Phyre 2 Results for P0AE45

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Email | l.a.kelley@imperial.ac.uk
Description | P0AE45
Date | Thu Jan 5 11:22:30 GMT 2012
Unique Job ID | c1130e0b8683870b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ocmA_
Top template information
PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
Confidence and coverage
Confidence: | 100.0% | Coverage: | 33%
149 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
349 residues ( 78%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | N | S | I | L | V | I | L | C | L | I | A | V | S | A | F | F | S | M | S | E | I | S | L | A | A | S | R | K | I | K | L | K | L | L | A | D | E | G | N | I | N | A | Q | R | V | L | N | M | Q | E | N | P | G | M | F | F | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | Q | I | G | L | N | A | V | A | I | L | G | G | I | V | G | D | A | A | F | S | P | A | F | H | S | L | F | S | R | Y | M | S | A | E | L | S | E | Q | L | S | F | I | L | S | F | S | L | V | T | G | M | F | I | L | F | A | D | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | P | K | R | I | G | M | I | A | P | E | A | V | A | L | R | I | I | N | P | M | R | F | C | L | Y | V | C | T | P | L | V | W | F | F | N | G | L | A | N | I | I | F | R | I | F | K | L | P | M | V | R | K | D | D | I | T | S | D | D | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Y | A | V | V | E | A | G | A | L | A | G | V | L | R | K | Q | E | H | E | L | I | E | N | V | F | E | L | E | S | R | T | V | P | S | S | M | T | P | R | E | N | V | I | W | F | D | L | H | E | D | E | Q | S | L | K | N | K | V | A | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | H | P | H | S | K | F | L | V | C | N | E | D | I | D | H | I | I | G | Y | V | D | S | K | D | L | L | N | R | V | L | A | N | Q | S | L | A | L | N | S | G | V | Q | I | R | N | T | L | I | V | P | D | T | L | T | L | S | E | A | L | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | F | K | T | A | G | E | D | F | A | V | I | M | N | E | Y | A | L | V | V | G | I | I | T | L | N | D | V | M | T | T | L | M | G | D | L | V | G | Q | G | L | E | E | Q | I | V | A | R | D | E | N | S | W | L | I | D | G | G | T | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | I | D | D | V | M | R | V | L | D | I | D | E | F | P | Q | S | G | N | Y | E | T | I | G | G | F | M | M | F | M | L | R | K | I | P | K | R | T | D | S | V | K | F | A | G | Y | K | F | E | V | V | D | I | D | N | Y | R | I | D | Q | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | .
Sequence |  | L | V | T | R | I | D | S | K | A | T | A | L | S | P | K | L | P | D | A | K | D | K | E | E | S | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ocmA_ |

### PDB 3ocm chain A

Region: 192 - 343
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis

Phyre2
2 |
| c3ocmB_ |

### PDB 3ocm chain B

Region: 193 - 341
Aligned: 146
Modelled: 146
Confidence: 100.0%
Identity: 22%
PDB header:membrane protein
Chain: B: PDB Molecule:putative membrane protein;
PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis

Phyre2
3 |
| c3oi8B_ |

### PDB 3oi8 chain B

Region: 175 - 329
Aligned: 153
Modelled: 155
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of functionally unknown conserved protein domain2 from neisseria meningitidis mc58

Phyre2
4 |
| c3ocoB_ |

### PDB 3oco chain B

Region: 199 - 334
Aligned: 134
Modelled: 133
Confidence: 99.9%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains;
PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu

Phyre2
5 |
| c3lhhA_ |

### PDB 3lhh chain A

Region: 211 - 337
Aligned: 125
Modelled: 127
Confidence: 99.9%
Identity: 30%
PDB header:membrane protein
Chain: A: PDB Molecule:cbs domain protein;
PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.

