13 c3mcqA_ Probab=100.00  E-value=1.9e-39  Score=262.51  Aligned_columns=288  Identities=15%

Q ss_pred             HHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE----ECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             888530047883799302665551123444423466656545555534799975----0377887538898832153720
Q batch____       240 MIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHETGRYDFHQEPAHILMKV----ETHNHPTAISPWPGAATGSGGE  315 (1295)
Q Consensus       240 ~i~~t~~~~~~~~~~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~v~fK~----ETHNHPSaIePf~GAaTGvGGi  315 (1295)
                      +|++.+....++++.+++||++|++                  .++++.++++.    |+||||+.++||.++.+.+.+.
T Consensus         1 li~~~~~~~~~~~~~g~GdDaAvi~------------------~~~~~~lv~s~D~~~~~~~~~~~~~p~~~G~~av~~~   62 (302)
T c3mcqA_           1 LIQRYFRRAHPSAVLGVGDDAALIQ------------------PSPGXELAVSADXLVANTHFYPNIDPWLIGWKSLAVN   62 (302)
T ss_dssp             CCCCSCCCCEECTTTCCCGGGGCCC------------------CCTTCEEEEEEEEEECCTTSCCCSCHHHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCEEECCCCCEEEEE------------------CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9355235678880874665458997------------------3899489999422226655555689899999999875


Q ss_pred             EECCEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCEECCCEEEECCCC
Q ss_conf             10301038876122310024412676765447433333444343458787664305202138200440217524430344
Q batch____       316 IRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTYEEK  395 (1295)
Q Consensus       316 iRDi~~~G~gArPiA~~~~~~fg~l~~~~~~~p~e~~~~~~~~~~~~~~i~~~~~~Gis~YGN~~GvPtv~G~~~~f~~~  395 (1295)
                      +||+.+||  |+|++.++++.+.+..                     ...+.+.+.|++++.+++|+|.++|.+ .++. 
T Consensus        63 ~sDi~a~G--a~P~~~~~~l~~p~~~---------------------~~~l~~i~~Gi~~~~~~~g~pvvGG~t-~~~~-  117 (302)
T c3mcqA_          63 ISDXAAXG--AQPRWATLTIALPEAD---------------------EDWISKFAAGFFACAAQFDIALIGGDT-TRGP-  117 (302)
T ss_dssp             HHHHHHTT--CEEEEEEEEEEESSCC---------------------HHHHHHHHHHHHHHHHHTTCEEEEEEE-EESS-
T ss_pred             CCCCCCCC--CEEEEEEEEEECCCCC---------------------HHHHHHHHHHHHHHHHHHCCEEEEEEE-EEEC-
T ss_conf             01201038--5776666641168999---------------------899999999999999980985996413-5504-


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEECHHH-HCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCC
Q ss_conf             46666532113447448987874107878-02344689878999706645447550236677524540210356544588
Q batch____       396 VNSHNGEELRGYHKPIMLAGGIGNIRADH-VQKGEINVGAKLVVLGGPAMNIGLGGGAASSMASGQSDADLDFASVQRDN  474 (1295)
Q Consensus       396 ~~~~~~~~~~~y~kplv~~~~vG~~~~~~-~~~~~~~~Gd~vv~iGg~TgRDGigGat~SS~~~~~~s~~~~~~aVQ~Gd  474 (1295)
                                    +.+-+.++|.+++++ +.+..+++||.|++    ||+.|.+++..++.........   ..++..+
T Consensus       118 --------------~~~~~t~~G~~~~~~~~~~~~~~~GD~ivl----~g~~G~~~~g~~~~~~~~~~~~---~~~~~~~  176 (302)
T c3mcqA_         118 --------------LTISVQIXGETPPGASLLRSTARADDDIWV----SGPLGDAALALAAIQGRYPLSD---TELAACG  176 (302)
T ss_dssp             --------------CEEEEEEEEEECTTCCCCSSCCCTTEEEEE----CSCCSHHHHHHHHHTTSSCCCH---HHHHHHH
T ss_pred             --------------EEEEEEEEEEECCCCCCCCCCCCCCCEEEE----ECCCCHHHHHHHHHHCCCCCCC---CCHHHHH
T ss_conf             --------------035556646652352356555678978999----8267602788999740056763---2047789


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEHHCCCCC------CCCCHHHHHHHHHC
Q ss_conf             378789999999999732049578995358653000134420133782699831236778------98878997763101
Q batch____       475 PEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELREILSDE------PGMSPLEIWCNESQ  548 (1295)
Q Consensus       475 P~~ekkl~~vi~~~le~~~~~~i~~i~D~GAgGls~a~~Ela~~~g~G~~i~Ld~vp~r~------~gm~p~Ei~~SESQ  548 (1295)
                      +.+.|..   .+....+...+++.+++|.- ||+..++.||+..+++|++|+++++|...      +.+..++++++.++
T Consensus       177 ~~~~~~~---~~~~~~~~~~~~~~a~~Dis-gGl~~~l~ela~~sg~g~~i~~~~ipv~~~~~~~~~~~~~~~~~l~~~~  252 (302)
T c3mcqA_         177 KALHQPQ---PRVVLGQALRGLAHSALDIS-DGLLADLGHILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKXILSGGD  252 (302)
T ss_dssp             HHHHCCC---CCHHHHHHTTTTEEEEEECS-SCHHHHHHHHHHHHTCEEEEEGGGSCCCHHHHHTTTSHHHHHHHHHCSC
T ss_pred             HHHHHHH---HHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHHCCCEEEEEHHHCCCCHHHHHHHHHCCCCHHHHCCCC
T ss_conf             9976137---99999998649980985247-7226678988751595399981556989889988762686724542888


Q ss_pred             C-CEEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEECCCCC
Q ss_conf             3-3699986211798999999709978999998169849999888642
Q batch____       549 E-RYVLAVAADQLPLFDELCKRERAPYAVIGEATEELHLSLHDRHFDN  595 (1295)
Q Consensus       549 E-RM~l~v~~~~~~~~~~i~~~~~~~~~vIG~vt~~~~~~~~~~~~~~  595 (1295)
                      + +|+++|+|++.++|.++++++++++++||+||+++++.+...+..+
T Consensus       253 ~~~li~~v~pe~~~~v~~~~~~~g~~~~~IG~Vt~~~~~~l~~~d~~~  300 (302)
T c3mcqA_         253 DYELCFTASTQHRQQIADIGRQLSLDXAVIGRITDTQQLVIHGLDDAP  300 (302)
T ss_dssp             CCCEEEEEEGGGHHHHHHHHHHTTCCCEEEEEEESSCCEEEECTTCCE
T ss_pred             CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEECCCCCC
T ss_conf             537999963787999999999759981799999916908997389972