BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (220 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 461 e-128 UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ... 279 4e-74 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 210 4e-53 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 114 3e-24 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 108 1e-22 UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae... 107 3e-22 UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 T... 96 1e-18 UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 T... 94 4e-18 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 94 5e-18 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 82 2e-14 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 80 3e-14 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 80 6e-14 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 79 7e-14 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 79 8e-14 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 79 8e-14 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 78 3e-13 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 77 3e-13 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 77 5e-13 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 77 6e-13 UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 T... 76 6e-13 UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp.... 75 1e-12 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 75 1e-12 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 75 2e-12 UniRef50_B0V610 Putative DNA exonuclease X n=2 Tax=Acinetobacter... 75 2e-12 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 75 2e-12 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 74 3e-12 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 74 4e-12 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 74 4e-12 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 74 5e-12 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 74 5e-12 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 74 5e-12 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 74 5e-12 UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acin... 73 6e-12 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 73 7e-12 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 73 9e-12 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 72 9e-12 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 72 1e-11 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 72 2e-11 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 72 2e-11 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 72 2e-11 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 72 2e-11 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 71 3e-11 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 71 3e-11 UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID... 70 4e-11 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 70 5e-11 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 70 6e-11 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 70 7e-11 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 70 7e-11 UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exo... 69 1e-10 UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinet... 69 2e-10 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 69 2e-10 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 68 2e-10 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 68 2e-10 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 68 2e-10 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 68 3e-10 UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis ... 67 3e-10 UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 T... 67 4e-10 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 67 4e-10 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 67 4e-10 UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit... 67 5e-10 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 67 6e-10 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 66 7e-10 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 66 7e-10 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 66 7e-10 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 66 8e-10 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 66 8e-10 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 65 1e-09 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 65 1e-09 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 65 2e-09 UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=... 65 2e-09 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 65 2e-09 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 65 2e-09 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 65 2e-09 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 65 2e-09 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 65 2e-09 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 65 2e-09 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 65 2e-09 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 65 2e-09 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 65 2e-09 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 64 3e-09 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 64 3e-09 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 64 3e-09 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 64 3e-09 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 64 3e-09 UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 64 3e-09 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 64 4e-09 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 64 5e-09 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 63 6e-09 UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginos... 63 7e-09 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 63 7e-09 UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 T... 63 7e-09 UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' ex... 63 7e-09 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 63 7e-09 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 63 8e-09 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 63 8e-09 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 62 1e-08 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 62 1e-08 UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit ... 62 1e-08 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 62 1e-08 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 62 1e-08 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 62 2e-08 UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 T... 62 2e-08 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 62 2e-08 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 62 2e-08 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 62 2e-08 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 62 2e-08 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 62 2e-08 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 61 2e-08 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 61 2e-08 UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT 61 2e-08 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 61 2e-08 UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' ex... 61 3e-08 UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit... 61 3e-08 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 61 3e-08 UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptospora... 61 3e-08 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 61 3e-08 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 61 3e-08 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 61 3e-08 UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria Re... 61 3e-08 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 61 3e-08 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 61 3e-08 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 61 3e-08 UniRef50_A1WP16 Exodeoxyribonuclease X n=4 Tax=Proteobacteria Re... 61 3e-08 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 60 4e-08 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 60 4e-08 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 60 4e-08 UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri R... 60 5e-08 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 60 5e-08 UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU... 60 5e-08 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 60 6e-08 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 60 6e-08 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 60 6e-08 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 60 6e-08 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 60 7e-08 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 60 7e-08 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 60 8e-08 UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 60 8e-08 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 60 8e-08 UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta... 59 9e-08 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 59 9e-08 UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio... 59 1e-07 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 59 1e-07 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 59 1e-07 UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rh... 59 1e-07 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 59 1e-07 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 59 1e-07 UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 T... 59 1e-07 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 59 1e-07 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 59 1e-07 UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 T... 59 1e-07 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 59 1e-07 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 59 2e-07 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 59 2e-07 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 59 2e-07 UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudom... 58 2e-07 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 58 2e-07 UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 T... 58 2e-07 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 58 2e-07 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 58 2e-07 UniRef50_B2HWM0 DNA polymerase III, epsilon subunit n=1 Tax=Acin... 58 2e-07 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 58 2e-07 UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lact... 58 2e-07 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 58 3e-07 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 58 3e-07 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 58 3e-07 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 58 3e-07 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 58 3e-07 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 58 3e-07 UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS 57 3e-07 UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 57 3e-07 UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella... 57 3e-07 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 57 3e-07 UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dict... 57 3e-07 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 57 4e-07 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 57 4e-07 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 57 4e-07 UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 57 4e-07 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 57 4e-07 UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 ... 57 4e-07 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 57 4e-07 UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha c... 57 4e-07 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 57 4e-07 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 57 5e-07 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 57 5e-07 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 57 5e-07 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 57 5e-07 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 57 5e-07 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 57 6e-07 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 57 6e-07 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 57 6e-07 UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph... 57 6e-07 UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam... 57 6e-07 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 56 7e-07 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 56 7e-07 UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 56 7e-07 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 56 7e-07 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 56 7e-07 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 56 8e-07 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 56 8e-07 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 56 8e-07 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 56 8e-07 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 56 8e-07 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 56 8e-07 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 56 9e-07 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 56 9e-07 UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 56 9e-07 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 56 9e-07 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 56 1e-06 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 56 1e-06 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 56 1e-06 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 56 1e-06 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 56 1e-06 UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo... 56 1e-06 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 56 1e-06 UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulu... 56 1e-06 UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2... 55 1e-06 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 55 1e-06 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 55 1e-06 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 55 1e-06 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 55 1e-06 UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 55 1e-06 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 55 1e-06 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 55 1e-06 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 55 1e-06 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 55 1e-06 UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1... 55 1e-06 UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related ... 55 1e-06 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 55 1e-06 UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limno... 55 2e-06 UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 T... 55 2e-06 UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 T... 55 2e-06 UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 T... 55 2e-06 UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=... 55 2e-06 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 55 2e-06 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 55 2e-06 UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidob... 55 2e-06 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 55 2e-06 UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl... 55 2e-06 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 55 2e-06 UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto... 55 2e-06 UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacte... 54 3e-06 UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister i... 54 3e-06 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 54 3e-06 UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr... 54 3e-06 UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herp... 54 3e-06 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 54 3e-06 UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orienti... 54 3e-06 UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root R... 54 3e-06 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 54 3e-06 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 54 3e-06 >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD Sbjct: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 Query: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT Sbjct: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 >UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 Tax=Enterobacteriaceae RepID=A8GD51_SERP5 Length = 222 Score = 279 bits (714), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 134/218 (61%), Positives = 163/218 (74%), Gaps = 2/218 (0%) Query: 2 LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 LR+IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI +AMAIH ITE MV K Sbjct: 3 LRVIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGK 62 Query: 62 PWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTR 121 P I I Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N L Sbjct: 63 PRIAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYAL 122 Query: 122 KLNVQTPPG--LHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKY 179 L+VQ P L+ HRALYDCY+TAALL I+ SGWT EQMA IT +P L+ F FGKY Sbjct: 123 NLDVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKY 182 Query: 180 RGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 RG+ + VA+ DPGYLRW+ +++ +SP+++ TLK+YL Sbjct: 183 RGQEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 6/221 (2%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 MLR+IDTET GL+GG +VE+ASVD++DG I NPMS LV+P I +AMAIH ITE M Sbjct: 1 MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60 Query: 58 VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIK-YSNMA 116 V P + +VI Y G++ YVAHNA FD+ LP++ WICT KLAR L P K +SN Sbjct: 61 VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120 Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176 L + L + P GL+ HRALYDCY+TA LL+ + + WT +M I+ PSL+ F Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180 Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 GK++G + +++A+ +PGYLRWL N D ++ T H+L Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 119/230 (51%), Gaps = 22/230 (9%) Query: 4 IIDTETCGL--QGGIVEIASVDVIDGKIVNPM---SHLVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL +G +VE+A V+V G P S LV P PI P+A A+H IT+ V Sbjct: 10 VVDTETTGLPPEGRVVELALVEV--GLECEPQIVYSALVDPGCPIPPEASAVHHITDRDV 67 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLW-PGIKYSN 114 A KP + V P Y G VAHNA FDR +LPE WIC+ +LA+ LW K+SN Sbjct: 68 AGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKHSN 127 Query: 115 MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT---SGW--TAEQMADITGRPS 169 L ++V+ HRAL D +TA + + +G+ +++ P Sbjct: 128 QVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAESPI 184 Query: 170 LMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + T FGK++G + +V YL W NL +SP+LR +++ LE Sbjct: 185 EVQTMPFGKHKGMPLKEVPL---DYLDWALRNLQDLSPDLRWSMQRVLEQ 231 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 30/239 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDV-IDG-KIVNPMSHLVRPDRPISPQAMAIHRIT 54 ++R+ID ET G Q ++E VDV +D IVNP L +P PI P MA+H IT Sbjct: 8 IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67 Query: 55 EAMVADKPWIEDV-IPHYYG--SEWYV-AHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110 + VAD P V P + G SE YV AHNA F++ +WICT K A +WP Sbjct: 68 DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127 Query: 111 -KYSNMAL---------YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 + N AL + + + PP HRAL D Y+TA +L++++ T E+ Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPP----HRALPDAYVTAHILLELLKHK--TPEE 181 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + I+ P+L+TT FGK++G S E YL W+ N D + + + + +++L+ Sbjct: 182 LVQISEYPALLTTLRFGKHKGMKYS---EAPTDYLDWIVNKSD-LDEDTKFSSRYWLKK 236 >UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae RepID=Q0G0B0_9RHIZ Length = 266 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 23/216 (10%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDV--IDGKIVNPMSHLVRPDRP-ISPQAMAIHRIT 54 ++R+IDTET GL + ++EI SVD+ + G I NPM P IS A +H+IT Sbjct: 22 IVRVIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQIT 81 Query: 55 EAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSN 114 + M+ P D + + +E Y A A FDR L + G W+CT KLA R +P ++ Sbjct: 82 DEMLVGAPPFSDAV-KPFNTETYAAQRADFDRSRL-RLTGRWLCTHKLALRAFPNVRAHG 139 Query: 115 M-ALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD------ 163 + +L K L++ Q GLH HRAL+D TA LL I ++D Sbjct: 140 LQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVLLRRIAEELTPHCHDLSDFLERAE 199 Query: 164 -ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 ++ P+L+ FG+++G + +V YL+WL Sbjct: 200 KVSNEPALLAKLRFGRHKGIPIREVPT---DYLQWL 232 >UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HKJ8_GLUDA Length = 269 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 110/236 (46%), Gaps = 27/236 (11%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDVI---DGK---IVNPMSHLVRPDRPISPQAMAIH 51 +R+ID ET G GGIVEI DV DG P + L P PI+PQ MAIH Sbjct: 15 FVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIH 74 Query: 52 RITEAMVADKPWIEDVIPHYYG----SEWYVAHNASFD----RRVLPEMPG---EWICTM 100 IT+A V D P ++ P AH ASF+ R LP WICT Sbjct: 75 HITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTY 134 Query: 101 KLARRLWPG-IKYSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 K A RLWP +SN L +R+ ++ G HRA D Y+TA L D++ + T Sbjct: 135 KCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDMLALA--TV 192 Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 EQ+ + P+L+T G RG+ + ++A G L L P+L TL+ Sbjct: 193 EQLLRWSREPALLTRVPHGPLRGRQIRNLAT---GDLDRLLAEDRRRGPDLAFTLR 245 >UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 Tax=Alphaproteobacteria RepID=C6B6E1_RHILS Length = 262 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 74/203 (36%), Positives = 100/203 (49%), Gaps = 28/203 (13%) Query: 2 LRIIDTETCGLQ-GGIVEIASVDVIDGKI------VNPMSHLVRPDRPISPQAMAIHRIT 54 +R++D ET G + E+ DV+ G S L+ P RPISP+ MAIH I Sbjct: 19 IRVVDLETAGNGLNDVCEVGWQDVVLGHDGGWQVDEERGSLLINPGRPISPETMAIHHIV 78 Query: 55 EAMVADKPWIEDVIPHYYGSEWYV----AHNASFDRR-VLPEMPG--EWICTMKLARRLW 107 +A VA P+ +++ E V AH ASF++R P G WICT K A RLW Sbjct: 79 DAEVATAPFWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTWKCALRLW 138 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHH------HRALYDCYITAALLIDIMNTSGWTAEQ 160 P + ++SN L R P GL H HRA+ D Y+TA L D++N S T EQ Sbjct: 139 PELPRFSNQMLRYLR-----MPEGLVHAIGLPAHRAMPDAYVTAHHLRDMLNES--TFEQ 191 Query: 161 MADITGRPSLMTTFTFGKYRGKA 183 + + P L+ G RGK+ Sbjct: 192 LVKWSSEPGLLPRVPSGPERGKS 214 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 29/240 (12%) Query: 4 IIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+DTET G + I++++ + + + +I LV+P PIS +AMA+H IT MV D Sbjct: 5 ILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMVED 64 Query: 61 KPWIEDVIPHYYGSEW------YVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGI 110 KP I+ + E V HNA FD +L + + I T ++ + L P Sbjct: 65 KPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIPEG 124 Query: 111 KYS------NMALYKTRK-----LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 K+S + LYK K N+Q ++ H AL D + L ++ E Sbjct: 125 KFSLQYNRYALGLYKKEKDICEKYNIQ----INAHDALGDVIVLGLLFEYLVTNFEKNVE 180 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 ++ ++T +P L F GKY+ + + DV +DP Y+ ++ +L + P+++ +++H+LEN Sbjct: 181 ELVELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 18/164 (10%) Query: 4 IIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++DTET GL QG ++EI +V V +G+I ++ L+ PIS A +H I+E M+A Sbjct: 6 VVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQMLA 65 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 +P ++V P + G+ VAHNA+FDR + + W CT++L+RR P Sbjct: 66 GRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRKLP 125 Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + + +YK L + P + HRAL D + A + ++++ Sbjct: 126 RLMNHKLETVYK--HLFGELPEEVQRHRALDDARMAARVWVELL 167 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 22/157 (14%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISP-QAMAIHRITEAMVA 59 IID ET GL ++E+A++ G I++ + HL +P P + + + IT AMV Sbjct: 14 IIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAMVI 73 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLW 107 DKP+ ED+ P Y VAHNA FD L E+ +ICT LARR++ Sbjct: 74 DKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARRIF 133 Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYIT 143 P I+ ++ +L +N + HRAL D T Sbjct: 134 PEIQKKSLSSLTNYLGINFKQK-----HRALSDAQAT 165 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 79.7 bits (195), Expect = 6e-14, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 18/160 (11%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +ID ET GL ++E+ +V+++DG+I L P P+S + AI I+ AM+ Sbjct: 546 VIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAMLV 605 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---EMPGEW-----ICTMKLARRLWP 108 D P + +VI + VAHNA FDRR L E G W +CTM+L +R +P Sbjct: 606 DAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRAYP 665 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 G+ +A + V P + HRAL D TA L + Sbjct: 666 GLGSYKLA-FLAEHAGVALPDAM--HRALADAMATAELFL 702 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 20/166 (12%) Query: 4 IIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ++DTET G I+E+A+V V G+IV + L+ P R + P + IT AM+ + Sbjct: 10 VVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLVGR 69 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM--------PGE-WICTMKLARRLWPG 109 P ++V+P + G VAHN +FDR++L PG +CT++LARRL PG Sbjct: 70 PSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLLPG 129 Query: 110 IKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 + + L + ++ V+ + HRAL D TA +L+ ++ + Sbjct: 130 LPAKGLDGLIRFYQIPVE-----NRHRALGDAEATAHVLLRLLEEA 170 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 25/235 (10%) Query: 1 MLRIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ML +D ET GL+ G I I + V + I + LV + IS +A +I+ IT M+ Sbjct: 1 MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59 Query: 59 ADKPWIEDV----IPHYYG--SEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWP 108 DKP +D I H S +AHN +FD ++L + G+ + T+++ + L P Sbjct: 60 KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119 Query: 109 G--------IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 ++Y + LYK +K + + H AL D L ++ + Sbjct: 120 ECEEFSLQFLRYE-LKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIK--EHD 176 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 ++ ++ + L+ F FGKY+G+ + +++ D GYL W+ ++ + +LR +++ Sbjct: 177 ELVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIR 231 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 28/208 (13%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G++ I+EI +V V DGK V+ S L+ P +SP + IT+ M+ DK Sbjct: 8 VDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEMLKDK 67 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110 P+IE+V+P + G + + HN FD L + I T+K+AR+ G+ Sbjct: 68 PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTLKGL 127 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170 + + N +HHRA D +T+ L +M G T P L Sbjct: 128 ESRGLEYL----CNYYGIADENHHRAFNDAEVTSKLYNVLMEKFG---------TESPGL 174 Query: 171 MTTFTFGKYRGKAVSDVAERDPGYLRWL 198 + ++ K + + +R YL+ L Sbjct: 175 FEPYQLV-FKAKKMQPITDRQKKYLKDL 201 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 32/245 (13%) Query: 4 IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 + DTET G + +++ ++ V + V L PI +AM +H IT ++ +K Sbjct: 6 LFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLENK 65 Query: 62 PWIEDVIPHYY--------GSEWYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPG 109 P + V ++Y + +AHN +FD ++ E + I T++ A+ L+ Sbjct: 66 P--KAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123 Query: 110 IKYSNMA-------LYKTRKLNVQTPPGL--HHHRALYDCYITAALLIDIMNT------S 154 + Y + LYK + N + G+ H A+ D + L ++ S Sbjct: 124 LPYHRLQYLRYALDLYKFEE-NEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182 Query: 155 GWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 E++ ++T P + TF FGKY+G+ + +VA+ D YL W+ +++ + +++ TL Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242 Query: 215 HYLEN 219 L N Sbjct: 243 KVLGN 247 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 27/174 (15%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL I+EI +V + DG+IV+ L++P R IS ++ I IT+ M+ + Sbjct: 360 VLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEMLEN 419 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRVLP-----------EMPGEWICTMKLARRL 106 K IE+V+P + G + VAHNA+FD R L E P +I T+ LA+ L Sbjct: 420 KRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTLALAKSL 477 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT 157 YS ++ + L HHRAL D +TA + +++M G T Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIGIT 526 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 24/161 (14%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET GL QG +EI +V + DGK+V+ L+ P IS + I+ AM+A Sbjct: 20 VLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAMLA 79 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDRRVL-PEMP-------GEWICTMKLARRLW- 107 D P E+V+ + G VAHNASFD+R L E+ G++ C+M +ARRL+ Sbjct: 80 DAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRLYQ 139 Query: 108 --PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 P K ++ YK N+Q HRAL D +TA+L Sbjct: 140 AAPNHKLGSLVSYK----NIQHDGVF--HRALADSEMTASL 174 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 19/166 (11%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I+E+A+V V DG+I++ P P+S M + IT+ MV D Sbjct: 431 VFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMVKD 490 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 P ++V+ + G VAHNASFD R ++ I T++LAR L+P Sbjct: 491 APKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYP 550 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +K + +K +++ HHRA+YD T LL+ ++ + Sbjct: 551 DLKNHRLNTL-CKKFDIEL---TQHHRAIYDAEATGHLLMRLLKEA 592 >UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES02_ACIF5 Length = 220 Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 18/222 (8%) Query: 4 IIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLV---RPDRPISPQAMAIHRITEAMVA 59 I DTET G ++ ++E A + V D + + V RP +PI AMA+H I E + Sbjct: 5 IFDTETTGRVEPELIEAAWLAVSDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILEEDLL 64 Query: 60 DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KYSNMAL 117 + P +P G + V H+ +D V+ + + ICT + R+LWP + +S AL Sbjct: 65 ESPPASSFRLPEDTG--YLVGHSIDYDWGVIGKPDVKRICTYAMTRKLWPEVDSHSQSAL 122 Query: 118 -YKTRKLNVQTPPGLHH-HRALYD---CYITAALLIDIMNTSGWTAEQMADITGRPSLMT 172 Y K +T L + H AL D C I +I + + W E + + + R + Sbjct: 123 MYHFSKDKRKTRDNLKNAHSALADVKFCRILLNKVILSVRPNSW--EDLWEFSERARIPE 180 Query: 173 TFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 T FGK++G ++D+ + Y RW NNL M LR L+ Sbjct: 181 TMPFGKHKGVKIADLPD---DYRRWALNNLTDMDTYLRKALE 219 >UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEC5_PSYWF Length = 237 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 33/231 (14%) Query: 4 IIDTETCGLQG--------GIVEI--ASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRI 53 I+DTET GL I+ I A ++VI P S P +PIS +MA I Sbjct: 5 ILDTETTGLVDPHMTEAAYSIIAINNAKIEVIQA----PRSKRFNPLKPISLGSMATSHI 60 Query: 54 TEAMVA-DKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWP 108 + VA + P E +P+ E+ V HN +D VL + ICT ++ L P Sbjct: 61 CDEDVAHEPPHTEFRLPN--SVEYLVGHNIDYDMAVLKNAGVTHTPKLICTKAMSSYLLP 118 Query: 109 GIKYSNMA--LYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT---AEQ 160 ++ + LY + V H H A+YD Y T +L I++ N+ G E Sbjct: 119 TLESHKLVSLLYHFHR-QVAREQAKHAHAAIYDIYFTQLVLGSLIELANSQGHNITDVES 177 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERD--PGYLRWLFNNLDSMSPEL 209 + + + T +FGKY+G+A++++A GYL+WL D++ P L Sbjct: 178 LYQFSEMARIPTHLSFGKYKGQAITELAASSDGAGYLKWLMGQ-DNIDPYL 227 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 27/173 (15%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDR------PISPQAMAIHR 52 + D ET GL + IVEI ++ V+DG++V LVRP PI +A +H Sbjct: 5 VFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRVHG 64 Query: 53 ITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM----------PGEWICT 99 I++AMV D P + V+P + G AHN FD + P E+ CT Sbjct: 65 ISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEY-CT 123 Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++L+RR +P + N+ + R L + PG HR+L D +TA + +M Sbjct: 124 VQLSRRAFPRERTHNLDVLAQR-LGLSFAPG-GRHRSLGDVQVTAEAFVRLME 174 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 22/177 (12%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL I+EIA++ V+DGKI S L+ P R I A AI+ IT MV + Sbjct: 80 VVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMVKN 139 Query: 61 KPWIEDVIPH---YYGSEWYVAHNA-SFDRRVLPE--MPGEWIC------TMKLARR-LW 107 P ++ VIP + + HN+ +D VL E +++C T KLAR+ L Sbjct: 140 APTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQILE 199 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 P K N+A ++LNV+ HRAL DCY+T + + S T E + I Sbjct: 200 PPYKLINIA----KRLNVKQ--HGKAHRALADCYMTYGIYEKMREISIATTENVKCI 250 >UniRef50_B0V610 Putative DNA exonuclease X n=2 Tax=Acinetobacter baumannii RepID=B0V610_ACIBY Length = 245 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 18/202 (8%) Query: 4 IIDTETCGLQGGIVEIASVDVI------DGKIVNPMSHLVR---PDRPISPQAMAIHRIT 54 I DTET L G I+E A+++V+ D I+ M + P PIS AMA+H I Sbjct: 5 IFDTETHKLHGDIIEAAAMEVVFPQISADILIIPTMFDFTKRYKPSEPISLGAMAVHHIV 64 Query: 55 EAMVADKPWIEDVIPHYYGSEWYVAHNASFD----RRVLPEMPG-EWICTMKLARRLWPG 109 + + P + ++ + HN +D +R + G + ICT+ +AR LWP Sbjct: 65 DEDLVKCPSFKTFKWPKENIQYLIGHNIDYDIEAVKRAGADTTGIKSICTLAMARYLWPT 124 Query: 110 IKYSNMA--LYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTA-EQMADIT 165 ++ N+ Y + T GL + H AL DC T LL I+ + +++ + Sbjct: 125 LEAHNLTALAYHISRDRKSTRRGLKNAHSALNDCKTTYGLLHTIVQEKNIKSFQELYLFS 184 Query: 166 GRPSLMTTFTFGKYRGKAVSDV 187 + + T +GKY+G A++D+ Sbjct: 185 EKARIPTHIFYGKYKGSAIADL 206 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 21/184 (11%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++DTET G I+EI V++++ + + V P+R I A +H IT+A Sbjct: 4 LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE----------MPGE-WICTMKLA 103 VA+ P +++ + G + V HNA FD R L MP E I T+ LA Sbjct: 64 VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 RR +PG + AL K +L V G H AL D ++ A + +++M + ++ E AD Sbjct: 124 RRKFPGSTVNLDALCK--RLGVDN-SGRTFHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180 Query: 164 ITGR 167 +GR Sbjct: 181 ESGR 184 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 28/232 (12%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D E GL + I+E A+ +++ M L+ PDR IS ++ IHRI++AM+ D+ Sbjct: 12 LDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAMLKDQ 71 Query: 62 PWIEDVIPHYYG----SEWYVAHNASFDRRVL---PEMPGE-------WICTMKLARRLW 107 P I +V P ++ V H+ FD +VL E GE I T++LA+ Sbjct: 72 PRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLAKEYG 131 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 S AL NV P +HRA+ D I + T EQ+ + + Sbjct: 132 DSPNNSLEAL--AVHFNV---PYDGNHRAMKDVEININIFKHFCK-RFRTIEQLKQVLSK 185 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 P M GK++G+ S++ YL+W + +D +L +++H +++ Sbjct: 186 PIKMKYMPLGKHKGRCFSEIP---LSYLQWA-SKMD-FDADLLFSIRHEIKH 232 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 73.6 bits (179), Expect = 4e-12, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 21/161 (13%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I+EI +V + G+IV+ S L+ P RPI I IT+ VA+ Sbjct: 429 VFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVAN 488 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRLWP 108 +P I++VI + G VAHNA FD + ++ I T+++AR L+P Sbjct: 489 EPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDLFP 548 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 + KY L KT L ++ HHRA+ D TA + I Sbjct: 549 DLKKYGLGDLNKTLGLALEK-----HHRAVDDSQATANMFI 584 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 81/179 (45%), Gaps = 30/179 (16%) Query: 4 IIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ++D ET GL G I EI +V + DG +V+ S LV+P RPI P ++ IT AMVAD Sbjct: 31 VVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVADA 90 Query: 62 PWIEDVIPHYYGSEW----------YVAHNASFDRRVLPEMPGE----W-----ICTMKL 102 I V+ H+ EW VAHNASFD L W + T+ L Sbjct: 91 APIASVLEHFL--EWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLAL 148 Query: 103 ARRLWPGIKYSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT 157 AR P N L T P HRAL D TA +L ID++ +G T Sbjct: 149 ARLALPRPLVRNHKLGTVASYFGTATVP---EHRALGDARATAEILLGFIDLLAAAGAT 204 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 19/166 (11%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + DTET GL + ++EIA+V V G+IV+ + L+ P+R + P+ + + IT MVA Sbjct: 429 VFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMVAG 488 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108 +P + + + + VAHNA FD L + I T+ LAR L+P Sbjct: 489 QPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVLYP 548 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 G K + T+K +V ++HHRAL D TA + + ++ + Sbjct: 549 GEKNYKLKTL-TQKFSVDL---VNHHRALADSEATAKVFVHMLKDA 590 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 20/156 (12%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++DTET GL I+EI + V + +IV+ L++P + A+ IT M+ D Sbjct: 24 VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDMLED 83 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGIKY 112 P I V + + + + HN SFD R L E + +++ TM+ AR+L+P +K+ Sbjct: 84 MPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPELKH 143 Query: 113 SNMALYKTRKLNVQTPPGLHH--HRALYDCYITAAL 146 ++ ++ GLH+ HRAL DC T L Sbjct: 144 HRLS-------DLTDYLGLHNNEHRALADCIATKEL 172 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 22/170 (12%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 I+DTET GL + G ++EI V+++D +I + H+ + P+R IS +A +H IT + Sbjct: 8 ILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQL 67 Query: 59 ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLPE-----------MPGEWICTMKLAR 104 AD P I D + GS VAHNASFD R L I T+ +AR Sbjct: 68 ADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMAR 127 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +++PG S AL + +++++ H AL D + A + I++ S Sbjct: 128 KIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIELSKGS 174 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 81/178 (45%), Gaps = 23/178 (12%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ID ET GL IVEI ++ G V P RPI +A+AIH IT+ MV Sbjct: 13 IDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMVEGA 72 Query: 62 PWIED----VIPHYYGSEWYVAHNASFDRRVLP----EMPGEW-----ICTMKLARRLWP 108 P + + + E V HN SFD L + G W T LAR+ +P Sbjct: 73 PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARKAFP 132 Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADI 164 GIK YS +AL + L+ G HHRAL DC +A+L I+ G+ + D+ Sbjct: 133 GIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKDL 185 >UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acinetobacter RepID=B2I3R4_ACIBC Length = 226 Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 27/230 (11%) Query: 4 IIDTETCGLQGGIVEIA--SVDVIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEAM 57 I+DTET L G +EIA + +G+++ + PI +AMA+H I E Sbjct: 5 ILDTETNKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEPIDLEAMAVHNIIETD 64 Query: 58 VADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWPGIKY 112 + +P E +P G E+ V HN +D + L P + + ICT+ LAR +WP + Sbjct: 65 IEGQPSCESFRLPE--GVEFIVGHNIDYDIKALNKCGPAIKVKTICTLALARDVWPDLTS 122 Query: 113 SNMAL--YKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGW----TAEQMADIT 165 +A+ Y + L H H A D Y T +LI ++ G + M++ Sbjct: 123 HKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGIKDLNSLYLMSEAV 182 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKH 215 P +M T+GK++G + ++ Y+ WL N D + P LR L++ Sbjct: 183 RLPKIM---TWGKHKGTPLKELPR---PYISWLLNKED-LDPHLRKALQN 225 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 73.2 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I EI +V ++D KIV+ + L+ P+ PI + + IT MV D Sbjct: 404 VFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMVKD 463 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLWPG 109 P I+ V+P + G +AHNA FD + + + +I T+ AR L P Sbjct: 464 MPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALEPH 523 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 +K + T+K NV +HHRA D T + I ++N Sbjct: 524 LKNHKLDTL-TKKYNVNL---FNHHRACDDARATGEVFICMVN 562 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 72.8 bits (177), Expect = 9e-12, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 18/163 (11%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL + I EI +V ++DG I S L+ P I + + RIT A+V + Sbjct: 403 VFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALVEN 462 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEWIC----TMKLARRLWPG 109 +P IE+V P +Y VAHNA FD RRV E ++I T+ AR Sbjct: 463 EPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATVKD 522 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 K N+A +K V + HRA+ D TA L I ++N Sbjct: 523 TKKFNLATL-CKKFGVSL---VGAHRAVNDAEATAHLFIKLIN 561 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 30/189 (15%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET G G IVEI +V IDG+ + L+ P RPI P A A++ I++ MV K Sbjct: 18 FDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMVKGK 77 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107 P I+ ++P + G + VAHNA FD + L P G + ++ +AR+++ Sbjct: 78 PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPR--GVILDSLPIARKVF 135 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMAD- 163 PG+ Y L + K+ P + HRA D + +M + G A Q+ + Sbjct: 136 PGLPNYKLGTLVQHLKI-----PTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190 Query: 164 --ITGRPSL 170 +TG+P L Sbjct: 191 IALTGKPEL 199 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 24/201 (11%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL + ++E A++ +I++ + L+ P+R +S ++ IH+I++AM+ DK Sbjct: 12 LDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAMLRDK 71 Query: 62 PWIEDVIPHYYG----SEWYVAHNASFDRRVL---PEMPGEW--------ICTMKLARRL 106 P +V G + V H+ FD +VL E GE I T++LA+ Sbjct: 72 PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLAKEY 131 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 S AL R NV P +HRA+ D + + + T Q+ I Sbjct: 132 GDSPNNSLEAL--ARHFNV---PHQGNHRAMKDVEMNVKVFKH-LTKRFRTLSQVTHILS 185 Query: 167 RPSLMTTFTFGKYRGKAVSDV 187 +P M GKY+G+ +D+ Sbjct: 186 KPIKMKYMPLGKYKGRLFTDI 206 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 18/160 (11%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +ID ET GL I+EI ++ G+IV + L+ P I +A I+ IT MV D Sbjct: 86 VIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMVKD 145 Query: 61 KPWIEDVIPHY--YGSEW-YVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 P IEDV+P + E+ VAHNASFD + L E+ I T++L+R ++ Sbjct: 146 SPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMYTF 205 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID 149 + + K L + HRAL DC TA + +D Sbjct: 206 LPNHKLTTIKEH-LCISEDNS---HRALPDCITTAEIYLD 241 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 35/181 (19%) Query: 4 IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54 ++DTET G+ Q G I+EI +V++I+ + H+ ++PDRP P A+ +H IT Sbjct: 9 VLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGIT 68 Query: 55 EAMVADKPWI----EDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWIC---- 98 + M+ADKP +D + + G+E + HNA FD R++ + + IC Sbjct: 69 DEMLADKPEFKEVAQDFLDYINGAELLI-HNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGW 156 T+++AR+++PG + + AL +L + R L+ + A +L D+ M T G Sbjct: 128 TLQMARQMYPGKRNNLDAL--CDRLGIDNSK-----RTLHGALLDAEILADVYLMMTGGQ 180 Query: 157 T 157 T Sbjct: 181 T 181 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 42/228 (18%) Query: 4 IIDTETCGLQG---------GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRIT 54 ++D ET G + I EI +V V DG ++ + LV P R I PQ M + IT Sbjct: 42 VVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTGIT 101 Query: 55 EAMVADKPWIEDVIPHYYG------SEWYVAHNASFD----RRVLPEMPGEW-----ICT 99 AMV+D P I+ V+P + VAHNA FD R + W +CT Sbjct: 102 TAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCT 161 Query: 100 MKLARRLW-----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 ++LARR+ P ++ +++A R V T P HRAL D T +L ++ Sbjct: 162 VRLARRVLSREEAPSVRLASLA----RLFAVTTQP---THRALDDARATVDVLHALIERV 214 Query: 155 G-WTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201 G AD+ G + T + R + +++ R PG +LF Sbjct: 215 GNQGVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPGV--YLFRG 257 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 26/168 (15%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMA-IHRITEAMVA 59 I+D ET GL I+EIA++ V G +V+ LV+P P + + IT A+V Sbjct: 13 IVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNALVV 72 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP----EMPGEWI-----CTMKLARRLW 107 DKP IE+V P + + VAHNA FD L ++ G I CT LA+RL+ Sbjct: 73 DKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKRLF 132 Query: 108 PGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P + N+A + N+ P HRAL D +T L I++ Sbjct: 133 PDLPSKSLVNLAYH----FNI---PYNKKHRALEDALVTYELFKKIID 173 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 26/187 (13%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSH--LVRP-----DRPISP-QAMAIHR 52 + D ET GL + GIVEI ++ V++G++ + + LVRP +R + P A +H Sbjct: 5 VFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRVHG 64 Query: 53 ITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRV-LPEMPGEWICTM 100 I+ MV P IE+V+P + G VAHN FD RR+ + P CT+ Sbjct: 65 ISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHCTV 124 Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 +L+RR +P + N+ + R L + PG HR+ D +TA + ++ TAE Sbjct: 125 QLSRRAFPKERAHNLTVLAER-LGLNFAPG-GRHRSFGDVQVTAHAYVRLLELLA-TAEP 181 Query: 161 MADITGR 167 ++G+ Sbjct: 182 QQRVSGK 188 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 22/154 (14%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI-SPQAMAIHRITEAMVA 59 +ID ET GL + I+E+ +V V D KIV+ S V P + I SP+ + I EAM+ Sbjct: 26 VIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDIISPEIRKLTGIDEAMIE 85 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107 IEDVIP + E + HN +FD L + + +++ +K++R+L Sbjct: 86 GADQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERYSDFYLSNDYVDLLKISRKLS 145 Query: 108 PGIKYSNMALYKT-RKLNVQTPPGLHHHRALYDC 140 P ++ N L +KL ++ HRA+ DC Sbjct: 146 P--EFENHKLETVLKKLGIKVD---QQHRAVSDC 174 >UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB Length = 263 Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 23/240 (9%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D E+ G+ ++++A + V G + + L D ++ +AIH IT AM+ Sbjct: 5 LYFVDVESTGVDLKNDRLIQLAFLKV-QGDKIEAFNDLCYTDIEMNDTVVAIHNITNAML 63 Query: 59 ADKPW---IEDVIPHYYG---SEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108 DK W + I G + +++AH D +L + + + T K AR L Sbjct: 64 EDKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTDKCARLLLK 123 Query: 109 GIKYSNMALYKTRKLNVQTPPG---------LHHHRALYDCYITAALLIDIMNTSGWTAE 159 + TR Q L H AL D L +++ + Sbjct: 124 EAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEELLERVEGGID 183 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + +T P ++ TFGKY+GK+ +V ++ P L W++ N+ + P+L TL+H+L+ Sbjct: 184 ALVSLTAEPMMLEKITFGKYKGKSFEEVFQKSPLDLVWMYANMAADWPDLDYTLEHWLKQ 243 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 18/144 (12%) Query: 17 VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHY---YG 73 +EI +V V DG +V+ LV P + + + + IT MV + P ++V+P Y G Sbjct: 1 MEIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLG 60 Query: 74 SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPGIKYSNMA-LYKTRKL 123 VAHN SFD L +P E +CT++LARRL PG+ ++ L + + Sbjct: 61 DGILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDI 120 Query: 124 NVQTPPGLHHHRALYDCYITAALL 147 +V+ HRAL D T+ +L Sbjct: 121 DVEG-----RHRALGDAEATSVVL 139 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 28/180 (15%) Query: 4 IIDTETCGLQ--GG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G + GG I EIA V V G++ S LV P+RPI P ++ IT MV Sbjct: 8 VVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDMVR 67 Query: 60 DKPWIED----VIPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 D+P + V+ GS +VAHNA FD R + E+ G +CT++ AR Sbjct: 68 DQPTFREITSNVLDRLRGS-IFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARAA 126 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS------GWTAEQ 160 P + ++ + TR ++ HRA D TA L ++N + WTA Q Sbjct: 127 LPQLSRRSLD-HVTRYFGIEIAA---RHRAAGDALATAHALCRMLNIASEHGVESWTALQ 182 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 69.7 bits (169), Expect = 7e-11, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 24/165 (14%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I+EI +V + + KIV+ V P PIS + I E+MV D Sbjct: 390 VFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMVKD 449 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P IE+V+P + VAHNA+FD +++ + + T++L+R L+ Sbjct: 450 APLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLYQD 509 Query: 110 I---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + K +A + KL LHHHRA+ D TA + I ++ Sbjct: 510 LKNYKLDTLAEFFEVKL-------LHHHRAVEDAKATAEIFIKML 547 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 12/120 (10%) Query: 4 IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G +GGI E+ ++ ++ G++V+ S LV P RPI P + IT+ MV+ Sbjct: 35 VFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMVSG 94 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPGIK 111 P +VIP + VAHNA FD L +P + T++LAR L PG++ Sbjct: 95 APPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPGLR 154 >UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exonuclease) n=1 Tax=Propionibacterium acnes RepID=Q6A708_PROAC Length = 236 Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 20/163 (12%) Query: 5 IDTETCGLQGGI--VEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAMVADK 61 +D ET GG+ ++A V V DG+IV+ ++ L+RP + S + +H I+ A VAD Sbjct: 72 VDFETANRMGGVSACQVAMVKVCDGQIVDRLNTLIRPPKGWDSFEFTYLHGISAADVADA 131 Query: 62 P-W--IEDVIPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109 P W I D + H+ AHNA+FD RV + +P + C+ + A+RL PG Sbjct: 132 PSWTNIADTVSHFVDGVTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFCSYRTAQRLIPG 191 Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + Y + N Q L+HHRA D A ++ ++ Sbjct: 192 LPNYKLPTVLHACAPNYQ----LNHHRADSDAEACALIVCELQ 230 >UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinetobacter RepID=B7I2S0_ACIB5 Length = 234 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 22/227 (9%) Query: 4 IIDTETCGLQGGIVEIA--SVDVIDGKIVNPMS----HLVRPDRPISPQAMAIHRITEAM 57 I+DTET L G +EIA +++ GK+ S L + PIS AMA+H I E+ Sbjct: 11 ILDTETHTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAVHHILESD 70 Query: 58 VADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGIK 111 + ++P + +P + + + HN +D + + ICT+ LAR+ WP + Sbjct: 71 LENQPHYKTFKLPD--TTTYIIGHNIDYDIAAIARCGVDVSHIKPICTLALARKTWPDAE 128 Query: 112 YSNMA--LYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM-NTSGWTAEQMADITGR 167 N++ +Y + + + L HRA D +TA +L+ I+ + + E++ ++ Sbjct: 129 AHNISALIYMISQGSSKARELLKGAHRADADIILTANILMHIVYHLNIHDIEELYRVSEE 188 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 + TT FGK++G A +AE Y++WL D + LR L+ Sbjct: 189 ARIPTTINFGKHKGTA---IAELPKDYIQWLLRQ-DELDVYLRKALE 231 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 21/164 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G + I+EI ++ +G+ V + LV P++ IS IT +MV + Sbjct: 26 VVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMVDN 85 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 P I+ + + ++ +VAHN FD R ++ W+CT +LARRL P Sbjct: 86 APVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRLLP 145 Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + N+ L K + V+ + HRA DC T LL +++ Sbjct: 146 TQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELI 184 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 35/205 (17%) Query: 4 IIDTETCGLQGG---------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRI 53 I DTET G+ I+EI V++ID H + P++P+ PQA +H I Sbjct: 7 IFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQAFKVHGI 66 Query: 54 TEAMVADKPWIEDVIPHYYG----SEWYVAHNASFDRRVLP---EMPG---------EWI 97 ++ +ADKP+ +DV+P + ++ VAHN +FDR+ + ++ G + Sbjct: 67 SDEFLADKPFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCDYRLGDKFTLV 126 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 ++K+AR + G + + AL K + V G H AL D + A + + + T G + Sbjct: 127 DSLKIAREKFAGARNNLDALCK--RFGVDN-TGRELHGALLDAQLLAEVYLKL--TGGQS 181 Query: 158 ----AEQMADITGRPSLMTTFTFGK 178 A M R T TF K Sbjct: 182 DLSFAHPMMASARRAEQKTAATFAK 206 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 22/166 (13%) Query: 4 IIDTETCG---LQGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 IID ET G +G I+++ V + +GKIV+ S P+R I P + ITE MVA Sbjct: 7 IIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQMVA 66 Query: 60 DKP-WIEDV--IPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107 D P + E+ + ++VAHN SFD + LP G I T++LAR ++ Sbjct: 67 DAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARIVF 126 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P + + L K ++ P H+A D +TA L I ++N Sbjct: 127 PTAESYKLGDLAKQLHIDHDQP-----HQADSDAEVTAKLFIALLN 167 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 21/164 (12%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL I+E+ ++ + GK S L+ P PI +IH IT+ MVA + Sbjct: 15 LDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMVAGQ 74 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRR----VLPEMPGEWIC-----TMKLARRLWPG 109 P +E+VI + G V HNA FD VL ++ +W T+ L+R +PG Sbjct: 75 PRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVAFPG 134 Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++ YS +L + HHRAL DC+ T L + Sbjct: 135 LRSYSLESLSDFFEFKEGV-----HHRALCDCWYTQQLFTRFLE 173 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 67.8 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 24/167 (14%) Query: 4 IIDTETCG-LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G L+GG I EI V V GK+++ + LV P R I ++ I+++MV++ Sbjct: 569 VVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSMVSN 628 Query: 61 KPWIEDVIPHYYGS---EWYVAHNASFD----------RRVLPEMPGEWICTMKLARRLW 107 P D++ +VAHN +FD +V +MP +CT+ +R+ + Sbjct: 629 APVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPK--LCTVVESRKAF 686 Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 G+K YS L K LN+ + HHRAL D TA LL+ I + Sbjct: 687 AGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQKS 728 >UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPW2_HAHCH Length = 192 Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%) Query: 4 IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ++DTET GL Q ++EI+ +D + G ++ LVRP P+ P+A IH +T +A+K Sbjct: 19 VLDTETTGLDDQAEVIEISVMD-MRGNVL--FDQLVRPLNPVPPEAAEIHGVTNEKLANK 75 Query: 62 PWIEDVIPHYY---GSEWYVAHNASFDRRV---------LPEMPGEWICTMKL-AR-RLW 107 P DV + G VA+NA FDRR+ LP + W C M AR R Sbjct: 76 PNFPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPMIEANWQCAMNAYARYRKE 135 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALL 147 P K K Q ++ HRA+ DC+ T ++ Sbjct: 136 PDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTVEVI 176 >UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C533_SPHTD Length = 197 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 18/168 (10%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP- 62 +DTET GL G EI + V+D + + LVRP RPI P+ AIH IT+ MVA P Sbjct: 26 FLDTETTGLDGQ-AEIVEIAVVDAQGTVLLDTLVRPLRPIPPEVQAIHGITDRMVAGAPR 84 Query: 63 WIE---DVIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWPGI 110 W E +++ + V +NA+FDRRV LP EW C M L + G Sbjct: 85 WPEVHAELVRLFRERPRAVVYNAAFDRRVIAQTAQQHCLPPPTAEWHCAM-LRYAAYAGE 143 Query: 111 KYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTSG 155 ++ Y+ +L+ G+ HRAL D + ++ + G Sbjct: 144 RHPVTGKYRWHRLDRAAAALGIPRPTHRALGDALVCRGVVAAMAGLGG 191 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 52/242 (21%) Query: 4 IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54 ++DTET G+ Q G I+EI +V+VI+ ++ H+ ++PDR + P+A +H I Sbjct: 10 VLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGIA 69 Query: 55 EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD-----------RRVLPEMPGEWIC- 98 + + DKP DV+ + G+E V HNASFD +R +P+ C Sbjct: 70 DEFLLDKPVFADVVDEFLDYIRGAEL-VIHNASFDIGFMDYEFGLLKRDIPKT--NTFCK 126 Query: 99 ---TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 ++ LAR+++PG + S AL +++ + R L+ + A +L Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEID-------NSKRTLHGALLDAQIL-------- 171 Query: 156 WTAEQMADITGRPSLMTTFTFG---KYRGKAVSDVAERDPGYLRWLFNNLDSMSP-ELRL 211 AE +TG + MT G + +G+A R LR +F + + ++ E RL Sbjct: 172 --AEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRL 229 Query: 212 TL 213 L Sbjct: 230 DL 231 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 33/178 (18%) Query: 4 IIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRIT 54 ++D ET G + I EI +V V G ++ + LV P I PQ + + IT Sbjct: 45 VVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGIT 104 Query: 55 EAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPG-EWICTMKL 102 AMV + P I+ V+P ++ G VAHNA FD RR P + +CTM+L Sbjct: 105 TAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRL 164 Query: 103 ARRLW-----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 ARR+ P ++ + +A R V + P HRAL D T +L ++ G Sbjct: 165 ARRVLSRDEAPSVRLAALA----RLFAVASNP---THRALDDARATVDVLHALIERVG 215 >UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit family n=28 Tax=Clostridium RepID=A7GA16_CLOBL Length = 309 Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 18/145 (12%) Query: 19 IASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKPWIEDV---IPHYYGS 74 I V V DG+IV + +L++P + P + IH I MV D+ + + I Y+ + Sbjct: 21 IGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWGKIKGYFNN 80 Query: 75 EWYVAHNASFDRRVLP--------EMPG-EWICTMKLARRLWPGIKYSNMALYKTRKLNV 125 +AHNASFD VL +MP E+ICTMKL++ YSN+ + +N Sbjct: 81 NLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKNF-----YSNIDNARLNTVNN 135 Query: 126 QTPPGLHHHRALYDCYITAALLIDI 150 HH AL D + +LI+I Sbjct: 136 FLGYKFKHHDALADAMACSNILINI 160 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 66.6 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 26/163 (15%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V + +GK+V+ S V P+R I + + + I + MV D Sbjct: 415 VFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVKD 474 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWPG 109 P IE+V+P + VAHNA+FD + + ++ + T+ L + L+P Sbjct: 475 APKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLYPE 534 Query: 110 IKYSNMALYKTRKLNVQTP----PGLHHHRALYDCYITAALLI 148 + K KLNV P L+HHRA+ D T +L+ Sbjct: 535 L--------KRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILL 569 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 16/158 (10%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL G ++E+A+V + +GK+V + L+R + I P A +H I M Sbjct: 5 LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 + P EDV + G VAHNA FD + + ICT+++ARR Sbjct: 65 LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 +P + + R L P HRAL D + A Sbjct: 125 FPELASHRLEAL-ARHLLGSIPEDCRLHRALGDARLAA 161 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 66.2 bits (160), Expect = 7e-10, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 18/158 (11%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V + DG+IV+ S V P I + + IT+ MV Sbjct: 437 VFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVNG 496 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFD----RRVLPEM----PGEWICTMKLARRLWPG 109 +P I++V+P + G+ VAHNA+FD ++ L +M + T+ LAR L+P Sbjct: 497 QPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYPD 556 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 +K + L + L + +HHRA+ D TA +L Sbjct: 557 LKKVKLNLV-AKHLGISLE---NHHRAVDDAKATAEIL 590 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 16/163 (9%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL + IVE+A+ V++G+I++ V P RPI + IH + +A V Sbjct: 275 VFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDADV 334 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRLWP 108 A P IE VIP ++ S VAHNA FD +L + + C+ L L Sbjct: 335 AQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSALVF 394 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 GI + +L+++ P H H A D TA LI ++ Sbjct: 395 GISADHSLDALCSRLSIEI-PARHRHTAKGDARATAEALIRLL 436 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 21/165 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +ID E G + ++++A+V V G I S LV P I + + IT AM+ Sbjct: 21 VIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAMLVG 80 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108 +P IE+V+P + G V H D + + + ++ +CT+KLAR+++P Sbjct: 81 QPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKVFP 140 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 G+ KYS + + HRAL D +TA + I I+ Sbjct: 141 GLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILE 180 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 22/196 (11%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G+ ++EI++V V +GKIV+ S LV P RPI A +++ I++ MV + Sbjct: 19 LYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMVEN 78 Query: 61 KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107 E V+P + G + HN A FD + L + ++I T+ +A+ + Sbjct: 79 ARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKLCF 138 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD--IT 165 P K+ ++ + T HRAL DC + + + SG T+ + + I Sbjct: 139 PEWKHRKLSDL-AEHYGISTKGA---HRALADCRMNQQVFELMAKESGGTSAKQTEEKIC 194 Query: 166 GRPSLMTTFTFGKYRG 181 R L G++ G Sbjct: 195 PRCGLALKKRNGRFGG 210 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 35/235 (14%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL+ I+EIA+ + +I++ + LV P+ I P I+ I MV D Sbjct: 133 VVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMVKD 192 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPG 109 P I++V+P ++ G VAHNA FD + L + I T+ ++R+L+ Sbjct: 193 CPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLFSE 252 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169 I+ + K LN+ HRAL DCY+ + ++ +T + +A+I Sbjct: 253 IENHKLGTIK-EYLNIDVQDS---HRALPDCYVCGQIYLE-YSTKEKNKKALANIKLHSD 307 Query: 170 LMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFN----NLDSMSPELRLTLK 214 + G + + S V E +D Y+R+ F ++ + LRL LK Sbjct: 308 I------GLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 20/177 (11%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G I+E+ +V G+IV+ VRP +P+ P+ + IT M+ Sbjct: 456 VLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDMLEG 515 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWP 108 P + + ++ G VAHNA FD L E + T+ LAR + P Sbjct: 516 APEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAVLP 575 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 ++ ++A T++L V P + HHRA D A +L+ ++ + E +AD+ Sbjct: 576 HMRSHSLAAL-TKELQV---PLVDHHRADADAKTAAMVLMKLLERA-EGVETVADLN 627 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET GL + I+EI ++ + +++ S V+P++ +S ++ ITE M Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476 Query: 58 VADKPWIEDVIPHYYGSEW---YVAHNASFD-----RRVLPEMPGEW----ICTMKLARR 105 +++ I++V+P + VAHNASFD V G+W I T+ LA+ Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 L+ YS + K KL HHRA D +TA +L Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVL 573 >UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM Length = 260 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 35/182 (19%) Query: 4 IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54 ++DTET G+ Q G I+EI +V++I+ + HL ++PDR + P+A+ +H IT Sbjct: 12 LLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGIT 71 Query: 55 EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPGEWIC---- 98 + M+ DKP +V + G+E + HNA FD R+ ++ IC Sbjct: 72 DEMLEDKPVFTEVAQEFIDFIKGAELLI-HNAPFDVGFMDYEFRKHHIDVKTADICSVTD 130 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGW 156 T++LAR+++PG + S AL +L + R L+ + A +L D+ + T G Sbjct: 131 TLQLARQMYPGKRNSLDAL--CDRLGIDNTK-----RVLHGALLDAEILGDVYLVMTGGQ 183 Query: 157 TA 158 T+ Sbjct: 184 TS 185 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 24/164 (14%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V V +GKI++ S V P+ PI + + I + MV D Sbjct: 411 VFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMVID 470 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P IE+++P + VAHN+ FD +R E I T+ ++R L G Sbjct: 471 APKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLIIG 530 Query: 110 IKYSNMALYKTRKLNVQTPPGL---HHHRALYDCYITAALLIDI 150 + YK NV G+ HHHRA+ D TA + + + Sbjct: 531 -----LGRYKLD--NVAKALGIVLDHHHRAVDDAECTALIFLKL 567 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 9/95 (9%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GLQ +V I++V + GK+ N LV P R I ++ A HRI + M Sbjct: 643 VFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIEDHM 702 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89 VAD P + +V P Y G VAHNA+FD++ L Sbjct: 703 VADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCL 737 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL I+EIA+V + G I LV P RPI P + I++AMV + Sbjct: 8 VLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMVRE 67 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE-W----ICTMKLARRLWPGIKY 112 P + +V+P + V HN +FD L + G W + T+ L+R L+P + Sbjct: 68 APPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCLA- 126 Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 S+ Y ++ L ++ HHRAL D TA LL Sbjct: 127 SHRLDYMSKYLTLE---ATGHHRALDDVLTTARLL 158 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG I+++ + +++GK++ S LV P+RP++P++ IH IT M Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITSEM 640 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89 + +P I+ V+P ++ +AHNA+FD R L Sbjct: 641 LRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFL 675 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 21/166 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL + I+EI +V V GK+++ S V+P I + + IT MV+ Sbjct: 387 VFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMVSR 446 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDR---RVLPEMPGEW------ICTMKLARRLWP 108 P IE VI + VAHNA FD +V + G+ + T+ L+R L P Sbjct: 447 APDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRALLP 506 Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + SN L R LNV+ +HHRA+ D T+ + I+ ++ Sbjct: 507 DL--SNHKLNTLARHLNVRLD---NHHRAVEDARATSEIFINFLSN 547 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 22/165 (13%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL Q I EI +V V +G+IV+ S V P I + + IT+ MV D Sbjct: 424 VFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMVKD 483 Query: 61 KPWIEDVIPHYY----GSEWYVAHNASFDRRVLPE---MPGE-----WICTMKLARRLWP 108 P +E V+ + GS VAHNA+FD + + + GE +I T++L R+++P Sbjct: 484 APPVEQVLNEFMEFIQGSV-LVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMFP 542 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + +Y + K K+ ++ +HHRA+ D TA + + +N Sbjct: 543 ELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCIN 582 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 26/173 (15%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG +V +A V +++G+I+ L+ P R I + AIH IT+AM Sbjct: 508 VFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITDAM 567 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 VA+ P E V+P + G VAHNA+FD + L G + TM L+R++ Sbjct: 568 VAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSRQI 627 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGL-HHHRALYDCYITAAL---LIDIMNTSG 155 + + L + GL H A+ D +TAA+ L+D++ T G Sbjct: 628 -----QGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDMLETQG 675 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 25/183 (13%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58 ++DTET G ++E+ +++ D H V P+R I P A+ +H IT+ V Sbjct: 6 VLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDKV 65 Query: 59 ADKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP--------EMPGE--WICTMKLARR 105 D P I D + + G +AHNA FDR + + GE WI T+KLA+ Sbjct: 66 KDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQA 125 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 +PG+ S AL K K+++ R L+ I A LL ++ E++ D++ Sbjct: 126 RFPGMPNSLDALCKRFKVSLV-------ERTLHGALIDARLLAEVYLELRGGKERVLDLS 178 Query: 166 GRP 168 P Sbjct: 179 SAP 181 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 17/156 (10%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAMVA 59 + DTET GL IV+IA + + G++ LV P RPI P + A+H IT+AMVA Sbjct: 455 VFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMVA 514 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFD----RRVLPEMPGEW----ICTMKLARRLWP 108 P + + H+ VAHNA FD RR +PE + + T+ L+ LW Sbjct: 515 GAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW- 573 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 G + T +L + PP H A+ D TA Sbjct: 574 GQSAPHSLDALTERLGIVIPPE-ARHTAMGDARATA 608 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 20/184 (10%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 IID ET G I EI S+ DG+ IV+ + LV P+ I A+ I AMVAD P Sbjct: 9 IIDVETTGRSNKITEI-SIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADAP 67 Query: 63 WIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGIK 111 ++ +VAHN +FD V+ + + +CT++L+R L PG K Sbjct: 68 TFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGFK 127 Query: 112 -YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170 YS L K+ LN+ HRA D T +L ++ T AE R S Sbjct: 128 SYSLGKLCKS--LNIHISD---RHRARGDAAAT-VILFQLLLTKDAAAETFQKFLKRESK 181 Query: 171 MTTF 174 T Sbjct: 182 EATL 185 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 18/158 (11%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G Q + EI +V + +G+I++ L+ P+R I P + I+ AMV D Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAMVRD 606 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLP------EMPGEW--ICTMKLARRLWPG 109 P D+ + +VAHN +FD L E P + +CT+ RR +PG Sbjct: 607 APRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRHFPG 666 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + + +R+ ++ +HHRAL D A LL Sbjct: 667 LAAYGLGPL-SREFGIELK---NHHRALSDAMAAAELL 700 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 21/193 (10%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G GI EIA + + DG K++ L+ P++ I + I +MV+ Sbjct: 5 IVDIETTGGAASTCGITEIA-ILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSMVS 63 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWP 108 D P E++ + +VAH+ +FD + E + +CT++LAR++ P Sbjct: 64 DAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKIIP 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ-MADITGR 167 G+ ++ R Q P L HRA+ D TA L ++ T Q + +G Sbjct: 124 GLSSYSLG----RICETQKIPILARHRAMGDARATAILFDQMLKKDSQTVFQALKKNSGE 179 Query: 168 PSLMTTFTFGKYR 180 L F KYR Sbjct: 180 AFLPPNFPITKYR 192 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 64.3 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I+E+A+V + G ++ + P P+S + + IT+ MV Sbjct: 429 VFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMVRG 488 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 E+V+ + VAHNA+FD R +PE I T++LAR L+P Sbjct: 489 SKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYP 548 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 K + + ++K V HHRA+YD T L Sbjct: 549 QFKRFGLGVL-SKKFGVSLE---QHHRAIYDAEATGHL 582 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58 ++DTET G ++E+ ++++D H V P+R I A+ +H IT+ V Sbjct: 6 VLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDKV 65 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE----------WICTMKLARR 105 D P ++ + G +AHNA FDR + G WI T++LA++ Sbjct: 66 KDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQK 125 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 +PG+ S AL K K+++ R L+ I A LL ++ E++ D++ Sbjct: 126 RFPGMANSLDALCKRYKISLVD-------RTLHGALIDARLLAEVYLELKGGKERVLDLS 178 Query: 166 GR 167 R Sbjct: 179 SR 180 >UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Thermobifida fusca YX RepID=Q47RH7_THEFY Length = 210 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 16/123 (13%) Query: 5 IDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI---SPQAMAIHRITEAMVAD 60 ID ET QG + + V V DG+IV+ + LVRP P+ +A+H IT VAD Sbjct: 8 IDFETANRNQGSVCAVGLVRVTDGRIVDRYTTLVRPPAPVDHFEQDNIAVHGITPEHVAD 67 Query: 61 KP-W--IEDVIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108 P W + I + +VAHNA FD V LPE + C++ +ARR WP Sbjct: 68 APAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSLHYACSLDIARRTWP 127 Query: 109 GIK 111 ++ Sbjct: 128 ALR 130 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 24/159 (15%) Query: 4 IIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + DTET GL G+ EI +V V +G++V V+P +PI+P+ + IT MVAD Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMVAD 458 Query: 61 KPWIEDVIP---HYYGSEWYVAHNA-SFDRRVLPEMPGE--------WICTMKLARRLWP 108 P ++ + + VAHNA +FD R L +I T+ +A+ ++P Sbjct: 459 APGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAMYP 518 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 G+ Y + K +L P HRA C +AAL Sbjct: 519 GLHNYKQGTINKHLEL-----PSYEAHRA---CEDSAAL 549 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 19/151 (12%) Query: 4 IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D ET G + I EI V+V G + S LV P +PI P + I++AMVA+ Sbjct: 8 IVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMVAE 66 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P ++ P + +AHNA FD RR+ + +CT+KL+RRL+P Sbjct: 67 APPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLYPQ 126 Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYD 139 K+S +L ++V PPG+ HRAL D Sbjct: 127 HAKHSLDSLIARHGIDV--PPGM-RHRALGD 154 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 63.2 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 41/184 (22%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G + I+EIA+ V G I L+ P+ +S I IT+ MV + Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEMVEN 473 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLW- 107 + IE+V+P + VAHNASFD + E P I T+ +AR + Sbjct: 474 EKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARYFYN 533 Query: 108 -------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P +K N+ AL K K+N++ HHRA+YD Y TA + Sbjct: 534 NTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATAEVF 588 Query: 148 IDIM 151 ++++ Sbjct: 589 LNML 592 >UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginosa RepID=Q9APT6_PSEAE Length = 204 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%) Query: 4 IIDTETCG-LQGGIVE--IASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D E G +VE IAS V++G+ P S L++P PI+ QA +H I + V Sbjct: 15 IVDVEGNGHTPPDLVELAIASFPVVEGE--EPSSWLIKPPNPITWQAKRVHGIGNSSVKG 72 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGIK- 111 P E++ + +W+VAHNAS D V+ +W I T+KLAR ++P + Sbjct: 73 SPVWEELRGDVEQQLQGKWFVAHNASIDYEVMKRHLPDWAPVGVIDTLKLARHVYPDAES 132 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +S AL L+ + L HRA D +TA LL ++ S Sbjct: 133 HSLSALLAMTGLDSEVSGEL--HRAGEDARVTALLLSRLLKDS 173 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 21/160 (13%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I D ET GL I+E+A+V + DG++V + P+RP+S + IT MV Sbjct: 427 IFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMVHG 486 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 +V+ + G HN SFD R + + I T++L+R L P Sbjct: 487 AKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRMLHP 546 Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 K + +L K K+N++ HHHRA D T LL Sbjct: 547 EYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLL 581 >UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WH29_KINRD Length = 203 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 ++DTE+ L G +VEIA DV + S LVRP P+ P A A+H I + + D P Sbjct: 51 LLDTESTALDGQLVEIAITDVHGAPL---FSSLVRPTTPVDPGARAVHGIGDEELQDAPD 107 Query: 64 IEDVIPHYYGS---EWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPG-----IKYSNM 115 + V P + +A+NA FDR +L GE I L+ W ++ Sbjct: 108 LLMVAPQLRAALAGRHVIAYNARFDRGLL-RREGERIGVDLLSSTRWGCGMHCYTRFRGR 166 Query: 116 ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + R L PG HRA+ DC A +L +I Sbjct: 167 VDSRGRHLRASRLPGA-RHRAVGDCRSLAEVLQEI 200 >UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJH8_9BACT Length = 179 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 28/154 (18%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVN---PMSHLVRPDRPISPQAMAIHRIT 54 + DTET G+ ++EI +V V G +++ L+ P PI A ++H I+ Sbjct: 11 FTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHGIS 70 Query: 55 EAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKL 102 AMVADKP I+DV+P ++ + AHNA FD + E + T+KL Sbjct: 71 TAMVADKPEIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKIVDTVKL 130 Query: 103 ARRLWPGIK---------YSNMALYKTRKLNVQT 127 A+ G+K Y +M + +R L Q+ Sbjct: 131 AKSAHSGLKSYSLGNLIHYFSMDIPPSRHLQTQS 164 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%) Query: 5 IDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 +D ET +G + I V DG IV+ L+ P+ + IH IT V D P Sbjct: 8 LDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLDSPT 67 Query: 64 IEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLWPGIK 111 +V I + G + VAH A FD L ++ E+IC+ +LA+ PG Sbjct: 68 FPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALPG-- 125 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 YK ++L L HH AL D + +L +++T+ ++ Sbjct: 126 ---QLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS 168 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 37/195 (18%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++DTET G+ + G ++EI +V+V++ ++ N + P+R I P+A+ +H IT V Sbjct: 5 VLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNERV 64 Query: 59 ADKPWIEDVIPHYY----GSEWYVAHNASF-------------DRRVLPEM-PGEWIC-- 98 AD+P D+ ++ G+E V HNA+F D+R P + P C Sbjct: 65 ADEPVFADIADAFWEYIRGAEL-VIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123 Query: 99 --TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTS 154 T+ +AR+L PG + + AL K ++ + R L+ + A +L D+ T Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGID-------NGRRVLHGALLDAEILSDVYLTMTG 176 Query: 155 GWTAEQMADITGRPS 169 G TA +A I R Sbjct: 177 GQTALSLAGIEERAG 191 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 20/158 (12%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +ID ET G I+++A+V + ++V+ V P+RPI + ++ IT V+D Sbjct: 12 VIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSD 71 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108 P IE+V+P + + VAHNASFD R LPE + I T+ LA++ Sbjct: 72 APTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMK 131 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 + K R L ++ L H A DC AA+ Sbjct: 132 HATNHKLETLK-RMLGIR----LSSHNAFDDCITCAAV 164 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 62.4 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET G++ I++I +V +++G+++ LV P+R I P+ + IH I++ M Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISDDM 606 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---PEMPGEWICTMKLARRLWPGIK 111 V +P IE V+P + VAHNA+FD R L E G L L G+ Sbjct: 607 VRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSGVL 666 Query: 112 YSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM 151 + N ++ + + G+ H AL D TA + + ++ Sbjct: 667 HPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKML 707 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 20/161 (12%) Query: 2 LRIIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL QG +EI +V + G+I S L+ P I+ I+ M Sbjct: 40 LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 +A +V+ + G VAHNA+FD+R L + PG++ C++ LARRL Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159 Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 +P I + L + ++L P HRAL D +T L Sbjct: 160 YPEAINHQLATLVRHKQL----PTDGTFHRALADAEMTGHL 196 >UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZU3_9BACT Length = 204 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 23/167 (13%) Query: 5 IDTETCGLQGGIVEIASVDVIDGK-IVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62 ID ET + V + +I+ + IV S L+RP + P + IH I+ V DKP Sbjct: 6 IDFETANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKDVEDKP 65 Query: 63 WI----EDVIPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG 109 +++ P GS + VAHNASFD VL P P + CT+ +A+R+WPG Sbjct: 66 EFYQLWDEIFPFLEGS-YLVAHNASFDMSVLCCILDVYKIPYPPLNYFCTLAIAKRVWPG 124 Query: 110 IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 + AL K +R L ++ HH A D A +L+ N G Sbjct: 125 L--LGYALNKISRYLEIE----FKHHDAEEDAVACAKILLHAYNELG 165 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G I EI + + GKI++ V P++PI + + + IT+ MV D Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMVRD 485 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 I+ V P ++ VAHNA FD L + ++ T+ LA+ L+P Sbjct: 486 AETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELFPD 545 Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA---LLIDIMNTSGWTAEQMADI 164 K Y + K + V+ HRAL D T +++D++ G E + DI Sbjct: 546 YKTYKLGRIAKNLGIKVEVA-----HRALDDVGTTVKVFNIMVDMLKERG--VETLEDI 597 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 24/162 (14%) Query: 4 IIDTET---CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET C I EI +V VID K+V+ S L+ P+R + + I+ MV D Sbjct: 606 VVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMVED 665 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARRLW 107 P +VI + +VAHN +FD MP +CT++ R+ + Sbjct: 666 APLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPK--LCTVREMRKYY 723 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 PG YS L K L++ +HHRAL D A LLI Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI 760 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 19/160 (11%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D ET GL + I+EI ++ V G+IV+ LVRP+RPI + + +++A VA Sbjct: 5 IVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVAG 64 Query: 61 KPWIEDVIPHYYGSEWYV---AHNASFDR-----RV----LPEMPGEWICTMKLARRLWP 108 P + + + G + H+ F+R RV LP PG+ +CT+ LAR L P Sbjct: 65 APSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILAP 124 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 + S+ Y R+L ++ HRAL D LL+ Sbjct: 125 RL-MSHRLEYLARRLRLRAEVS---HRALADARTAHQLLM 160 >UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M082_ACIFD Length = 475 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 31/173 (17%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D ET G G + E+A + V +G+ + + LV DRPI P +A+ I+ +VAD Sbjct: 20 ILDVETTGAASGADELTEVAMMVVQEGRALAHLQSLVHTDRPIPPAIVALTGISNELVAD 79 Query: 61 KPWIEDVI---PHYYGSEWYVAHNASFDRR-----------VLPEMPGEWICTMKLARRL 106 P VI V HN FDR LPE+P + T+ L+R L Sbjct: 80 APSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGITLPEVP--VLDTLTLSRVL 137 Query: 107 W----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P + + +A Y +Q PP HRA+ D T ALL ++ +G Sbjct: 138 LDGEVPNHRLATLAHY------LQLPP--PSHRAMADVVTTVALLHRLIERAG 182 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M IID ET G I+EIA KI + L+ P+R I ++ I M Sbjct: 2 MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE------MPGEW--ICTMKLARRL 106 VAD P DV I + +VAHN +FD + + MP +CT++L+R++ Sbjct: 62 VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQM 161 +PG+ YS L + ++VQ + HRA D T LL ++ +T G+ + + Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSL 174 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%) Query: 4 IIDTETCGLQGGIVEIASVDVI---DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET G I + + G+ V LV P ISP + I+ AMVAD Sbjct: 15 FLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMVAD 74 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P ED+ + +VAHNA FD RR+ + +CT+KL+RRL+P Sbjct: 75 APLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLYPE 134 Query: 110 IKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA--DITG 166 + NM AL + L + HRA+ D ++ G + A ++ Sbjct: 135 FRRHNMDALIERHGLQ-----QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICELLQ 189 Query: 167 RPSL 170 RPS+ Sbjct: 190 RPSI 193 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 19/162 (11%) Query: 4 IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +ID ET G QG + EI + V + +IV+ S L+ P+ I A+ IT+ MV D Sbjct: 10 VIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVTDA 69 Query: 62 PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110 P DV I +VAHN +FD L + + +CT++L+R+L PG+ Sbjct: 70 PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIPGL 129 Query: 111 -KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 YS L ++ +++ L HRA D T L + ++ Sbjct: 130 PSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLL 166 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57 + D E GL +GG I+ IA V V++G+++ ++ P RPI P ++ H IT+ Sbjct: 511 VFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITDDD 570 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89 V DKP IE V+P + G VAHNA+FD + + Sbjct: 571 VQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFI 605 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 27/186 (14%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 I+DTET GL +GG IVEI ++++++ + H + P+R + +A IH I+ + Sbjct: 8 ILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEFL 67 Query: 59 ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMKL 102 DKP I D + V HNA FD + L I T+ + Sbjct: 68 KDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLVM 127 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQM 161 AR ++PG KYS AL K K++ G H AL D + A + +++ T G +A +M Sbjct: 128 ARSMFPGSKYSLDALCKRFKVD---NSGRQLHGALKDAALLAEVYVEL--TGGRQSAFKM 182 Query: 162 ADITGR 167 D + Sbjct: 183 LDKAAK 188 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 20/160 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G + I+EI +V V+ G+I S V P+ PI + + I + MV D Sbjct: 477 VFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMVID 536 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P IE ++P + G VAHNA FD R E I T+ LAR L P Sbjct: 537 APKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILLPQ 596 Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 + ++ + K ++++ +HHRA+ D TA + + Sbjct: 597 LNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFV 631 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 29/202 (14%) Query: 4 IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G + ++EI++V V GK+V S LV P RPI A ++ I++ MVA+ Sbjct: 19 LFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMVAN 78 Query: 61 KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107 +P V+P + G + V HN +FD + L ++ +++ T+++A+ + Sbjct: 79 EPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKLCF 138 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYIT-------AALLIDIMNTSGWTAE 159 P ++ ++ L + ++ + HRAL DC + A L + + E Sbjct: 139 PEWRHRRLSDLAEHYGISTRGA-----HRALTDCKMNQQVFEYLAKELEKMPAAKKQSKE 193 Query: 160 QMADITGRPSLMTTFTFGKYRG 181 ++ G P FG++ G Sbjct: 194 KICPECGLPMKKRNGRFGEFWG 215 >UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT Length = 275 Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 ++DTET GL G EI + ++D + LVRP RPI +A AIH+IT+AMVA P Sbjct: 88 VLDTETTGL-GDDAEICEITILDVTGAPILDTLVRPTRPIPVEATAIHKITDAMVASAPS 146 Query: 64 IEDVIPHYYGS---EWYVAHNASFDRRVL 89 +V Y + VA+N +FD R+L Sbjct: 147 WPEVAEQYAAAVAGRTVVAYNVAFDARLL 175 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 20/160 (12%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V + +GKI++ M V P PI + + I ++MV D Sbjct: 520 VFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVMD 579 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPG 109 IE+V+P + VAHNA FD + I T+ L+R L P Sbjct: 580 AKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLPR 639 Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 + ++ + K K+ + LHHHRA+ D TA + + Sbjct: 640 LNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYL 674 >UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YMP7_NOCDA Length = 335 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 28/180 (15%) Query: 5 IDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI---SPQAMAIHRITEAMVAD 60 ID ET +G + V V DG +V+ + L+RP R + S +A+H IT A VAD Sbjct: 8 IDFETANHDRGSACAVGLVRVRDGAVVDRYTTLIRPPRQVDFFSRHNIAVHGITAADVAD 67 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLWP 108 P E I + VAHNA+FD VL + G E+ CT+ L+RR W Sbjct: 68 APSWEQAHARIVEFADGGPLVAHNAAFDMGVLRQACGHTGLSHPAWEYACTLALSRRTWS 127 Query: 109 GI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 G+ K + + ++ HHHRA D A ++I M G +AD+T Sbjct: 128 GLPDHKLPTVCAHIGHRVT-------HHHRADADAEAAARIVIAAMERYG--TPSLADLT 178 >UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA98_MICLC Length = 381 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%) Query: 5 IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP----DRPISPQAMAIHRITEAMVA 59 ID ET G +G + +V V DG +V+ L+RP DR P+ + IH ITE V Sbjct: 16 IDFETANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDR-FDPRNVRIHGITEDRVL 74 Query: 60 DKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP--------EMPG-EWICTMKLARRLW 107 D P + D + + G++ AHNA FD V+ ++PG E++CT+ LARR++ Sbjct: 75 DAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEFVCTLVLARRVY 134 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMAD 163 Y+ + + PG HH AL D AA+L+DI + A+ + Sbjct: 135 DLPSYALPSAAREAGFT----PG-RHHDALADAEACAAILVDIARRVLGAQPADADVLPG 189 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 +T P+ + +G +VS +A R G Sbjct: 190 LTEAPAGRGVDRLMRAQGLSVSVLAPRAAG 219 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 33/173 (19%) Query: 5 IDTETCGLQGG----IVEIASVDVID----GKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 DTET GL I+EI +V++I+ GK L+ P +S + I IT+ Sbjct: 10 FDTETTGLNPNEGDRIIEIGAVEMINHIPTGKT---FRRLINPGMAVSEATIRITGITDD 66 Query: 57 MVADKPWIE-----DVIPHYYGSEWYVAHNASFD------------RRVLPEMPGEWICT 99 + DKP E D + G VAHNASFD R ++PE W+ T Sbjct: 67 HLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE--DRWVDT 124 Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 +++AR+ +PG S AL K +++++ H AL D + A++ ++++ Sbjct: 125 VQMARKRYPGAPASLDALCKRFDISLES---RTFHGALLDSQLLASVYLELLG 174 >UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9E4_STRRD Length = 189 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 15/123 (12%) Query: 4 IIDTETCGLQGG----IVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EIA V + DG V+ LV P R A+ +H ITEAMV Sbjct: 1 MVDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRRGTG--AVHVHGITEAMV 58 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110 P IE+V+ + VAHN SFD R L +PG E +CT +LA L PG Sbjct: 59 EGAPVIEEVLDEVWQRIAGRVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAPDLIPGG 118 Query: 111 KYS 113 K++ Sbjct: 119 KWT 121 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG IV IA V +++G+I++ S +V P RPI +++ H IT+ M Sbjct: 221 VFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITDDM 280 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89 V DKP V+P Y VAHNA+FD + L Sbjct: 281 VVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFL 315 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 32/191 (16%) Query: 4 IIDTETCG--LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G +GG I EI +V V G+++ LV P I + I+ +MVA Sbjct: 32 VVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSMVA 91 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFD---RRVLPEMPG------EWICTMKLARRL- 106 D P +E +P + VAHNA FD R E G E + T +LARR+ Sbjct: 92 DAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARRVV 151 Query: 107 ----WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TA 158 P K S++A + T P +HRAL D T +L +M G T Sbjct: 152 SRDDAPNCKLSSLA----KAFGSTTTP---NHRALSDARATVDVLHGLMERLGGVGVHTL 204 Query: 159 EQMADITGRPS 169 E++ + R S Sbjct: 205 EELQTFSSRVS 215 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 60.8 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 20/159 (12%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G I EI V ++ GK V+ L+ P R I + I++ MVAD Sbjct: 545 VVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMVAD 604 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P +V H + +VAHN +FD R+ +CT++ RR PG Sbjct: 605 APLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTHPG 664 Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + YS L K ++++ HHRAL D A LL Sbjct: 665 LSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELL 698 >UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria RepID=B6IRC5_RHOCS Length = 212 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 21/165 (12%) Query: 2 LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVA 59 L ID ET Q I V +G++V +L+RP + +P +AIH I V Sbjct: 7 LLAIDFETANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVV 66 Query: 60 DKPWIEDV----IPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106 D P D+ P G+ +AHNASFD VL M G ++CT+ ARR Sbjct: 67 DAPEFPDIWDAMRPELEGA-VLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAARRA 125 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 WP ++ + + R+ ++ L HHRA D AA+ + M Sbjct: 126 WPDLEKHRLN-HLARQFGIE----LEHHRAGSDARACAAIALRAM 165 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +IDTET G+ + + +IA+ +++GKIV+ V P RPI + + I E+ VAD Sbjct: 39 VIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDVAD 98 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE-MPGE------WICTMKLARRLWPGI 110 P E+ + + G VAHNA+FD+ + GE WI ++ LAR P + Sbjct: 99 APSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALPRL 158 Query: 111 K 111 K Sbjct: 159 K 159 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMVA 59 D ET GL Q +V +A V V+ +++ LV P RPISP A A+H +T M+ Sbjct: 443 FDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAEMLR 502 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFD 85 DKP +E V+P + VAHN +FD Sbjct: 503 DKPPLEAVLPAFRAFVQDTVLVAHNGAFD 531 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 14/119 (11%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D ET G + + EIA ++V DG +V L+ P RPI P + IT+A VAD Sbjct: 13 ILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVAD 72 Query: 61 KPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 P +++ + + VAHNA FD L + + + +C++KL+R+L+P Sbjct: 73 APTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131 >UniRef50_A1WP16 Exodeoxyribonuclease X n=4 Tax=Proteobacteria RepID=A1WP16_VEREI Length = 224 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 20/213 (9%) Query: 4 IIDTETCGL-QGGIVEIASVDVIDG---KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I T+T GL + IV+ A + V D +V P +PI A+A H I + +A Sbjct: 5 IFGTKTTGLHEPAIVQAAWLMVKDPFTLTVVERFEQRYNPGKPIELGALATHHILDEELA 64 Query: 60 DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KYSNMAL 117 D P +P G+E+ + H+ +D RV+ P + ICT+ LAR L I ++ A+ Sbjct: 65 DCPPASGFSLP--PGTEYLIGHDVDYDWRVIGAPPVKRICTLALARWLLADIDSHTQAAM 122 Query: 118 YKTRKLNVQTPPGLHHHRALYD---CYITAALLI----DIMNTSGWTAEQMADITGRPSL 170 + + H H A +D C I L+ DI + W + + + + + Sbjct: 123 LYLFERGSASSLLQHAHSARHDVMHCAIVLEHLLARMGDITEATTW--QTLWQRSEQARI 180 Query: 171 MTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLD 203 T TFGK++G A S A D Y WL N D Sbjct: 181 PKTLTFGKHKGLATS-AAPSD--YKHWLLNQPD 210 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 22/160 (13%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G I EI +V V DGKIV+ + LV P R +S + + I+ M+ D+ Sbjct: 14 LDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEMLEDQ 73 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPE---MPGEWICTMKLARRLW 107 P IED++ H+ ++ V HN FD RV + I TM + R L+ Sbjct: 74 PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDRLLF 133 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P ++ + L + + + HRAL D T L Sbjct: 134 PSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCL 168 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 60.5 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 21/177 (11%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL+ I+EI +V + + KIV+ LV+P +P+S IT M+ Sbjct: 384 VFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQMLEV 443 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108 + IE+V+P + VAHNA FD R + E +I T+ L++ L Sbjct: 444 EKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSLLT 503 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMADI 164 Y + + KL HHRA D ITA + + ++ + E ++D+ Sbjct: 504 LKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDL 555 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 84/214 (39%), Gaps = 36/214 (16%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ID ET GL+ I EIA++ V+DG + LV P RP+ + + + IT+ M+A Sbjct: 19 IDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGMLAGA 78 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110 P I DVI + G + HN FD L + E I T+ L R PG Sbjct: 79 PAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFMPGE 138 Query: 111 KYSNM----ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 N+ A Y ++ HRA D L ++ G G Sbjct: 139 HKKNLSAACAFYCIEQVEA--------HRAEADALSAHLLYQKLLEGRGE---------G 181 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 R L T + Y+ K V +R YL+ L Sbjct: 182 REELFTPKSL-IYKAKKEQPVTKRQKEYLQDLIK 214 >UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ET44_ARCB4 Length = 272 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 26/188 (13%) Query: 4 IIDTETCG---LQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +D ET G +G I+E+ +V +G++++ + LV + I P + +IT AM+ Sbjct: 85 FVDIETNGGTPKKGFQIIELGAVKYKNGEVLDSFNSLVFA-KEIPPYIQEVTKITPAMLE 143 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107 P IE V+ + G + ++AH+ FD + L ++ +CT+ LA+R Sbjct: 144 TAPRIEKVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKYSLGKLLNRKLCTIDLAKRTI 203 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL----LIDIMNTSGWTAEQMAD 163 KY +L + ++++ +HHRA YD T + L +I T E + + Sbjct: 204 KSEKYGLSSLKELLNIDIE-----NHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDLIN 258 Query: 164 ITGRPSLM 171 + S++ Sbjct: 259 FSKSDSII 266 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 19/174 (10%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G I+EI +V + +G+IV+ S LV P+ I + + +IT MV Sbjct: 19 VVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDMVK 78 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFD-RRVLPEMPGEWICTMKLARRLWPGIKYSNM 115 D P+I +V+ + VAHNASFD R L P +K + ++ + S Sbjct: 79 DAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLK--PALATIGIKSSHKVMDTVSLSKF 136 Query: 116 ALYKTRK------LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +K + P +HRA+ D TA + + AE++ D Sbjct: 137 TFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187 >UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU3_9CAUD Length = 202 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 IIDTET GL EI + +I+ + ++ LV+P RPI P+A I+ IT MVAD P Sbjct: 23 IIDTETTGLMD-FDEIIEITIINMRGEILLNSLVKPSRPIPPEATKINHITNEMVADAPT 81 Query: 64 IEDVIPHYYGSEW---YVAHNASFDRRVLPE 91 DV P W ++A N+SFD R++ + Sbjct: 82 WSDVFPAVLKIIWKYKWLAWNSSFDARLMVQ 112 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 22/134 (16%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G I EI +V V +G IV+ LV P RPI Q + IT+AMVAD Sbjct: 37 LDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMVADL 96 Query: 62 PWIEDVIPHYY----------GSEWYVAHNASFDRRVLP----EMPG-EWIC----TMKL 102 I++V+P + E V HN SFD R L + G + C TM++ Sbjct: 97 DPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDTMQI 156 Query: 103 ARRLWPGIKYSNMA 116 +R L+P ++ +A Sbjct: 157 SRALFPAQRHHRLA 170 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 60.1 bits (144), Expect = 6e-08, Method: Composition-based stats. Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL GG IV+IA+V +++G+ V LV P RPI + A+H ITEAM Sbjct: 512 VFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITEAM 571 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL 89 VA P I +V ++ VAHNA FD L Sbjct: 572 VATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFL 606 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 23/170 (13%) Query: 5 IDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 +D ET GL I E+A+V G++V S LV P R I + I +VAD P Sbjct: 20 VDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVADAP 79 Query: 63 WIEDVIPHY-----YGSEWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARRLWP 108 + +V+P + + +AHNA FD R L ++ EW I T+ +R L P Sbjct: 80 TLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRALLP 139 Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTS 154 + N L ++ P + HRAL D Y L L+D+++ + Sbjct: 140 RPQVQNHRLGTLAHHFGIKNP---NAHRALADAYTCLELYKCLLDVLHAA 186 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 59.7 bits (143), Expect = 6e-08, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG I++I +V V++GK + L+ P RP+ ++ +H IT M Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADM 605 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89 +A +P IE V+P ++ VAHNA+FD R L Sbjct: 606 LAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFL 640 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 20/160 (12%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G+ I+EI++V V G + + S LV P R I QA ++ IT+ MV++ Sbjct: 17 VFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMVSE 76 Query: 61 KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107 P I + + + G + V HN SFD + + + ++I T+ +AR+ Sbjct: 77 APLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARKCL 136 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P +K+ + + + HRAL DC + Sbjct: 137 PELKHHRLTDL-AEHFGISSKGA---HRALNDCVMNQKCF 172 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 59.7 bits (143), Expect = 7e-08, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 9/95 (9%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57 + DTET GL I++I + + GK+ S LV P RPI P + IH I M Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKPDM 602 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL 89 VA +P I+ V+P ++ VAHNA+FD R L Sbjct: 603 VAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFL 637 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 34/170 (20%) Query: 4 IIDTETCGLQGG--------IVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRIT 54 ++D ET G+ I+EI +V++I+ N ++P+R I Q+ IH IT Sbjct: 9 VLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGIT 68 Query: 55 EAMVADKPWIEDV---IPHYYGSEWYVAHNASF--------------DRRVLPEMPGEWI 97 + + DKP ++ Y + + HNA F D+R + + + Sbjct: 69 DNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCN-VV 127 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 T+ LAR+L+PG K S AL K+NV HR + I A LL Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVS-------HRDFHSALIDAKLL 170 >UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIV2_FIBSS Length = 188 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 22/148 (14%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G G I+EI + ++DG +IV LV P +PI+P + IT+ MV+ Sbjct: 6 VVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDPGKPITPFVRELTGITDEMVS 64 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWP 108 +P + H +VAHN FD +R + +CT+KL+RR++P Sbjct: 65 GQPQFGVIAEHVAALLQDRIFVAHNVQFDCKYMTAELKRCCIKFNPARLCTVKLSRRVFP 124 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHR 135 G YS L ++ L P +HHR Sbjct: 125 GQPSYSLHKLTESLGL-----PDFNHHR 147 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 21/166 (12%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA- 59 I D ET GL I+EI +V + +G++++ + P P+S + + IT+ MV Sbjct: 394 IFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMVQA 453 Query: 60 --DKPWIEDVIPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 D+ + +YG++ HN FD R PE+ + T++++R L P Sbjct: 454 ADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLLHP 513 Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + S L RK NV HHHRA D T L+ +++ Sbjct: 514 --EQSRHTLDSLCRKYNVALE---HHHRANQDAEATGYLMFKLLDA 554 >UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D530A7 Length = 226 Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 19/165 (11%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET GL +G I+EI V++ ++ + + P + ++ + + IH IT + Sbjct: 5 ILDIETTGLDYKEGHRIIEIGCVELNQKEVGSNFHQYINPLKTLTDENIKIHGITNEFLE 64 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWIC-TMKLARRL 106 DKP EDV + +AHNA+FD L P++ + I T+ +AR Sbjct: 65 DKPLFEDVADKFLNFIKDSQIIAHNANFDVGFLNYELEKVSKPQIAKDRIVDTVVIARNR 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 +PG + + AL K KL V + H AL D I + +++ Sbjct: 125 FPGQQVNLDALVK--KLKVNSLVDREFHGALKDAKILTDVYLELQ 167 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 59.3 bits (142), Expect = 9e-08, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 29/182 (15%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL + I+EIA + + +G + + P + ++ I IT+ M+ Sbjct: 483 VFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEMLQG 542 Query: 61 KPWIEDVIPHYYGSE---WYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108 + I+ V+P + VAHNASFD L E P I TM L++R + Sbjct: 543 QQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRYFS 602 Query: 109 G-IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +KY ++ L K+ ++ HHRAL D T+ + I ++ +Q+AD T Sbjct: 603 NLLKYFSLKRLATVFKVKLED-----HHRALADATATSEIFIKMI-------DQLADPTK 650 Query: 167 RP 168 P Sbjct: 651 DP 652 >UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A739_ALHEH Length = 729 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 9/95 (9%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL IV IA V +++G++++ LV P R I ++ H I + Sbjct: 538 VFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHDTT 597 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89 VADKP IE V+P ++ G VAHNA+FD + + Sbjct: 598 VADKPRIETVLPRFHTFVGDSVLVAHNAAFDMKFI 632 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAMVA 59 D ET GL + I+ + +V ++ +++ LV P RPI + +H +T M+ Sbjct: 446 FDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEMLK 505 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEWICTMKLARRLWPGIKY 112 DKP +E+V+P + VAHN +FD R+V + P + T+ LA L+P +K Sbjct: 506 DKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQP-PLVDTLLLAHLLFPDLKD 564 Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITA---ALLIDIMNTSGW 156 + R V P L H AL D +TA A +I ++ G+ Sbjct: 565 HRLERLAER-FGV---PVLGRHTALGDALMTAEVYARMIPLLKERGF 607 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 20/164 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V + +++ S V P+ PI + + IT+ MVA+ Sbjct: 427 VFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEMVAN 486 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 IE V+P + VAHNA FD + E I T+ LAR L P Sbjct: 487 AEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTLLPE 546 Query: 110 IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++ +A L K + ++T HHRA+ D TA + +N Sbjct: 547 LRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLN 585 >UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rhodopirellula baltica RepID=Q7UJ56_RHOBA Length = 355 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 25/171 (14%) Query: 5 IDTETCGLQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPI--SPQAMAIHRITEAMVADK 61 ID ET + ++A+V V G+IV+ L+RP RP SP + IH IT MV ++ Sbjct: 6 IDFETATRRSDSACQLAAVRVRGGEIVDSACWLIRP-RPFVFSPANIQIHGITPGMVREE 64 Query: 62 PWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107 P ++ P G + +AHNASFD VL P+M ++ CT +ARR W Sbjct: 65 PEFGELWPEIQSTLGDDCLIAHNASFDLGVLMACLESHDHPVPDM--QYSCTRAIARRTW 122 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 P + + L+ HH AL D A + + SG T+ Sbjct: 123 P-----QQPRFGLKPLSDWLGIRFRHHDALEDSIACAKIALAAAEDSGATS 168 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 22/163 (13%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEA 56 M I+D ET G GI EIA + + DG+ IV L+ P PI ++ IT+ Sbjct: 1 MYAIVDIETTGGHASANGITEIA-IYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDE 59 Query: 57 MVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARR 105 MVA+ P ++V + + +VAHN +FD + ++ + +CT++L R+ Sbjct: 60 MVANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRK 119 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + PG+ YS L K+ +++V HRA D T L Sbjct: 120 IIPGLPSYSLGNLCKSLEISV-----TQRHRAAGDAAATVKLF 157 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 20/162 (12%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G + GI EIA K+V+ LV P++PI P + + I M Sbjct: 1 MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 + + P +V I VAHNA FD R+L E + +CT++L+++L Sbjct: 61 LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 PG+ YS L R L + P HRA D T L Sbjct: 121 IPGLPSYSLGKL--VRSLGI---PLSDRHRAAGDAQATIKLF 157 >UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3T8_9BACT Length = 205 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 22/130 (16%) Query: 1 MLRIIDTETCGLQGGIVEIASVDVIDG-KIVNPMSHLVRPDRP---ISPQAMAIHRITEA 56 M+ +D ET G V + DG +I L+RP R S +A+H IT Sbjct: 1 MILALDFETANSDPGSVCAVGLAWFDGARITGSWESLIRPHRSCRWFSRLNIAVHGITPE 60 Query: 57 MVADKPWIEDV----IPHYYGSEWYVAHNASFDRRVL-----------PEMPGEWICTMK 101 MVA P DV PH+ GS +AHNA+FD VL PE ++ CT K Sbjct: 61 MVAQAPEWGDVWPELAPHFAGSM-VIAHNAAFDVPVLLRTLELYGFAPPEF--DFFCTCK 117 Query: 102 LARRLWPGIK 111 ARR+WPG++ Sbjct: 118 SARRVWPGLE 127 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%) Query: 4 IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I+D ET G Q + E+ V V++G+IV+ L+ P R I + I+ MV++ Sbjct: 575 IVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMVSN 634 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P +DV I + +VAHN +FD R+ +CT++++R+ PG Sbjct: 635 APVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYLPG 694 Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 YS L ++++ +HHRAL D A Sbjct: 695 HSSYSLGKLCAALDIDLE-----NHHRALDDAKAAA 725 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 15/159 (9%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL Q I+EI V ++DGK ++ S L+RP + + + I + + D Sbjct: 7 LDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHELQDA 66 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGIKYS 113 P +++V+P + V HN FD L + T++L++ L PG Sbjct: 67 PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGASNH 126 Query: 114 NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + Y L + P + HRAL D A LLI ++N Sbjct: 127 RLG-YLCSYLGIDIP---NQHRALDDARGAAMLLIHLLN 161 >UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 Tax=Thauera sp. MZ1T RepID=B8F0B3_THASP Length = 201 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 26/175 (14%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 I+DTET GL G E+ + VID + LVRP P+ +A AIH IT+AM+A P Sbjct: 24 ILDTETTGL-GDDAEVVELAVIDCAGAVLLDTLVRPSGPVPAEAAAIHGITDAMLAGAPT 82 Query: 64 IEDVIPHYYG---SEWYVAHNASFDRRVLPEM-----------------PGEWICTMKLA 103 ++ + G V +N FD RV+ + PG C M+ A Sbjct: 83 WSELHARFCGLVEGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQVLDPGRIHCAMQ-A 141 Query: 104 RRLWPGIKYSNMALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTS 154 + G + Y+ +KL+ Q + HRAL DC +T ++ + +T Sbjct: 142 YAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTLGVVRAMASTG 196 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 21/173 (12%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMV 58 + D+ET GL +V++ +V V++GKI+ LV P R I P + A+H+I++AMV Sbjct: 275 VFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISDAMV 334 Query: 59 ADKPWIEDVIPHYYGSEWY---VAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107 AD P + ++ + VAHNA FD L + + T+ L+ ++ Sbjct: 335 ADAPGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHLSAVVF 394 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA---ALLIDIMNTSGWT 157 G + R LNV P + H L D TA LI ++ G+T Sbjct: 395 GGSAEHTLDALCDR-LNVHIPDDV-RHTGLGDALATAKALVALIPVLEARGFT 445 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 20/166 (12%) Query: 4 IIDTETCGL--QGGI--VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +ID ET G+ + G EIA V V +G +++ L+ + + A+ IT AMV Sbjct: 33 VIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAMVR 92 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDR--------RVLPEMPGEWICTMKLARRLWP 108 P + V+ + GS VAHNA+FDR R+ +++C++ L+RR++P Sbjct: 93 AAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRVFP 152 Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + L +T L P HRAL D TA L I +T Sbjct: 153 DSPNHKLGTLVRTLGL----PASGRFHRALADAEATAQLFARIAHT 194 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +IDTET GL I+ +A+V V + KI++ + + P+ I +++ H IT+ M Sbjct: 44 VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-PEMPGEWICTMKLARRLWPGIKYS 113 VADKP +V+P ++ V H+ +FD +++ EM + C + L + YS Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQIN-NNWLDTMLIYS 162 Query: 114 NMALYKTRKLNVQTPPGLHH------HRALYDCYITAALL 147 + + K + ++ L++ H AL D TA + Sbjct: 163 HAIIKKDERYSLDYLLDLYNVTCNGRHTALGDALATAEVF 202 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 26/159 (16%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G+ + I+EI+++ V + + V S LV P RPI A ++ IT+ MV Sbjct: 60 VFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMVQS 119 Query: 61 KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVLPEMPGE---------WICTMKLARRLW 107 +P +E ++P + E + HN SFD L E +I T+ +AR L Sbjct: 120 EPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARALL 179 Query: 108 PGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYIT 143 PG+ + +++A Y + + HRA DC + Sbjct: 180 PGLSRHRLTDLADY----FKISSEGA---HRAFNDCVMN 211 >UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudomonas sp. CT14 RepID=Q2QCR8_9PSED Length = 197 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 ++DTET G+ G E+ + ++D ++ L+RP +PI +A IHRIT MVA P Sbjct: 15 LLDTETTGVGDGD-EVCEITILDASGTPLLNTLIRPTQPIPAEATGIHRITNDMVATAPA 73 Query: 64 IEDVIPHY---YGSEWYVAHNASFDRRVLPE 91 ++ Y VA+NASFD R+L + Sbjct: 74 WPEIAEQYASIVSGRTVVAYNASFDERLLSQ 104 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG I+ I +V ++ G+I LV P RPIS ++ +H I + Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQPVL 483 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFD 85 + DKP IE+V+P +Y V HN +FD Sbjct: 484 LQDKPPIEEVLPRFYRFARDTVLVGHNVAFD 514 >UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJL2_HIRBI Length = 298 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 32/173 (18%) Query: 4 IIDTETCGL---QGGIVEIASVDV---IDGKIV---NPMSHLVRPDRPISPQAMAIHRIT 54 +IDTET GL + ++EIA V +GK+V + +P PIS + + IT Sbjct: 44 LIDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKSPISEEITKLTGIT 103 Query: 55 EAMVA----DKPWIEDVIPHYYGSEWYVAHNASFDR----RVLPEMPGE-WICTMKLARR 105 MVA D P +E +I S+ +AHNA+FDR R+ P + W C++ Sbjct: 104 NEMVAGQKIDIPAVEQLIKE---SDLIIAHNAAFDRPFAERLTPAFKAKPWACSL----- 155 Query: 106 LWPGIKYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTSG 155 I + Y++ KL+ + G ++ HRA DC+ T LL + TSG Sbjct: 156 --VDIDWKEEG-YESPKLSFLAMEHGFYYKAHRADIDCWATIKLLAQRLKTSG 205 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%) Query: 5 IDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL I+E V + +G++V M ++ P+ P + IT+A + + Sbjct: 388 FDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADLVNA 447 Query: 62 PWIE---DVIPHYYGSEWYVAHNASFD--------RRVLPE-MPGEWICTMKLARRLWPG 109 P IE D I + G VAHNA FD RR+ E + I T+ L+R L+ Sbjct: 448 PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRALFDN 507 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169 + + R + + G+ HRA YD + + + ++++ + M I S Sbjct: 508 RRSYRLGSI-ARFMRIGYDEGV-AHRADYDAEVLSLVFLEMLRLEQLST--MQTIDDLQS 563 Query: 170 LMTTFTFGKYRGKAVSDVAE 189 L +F K R + +A+ Sbjct: 564 LNNESSFKKLRKSHCTVIAK 583 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 19/160 (11%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA-MVA 59 + D ET GL +++IA+ + G IV + P P+S + IT+ + Sbjct: 429 VFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHLQG 488 Query: 60 DKPWIE--DVIPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 KP + + VAHNASFD R LP++ I T++ AR L+P Sbjct: 489 AKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLYP 548 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 K + T++ V HHH A YD T LL Sbjct: 549 EYKRHGLGPL-TKRFQVSLD---HHHMANYDAEATGRLLF 584 >UniRef50_B2HWM0 DNA polymerase III, epsilon subunit n=1 Tax=Acinetobacter baumannii ACICU RepID=B2HWM0_ACIBC Length = 209 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 22/169 (13%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPD----------RPISPQAMAIHRI 53 I+DTET + +EIA V V ++ V D PIS AMA+H I Sbjct: 5 ILDTETSDFEKFPIEIAHVPV---SFLDSGELFVDKDACFDEYFSCPEPISFGAMAVHHI 61 Query: 54 TEAMVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWP 108 E +ADKP E +P ++ + HN +D R + + + ICT+ L+R +WP Sbjct: 62 LETDIADKPSYETFRLPK--DVQYIIGHNVDYDLRAIKLADKSVNAKSICTLALSRLVWP 119 Query: 109 GIKYSNMAL-YKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSG 155 ++ AL Y +V+ + + H A D +TA LL I G Sbjct: 120 DAAHNLSALIYMLSNGSVKARESIRNAHNAKQDVLLTAVLLKQICKALG 168 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 16/159 (10%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I D ET G+ + IVE+A+V V ++ LV P I QA+A+H IT+ MVA Sbjct: 11 IFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMVAG 70 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 P + + VAHNA FD R LP G+ + +++L + +P Sbjct: 71 APSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTTFP 130 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + N+ + ++T G++ HRA D T +L Sbjct: 131 NLPSYNLQSLRA-YFQLETEKGMNAHRAGADVEWTRQVL 168 >UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRZ2_LACRE Length = 283 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%) Query: 5 IDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +DTET GL I++++++ ID K+V+ L+ PD + A +++ I+E+ + + Sbjct: 18 VDTETTGLYPMYGDKIIQLSAIKYIDDKLVDTFDTLINPDGS-NNNAKSVNNISESSLKN 76 Query: 61 KPWIEDVIPHYYGSEW---YVAHNASFDRRVLP-------EMPGEWICTMKLARRLW--P 108 +P ++VI + +V HN SFD L + T+++AR ++ Sbjct: 77 QPTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSEELKIASFKKNSVDTLQIARSIYGNK 136 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 G K +A +K N+ + H +LYD I A+L Sbjct: 137 GNKLQQLA----KKFNIDYK---NLHNSLYDAQIAASL 167 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 16/155 (10%) Query: 5 IDTETCGLQGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 I+T G++G I EI + V +GK+++ S LV P + I + I + MV + P Sbjct: 11 IETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMVFNAPQ 70 Query: 64 ---IEDVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLWPGIKY 112 I D I +VAHN +FD ++ + + +CT++L ++L PG+ Sbjct: 71 FSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLIPGLFS 130 Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 ++ T +N+ P + HRA DC T L Sbjct: 131 YSLGNICT-SINI---PHIDRHRAKGDCDATVTLF 161 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I+E+A V + +GK V+ S + P I + I + MV D Sbjct: 423 VFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMVKD 482 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108 P +E + + G VAHNA FD +P++ + T++LAR L P Sbjct: 483 APELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFLHP 542 Query: 109 GIKYSNMALYKTRKLNVQTPPGL-HHHRALYDCYITAALLIDIMNTSG 155 +K ++ L+ + L +HHRA+ D +L ++N + Sbjct: 543 TMKN-----HRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLINDAA 585 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 20/162 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL + I EI + V GKI + LV P+ I + + I IT MV D Sbjct: 351 VFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMVKD 410 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P IE+V+P + V N FD R+ + ++ T+ +AR L+ Sbjct: 411 CPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALFSD 470 Query: 110 IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 +K +L K RKL + P +HHRA D TA + I + Sbjct: 471 MK--KFSLDKIARKLEI---PAFNHHRASDDARATAQIFIKM 507 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ID E+ G ++ I EIA + V DG++V LV P +PI P + I++AMV Sbjct: 7 LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66 Query: 59 ADKPWIE---DVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107 A+ P E D + +VAH+A FD R+ E +CT+KL+R L+ Sbjct: 67 AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126 Query: 108 P 108 P Sbjct: 127 P 127 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 4 IIDTETCGLQGGI----VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET GL + EIA + + +G++V+ L+ R I +A+ IT M+A Sbjct: 13 VLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDMIA 72 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARRLWP 108 P +V+ + G VAHNA FD+R G + CTM +ARR++P Sbjct: 73 TAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRIYP 132 Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 + + +L + +L P HRA+ D + L Sbjct: 133 DARSHRLSSLAEMLRL----PQTGRAHRAMVDAEMAGHL 167 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 20/155 (12%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL I+EI +V DGK+++ VRP++ ++ +++ I ITE M+ D Sbjct: 385 VLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDMLKD 443 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 P I V+P + VAHNA FD L E +I T++L++ L Sbjct: 444 APDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL-- 501 Query: 110 IKYSNMALYKTRKLNVQTPPG-LHHHRALYDCYIT 143 + + + KL G HHRAL D +T Sbjct: 502 --RNKIKSFSLDKLVDHFGLGAFQHHRALDDARVT 534 >UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS Length = 198 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 38/173 (21%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP- 62 IDTET GL G EI + +ID ++ LV+P +PI +A+AIH IT MVA P Sbjct: 26 FIDTETTGL-GDDAEIVEICIIDSHGFILLNTLVKPTKPIPDEAIAIHGITNEMVAYAPA 84 Query: 63 W------IEDVIPHYYGSEWYVAHNASFDRRVL---------PEMPGEW------ICTMK 101 W +E++I + +V +NA +D R++ P W +C MK Sbjct: 85 WTDICGAVEELIRRF----GFVIYNADYDLRLIRQTYALNGRPSEGAPWMLAAHSVCAMK 140 Query: 102 L--ARRLWPGIKYSNMALYKTRKL-NVQTPPGL----HHHRALYDCYITAALL 147 L R PG KY YK KL + G+ HRAL DC +T ++ Sbjct: 141 LYAEYRGEPG-KYHG---YKWHKLVDAAAHEGVVIEGKAHRALADCKMTLGVI 189 >UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2 Length = 233 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL I+E+ V DG+I S LV P +S + + I + K Sbjct: 8 LDIETTGLNPAVDRIIEVGMARVEDGQITQKYSTLVYPGISVSERITELTGIHNEELTGK 67 Query: 62 PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110 P IED+ I + G + HN FD L + + + I T+KLARR+ P + Sbjct: 68 PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTINDDGIDTLKLARRILPEV 127 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 ++ +++ + + N+ PG HRA YD ++A+LL Sbjct: 128 EHKSLS-FLCQYFNID--PG-RSHRA-YDDAVSASLL 159 >UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO Length = 238 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 32/171 (18%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58 IDTET G I+E +V+VID +I N + P+ + A+AIH +T + Sbjct: 14 FIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGLTNEFL 73 Query: 59 ADKPWIED----VIPHYYGSEWYVAHNASFD---------------RRVLPEMPGEWICT 99 ADKP ED +I G+E + HNA+FD L + + + + Sbjct: 74 ADKPLFEDKVDEMIEFLRGAE-VIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAKIVDS 132 Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + LAR+ P K + AL K ++ + HR + + + LL D+ Sbjct: 133 LDLARKKHPLQKNNLDALCKRYQIR-------NDHRTFHGALLDSELLADV 176 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 23/179 (12%) Query: 4 IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G + I+EI +V + +GK+++ S V P I + + + I + MV D Sbjct: 406 VFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMVKD 465 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 I+ V+P + VAHNA FD + E +I T++ ++ L Sbjct: 466 SDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILVDD 525 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMADIT 165 +K N+ T++ N++ +HHRA+ D TA L L+ +++ +G E++ D++ Sbjct: 526 VKRFNLDTL-TKRFNIKLE---NHHRAVDDANATAELFKKLLSLVSANG--VEKLTDVS 578 >UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dictyostelium discoideum RepID=B0G161_DICDI Length = 483 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 6 DTETCGLQGG--IVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 D ET G+ I+EI +V++IDG + +P I P + IH++T + P Sbjct: 305 DLETSGVTSSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSLQLMSAP 364 Query: 63 WIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW----------ICTMKLARRLWPG 109 IE ++ + G+ VAHN +FD+R+L + + CTMK ++++ G Sbjct: 365 PIEIILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDHICFCTMKYFKKIYNG 424 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146 + YS ++ ++KL + H AL D I A + Sbjct: 425 LNYSLDSI--SQKLKINKLLLRKTHGALIDSEILAII 459 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 57.4 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G+ I+E+ +V V+DG++ + V P PI + + I++A VA Sbjct: 31 LDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADVAGA 90 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY 118 P I++V+P + G VAH+A FD L E G R PG+ ++ Sbjct: 91 PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAG--------GR---PGLLVGRGGVF 139 Query: 119 KTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 T L P L +HR TAA DI Sbjct: 140 DTLPLTRALLPRLPNHR-----LATAARFFDI 166 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%) Query: 4 IIDTETCGLQ--GG--IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL GG I+EI V+++D + + H + P+R IS A +H IT + Sbjct: 7 VLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRESL 66 Query: 59 ADKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARR 105 P + D + + V HNA FD R L + + T+++AR+ Sbjct: 67 IGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMARK 126 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 +PG+ S AL K + N+ T H AL D + A + ++++ Sbjct: 127 KFPGMPASLDALCK--RFNISTQER-KFHGALKDATLLARVYVELLE 170 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%) Query: 5 IDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET GL ++E+A+V +++G I L+ + PI IH IT ++A Sbjct: 16 VDVETTGLSPRRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTVVQKIHGITPELLAG 75 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 + E V P + GS +AHNA FD R + + CT+ +R+ +P Sbjct: 76 EKPPEAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLAFSRKKFPQ 135 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +K + R + P G+ HRA D +TA + I NT Sbjct: 136 LKNHKLE-NVARHVLGGMPKGIKLHRASGDALLTAMIWQVIENTQ 179 >UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=A0K225_ARTS2 Length = 406 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 57/128 (44%), Gaps = 20/128 (15%) Query: 4 IIDTETCGLQGGIVEIASVDVI----DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET GL G IA + V+ DG + N LV P R + PQ IH I A + Sbjct: 7 VVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQH--IHGIRAADIL 64 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGE---WICTMKLARR 105 P D+ + VAHN FD R + E+P E +CTMKLARR Sbjct: 65 HAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMKLARR 124 Query: 106 LWPGIKYS 113 PG S Sbjct: 125 YLPGAGRS 132 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 22/164 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 L I D ET G I++IA+V ++DG+I + S V P RP+ + IT+A Sbjct: 3 LVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSPRRPVPDHITELTGITDAD 62 Query: 58 VADKPWIEDVIPHY------YGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMK 101 VAD P D + + G VAHN FD R LP P +I ++ Sbjct: 63 VADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRFIDSIW 122 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTP-PGLHHHRALYDCYITA 144 L+++LWP N+ + R L ++T G H A D ++ A Sbjct: 123 LSKKLWPAESLHNLDVIVER-LGIETGITGHRRHDARADVHLLA 165 >UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Micrococcaceae RepID=A0JY37_ARTS2 Length = 337 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 5 IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP----DRPISPQAMAIHRITEAMVA 59 ID ET G +G + V G +V S L+RP DR + IH I VA Sbjct: 8 IDFETANGFRGSPCAVGLSKVRGGVVVEEASWLMRPPEDHDR-FDYHNVRIHGIRPEDVA 66 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDRRVL------PEMPG---EWICTMKLARRLW 107 P ++ P + G + AHNA+FD V+ +PG +++CT+ L+RR + Sbjct: 67 GLPRFGELFPEIGAFIGGDVLAAHNAAFDLGVIRSALEVSGLPGPAYDYVCTVMLSRRCY 126 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAE 159 + SN Y + V P ++HH A D A +LIDI N +G AE Sbjct: 127 SLV--SNSLPYAAEEAGV---PLVNHHDAAEDARACAGILIDIARRNGAGSIAE 175 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 22/161 (13%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I D ET GL I+++++V + +G +++ + P P+S Q + + IT+ +V + Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTGITDDLVKN 471 Query: 61 -KPWIE--DVIPHYYGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMKLARRLW 107 KP E + +Y HN FD LP++ I T+ LAR L+ Sbjct: 472 SKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARWLY 531 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P +Y+ L K +N++ HHHRA+ D T LL Sbjct: 532 PNFGRYTLDFLSKKFSVNLE-----HHHRAIDDSTATGMLL 567 >UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha chain n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P2F2_ERYRH Length = 200 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +ID ET G I E++++ + K V+ S LV+PD I P + + ITE MV+D Sbjct: 17 VIDLETTGRSNKFEDITELSAIKYRNYKQVDAFSTLVKPDNSILPFVVELTGITEEMVSD 76 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108 P I+ VI + G++ + HN FD ++ + M +++ T++++R L Sbjct: 77 APKIDQVIKQFVDFIGTDVILGHNVMFDYGLVYDAYLATVGLRMHNDYVDTLRVSRLLNK 136 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 K + +V+ G HR DC TA + I Sbjct: 137 DSKNHKLETL-CAYFDVERLVG---HRGSEDCLQTAEVYI 172 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 38/234 (16%) Query: 6 DTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 DTET G++ ++E+A D + + L+ P PI P+A AIH IT+ MVA+ P Sbjct: 7 DTETTGIKADRDYVIELAVYDPVGNRT---FERLINPGVPIPPEATAIHHITDEMVANAP 63 Query: 63 WIEDVIPHYY----GSEWYVAHNA-SFD--------RRVLPEMPG-EWICTMKLARRLWP 108 ++I + G +AHN FD +R E+P +++ T+K ARR Sbjct: 64 SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123 Query: 109 GIKYSNM----ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + + +Y + N HRAL D + + +++ AE A + Sbjct: 124 DLPRHTLQFLRGIYGIAENNA--------HRALDDVIVLHQVFSAMLDDLS-IAEAYA-L 173 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 +P + FGK++G + V Y++WL PE L L+ E Sbjct: 174 MNQPKDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFE 223 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL + IV+I +V V++G+++ ++ LV P RPI + +H ++ AMV Sbjct: 279 VFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTAMV 338 Query: 59 ADKPWIEDVIP--HYYGSEWY-VAHNASFD----RRVLPEMPGEW---ICTMKLARRLWP 108 P I + H + ++ VAHNA FD RR W I L + Sbjct: 339 QGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAVLF 398 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 G + +L++ PP L H AL D TA L+ ++ Sbjct: 399 GASVPHTLDALCERLDITIPPAL-RHTALGDAQATACALVQMI 440 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 16/121 (13%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G+ I+EI +V V G + S LV P RP+ + I++ MV + Sbjct: 21 VVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMVGN 80 Query: 61 KPWIEDVIPHYYG----SEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107 IE V+P + S+ VAHNA+FD R + ++I T++L+R L+ Sbjct: 81 ASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRALF 140 Query: 108 P 108 P Sbjct: 141 P 141 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 26/162 (16%) Query: 4 IIDTETCGLQGGIVEIASVDVI----DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G Q I EI V ++ G++ L+RP + A +H IT MV Sbjct: 14 VVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGVG--ATRVHGITREMVE 71 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARR 105 P EDV +G VAHN +FD + L PE+ G CT++ ++ Sbjct: 72 PAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAG-GACTLRTSQA 130 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + PG Y + + + + H AL D TA LL Sbjct: 131 MLPGPSYKLLDCCEAVGVELTDA-----HSALGDALATARLL 167 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 30/195 (15%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ID ET GL I+E+ +V DGK V+ + L+ P I + I I + MV+ Sbjct: 8 IDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMVSKA 67 Query: 62 PWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110 P+I+D I + G++ + HN FD + E E I T+K A+++ P Sbjct: 68 PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVLPAN 127 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170 + N+ + ++ T HHRA D A + ++ +++G ++ Sbjct: 128 ESKNLE-HLCEMFDIVTI----HHRAYEDAMSAANVYF-----------RLCELSGEETI 171 Query: 171 MTTFTFGKYRGKAVS 185 + + F K + ++ Sbjct: 172 VEQYHFKKQKAAGIT 186 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 24/182 (13%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAMVA 59 I+D ET G G I EI +V G+++ LV+P+ ISP + IT AMV Sbjct: 33 IVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAMVD 92 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEW-----ICTMKLARRLW 107 D P I V+P + VAHNA FD R ++ W + T+ L+RR+ Sbjct: 93 DAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRRVV 152 Query: 108 PGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMA 162 + N L + P HRAL D T +L ++ G T E++A Sbjct: 153 SRDEVRNHKLSTLAAHFGTEVSP---DHRALSDAKATGEVLHRVLERFGGYGITTLEELA 209 Query: 163 DI 164 + Sbjct: 210 TV 211 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%) Query: 4 IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V+++D K + P+ R SP+A+ +H IT+ + Sbjct: 11 VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70 Query: 59 ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102 DKP + ++ +EW +AHNA FD + P P I T+ + Sbjct: 71 KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 ARR P + +L K + + H AL D ++ + + I +M Sbjct: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 56.6 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 23/167 (13%) Query: 4 IIDTETCGL-----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I +IA+V V DG+I+ S + P R I P + I E+MV Sbjct: 7 VVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDESMV 66 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---MPG--EWIC----TMKLARRL 106 P +DV P +VAHN FD L E G E C T++LA+ L Sbjct: 67 KQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQIL 126 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P Y L K +L P HRA D TA L + +N Sbjct: 127 LPTADSYKLRDLAKQHELEHDQP-----HRADSDALATAELFLQFLN 168 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +ID ET G + I+E+ ++ + +G++V S L +P R + + + I+ M+A Sbjct: 24 VIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEMLAS 83 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 P + DV P Y G V HN FD + L + + + L+R+L P Sbjct: 84 APELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKLLP 143 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYIT 143 + + + N+ G+ HR+L+DC T Sbjct: 144 DLTSHKLCRVSSH-FNI-CVEGM--HRSLFDCKTT 174 >UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria RepID=B0UD78_METS4 Length = 238 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 1 MLR--IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRIT 54 MLR ++DTET G +VEI +++++ H + P RP+S A+A+H + Sbjct: 1 MLREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGLA 60 Query: 55 EAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMP-----GEWIC 98 +A +ADKP ++P + G +V HNA+FD R+ P + Sbjct: 61 DAFLADKPPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGVVD 120 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 T+ LARR P + AL ++ H AL D I A + I+++ Sbjct: 121 TLALARRKHPNAANNLDALCARYGIDNSRRT---KHGALLDAQILAEVYIELLG 171 >UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria RepID=Q5ZVQ6_LEGPH Length = 251 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 29/165 (17%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 I+DTET G+ QG ++EI +++ID K+ H+ + P R + A +H I+ + Sbjct: 23 ILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFL 82 Query: 59 ADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPGEWIC----TMKL 102 DKP +D++ + GSE + HNA FD + V E C T+ L Sbjct: 83 QDKPLFQDIVTEFIQFVEGSE-LIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLIL 141 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 AR PG + S AL K +++ H +R L+ + A +L Sbjct: 142 AREKHPGQRNSLDALCKRYEID-------HFNRELHGALLDAEIL 179 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 31/203 (15%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +ID ET G+ G EIA V + G+IV L+ I + I+ M+ Sbjct: 7 VIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNMIR 66 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDR--------RVLPEMPGEWICTMKLARRLWP 108 P E V + + GS VAHNASFD+ R+ + C++ LARRL P Sbjct: 67 TAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRLMP 126 Query: 109 GI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN----TSGWTA--- 158 G K + Y + P HRA+ D + A L + N T G +A Sbjct: 127 GAPNHKLGTLTRY------ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISH 180 Query: 159 EQMADITGRPSLMTTFTFGKYRG 181 + + + P+ + T + RG Sbjct: 181 QMLCSLQKVPAAKISETLKRQRG 203 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 21/165 (12%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G I EI +V V + ++V L+ P RPI + + + IT MV D Sbjct: 565 VVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMVRD 624 Query: 61 KP---WIEDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P I D + G +VAHN +FD R+ +CT RR +PG Sbjct: 625 APVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRYPG 684 Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 Y L + + HHRAL D AA L++++NT Sbjct: 685 HTSYGLGKLCAIYGIELDD-----HHRALCDAR-AAAHLLNLINT 723 >UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RR73_9PROT Length = 484 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 26/188 (13%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G ++E+ V+V D V S LV P+ PISP + I +AMV Sbjct: 12 LVFVDLETSGANFASDRVIEVGLVEV-DADGVREWSVLVNPEAPISPFITRLTGIDDAMV 70 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107 P + P VAHNA FD +R+ E +CT+KL+R+L+ Sbjct: 71 GSAPTFRQLAPTLLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPTLCTVKLSRKLF 130 Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMA 162 P N+ AL L V + HRAL D I L D+ + + +A +A Sbjct: 131 PEHHRHNLDALVTRHGLKVAG----NRHRALADARILWELWQCWHKDLASETVRSA--VA 184 Query: 163 DITGRPSL 170 I GRP L Sbjct: 185 TIVGRPEL 192 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 5 IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 +D ET G + I + V V++ +IV LV P S + +H IT V D P Sbjct: 44 LDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVIDAPS 103 Query: 64 IEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWPGIK 111 E V P+ + VAHNA+FD VL + + + C+ +LA+R + Sbjct: 104 FEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTIDAYR 163 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 Y L K KL+ HH AL D A + ++ + M I G+ Sbjct: 164 YGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHYD-NLQSMLQIYGK 213 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 27/164 (16%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL I+E+ ++ +G V S LV P+ IS +A I+ IT MV Sbjct: 55 FDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMVKKA 114 Query: 62 PWIEDVIP----HYYGSEWY-----VAHNASFDRRVLPEM------PGEWIC--TMKLAR 104 P ED++ + G + AHNA FD L + + +C T+ L+R Sbjct: 115 P-TEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSLSR 173 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 ++ PG+ Y + + N++ HRA+ D + +L Sbjct: 174 KIIPGLSNYKQTTV--AKHFNIKNK---QEHRAISDAEVCGEIL 212 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 32/178 (17%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL QG I+EI V++I+ K+ H ++P+R I A+ +H IT + Sbjct: 5 VLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEFL 64 Query: 59 ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLP---EMPGEW----------ICTMK 101 ADKP +D+ + G+E V HNA FD L + G + T+ Sbjct: 65 ADKPVFKDIADEFMAFVDGAEL-VIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGWT 157 LAR PG K + AL K + R L+ + A +L D+ + T G T Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSA-------RDLHGALLDAEILADVYLLMTGGQT 174 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEAMV 58 +ID ET GL + I+EI +V V +G + + P+ + +SP + IT++ + Sbjct: 59 VIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDSDL 118 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRL 106 P +++P + G V HN +FD R + ++ T KLA+ + Sbjct: 119 VGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAKTV 178 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 PG+ YS AL K + +HHRA+ DC +T +L Sbjct: 179 VPGLSHYSLEALCKHFGI------AGNHHRAVDDCELTEKVL 214 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 DTET G + +VEI V ++ + L+ P++P+ P+A +++IT+ M+A + Sbjct: 19 FDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAGQ 78 Query: 62 PWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG 109 P +V+P + + VAHNASFD + ++ + T+ AR PG Sbjct: 79 PKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARETLPG 138 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYI 142 ++ + T+ VQ ++ HRA D + Sbjct: 139 LQSYALQNLATQ-FGVQ---AVNAHRAEDDARV 167 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 56.2 bits (134), Expect = 8e-07, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 22/166 (13%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 I D ET GL I+EIA++ + + +I++ L+ P + ++P + I+ + + Sbjct: 411 IFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDLKN 470 Query: 61 KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARR-LW 107 +P I ++P + + +AHN SFD L + +I T+ LAR L Sbjct: 471 QPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYCLD 530 Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++Y N+ +L K K++ + +HHRA+ D IT + ++N Sbjct: 531 SNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%) Query: 4 IIDTETCG---LQGG-IVEIASVDVIDGKIVNPMSH--LVRPDRPISPQAMAIHRITEAM 57 +IDTET G L+G I+EIA++ + GK+ ++ LV P I IH + Sbjct: 7 VIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLKNED 66 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 V +P I DV P Y G+ V H+ D + + ++I T+K+A+ Sbjct: 67 VTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKIAKD 126 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 L+ YS L K +L ++ P HRAL D +T + + ++ G Sbjct: 127 LFKEGSYSLAELAK--RLKIKDAP---THRALDDARVTGKVFLAMVKKLG 171 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL I+EI +V + +G+I V P RP+S + + + IT+ M+ Sbjct: 372 FDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKMLEGA 431 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGE--WICTMKLARRLWPGI 110 P E+ I + G AHNA FD + E +P E I T+ LA+ L P + Sbjct: 432 PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLLPDL 491 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 + + +++ PP HHRA D + A +L+ Sbjct: 492 GKYKLDIVAE---HLRLPP-FKHHRADADAGMVAYMLV 525 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 