L+ G AAR+ G +++ ++ L R+ L Sbjct: 419 LERCGGRRGEAARLLGIDKSTLWRKLKRYGL 449 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 242/469 (51%), Gaps = 36/469 (7%) Query: 3 HKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEM 62 +L VDD+P + KLL L++ +V A S + L R ++V+ D+R+ + Sbjct: 2 RTSYSVLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDA 61 Query: 63 DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALE 122 DG++ E+++ P M VI++T HG+I +AV A + G + ++TKP + L ++ A + Sbjct: 62 DGIEFMVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQ 121 Query: 123 QSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 ++ + R ++ S ++ + VA +DV VLI G+SG GKE+ Sbjct: 122 RAFLRNENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEV 181 Query: 173 FAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 A AI + R KPFI NC L ++L SELFGH RG+FTGA+ +R+GL A GTL Sbjct: 182 AAHAIQSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTL 241 Query: 233 FLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRED 292 FLDEIG++P +Q LLRVL+ + R +G ++R+I AT+R L + G F E Sbjct: 242 FLDEIGELPMEVQASLLRVLENKTYRRVGEKDHRSCDLRLIFATNRTLAGEVEAGRFHEA 301 Query: 293 LYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 LY+R+NV ++++P L ER EDIPLLA L + + S AM LM +WPGN Sbjct: 302 LYHRINVFNIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDKAMSCLMQYAWPGN 359 Query: 353 VRQLVNVIEQCVALTSSPVISDALVEQALEG------------------------ENTAL 388 VR+L NV+E+ + L + +I++ + + L G Sbjct: 360 VRELRNVLERSIILAENNLITEHALPRDLAGFAGGSVGQSGVTGASGVCGTPGAPGAMGE 419 Query: 389 PTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 + E ++ ++L+ N + AA G +R Y+ + +++ Sbjct: 420 MQGPLSLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMREYDI 468 >UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4KCC3_THASP Length = 501 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 158/443 (35%), Positives = 240/443 (54%), Gaps = 15/443 (3%) Query: 7 HLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQ 66 +L+VDD+ G+ L L V +A ++ R DL++ D+ + G++ Sbjct: 52 SVLVVDDEEGMRNFLERTLARRCGMVQSAADAEHAAVLMARLHFDLLVLDIALPGKSGIE 111 Query: 67 LFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAP 126 E+++ VI++TA + A+ A + G F+ KP D + +I E++ Sbjct: 112 WLHELRENGYAGDVILITAFADMETAIDALRGGASDFILKPFRVDQILNSIKRCFERAGL 171 Query: 127 ATDERWRE-----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 A + ++ SP M +L R V Q +VL+ G+SGTGKE+ A+ Sbjct: 172 ARENFVLRRELAGLGAEPTGLIGHSPAMEQLRALVRRVGQMPSTVLLLGESGTGKEVVAR 231 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 A+H SPR +PF+ +NC A+ +L+ESELFGH +GAFTGA NR GLF A GGTLFLD Sbjct: 232 ALHQTSPRAQRPFVPLNCAAIASELIESELFGHVKGAFTGATENRNGLFYYAHGGTLFLD 291 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 EI ++P +Q +LLRVL+ERK+RP+GS R++ ++VRII+A++RDL + G FREDLYY Sbjct: 292 EISELPLAMQTRLLRVLEERKLRPVGSERELPVDVRIIAASNRDLAAEVRAGRFREDLYY 351 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RL VV + +P L +RTEDIP L H ++Q + + S + + RL +WPGNVR+ Sbjct: 352 RLAVVDIGLPPLRDRTEDIPELMRHFMQQFSVQLGVPPLPLSHEVVNRLAGYTWPGNVRE 411 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITKGNVT 415 L N IE+ + L A A T + + E ++ ++ +GN T Sbjct: 412 LRNYIERSLILGH----FPAQPSAAPTAAPTPAGELESSLAEVERRHIERVTAACEGNKT 467 Query: 416 HAARMAGRNRTEFYKLLSRHELD 438 AAR G +R + + L+ Sbjct: 468 EAARRLGVSRKTLERKFAEWALE 490 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 163/460 (35%), Positives = 261/460 (56%), Gaps = 26/460 (5%) Query: 6 AHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGM 65 + +L+VDD+P + + L+ +GY V SG EGL+ L DLV+ D++ ++G+ Sbjct: 4 SRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHINGI 63 Query: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSA 125 + E++K +P + VII+T +G++ +AV A + G F F+TKP ++ L ++ ALE Sbjct: 64 DILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALESIK 123 Query: 126 PATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 + + I+ + + ++ E+ V+ D +VL++G+SGTGKE+FA+ Sbjct: 124 LVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAK 183 Query: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 AIH S R S F+A++C ++ESELFGH +GAFTGA + EG+F AA GTLFLD Sbjct: 184 AIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLD 243 Query: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 E+G++ +Q KLLRVL+ + +P+GSN+ R+++AT+++L + + G FREDL+Y Sbjct: 244 EVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFY 303 Query: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 RLNV +KIP L ER +D+P +A H LR + + FS DA+ L+ WPGNVRQ Sbjct: 304 RLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGNVRQ 363 Query: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTAL-PTFVEARNQ---------------FE 399 L NV+E+ V + + + LE + AL + E Sbjct: 364 LKNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPLTLEELKRARKDFLEDSFRPVE 423 Query: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDA 439 +L + L KGN+T AA+ G R+ F ++ ++++ A Sbjct: 424 RLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKKNDIHA 463 >UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=17 Tax=Acinetobacter RepID=B0VDC3_ACIBY Length = 473 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 257/472 (54%), Gaps = 28/472 (5%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M+ + +LLVDD+ L L+ + L G A + ++ + D ++DL + Sbjct: 1 MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLP 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 + G+ L + + P+ +LTA+G++ A+AA + G F F++KPV++ L Q + A Sbjct: 61 DGSGIDLVKHVSQNYTNTPIAVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKA 120 Query: 121 LEQSAPATDERWR----EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176 L + D + ++ RS + +L + +A+S V + G+SGTGKE+ A Sbjct: 121 LNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARSQAPVFVTGESGTGKEVVANL 180 Query: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 +H S R+ PFIAINCGA+P +L+ESELFGH +G+FTGA +++GL +A GG+LFLDE Sbjct: 181 VHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE 240 Query: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296 I ++P +QVKLLR +QE+K+RP+GS+++ID++ R+ISA+H+DL + +G+FR+DL++R Sbjct: 241 IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFR 300 Query: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356 ++V+ L +P L ER ED+ LLANH +++ + + + A L+ +PGNVR+L Sbjct: 301 IHVMDLILPPLRERGEDVLLLANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVREL 360 Query: 357 VNVIEQCVALTSSPVISDALVEQALEGENTALP------------------------TFV 392 N+IE+ + L+ I + + A N + P Sbjct: 361 RNMIERAITLSEDATIDISHLHPAPLRANISNPFVSATQNIQTTVAAPQVVKKLPSEGLE 420 Query: 393 EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE 444 E + L L +T N T AA+ G L + LD +E Sbjct: 421 RYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQE 472 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 170/442 (38%), Positives = 250/442 (56%), Gaps = 12/442 (2%) Query: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 M A +LLV+DD ++L L G V A G E L L + DL++SD +M Sbjct: 1 MGAAGARVLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQ 60 Query: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 MDG L A ++ PV+++TA G+I +AV A Q G +L KP L + Sbjct: 61 PMDGYGLLAALRAQPGHPPVVMMTAWGTIDEAVRALQNGAVDYLVKPFAMQELLTKLQRH 120 Query: 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNA 180 E+ P + SP+ML L +AR VAQ++ SVL+ G+SG GKE+ A+ IH Sbjct: 121 -ERLQPGAELEPL----AHSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHRE 175 Query: 181 SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 240 S R +PF+A+NC A+PE LLE+ LFGH +GAFTGA + G F+ A+GGTL LDE+ +M Sbjct: 176 SNRAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTEM 235 Query: 241 PAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 PLQ KLLRVLQER++ +G R I ++VR+I+ ++RDL +A++ G+FREDLYYRL V+ Sbjct: 236 ALPLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQVI 295 Query: 301 SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVI 360 L +P L +R EDI LA LL + ER ++ +A L++ WPGNVR+L N + Sbjct: 296 PLCVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSYPWPGNVRELDNAL 355 Query: 361 EQCVALTSSPVISDALVEQALEG-------ENTALPTFVEARNQFELNYLRKLLQITKGN 413 ++ ++ VI + + G E ++ P + R++ E + +L+ +G+ Sbjct: 356 QRAAIFSADTVIRSDDLGLEIRGTLDDARSEGSSRPILEDVRSRQEQETIVSVLRECRGS 415 Query: 414 VTHAARMAGRNRTEFYKLLSRH 435 AAR G + L R+ Sbjct: 416 RNEAARRLGISPRTLRHKLQRY 