Phyre2
6 |
| c3lv9A_ |

### PDB 3lv9 chain A

Region: 205 - 336
Aligned: 130
Modelled: 132
Confidence: 99.9%
Identity: 22%
PDB header:membrane protein
Chain: A: PDB Molecule:putative transporter;
PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630

Phyre2
7 |
| c3hf7A_ |

### PDB 3hf7 chain A

Region: 209 - 334
Aligned: 126
Modelled: 126
Confidence: 99.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized cbs-domain protein;
PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a

Phyre2
8 |
| c3jtfB_ |

### PDB 3jtf chain B

Region: 209 - 336
Aligned: 125
Modelled: 128
Confidence: 99.9%
Identity: 30%
PDB header:transport protein
Chain: B: PDB Molecule:magnesium and cobalt efflux protein;
PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp

Phyre2
9 |
| c3i8nB_ |

### PDB 3i8n chain B

Region: 208 - 333
Aligned: 125
Modelled: 126
Confidence: 99.9%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp2912;
PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633.

Phyre2
10 |
| c3lfrB_ |

### PDB 3lfr chain B

Region: 208 - 337
Aligned: 128
Modelled: 130
Confidence: 99.9%
Identity: 25%
PDB header:transport protein
Chain: B: PDB Molecule:putative metal ion transporter;
PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a

Phyre2
11 |
| c3nqrD_ |

### PDB 3nqr chain D

Region: 210 - 333
Aligned: 123
Modelled: 124
Confidence: 99.9%
Identity: 24%
PDB header:transport protein
Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc;
PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2

Phyre2
12 |
| c3kxrA_ |

### PDB 3kxr chain A

Region: 173 - 332
Aligned: 153
Modelled: 160
Confidence: 99.9%
Identity: 10%
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transporter, putative;
PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.

Phyre2
13 |
| c3dedB_ |

### PDB 3ded chain B

Region: 343 - 424
Aligned: 81
Modelled: 82
Confidence: 99.8%
Identity: 40%
PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum

Phyre2
14 |
| d3deda1 |

### PDB 3ded chain A domain 1

Region: 343 - 426
Aligned: 83
Modelled: 84
Confidence: 99.8%
Identity: 39%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
15 |
| c1yavB_ |

### PDB 1yav chain B

Region: 209 - 338
Aligned: 127
Modelled: 130
Confidence: 99.8%
Identity: 12%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14130;
PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis

Phyre2
16 |
| d2plsa1 |

### PDB 2pls chain A domain 1

Region: 346 - 426
Aligned: 81
Modelled: 81
Confidence: 99.8%
Identity: 33%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
17 |
| d2plia1 |

### PDB 2pli chain A domain 1

Region: 343 - 426
Aligned: 82
Modelled: 84
Confidence: 99.8%
Identity: 30%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
18 |
| c3ctuB_ |

### PDB 3ctu chain B

Region: 200 - 341
Aligned: 139
Modelled: 142
Confidence: 99.8%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cbs domain protein;
PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4

Phyre2
19 |
| c2yvxD_ |

### PDB 2yvx chain D

Region: 173 - 335
Aligned: 157
Modelled: 163
Confidence: 99.8%
Identity: 15%
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte

Phyre2
20 |
| d2ooxe1 |

### PDB 2oox chain E domain 1

Region: 192 - 338
Aligned: 147
Modelled: 147
Confidence: 99.8%
Identity: 12%
Fold: CBS-domain pair
Superfamily: CBS-domain pair
Family: CBS-domain pair

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
| c3orgB_ |

### PDB 3org chain B

Region: 69 - 332
Aligned: 218
Modelled: 218
Confidence: 99.8%
Identity: 14%
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter

Phyre2
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
| d2oaia1 |

### PDB 2oai chain A domain 1

Region: 341 - 424
Aligned: 78
Modelled: 76
Confidence: 99.8%
Identity: 36%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
| d2p4pa1 |

### PDB 2p4p chain A domain 1

Region: 347 - 426
Aligned: 75
Modelled: 69
Confidence: 99.7%
Identity: 52%
Fold: FAD-binding/transporter-associated domain-like
Superfamily: FAD-binding/transporter-associated domain-like
Family: CorC/HlyC domain-like

