BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (112 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADB2 Osmotically-inducible lipoprotein E n=109 Tax=En... 233 1e-60 UniRef50_C6DFZ7 SmpA/OmlA domain protein n=7 Tax=Enterobacteriac... 121 8e-27 UniRef50_B7V1T9 Osmotically inducible lipoprotein OsmE n=11 Tax=... 72 4e-12 UniRef50_A4VII8 Osmotically inducible lipoprotein OsmE n=6 Tax=P... 64 1e-09 UniRef50_B0KU54 SmpA/OmlA domain protein n=1 Tax=Pseudomonas put... 61 1e-08 UniRef50_B3D786 Lipoprotein n=17 Tax=Burkholderia RepID=B3D786_B... 49 5e-05 UniRef50_A1UVX3 Osmotically-inducible lipoprotein OsmE n=32 Tax=... 46 4e-04 >UniRef50_P0ADB2 Osmotically-inducible lipoprotein E n=109 Tax=Enterobacteriaceae RepID=OSME_ECO57 Length = 112 Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/112 (100%), Positives = 112/112 (100%) Query: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS Sbjct: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 Query: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK Sbjct: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 >UniRef50_C6DFZ7 SmpA/OmlA domain protein n=7 Tax=Enterobacteriaceae RepID=C6DFZ7_PECCP Length = 110 Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 55/109 (50%), Positives = 76/109 (69%) Query: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 M N + AAA MLAGC+AY++ + +PVVKDVK GM++ QV QIAG +E Sbjct: 1 MKNNRLLMCIAAAGAVMLAGCSAYNKAESYVNEPVVKDVKVGMTKQQVHQIAGTGGTEKR 60 Query: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQ 109 +++A+GTC Y+L RDG A+ YFV+ +DTGHV+N G+Q+C YDT+PQ Sbjct: 61 LVNAKGTCSDYLLKNRDGTAQNYFVSYNDTGHVLNKGFQSCQAYDTNPQ 109 >UniRef50_B7V1T9 Osmotically inducible lipoprotein OsmE n=11 Tax=Pseudomonas RepID=B7V1T9_PSEA8 Length = 114 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 12/112 (10%) Query: 9 LSAAAVLTMLAGCTAYDRTKDQ----FV----QPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 L+A V+ LAGC + TK Q ++ +P+VKDV+KGMS+ +V +I G PS Sbjct: 6 LAALFVMATLAGCAS---TKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQK 62 Query: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 + G+C +YIL +DG+ + ++V+ D +G V SG+ +C+E D + A+ Sbjct: 63 RLMKPGSCNSYIL-NKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDAR 113 >UniRef50_A4VII8 Osmotically inducible lipoprotein OsmE n=6 Tax=Pseudomonas RepID=A4VII8_PSEU5 Length = 113 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%) Query: 9 LSAAAVLTMLAGCTA-----YDRT--KDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSM 61 L A L ++ GC+ DR +D+ P+V+DV+ GM++A+V I G+PS + Sbjct: 6 LFFIAPLALVIGCSGNVQNPVDRITYRDE---PLVRDVETGMTQARVLSIGGEPSRATAR 62 Query: 62 IHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTD 107 G C YIL RDGK + Y+V+ D G V G+ TC + + + Sbjct: 63 TVVPGLCHDYIL-NRDGKQQPYYVSFDSAGRVDGQGFLTCKQLEEN 107 >UniRef50_B0KU54 SmpA/OmlA domain protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KU54_PSEPG Length = 118 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Query: 33 QPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGH 92 QP+V V GMS+ QV QI GKP +E GTC Y+L Q GK + Y V+ D G Sbjct: 28 QPLVAKVGTGMSKDQVVQIGGKPDAETDRTVVPGTCFDYMLTQA-GKRQPYSVSFDGNGK 