437 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 159/487 (32%), Positives = 255/487 (52%), Gaps = 46/487 (9%) Query: 4 KPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL--NREKVDLVISDLRMDE 61 +L+VDDDP +L+ + +G+ ESG L + + +V+ DL M Sbjct: 6 MAKTVLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMPG 65 Query: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 + GM+ + + +P +PVI+LTA G I V A + G F KP + + ++ +AL Sbjct: 66 LSGMETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNAL 125 Query: 122 EQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 171 + S + + + ++ +PLM +++ + A+S++ +LI G+SG GKE Sbjct: 126 KVSDLRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGKE 185 Query: 172 IFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 + +Q I +AS R KPFI +NCGA+PE L+ES LFGH +GAFTGA + G F A+GGT Sbjct: 186 VASQCIQSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGGT 245 Query: 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFRE 291 LFLDE+G++P +QVKLLRVLQE +V +GS + ++VRIISAT+RDL +A++ G FRE Sbjct: 246 LFLDEVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFRE 305 Query: 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 DLYYRLNV +++P+L +R ED+P L +H +R+ + + S + M + WPG Sbjct: 306 DLYYRLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWPG 365 Query: 352 NVRQLVNVIEQCVALTSSPVISDALVEQ--------ALEGENTALPTFVEA--------- 394 NVRQL N I + + L+ + + + +A Sbjct: 366 NVRQLENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLNS 425 Query: 395 -----------------RNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHEL 437 E + ++ + + G+++ AR G R+ Y+ + ++L Sbjct: 426 PLGGPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTLYRKVREYDL 485 Query: 438 DANDFKE 444 D +E Sbjct: 486 RVRDDEE 492 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 168/458 (36%), Positives = 262/458 (57%), Gaps = 28/458 (6%) Query: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 +LVDD+P +L+LL + L S + A + A+ +L + + DL ++D+++ + +GM L Sbjct: 1 MLVDDEPDILRLLEITLARMNLSTLRATNLADAYELLRQHEPDLCLTDMKLPDGNGMSLI 60 Query: 69 AEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPAT 128 IQ P +PV ++TAHGS+ A+ A + G F F++KP+ + L ++ AL+ Sbjct: 61 EHIQTHYPTIPVAMITAHGSVEAAIDALKLGAFDFVSKPIALEKLRDIVNHALQVKDAGD 120 Query: 129 DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPF 188 D + +V +P M RL Q + VA+S V I+G+SG GKE+ A+ IH SPR +PF Sbjct: 121 DAASDQLLVGDTPAMERLRLQIQKVARSQAPVHIHGESGVGKEVVARLIHQLSPRAEQPF 180 Query: 189 IAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKL 248 IA+NCGA+P L+ESELFGH +G+FTGA +++ GLFQAA GGTL LDE+ D+P +QVKL Sbjct: 181 IAVNCGAIPADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPLNVQVKL 240 Query: 249 LRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALA 308 LRV+QE+ VRP+G+ +++ +VR++SATH+DL A+ G FR+DL+YR+NV+++ +P+L Sbjct: 241 LRVIQEKAVRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAIDVPSLR 300 Query: 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTS 368 +R EDIPLLA HLL++ A + T A+ +L +PGNVR+L N++ + AL Sbjct: 301 KRREDIPLLATHLLQRIAMDNGSDAINIDTAALTKLCDYDFPGNVRELENILARAHALAD 360 Query: 369 SPVISDALV------------------------EQALEGENTALPTFVEARNQF----EL 400 ++ + + L F E Sbjct: 361 GGELTIDDIQFQTMGASEITEHHAKSDESYPEEPPHVPSGRIDLSDVNGDLESFLNTIER 420 Query: 401 NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 438 L + + + N T AA+ G + L + L+ Sbjct: 421 EVLDQAMLKHRWNKTAAAKALGISFRSLRYRLKKLGLE 458 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.211 0.810 Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,303,778,116 Number of Sequences: 3077464 Number of extensions: 307226249 Number of successful extensions: 892866 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 42074 Number of HSP's successfully gapped in prelim test: 13650 Number of HSP's that attempted gapping in prelim test: 764812 Number of HSP's gapped (non-prelim): 70240 length of query: 444 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 312 effective length of database: 634,171,108 effective search space: 197861385696 effective search space used: 197861385696 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 96 (40.9 bits)