Phyre2
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ocmA_ |
|  | 100.0 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
2 | c3ocmB_ |
|  | 100.0 | 22 | PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis
3 | c3oi8B_ |
|  | 100.0 | 20 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of functionally unknown conserved protein domain2 from neisseria meningitidis mc58
4 | c3ocoB_ |
|  | 99.9 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains; PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu
5 | c3lhhA_ |
|  | 99.9 | 30 | PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.
6 | c3lv9A_ |
|  | 99.9 | 22 | PDB header:membrane protein Chain: A: PDB Molecule:putative transporter; PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630
7 | c3hf7A_ |
|  | 99.9 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cbs-domain protein; PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a
8 | c3jtfB_ |
|  | 99.9 | 30 | PDB header:transport protein Chain: B: PDB Molecule:magnesium and cobalt efflux protein; PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp
9 | c3i8nB_ |
|  | 99.9 | 26 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp2912; PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633.
10 | c3lfrB_ |
|  | 99.9 | 25 | PDB header:transport protein Chain: B: PDB Molecule:putative metal ion transporter; PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a
11 | c3nqrD_ |
|  | 99.9 | 24 | PDB header:transport protein Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc; PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2
12 | c3kxrA_ |
|  | 99.9 | 10 | PDB header:transport protein Chain: A: PDB Molecule:magnesium transporter, putative; PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.
13 | c3dedB_ |
|  | 99.8 | 40 | PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
14 | d3deda1 |
|  | 99.8 | 39 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
15 | c1yavB_ |
|  | 99.8 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14130; PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis
16 | d2plsa1 |
|  | 99.8 | 33 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
17 | d2plia1 |
|  | 99.8 | 30 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
18 | c3ctuB_ |
|  | 99.8 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4
19 | c2yvxD_ |
|  | 99.8 | 15 | PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte
20 | d2ooxe1 |
|  | 99.8 | 12 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
21 | d2nqwa1 |
| not modelled | 99.8 | 21 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
22 | d2p13a1 |
| not modelled | 99.8 | 24 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
23 | c3llbA_ |
| not modelled | 99.8 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
24 | d2o3ga1 |
| not modelled | 99.8 | 24 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
25 | d2r2za1 |
| not modelled | 99.8 | 23 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
26 | d2o1ra1 |
| not modelled | 99.8 | 18 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
27 | c3lqnA_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor
28 | c2yvzA_ |
| not modelled | 99.8 | 13 | PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form
29 | c2emqA_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: hypothetical conserved protein (gk1048) from geobacillus kaustophilus
30 | c3orgB_ |
|  | 99.8 | 14 | PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter
31 | d2nyca1 |
| not modelled | 99.8 | 13 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
32 | c1zfjA_ |
| not modelled | 99.8 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
33 | c2ouxB_ |
| not modelled | 99.8 | 15 | PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter
34 | d2d4za3 |
| not modelled | 99.8 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
35 | d1yava3 |
| not modelled | 99.8 | 12 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
36 | c2qh1B_ |
| not modelled | 99.8 | 15 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ta0289; PDBTitle: structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound2 state
37 | c2d4zB_ |
| not modelled | 99.8 | 16 | PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0
38 | d2oaia1 |
|  | 99.8 | 36 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
39 | d2p3ha1 |
| not modelled | 99.8 | 29 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
40 | d2v8qe2 |
| not modelled | 99.7 | 11 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
41 | d3ddja1 |
| not modelled | 99.7 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
42 | d2rk5a1 |
| not modelled | 99.7 | 20 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