86 Query: 93 VINSGYQTCAEY 104 V + + TCAE+ Sbjct: 87 VDKTAFMTCAEW 98 >UniRef50_B3D786 Lipoprotein n=17 Tax=Burkholderia RepID=B3D786_BURM1 Length = 118 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 6 AGILSAAAVLTMLAGCTAYDRTK--DQFVQPVVKDV-KKGMSRAQVAQIAGKPSSEVSMI 62 A LS AA ML GC +D PV K + G +R V G P S + Sbjct: 5 AATLSLAAGCLMLHGCAWFDAWLPFSYSRMPVPKAASRHGATRDTVVHAGGNPRSVWMVR 64 Query: 63 HARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYD 105 + G C Y+L D + YFV D G V + G+ TC D Sbjct: 65 NGSGVCYNYLLEHGDER-RPYFVVFDRAGAVTHHGFDTCMNAD 106 >UniRef50_A1UVX3 Osmotically-inducible lipoprotein OsmE n=32 Tax=Burkholderia RepID=A1UVX3_BURMS Length = 131 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%) Query: 2 NKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQ---PVVKDV-KKGMSRAQVAQIAGKPSS 57 N+ ++ + A +++GC+ + D F P+ K + G ++AQ+ + G P+S Sbjct: 7 NRTVSALACPFAAALLMSGCSWFGGWFDSFSYARLPLPKAAAQPGATQAQIVKAGGNPAS 66 Query: 58 EVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTD 107 + + G C Y L + Y+V D G V G+ TCA+ D + Sbjct: 67 VWMVRNGAGVCYNYDL-RHGNDHRPYYVVFDRRGIVSRHGFSTCAQADRE 115 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADB2 Osmotically-inducible lipoprotein E n=109 Tax=En... 157 6e-38 UniRef50_C6DFZ7 SmpA/OmlA domain protein n=7 Tax=Enterobacteriac... 149 3e-35 UniRef50_A1UVX3 Osmotically-inducible lipoprotein OsmE n=32 Tax=... 134 8e-31 UniRef50_B3D786 Lipoprotein n=17 Tax=Burkholderia RepID=B3D786_B... 133 2e-30 UniRef50_A4VII8 Osmotically inducible lipoprotein OsmE n=6 Tax=P... 128 6e-29 UniRef50_B7V1T9 Osmotically inducible lipoprotein OsmE n=11 Tax=... 127 8e-29 UniRef50_B0KU54 SmpA/OmlA domain protein n=1 Tax=Pseudomonas put... 104 1e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0ADB2 Osmotically-inducible lipoprotein E n=109 Tax=Enterobacteriaceae RepID=OSME_ECO57 Length = 112 Score = 157 bits (398), Expect = 6e-38, Method: Composition-based stats. Identities = 112/112 (100%), Positives = 112/112 (100%) Query: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS Sbjct: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 Query: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK Sbjct: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 >UniRef50_C6DFZ7 SmpA/OmlA domain protein n=7 Tax=Enterobacteriaceae RepID=C6DFZ7_PECCP Length = 110 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 55/109 (50%), Positives = 76/109 (69%) Query: 1 MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVS 60 M N + AAA MLAGC+AY++ + +PVVKDVK GM++ QV QIAG +E Sbjct: 1 MKNNRLLMCIAAAGAVMLAGCSAYNKAESYVNEPVVKDVKVGMTKQQVHQIAGTGGTEKR 60 Query: 61 MIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQ 109 +++A+GTC Y+L RDG A+ YFV+ +DTGHV+N G+Q+C YDT+PQ Sbjct: 61 LVNAKGTCSDYLLKNRDGTAQNYFVSYNDTGHVLNKGFQSCQAYDTNPQ 109 >UniRef50_A1UVX3 Osmotically-inducible lipoprotein OsmE n=32 Tax=Burkholderia RepID=A1UVX3_BURMS Length = 131 Score = 134 bits (337), Expect = 8e-31, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%) Query: 2 NKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQ---PVVKDV-KKGMSRAQVAQIAGKPSS 57 N+ ++ + A +++GC+ + D F P+ K + G ++AQ+ + G P+S Sbjct: 7 NRTVSALACPFAAALLMSGCSWFGGWFDSFSYARLPLPKAAAQPGATQAQIVKAGGNPAS 66 Query: 58 EVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTD 107 + + G C Y L + Y+V D G V G+ TCA+ D + Sbjct: 67 VWMVRNGAGVCYNYDL-RHGNDHRPYYVVFDRRGIVSRHGFSTCAQADRE 115 >UniRef50_B3D786 Lipoprotein n=17 Tax=Burkholderia RepID=B3D786_BURM1 Length = 118 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Query: 6 AGILSAAAVLTMLAGCTAYDRT--KDQFVQPVVKDV-KKGMSRAQVAQIAGKPSSEVSMI 62 A LS AA ML GC +D PV K + G +R V G P S + Sbjct: 5 AATLSLAAGCLMLHGCAWFDAWLPFSYSRMPVPKAASRHGATRDTVVHAGGNPRSVWMVR 64 Query: 63 HARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQ 109 + G C Y+L D + YFV D G V + G+ TC D + Sbjct: 65 NGSGVCYNYLLEHGDER-RPYFVVFDRAGAVTHHGFDTCMNADRSGR 110 >UniRef50_A4VII8 Osmotically inducible lipoprotein OsmE n=6 Tax=Pseudomonas RepID=A4VII8_PSEU5 Length = 113 Score = 128 bits (321), Expect = 6e-29, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 7/110 (6%) Query: 8 ILSAAAVLTMLAGCTA-----YDRTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMI 62 L A L ++ GC+ DR +P+V+DV+ GM++A+V I G+PS + Sbjct: 5 TLFFIAPLALVIGCSGNVQNPVDRI-TYRDEPLVRDVETGMTQARVLSIGGEPSRATART 63 Query: 63 HARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 G C YIL RDGK + Y+V+ D G V G+ TC + + + + + Sbjct: 64 VVPGLCHDYIL-NRDGKQQPYYVSFDSAGRVDGQGFLTCKQLEENQRNLR 112 >UniRef50_B7V1T9 Osmotically inducible lipoprotein OsmE n=11 Tax=Pseudomonas RepID=B7V1T9_PSEA8 Length = 114 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 6/109 (5%) Query: 9 LSAAAVLTMLAGCTAYD-----RTKDQFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMIH 63 L+A V+ LAGC + +P+VKDV+KGMS+ +V +I G PS + Sbjct: 6 LAALFVMATLAGCASTKVQNPVNYITFRNEPLVKDVEKGMSQQEVLRIGGTPSGTQKRLM 65 Query: 64 ARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCAEYDTDPQAAK 112 G+C +YIL +DG+ + ++V+ D +G V SG+ +C+E D + A+ Sbjct: 66 KPGSCNSYIL-NKDGQQQPFYVSFDGSGKVDGSGFLSCSELDRHERDAR 113 >UniRef50_B0KU54 SmpA/OmlA domain protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KU54_PSEPG Length = 118 Score = 104 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 30 QFVQPVVKDVKKGMSRAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDD 89 QP+V V GMS+ QV QI GKP +E GTC Y+L Q GK + Y V+ D Sbjct: 25 YQDQPLVAKVGTGMSKDQVVQIGGKPDAETDRTVVPGTCFDYMLTQA-GKRQPYSVSFDG 83 Query: 90 TGHVINSGYQTCAEYDTDPQAAK 112 G V + + TCAE+ A+ Sbjct: 84 NGKVDKTAFMTCAEWSNAQHKAR 106 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.127 0.341 Lambda K H 0.267 0.0383 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 374,301,820 Number of Sequences: 3077464 Number of extensions: 11618480 Number of successful extensions: 32316 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 12 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 32290 Number of HSP's gapped (non-prelim): 15 length of query: 112 length of database: 1,040,396,356 effective HSP length: 80 effective length of query: 32 effective length of database: 794,199,236 effective search space: 25414375552 effective search space used: 25414375552 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 87 (38.2 bits)