08/01/2012 01:50:20 : INFO  : Run start: Sun Jan  8 01:50:20 GMT 2012
08/01/2012 01:50:22 : INFO  : Initialised job
08/01/2012 01:50:23 : INFO  : Renaming log file 'phyre2_20120108_015019.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/phyre_20120108_015019.log'
08/01/2012 01:50:24 : INFO  : Initialised job:
Sequence
>batch____
MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTV
VQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLT
PKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDI
YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAE
HPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLSEALE
SFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTP
IDDVMRVLDIDEFPQSGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQL
LVTRIDSKATALSPKLPDAKDKEESVA

08/01/2012 01:50:24 : INFO  : Checked sequence
08/01/2012 01:50:25 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 01:50:26 : INFO  : PSI-BLAST 3 iterations
08/01/2012 01:53:13 : INFO  : PSI-BLAST 5 iterations
08/01/2012 01:56:44 : INFO  : Finished PSI-BLAST
08/01/2012 01:56:45 : INFO  : Running Buildali to generate a3m file
08/01/2012 02:17:11 : INFO  : Converting to HMM
08/01/2012 02:17:17 : INFO  : Calibrating HMM
08/01/2012 02:17:35 : INFO  : Searching HMM database
08/01/2012 02:28:25 : INFO  : Finished buildali
08/01/2012 02:28:25 : INFO  : Predicting secondary structure
08/01/2012 02:28:29 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 02:28:30 : INFO  : Predicting Disordered regions
08/01/2012 02:28:32 : INFO  : Predicted Disorder (Disopred)
08/01/2012 02:28:33 : INFO  : Running memsat_svm check
08/01/2012 02:31:59 : INFO  : Running memsat_svm full
08/01/2012 02:39:39 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c1130e0b8683870b'
08/01/2012 02:39:41 : INFO  : Initialising fold library search
08/01/2012 02:39:43 : INFO  : Initialised search input
08/01/2012 02:39:45 : INFO  : Building Ensemble models
08/01/2012 02:39:47 : INFO  : Building hh.c3ocmA_.model.1.pdb
08/01/2012 02:39:59 : INFO  : Building hh.c3ocmB_.model.2.pdb
08/01/2012 02:40:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3ocmB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3ocmB_.2.pdb
08/01/2012 02:40:10 : INFO  : Building hh.c3oi8B_.model.3.pdb
08/01/2012 02:40:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3oi8B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3oi8B_.3.pdb
08/01/2012 02:40:22 : INFO  : Building hh.c3ocoB_.model.4.pdb
08/01/2012 02:40:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3ocoB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3ocoB_.4.pdb
08/01/2012 02:40:34 : INFO  : Building hh.c3lhhA_.model.5.pdb
08/01/2012 02:40:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3lhhA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3lhhA_.5.pdb
08/01/2012 02:40:46 : INFO  : Building hh.c3lv9A_.model.6.pdb
08/01/2012 02:40:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3lv9A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3lv9A_.6.pdb
08/01/2012 02:40:59 : INFO  : Building hh.c3dedB_.model.7.pdb
08/01/2012 02:41:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3dedB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3dedB_.13.pdb
08/01/2012 02:41:11 : INFO  : Building hh.d3deda1.model.8.pdb
08/01/2012 02:41:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.d3deda1.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/d3deda1.14.pdb
08/01/2012 02:41:23 : INFO  : Building hh.d2plsa1.model.9.pdb
08/01/2012 02:41:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.d2plsa1.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/d2plsa1.16.pdb
08/01/2012 02:41:35 : INFO  : Building hh.d2plia1.model.10.pdb
08/01/2012 02:41:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.d2plia1.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/d2plia1.17.pdb
08/01/2012 02:41:47 : INFO  : Building hh.c3orgB_.model.11.pdb
08/01/2012 02:41:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.c3orgB_.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/c3orgB_.30.pdb
08/01/2012 02:41:59 : INFO  : Building hh.d2oaia1.model.12.pdb
08/01/2012 02:42:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.d2oaia1.model.12.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/d2oaia1.38.pdb
08/01/2012 02:42:11 : INFO  : Building hh.d2p4pa1.model.13.pdb
08/01/2012 02:42:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/hh.d2p4pa1.model.13.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c1130e0b8683870b/d2p4pa1.61.pdb
08/01/2012 02:42:22 : INFO  : Building c3ocmA_.1.pdb
08/01/2012 02:42:34 : INFO  : Building c3ocmB_.2.pdb
08/01/2012 02:42:44 : INFO  : Building c3oi8B_.3.pdb
08/01/2012 02:42:54 : INFO  : Building c3ocoB_.4.pdb
08/01/2012 02:43:04 : INFO  : Building c3lhhA_.5.pdb
08/01/2012 02:43:14 : INFO  : Building c3lv9A_.6.pdb
08/01/2012 02:43:25 : INFO  : Building c3hf7A_.7.pdb
08/01/2012 02:43:38 : INFO  : Building c3jtfB_.8.pdb
08/01/2012 02:43:48 : INFO  : Building c3i8nB_.9.pdb
08/01/2012 02:43:58 : INFO  : Building c3lfrB_.10.pdb
08/01/2012 02:44:10 : INFO  : Building c3nqrD_.11.pdb
08/01/2012 02:44:19 : INFO  : Building c3kxrA_.12.pdb
08/01/2012 02:44:29 : INFO  : Building c3dedB_.13.pdb
08/01/2012 02:44:39 : INFO  : Building d3deda1.14.pdb
08/01/2012 02:44:49 : INFO  : Building c1yavB_.15.pdb
08/01/2012 02:44:59 : INFO  : Building d2plsa1.16.pdb
08/01/2012 02:45:09 : INFO  : Building d2plia1.17.pdb
08/01/2012 02:45:19 : INFO  : Building c3ctuB_.18.pdb
08/01/2012 02:45:30 : INFO  : Building c2yvxD_.19.pdb
08/01/2012 02:45:40 : INFO  : Building d2ooxe1.20.pdb
08/01/2012 02:48:06 : INFO  : Finished HH model building
08/01/2012 02:48:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 02:49:22 : INFO  : html domain output complete ID 'c1130e0b8683870b'
08/01/2012 03:13:58 : INFO  : Run end  : Sun Jan  8 03:13:57 GMT 2012