43 | c3fnaA_ |
| not modelled | 99.7 | 12 | PDB header:isomerase Chain: A: PDB Molecule:possible arabinose 5-phosphate isomerase; PDBTitle: crystal structure of the cbs pair of possible d-arabinose 5-phosphate2 isomerase yrbh from escherichia coli cft073
44 | d2j9la1 |
| not modelled | 99.7 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
45 | c3fwrB_ |
| not modelled | 99.7 | 13 | PDB header:transcription Chain: B: PDB Molecule:yqzb protein; PDBTitle: crystal structure of the cbs domains from the bacillus subtilis ccpn2 repressor complexed with adp
46 | c3pc3A_ |
| not modelled | 99.7 | 11 | PDB header:lyase Chain: A: PDB Molecule:cg1753, isoform a; PDBTitle: full length structure of cystathionine beta-synthase from drosophila2 in complex with aminoacrylate
47 | d1vr9a3 |
| not modelled | 99.7 | 16 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
48 | d2ouxa2 |
| not modelled | 99.7 | 14 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
49 | d2yzqa1 |
| not modelled | 99.7 | 12 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
50 | d2ef7a1 |
| not modelled | 99.7 | 13 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
51 | c1vr9B_ |
| not modelled | 99.7 | 16 | PDB header:unknown function Chain: B: PDB Molecule:cbs domain protein/act domain protein; PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution
52 | d2riha1 |
| not modelled | 99.7 | 13 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
53 | d2rc3a1 |
| not modelled | 99.7 | 13 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
54 | d2yzia1 |
| not modelled | 99.7 | 19 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
55 | d2v8qe1 |
| not modelled | 99.7 | 18 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
56 | d1zfja4 |
| not modelled | 99.7 | 7 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
57 | c2p9mD_ |
| not modelled | 99.7 | 20 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661
58 | d1y5ha3 |
| not modelled | 99.7 | 20 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
59 | d1pvma4 |
| not modelled | 99.7 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
60 | c3gbyA_ |
| not modelled | 99.7 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ct1051; PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum
61 | d2p4pa1 |
|  | 99.7 | 52 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
62 | d1o50a3 |
| not modelled | 99.7 | 15 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
63 | d2o16a3 |
| not modelled | 99.7 | 16 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
64 | d1pbja3 |
| not modelled | 99.7 | 16 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
65 | c2qlvF_ |
| not modelled | 99.7 | 17 | PDB header:transferase/protein binding Chain: F: PDB Molecule:nuclear protein snf4; PDBTitle: crystal structure of the heterotrimer core of the s.2 cerevisiae ampk homolog snf1
66 | d2ooxe2 |
| not modelled | 99.6 | 14 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
67 | c2pfiA_ |
| not modelled | 99.6 | 13 | PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka
68 | c2qr1E_ |
| not modelled | 99.6 | 15 | PDB header:transferase Chain: E: PDB Molecule:protein c1556.08c; PDBTitle: crystal structure of the adenylate sensor from amp-activated protein2 kinase in complex with adp
69 | d2yvxa2 |
| not modelled | 99.6 | 13 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
70 | c2v8qE_ |
| not modelled | 99.6 | 18 | PDB header:transferase Chain: E: PDB Molecule:5'-amp-activated protein kinase subunit gamma-1; PDBTitle: crystal structure of the regulatory fragment of mammalian2 ampk in complexes with amp
71 | c3kpbA_ |
| not modelled | 99.6 | 14 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine.
72 | c3fhmD_ |
| not modelled | 99.6 | 15 | PDB header:structural genomics, unknown function, n Chain: D: PDB Molecule:uncharacterized protein atu1752; PDBTitle: crystal structure of the cbs-domain containing protein atu1752 from2 agrobacterium tumefaciens
73 | d3ddja2 |
| not modelled | 99.6 | 21 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
74 | c3ddjA_ |
| not modelled | 99.5 | 23 | PDB header:amp-binding protein Chain: A: PDB Molecule:cbs domain-containing protein; PDBTitle: crystal structure of a cbs domain-containing protein in complex with2 amp (sso3205) from sulfolobus solfataricus at 1.80 a resolution
75 | c3kh5A_ |
| not modelled | 99.5 | 18 | PDB header:unknown function Chain: A: PDB Molecule:protein mj1225; PDBTitle: crystal structure of protein mj1225 from methanocaldococcus2 jannaschii, a putative archaeal homolog of g-ampk.
76 | c3l31B_ |
| not modelled | 99.4 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp
77 | c2yzqA_ |
| not modelled | 99.4 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph1780; PDBTitle: crystal structure of uncharacterized conserved protein from2 pyrococcus horikoshii
78 | d2yzqa2 |
| not modelled | 99.3 | 22 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
79 | c3fioB_ |
| not modelled | 98.0 | 18 | PDB header:nucleotide binding protein, metal bindin Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain
80 | d1jcna4 |
| not modelled | 97.4 | 24 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
81 | d1jr1a4 |
| not modelled | 97.3 | 22 | Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair
82 | d1udxa3 |
| not modelled | 74.8 | 18 | Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain
83 | d2pp6a1 |
| not modelled | 52.1 | 36 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like
84 | c2ejbA_ |
| not modelled | 40.0 | 11 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
85 | d1pbwa_ |
| not modelled | 37.0 | 11 | Fold:GTPase activation domain, GAP Superfamily:GTPase activation domain, GAP Family:BCR-homology GTPase activation domain (BH-domain)
86 | c3hczA_ |
| not modelled | 36.3 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:possible thiol-disulfide isomerase; PDBTitle: the crystal structure of a domain of possible thiol-disulfide2 isomerase from cytophaga hutchinsonii atcc 33406.
87 | c3nwuB_ |
| not modelled | 33.9 | 36 | PDB header:hydrolase Chain: B: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
88 | d1t3ta1 |
| not modelled | 33.4 | 14 | Fold:RuvA C-terminal domain-like Superfamily:FGAM synthase PurL, linker domain Family:FGAM synthase PurL, linker domain
89 | c3nziA_ |
| not modelled | 33.3 | 33 | PDB header:hydrolase/hydrolase substrate Chain: A: PDB Molecule:serine protease htra1; PDBTitle: substrate induced remodeling of the active site regulates htra12 activity
90 | d1g8fa1 |
| not modelled | 33.2 | 17 | Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain
91 | d1lcya2 |
| not modelled | 32.7 | 29 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
92 | c3ia1A_ |
| not modelled | 31.5 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus
93 | d2qf3a1 |
| not modelled | 31.0 | 27 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
94 | d2a29a1 |
| not modelled | 30.3 | 17 | Fold:Metal cation-transporting ATPase, ATP-binding domain N Superfamily:Metal cation-transporting ATPase, ATP-binding domain N Family:Metal cation-transporting ATPase, ATP-binding domain N
95 | c3k6zA_ |
| not modelled | 30.3 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:possible membrane-associated serine protease; PDBTitle: crystal structure of rv3671c protease, inactive form
96 | c2rceI_ |
| not modelled | 30.2 | 29 | PDB header:hydrolase Chain: I: PDB Molecule:protease degs; PDBTitle: dfp modified degs delta pdz
97 | c3lwaA_ |
| not modelled | 29.9 | 11 | PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a
98 | d1nq4a_ |
| not modelled | 28.8 | 16 | Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP)
99 | d1l1ja_ |
| not modelled | 28.5 | 36 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
100 | d1y0na_ |
| not modelled | 27.2 | 13 | Fold:YehU-like Superfamily:YehU-like Family:YehU-like
101 | c3ce7A_ |
| not modelled | 25.9 | 22 | PDB header:biosynthetic protein Chain: A: PDB Molecule:specific mitochodrial acyl carrier protein; PDBTitle: crystal structure of toxoplasma specific mitochodrial acyl2 carrier protein, 59.m03510
102 | d1or5a_ |
| not modelled | 25.3 | 13 | Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP)
103 | c1pbwB_ |
| not modelled | 24.6 | 6 | PDB header:phosphotransferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase; PDBTitle: structure of bcr-homology (bh) domain
104 | c3stiC_ |
| not modelled | 24.5 | 29 | PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease domain of degq from escherichia coli
105 | d1yj5a1 |
| not modelled | 24.4 | 10 | Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase
106 | d1ky9a2 |
| not modelled | 24.2 | 29 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Prokaryotic proteases
107 | d1x6va1 |
| not modelled | 23.8 | 20 | Fold:PUA domain-like Superfamily:PUA domain-like Family:ATP sulfurylase N-terminal domain
108 | d1h2sa_ |
| not modelled | 23.2 | 7 | Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like
109 | d1p0za_ |
| not modelled | 23.0 | 27 | Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase
110 | d1uaza_ |
| not modelled | 22.9 | 11 | Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like
111 | c1r6xA_ |
| not modelled | 21.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:atp:sulfate adenylyltransferase; PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0