55.8 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 19/159 (11%) Query: 4 IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL ++++A+ + G ++ + P P+S + IT+ V + Sbjct: 427 VFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHVKN 486 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108 +E V+ + VAHNA+FD R LP++ I T++ AR L+P Sbjct: 487 AKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYP 546 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 K + T++ V HHH A YD T LL Sbjct: 547 EYKRHGLGPL-TKRFGVALE---HHHMANYDAEATGRLL 581 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 55.8 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 9/95 (9%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET GL QG I++I ++ +++GK++ LV P R I P+++ H I M Sbjct: 518 VFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEM 577 Query: 58 VADKPWIEDVIP--HYYGSEW-YVAHNASFDRRVL 89 V +P I +V+P H Y S+ V HN +FD R L Sbjct: 578 VQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFL 612 >UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIB4_BDEBA Length = 276 Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 19/151 (12%) Query: 5 IDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 DTET G + +VE +V G+ V + L +P P++ + IH IT MVAD Sbjct: 15 FDTETSGAYPVGHDVVEFGAVKWYKGEEVGRLQFLFKPREPMTDFIIGIHGITNEMVADA 74 Query: 62 PWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWPG 109 P I + I ++ +AH+A FD + LP +P +CT L+R+ G Sbjct: 75 PLITEKIREIHEFFKGAIVMAHHAPFDLGFMAIDFEKNQLPLLPEPALCTSLLSRKWIHG 134 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDC 140 ++ + R LN+ G HRA D Sbjct: 135 VENHKLQTL-VRHLNID---GGQAHRAYDDA 161 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 26/168 (15%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET GL Q G +EI +V V G+IV+ L+ P IS + IT M++ Sbjct: 11 VLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEMLS 70 Query: 60 DKPWIEDVIPHYYGSEW-----YVAHNASFDRRVLP-EMP-------GEWICTMKLARRL 106 +P E+V+ + SE+ VAHNASFDRR L E+ G C++ ++RR+ Sbjct: 71 GQPCCEEVMTEF--SEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128 Query: 107 WPGIKYSNMALYKTRKL--NVQTPPGLHHHRALYDCYITAALLIDIMN 152 Y + +K + L + P HRAL D +TA L + +++ Sbjct: 129 -----YQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMSMID 171 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G I++ A+V + GKI++ S L+ P + I + + ++MV+ Sbjct: 7 VVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSMVS 66 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEW---ICTMKLARRLW 107 D P ++ P ++VAHN FD L E PG + I T++LAR + Sbjct: 67 DAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELARTVL 126 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHH---HRALYDCYITAALL 147 P YK L+ + G+ H H+A D Y TA LL Sbjct: 127 PCSDS-----YKLSDLSAKE--GIMHDRPHQADSDAYATAKLL 162 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 9/91 (9%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSH--LVRPDRPISPQAMAIHRITEAM 57 + DTET GL +GG IV+IA + +++G+I+ S LV P RPI P + +H I++ M Sbjct: 496 VFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISDDM 555 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFD 85 V D P I + ++ VAHNA FD Sbjct: 556 VQDAPDIIEAGRRFHDFCQGAVLVAHNAPFD 586 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 28/187 (14%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G + GI EIA + DG ++V+ L+ P+RPI P + I MV Sbjct: 5 VLDIETTGGKFDEEGITEIA-IHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMVQ 63 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 P V I VAHNA FD R+L + +CT+ L++RL P Sbjct: 64 TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLIP 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWT-------AEQ 160 + ++ R L + P + HRA D T LL +++ +G T AE Sbjct: 124 DAESHSLGKL-VRSLGI---PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRAET 179 Query: 161 MADITGR 167 + +++ R Sbjct: 180 LGELSNR 186 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 26/150 (17%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I+EI +V V +G+IV+ S V P+ PI + + I + MV + Sbjct: 475 VFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMVMN 534 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109 P IE+++P + VAHNA FD ++ + I T+ LA+ L P Sbjct: 535 APKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLMP- 593 Query: 110 IKYSNMALYK----TRKLNVQTPPGLHHHR 135 N+ YK T+ LNV HHR Sbjct: 594 ----NLHNYKLDTLTKHLNVVLES---HHR 616 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 9/91 (9%) Query: 4 IIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57 I DTET GL + +IA+ V++GK+V LV P RPI A IH IT+AM Sbjct: 293 IFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITDAM 352 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFD 85 VAD P ++G +AHNA FD Sbjct: 353 VADAPDFLTAGRAFHGFADGAVLIAHNAPFD 383 >UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria RepID=B0RTE6_XANCB Length = 245 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 30/169 (17%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+DTET GL+ +VEI +V++++ + N +RPD P A + +T + Sbjct: 5 ILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEFL 64 Query: 59 ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLP---EMPGEW----------ICTMK 101 ADKP +V+ + G+E + HNA+FD L + G+ + T+ Sbjct: 65 ADKPVFAEVVEEFLAYIDGAELII-HNAAFDLGFLDNELSLLGDQFGRIIDRATVVDTLM 123 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 +AR +PG + S AL K +L V + HR L+ + A +L D+ Sbjct: 124 MARERYPGQRNSLDALCK--RLGVD-----NSHRQLHGALLDAQILADV 165 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 DTET GL+ I+EI +V I+ S L+ PDR I P I+ IT+ M+ +K Sbjct: 18 FDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDMLVNK 77 Query: 62 PWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109 P +++ + VAHNA+FD L + + + T +A+ ++PG Sbjct: 78 PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAVFPG 137 Query: 110 IKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALL 147 + Y+ + L +Q +H HRA D + L Sbjct: 138 LGRHQ---YRLQNLALQFGLTVHAAHRAEDDARVCMELF 173 >UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulus RepID=Q5NUS9_9ACTO Length = 288 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 36/170 (21%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR--PISPQAMAIHRITEAMVADK 61 ++DTET L G I+EIA +D G+ + + LV+P I PQA A+HR+T +AD Sbjct: 132 LLDTETTALDGQIIEIAILDAATGRPL--LDTLVKPTEGVEIDPQAHAVHRLTLEDLADA 189 Query: 62 PWIEDVIPHYY---GSEWYVAHNASFDR-RVLPEM------------PGEWICTMKLARR 105 P E V+P +A++A+FDR R++ P W C M+ Sbjct: 190 PPWEKVLPKVRKLTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWCLMQ---- 245 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 + Y + ++ P HRA+ DC LL I G Sbjct: 246 -------ARSQFYGHGRRSLNGP-----HRAMGDCRKERELLKKISEGHG 283 >UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM Length = 202 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 20/177 (11%) Query: 5 IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62 ID ET G +A+V+V DG++ + L++P + IH I+ V D P Sbjct: 23 IDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKDVTDAP 82 Query: 63 WIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMP-GEWICTMKLARRLWPGI 110 +V + + VAHNASFD VL + P CT+++AR++WP + Sbjct: 83 TFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIARKVWPAL 142 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA-LLIDIMNTSGWTAEQMADITG 166 +K + HHRAL D AA LL M T E++A G Sbjct: 143 DD-----HKLNTVGAHLNINFRHHRALDDARTCAAILLFAGMETGTDDIEELAQKIG 194 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 24/167 (14%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMA-IHRITEA 56 I DTET G QG I+ IA+V + +G+I LV P R I PQA+ + IT+ Sbjct: 80 IFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSI-PQAVCDLTGITDD 138 Query: 57 MVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 MVADK I V+ + G VAHNA FD L E+ I T KL R Sbjct: 139 MVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLGR 198 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 L+P + ++ R V+ P H AL D +TA + +D + Sbjct: 199 ALYPQLLSHDLDTL-IRHHRVKERP---RHTALGDSLMTAEIFLDYL 241 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/274 (22%), Positives = 99/274 (36%), Gaps = 67/274 (24%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L I D ET GL I++I+ + V S V P++PI P + IT+ MV Sbjct: 9 LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68 Query: 59 ADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGEWI----------CTMKLAR 104 D P + + + G ++ ++ FD +P + E++ C + A+ Sbjct: 69 KDAPTFKQIAKSLQETFAGCDFAGFNSNRFD---VPMLAEEFLRAGVDFDFQRCRLIDAQ 125 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----------------- 147 ++ ++ N+A + HRA D T +L Sbjct: 126 NIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEK 185 Query: 148 ------------------IDIMNTSGWT------AEQMADITGRPSLMTTFTFGKYRGKA 183 +D W + + D G+P L F F KY+G A Sbjct: 186 TLANDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWA 245 Query: 184 VSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 V+DV RDPG+ W+ +S + L K L Sbjct: 246 VADVVHRDPGFCNWI------LSSDFPLNTKQVL 273 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 14/121 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +ID ET G + + EIA + + G+IV LV P+RPI + IT+ MV Sbjct: 7 LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66 Query: 59 ADKPW---IEDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107 A P + D + + +VAHNA FD R+ + +CT+KL+R L+ Sbjct: 67 AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126 Query: 108 P 108 P Sbjct: 127 P 127 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 27/166 (16%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 I+DTET G Q G I+E+ ++++I+ K+ H+ + P++P+ ++ +H IT+ + Sbjct: 235 ILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVG-DSVQVHGITDEFL 293 Query: 59 ADKP---WIEDVIPHYYGSEWYVAHNASFD--------RRV-LPEMPG--EWICTMKLAR 104 DKP I D + Y +AHNA+FD +RV LP + E T+ LA+ Sbjct: 294 VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTLALAK 353 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 PG K S AL + ++ + R + + A +L D+ Sbjct: 354 NKHPGQKNSLDALVRRYEIPAR-------DRTFHGALLDAEILSDV 392 >UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JYJ5_DESAC Length = 193 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 17/162 (10%) Query: 16 IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYY--- 72 I+ A+V + G+I V+P I P+++ H IT+ M+ DKP I +V+P + Sbjct: 23 IINAAAVKIKKGRITKIYETYVKPPTSIPPESIQFHGITDDMLVDKPSIGEVLPEFMTFI 82 Query: 73 GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLARRLWPGIKYSNMALYKTRK 122 G H+ +FD ++L E W+ TM L + + +N + Sbjct: 83 GDSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLDTMLLHKLVME----NNTSTQLDDL 138 Query: 123 LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 LNV HRAL D TA + + I++ + + + D+ Sbjct: 139 LNVYCIDCEQRHRALGDSIATAKVFLRILHELSNSYQTLNDL 180 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 29/172 (16%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G G I EI +V V G++ + +S LV P R I Q + IT AMVA Sbjct: 33 VVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMVAG 92 Query: 61 KPWIEDVIPHYYGSEW---------YVAHNASFD----RRVLPEMPGEW-----ICTMKL 102 P + + + + +W VAHNA FD R + +W + T+ L Sbjct: 93 APPVPEALERFL--QWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 ARR W + N L + P HRAL D T +D+++ + Sbjct: 151 ARRAWTRSEVPNHRLATL--ASFVGSPTRPTHRALDDARAT----VDVLHAA 196 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 21/156 (13%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + I EI V V D V S LVRP I + I + MV Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQV-DEDGVREWSTLVRPASRIPETIQRLTGIDDDMV 70 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107 AD P ED+ + +VAHNA FD RR +M + +CT+KL+RRL+ Sbjct: 71 ADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRLF 130 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYI 142 P + + L + L V HRAL D + Sbjct: 131 PDHRRHGLDHLIERHGLAVAD-----RHRALGDARL 161 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 21/165 (12%) Query: 4 IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL I+EI V++I+ H + P+R I + IH I+E + Sbjct: 9 VLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEFL 68 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW----------ICTMKLARR 105 DKP DV + ++ V HNA FD + L G+ + T+ LAR+ Sbjct: 69 EDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLARK 128 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + G S AL K ++++ G H AL D + A + +++ Sbjct: 129 KFVGSPASLNALCKRFDISLE---GRELHGALVDAQLLAKVYVEL 170 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 14/158 (8%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL IVE+ V V DGK LVRP RP+ + ++ + +A +A+ Sbjct: 7 VLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADLAE 66 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIKYS 113 +P +V P + G+E V H+ FD L G + T+ LAR + PG+ Sbjct: 67 RPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLPSY 126 Query: 114 NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + L L++ PG HRA+ D A L ++ Sbjct: 127 RLELL-CAHLDLPERPG---HRAMEDARAAAGLFTALL 160 >UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UMV7_HODCD Length = 182 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 22/159 (13%) Query: 4 IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPI--SPQAMAIHRITEAMV 58 I+DTET GL ++E+A++ + DG+ H +P+ S A +H I+ + Sbjct: 10 ILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGISNEFL 69 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLARR 105 +DKP + + +AHNA FD +++ P G W ++ +A++ Sbjct: 70 SDKPAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAGCWRDSLSIAKQ 129 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 L+P S AL K L +T H A DC + A Sbjct: 130 LFPNRSNSMAALCKRFNLECETET----HSAARDCELLA 164 >UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease n=3 Tax=Magnetospirillum RepID=Q2W5M2_MAGSA Length = 216 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 28/157 (17%) Query: 12 LQGGIVEIASVDVIDG----KIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDV 67 L G ++EI V+++ G K ++P PI+ ++A+H IT A + D P DV Sbjct: 41 LPGVMIEIGCVELLRGEDGWKTGESWHRRIQPGGPIAKASIAVHGITPAELKDAPQFRDV 100 Query: 68 IPH---YYGSEWYVAHNA-----------------SFDRRVLPEMPGEWICTMKLARRLW 107 + + G + +AH+A FD + + +++CT +L+R+ + Sbjct: 101 LDEFETFIGQDMLLAHSAENEIEFLNFEYARVGRCGFDDVIFSD--NDFVCTQELSRQFF 158 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 PG+ S L +L + HH AL D +TA Sbjct: 159 PGVPGSLDVL--CDRLWIDRSDRFEHHGALLDAILTA 193 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 19/170 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ++D ET G I EI +V V G+++ V P+RPI ++ IT+A V Sbjct: 21 LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE----W-----ICTMKLARRL 106 A+ P I V+P + G VAHNA FD L W + T+ LAR + Sbjct: 81 AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIMNTSG 155 + + + ++ L G+ HRAL D T +L I+ G Sbjct: 141 F---RRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIERLG 187 >UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105 RepID=A6GQ42_9BURK Length = 308 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 29/171 (16%) Query: 4 IIDTETCGLQGGIVEIASVDVI----------DGKIVNPMSHLVRPDRPISPQAMAIHRI 53 ++DTET GL E+ V + G ++ L P I+P+ AIH I Sbjct: 48 VVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAIHGI 107 Query: 54 TEAMVADKPWIEDVIPHYYG-SEWYVAHNASFDR----RVLPEMPGE-WICTMKLARRL- 106 T MV + + E + + +VAHNA+FD+ R P + W CT R L Sbjct: 108 TNEMVKGQRFDEAALKALCSEAALFVAHNAAFDKPFMLRRFPWLEKSIWACTF---RELP 164 Query: 107 WPGIKYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTS 154 W YS RKL + + G H HRA+ DC +L M TS Sbjct: 165 WTQENYSG------RKLEYLLSDCGYFHGAHRAVEDCNALVHVLAQPMKTS 209 >UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8F3_9DELT Length = 179 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 24/149 (16%) Query: 5 IDTETCGLQGGIVEIASVDVID-GKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62 ID ET + + V+D G+IV L+RP R +P + +H I VAD+P Sbjct: 13 IDFETADAKRDSACAVGLVVVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIHWEDVADQP 72 Query: 63 WI----EDVIPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW-- 107 D+ P + G+++ VAHNASFD+ VL E ++CT++LAR W Sbjct: 73 AFGELWPDLSPLFEGADFLVAHNASFDKSVLAACCRESRCLPPVQPFLCTVQLARTTWQL 132 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRA 136 P K N+ + L HHH A Sbjct: 133 PSNKLPNVCCHLGITLT-------HHHAA 154 >UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 Tax=Yersinia pestis FV-1 RepID=UPI000169A625 Length = 143 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 27/135 (20%) Query: 4 IIDTETCGLQG--------GIVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54 ++DTET G+ I+EI +V VI+ + H+ V+P R + P+A +H I+ Sbjct: 10 LLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKPARLVDPEAYGVHGIS 69 Query: 55 EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPG-EWICTM- 100 + +ADKP D+ P + G E V HNA+FD R + ++P E +C + Sbjct: 70 DEFLADKPTFADITPEFLDFIRGGEL-VIHNAAFDIGFKDYEFRMLQQDIPKTETLCPIS 128 Query: 101 ---KLARRLWPGIKY 112 ++ RL+PG ++ Sbjct: 129 DNKEMPPRLFPGKRH 143 >UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 Tax=Alphaproteobacteria RepID=A9VZJ3_METEP Length = 297 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%) Query: 27 GKIVNPMSHLVRPDR-PISPQAMAIHRITEAMVADKPWIEDVIPHY---YGSEWYVAHNA 82 G++V S L+RP + SP + +H I A V D P +VI + +AHNA Sbjct: 29 GRVVRRESRLIRPPQLRFSPGNIRVHGILPADVRDAPTFPEVIAEFLPDLSGGLMLAHNA 88 Query: 83 SFDRRVL-----------PEMPGEWICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGL 131 FD VL P+M G CT+++ARR++P +A R L ++ Sbjct: 89 GFDMGVLAASLAAWGEPVPDMAGH--CTLQIARRVFPDPAGHGLAKVAGR-LGIR----F 141 Query: 132 HHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 HH A D + A + + ++ +G A +AD+ Sbjct: 142 EHHDAGEDAFACAEIALAALHETG--AADIADLA 173 >UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT Length = 619 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 22/164 (13%) Query: 5 IDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAMV 58 D ET GL QG ++++ +V + G++++ S L+ P PI Q+MA H I+ MV Sbjct: 433 FDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSMAYHGISNDMV 492 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107 KP + V+P + G+ HN +FD + L GE + TM LA L Sbjct: 493 KGKPPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIALRQPVLDTMILAALLD 552 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 PG S A+ +L V P L H AL D +TA +L ++ Sbjct: 553 PGYDLSLEAVAG--RLGV---PPLPHRSALSDALVTAEILARLI 591 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 22/172 (12%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET GL I EI +V + + +IV S V P PI + IT+ MVAD Sbjct: 593 VFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMVAD 652 Query: 61 KPWIEDV----IPHYYGSEWYVAHNASFD----RRVLPEMPGEW----ICTMKLARRLWP 108 P EDV + G+ AHNA FD R M + + T+ +A+ Sbjct: 653 AP-TEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAALK 711 Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 GIK Y + K KL HHRA+ D + + + I+N + TA+ Sbjct: 712 GIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 18/173 (10%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL Q I EIA++ V+DG I V P R + + IT+ M+AD Sbjct: 8 LDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGMLADA 67 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110 P IE++I + G + HN FD L E E I T+ L R G Sbjct: 68 PPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFMTGE 127 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 N++ +V P HRA D L ++M+ G M D Sbjct: 128 TRKNLSC-ACSYFHV---PQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD 176 >UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5A0_BIFAD Length = 261 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 5 IDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 +D ET GL I+E+ +V + G+ V S LV P PI + I IT+ V KP Sbjct: 102 VDIETTGLGRDARIIELGAVRIRHGRKVASYSQLVNPQIPIPAKVTQITGITDRNVKGKP 161 Query: 63 WIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYK 119 I+ +P +Y G + ++ HN R +P + E A+R+ G+ +++ Y Sbjct: 162 TIDKALPKFYAFCGRDTWIGHN--IRRFDIPVIARE-------AQRVGAGM--PDVSFYD 210 Query: 120 TRKLNVQTPPGLHHHRAL 137 T +L+ P L HHR + Sbjct: 211 TMELSQALLPQLDHHRVV 228 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 25/211 (11%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET G I++ V V DGKI+ + V P++ + Q ++ I+ V Sbjct: 15 VVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQVQK 74 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWP 108 P+ EDV I HY +VAHN FD L P + I T++LA+ P Sbjct: 75 APYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQIFLP 134 Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMAD 163 K ++ L ++ L+ + P H+A D +TA LL+ I T E++A+ Sbjct: 135 TEKSFRLSDLSESLGLSHENP-----HQADSDAQVTAELLLLIQEKMKSLPLVTMEKIAE 189 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 ++ + + T+ + + V +P Y Sbjct: 190 LSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220 >UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function n=3 Tax=Proteobacteria RepID=Q3IIS2_PSEHT Length = 237 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 36/172 (20%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 ++DTET G+ QG I+EI V++++ ++ H+ + P R +A+ +H IT + Sbjct: 7 VLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHGITNEFL 66 Query: 59 ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLPEMPGEW------------IC---- 98 DKP + ++ G+E V HNA FD + M E+ C Sbjct: 67 RDKPLFHQIAQEFFDYIKGAEL-VIHNAPFD---IGHMDNEFSLLNQGYPKTATFCQVLD 122 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 T+K+AR L PG K + AL R+ +V R L+ + + +L D+ Sbjct: 123 TLKMARDLHPGQKNNLDAL--CRRYDVDNAK-----RTLHGALLDSEILADV 167 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 29/169 (17%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++DTET GL + ++EI++ + +I+ V P PI + + IT+ V Sbjct: 21 VLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDVKG 80 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPGI- 110 P ++ + + G +AHNA+FDR + +PG WI T+ L+R P + Sbjct: 81 APSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPRLS 140 Query: 111 --KYSNMA-LYKTRKLNVQTPPGLHHHRALYD----CYITAALLIDIMN 152 K S+MA + T K+ HRA D C + LL+ +MN Sbjct: 141 SHKLSSMAEAFGTMKVT---------HRASDDVDALCGMWRILLLGLMN 180 >UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP23-BS72 RepID=A5MUE3_STRPN Length = 308 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%) Query: 5 IDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 +D ET +G + I V IDG+ V+ L+ P+ S + + IH I V P Sbjct: 8 LDVETANSFRGSLCSIGLVKFIDGQEVDSFYTLINPEEKFSSRNIKIHAIKPEDVIGAPT 67 Query: 64 IEDV---IPHYYGSEWYVAHNASFDRRVLP------EMPG---EWICTMKLARRLWPGIK 111 +V I ++ + VAHNA FD L E+P ++ C+ ++ + I Sbjct: 68 FPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQVCK-----II 122 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADITGRPSL 170 +++ +K L L HH AL D +L++I+ S T+ +M G P L Sbjct: 123 LTDLPNHKLHTLAEHFKISLDHHNALSDARACGLILLEILKLSKQTSIRKMLKNLGYPEL 182 >UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTJ1_9BIFI Length = 214 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL Q I EI +V V DG+I + S L+ P + I + A+ I++AMV D Sbjct: 21 LDIETTGLAPRQETITEIGAVRVRDGRIADRFSMLINPGKHIPSRITALTGISDAMVEDA 80 Query: 62 PWIEDVIPHY---YGSEWYVAHNASFDRRVL 89 P I++ IP + + + HN FD L Sbjct: 81 PMIDEAIPAFVDWVDGDRLIGHNIRFDLSFL 111 >UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN05_9FIRM Length = 196 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 ++D ET G+ I EIA++ V+ G+I + LV+ PI + + IT M+ ++P Sbjct: 33 VMDIETTGMYSDITEIAALCVVSGEIRDTFHTLVKAKGPIEKRVERLTGITSDMLEEQPP 92 Query: 64 IEDVIPHYYGS-EWY--VAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG-- 109 I+DV+P + E + V H D V+ P + ++I T LA+ L P Sbjct: 93 IDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYIDTHSLAKLLLPERE 152 Query: 110 ---IKYSNMALYKTRKLNVQTPPGLHHHRALYDC 140 KYS AL + +L T HRA+ DC Sbjct: 153 GEHRKYSVKALAEYYELPCST-----FHRAMDDC 181 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAMV 58 ++DTET G+ QG ++EI +V++ID ++ + P R P+A+ IH +T+ + Sbjct: 7 VLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEFL 66 Query: 59 ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLP---EMPGEW------ICTMKLARRL 106 D+P + D + G + HNA FD L ++ G+ + T+ ARR Sbjct: 67 QDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARRR 126 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 PG K +L R+ +V+ + HR L+ + +L ++ Sbjct: 127 HPGQKNDLNSL--CRRYSVE-----NSHRELHGALLDTRILAEV 163 >UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria RepID=B4RBF9_PHEZH Length = 234 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 23/167 (13%) Query: 4 IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58 ++DTET G +VEIA +++ D H + P R + +A +H ++ A + Sbjct: 6 VLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHGLSTAFL 65 Query: 59 ADKPWIE-----DVIPHYYGSEWYVAHNASFDRRVL---------PEMPG-EWICTMKLA 103 KP E + + VAHNA+FDR + E+P WI T+ LA Sbjct: 66 RGKPKFEAPEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALA 125 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 ++ +PG+ S AL K K+++ H AL D + AA+ +++ Sbjct: 126 KQRFPGMHNSLDALCKRFKISLAE---REKHGALIDTKLLAAVYLEL 169 >UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZA6_HERA2 Length = 282 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 25/171 (14%) Query: 4 IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + D E+ GL Q G I E+A++ + +I++ LV P R I P A A++ I+ MVA Sbjct: 28 LFDMESTGLDVQIGHRICEMAAMRIQGREIIDRCEFLVNPQREIDPAAFAVNGISAEMVA 87 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107 + P ++ P + VAHNA FD R LP + I T+ LARR Sbjct: 88 NAPSFGEIWPKVNKLFHEAVLVAHNAYFDIGFLTSELSRIDLPPLETPVIDTLALARRYI 147 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSG 155 +Y+ +L L + P HRA+ D + L+DI+ G Sbjct: 148 TARRYNLTSL--ATNLGEKAP----SHRAMSDVVALRPVFEHLLDILYRKG 192 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 22/159 (13%) Query: 4 IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL IVEIA V + G++V+ + LV P R P +H IT M++ Sbjct: 39 VVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEMLSG 96 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108 P DV I VAHNA F+ + + P +CT++LAR++ Sbjct: 97 APTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQVLA 156 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + ++ + + H AL D TA LL Sbjct: 157 APNFQLVSCCTVYGIELHDA-----HTALGDTRATAQLL 190 >UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orientia tsutsugamushi RepID=A5CE47_ORITB Length = 222 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 24/161 (14%) Query: 4 IIDTETCGL---QGG-IVEIASVDVIDG--KIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL QG I+EI +V++ +I N + + P+R IS +A +H ++ Sbjct: 6 VLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRDF 65 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWIC-TMKLAR 104 ++DKP +++ + + HNA+FD + L +P + T+ LAR Sbjct: 66 LSDKPKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDTLTLAR 125 Query: 105 RLWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITA 144 + +P + + AL YK R + T H H AL D + A Sbjct: 126 KRFPKERVNLDALCYKFR---IDTSDR-HLHGALKDAKLLA 162 >UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root RepID=CP81_BP186 Length = 194 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 IDTET GL G EI + +ID ++ LV+P +PI +A AIH IT+ MV P Sbjct: 22 FIDTETTGL-GDDAEIVEICLIDSAGFIMLNTLVKPTKPIPAEATAIHGITDEMVMYAPT 80 Query: 64 IEDV---IPHYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPGIKYSN 114 +D+ + + +V +NA +D R++ + + + C R + Y+ Sbjct: 81 WKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYFLNERSACAMMLYAE 140 Query: 115 M----ALYKTRKLNVQTPPGLHH--------HRALYDCYITAALLIDIMNTSG 155 +K K + H HRAL DC +T +ID + G Sbjct: 141 YRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMTLG-IIDALAKGG 192 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 54.3 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 18/146 (12%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ID ET G ++E+A+V DG+ + S L+ P P+ + + I AM+A K Sbjct: 9 IDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAMLAGK 68 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPGI 110 P IE+V+P + G VAHNA FD R +P T +LAR P Sbjct: 69 PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVALPLA 128 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRA 136 + +A + P HHHRA Sbjct: 129 RNHRLATLA----ELLGLPLEHHHRA 150 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 27/172 (15%) Query: 4 IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET G I E +V V G++V + LVR I P + IT+AM+A Sbjct: 54 VFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAMLAT 113 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPG-EWICTMKLARRL-- 106 P + +V+P + VAHNA FD RV +P E + T +LARR+ Sbjct: 114 APPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRIVT 173 Query: 107 ---WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P K S++A R +T P HRAL D T +L + G Sbjct: 174 RDESPNNKLSSLA----RLFRARTEP---CHRALADARATVDVLHGLFERLG 218 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 355 7e-97 UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ... 272 5e-72 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 247 2e-64 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 222 9e-57 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 196 3e-49 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 194 1e-48 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 193 4e-48 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 191 2e-47 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 190 3e-47 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 190 3e-47 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 189 6e-47 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 188 1e-46 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 187 2e-46 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 186 4e-46 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 184 1e-45 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 184 2e-45 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 184 2e-45 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 183 3e-45 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 183 4e-45 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 183 4e-45 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 183 4e-45 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 183 5e-45 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 181 1e-44 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 181 2e-44 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 180 2e-44 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 180 3e-44 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 180 3e-44 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 180 4e-44 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 179 6e-44 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 179 6e-44 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 178 1e-43 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 178 1e-43 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 178 1e-43 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 178 1e-43 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 177 2e-43 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 177 2e-43 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 177 2e-43 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 177 2e-43 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 176 4e-43 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 176 4e-43 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 176 4e-43 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 176 5e-43 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 176 6e-43 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 176 7e-43 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 176 7e-43 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 175 1e-42 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 175 1e-42 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 175 1e-42 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 174 1e-42 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 174 1e-42 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 174 2e-42 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 174 2e-42 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 173 4e-42 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 173 4e-42 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 173 4e-42 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 173 4e-42 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 173 5e-42 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 173 5e-42 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 172 7e-42 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 172 7e-42 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 172 9e-42 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 171 1e-41 UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae... 171 2e-41 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 171 2e-41 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 171 2e-41 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 170 3e-41 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 170 3e-41 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 170 3e-41 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 170 3e-41 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 170 3e-41 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 170 3e-41 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 169 4e-41 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 169 4e-41 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 169 5e-41 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 169 5e-41 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 169 7e-41 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 169 7e-41 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 169 8e-41 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 168 1e-40 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 168 1e-40 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 167 2e-40 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 167 2e-40 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 167 2e-40 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 167 2e-40 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 167 2e-40 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 167 2e-40 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 167 3e-40 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 167 3e-40 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 166 4e-40 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 166 4e-40 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 166 6e-40 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 166 7e-40 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 165 8e-40 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 165 8e-40 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 165 1e-39 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 164 1e-39 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 164 2e-39 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 164 2e-39 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 164 2e-39 UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry... 164 2e-39 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 164 2e-39 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 163 3e-39 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 163 3e-39 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 163 3e-39 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 163 4e-39 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 163 4e-39 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 163 4e-39 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 163 4e-39 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 162 5e-39 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 162 5e-39 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 162 5e-39 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 162 6e-39 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 162 7e-39 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 162 9e-39 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 162 9e-39 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 162 1e-38 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 162 1e-38 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 162 1e-38 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 161 1e-38 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 161 1e-38 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 161 1e-38 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 161 1e-38 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 161 1e-38 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 161 2e-38 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 161 2e-38 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 161 2e-38 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 161 2e-38 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 161 2e-38 UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 T... 161 2e-38 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 161 2e-38 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 161 2e-38 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 160 2e-38 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 160 3e-38 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 160 3e-38 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 160 3e-38 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 160 3e-38 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 160 3e-38 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 160 4e-38 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 160 4e-38 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 160 4e-38 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 160 4e-38 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 159 5e-38 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 159 5e-38 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 159 6e-38 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 159 7e-38 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 159 8e-38 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 159 9e-38 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 159 9e-38 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 158 1e-37 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 158 1e-37 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 158 1e-37 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 158 1e-37 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 158 1e-37 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 158 2e-37 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 157 2e-37 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 157 2e-37 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 157 2e-37 UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring... 157 3e-37 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 157 3e-37 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 157 3e-37 UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID... 157 3e-37 UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro... 157 3e-37 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 157 3e-37 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 157 3e-37 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 156 4e-37 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 156 5e-37 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 156 5e-37 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 156 5e-37 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 156 5e-37 UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom... 156 6e-37 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 156 7e-37 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 156 7e-37 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 155 8e-37 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 155 8e-37 UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acin... 155 9e-37 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 155 1e-36 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 155 1e-36 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 155 1e-36 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 155 1e-36 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 155 1e-36 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 154 1e-36 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 154 2e-36 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 154 2e-36 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 154 2e-36 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 154 2e-36 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 154 2e-36 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 154 2e-36 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 154 2e-36 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 154 2e-36 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 154 3e-36 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 154 3e-36 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 154 3e-36 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 154 3e-36 UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64... 153 3e-36 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 153 3e-36 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 153 3e-36 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 153 4e-36 UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto... 153 4e-36 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 152 5e-36 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 152 8e-36 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 152 8e-36 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 152 8e-36 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 152 8e-36 UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 T... 152 1e-35 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 152 1e-35 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 152 1e-35 UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick... 151 1e-35 UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 T... 151 1e-35 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 151 2e-35 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 151 2e-35 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 151 2e-35 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 151 2e-35 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 151 2e-35 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 150 2e-35 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 150 3e-35 UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinet... 150 3e-35 UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria... 150 3e-35 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 150 4e-35 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 149 4e-35 UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD... 149 4e-35 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 149 4e-35 UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac... 149 5e-35 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 149 5e-35 UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn... 149 6e-35 UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp.... 149 7e-35 UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro... 149 8e-35 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 149 9e-35 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 149 9e-35 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 148 1e-34 UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2... 148 1e-34 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 148 1e-34 Sequences not found previously or not previously below threshold: UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 169 4e-41 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 166 6e-40 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 165 1e-39 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 164 1e-39 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 163 4e-39 UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4... 154 2e-36 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 154 3e-36 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 153 4e-36 UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant... 152 6e-36 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 152 8e-36 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 151 2e-35 UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant... 151 2e-35 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 150 3e-35 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 150 3e-35 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 150 3e-35 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 149 5e-35 UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam... 149 6e-35 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 149 7e-35 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 148 1e-34 >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 355 bits (911), Expect = 7e-97, Method: Composition-based stats. Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD Sbjct: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 Query: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT Sbjct: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 >UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 Tax=Enterobacteriaceae RepID=A8GD51_SERP5 Length = 222 Score = 272 bits (697), Expect = 5e-72, Method: Composition-based stats. Identities = 134/218 (61%), Positives = 163/218 (74%), Gaps = 2/218 (0%) Query: 2 LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 LR+IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI +AMAIH ITE MV K Sbjct: 3 LRVIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGK 62 Query: 62 PWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTR 121 P I I Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N L Sbjct: 63 PRIAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYAL 122 Query: 122 KLNVQTPPG--LHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKY 179 L+VQ P L+ HRALYDCY+TAALL I+ SGWT EQMA IT +P L+ F FGKY Sbjct: 123 NLDVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKY 182 Query: 180 RGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 RG+ + VA+ DPGYLRW+ +++ +SP+++ TLK+YL Sbjct: 183 RGQEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 6/221 (2%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 MLR+IDTET GL+GG +VE+ASVD++DG I NPMS LV+P I +AMAIH ITE M Sbjct: 1 MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60 Query: 58 VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIK-YSNMA 116 V P + +VI Y G++ YVAHNA FD+ LP++ WICT KLAR L P K +SN Sbjct: 61 VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120 Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176 L + L + P GL+ HRALYDCY+TA LL+ + + WT +M I+ PSL+ F Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180 Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 GK++G + +++A+ +PGYLRWL N D ++ T H+L Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 222 bits (566), Expect = 9e-57, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 22/232 (9%) Query: 2 LRIIDTETCGL--QGGIVEIASVDV---IDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 ++DTET GL +G +VE+A V+V + +IV S LV P PI P+A A+H IT+ Sbjct: 8 FVVVDTETTGLPPEGRVVELALVEVGLECEPQIV--YSALVDPGCPIPPEASAVHHITDR 65 Query: 57 MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KY 112 VA KP + V P Y G VAHNA FDR +LPE WIC+ +LA+ LW K+ Sbjct: 66 DVAGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKH 125 Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-----SGWTAEQMADITGR 167 SN L ++V+ HRAL D +TA + + +++ Sbjct: 126 SNQVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAES 182 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 P + T FGK++G + +V YL W NL +SP+LR +++ LE Sbjct: 183 PIEVQTMPFGKHKGMPLKEVP---LDYLDWALRNLQDLSPDLRWSMQRVLEQ 231 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 22/235 (9%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRIT 54 ++R+ID ET G Q ++E VDV IVNP L +P PI P MA+H IT Sbjct: 8 IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67 Query: 55 EAMVADKPWIEDVIPHYYGS----EWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110 + VAD P V ++ ++ AHNA F++ +WICT K A +WP Sbjct: 68 DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127 Query: 111 KYS-NMALYKTRKLNV-----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 N AL ++ HRAL D Y+TA +L++++ T E++ I Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTAHILLELLKHK--TPEELVQI 185 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + P+L+TT FGK++G S+ YL W+ N D + + + + +++L+ Sbjct: 186 SEYPALLTTLRFGKHKGMKYSEAPT---DYLDWIVNKSD-LDEDTKFSSRYWLKK 236 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 20/166 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL Q I EI +V V +G+IV+ S V P I + + IT+ MV Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMV 481 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P +E V+ + VAHNA+FD + + + +I T++L R+++ Sbjct: 482 KDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMF 541 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P + +Y + K K+ ++ +HHRA+ D TA + + +N Sbjct: 542 PELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCIN 582 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 18/166 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V + + KIV+ V P PIS + I E+MV Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMV 447 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P IE+V+P + VAHNA+FD + + + T++L+R L+ Sbjct: 448 KDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLY 507 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +K + LHHHRA+ D TA + I ++ Sbjct: 508 QDLKNYKLDTLAEF----FEVKLLHHHRAVEDAKATAEIFIKMLEK 549 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++DTET G I+E+A+V V G+IV + L+ P R + P + IT AM+ Sbjct: 8 FVVVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLV 67 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107 +P ++V+P + G VAHN +FDR++L +CT++LARRL Sbjct: 68 GRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLL 127 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-----TAEQMA 162 PG+ + P + HRAL D TA +L+ ++ + T E + Sbjct: 128 PGLPAKGLDGLIRFY----QIPVENRHRALGDAEATAHVLLRLLEEARRQYGIDTLEALL 183 Query: 163 DITGR--PSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + P + R + + E YL Sbjct: 184 TFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYL 218 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 18/169 (10%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI +V ++D KIV+ + L+ P+ PI + + IT MV Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMV 461 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D P I+ V+P + G +AHNA FD + + + +I T+ AR L Sbjct: 462 KDMPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALE 521 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P +K + T+K NV +HHRA D T + I ++N Sbjct: 522 PHLKNHKLDTL-TKKYNVNL---FNHHRACDDARATGEVFICMVNNLEQ 566 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 23/174 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V + DG+IV+ L++P R IS ++ I IT+ M+ Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 +K IE+V+P + G + VAHNA+FD R L + +I T+ LA+ L Sbjct: 418 ENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL 477 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI---DIMNTSGWT 157 YS ++ + L HHRAL D +TA + + ++M G T Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIGIT 526 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 32/234 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V V GK+++ S V+P I + + IT MV Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMV 444 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P IE VI + VAHNA FD L ++ + T+ L+R L Sbjct: 445 SRAPDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRAL 504 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQMA 162 P + + R LNV+ +HHRA+ D T+ + I+ + N T + Sbjct: 505 LPDLSNHKLNTL-ARHLNVRLD---NHHRAVEDARATSEIFINFLSNIKNEGIETVPGIN 560 Query: 163 DITGR------PSLMTTFTFGKYRGKAVSDVAER-DPGYLRWLFNNLDSMSPEL 209 ++ + P+ T F K + + + D+ +L + + + L Sbjct: 561 RLSTKINWRELPTYHTVI-FAKNK-QGLKDIYRLVSESHLNYFYRKPRILKSHL 612 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 21/168 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V + G+IV+ S L+ P RPI I IT+ V Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 A++P I++VI + G VAHNA FD + ++ I T+++AR L Sbjct: 487 ANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDL 546 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +P + KY L KT L ++ HHRA+ D TA + I ++ Sbjct: 547 FPDLKKYGLGDLNKTLGLALE-----KHHRAVDDSQATANMFIIFLDK 589 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A+V V DG+I++ P P+S M + IT+ MV Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMV 488 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 D P ++V+ + G VAHNASFD L ++ I T++LAR L Sbjct: 489 KDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFL 548 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +P +K + +K +++ HHRA+YD T LL+ ++ + Sbjct: 549 YPDLKNHRLNTL-CKKFDIELT---QHHRAIYDAEATGHLLMRLLKEA 592 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 186 bits (474), Expect = 4e-46, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 18/161 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + DG+IV+ S V P I + + IT+ MV Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMV 494 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P I++V+P + G+ VAHNA+FD + + + + T+ LAR L+ Sbjct: 495 NGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLY 554 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 P +K + L + L + +HHRA+ D TA +L Sbjct: 555 PDLKKVKLNLV-AKHLGISLE---NHHRAVDDAKATAEILK 591 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 18/166 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + +GK+V+ S V P+R I + + + I + MV Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV 472 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P IE+V+P + VAHNA+FD + + + T+ L + L+ Sbjct: 473 KDAPKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLY 532 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 P +K + + + L + P L+HHRA+ D T +L+ Sbjct: 533 PELKRYKLNVV-AKHLGI---PLLNHHRAVEDAKTTGDILLKAFED 574 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET G I+EI +V + +++ S V P+ PI + + IT+ M Sbjct: 424 IYVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEM 483 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106 VA+ IE V+P + VAHNA FD + + + I T+ LAR L Sbjct: 484 VANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTL 543 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P ++ Y L K + ++T HHRA+ D TA + +N Sbjct: 544 LPELRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLN 585 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 20/210 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V +GKI++ S V P+ PI + + I + MV Sbjct: 409 YVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMV 468 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P IE+++P + VAHN+ FD + E I T+ ++R L Sbjct: 469 IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLI 528 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 G+ +Y + K + + HHHRA+ D TA + + + D Sbjct: 529 IGLGRYKLDNVAKALGIVLD-----HHHRAVDDAECTALIFLKLCKMLEGKGIDNLDELN 583 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 R + K + + G + Sbjct: 584 RQGKQSKNLIDKLPAHHAIILVKNQVGRVN 613 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 23/194 (11%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL ++EIA+V V G+IV+ + L+ P+R + P+ + + IT MV Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMV 486 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A +P + + + + VAHNA FD L + I T+ LAR L Sbjct: 487 AGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVL 546 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162 +PG K + T+K +V ++HHRAL D TA + + ++ + M Sbjct: 547 YPGEKNYKLKTL-TQKFSVDL---VNHHRALADSEATAKVFVHMLKDAKARGIHNLLDMN 602 Query: 163 DITGRPSLMTTFTF 176 + G+ + F Sbjct: 603 HLRGQIDISRVRPF 616 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 28/212 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G++ I+EI +V V DGK V+ S L+ P +SP + IT+ M+ Sbjct: 5 YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEML 64 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 DKP+IE+V+P + G + + HN FD L + I T+K+AR+ Sbjct: 65 KDKPFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTL 124 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 G++ + N +HHRA D +T+ L +M G T Sbjct: 125 KGLESRGLE----YLCNYYGIADENHHRAFNDAEVTSKLYNVLMEKFG---------TES 171 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199 P L + ++ K + + +R YL+ L Sbjct: 172 PGLFEPYQL-VFKAKKMQPITDRQKKYLKDLM 202 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 22/192 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M IID ET G I+EIA KI + L+ P+R I ++ I M Sbjct: 2 MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106 VAD P DV + +VAHN +FD L + + +CT++L+R++ Sbjct: 62 VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163 +PG+ YS L + ++VQ + HRA D T LL ++ +T G+ + + Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKK 176 Query: 164 ITGRPSLMTTFT 175 + L Sbjct: 177 NSKETLLPANLP 188 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 30/231 (12%) Query: 6 DTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 DTET G++ ++E+A D + + L+ P PI P+A AIH IT+ MVA+ P Sbjct: 7 DTETTGIKADRDYVIELAVYDPVGNR---TFERLINPGVPIPPEATAIHHITDEMVANAP 63 Query: 63 WIEDVIPHYY----GSEWYVAHNAS-FDRRVLPE---------MPGEWICTMKLARRLWP 108 ++I + G +AHN FD L P +++ T+K ARR Sbjct: 64 SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168 + + + + + HRAL D + + +++ + + + +P Sbjct: 124 DLPRHTLQFLR----GIYGIAENNAHRALDDVIVLHQVFSAMLDDL--SIAEAYALMNQP 177 Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + FGK++G + V Y++WL PE L L+ E Sbjct: 178 KDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFEK 224 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 183 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 20/178 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I+E+ +V G+IV+ VRP +P+ P+ + IT M+ Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDML 513 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 P + + + G VAHNA FD L E + T+ LAR + Sbjct: 514 EGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAV 573 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 P ++ ++A T++L V P + HHRA D A +L+ ++ + E +AD+ Sbjct: 574 LPHMRSHSLA-ALTKELQV---PLVDHHRADADAKTAAMVLMKLLERA-EGVETVADL 626 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 23/182 (12%) Query: 3 RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + D ET G I+EI +V + +GKI++ M V P PI + + I ++MV Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVM 578 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 D IE+V+P + VAHNA FD + I T+ L+R L P Sbjct: 579 DAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLP 638 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMADI 164 + ++ + K K+ + LHHHRA+ D TA + ++I+ G ++ + D Sbjct: 639 RLNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYLKELEILEQRGVSSLEEIDS 693 Query: 165 TG 166 Sbjct: 694 LE 695 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 21/238 (8%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + I+DTET G + I++++ + + + +I LV+P PIS +AMA+H IT MV Sbjct: 3 IVILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMV 62 Query: 59 ADKPWIEDV-----IPHYYGSE-WYVAHNASFDRRVLPEMPG----EWICTMKLARRLWP 108 DKP I+ + E V HNA FD +L + + I T ++ + L P Sbjct: 63 EDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIP 122 Query: 109 GIKYSN------MALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 K+S + LYK K + + ++ H AL D + L ++ E++ Sbjct: 123 EGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLVTNFEKNVEEL 182 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 ++T +P L F GKY+ + + DV +DP Y+ ++ +L + P+++ +++H+LEN Sbjct: 183 VELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++DTET GL QG ++EI +V V +G+I ++ L+ PIS A +H I+E M Sbjct: 4 VIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQM 63 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 +A +P ++V P + G+ VAHNA+FDR + + W CT++L+RR Sbjct: 64 LAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRK 123 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P + + + P + HRAL D + A + ++++ Sbjct: 124 LPRLMNHKLETVYKHLFG-ELPEEVQRHRALDDARMAARVWVELLK 168 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 15/160 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EIA+V + G I LV P RPI P + I++AMV Sbjct: 6 YVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMV 65 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110 + P + +V+P + V HN +FD L + G + T+ L+R L+P + Sbjct: 66 REAPPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCL 125 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + Y ++ L ++ HHRAL D TA LL ++ Sbjct: 126 ASHRLD-YMSKYLTLE---ATGHHRALDDVLTTARLLENL 161 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 21/172 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI +V VID K+V+ S L+ P+R + + I+ MV Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMV 663 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P +VI + +VAHN +FD +CT++ R+ + Sbjct: 664 EDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRKYY 723 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 PG YS L K L++ +HHRAL D A LLI ++N T Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI-MVNEKKHTV 769 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 23/191 (12%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V+ G+I S V P+ PI + + I + MV Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV 534 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P IE ++P + G VAHNA FD + E I T+ LAR L Sbjct: 535 IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILL 594 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMAD 163 P + ++ + K ++++ +HHRA+ D TA + + +++ G + Sbjct: 595 PQLNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVN 649 Query: 164 ITGRPSLMTTF 174 G+ S T Sbjct: 650 QMGQASPETIM 660 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 179 bits (455), Expect = 6e-44, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 30/217 (13%) Query: 2 LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52 ++D ET G + I EI +V V DG ++ + LV P R I PQ M + Sbjct: 40 FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTG 99 Query: 53 ITEAMVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPGE---------WI 97 IT AMV+D P I+ V+P + VAHNA FD L + + Sbjct: 100 ITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVL 159 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-W 156 CT++LARR+ + ++ L +L HRAL D T +L ++ G Sbjct: 160 CTVRLARRVLSREEAPSVRLASLARL--FAVTTQPTHRALDDARATVDVLHALIERVGNQ 217 Query: 157 TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 AD+ G + T + R + +++ R PG Sbjct: 218 GVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPG 251 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 179 bits (455), Expect = 6e-44, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 23/199 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G GI EIA + + DG K++ L+ P++ I + I +M Sbjct: 3 FAIVDIETTGGAASTCGITEIA-ILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSM 61 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 V+D P E++ + +VAH+ +FD + E + +CT++LAR++ Sbjct: 62 VSDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKI 121 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADI 164 PG+ YS + +T+K+ P L HRA+ D TA L ++ T + + Sbjct: 122 IPGLSSYSLGRICETQKI-----PILARHRAMGDARATAILFDQMLKKDSQTVFQALKKN 176 Query: 165 TGRPSLMTTFTFGKYRGKA 183 +G L F KYR Sbjct: 177 SGEAFLPPNFPITKYRKIP 195 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 22/193 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI + V GKI + LV P+ I + + I IT MV Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMV 408 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P IE+V+P + V N FD + E ++ T+ +AR L+ Sbjct: 409 KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALF 468 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMAD 163 +K ++ RKL + P +HHRA D TA + I + M G + Sbjct: 469 SDMKKFSLDKI-ARKLEI---PAFNHHRASDDARATAQIFIKMFKMIMEEDGINLSTINK 524 Query: 164 ITGRPSLMTTFTF 176 + F Sbjct: 525 LKSHWPKSKHEYF 537 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 19/188 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + +GK+++ S V P I + + + I + MV Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMV 463 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D I+ V+P + VAHNA FD + E +I T++ ++ L Sbjct: 464 KDSDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILV 523 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMADITG 166 +K N+ T++ N++ +HHRA+ D TA L +++ E++ D++ Sbjct: 524 DDVKRFNLDTL-TKRFNIKLE---NHHRAVDDANATAELFKKLLSLVSANGVEKLTDVSE 579 Query: 167 RPSLMTTF 174 + Sbjct: 580 KLEKKPKI 587 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 20/162 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI V ++ GK V+ L+ P R I + I++ MV Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMV 602 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 AD P +V I + +VAHN +FD + + +CT++ RR Sbjct: 603 ADAPLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTH 662 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 PG+ YS L K ++++ HHRAL D A LL Sbjct: 663 PGLSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELLK 699 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 24/199 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ ++EI++V V +GKIV+ S LV P RPI A +++ I++ MV Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMV 76 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARR 105 + E V+P + G + HN A FD + L + ++I T+ +A+ Sbjct: 77 ENARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKL 136 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD- 163 +P K+ ++ L + ++ + HRAL DC + + + SG T+ + + Sbjct: 137 CFPEWKHRKLSDLAEHYGISTKG-----AHRALADCRMNQQVFELMAKESGGTSAKQTEE 191 Query: 164 -ITGRPSLMTTFTFGKYRG 181 I R L G++ G Sbjct: 192 KICPRCGLALKKRNGRFGG 210 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 26/216 (12%) Query: 2 LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52 ++D ET G + I EI +V V G ++ + LV P I PQ + + Sbjct: 43 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTG 102 Query: 53 ITEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTM 100 IT AMV + P I+ V+P + G VAHNA FD L + +CTM Sbjct: 103 ITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTM 162 Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAE 159 +LARR+ + ++ L +L HRAL D T +L ++ G Sbjct: 163 RLARRVLSRDEAPSVRLAALARL--FAVASNPTHRALDDARATVDVLHALIERVGNQGVH 220 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 A++ R L + + + R YL Sbjct: 221 TYAEL--RSYLPNVTQAQRCKRVLAETLPHRPGVYL 254 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 22/197 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ I+EI++V V G + + S LV P R I QA ++ IT+ MV Sbjct: 15 YTVFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMV 74 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVL---------PEMPGEWICTMKLARR 105 ++ P I + + + G + V HN SFD + + + ++I T+ +AR+ Sbjct: 75 SEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARK 134 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 P +K+ + L + ++ + HRAL DC + ++ + + Sbjct: 135 CLPELKHHRLTDLAEHFGISSKG-----AHRALNDCVMNQKCFEEMAKLQKKSVVFVCPK 189 Query: 165 TGRPSLMTTFTFGKYRG 181 G + +G++ G Sbjct: 190 CGGEMIRRNGRYGEFWG 206 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 35/237 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL+ I+EIA+ + +I++ + LV P+ I P I+ I MV Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMV 190 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P I++V+P ++ G VAHNA FD + L + I T+ ++R+L+ Sbjct: 191 KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLF 250 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 I+ + K LN+ HRAL DCY+ + ++ +T + +A+I Sbjct: 251 SEIENHKLGTIKEY-LNIDVQDS---HRALPDCYVCGQIYLEY-STKEKNKKALANIKLH 305 Query: 168 PSLMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFNN----LDSMSPELRLTLK 214 + G + + S V E +D Y+R+ F + + + LRL LK Sbjct: 306 SDI------GLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 177 bits (449), Expect = 2e-43, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 21/172 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G Q + E+ V V++G+IV+ L+ P R I + I+ MV Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMV 632 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 ++ P +DV I + +VAHN +FD +CT++++R+ Sbjct: 633 SNAPVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYL 692 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 PG YS L ++++ +HHRAL D A + ++ T+ Sbjct: 693 PGHSSYSLGKLCAALDIDLE-----NHHRALDDAKAAAHVF-RLIQEKRQTS 738 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 22/174 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + + D ET GL I EI +V + + +IV S V P PI + IT+ MV Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMV 650 Query: 59 ADKPWIEDV----IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 AD P EDV + G+ AHNA FD + + T+ +A+ Sbjct: 651 ADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAA 709 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 GIK Y + K KL HHRA+ D + + + I+N + TA+ Sbjct: 710 LKGIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 27/187 (14%) Query: 2 LRIIDTETCG-----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 ++D ET G + I +IA+V V DG+I+ S + P R I P + I E+ Sbjct: 5 YVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDES 64 Query: 57 MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 MV P +DV P +VAHN FD L E+ + T++LA+ Sbjct: 65 MVKQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 124 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P Y L K +L P HRA D TA L + +N T + Sbjct: 125 ILLPTADSYKLRDLAKQHELEHDQP-----HRADSDALATAELFLQFLNEIEKLPLVTLQ 179 Query: 160 QMADITG 166 + +++ Sbjct: 180 SLYELSD 186 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%) Query: 3 RIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL G I EI +V + DG +V+ S LV+P RPI P ++ IT AMVAD Sbjct: 30 VVVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 89 Query: 61 KPWIEDVIPHYY--------GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLA 103 I V+ H+ S VAHNASFD L P + T+ LA Sbjct: 90 AAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALA 149 Query: 104 RRLWPG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT- 157 R P ++ + + T P HRAL D TA + ID++ +G T Sbjct: 150 RLALPRPLVRNHKLGTVASY-FGTATVPE---HRALGDARATAEILLGFIDLLAAAGATD 205 Query: 158 AEQMADITGRP 168 E + +T + Sbjct: 206 VEDLIVLTDQA 216 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 20/191 (10%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + D ET G I+EI +V + G IV+ S + P+ PI + IT+ MV Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYHIQKLTSITDEMVI 557 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 IE+++P + + VAHNASFD + + + + T+ LAR L Sbjct: 558 GSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLN 617 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADITGR 167 + + + L++ +HHRA+ D TA + + + E +A I R Sbjct: 618 HLNNFKLDTV-AKALSISLE---NHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQI-NR 672 Query: 168 PSLMTTFTFGK 178 +T K Sbjct: 673 AEEVTPDVIKK 683 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 176 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 29/204 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G ++EI++V V GK+V S LV P RPI A ++ I++ MV Sbjct: 17 YVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMV 76 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105 A++P V+P + G + V HN FD + L ++ +++ T+++A+ Sbjct: 77 ANEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKL 136 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-------SGWT 157 +P ++ ++ L + ++ + HRAL DC + + + + Sbjct: 137 CFPEWRHRRLSDLAEHYGISTRG-----AHRALTDCKMNQQVFEYLAKELEKMPAAKKQS 191 Query: 158 AEQMADITGRPSLMTTFTFGKYRG 181 E++ G P FG++ G Sbjct: 192 KEKICPECGLPMKKRNGRFGEFWG 215 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 21/192 (10%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++DTET G I+EI V++++ + + V P+R I A +H IT+A Sbjct: 4 LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG-----------EWICTMKLA 103 VA+ P +++ + G + V HNA FD R L I T+ LA Sbjct: 64 VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 RR +PG + AL K ++ G H AL D ++ A + +++M + ++ E AD Sbjct: 124 RRKFPGSTVNLDALCKRLGVDNS---GRTFHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180 Query: 164 ITGRPSLMTTFT 175 +GR + + Sbjct: 181 ESGRIAQPSDSP 192 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 21/169 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A V + +GK V+ S + P I + I + MV Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 D P +E + + G VAHNA FD + P++ + T++LAR L Sbjct: 481 KDAPELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFL 540 Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 P +K + L K+++ +HHRA+ D +L ++N + Sbjct: 541 HPTMKNHRLNTLSAKYKVSLD-----NHHRAVDDSVALGGVLFGLINDA 584 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 24/214 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET GL ++E+ +V+++DG+I L P P+S + AI I+ AM Sbjct: 544 FVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAM 603 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106 + D P + +VI + VAHNA FDRR L E +CTM+L +R Sbjct: 604 LVDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRA 663 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +PG+ +A V P + HRAL D TA L + + + T Sbjct: 664 YPGLGSYKLAFL-AEHAGVALPDAM--HRALADAMATAELFLVMREREACPPPE----TQ 716 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDP--GYLRWL 198 P++ + A R P G+ RWL Sbjct: 717 PPAIAEPAADRAVLASTLPPTAPRQPASGWRRWL 750 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 20/189 (10%) Query: 2 LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +ID ET G QG + EI + V + +IV+ S L+ P+ I A+ IT+ MV Sbjct: 8 FTVIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVT 67 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 D P DV I +VAHN +FD L + + +CT++L+R+L P Sbjct: 68 DAPRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIP 127 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADITG 166 G+ YS L ++ +++ L HRA D T L + ++ S E + Sbjct: 128 GLPSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFLN 182 Query: 167 RPSLMTTFT 175 + S T Sbjct: 183 KSSREATLP 191 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 20/170 (11%) Query: 1 MLRIIDTETCG-LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G L+GG I EI V V GK+++ + LV P R I ++ I+++M Sbjct: 566 IYSVVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSM 625 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V++ P D+ + +VAHN +FD + + +CT+ +R+ Sbjct: 626 VSNAPVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCTVVESRKA 685 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 + G+K YS L K LN+ + HHRAL D TA LL+ I + Sbjct: 686 FAGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQKSQS 730 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 19/168 (11%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G Q + EI +V + +G+I++ L+ P+R I P + I+ AM Sbjct: 544 VYTVVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAM 603 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 V D P D+ + +VAHN +FD L +CT+ RR Sbjct: 604 VRDAPRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRH 663 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +PG+ + +R+ ++ +HHRAL D A LL ++N Sbjct: 664 FPGLAAYGLGPL-SREFGIELK---NHHRALSDAMAAAELL-KLINER 706 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 23/237 (9%) Query: 1 MLRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ML +D ET GL+ I I + V + I + LV + IS +A +I+ IT M+ Sbjct: 1 MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59 Query: 59 ADKPWIED------VIPHYYGSEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108 DKP +D + + S +AHN +FD ++L + G+ + T+++ + L P Sbjct: 60 KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119 Query: 109 G--------IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 ++Y +K + + H AL D L ++ ++ Sbjct: 120 ECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIKEH--DE 177 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 + ++ + L+ F FGKY+G+ + +++ D GYL W+ ++ + +LR +++ L Sbjct: 178 LVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIRGVL 234 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 20/167 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI +V ++DG I S L+ P I + + RIT A+V Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 ++P IE+V P + VAHNA FD + + + T+ AR Sbjct: 461 ENEPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATV 520 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 K N+A L K +++ + HRA+ D TA L I ++N Sbjct: 521 KDTKKFNLATLCKKFGVSL-----VGAHRAVNDAEATAHLFIKLINK 562 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 21/176 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+E+A+V + DG++V + P+RP+S + IT MV Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMV 484 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 +V+ + G HN SFD L + I T++L+R L Sbjct: 485 HGAKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRML 544 Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 P K + +L K K+N++ HHHRA D T LL + + + + Sbjct: 545 HPEYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLLYKLEKEAAENYDMV 595 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 24/195 (12%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET GL I+EI ++ + +++ S V+P++ +S ++ ITE M Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-----EMPGEW----ICTMKLARR 105 +++ I++V+P + VAHNASFD + G+W I T+ LA+ Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQM 161 L+ YS + K KL HHRA D +TA +L + ++ Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVLKKFVQLAKKRGVQNVNEL 591 Query: 162 ADITGRPSLMTTFTF 176 + +L + F Sbjct: 592 EKLRKNQNLDSLKPF 606 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 26/185 (14%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 IID ET G I+++ V + +GKIV+ S P+R I P + ITE M Sbjct: 5 FVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQM 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105 VAD P + + ++VAHN SFD + LP G I T++LAR Sbjct: 65 VADAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARI 124 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++P Y L K ++ P H+A D +TA L I ++N T + Sbjct: 125 VFPTAESYKLGDLAKQLHIDHDQP-----HQADSDAEVTAKLFIALLNRLRQLPFITLQH 179 Query: 161 MADIT 165 + ++ Sbjct: 180 LKRLS 184 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 28/236 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +D E GL I+E A+ +++ M L+ PDR IS ++ IHRI++AM Sbjct: 8 IFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAM 67 Query: 58 VADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE----------WICTMKLA 103 + D+P I +V P ++ V H+ FD +VL + I T++LA Sbjct: 68 LKDQPRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLA 127 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + S AL + P +HRA+ D I + T EQ+ Sbjct: 128 KEYGDSPNNSLEALAVHFNV-----PYDGNHRAMKDVEININIFKHFCKRF-RTIEQLKQ 181 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + +P M GK++G+ S++ YL+W + +L +++H +++ Sbjct: 182 VLSKPIKMKYMPLGKHKGRCFSEIP---LSYLQW--ASKMDFDADLLFSIRHEIKH 232 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 33/223 (14%) Query: 2 LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G I+EI V + +I++ + P +PI P + I++ Sbjct: 4 FVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGISDDD 63 Query: 58 VADKPWIED---VIPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 VAD P + I + +AHN +FD L + + + T++L+R Sbjct: 64 VADAPLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQVLDTVELSRI 123 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L+P Y L L P HRAL D Y+TA L +M+ Sbjct: 124 LFPTAPGYKLSQLSDHFNLQHDDP-----HRALSDAYVTAKLFQKLMDKINQLP------ 172 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207 T + K G +SD+ E L L ++D S Sbjct: 173 -----YETIEQWLKLEGAFISDIKEILLNRLDELAFSIDQDSA 210 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 173 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 18/173 (10%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL +EI +V + DGK+V+ L+ P IS + I+ AM Sbjct: 18 VIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAM 77 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 +AD P E+V + G VAHNASFD+R L G++ C+M +ARRL Sbjct: 78 LADAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRL 137 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 + + + K HRAL D +TA+L + ++ + Sbjct: 138 YQAAPNHKLGSLVSYK---NIQHDGVFHRALADSEMTASLWLAMLEDLQQDYQ 187 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 173 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 20/167 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57 I+D ET GL I+EIA++ V G +V+ LV+P I + IT A+ Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNAL 70 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V DKP IE+V P + + VAHNA FD L + +CT LA+R Sbjct: 71 VVDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKR 130 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L+P + ++ N+ P HRAL D +T L I++ Sbjct: 131 LFPDLPSKSLVNL-AYHFNI---PYNKKHRALEDALVTYELFKKIID 173 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 23/197 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI + + GKI++ V P++PI + + + IT+ MV Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMV 483 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D I+ V P + VAHNA FD L + ++ T+ LA+ L+ Sbjct: 484 RDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELF 543 Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163 P K Y + K + V+ HRAL D T + +D++ G + D Sbjct: 544 PDYKTYKLGRIAKNLGIKVEV-----AHRALDDVGTTVKVFNIMVDMLKERGVETLEDID 598 Query: 164 ITGRPSLMTTFTFGKYR 180 + + K + Sbjct: 599 LKAADEAARKDEYKKLK 615 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 28/212 (13%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I EI +V V G+++ LV P I + I+ +M Sbjct: 30 FCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSM 89 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP---------GEWICTMKLARR 105 VAD P +E +P + VAHNA FD L E + T +LARR Sbjct: 90 VADAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARR 149 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161 + N L K +HRAL D T +L +M G T E++ Sbjct: 150 VVSRDDAPNCKLSSLAK--AFGSTTTPNHRALSDARATVDVLHGLMERLGGVGVHTLEEL 207 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 + R S R + +++ PG Sbjct: 208 QTFSSRVSSAQR------RKRHLAEGLPHAPG 233 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 172 bits (436), Expect = 9e-42, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 29/218 (13%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I+EI ++ +G+ V + LV P++ IS IT +MV Sbjct: 24 FAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMV 83 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P I+ ++ ++ +VAHN FD + ++ W+CT +LARRL Sbjct: 84 DNAPVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRL 143 Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQ 160 P K + L K + V+ + HRA DC T LL +++ TAE+ Sbjct: 144 LPTQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELIILAQEQHGVETAEE 198 Query: 161 MADITGRPS---LMTTFTFGKYRGKAVSDVAERDPGYL 195 + + + F K R ++ + YL Sbjct: 199 LLSLQFKAIRNFKREPRHFSKIRNTVLNKFPTKSGVYL 236 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 22/170 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ ++EI++V V G++ S LV P R I P A ++ IT+ MV Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGITDKMV 84 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVL---------PEMPGEWICTMKLARR 105 A +V+ ++ G V HN SFD + L +++ T+ LAR Sbjct: 85 AGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLLLARA 144 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 P + + + L + ++ + HRAL DC++ + + + Sbjct: 145 ALPELSHHRLVDLAEHYGISAKG-----AHRALNDCHMNQKVYGKLAEEA 189 >UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae RepID=Q0G0B0_9RHIZ Length = 266 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 24/235 (10%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDV--IDGKIVNPMSHLVRPDRP-ISPQAMAIHRIT 54 ++R+IDTET GL + ++EI SVD+ + G I NPM P IS A +H+IT Sbjct: 22 IVRVIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQIT 81 Query: 55 EAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSN 114 + M+ P D + + +E Y A A FDR L + G W+CT KLA R +P ++ Sbjct: 82 DEMLVGAPPFSDAVKPF-NTETYAAQRADFDRSRLR-LTGRWLCTHKLALRAFPNVRAHG 139 Query: 115 M-ALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI----- 164 + +L K L++ Q GLH HRAL+D TA LL I ++D Sbjct: 140 LQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVLLRRIAEELTPHCHDLSDFLERAE 199 Query: 165 --TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 + P+L+ FG+++G + +V YL+WL M+ + T K L Sbjct: 200 KVSNEPALLAKLRFGRHKGIPIREVPT---DYLQWLVAEP-EMNADAVFTAKRQL 250 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 20/170 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G + I EIA V V G++ S LV P+RPI P ++ IT M Sbjct: 6 FAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDM 65 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V D+P ++ + +VAHNA FD R + E+ G +CT++ AR Sbjct: 66 VRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARA 125 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P + ++ + TR ++ HRA D TA L ++N + Sbjct: 126 ALPQLSRRSLD-HVTRYFGIEIAA---RHRAAGDALATAHALCRMLNIAS 171 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET G++ I++I +V +++G+++ LV P+R I P+ + IH I++ Sbjct: 545 YTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISD 604 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV +P IE V+P + VAHNA+FD R L + T+ L+ Sbjct: 605 DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSG 664 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 L P + ++ + + ++ H AL D TA + + ++ Sbjct: 665 VLHPNQESHQLDSIAERLGIGIE-----DRHNALGDACATAEVFLKMLPLLAQMGITTLR 719 Query: 164 ITGRPSLMTTFTFGKY 179 S T F KY Sbjct: 720 QALEASEKTYFARVKY 735 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 29/225 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L DTET G Q IVE+A+ +G LV P+ PI +A IH IT A V Sbjct: 4 LIFYDTETTGTQIDKDRIVELAA---YNGTTSESFQTLVNPEIPIPAEATKIHGITTAEV 60 Query: 59 ADKPWIEDVIPHYYG----SEWYVAH-NASFD---------RRVLPEMPGEWICTMKLAR 104 AD P + + VAH N +FD R L E I ++K A+ Sbjct: 61 ADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWAK 120 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMAD 163 + + ++ + V HRAL D + ++ + S + + Sbjct: 121 KYRTDLPQHSLQYLR----QVYGFEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLLN 176 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 T P + FGKY+GK +S+V Y+ WL + PE Sbjct: 177 ETCHPRIF-KMPFGKYKGKPLSEVP---SSYIAWLQKGDYLLQPE 217 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 19/170 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G + I EI V+V G + S LV P +PI P + I++AMV Sbjct: 6 YVIVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 A+ P ++ P + +AHNA FD L + +CT+KL+RRL+ Sbjct: 65 AEAPPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLY 124 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P K+S +L ++V P HRAL D L + G Sbjct: 125 PQHAKHSLDSLIARHGIDV---PPGMRHRALGDAEAVYVFLQTAVAELGQ 171 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 28/245 (11%) Query: 2 LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + DTET G + +++ ++ V + V L PI +AM +H IT ++ Sbjct: 4 YVLFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLE 63 Query: 60 DKPW-----IEDVIPHYYGSE-WYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPG 109 +KP + E + +AHN +FD ++ E + I T++ A+ L+ Sbjct: 64 NKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123 Query: 110 IKYSNMALYKTRKLNV---------QTPPGLHHHRALYDCYITAALLIDIMNT------S 154 + Y + Y L++ + + H A+ D + L ++ S Sbjct: 124 LPYHRLQ-YLRYALDLYKFEENEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182 Query: 155 GWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 E++ ++T P + TF FGKY+G+ + +VA+ D YL W+ +++ + +++ TL Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242 Query: 215 HYLEN 219 L N Sbjct: 243 KVLGN 247 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 21/168 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI +V V + ++V L+ P RPI + + + IT MV Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMV 622 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P ++ + G +VAHN +FD L +CT RR + Sbjct: 623 RDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRY 682 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 PG Y L + + HHRAL D A LL +++NT Sbjct: 683 PGHTSYGLGKLCAIYGIELD-----DHHRALCDARAAAHLL-NLINTK 724 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G+ I+E+ +V V+DG++ + V P PI + + I++A VA Sbjct: 31 LDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADVAGA 90 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARRLWP 108 P I++V+P + G VAH+A FD L E G T+ L R L P Sbjct: 91 PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTRALLP 150 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + +A ++ P HRA D + L + ++ + D Sbjct: 151 RLPNHRLATAARF-FDI---PTGRSHRATDDARAVSDLFLALLGVLDQIGATVLD 201 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 170 bits (431), Expect = 3e-41, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 34/216 (15%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I E+ +V V G++V + LV P PI + IT++MV Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPANITLLTGITQSMV 85 Query: 59 ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPG---------EWICTMKLA 103 A P +E+V+P VAHNA FD L + T++LA Sbjct: 86 ASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLA 145 Query: 104 RRLWP--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----SGWT 157 R + + +A P +HRAL D T +L ++ + Sbjct: 146 RAVLARGETRNHRLATLAAY----FGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSS 201 Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 E++ +T P+ + +++ +PG Sbjct: 202 VEELRAVTKPPTKAQRSR------RHLAEDLPEEPG 231 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 23/192 (11%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL GI E +V + +G++++ + V P + IS + + IT MV ++ Sbjct: 406 FDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMVRNE 465 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLW-P 108 P I+ ++P ++ VAHNA+FD L PE+ I ++ LAR + P Sbjct: 466 PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALARAILKP 525 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMADI 164 Y + ++ ++N HRA YD + + IM + + + ++ Sbjct: 526 MKSYRLGNVCRSYRVNYDDEV---AHRADYDAEVLGDVFNMMLHQIMQSGKYNLLDLCEL 582 Query: 165 TGRPSLMTTFTF 176 TG + + Sbjct: 583 TGDDVYKIVYPY 594 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G ++E+ +++ D V P+R I P A+ +H IT+ Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDK 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGE--WICTMKLAR 104 V D P ++ + + G +AHNA FDR + + GE WI T+KLA+ Sbjct: 65 VKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQ 124 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 +PG+ S AL K K+++ H AL D + A + +++ E++ D+ Sbjct: 125 ARFPGMPNSLDALCKRFKVSLVERTL---HGALIDARLLAEVYLELRGGK----ERVLDL 177 Query: 165 TGRP 168 + P Sbjct: 178 SSAP 181 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 16/157 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL I+EI + V + +IV+ L++P + A+ IT M+ Sbjct: 22 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDML 81 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGI 110 D P I V + + + + HN SFD R L E + +++ TM+ AR+L+P + Sbjct: 82 EDMPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPEL 141 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 K+ ++ L + HRAL DC T L Sbjct: 142 KHHRLSD-----LTDYLGLHNNEHRALADCIATKELY 173 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL+ I+EI +V + + KIV+ LV+P +P+S IT M+ Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQML 441 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + IE+V+P + VAHNA FD R + E +I T+ L++ L Sbjct: 442 EVEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSL 501 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADI 164 Y + + KL HHRA D ITA + + ++ E ++D+ Sbjct: 502 LTLKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDL 555 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 169 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%) Query: 2 LRIIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL G+ EI +V V +G++V V+P +PI+P+ + IT MV Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMV 456 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE--------MPGEWICTMKLARRL 106 AD P ++ + + VAHNA +FD R L +I T+ +A+ + Sbjct: 457 ADAPGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAM 516 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 +PG+ + L + P HRA D + ++ Sbjct: 517 YPGLHNYKQGTIN-KHLEL---PSYEAHRACEDSAALGRIFCVML 557 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 169 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 21/173 (12%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G G I EI +V V G++ + +S LV P R I Q + IT AMV Sbjct: 31 FVVVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMV 90 Query: 59 ADKPWIEDVIPHYY-------GSEWYVAHNASFDRRVL----PEMPGEW-----ICTMKL 102 A P + + + + VAHNA FD L + +W + T+ L Sbjct: 91 AGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 ARR W + N L P HRAL D T +L + G Sbjct: 151 ARRAWTRSEVPNHRLATLASF--VGSPTRPTHRALDDARATVDVLHAALEVLG 201 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 169 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 29/192 (15%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EIA + + +G + + P + ++ I IT+ M+ Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEML 540 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRL 106 + I+ V+P + VAHNASFD L E P I TM L++R Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRY 600 Query: 107 WPGIK--YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + + +S L K+ ++ HHRAL D T+ + I +++ Q+AD Sbjct: 601 FSNLLKYFSLKRLATVFKVKLE-----DHHRALADATATSEIFIKMID-------QLADP 648 Query: 165 TGRPSLMTTFTF 176 T P F Sbjct: 649 TKDPKNEQVINF 660 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G ++E+ ++++D V P+R I A+ +H IT+ Sbjct: 5 IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDK 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104 V D P + + + G +AHNA FDR + G WI T++LA+ Sbjct: 65 VKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQ 124 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + +PG+ S AL K K+++ H AL D + A + +++ E++ D+ Sbjct: 125 KRFPGMANSLDALCKRYKISLVDRTL---HGALIDARLLAEVYLEL----KGGKERVLDL 177 Query: 165 TGR 167 + R Sbjct: 178 SSR 180 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V DGK+++ VRP++ ++ +++ I ITE M+ Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDML 441 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P I V+P + VAHNA FD L E +I T++L++ L Sbjct: 442 KDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL 501 Query: 108 PG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161 +S L L HHRAL D +T + ++ + T E++ Sbjct: 502 RNKIKSFSLDKLVDHFGLG-----AFQHHRALDDARVTVNVFWKLIELAKKKSITTFEKL 556 Query: 162 ADITGR 167 + Sbjct: 557 NKLVEN 562 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G GI EIA IV L+ P PI ++ IT+ M Sbjct: 1 MYAIVDIETTGGHASANGITEIAIYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 VA+ P ++V + + +VAHN +FD + ++ + +CT++L R++ Sbjct: 61 VANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRKI 120 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163 PG+ YS L K+ +++V HRA D T L ++ +T A ++ Sbjct: 121 IPGLPSYSLGNLCKSLEISVT-----QRHRAAGDAAATVKLFGLLLQQDTGKAIAHALST 175 Query: 164 ITGRPSLMTTFT 175 + L Sbjct: 176 HSKEQFLPPNLP 187 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 26/185 (14%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57 I+D ET G + I EI +V G+++ LV+P+ ISP + IT AM Sbjct: 31 FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAM 90 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP----EMPGEW-----ICTMKLARR 105 V D P I V+P + VAHNA FD + ++ W + T+ L+RR Sbjct: 91 VDDAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRR 150 Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 + ++ ++ + P HRAL D T +L ++ G T E Sbjct: 151 VVSRDEVRNHKLSTLAA-HFGTEVSPD---HRALSDAKATGEVLHRVLERFGGYGITTLE 206 Query: 160 QMADI 164 ++A + Sbjct: 207 ELATV 211 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+EIA++ + + +I++ L+ P + ++P + I+ + Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDL 468 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 ++P I ++P + + +AHN SFD L ++ +I T+ LAR Sbjct: 469 KNQPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYC 528 Query: 107 WP-GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++Y N+ +L K K++ + +HHRA+ D IT + ++N Sbjct: 529 LDSNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 167 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 29/225 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ++D ET G I EI +V V G+++ V P+RPI ++ IT+A V Sbjct: 21 LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRL 106 A+ P I V+P + G VAHNA FD L + T+ LAR + Sbjct: 81 AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140 Query: 107 WPGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161 + + + L R + P HRAL D T +L I+ G T E + Sbjct: 141 FRRDEVRDHRLSTLARHVGAGITPD---HRALSDARATVDVLHAIIERLGPSGASTLEDL 197 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206 R S + R K +++ PG ++L + Sbjct: 198 GTAHRRASPVQ------LRKKHLAEDVPPVPGVYQFLDAQGAVLY 236 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I+EI +V + +G+IV+ S LV P+ I + + +IT M Sbjct: 17 FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDM 76 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVLPEMPG--------EWICTMKLARR 105 V D P+I +V+ + VAHNASFD R L + + T+ L++ Sbjct: 77 VKDAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVSLSKF 136 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +P K + L ++ P +HRA+ D TA + + AE++ D Sbjct: 137 TFPDKKKHTLIDLCSYLEV-----PLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 27/210 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G I EI G+ V LV P ISP + I+ AMV Sbjct: 13 FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMV 72 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 AD P ED+ +VAHNA FD + + +CT+KL+RRL+ Sbjct: 73 ADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLY 132 Query: 108 PGIKYSN-MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164 P + N AL + L + HRA+ D ++ G + + ++ Sbjct: 133 PEFRRHNMDALIERHGL-----QQVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICEL 187 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 RPS+ + + ++ Y Sbjct: 188 LQRPSIPSHLPLD-----TLQELPRGPGVY 212 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET G I+++A+V + ++V+ V P+RPI + ++ IT V Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV 69 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 +D P IE+V+P + + VAHNASFD R LPE + I T+ LA++ Sbjct: 70 SDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKY 129 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 + K L H A DC AA+ ++ Sbjct: 130 MKHATNHKLETLKRM-----LGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKV----N 180 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 + L T + +AV ++ + + WL Sbjct: 181 KAMLDETAVY-----EAVKEILACNKRNVEWL 207 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 18/193 (9%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET GL I+EI ++ G+IV + L+ P I +A I+ IT MV Sbjct: 84 FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMV 143 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P IEDV+P + VAHNASFD + L E+ I T++L+R ++ Sbjct: 144 KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMY 203 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 + + K + HRAL DC TA + +D + ++ ++ Sbjct: 204 TFLPNHKLTTIKEH----LCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNELEKA 259 Query: 168 PSLMTTFTFGKYR 180 + K Sbjct: 260 CFKVIKDMLNKNN 272 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 24/185 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I++ A+V + GKI++ S L+ P + I + + ++M Sbjct: 5 YVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSM 64 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 V+D P ++ P ++VAHN FD L E G I T++LAR Sbjct: 65 VSDAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELART 124 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161 + P ++ ++ + P H+A D Y TA LL + T +Q+ Sbjct: 125 VLPCSDSYKLSDLSAKEGIMHDRP----HQADSDAYATAKLLHIFLERLEELPLTTIKQL 180 Query: 162 ADITG 166 ++G Sbjct: 181 LKLSG 185 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 77/186 (41%), Gaps = 18/186 (9%) Query: 2 LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 IID ET G I EI+ IV+ + LV P+ I A+ I AMVAD Sbjct: 7 YTIIDVETTGRSNKITEISIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADA 66 Query: 62 PWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110 P ++ +VAHN +FD V+ + + +CT++L+R L PG Sbjct: 67 PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGF 126 Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169 K YS L K+ +++ HRA D T +L ++ T AE R S Sbjct: 127 KSYSLGKLCKSLNIHIS-----DRHRARGDAAATV-ILFQLLLTKDAAAETFQKFLKRES 180 Query: 170 LMTTFT 175 T Sbjct: 181 KEATLP 186 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 16/146 (10%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G +GGI E+ ++ ++ G++V+ S LV P RPI P + IT+ MV Sbjct: 33 YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPG 109 + P +VIP + VAHNA FD L +P + T++LAR L PG Sbjct: 93 SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHR 135 ++ ++ V+ P +HR Sbjct: 153 LRRYRLS-ALVSHFGVRQAP---NHR 174 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 166 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 28/213 (13%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL+ I EIA++ V+DG I V P R + + IT+ M+ Sbjct: 5 YIALDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGML 64 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 AD P IE++I + G + HN FD L E E I T+ L R Sbjct: 65 ADAPPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFM 124 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 G N++ +V P HRA D L ++M+ G M D + Sbjct: 125 TGETRKNLS-CACSYFHV---PQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD--PK 178 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 P + Y+ K +R YL+ L Sbjct: 179 PLI--------YKAKRDQAATKRQKEYLQDLLK 203 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 166 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 33/234 (14%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G +++I +V V I + S V P I P + IT+ Sbjct: 5 FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDRFSTFVDPGCSIPPFITELTGITDKD 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP-EMPGEWI--------CTMKLARR 105 V P ++ + + VAHN FD+ L ++ E + T++L+R Sbjct: 65 VEGAPVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVELSRV 124 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L P + YK +L+ HRA D ITA L I +++ Sbjct: 125 LLPTQES-----YKLSELSSSLDMDHDRPHRADSDAEITAELFIKLLHKLERLPLVTLQS 179 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPEL--RLTLKHY 216 + + + DV R +W+ + D +L +L LK Sbjct: 180 LEQVAKGLKSDW---------DVLTRPLIQKKWMKVDEDEREYDLFRQLALKRV 224 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 166 bits (420), Expect = 7e-40, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G + + EIA ++V DG +V L+ P RPI P + IT+A VA Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVA 71 Query: 60 DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 D P +++ + VAHNA FD L + + + +C++KL+R+L+P Sbjct: 72 DAPTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131 Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + + + + L + + HRA+ D + A I Sbjct: 132 EHRSHGLDRIIERLGLTID-----NRHRAMADTEVLLAFFEHI 169 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 165 bits (419), Expect = 8e-40, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 28/213 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL+ I EIA++ V+DG + LV P RP+ + + + IT+ M+ Sbjct: 16 YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGML 75 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A P I DV + + G + HN FD L + E I T+ L R Sbjct: 76 AGAPAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFM 135 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 PG N++ + HRA D L ++ G GR Sbjct: 136 PGEHKKNLSAACAFY----CIEQVEAHRAEADALSAHLLYQKLLEGRGE---------GR 182 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 L T + Y+ K V +R YL+ L Sbjct: 183 EELFTPKSL-IYKAKKEQPVTKRQKEYLQDLIK 214 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 165 bits (419), Expect = 8e-40, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 25/214 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++ V V DGKI+ + V P++ + Q ++ I+ Sbjct: 12 VYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQ 71 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V P+ EDV I HY +VAHN FD L P + I T++LA+ Sbjct: 72 VQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160 P K ++ L ++ L+ + P H+A D +TA LL+ I T E+ Sbjct: 132 FLPTEKSFRLSDLSESLGLSHENP-----HQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 +A+++ + + T+ + + V +P Y Sbjct: 187 IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 91/237 (38%), Gaps = 27/237 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL+ I+EI ++ GK + S + P I ++ IT A V Sbjct: 23 FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADV 82 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106 P + VI + +VAHNA FD L + + + T+ LARR+ Sbjct: 83 ETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRV 142 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162 + + L + + P HRAL D T +L +M TA ++ Sbjct: 143 LDRSQVGSFKLSQLARY--VGSPNRPAHRALDDAIATVDVLHYLMERLAVYEVQTASELV 200 Query: 163 DITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + P++ ++ ++D A PG + N D + L L+ L Sbjct: 201 HYS--PTVAPEVRAKRH----LADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQ 251 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 21/169 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV+IA + +++G+I+ LV P RPI P + +H I++ Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 56 AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104 MV D P I + + VAHNA FD L +CT+ ++ Sbjct: 554 DMVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSA 613 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L+ AL + + + P H A+ D TA + + ++ Sbjct: 614 GLFDHSGQHTLDALCERFGITI---PPEARHTAMGDTVATAEVFVRMLG 659 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 26/210 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL +EI +V + G+I S L+ P I+ I+ M Sbjct: 40 LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 +A +V+ + G VAHNA+FD+R L + PG++ C++ LARRL Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +P +A K Q P HRAL D +T L + ++ IT Sbjct: 160 YPEAINHQLATLVRHK---QLPTDGTFHRALADAEMTGHLWLRMLADLKQG----YAITE 212 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 P + K + ++V + Y R Sbjct: 213 PPFSLMQKIMTKTK----AEVPKFLRQYAR 238 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 76/212 (35%), Gaps = 27/212 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V + G+ ++ S V P R I P I I++ V Sbjct: 34 FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDV 93 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 P + + VAHNA FD L +CT+ LAR + Sbjct: 94 NGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTM 153 Query: 107 WPGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMADI 164 + L R + T P HRAL D T + ++ G + DI Sbjct: 154 LDRCAVGSFKLSSLARHFHATTTPT---HRALDDALATVTVFHGLLEELGSHDIIHVGDI 210 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 RPS G +V V D + Sbjct: 211 PTRPSRGAA-------GASVFQVPTPDATSIS 235 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 94/233 (40%), Gaps = 36/233 (15%) Query: 5 IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL I+EI +V + +G+I V P RP+S + + + IT+ M+ Sbjct: 372 FDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKMLEGA 431 Query: 62 PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWPGI 110 P E+ I + G AHNA FD + E + I T+ LA+ L P + Sbjct: 432 PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLLPDL 491 Query: 111 -KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMADITG 166 KY + + +L P HHRA D + A + ++ G I Sbjct: 492 GKYKLDIVAEHLRL-----PPFKHHRADADAGMVAYMLVPFFKMLEDLG--------IHT 538 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 S+ T + +GK A R P +L L N + L K +LE+ Sbjct: 539 LQSINPEMTRLRVKGK-----ARRQPKHLIVLAKNNMGLRNLYTLISKAHLEH 586 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 21/167 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I ++ +++GK++ LV P R I P+++ H I Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 56 AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV +P I +V+P ++ V HN +FD R L + T+ LA Sbjct: 576 EMVQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLAS 635 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 P ++ R L V+ H AL D +TA + + ++ Sbjct: 636 IAQPHEPSHSLEAIAAR-LGVEI---TQRHNALSDALVTAEVFLRLL 678 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 26/236 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EIA++ V+DGKI S L+ P R I A AI+ IT MV Sbjct: 78 YVVVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMV 137 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHN-ASFDRRVLPEMPGE--------WICTMKLARRL 106 + P ++ VIP + + HN +D VL E W T KLAR++ Sbjct: 138 KNAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQI 197 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 Y + + K + HRAL DCY+T + + S T E + I Sbjct: 198 L-EPPYKLINIAKR----LNVKQHGKAHRALADCYMTYGIYEKMREISIATTENVKCIEK 252 Query: 167 RPSLMTTFTFGKYRGK--AVSDVAERDP--GYLRWLFNNLDSMSPELRLTLKHYLE 218 T T K G ++ V P +L+ L N ++S + L + ++ Sbjct: 253 YTDKNTEST--KLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLID 306 >UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q8L3_PSYCK Length = 242 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 4 IIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 IIDTET G +++A+++V G R ISP + +H IT+ VA Sbjct: 13 IIDTETDQGRDPRPIQVATINVATGF---EWMKYFNSGRSISPVVIRVHGITDDDVAGLE 69 Query: 63 WIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRK 122 E + + E+ + HN FD RV+ + ICT++LAR +P + + Sbjct: 70 RFE--LEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQL 127 Query: 123 L--NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL---MTTFTFG 177 L + + H AL D + L A + + FG Sbjct: 128 LGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKMPFG 187 Query: 178 KYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL 213 K++G + +V Y++W+ N+ +M P L L Sbjct: 188 KHKGMPIKEVP---ISYVKWMLGNIHNMQPSLYSAL 220 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 25/177 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPD------RPISPQAMAI 50 + + D ET GL IVEI ++ V+DG++V LVRP PI +A + Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 51 HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98 H I++AMV D P + V+P + G AHN FD + C Sbjct: 63 HGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEYC 122 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 T++L+RR +P + N+ + ++L + PG HR+L D +TA + +M Sbjct: 123 TVQLSRRAFPRERTHNLDVL-AQRLGLSFAPG-GRHRSLGDVQVTAEAFVRLMERLS 177 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 20/168 (11%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I EI+++ KIV+ + LV P++ I ++ IT AM Sbjct: 2 LYAVVDIETTGNGPKGQKITEISALIFDGKKIVDEFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 V + P ++ + + +VAHN +FD ++ + + +CT++L R++ Sbjct: 62 VRNAPRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIRLTRKI 121 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 PG+ YS + + P HRA D TA LL ++ Sbjct: 122 IPGLPSYSLGNICTGENI-----PINGRHRAKGDAEATAELLRRLIER 164 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 25/209 (11%) Query: 2 LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET +G + I V DG IV+ L+ P+ + IH IT V D Sbjct: 5 YVALDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLD 64 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108 P +V I + G + VAH A FD L ++ E+IC+ +LA+ P Sbjct: 65 SPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALP 124 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT--- 165 G YK ++L L HH AL D + +L +++T+ ++ + Sbjct: 125 GQLN-----YKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS--DLTAFLKEY 177 Query: 166 --GRPSLMTTFTFGKYRGKAVSDVAERDP 192 + L+ + F + +G + P Sbjct: 178 RYNKTGLLGQYGFKRKKGYQYKENLIYQP 206 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL Q I+EI V ++DGK ++ S L+RP + + + I + + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHEL 63 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-----PEMPGEWICTMKLARRLWPGI 110 D P +++V+P + V HN FD L + T++L++ L PG Sbjct: 64 QDAPKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGA 123 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + Y L + P + HRAL D A LLI ++N Sbjct: 124 SNHRLG-YLCSYLGIDIP---NQHRALDDARGAAMLLIHLLN 161 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 29/232 (12%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET GL ++E A++ +I++ + L+ P+R +S ++ IH+I++AM+ DK Sbjct: 12 LDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAMLRDK 71 Query: 62 PWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLARRL 106 P +V + + V H+ FD +VL + I T++LA+ Sbjct: 72 PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLAKEY 131 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 S AL + + P +HRA+ D + + + T Q+ I Sbjct: 132 GDSPNNSLEALARHFNV-----PHQGNHRAMKDVEMNVKVFKHLTKRF-RTLSQVTHILS 185 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 +P M GKY+G+ +D+ YL W +L +++ ++ Sbjct: 186 KPIKMKYMPLGKYKGRLFTDIP---LEYLLWALKM--DFDQDLLFSIRSEIK 232 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 24/167 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEA 56 +ID ET GL I+EI +V V +G + + P+ + +SP + IT++ Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 57 MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 + P +++P + G V HN +FD L + ++ T KLA+ Sbjct: 117 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 176 Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + PG+ YS AL K + +HHRA+ DC +T +L + Sbjct: 177 TVVPGLSHYSLEALCKHFGI------AGNHHRAVDDCELTEKVLDAL 217 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 26/189 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRP------ISPQAMAI 50 + + D ET GL GIVEI ++ V++G++ LVRP I A + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 51 HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98 H I+ MV P IE+V+P + G VAHN FD + C Sbjct: 63 HGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHC 122 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 T++L+RR +P + N+ + +L + PG HR+ D +TA + ++ TA Sbjct: 123 TVQLSRRAFPKERAHNLTVL-AERLGLNFAPG-GRHRSFGDVQVTAHAYVRLLELL-ATA 179 Query: 159 EQMADITGR 167 E ++G+ Sbjct: 180 EPQQRVSGK 188 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 26/187 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G I++IA+V + +G+I S + P++ I + I+ M Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNKSIPAFIEQLTGISNQM 65 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMP-GEWICTMKLARR 105 V ++ E V ++VAHN FD + ++P E + T++L+R Sbjct: 66 VENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRI 125 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++PG + Y L + +L P HRA D +T + ++I+ T +Q Sbjct: 126 VFPGFEGYKLTELSEELQLRHDQP-----HRADSDAEVTGLIFLEILEKLRQLPYPTLKQ 180 Query: 161 MADITGR 167 + ++ Sbjct: 181 LRRLSQH 187 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 17/167 (10%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G GI EI +V V G+++ LV P P+ + IT MV Sbjct: 62 FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGEFQSLVNPGHPVPAFIARLTGITTLMV 121 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMP---------GEWICTMKLARRL 106 + P IE V+P + VAHNA FD L + + T+ LARR+ Sbjct: 122 SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPLARRV 181 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + N L L HRAL D T ++ + + Sbjct: 182 VTRDEAPNHKLGTLAAL--FRATITPDHRALSDARATVDVMHALFDR 226 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 18/167 (10%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL +EI +V V G+IV+ L+ P IS + IT M Sbjct: 9 VVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEM 68 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 ++ +P E+V + VAHNASFDRR L G C++ ++RR+ Sbjct: 69 LSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + + + P HRAL D +TA L + +++ Sbjct: 129 YQDSPNHKLQTLVSH---AGIPEIGSFHRALADAEMTAHLWMSMIDR 172 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 67/172 (38%), Gaps = 20/172 (11%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + G I EI +V V G+ V S LV P +PI ++ IT AM Sbjct: 44 FVVVDLETTGAKPGPESITEIGAVKVRGGETVGEFSTLVNPGQPIPAFITSLTGITTAMT 103 Query: 59 ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEM---------PGEWICTMKLA 103 A P I VIP S AHNA FD L + T+ LA Sbjct: 104 ARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVALA 163 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 RR + + N L +HRAL D T +L ++ G Sbjct: 164 RRAFSSDEVPNFKLSTLA--GACGATTAPNHRALDDARATVDVLHAMLGRLG 213 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL I+E+ ++ + GK S L+ P PI +IH IT+ MV Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV----LPEMPGEW-----ICTMKLARRL 106 A +P +E+VI + G V HNA FD L ++ +W T+ L+R Sbjct: 72 AGQPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVA 131 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164 +PG++ YS +L + HHRAL DC+ T L + ++AD+ Sbjct: 132 FPGLRSYSLESLSDFFEFKEGV-----HHRALCDCWYTQQLFTRFLEKVDQLRCLELADL 186 Query: 165 TGR 167 Sbjct: 187 AHE 189 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 162 bits (411), Expect = 6e-39, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I+++ + +++GK++ LV P+RP++P++ IH IT Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 M+ +P I+ V+P ++ +AHNA+FD R L I T+ L+ Sbjct: 639 EMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSA 698 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + P + + A+ + L + + H AL D +TA + + ++ + Sbjct: 699 VVHPNQESHRLEAIAERLGLTI-----VGRHTALGDAIVTAEVFLKLIPLLAEKGIRTLR 753 Query: 164 ITGRPSLMTTFTFGKY 179 + T + KY Sbjct: 754 DAREAAEKTYYARVKY 769 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 34/221 (15%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL I+E+ +V DGK V+ + L+ P I + I I + MV Sbjct: 5 FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMV 64 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 + P+I+D + + G++ + HN FD + E E I T+K A+++ Sbjct: 65 SKAPYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVL 124 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 P + N+ + ++ T HHRA D A + + +++G Sbjct: 125 PANESKNLE-HLCEMFDIVTI----HHRAYEDAMSAANVYFR-----------LCELSGE 168 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 +++ + F K + ++ + YL+ L ++ P+ Sbjct: 169 ETIVEQYHFKKQKAAGIT---PKQVNYLKSLIER-HNIKPD 205 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 162 bits (410), Expect = 9e-39, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 82/181 (45%), Gaps = 23/181 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL IVEI ++ G V P RPI +A+AIH IT+ MV Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMV 69 Query: 59 ADKPWIED---VIPHYYGS-EWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARR 105 P + + + + E V HN SFD L + G W T LAR+ Sbjct: 70 EGAPGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARK 129 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMAD 163 +PGIK YS +AL + L+ G HHRAL DC +A+L I+ G+ + D Sbjct: 130 AFPGIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKD 184 Query: 164 I 164 + Sbjct: 185 L 185 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 162 bits (410), Expect = 9e-39, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 21/169 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL I+EI V+++D + + P+R IS A +H IT Sbjct: 6 IVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRES 65 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLAR 104 + P +V + + V HNA FD R L + + T+++AR Sbjct: 66 LIGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMAR 125 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + +PG+ S AL K ++ Q H AL D + A + ++++ Sbjct: 126 KKFPGMPASLDALCKRFNISTQ---ERKFHGALKDATLLARVYVELLEA 171 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +ID ET G+ EIA V + G+IV L+ I + I+ M Sbjct: 5 IAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNM 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 + P E V + + GS VAHNASFD++ + C++ LARRL Sbjct: 65 IRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRL 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159 PG + + P HRA+ D + A L + N T + Sbjct: 125 MPGAPNHKLGTLTRY---ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISHQ 181 Query: 160 QMADITGRPSLMTTFTFGKYRG 181 + + P+ + T + RG Sbjct: 182 MLCSLQKVPAAKISETLKRQRG 203 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G+ I+EI +V V G + S LV P RP+ + I++ MV Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMV 78 Query: 59 ADKPWIEDVIPHYYG----SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + IE V+P + S+ VAHNA+FD L ++I T++L+R Sbjct: 79 GNASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRA 138 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 L+P + + L + + + HR L D T + Sbjct: 139 LFPQERQHRLVDLIQRFGIADEEE-----HRGLSDALQTVECYERM 179 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 25/203 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 I+DTET GL ++EI V+++D +I + P+R IS +A +H IT Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103 +AD P D+ + GS VAHNASFD R L I T+ +A Sbjct: 67 LADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMA 126 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 R+++PG S AL + +++++ H AL D + A + I++ S + M+ Sbjct: 127 RKIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIEL---SKGSQVSMSF 180 Query: 164 ITGRPSLMTTFTFGKYRGKAVSD 186 + G + F + ++ Sbjct: 181 LEGSSASSEKKMFKEREKLIITP 203 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID E G ++++A+V V G I S LV P I + + IT AM+ Sbjct: 19 FVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAML 78 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 +P IE+V+P + G V H D + + + ++ +CT+KLAR++ Sbjct: 79 VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKV 138 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +PG+ KYS + + HRAL D +TA + I I+ Sbjct: 139 FPGLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILEE 181 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 26/187 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G+ I++IA V + KI++ + V P R I P ++ I + Sbjct: 4 FVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDRFNSYVNPMRDIPPFIRSLTNINDNE 63 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 V D P + V P ++VAHN FD + E + G I T++L++ Sbjct: 64 VKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGYTGLSGPVIDTVELSKI 123 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQ 160 +P ++ L ++ +N P HRA D TA + ++IM+ T + Sbjct: 124 AYPTADGFRLSQLSESLHMNHDQP-----HRADSDAEATALIFLEIMDKLYHLPKQTLIE 178 Query: 161 MADITGR 167 + +++ + Sbjct: 179 LNNLSTK 185 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 21/167 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I +V V++GK + L+ P RP+ ++ +H IT Sbjct: 544 YTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITA 603 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 M+A +P IE V+P ++ VAHNA+FD R L + T+ L+ Sbjct: 604 DMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSA 663 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + P + +L + + H AL D +TA + + ++ Sbjct: 664 VIHPNQDSHRLE-AIAERLGITV---VGRHTALGDAMVTAEVFLKLV 706 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 23/189 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G I EIA + + DGK +++ LV P++ I P + I M Sbjct: 6 YAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGINNEM 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106 VA+ P +D+ + +VAHN +FD L + +W +CT++ AR++ Sbjct: 65 VANAPIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKKLCTVRAARKI 124 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADI 164 PG+ YS L + ++++ + HRA D TA L ++ E+M Sbjct: 125 KPGLGSYSLGNLCNSLNISLE-----NRHRAGGDADATAILFSLLLEWDDAGEIEKMIKK 179 Query: 165 TGRPSLMTT 173 T + + Sbjct: 180 TAQDQRLPP 188 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 161 bits (408), Expect = 1e-38, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 21/205 (10%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET GL I+E V + +G++V M ++ P+ P + IT+A + + Sbjct: 388 FDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADLVNA 447 Query: 62 PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109 P IE+ I + G VAHNA FD + E + I T+ L+R L+ Sbjct: 448 PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRALFDN 507 Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168 + Y ++ + ++ HRA YD + + + ++++ M I Sbjct: 508 RRSYRLGSIARFMRIGYDEGV---AHRADYDAEVLSLVFLEMLRL--EQLSTMQTIDDLQ 562 Query: 169 SLMTTFTFGKYRGKAVSDVAERDPG 193 SL +F K R + +A+ Sbjct: 563 SLNNESSFKKLRKSHCTVIAKTQSS 587 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 41/189 (21%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET G I+EIA+ V G I L+ P+ +S I IT+ M Sbjct: 411 VYTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEM 470 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105 V ++ IE+V+P + VAHNASFD L P I T+ +AR Sbjct: 471 VENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARY 530 Query: 106 LW--------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITA 144 + P +K N+ AL K K+N++ HHRA+YD Y TA Sbjct: 531 FYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATA 585 Query: 145 ALLIDIMNT 153 + ++++ Sbjct: 586 EVFLNMLQD 594 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 18/194 (9%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL IV+IA + + G++ LV P RPI P + A+H IT+AMV Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A P + + H+ VAHNA FD L + + T+ L+ LW Sbjct: 514 AGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW 573 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMADITG 166 ++ T +L + PP H A+ D TA + ++ ++ D+ Sbjct: 574 GQSAPHSLD-ALTERLGIVIPPEA-RHTAMGDARATAEAYLRLIAALEAKGLDRFEDVLA 631 Query: 167 RPSLMTTFTFGKYR 180 + Sbjct: 632 EARRHRRLVDDANK 645 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 20/214 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A+V + G ++ + P P+S + + IT+ MV Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMV 486 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 E+V+ + VAHNA+FD L PE I T++LAR L Sbjct: 487 RGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYL 546 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +P K + + ++K V HHRA+YD T L + + + Sbjct: 547 YPQFKRFGLGVL-SKKFGVSLE---QHHRAIYDAEATGHLAWIFVKEAMDNHNMLYHDQL 602 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + ++ + R V+ +A+ G L+ LF Sbjct: 603 NEHIGEGDSYKRARPFHVTILAKNQAG-LKDLFK 635 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 26/180 (14%) Query: 3 RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL+ I+EI V++I+ K+ ++P+R I A+ +H IT Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101 +ADKP +D+ + V HNA FD L + T+ Sbjct: 64 LADKPVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 LAR PG K + AL K + H AL D I A + ++ T G T + Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSARDL---HGALLDAEILADVY--LLMTGGQTNLAL 178 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 23/169 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL +V +A V +++G+I+ L+ P R I + AIH IT+ Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 AMVA+ P E V+P + G VAHNA+FD + L G + TM L+R Sbjct: 566 AMVAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSR 625 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++ ++S L + + + H A+ D +TAA+ + +M+ Sbjct: 626 QIQGDHGEHSLDGLAARLGIGL-----VDRHSAMGDSLMTAAIFLRLMD 669 >UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ES02_ACIF5 Length = 220 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 16/221 (7%) Query: 4 IIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLV---RPDRPISPQAMAIHRITEAMVA 59 I DTET G ++ ++E A + V D + + V RP +PI AMA+H I E + Sbjct: 5 IFDTETTGRVEPELIEAAWLAVSDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILEEDLL 64 Query: 60 DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY 118 + P +P G + V H+ +D V+ + + ICT + R+LWP + + + Sbjct: 65 ESPPASSFRLPEDTG--YLVGHSIDYDWGVIGKPDVKRICTYAMTRKLWPEVDSHSQS-A 121 Query: 119 KTRKLNVQTPPGL----HHHRALYDCYITAALLID-IMNTSGWTAEQMADITGRPSLMTT 173 + + H AL D LL I++ + E + + + R + T Sbjct: 122 LMYHFSKDKRKTRDNLKNAHSALADVKFCRILLNKVILSVRPNSWEDLWEFSERARIPET 181 Query: 174 FTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 FGK++G ++D+ + Y RW NNL M LR L+ Sbjct: 182 MPFGKHKGVKIADLPD---DYRRWALNNLTDMDTYLRKALE 219 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EIA+V + +G+ V S LV P ISP + I+ AMV Sbjct: 5 YVLLDLETTGGNPVHDRITEIAAVRIENGQEVARWSTLVNPGCSISPFIQHLTGISNAMV 64 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 P E V + VAHN FD L + + +CT++L+R L+ Sbjct: 65 RGAPGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVALRVKTLCTVRLSRLLY 124 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 P K + R L HRA+ D + A L Sbjct: 125 PQHKGHGLDAIMQRH----GIRTLERHRAMGDVEVMQAWLQ 161 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I + + GK+ LV P RPI P + IH I Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 56 AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MVA +P I+ V+P ++ VAHNA+FD R L + T+ L+ Sbjct: 601 DMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSA 660 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + P + + A+ + + V + H AL D +TA + + ++ Sbjct: 661 VVHPNQESHRLEAIAERFSITV-----VGRHTALGDAMVTAEVFVRLI 703 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL G ++E+A+V + +GK+V + L+R + I P A +H I M Sbjct: 5 LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 + P EDV + G VAHNA FD + + ICT+++ARR Sbjct: 65 LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 +P + + L P HRAL D + A + + + Sbjct: 125 FPELASHRLEALARHLLG-SIPEDCRLHRALGDARLAARVWLAM 167 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 22/197 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ I+EI+++ V + + V S LV P RPI A ++ IT+ MV Sbjct: 58 YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMV 117 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE---------MPGEWICTMKLARR 105 +P +E ++P + E + HN SFD L + ++I T+ +AR Sbjct: 118 QSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARA 177 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L PG+ + L K++ + HRA DC + + + Sbjct: 178 LLPGLSRHRLTDLADYFKISSEG-----AHRAFNDCVMNQICYEHMGKLLKDADIPVCPR 232 Query: 165 TGRPSLMTTFTFGKYRG 181 G FG + G Sbjct: 233 CGGELTKRNGKFGPFYG 249 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 26/188 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + GI EIA ++V+ L+ P+RPI P + I MV Sbjct: 3 YAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMV 62 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 P V I VAHNA FD R+L + +CT+ L++RL Sbjct: 63 QTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLI 122 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWT-------AE 159 P + ++ R L + P + HRA D T LL +++ +G T AE Sbjct: 123 PDAESHSLGKL-VRSLGI---PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRAE 178 Query: 160 QMADITGR 167 + +++ R Sbjct: 179 TLGELSNR 186 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 31/193 (16%) Query: 3 RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G+ ++EI +V+V++ ++ + P+R I P+A+ +H IT Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG------------------EW 96 VAD+P D+ Y V HNA+FD + G Sbjct: 64 VADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123 Query: 97 ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 + T+ +AR+L PG + + AL K ++ H AL D I + + + + T G Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVL---HGALLDAEILSDVYLTM--TGGQ 178 Query: 157 TAEQMADITGRPS 169 TA +A I R Sbjct: 179 TALSLAGIEERAG 191 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 23/175 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL ++++A+ + G ++ + P P+S + IT+ V Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV 484 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 + +E V+ + VAHNA+FD LP++ I T++ AR L Sbjct: 485 KNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNL 544 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI----DIMNTSGWT 157 +P K + T++ V HHH A YD T LL ++ G T Sbjct: 545 YPEYKRHGLGPL-TKRFGVALE---HHHMANYDAEATGRLLFIFIKEVAEKHGVT 595 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 160 bits (405), Expect = 3e-38, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 22/214 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+EI +V + +G++++ + P P+S + + IT+ MV Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMV 451 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 VI +YG++ HN FD + PE+ + T++++R L Sbjct: 452 QAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLL 511 Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 P +L + + ++ HHHRA D T L+ +++ + D+ Sbjct: 512 HPEQSRHTLDSLCRKYNVALE-----HHHRANQDAEATGYLMFKLLDAFNDKYHE-DDLG 565 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199 + + R ++ +A+ LR L+ Sbjct: 566 KMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLY 599 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 21/208 (10%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I E +V V G++V + LVR I P + IT+AM+ Sbjct: 52 FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAML 111 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 A P + +V+P + VAHNA FD L + T +LARR+ Sbjct: 112 ATAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRI 171 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADIT 165 + N L +L HRAL D T +L + G + D+ Sbjct: 172 VTRDESPNNKLSSLARL--FRARTEPCHRALADARATVDVLHGLFERLGNLGVTTLEDVH 229 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193 + ++ + R + ++D PG Sbjct: 230 AYSARVSPA---QRRKRVLADDLPTGPG 254 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +ID ET G + + EIA + + G+IV LV P+RPI + IT+ MV Sbjct: 7 LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A P ++ + + +VAHNA FD + + +CT+KL+R L+ Sbjct: 67 AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ AL + HRA+ D + ++ + ++A+ +A Sbjct: 127 PEHHRHGLDALIERHGFTCGA-----RHRAMGDTDVLWQ-FARLV-SGSFSADVLALACA 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194 R + G G A+ V + Y Sbjct: 180 RAMKLPARPPGLPEG-ALEGVPDAPGVY 206 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 20/166 (12%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G + GI EIA K+V+ LV P++PI P + + I M Sbjct: 1 MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 + + P +V I VAHNA FD R+L E + +CT++L+++L Sbjct: 61 LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 PG+ YS L ++ + P HRA D T L ++ Sbjct: 121 IPGLPSYSLGKLVRSLGI-----PLSDRHRAAGDAQATIKLFKMLL 161 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 20/184 (10%) Query: 2 LRIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G G I EI +V V G++ LV P I + IT+ MV Sbjct: 68 FCVVDLETTGTSEGSQITEIGAVKVCGGRVEGEFQTLVCPTGSIPASVQVLTGITDVMVR 127 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW 107 P + V+P + S VAHNA FD L + + T+ LAR + Sbjct: 128 SAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPWDDPAVVDTLALARSVL 187 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMAD 163 + N L +L HRAL D T +L +++ G T E + + Sbjct: 188 ARGEVRNYKLSTLSRL--FHTTTTPSHRALADARATVDVLHGLIDRVGNLGVTTLEDLLE 245 Query: 164 ITGR 167 +T R Sbjct: 246 MTHR 249 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 159 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 23/180 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV IA V +++G+I+ + +V P RPI +++ H IT+ Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITD 278 Query: 56 AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV DKP V+P + VAHNA+FD + L + TM L+ Sbjct: 279 DMVVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338 Query: 105 RL-WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 L P +S + + + H AL D +TAA+L+ + Q D Sbjct: 339 FLDGPDAGHSLDDICDRYGIEIT-----DRHTALGDAMVTAAVLLRQIEALEGRGIQTLD 393 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 159 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 27/219 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I+++ V V DG+I+N + P + + I Sbjct: 24 IYSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIINHFETKINPRVAVPRHITQLTGIKNN 83 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 V + P ED+ + +VAHN +FD L P + + I T+ L++ Sbjct: 84 DVRNAPLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLSQ 143 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTS----GWTAE 159 L P +K Y+ R L H H A+ D TA LL+D+M T E Sbjct: 144 ILMPTVKS-----YRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQLRELPTLTLE 198 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS-DVAERDPGYLRW 197 ++ ++ TT + + V+ + D Y+ Sbjct: 199 KLVELKLNLPQQTTMVLEQELERRVANPLPLDDSLYVSH 237 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 159 bits (403), Expect = 6e-38, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%) Query: 5 IDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAMVA 59 DTET GL I+EI +V++I+ L+ P +S + I IT+ + Sbjct: 10 FDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITGITDDHLR 69 Query: 60 DKPWIE-----DVIPHYYGSEWYVAHNASFDRRVLPE----------MPGEWICTMKLAR 104 DKP E D + G VAHNASFDR L W+ T+++AR Sbjct: 70 DKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQMAR 129 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + +PG S AL K +++++ H AL D + A++ ++++ Sbjct: 130 KRYPGAPASLDALCKRFDISLESRT---FHGALLDSQLLASVYLELLG 174 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 159 bits (403), Expect = 7e-38, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +IDTET GL I+ +A+V V + KI++ + + P+ I +++ H IT+ M Sbjct: 44 VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 VADKP +V+P + V H+ +FD +++ ++ W+ TM + Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSH 163 Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +YS L L++ H AL D TA + ++ + + + + Sbjct: 164 AIIKKDERYSLDYL-----LDLYNVTCNGRHTALGDALATAEVFTKMIMQASREFKTVRE 218 Query: 164 ITG 166 + Sbjct: 219 LCD 221 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 22/208 (10%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET GL I+EI +V + +++ S V+P+R +S + I I++ Sbjct: 418 IYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPERNLSEKVTRITGISDRE 477 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 + D P + +V+P + VAHNA+FD R + + +I T+ L++ Sbjct: 478 LEDAPSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLALSKS 537 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 L YS + K KL HHRA D ITA + +++ + + I Sbjct: 538 LLKSKSYSLDNVVKRLKLG-----DFEHHRASEDARITAEVFKKLLSMAKKRG--IKKIA 590 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193 +L R V+ +A+ G Sbjct: 591 ELENLRKHINISSLRPLHVTILAKNKTG 618 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 159 bits (402), Expect = 9e-38, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 22/192 (11%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55 I DTET GL + +IA+ V++GK+V LV P RPI A IH IT+ Sbjct: 291 YVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITD 350 Query: 56 AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104 AMVAD P ++G +AHNA FD + T+ L+ Sbjct: 351 AMVADAPDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTVLLSA 410 Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMA 162 ++ + +S AL + + + P H AL D T + + ++ E Sbjct: 411 VIYGQTEQHSLDALAERLNVTI---PEEARHTALGDALATTEVFLKLLPMLQAKGIETFG 467 Query: 163 DITGRPSLMTTF 174 D+ + Sbjct: 468 DLLAQTKKHARL 479 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 159 bits (402), Expect = 9e-38, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 22/160 (13%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 +D ET G I EI +V V DGKIV+ + LV P R +S + + I+ M+ D+ Sbjct: 14 LDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEMLEDQ 73 Query: 62 PWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107 P IED++ + ++ V HN FD L I TM + R L+ Sbjct: 74 PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDRLLF 133 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P ++ + L + + + HRAL D T L Sbjct: 134 PSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCL 168 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 23/217 (10%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + I+D ET G GI EIA ++++ L+ P + I + IT M Sbjct: 12 IYAIVDIETTGGYAANSGITEIAIYLHDGHQVIDSYQTLINPHKEIPYHIQMLTGITPEM 71 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 + D P EDV + ++ +VAHN +FD + + +CT++LAR + Sbjct: 72 LTDAPSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCTVRLARNI 131 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMADIT 165 + G ++ ++L++ P HRA D T L I+ + + Sbjct: 132 FKGFSSYSLGNL-CQRLDI---PISDRHRAAGDAKATVILFERILSQDTDGLIDSFLQTH 187 Query: 166 GR----PSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 + P+ + F + K + + + G + ++ Sbjct: 188 AKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 18/175 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ++DTET GL + +IA+ + G+I + V P +PI + + + I + V Sbjct: 6 LVVLDTETTGLSYNHDELTQIAAARMECGEITDWFVTFVNPGKPIPDEIVRLTNIHDEDV 65 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108 D P ++ + + G + VAHNA FD+ + W+ ++ LAR P Sbjct: 66 VDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECLNRNIWVDSLALARIALP 125 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +K + L + HRA D A+ +++ + + Sbjct: 126 RMKSHRLID-----LVHAFDAPISTHRADADVEALCAVYRILLSAVATMPPDLVE 175 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 158 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V +G+IV+ S V P+ PI + + I + MV Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMV 532 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 + P IE+++P + VAHNA FD + + I T+ LA+ L Sbjct: 533 MNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLM 592 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHR 135 P + + T+ LNV HHR Sbjct: 593 PNLHNYKLDTL-TKHLNVVLES---HHR 616 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 26/185 (14%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I++ ++V V +I + V P++P+ P + I M Sbjct: 4 YVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVPPFISELTGIDNGM 63 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + + P ++ P +VAHN FD L P G + T++ +R Sbjct: 64 LEEAPVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTVEFSRI 123 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160 +P + Y L + L + P HRA D ++TA LL+ M T EQ Sbjct: 124 AFPTLNSYKLGDLADSLSLYHERP-----HRADSDAFVTAKLLLACMEKCASLPVVTLEQ 178 Query: 161 MADIT 165 + ++ Sbjct: 179 LVPLS 183 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 19/179 (10%) Query: 2 LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET G + I + V V++ +IV LV P S + +H IT V D Sbjct: 41 FIALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVID 100 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108 P E V P + VAHNA+FD VL + + + C+ +LA+R Sbjct: 101 APSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTID 160 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 +Y L K KL+ HH AL D A + ++ + M I G+ Sbjct: 161 AYRYGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHYD-NLQSMLQIYGK 213 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 24/189 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET G IVEI +V IDG+ + L+ P RPI P A A++ I++ MV Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMV 74 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 KP I+ ++P + G + VAHNA FD + L G + ++ +AR++ Sbjct: 75 KGKPLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSLPIARKV 134 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE-----QM 161 +PG+ + + L + P + HRA D + +M + + Sbjct: 135 FPGLPNYKLGTL-VQHLKI---PTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190 Query: 162 ADITGRPSL 170 +TG+P L Sbjct: 191 IALTGKPEL 199 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 157 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 19/169 (11%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV+IA+V +++G+ V LV P RPI + A+H ITE Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITE 569 Query: 56 AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104 AMVA P I +V + VAHNA FD L + T+ L+ Sbjct: 570 AMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSA 629 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 ++ + ++ T +L + T P H AL D TA + ++ Sbjct: 630 VVFGAAEGHSLD-ALTHRLGI-TIPEEARHTALGDTVATAEAFLRLLPA 676 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G + + EI V + I++ S L+ P+ I + I AM Sbjct: 7 LYCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLIDPEVLIPDYITTLTGIDNAM 66 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 VA P DV + +VAHN +FD VL + + +CT++L+R L Sbjct: 67 VASAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLSREL 126 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 PG++ YS L + P ++ HRA D T L ++ T +Q DI Sbjct: 127 IPGMRSYSLGKLCDDIGI-----PLINRHRAEGDTDATVILFQKLI-----TIDQEGDIF 176 Query: 166 GR 167 + Sbjct: 177 NK 178 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 20/171 (11%) Query: 1 MLRIIDTETCG-LQG--GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G ++G + EIA ++V+ L+ P PI P + I++ M Sbjct: 1 MYCIVDVETTGGVKGPTRLTEIAIFRHDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 V D P DV +VAHN FD + + +CT++ +R+L Sbjct: 61 VQDAPTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCTVRTSRKL 120 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 PG YS L ++ ++ P HRA D T L ++ Sbjct: 121 LPGYPSYSLGKLCRSLEI-----PLNGRHRAQGDAAATVLLFEMLLKNDAQ 166 >UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTS6_BACTU Length = 286 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 22/166 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I EI +V IDGK+V+ S L+ P+ I + IT M Sbjct: 19 FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLINPEMKIPANITKLTGITNDM 78 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVL--------PEMPGEWICTMKLARR 105 V KP V+P + VAHNA FD R L E + ++ + + Sbjct: 79 VQGKPVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSVAVFQH 138 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 P KY T + HRA D T L+++ Sbjct: 139 FCPNKGKYKLDDFCTTFGY-----LNKNRHRAYEDAEATGYCLLEL 179 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 59/274 (21%), Positives = 96/274 (35%), Gaps = 67/274 (24%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L I D ET GL I++I+ + V S V P++PI P + IT+ MV Sbjct: 9 LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHN-ASFDRRVLPEMPGEWI----------CTMKLAR 104 D P + + + + + N FD +P + E++ C + A+ Sbjct: 69 KDAPTFKQIAKSLQETFAGCDFAGFNSNRFD---VPMLAEEFLRAGVDFDFQRCRLIDAQ 125 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----------- 153 ++ ++ N+A + HRA D T +L ++ Sbjct: 126 NIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEK 185 Query: 154 ------------------------------SGWTAEQMADITGRPSLMTTFTFGKYRGKA 183 + + D G+P L F F KY+G A Sbjct: 186 TLANDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWA 245 Query: 184 VSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 V+DV RDPG+ W+ +S + L K L Sbjct: 246 VADVVHRDPGFCNWI------LSSDFPLNTKQVL 273 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G+ EIA V V +G +++ L+ + + A+ IT AM Sbjct: 31 YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAM 90 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 V P + V+ + GS VAHNA+FDR+ +++C++ L+RR+ Sbjct: 91 VRAAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRV 150 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +P + + P HRAL D TA L I +T Sbjct: 151 FPDSPNHKLGTLVR---TLGLPASGRFHRALADAEATAQLFARIAHT 194 >UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB Length = 263 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 23/240 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D E+ G+ ++++A + V KI + L D ++ +AIH IT AM+ Sbjct: 5 LYFVDVESTGVDLKNDRLIQLAFLKVQGDKI-EAFNDLCYTDIEMNDTVVAIHNITNAML 63 Query: 59 ADK--PWIEDVIPHYYGSE----WYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108 DK P+ D +++AH D +L + + + T K AR L Sbjct: 64 EDKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTDKCARLLLK 123 Query: 109 GI-KYSNMALYKTRKLNVQTPP--------GLHHHRALYDCYITAALLIDIMNTSGWTAE 159 Y L KL + L H AL D L +++ + Sbjct: 124 EAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEELLERVEGGID 183 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + +T P ++ TFGKY+GK+ +V ++ P L W++ N+ + P+L TL+H+L+ Sbjct: 184 ALVSLTAEPMMLEKITFGKYKGKSFEEVFQKSPLDLVWMYANMAADWPDLDYTLEHWLKQ 243 >UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria RepID=DPO3E_SALTI Length = 243 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 40/237 (16%) Query: 3 RIIDTETCGLQ--------GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53 ++DTET G+ I+EI +V+VI+ ++ ++PDR + P+A +H I Sbjct: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68 Query: 54 TEAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL--------PEMPG-----EWI 97 + + DKP DV+ + V HNASFD + ++P + Sbjct: 69 ADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCKVT 128 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 ++ LAR+++PG + S AL +++ H AL D I A + + + T G T Sbjct: 129 DSLALARKMFPGKRNSLDALCSRYEIDNSKRTL---HGALLDAQILAEVYLAM--TGGQT 183 Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP-ELRLTL 213 + A + +G+A R LR +F + + ++ E RL L Sbjct: 184 SMTFAMEGETQ---------RQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDL 231 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 22/168 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57 IID ET GL ++E+A++ G I++ + HL +P I + + + IT AM Sbjct: 12 FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAM 71 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARR 105 V DKP+ ED+ P + VAHNA FD L E+ +ICT LARR Sbjct: 72 VIDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARR 131 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++P I K S +L +N + HRAL D T ++ Sbjct: 132 IFPEIQKKSLSSLTNYLGINFK-----QKHRALSDAQATLQAFQTMLE 174 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 21/171 (12%) Query: 3 RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G + I EI + +IDG+ + LV P +PI P + I++AMVA Sbjct: 8 AIVDLETTGGHITRDRITEIG-ILLIDGERIERYETLVNPGQPIPPFIENMTGISDAMVA 66 Query: 60 DKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 + P + + +AHNA FD L E +CT+KL+RRL+P Sbjct: 67 EAPPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRRLYP 126 Query: 109 G-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 K+S +L + + HRA+ D + G A Sbjct: 127 QHFKHSLDSLIARHGIVLA-----DRHRAMADALAVYHFIEAATAELGPEA 172 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 156 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 18/157 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET G ++E+A+V DG+ + S L+ P P+ + + I AM+ Sbjct: 6 FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAML 65 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 A KP IE+V+P + G VAHNA FD L +P T +LAR Sbjct: 66 AGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVAL 125 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 P + +A + P HHHRA D Sbjct: 126 PLARNHRLATLA----ELLGLPLEHHHRAEDDARACG 158 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 22/160 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G Q I++ A+ V GK + + + P++PI + I+ Sbjct: 6 YIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKD 65 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-PEMPG--------EWICTMKLARR 105 V + P EDV P +VAHN SFD L EM + + T++LAR Sbjct: 66 VKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARI 125 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144 ++PGI Y L L P HRA D +TA Sbjct: 126 MYPGIDSYKLQDLSDEFNLGHDKP-----HRADSDAEVTA 160 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GLQ +V I++V + GK+ + LV P R I ++ A HRI + Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIED 700 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRV---------LPEMPGEWICTMKLA 103 MVAD P + +V P + G VAHNA+FD++ LP + + T+ L+ Sbjct: 701 HMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTLFLS 760 Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQM 161 L G + +S A+ + + ++ H +L D TA + + +++ G + Sbjct: 761 VGLHSGTEGHSLDAMAQRMGIAIEG-----RHTSLGDARATAQIFLGLLSLLPGRGVRTL 815 Query: 162 AD 163 A+ Sbjct: 816 AE 817 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G ++EI + DG+I +S VRP +PI P + IT+ Sbjct: 5 FVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIPPFISQLTGITDED 64 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 VA + P +VAHN FD L E G I T++LAR Sbjct: 65 VAQAESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVELARI 124 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAA 145 L P + +++ L + +L HRA D TA Sbjct: 125 LLPTAESHSLSHLTEALQLTHH-----EAHRAGSDAEATAE 160 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 20/171 (11%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M IID ET G + G I EIA K+ + L+ P++ I + + I+ Sbjct: 1 MYAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISLINPEKKIDDFVVRLTGISNKT 60 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 V P +V I VAHNASFD RVL + +CT+++++RL Sbjct: 61 VRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTLCTVEMSQRL 120 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P YS L ++ + P L+ HRA D T L +++ Sbjct: 121 LPDEPSYSLGKLTRSLGI-----PLLNRHRANGDAMATVHLFKLLLDRDTQ 166 >UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1U9_9ACTO Length = 206 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 20/168 (11%) Query: 2 LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 L +D ET GL I E+A+V G++V S LV P R I + I +VA Sbjct: 17 LVSVDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVA 76 Query: 60 DKPWIEDVIPHYYG-----SEWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARR 105 D P + +V+P + +AHNA FD R L ++ EW I T+ +R Sbjct: 77 DAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRA 136 Query: 106 LWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L P + N L ++ P + HRAL D Y L +++ Sbjct: 137 LLPRPQVQNHRLGTLAHHFGIKNP---NAHRALADAYTCLELYKCLLD 181 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL +++IA+ + G IV + P P+S + IT+ + Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHL 486 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 + V+ + VAHNASFD LP++ I T++ AR L Sbjct: 487 QGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +P K + L K ++++ HHH A YD T LL + + Sbjct: 547 YPEYKRHGLGPLTKRFQVSLD-----HHHMANYDAEATGRLLFIFLKDA 590 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 22/170 (12%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55 I DTET G I+ IA+V + +G+I LV P R I + IT+ Sbjct: 78 YIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGITD 137 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLA 103 MVADK I V+ + G VAHNA FD L E+ I T KL Sbjct: 138 DMVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLG 197 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 R L+P + ++ H AL D +TA + +D + Sbjct: 198 RALYPQLLSHDLDTLIRHH----RVKERPRHTALGDSLMTAEIFLDYLKK 243 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 18/163 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET G + +IA+ + G+IV V P +PI + I + V Sbjct: 10 VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDRDV 69 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV-------LPEMPGEWICTMKLARRLWP 108 AD P D + + G VAHNA FDR P + WI ++ LAR P Sbjct: 70 ADAPLPADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 129 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 +K + L L HRA D T A+ ++ Sbjct: 130 RMKSHRL-----LDLVRAFGAPLSTHRADADVEATCAIFRILL 167 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 35/206 (16%) Query: 3 RIIDTETCGLQ---------GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHR 52 I DTET G+ I+EI V++ID + P++P+ PQA +H Sbjct: 6 VIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQAFKVHG 65 Query: 53 ITEAMVADKPWIEDVIPHYYG----SEWYVAHNASFDRRVLPEM------------PGEW 96 I++ +ADKP+ +DV+P + ++ VAHN +FDR+ + Sbjct: 66 ISDEFLADKPFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCDYRLGDKFTL 125 Query: 97 ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 + ++K+AR + G + + AL K ++ G H AL D + A + + + T G Sbjct: 126 VDSLKIAREKFAGARNNLDALCKRFGVD---NTGRELHGALLDAQLLAEVYLKL--TGGQ 180 Query: 157 T----AEQMADITGRPSLMTTFTFGK 178 + A M R T TF K Sbjct: 181 SDLSFAHPMMASARRAEQKTAATFAK 206 >UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acinetobacter RepID=B2I3R4_ACIBC Length = 226 Score = 155 bits (393), Expect = 9e-37, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 21/228 (9%) Query: 3 RIIDTETCGLQGGIVEIASVD--VIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEA 56 I+DTET L G +EIA + +G+++ + PI +AMA+H I E Sbjct: 4 IILDTETNKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEPIDLEAMAVHNIIET 63 Query: 57 MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWPGIK 111 + +P E +P G E+ V HN +D + L P + + ICT+ LAR +WP + Sbjct: 64 DIEGQPSCESFRLPE--GVEFIVGHNIDYDIKALNKCGPAIKVKTICTLALARDVWPDLT 121 Query: 112 YSNMALYKTRKLNVQTPPG---LHHHRALYDCYITAALLIDIMNTSG-WTAEQMADITGR 167 +A+ ++ + H H A D Y T +LI ++ G + ++ Sbjct: 122 SHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGIKDLNSLYLMSEA 181 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKH 215 L T+GK++G + ++ Y+ WL N D + P LR L++ Sbjct: 182 VRLPKIMTWGKHKGTPLKELPRP---YISWLLNKED-LDPHLRKALQN 225 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 27/198 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+E+ ++ +G V S LV P+ IS +A I+ IT MV Sbjct: 52 YVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMV 111 Query: 59 ADKPWIEDV---IPHYYGSE-----WYVAHNASFDRRVLPEMPGE--------WICTMKL 102 P + V + + G AHNA FD L + + T+ L Sbjct: 112 KKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSL 171 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTA 158 +R++ PG+ + N++ HRA+ D + +L ++ + Sbjct: 172 SRKIIPGLSNYKQTTV-AKHFNIKNK---QEHRAISDAEVCGEILWKLLSIKKDEEVKKL 227 Query: 159 EQMADITGRPSLMTTFTF 176 E + P M F Sbjct: 228 EILVKSKPSPEEMEVCAF 245 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56 + DTET GL + IV+I +V V++G+++ ++ LV P RPI + +H ++ A Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 57 MVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARR 105 MV P I + ++ VAHNA FD L + T+ L+ Sbjct: 337 MVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAV 396 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 L+ G + +L++ PP L H AL D TA L+ ++ Sbjct: 397 LF-GASVPHTLDALCERLDITIPPAL-RHTALGDAQATACALVQMI 440 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 24/173 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP--ISPQAMAIHRITEA 56 ++D ET G I+ IA+V + +GKI+ L+ P + IS + I++ Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464 Query: 57 MVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEM---------PGEWICTMK 101 ++ +KP I++++ + + VAHNASFD L E I T+ Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLT 524 Query: 102 LARRLWPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 LA++ + +KY S + K+ K+ + + +H AL+D TA + ++++ Sbjct: 525 LAQKYFNKILKYFSLEKIVKSFKIKLDSE--GQYHNALFDARATALIFLEMLE 575 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 18/175 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + +IDTET G+ + +IA+ +++GKIV+ V P RPI + + I E+ V Sbjct: 37 IVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDV 96 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108 AD P E+ + + G VAHNA+FD+ + WI ++ LAR P Sbjct: 97 ADAPSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALP 156 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +K + L L HRA D A+ ++ ++ + D Sbjct: 157 RLKSHRL-----LDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLID 206 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 19/163 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + I EI V++ V+ + LV P +PI P + I++AMV Sbjct: 38 LVFVDLETTGGTPAEHRITEIGVVEI-GPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 96 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P ++ P + +VAHNASFDR L + +CT++L+R L+ Sbjct: 97 RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALF 156 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 P + R HRAL D + + Sbjct: 157 PRESRHGLDALIARH----GLVPAARHRALADADLLWQFWRHL 195 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 154 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 26/195 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56 + DTET GL IVE+A+ V++G+I++ V P RPI + IH + +A Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332 Query: 57 MVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105 VA P IE VIP ++ S VAHNA FD +L + + T+ L+ Sbjct: 333 DVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSAL 392 Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMAD 163 ++ +S AL + + P H H A D TA LI ++ G E Sbjct: 393 VFGISADHSLDALCSRLSIEI---PARHRHTAKGDARATAEALIRLLPLLQGKGIETFGQ 449 Query: 164 ITGRPSLMTTFTFGK 178 + L T FG+ Sbjct: 450 L-----LKETSKFGR 459 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 26/168 (15%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G I EI +V V +G IV+ LV P RPI Q + IT+AMV Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93 Query: 59 ADKPWIEDVIPHYY----------GSEWYVAHNASFDRRVLPEMPGEW---------ICT 99 AD I++V+P + E V HN SFD R L T Sbjct: 94 ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDT 153 Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 M+++R L+P ++ +A R + HRAL D T Sbjct: 154 MQISRALFPAQRHHRLADLIVR-FGIADNEE---HRALSDAIQTQQCF 197 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 18/171 (10%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL EIA + + +G++V+ L+ R I +A+ IT M Sbjct: 11 VAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDM 70 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARRL 106 +A P +V+ + G VAHNA FD+R G + CTM +ARR+ Sbjct: 71 IATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRI 130 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 +P + ++ ++ P HRA+ D + L + T Sbjct: 131 YPDARSHRLSSLAEM---LRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 18 EIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YYGS 74 EI +V V DG +V+ LV P + + + + IT MV + P ++V+P + G Sbjct: 2 EIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLGD 61 Query: 75 EWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPGIKYSNMA-LYKTRKLN 124 VAHN SFD L +P E +CT++LARRL PG+ ++ L + ++ Sbjct: 62 GILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDID 121 Query: 125 VQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 V+ HRAL D T+ +L ++ + E Sbjct: 122 VEG-----RHRALGDAEATSVVLRRFVSQLAFEHE 151 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + D ET GL I+ + +V ++ +++ LV P RPI + +H +T Sbjct: 442 LYTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTW 501 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---PGEWICTMKLARRLWPG 109 M+ DKP +E+V+P + VAHN +FD L ++ + T+ LA L+P Sbjct: 502 EMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQPPLVDTLLLAHLLFPD 561 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 +K + + V P L H AL D +TA + ++ Sbjct: 562 LKDHRLERL-AERFGV---PVLGRHTALGDALMTAEVYARMI 599 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 30/210 (14%) Query: 3 RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET GL I+EI ++ V G+IV+ LVRP+RPI + + +++A VA Sbjct: 4 IIVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVA 63 Query: 60 DKPWIEDVIPHYYGSE---WYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107 P + + + G H+ F+R LP PG+ +CT+ LAR L Sbjct: 64 GAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILA 123 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD-ITG 166 P + + Y R+L ++ HRAL D LL+ + + + + + G Sbjct: 124 PRLMSHRLE-YLARRLRLRAEVS---HRALADARTAHQLLMRLEEKARRLPSGVIELLAG 179 Query: 167 RPSLMTTFTFG----------KYRGKAVSD 186 L + T G +++G + + Sbjct: 180 LAGLYSPLTAGWFEQVLSRHEEHQGPPLEE 209 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 16/161 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET G+ IVE+A+V V ++ LV P I QA+A+H IT+ MV Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMV 68 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A P + + VAHNA FD L E G+ + +++L + Sbjct: 69 AGAPSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTT 128 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 +P + N+ + ++T G++ HRA D T +L Sbjct: 129 FPNLPSYNLQSLRAY-FQLETEKGMNAHRAGADVEWTRQVL 168 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 38/225 (16%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G+ I++IA + D +++ S + D+P+ ++ I+ Sbjct: 4 YVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKRFSTYINYDKPVPAFIQSLTGISGEH 63 Query: 58 VADKPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 + + P E+V P ++VAHN FD + L E G I T++LAR Sbjct: 64 LKNAPLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPVIDTVELARI 123 Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQM-- 161 P Y L KT + P H+A D T AL ++ + SG +E + Sbjct: 124 CLPSEDSYRLSDLAKTVQATHTAP-----HQADSDVEATRALFNELFDKISGLPSETLDH 178 Query: 162 ------------ADITGRPSLMTT-FTFGKYRGKAVSDVAERDPG 193 +I T F F +YRG A+ V Sbjct: 179 LISLSPHFKSDITEILRECRQHTVAFGFDRYRGMAIKSVHPHRKD 223 >UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4K5K3_PSEF5 Length = 203 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 25/202 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +ID ET G+ EIA V + G+IV L+ + + I+ AM Sbjct: 4 IAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLMNAGVRVPAFIEQLTGISNAM 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 + P E V + + G +AHNA+FD++ + C++ LARRL Sbjct: 64 LRSAPPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLARRL 123 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-------TAE 159 P + + P HRA+ D + A L+ + + + Sbjct: 124 MPAAPNHKLGTLTSF---AGLPHTGQAHRAMADAEMAANLVAHLAGELRHKHGLRELSHD 180 Query: 160 QMADITGRPSLMTTFTFGKYRG 181 + + P+ ++RG Sbjct: 181 FLCKLQKVPAAKVPEHLKRHRG 202 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 23/183 (12%) Query: 1 MLRIIDTETC---GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++IA V + KI+N S L+ P I + + I M Sbjct: 33 IYAVVDLETTRTTSESGRIIQIAIAFVQNKKIINQFSTLINPHESIPRNVVQLTGINAEM 92 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 VA P E+V +VAHN +FD L + I T+ L++ Sbjct: 93 VAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQI 152 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161 +WP + + V P H+A D TA LLI I N T + + Sbjct: 153 VWPTAPGFRLVDLTSYLALVHGRP----HQADSDALATAELLIQIFNRLESLPMVTLQSL 208 Query: 162 ADI 164 D+ Sbjct: 209 VDL 211 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I++I V V DG+I+N + P I + + I + Sbjct: 18 IYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIINHFETKINPREKIPRSIVQLTGIEDK 77 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 V P ED+ I +VAHN +FD L P + I T+ L++ Sbjct: 78 DVRKAPLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLSQ 137 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 L P K + + L+++ H H A+ D TA LL D++ T E+ Sbjct: 138 ILLPTAKSFRLRDLTS-SLHIEHD---HPHSAVSDAEATADLLNDLLKRVQELPTLTLEK 193 Query: 161 MADIT-GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRW 197 + + P + + + S + Y+ Sbjct: 194 ITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEELYVSH 231 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 26/184 (14%) Query: 2 LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D E G I++I V +GKIV+ V P RPI + IT+ Sbjct: 6 YAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQ 65 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V + P D++ Y +VAHN FD L PE+ + T+ L++ Sbjct: 66 VQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQI 125 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++ K Y L K+ P H A D TA LLI I T E+ Sbjct: 126 VFSFTKGYRLRDLTSYLKIEHDDP-----HSADSDAIATANLLIAIKKNLQQLPIVTLER 180 Query: 161 MADI 164 + ++ Sbjct: 181 LVEL 184 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 23/209 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ID E+ G ++ I EIA + V DG++V LV P +PI P + I++AMV Sbjct: 7 LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66 Query: 59 ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 A+ P E D + +VAH+A FD + E +CT+KL+R L+ Sbjct: 67 AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ AL + L HRA+ D + + + +G+ E +A Sbjct: 127 PEHHRHGLDALIERHGLVCAA-----RHRAMGDVEVLWQFVRGL--EAGFAPEVLARAAA 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 R T G G + + + YL Sbjct: 180 RAMKAPTQPPGLPEGM-LEALPDAPGLYL 207 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 14/162 (8%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL IVE+ V V DGK LVRP RP+ + ++ + +A + Sbjct: 5 FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIK 111 A++P +V P + G+E V H+ FD L G + T+ LAR + PG+ Sbjct: 65 AERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLP 124 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 + L L++ PG HRA+ D A L ++ Sbjct: 125 SYRLELL-CAHLDLPERPG---HRAMEDARAAAGLFTALLER 162 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55 + + DTET GL + IV+I ++ ++DGK+V LV P PI + IH IT+ Sbjct: 273 VYCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITD 332 Query: 56 AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104 MV +P I + ++ VAHNA FD L + T+ ++ Sbjct: 333 KMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVLVSA 392 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 ++ + + + +L ++ H AL D +TA + ++ Sbjct: 393 IIFGTTERHMLDVV-CERLGIRIEKK-DRHTALGDARVTAEAMKRML 437 >UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64 Tax=Staphylococcaceae RepID=A5IU60_STAA9 Length = 184 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 18/165 (10%) Query: 2 LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET G + I + V VID +I LV P S Q + +H I V + Sbjct: 6 FVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVEN 65 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108 P + V P + VAHNA+FD V LP + C+ +LA+R Sbjct: 66 APTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVD 125 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +Y + + +L+ HH AL D A + ++ Sbjct: 126 SYRYGLKHMMEFYQLDFHG-----HHDALNDAKACAMITFRLLKN 165 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 24/227 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET G + +IA+ + G+IV V P +PI + + I + V Sbjct: 57 VVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFVTFVNPGKPIPEEVARLTDIHDEDV 116 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108 AD P +D + + G VAHNA+FD+ P WI ++ LAR P Sbjct: 117 ADAPSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLWIDSLDLARIALP 176 Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 +K + + K V T HRA D A ++ + + Sbjct: 177 RLKSHRLIDIVKAFDAPVST------HRADADVEALCAAYRIMLAAIAKMPKDLVSYIAE 230 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 + ++ G D+ ++ + + TL+ Sbjct: 231 LADADSWP----TGAVFKDMTNFQQAVCEAKADSPAVLEKKFPFTLR 273 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET GL ++EI++ + +I+ V P PI + + IT+ V Sbjct: 19 IVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDV 78 Query: 59 ADKPWIED---VIPHYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPG 109 P ++ + + G +AHNA+FDR + +PG WI T+ L+R P Sbjct: 79 KGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPR 138 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA----LLIDIMNTSGWTAEQMADIT 165 + ++ + HRA D LL+ +MN ++A + Sbjct: 139 LSSHKLS-----SMAEAFGTMKVTHRASDDVDALCGMWRILLLGLMNLPRGLLAKLASMH 193 Query: 166 GR 167 Sbjct: 194 DN 195 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 21/166 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL I+EI V++I+ + P+R I + IH I+E Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE----------WICTMKLAR 104 + DKP DV + ++ V HNA FD + L G+ + T+ LAR Sbjct: 68 LEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLAR 127 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + + G S AL K ++++ H AL D + A + +++ Sbjct: 128 KKFVGSPASLNALCKRFDISLEGREL---HGALVDAQLLAKVYVEL 170 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 24/176 (13%) Query: 6 DTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET G +++IA V + D +I + + P + I + IT V D Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDWEIERTYTKFINPGKAIPSFIQDLTHITNEDVKDS 61 Query: 62 PWIED---VIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWPG 109 E+ I +VAHNA FD LP+ G+ + T++LA+ L+P Sbjct: 62 YPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKILFPM 121 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQM 161 + LN++ + HRA D TA L +++N T EQM Sbjct: 122 SLGFKLGDLAAD-LNIELA---NAHRADDDARATAELFKCCWKELLNLPQLTLEQM 173 >UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae SP23-BS72 RepID=A5MUE3_STRPN Length = 308 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%) Query: 2 LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET +G + I V IDG+ V+ L+ P+ S + + IH I V Sbjct: 5 FIALDVETANSFRGSLCSIGLVKFIDGQEVDSFYTLINPEEKFSSRNIKIHAIKPEDVIG 64 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108 P +V I ++ + VAHNA FD L ++ ++ C+ ++ + + Sbjct: 65 APTFPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQVCKIILT 124 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADITGR 167 + + L L HH AL D +L++I+ S T+ +M G Sbjct: 125 DLPNHKL-----HTLAEHFKISLDHHNALSDARACGLILLEILKLSKQTSIRKMLKNLGY 179 Query: 168 P--SLMTTFTFGKYRGKAVSD 186 P L+ F K + ++D Sbjct: 180 PELGLIGKHGFVKNKSTYIAD 200 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 152 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 22/161 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL IVEIA V + G++V+ + LV P R P +H IT M+ Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEML 94 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + P DV VAHNA F+ + + P +CT++LAR++ Sbjct: 95 SGAPTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQV 154 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + ++ + + H AL D TA LL Sbjct: 155 LAAPNFQLVSCCTVYGIELH-----DAHTALGDTRATAQLL 190 >UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2 Tax=Campylobacter RepID=C6RD51_9PROT Length = 311 Score = 152 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 24/191 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D ET G G I+EI ++ + +G+I+ V + + IT + Sbjct: 72 IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVYAP-YVPENISELTGITAEHL 130 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P + V+ + G +VAHN FD + E+ +CT+ LARR Sbjct: 131 KNAPSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGYGELLNRKLCTIDLARRT 190 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163 KY L + ++ HHRAL D A + + + + T E + + Sbjct: 191 IASPKYGLGTLKEILGIDNT------HHRALSDAIAAAEIFKYSLQKLPSEVRTTEDLIE 244 Query: 164 ITGRPSLMTTF 174 + M Sbjct: 245 FSKSAKTMKRL 255 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 5 IDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET GL ++E+A+V +++G I L+ + PI IH IT ++A Sbjct: 16 VDVETTGLSPRRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTVVQKIHGITPELLAG 75 Query: 61 KPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109 + E V P + GS +AHNA FD + + CT+ +R+ +P Sbjct: 76 EKPPEAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLAFSRKKFPQ 135 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +K + L P G+ HRA D +TA + I NT Sbjct: 136 LKNHKLENVARHVLG-GMPKGIKLHRASGDALLTAMIWQVIENTQ 179 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 17/162 (10%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET GL ++EIA+ + +IV+ V+P I + + IT V Sbjct: 47 VIVLDTETTGLSHRDSELIEIAAARLRGREIVDRFDTFVKPSGLIPEEITKLTSITNVDV 106 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE------WICTMKLARRLWPG 109 A P D + + G VAHNA+FDR + ++PG WI ++ L+R P Sbjct: 107 AHAPSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSDIWIDSLALSRIALPR 166 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + +A+ ++ HRA D + ++ Sbjct: 167 LASHKLAV-MAELFGCESVS----HRANADVEALCGVWRILL 203 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 21/162 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++I +V + DG+++ S L+ P+R I AI I Sbjct: 8 IAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHSMLLNPERNIPTHITAITGIQSDQ 67 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 V D P V ++VAHN FD L + + T++LA+ Sbjct: 68 VQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPALDTVQLAKIF 127 Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 P N+ L + LN Q H AL D +TA LL Sbjct: 128 LPQAPGFNLQDLSQFFGLNFQ-----DAHDALGDARMTAHLL 164 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 25/201 (12%) Query: 3 RIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G + I+EI + + GK++ V P+ + P + I +M+ Sbjct: 25 VLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSFVDPETVLPPFIQKLTGIAPSMLR 84 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 P +V + Y VAHNA FD L + +C++K +R L+P Sbjct: 85 GAPLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKPLCSVKFSRSLYP 144 Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMA 162 K + + K +L P + HRAL D + + G T + Sbjct: 145 QFKRHGLDQIIKRFQL-----PIENRHRALDDAEMIQRFFLKSSALFSDEEIGATCASLL 199 Query: 163 DITGRPSLMTTFTFGKYRGKA 183 P L+ K A Sbjct: 200 KNPALPPLLKASDIKKLPASA 220 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 152 bits (384), Expect = 8e-36, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET G I EI + V +GK+++ S LV P + I + I + MV Sbjct: 6 FAITDIETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMV 65 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 + P ++ +VAHN +FD ++ + + +CT++L ++L Sbjct: 66 FNAPQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLI 125 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 PG+ YS + + + P + HRA DC T L + Sbjct: 126 PGLFSYSLGNICTSINI-----PHIDRHRAKGDCDATVTLFQRCI 165 >UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 Tax=Alphaproteobacteria RepID=C6B6E1_RHILS Length = 262 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 24/234 (10%) Query: 2 LRIIDTETCGLQ-GGIVEIASVDVIDG-----KI-VNPMSHLVRPDRPISPQAMAIHRIT 54 +R++D ET G + E+ DV+ G ++ S L+ P RPISP+ MAIH I Sbjct: 19 IRVVDLETAGNGLNDVCEVGWQDVVLGHDGGWQVDEERGSLLINPGRPISPETMAIHHIV 78 Query: 55 EAMVADKPWIEDVIPHYYGSE----WYVAHNASFD-RRVLPEMPG--EWICTMKLARRLW 107 +A VA P+ +++ E AH ASF+ R P G WICT K A RLW Sbjct: 79 DAEVATAPFWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTWKCALRLW 138 Query: 108 PGIKYSNMALYKTRKL--NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 P + + + + ++ + GL HRA+ D Y+TA L D++N S T EQ+ + Sbjct: 139 PELPRFSNQMLRYLRMPEGLVHAIGLPAHRAMPDAYVTAHHLRDMLNES--TFEQLVKWS 196 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 P L+ G RGK+ D + L +LR + + L Sbjct: 197 SEPGLLPRVPSGPERGKS------WDRLDIAALQAFARDRDADLRFSAETELRR 244 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 86/212 (40%), Gaps = 30/212 (14%) Query: 2 LRIIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L +D ET G + I EI V V DG V S LVRP I + I + M Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASRIPETIQRLTGIDDDM 69 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRL 106 VAD P ED+ +VAHNA FD RR +M + +CT+KL+RRL Sbjct: 70 VADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRL 129 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163 +P + + L + L V HRAL D + I G + + Sbjct: 130 FPDHRRHGLDHLIERHGLAVA-----DRHRALGDARLLWQFWQKIHERFPPGHIDAAVRE 184 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + G PSL + ++D+ + YL Sbjct: 185 LIGHPSLPPHLDP-----EQIADLPDTPGVYL 211 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 37/177 (20%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + D E GL I+ IA V V++G+++ ++ P RPI P ++ H IT+ Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 56 AMVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLW----- 107 V DKP IE V+P + G VAHNA+FD + + E A + Sbjct: 569 DDVQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKERE-------AGVRFDNPVL 621 Query: 108 -----------PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +S AL + + H AL D TA LL+ I+ Sbjct: 622 DTLLLSALLDGDEEDHSLDALCDRYGIAITG-----RHTALGDTLATAELLVRIIER 673 >UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia RepID=DPO3E_RICBR Length = 229 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 28/211 (13%) Query: 3 RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 I+DTET GL IVEI ++++++ + + P+R + +A IH I+ Sbjct: 7 IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101 + DKP + + V HNA FD + L I T+ Sbjct: 67 LKDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLV 126 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 +AR ++PG KYS AL K K++ G H AL D + A + +++ +A +M Sbjct: 127 MARSMFPGSKYSLDALCKRFKVDNS---GRQLHGALKDAALLAEVYVELTGGR-QSAFKM 182 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDP 192 D + + + ++ + +A ++ P Sbjct: 183 LD---KAAKINNLSYNRLDSQAHRNIPVIKP 210 >UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HKJ8_GLUDA Length = 269 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 109/236 (46%), Gaps = 27/236 (11%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDV-IDGKIV-----NPMSHLVRPDRPISPQAMAIH 51 +R+ID ET G GGIVEI DV D P + L P PI+PQ MAIH Sbjct: 15 FVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIH 74 Query: 52 RITEAMVADKPWIEDVIPHYY----GSEWYVAHNASFD----RRVLPEMPG---EWICTM 100 IT+A V D P ++ P AH ASF+ R LP WICT Sbjct: 75 HITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTY 134 Query: 101 KLARRLWPGIK-YSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 K A RLWP +SN L +R+ ++ G HRA D Y+TA L D++ + T Sbjct: 135 KCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDMLALA--TV 192 Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 EQ+ + P+L+T G RG+ + ++A G L L P+L TL+ Sbjct: 193 EQLLRWSREPALLTRVPHGPLRGRQIRNLAT---GDLDRLLAEDRRRGPDLAFTLR 245 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+EI ++ V DGK+ ++P ISP + I+ MV Sbjct: 39 YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 98 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A VI + + + HN FD I T+K+A+++ Sbjct: 99 ASARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMGIDTLKIAKKVH 158 Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 P ++ S AL + K+ + HRA +D TA L + Sbjct: 159 PELESKSLSALCEHYKIENKA-----AHRAYFDALATAKLYQTL 197 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G G I++I + + +I++ V P +PI + I++ Sbjct: 7 FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIIDHFESFVNPAQPIDRNIQQLTHISQKE 66 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARR 105 V + P+ E++ P + +AHN +FD R PE+ I T++LA+ Sbjct: 67 VKNAPYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQLAQI 126 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 L P Y + L + + + HRA D + TA L + + Sbjct: 127 LLPTAPGYRLLDLTTYLNITLN-----NAHRANADAHATALLFLSL 167 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 25/180 (13%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRP-DRPISPQAMAIHRITEAM 57 + DTET GL+ ++EI V++++ + P R + P A+A+H I+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE----------MPGEWICTMKLAR 104 + DKP +++ + VAHNA FD + + T+ LAR Sbjct: 64 LLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALAR 123 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN----TSGWTAEQ 160 R P S AL K ++ H AL D I A + I+++ G T E Sbjct: 124 RKHPIGPNSLDALCKRYGIDNSHRTL---HGALLDAQILAEVYIELIGGKQTALGLTMES 180 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 24/209 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + +D ET G I EI V+V IV L+ P I P + I++ MV Sbjct: 33 IVFVDLETTGADAQRDRITEIGVVEVGPDGIVE-WETLLDPGMSIPPFIQRMTGISDDMV 91 Query: 59 ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P E + + +VAHNA FD L + +CT++L+R L+ Sbjct: 92 RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSLF 151 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + ++ AL L HRAL D + I + ++ E + Sbjct: 152 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKI--HATYSVELVEAAVR 204 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + G A+ DV Y+ Sbjct: 205 TLVRRASLPAG-LEETALEDVPASPGVYI 232 >UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1 Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE Length = 289 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 24/191 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D ET G G I+EI ++ + +G+I+ V + + IT + Sbjct: 72 IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVHAP-YVPENISELTGITAEHL 130 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P + V+ + G +VAHN FD + E+ +CT+ LARR Sbjct: 131 KNAPNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGYGELLNHRLCTIDLARRT 190 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163 KY L + +N HHRAL D A + + + + T E + + Sbjct: 191 IASPKYGLGTLKEILGINNA------HHRALSDAIAAAEIFKYSLQKLPSEVKTTEDLIE 244 Query: 164 ITGRPSLMTTF 174 + M Sbjct: 245 FSKSAKTMKQL 255 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G+ ++EI +V++ID ++ + P R P+A+ IH +T+ Sbjct: 6 VVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEF 65 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 + D+P +V + G + HNA FD L + + T+ ARR Sbjct: 66 LQDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARR 125 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 PG K +L + + H AL D I A + + + Sbjct: 126 RHPGQKNDLNSLCRRYSVENSHREL---HGALLDTRILAEVYLAM 167 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 21/178 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56 + D+ET GL +V++ +V V++GKI+ LV P R I P + A+H+I++A Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISDA 332 Query: 57 MVADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105 MVAD P + + VAHNA FD L + T+ L+ Sbjct: 333 MVADAPGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHLSAV 392 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI---MNTSGWTAEQ 160 ++ G + +LNV P + H L D TA L+ + + G+T + Sbjct: 393 VFGGSAEHTLD-ALCDRLNVHIPDDV-RHTGLGDALATAKALVALIPVLEARGFTTFE 448 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 27/208 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET G I+E+ ++ + +G++V S L +P R + + + I+ M+ Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEML 81 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 A P + DV P + G V HN FD L + + + L+R+L Sbjct: 82 ASAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKL 141 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID---IMNTSGWTAEQMAD 163 P + + + N+ HR+L+DC T + + ++ Sbjct: 142 LPDLTSHKLCRV-SSHFNICVEGM---HRSLFDCKTTFECFEKCRILAKERYGQVDNLSQ 197 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERD 191 + RP T + KA + E D Sbjct: 198 VF-RPIKRTPCP----KLKACDILPECD 220 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKI-VN-PMSHLVRPDRPISPQAMAIHRIT 54 + +IDTET G I+EIA++ + GK+ V+ LV P I IH + Sbjct: 4 VYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLK 63 Query: 55 EAMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKL 102 V +P I DV P + G+ V H+ D + + ++I T+K+ Sbjct: 64 NEDVTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKI 123 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 A+ L+ YS L K K+ HRAL D +T + + ++ G Sbjct: 124 AKDLFKEGSYSLAELAKRLKI-----KDAPTHRALDDARVTGKVFLAMVKKLGG 172 >UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinetobacter RepID=B7I2S0_ACIB5 Length = 234 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 22/228 (9%) Query: 3 RIIDTETCGLQGGIVEIAS--VDVIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEA 56 I+DTET L G +EIA +++ GK+ L + PIS AMA+H I E+ Sbjct: 10 IILDTETHTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAVHHILES 69 Query: 57 MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGI 110 + ++P + +P + + + HN +D + + ICT+ LAR+ WP Sbjct: 70 DLENQPHYKTFKLPD--TTTYIIGHNIDYDIAAIARCGVDVSHIKPICTLALARKTWPDA 127 Query: 111 KYSNMALYK---TRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMADITG 166 + N++ ++ + HRA D +TA +L+ I+ + + E++ ++ Sbjct: 128 EAHNISALIYMISQGSSKARELLKGAHRADADIILTANILMHIVYHLNIHDIEELYRVSE 187 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 + TT FGK++G A++++ + Y++WL D + LR L+ Sbjct: 188 EARIPTTINFGKHKGTAIAELPK---DYIQWLLRQ-DELDVYLRKALE 231 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 31/215 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID E GL I+EI + V G+IV+ +S LV P + I + + IT++ V Sbjct: 10 YTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVDTISTLVNPKQHIPQRVQELTGITDSDV 69 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 + +++ + ++ G + + N +FD L + + T+K+AR+ Sbjct: 70 ENAADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAYDTLKIARKCL 129 Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + + L + ++ + + HRAL D T + ++ + D G Sbjct: 130 PAEQSKKLEDLCEYFGVSRK-----NAHRALDDAIETKQIFEKLL--------ALMDEKG 176 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201 P Y+ K + LR L Sbjct: 177 EPVESKPLV---YKAKKQTPATAHQVRQLRELMAE 208 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 21/171 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL+ I+EI +V DG V S LV P R + + + I + + Sbjct: 86 FVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHRRLPVYIVRLTGIRDEDL 145 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 P DV + G + +N FD L +P + + LAR L Sbjct: 146 LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPLARAL 205 Query: 107 W-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +Y A+ ++ L HRAL D TA L + ++ + Sbjct: 206 LTANGRYDLDAICRSIGLA-----RGTRHRALPDAEATAVLYLHLVERAEQ 251 >UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM Length = 178 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 20/167 (11%) Query: 2 LRIIDTETCGLQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET + I I V +GKI LV P+ + + I++A V D Sbjct: 4 FIVFDVETPNRKNNRISAIGITVVEEGKISKEFYSLVNPETNFDYFNVKLTGISKASVKD 63 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARRLW 107 P ++ + VAHNASFD VL ++CT+K+ R L+ Sbjct: 64 APTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTVKMGRSLF 123 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 P + + + ++ L HHRA D + A +L+ + Sbjct: 124 PDRSHKLNMVCEDFGIS------LQHHRADSDSHACAEILLRYLEAG 164 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 21/164 (12%) Query: 2 LRIIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I+++ + D +IV S VRP I + I MV Sbjct: 3 FAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDADMV 62 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 AD P +++V+ Y VAHN +FD L + G + T++L R L Sbjct: 63 ADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTIELLRIL 122 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID 149 +P I Y A+ + + HHRA D TA L Sbjct: 123 YPSITTYQLGAVTELFGIAHD-----QHHRADSDAIATAELFAQ 161 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G IVEI +V+++ + P+R + +A +H + + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104 + DKP +V + G V HNA+FD + L G + I T+ +AR Sbjct: 64 LRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAIDTLDIAR 123 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + +PG S AL + ++ + H AL D I A + ++++ Sbjct: 124 KRFPGSPASLDALCRRFGIDNTSRTL---HGALLDSEILAEVYLELIG 168 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 30/212 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVI-DGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +D ET G I EI V+V DG + LV P I P + IT+ M Sbjct: 35 IVFVDLETTGADAQRDRITEIGVVEVGPDG--IQEWDTLVDPLTSIPPFVQGLTGITDEM 92 Query: 58 VADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V +P + + +VAHNA FD L + +CT++L+R L Sbjct: 93 VRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSL 152 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA--EQMAD 163 +P + ++ AL L HRAL D + I + Sbjct: 153 FPSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHEIYSVDLVESAVTS 207 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + SL A+ DV +R YL Sbjct: 208 LVKHASLPAGL-----EEAALDDVPDRPGVYL 234 >UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MC14_PARUW Length = 216 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 27/208 (12%) Query: 16 IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYY--- 72 ++EIA+ D + + V P PI P++ AIH IT+ MVA+ DV + Sbjct: 1 MIEIAAYDPVQNR---RFEKFVHPGFPIPPESTAIHHITDEMVANAGSFADVGAEFVEFC 57 Query: 73 -GSEWYVAHNAS-FDRRVLPE--------MPGEW--ICTMKLARRLWPGIKYSNMALYKT 120 G +AHN FD L +P W + ++K ARR + + + Sbjct: 58 AGEVVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQFLR- 116 Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 + + HRAL D + + +++ + + D+ RP + FGK++ Sbjct: 117 ---EIYGITANNAHRALDDVIVLERVFRSMVDDL--EIQDVFDLLNRPRAIQHMPFGKHQ 171 Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPE 208 G+ ++ + + Y+ WL PE Sbjct: 172 GQPLNKIPK---NYISWLATTGAFDKPE 196 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 149 bits (378), Expect = 4e-35, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 20/162 (12%) Query: 5 IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 ID ET G IVEI ++ V +G+ V S L+ P RP+ + ++ +T+A + ++ Sbjct: 89 IDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLINPQRPLPEEITRLNGLTDADLRNQ 148 Query: 62 PWIEDVIPH---YYGSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARRLWP 108 P ++ V+P + G++ + HN + FD L + + I T+ L R L+P Sbjct: 149 PTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMRHIGNKTIDTLPLDRALYP 208 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + R+ + HRA D TA + Sbjct: 209 EEPKHRLVDI-IRRFGIAQTES---HRAADDALQTAQCYETM 246 >UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8CUQ0_OCEIH Length = 195 Score = 149 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 2 LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ID ET + + V + D +I++ L+ P + IH ITE V + Sbjct: 4 FAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQE 63 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108 P ++ P Y +AHNASFD VL + ++ +CT+K++R +WP Sbjct: 64 APTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRLIWP 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163 ++ + + L+HH A+ D +A + + + T E+ + Sbjct: 124 QLENHKL-----HTVANHHGIALNHHHAMDDARASAKIFLASLAEQKIGTTEEFIE 174 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 149 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 20/169 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G+ I+E +V V+D K V+ LV P R ++P + IT M+ Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQLVNPMRNLNPFITQLTGITPDML 70 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLP---------EMPGEWICTMKLARR 105 P ++ V+P + G + + HN FD + + +P I T++++R Sbjct: 71 EPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQMSRS 130 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 ++P + ++ ++ + HRAL D T + + Sbjct: 131 MYPQYNRHRLVDL-IQRFDIA---DVEEHRALSDAEQTQMCFEYMRDEQ 175 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 149 bits (377), Expect = 5e-35, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 19/167 (11%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL I+EI + V +I L+ P I + I IT AM Sbjct: 11 IYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAM 70 Query: 58 VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + +P +E +I ++ V HN FD L ++ ICT++L+++ Sbjct: 71 LVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLELSKK 130 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L P +K ++ N++ HRA D +T + +M+ Sbjct: 131 LIPNLKSYKLS-AVADYFNIKYERL---HRAKDDALLTYNIFNKLMD 173 >UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter RepID=B9KCR0_CAMLR Length = 254 Score = 149 bits (377), Expect = 6e-35, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 24/186 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D E+ G G I+EI +V + + K ++ V+ + I + I+ MV Sbjct: 71 IFCVVDIESTGGIKSGQILEIGAVKIQNYKEIDRFESFVKVE-SIPENITELTGISLDMV 129 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + P ++ V+ + + +VAHN FD + + + +CT+ LA++ Sbjct: 130 ENAPSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLCTIDLAKKC 189 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW---TAEQMAD 163 KY AL + + HHRAL D + +L + + E++ Sbjct: 190 IESPKYGLDALKEFLCIE------SKHHRALSDALAASEILKYCLKKIPFYIKNTEELLH 243 Query: 164 ITGRPS 169 + + Sbjct: 244 FSKQAK 249 >UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga RepID=C7M4L1_CAPOD Length = 442 Score = 149 bits (377), Expect = 6e-35, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G + GI +IA +I + L+ P+RPI + I M Sbjct: 1 MYAILDIETTGGKYNEEGITDIAIYQFNGHEITDQFISLINPERPIQEFVTKLTGINNKM 60 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 + + P +V I V HNA+FD R+L + +CT++L+ RL Sbjct: 61 LRNAPKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELSERL 120 Query: 107 WPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 P YS L ++ + P HRA D T L ++ Sbjct: 121 IPNKESYSLGKLVRSLGI-----PVSDRHRASGDALATLKLFKYLLEK 163 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 22/207 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E V D + + ++P PI + + I+E V Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLFIKPPVPIPAHIVELTGISEEHV 458 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 + + I + G VAHNA FD L + I T+ LAR + Sbjct: 459 RNAKSFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKPLDNPVIDTLDLARSM 518 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 Y + ++ + HRA YD + A ++++N + + ++ Sbjct: 519 QDRKGYRLGQIARSYGIRYDEDV---AHRADYDAEVLANTYMNMLN----DLKHIQNLAA 571 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193 + +F K R K V+ + + G Sbjct: 572 LQDMQNARSFTKVRAKHVTILVKNAAG 598 >UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEC5_PSYWF Length = 237 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 23/235 (9%) Query: 3 RIIDTETCGL-QGGIVEIA--SVDVIDGKIV---NPMSHLVRPDRPISPQAMAIHRITEA 56 I+DTET GL + E A + + + KI P S P +PIS +MA I + Sbjct: 4 YILDTETTGLVDPHMTEAAYSIIAINNAKIEVIQAPRSKRFNPLKPISLGSMATSHICDE 63 Query: 57 MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWPGIK 111 VA +P + +P+ E+ V HN +D VL + ICT ++ L P ++ Sbjct: 64 DVAHEPPHTEFRLPN--SVEYLVGHNIDYDMAVLKNAGVTHTPKLICTKAMSSYLLPTLE 121 Query: 112 YSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT---AEQMADI 164 + +L V H H A+YD Y T +L I++ N+ G E + Sbjct: 122 SHKLVSLLYHFHRQVAREQAKHAHAAIYDIYFTQLVLGSLIELANSQGHNITDVESLYQF 181 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERD--PGYLRWLFNNLDSMSPELRLTLKHYL 217 + + T +FGKY+G+A++++A GYL+WL D++ P L + L Sbjct: 182 SEMARIPTHLSFGKYKGQAITELAASSDGAGYLKWLMGQ-DNIDPYLAEACQQAL 235 >UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria RepID=DPO3E_HAEIN Length = 256 Score = 149 bits (376), Expect = 8e-35, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 3 RIIDTETCGLQ--------GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRI 53 ++DTET G+ I+EI +V++I+ + H ++PDRP P A+ +H I Sbjct: 8 IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67 Query: 54 TEAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWIC---- 98 T+ M+ADKP ++V + + HNA FD + + + IC Sbjct: 68 TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127 Query: 99 TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 T+++AR+++PG + + AL ++ H AL D I A + +M T G T Sbjct: 128 TLQMARQMYPGKRNNLDALCDRLGIDNSKRTL---HGALLDAEILADVY--LMMTGGQT 181 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 21/179 (11%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET G + +VEI V ++ + L+ P++P+ P+A +++IT+ M Sbjct: 15 VFTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 +A +P +V+P + + VAHNASFD + ++ + T+ AR Sbjct: 75 LAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARE 134 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 PG+ Y+ L + ++ HRA D + ++ + M D Sbjct: 135 TLPGLQSYALQNLATQFGV-----QAVNAHRAEDDARVCMEFFKIAVSHFFEKNKDMLD 188 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 19/163 (11%) Query: 5 IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 DTET GL+ I+EI +V I+ S L+ PDR I P I+ IT+ M+ +K Sbjct: 18 FDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDMLVNK 77 Query: 62 PWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109 P +++ + VAHNA+FD L + + + T +A+ ++PG Sbjct: 78 PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAVFPG 137 Query: 110 IKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM 151 + Y+ + L +Q +H HRA D + L ++ Sbjct: 138 LGRHQ---YRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMI 177 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 23/163 (14%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRIT 54 + + DTET GL I+ I +V ++ G+I LV P RPIS ++ +H I Sbjct: 421 IYTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQ 480 Query: 55 EAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLA 103 ++ DKP IE+V+P +Y V HN +FD + + + + TM LA Sbjct: 481 PVLLQDKPPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRFDQPVLDTMLLA 540 Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA 145 + P + Y L + + H AL D ITA Sbjct: 541 AVVDPERQHYGLDELAAAFGI-----EPVGRHSALGDALITAE 578 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 28/228 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I++I V V +++N V P + I + IT Sbjct: 6 VYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVINHFETDVNPLKEIPAAISRLTGITNK 65 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 V P +DV + + +VAHN +FD + P +P + T+ L++ Sbjct: 66 RVRHAPLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVSLSQ 125 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P + L + + P H A D TA L I + T + Sbjct: 126 ILLPTATSFRLRDLSRLFNIEHDNP-----HSADSDASATAELFIFLFRRLRALPMVTLQ 180 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207 +M D+ L TT F + + + P YL ++ N L P Sbjct: 181 RMIDLQADLPLQTTTLFRVAQ-QLNEQSPRKLPDYL-YIKNGLALRQP 226 >UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM Length = 202 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 20/180 (11%) Query: 2 LRIIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVA 59 ID ET G +A+V+V DG++ + L++P + IH I+ V Sbjct: 20 YIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKDVT 79 Query: 60 DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP------EMPGEWI---CTMKLARRLW 107 D P +V + VAHNASFD VL + + CT+++AR++W Sbjct: 80 DAPTFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIARKVW 139 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI-DIMNTSGWTAEQMADITG 166 P + + + HHRAL D AA+L+ M T E++A G Sbjct: 140 PALDDHKLNT-----VGAHLNINFRHHRALDDARTCAAILLFAGMETGTDDIEELAQKIG 194 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 33/226 (14%) Query: 3 RIIDTETCGLQG--------GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53 ++D ET G+ I+EI +V++I+ ++P+R I Q+ IH I Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 54 TEAMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWI 97 T+ + DKP ++ Y + + HNA FD + + Sbjct: 68 TDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCNVV 127 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 T+ LAR+L+PG K S AL K+NV H AL D + A + + + Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVS---HRDFHSALIDAKLLAKVYTFMTSFQQSI 184 Query: 158 A-----EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 + + I L + F A D ++ YL+++ Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYV 230 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria... 289 6e-77 UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ... 239 5e-62 UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente... 231 1e-59 UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic... 223 2e-57 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 214 2e-54 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 212 9e-54 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 208 1e-52 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 208 1e-52 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 204 1e-51 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 203 3e-51 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 201 1e-50 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 200 2e-50 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 199 5e-50 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 199 7e-50 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 198 9e-50 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 198 1e-49 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 198 1e-49 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 197 2e-49 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 197 2e-49 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 195 1e-48 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 194 2e-48 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 194 2e-48 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 193 3e-48 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 193 3e-48 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 193 3e-48 UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu... 193 4e-48 UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s... 193 4e-48 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 192 5e-48 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 192 5e-48 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 192 7e-48 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 192 9e-48 UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp.... 192 9e-48 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 191 1e-47 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 191 1e-47 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 191 1e-47 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 191 2e-47 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 191 2e-47 UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip... 191 2e-47 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 190 2e-47 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 190 3e-47 UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob... 190 3e-47 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 190 4e-47 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 190 4e-47 UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact... 189 4e-47 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 189 5e-47 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 189 6e-47 UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti... 189 6e-47 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 189 7e-47 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 188 9e-47 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 188 1e-46 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 188 1e-46 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 188 1e-46 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 188 1e-46 UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo... 187 2e-46 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 187 2e-46 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 187 2e-46 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 187 3e-46 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 187 3e-46 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 186 4e-46 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 186 5e-46 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 186 5e-46 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 186 6e-46 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 186 7e-46 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 186 7e-46 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 185 7e-46 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 185 1e-45 UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi... 185 1e-45 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 185 1e-45 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 184 1e-45 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 184 2e-45 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 184 2e-45 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 184 2e-45 UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom... 184 3e-45 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 183 3e-45 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 183 3e-45 UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 183 3e-45 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 183 4e-45 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 182 5e-45 UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma... 182 5e-45 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 182 7e-45 UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 182 7e-45 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 182 1e-44 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 181 1e-44 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 181 1e-44 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 181 1e-44 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 181 1e-44 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 181 1e-44 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 181 2e-44 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 181 2e-44 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 180 2e-44 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 180 3e-44 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 180 3e-44 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 180 4e-44 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 180 4e-44 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 179 4e-44 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 179 5e-44 UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi... 179 5e-44 UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri... 179 5e-44 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 179 6e-44 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 179 6e-44 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 179 7e-44 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 179 7e-44 UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi... 179 8e-44 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 178 9e-44 UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T... 178 1e-43 UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr... 178 1e-43 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 178 1e-43 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 178 1e-43 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 177 2e-43 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 177 2e-43 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 177 2e-43 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 177 2e-43 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 177 2e-43 UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost... 177 2e-43 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 177 2e-43 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 177 3e-43 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 177 3e-43 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 177 3e-43 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 177 3e-43 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 177 3e-43 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 177 3e-43 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 176 4e-43 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 176 4e-43 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 176 4e-43 UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 176 4e-43 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 176 5e-43 UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba... 176 5e-43 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 176 6e-43 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 176 6e-43 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 175 6e-43 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 175 7e-43 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 175 1e-42 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 175 1e-42 UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm... 175 1e-42 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 175 1e-42 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 175 1e-42 UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex... 174 1e-42 UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro... 174 2e-42 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 174 2e-42 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 174 2e-42 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 174 2e-42 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 174 2e-42 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 174 2e-42 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 174 2e-42 UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring... 174 3e-42 UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete... 173 4e-42 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 173 5e-42 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 172 5e-42 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 172 5e-42 UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Prot... 172 5e-42 UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac... 172 6e-42 UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg... 172 6e-42 UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 172 6e-42 UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re... 172 6e-42 UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit... 172 7e-42 UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross... 172 7e-42 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 172 7e-42 UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 172 7e-42 UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin... 172 7e-42 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 172 8e-42 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 172 8e-42 UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact... 172 9e-42 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 172 1e-41 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 171 1e-41 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 171 1e-41 UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap... 171 1e-41 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 171 1e-41 UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl... 171 1e-41 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 171 1e-41 UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant... 171 1e-41 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 171 2e-41 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 170 2e-41 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 170 2e-41 UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly... 170 2e-41 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 170 2e-41 UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry... 170 3e-41 UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion... 170 3e-41 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 170 4e-41 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 170 4e-41 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 170 4e-41 UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph... 169 4e-41 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 169 6e-41 UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu... 169 6e-41 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 169 7e-41 UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn... 169 7e-41 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 169 8e-41 UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm... 169 8e-41 UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant... 169 9e-41 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 168 9e-41 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 168 9e-41 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 168 1e-40 UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep... 168 1e-40 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 168 1e-40 UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit... 168 1e-40 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 168 1e-40 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 168 1e-40 UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth... 168 1e-40 UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ... 168 1e-40 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 168 2e-40 UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam... 167 2e-40 UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei... 167 2e-40 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 167 3e-40 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 167 3e-40 UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte... 167 3e-40 UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur... 167 3e-40 UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid... 167 3e-40 UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacteri... 167 3e-40 UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob... 166 4e-40 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 166 4e-40 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 166 4e-40 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 166 4e-40 UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn... 166 5e-40 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 166 5e-40 UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon... 166 5e-40 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 166 6e-40 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 165 6e-40 UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb... 165 7e-40 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 165 8e-40 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 165 8e-40 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 165 8e-40 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 165 9e-40 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 165 9e-40 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 165 1e-39 UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte... 165 1e-39 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 165 1e-39 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 165 1e-39 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 165 1e-39 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 164 1e-39 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 164 2e-39 UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm... 164 2e-39 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 164 2e-39 UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog... 164 2e-39 UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax... 164 2e-39 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 164 3e-39 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 164 3e-39 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 164 3e-39 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 164 3e-39 UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco... 164 3e-39 UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingell... 163 3e-39 UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose... 163 3e-39 UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac... 163 3e-39 UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS... 163 4e-39 UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halo... 163 4e-39 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 163 5e-39 UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro... 162 5e-39 UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi... 162 5e-39 UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria... 162 5e-39 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 162 6e-39 UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr... 162 7e-39 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 162 7e-39 Sequences not found previously or not previously below threshold: >UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae RepID=EXOX_ECOL6 Length = 220 Score = 289 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD Sbjct: 1 MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 Query: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT Sbjct: 61 KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120 Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180 Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220 >UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 Tax=Enterobacteriaceae RepID=A8GD51_SERP5 Length = 222 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 131/216 (60%), Positives = 159/216 (73%), Gaps = 2/216 (0%) Query: 4 IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63 +IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI +AMAIH ITE MV KP Sbjct: 5 VIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGKPR 64 Query: 64 IEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRKL 123 I I Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N L L Sbjct: 65 IAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYALNL 124 Query: 124 NVQTPPGLH--HHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRG 181 +VQ P HRALYDCY+TAALL I+ SGWT EQMA IT +P L+ F FGKYRG Sbjct: 125 DVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKYRG 184 Query: 182 KAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 + + VA+ DPGYLRW+ +++ +SP+++ TLK+YL Sbjct: 185 QEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220 >UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae RepID=A4W6Y1_ENT38 Length = 223 Score = 231 bits (590), Expect = 1e-59, Method: Composition-based stats. Identities = 107/221 (48%), Positives = 143/221 (64%), Gaps = 6/221 (2%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 MLR+IDTET GL+GG +VE+ASVD++DG I NPMS LV+P I +AMAIH ITE M Sbjct: 1 MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60 Query: 58 VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYS-NMA 116 V P + +VI Y G++ YVAHNA FD+ LP++ WICT KLAR L P K N Sbjct: 61 VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120 Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176 L + L + P GL+ HRALYDCY+TA LL+ + + WT +M I+ PSL+ F Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180 Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 GK++G + +++A+ +PGYLRWL N D ++ T H+L Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219 >UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ3_ALIAD Length = 240 Score = 223 bits (570), Expect = 2e-57, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 22/232 (9%) Query: 2 LRIIDTETCGL--QGGIVEIASVDV---IDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 ++DTET GL +G +VE+A V+V + +IV S LV P PI P+A A+H IT+ Sbjct: 8 FVVVDTETTGLPPEGRVVELALVEVGLECEPQIV--YSALVDPGCPIPPEASAVHHITDR 65 Query: 57 MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KY 112 VA KP + V P Y G VAHNA FDR +LPE WIC+ +LA+ LW K+ Sbjct: 66 DVAGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKH 125 Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-----SGWTAEQMADITGR 167 SN L ++V+ HRAL D +TA + + +++ Sbjct: 126 SNQVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAES 182 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 P + T FGK++G + +V YL W NL +SP+LR +++ LE Sbjct: 183 PIEVQTMPFGKHKGMPLKEVP---LDYLDWALRNLQDLSPDLRWSMQRVLEQ 231 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 18/206 (8%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V + + KIV+ V P PIS + I E+MV Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMV 447 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P IE+V+P + VAHNA+FD + + + T++L+R L+ Sbjct: 448 KDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLY 507 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 +K + LHHHRA+ D TA + I ++ + Sbjct: 508 QDLKNYKLDTLAEF----FEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSEINS 563 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPG 193 + K V+ + + G Sbjct: 564 VLMEREVDVKKLPVYHVTILVKDQKG 589 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 212 bits (540), Expect = 9e-54, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++DTET G I+E+A+V V G+IV + L+ P R + P + IT AM+ Sbjct: 8 FVVVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLV 67 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107 +P ++V+P + G VAHN +FDR++L +CT++LARRL Sbjct: 68 GRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLL 127 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-----TAEQMA 162 PG+ + P + HRAL D TA +L+ ++ + T E + Sbjct: 128 PGLPAKGLDGLIRFY----QIPVENRHRALGDAEATAHVLLRLLEEARRQYGIDTLEALL 183 Query: 163 DITGR--PSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + P + R + + E YL Sbjct: 184 TFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYL 218 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 23/232 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V + DG+IV+ L++P R IS ++ I IT+ M+ Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 +K IE+V+P + G + VAHNA+FD R L + +I T+ LA+ L Sbjct: 418 ENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL 477 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 YS ++ + L HHRAL D +TA + + + + ++ Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIG--ITKLSE 530 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 +L T + + + + + G L+ L+ + + + L+ Sbjct: 531 IENLKDTIDYTALKPFHCTILVQNKKG-LKNLYKLVSDSYIKYFYGVPRILK 581 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI +V V +G+IV+ S V P I + + IT+ MV Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMV 481 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P +E V+ + VAHNA+FD + + + +I T++L R+++ Sbjct: 482 KDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMF 541 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADIT 165 P + +Y + K K+ ++ +HHRA+ D TA + + +N + + DI Sbjct: 542 PELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCINILKEKGCKTIKDIQ 596 Query: 166 G 166 Sbjct: 597 N 597 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 20/210 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V +GKI++ S V P+ PI + + I + MV Sbjct: 409 YVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMV 468 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D P IE+++P + VAHN+ FD + I T+ ++R L Sbjct: 469 IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLI 528 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 G+ +Y + K + + HHHRA+ D TA + + + D Sbjct: 529 IGLGRYKLDNVAKALGIVLD-----HHHRAVDDAECTALIFLKLCKMLEGKGIDNLDELN 583 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 R + K + + G + Sbjct: 584 RQGKQSKNLIDKLPAHHAIILVKNQVGRVN 613 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + DG+IV+ S V P I + + IT+ MV Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMV 494 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P I++V+P + G+ VAHNA+FD + + + + T+ LAR L+ Sbjct: 495 NGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLY 554 Query: 108 PGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P +K + L K ++++ +HHRA+ D TA +L + T Sbjct: 555 PDLKKVKLNLVAKHLGISLE-----NHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTL 609 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193 ++ K + +A+ G Sbjct: 610 NEKYLSNIDVKKLPLHHIIILAKNQTG 636 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 30/233 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V V GK+++ S V+P I + + IT MV Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMV 444 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P IE V + VAHNA FD L ++ + T+ L+R L Sbjct: 445 SRAPDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRAL 504 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQMA 162 P + + +HHRA+ D T+ + I+ + N T + Sbjct: 505 LPDLSNHKLNTLARH----LNVRLDNHHRAVEDARATSEIFINFLSNIKNEGIETVPGIN 560 Query: 163 DITGRPSLMT-----TFTFGKYRGKAVSDVAER-DPGYLRWLFNNLDSMSPEL 209 ++ + + T F K + + + D+ +L + + + L Sbjct: 561 RLSTKINWRELPTYHTVIFAKNK-QGLKDIYRLVSESHLNYFYRKPRILKSHL 612 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI +V ++D KIV+ + L+ P+ PI + + IT MV Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMV 461 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D P I+ V+P + G +AHNA FD + + + +I T+ AR L Sbjct: 462 KDMPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALE 521 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P +K + L K +N+ +HHRA D T + I ++N Sbjct: 522 PHLKNHKLDTLTKKYNVNL-----FNHHRACDDARATGEVFICMVNNLEQ 566 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 199 bits (508), Expect = 5e-50, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 20/169 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + +GK+V+ S V P+R I + + + I + MV Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV 472 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P IE+V+P + VAHNA+FD + + T+ L + L+ Sbjct: 473 KDAPKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLY 532 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P +K + + K + P L+HHRA+ D T +L+ Sbjct: 533 PELKRYKLNVVAKHLGI-----PLLNHHRAVEDAKTTGDILLKAFEDLK 576 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 23/194 (11%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL ++EIA+V V G+IV+ + L+ P+R + P+ + + IT MV Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMV 486 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A +P + + + + VAHNA FD L + I T+ LAR L Sbjct: 487 AGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVL 546 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162 +PG K + + + ++HHRAL D TA + + ++ + M Sbjct: 547 YPGEKNYKLKTLTQK----FSVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLDMN 602 Query: 163 DITGRPSLMTTFTF 176 + G+ + F Sbjct: 603 HLRGQIDISRVRPF 616 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 198 bits (505), Expect = 9e-50, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 22/202 (10%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M IID ET G I+EIA KI + L+ P+R I ++ I M Sbjct: 2 MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106 VAD P DV + +VAHN +FD L + + +CT++L+R++ Sbjct: 62 VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163 +PG+ YS L + ++VQ + HRA D T LL ++ +T G+ + + Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKK 176 Query: 164 ITGRPSLMTTFTFGKYRGKAVS 185 + L ++ + Sbjct: 177 NSKETLLPANLPREQFDALPET 198 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 21/171 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A+V V DG+I++ P P+S M + IT+ MV Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMV 488 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 D P ++V+ + G VAHNASFD L ++ I T++LAR L Sbjct: 489 KDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFL 548 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +P +K + L K + + HHRA+YD T LL+ ++ + Sbjct: 549 YPDLKNHRLNTLCKKFDIELT-----QHHRAIYDAEATGHLLMRLLKEAEE 594 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 23/207 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I+E+ +V G+IV+ VRP +P+ P+ + IT M+ Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDML 513 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 P + + + G VAHNA FD L E + T+ LAR + Sbjct: 514 EGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAV 573 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ ++A P + HHRA D A +L+ ++ + E +AD+ Sbjct: 574 LPHMRSHSLAALTKE----LQVPLVDHHRADADAKTAAMVLMKLLERAEG-VETVADLN- 627 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193 L + R + + + G Sbjct: 628 --RLTKGINVEQLRPYHTTVLVKTQAG 652 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 197 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET G I+EI +V + +++ S V P+ PI + + IT+ M Sbjct: 424 IYVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEM 483 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106 VA+ IE V+P + VAHNA FD + + + I T+ LAR L Sbjct: 484 VANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTL 543 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADI 164 P ++ Y L K + ++T HHRA+ D TA + +N ++ +I Sbjct: 544 LPELRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLNMILSKGILKLIEI 598 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 21/171 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V + G+IV+ S L+ P RPI I IT+ V Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A++P I++VI + G VAHNA FD + + I T+++AR L Sbjct: 487 ANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDL 546 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +P + KY L KT L ++ HHRA+ D TA + I ++ Sbjct: 547 FPDLKKYGLGDLNKTLGLALE-----KHHRAVDDSQATANMFIIFLDKYKE 592 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 29/204 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G ++EI++V V GK+V S LV P RPI A ++ I++ MV Sbjct: 17 YVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMV 76 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105 A++P V+P + G + V HN FD + L ++ +++ T+++A+ Sbjct: 77 ANEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKL 136 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA------ 158 +P ++ + L + ++ + HRAL DC + + + Sbjct: 137 CFPEWRHRRLSDLAEHYGISTRG-----AHRALTDCKMNQQVFEYLAKELEKMPAAKKQS 191 Query: 159 -EQMADITGRPSLMTTFTFGKYRG 181 E++ G P FG++ G Sbjct: 192 KEKICPECGLPMKKRNGRFGEFWG 215 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 30/213 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G++ I+EI +V V DGK V+ S L+ P +SP + IT+ M+ Sbjct: 5 YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEML 64 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 DKP+IE+V+P + G + + HN FD L + I T+K+AR+ Sbjct: 65 KDKPFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTL 124 Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 G++ L + +HHRA D +T+ L +M G T Sbjct: 125 KGLESRGLEYLCNYYGIA-----DENHHRAFNDAEVTSKLYNVLMEKFG---------TE 170 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199 P L + ++ K + + +R YL+ L Sbjct: 171 SPGLFEPYQLV-FKAKKMQPITDRQKKYLKDLM 202 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 30/243 (12%) Query: 2 LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52 ++D ET G + I EI +V V DG ++ + LV P R I PQ M + Sbjct: 40 FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTG 99 Query: 53 ITEAMVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWI 97 IT AMV+D P I+ V+P + VAHNA FD L + Sbjct: 100 ITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVL 159 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-W 156 CT++LARR+ + ++ L +L HRAL D T +L ++ G Sbjct: 160 CTVRLARRVLSREEAPSVRLASLARL--FAVTTQPTHRALDDARATVDVLHALIERVGNQ 217 Query: 157 TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHY 216 AD+ G + T + R + +++ R PG + + + + + L+ Sbjct: 218 GVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRR 274 Query: 217 LEN 219 + Sbjct: 275 VAQ 277 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 20/171 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G Q + E+ V V++G+IV+ L+ P R I + I+ MV Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMV 632 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 ++ P +DV I + +VAHN +FD +CT++++R+ Sbjct: 633 SNAPVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYL 692 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 PG YS L ++++ +HHRAL D A + I + Sbjct: 693 PGHSSYSLGKLCAALDIDLE-----NHHRALDDAKAAAHVFRLIQEKRQTS 738 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 27/202 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ ++EI++V V +GKIV+ S LV P RPI A +++ I++ MV Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMV 76 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHN-ASFDRRVLPE---------MPGEWICTMKLARR 105 + E V+P + G + HN A FD + L + ++I T+ +A+ Sbjct: 77 ENARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKL 136 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-----WTAE 159 +P K+ + L + ++ + HRAL DC + + + SG T E Sbjct: 137 CFPEWKHRKLSDLAEHYGISTKG-----AHRALADCRMNQQVFELMAKESGGTSAKQTEE 191 Query: 160 QMADITGRPSLMTTFTFGKYRG 181 ++ G FG + G Sbjct: 192 KICPRCGLALKKRNGRFGGFWG 213 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 33/223 (14%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G I+EI V + +I++ + P +PI P + I++ Sbjct: 4 FVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGISDDD 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 VAD P + I + +AHN +FD L + + + T++L+R Sbjct: 64 VADAPLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQVLDTVELSRI 123 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L+P Y L L HRAL D Y+TA L +M+ + + Sbjct: 124 LFPTAPGYKLSQLSDHFNLQHD-----DPHRALSDAYVTAKLFQKLMDKINQLPYETIE- 177 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207 + K G +SD+ E L L ++D S Sbjct: 178 ----------QWLKLEGAFISDIKEILLNRLDELAFSIDQDSA 210 >UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TC4_PSEA6 Length = 769 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 21/172 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI +V VID K+V+ S L+ P+R + + I+ MV Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMV 663 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P +VI + +VAHN +FD +CT++ R+ + Sbjct: 664 EDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRKYY 723 Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 PG YS L K L++ +HHRAL D A LLI ++N T Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI-MVNEKKHTV 769 >UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment) n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM Length = 821 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 20/209 (9%) Query: 3 RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + D ET G I+EI +V + +GKI++ M V P PI + + I ++MV Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVM 578 Query: 60 DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 D IE+V+P + VAHNA FD + I T+ L+R L P Sbjct: 579 DAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLP 638 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 + ++ + K K+ + LHHHRA+ D TA + + + + Sbjct: 639 RLNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYLKELEILEQRGVSSLEEIDS 693 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 + K + +A+ D G + Sbjct: 694 LEVDQVGKVRKLPSYHIILLAKNDIGRIN 722 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 33/218 (15%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I E+ +V V G++V + LV P PI + IT++MV Sbjct: 26 FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPANITLLTGITQSMV 85 Query: 59 ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPG---------EWICTMKLA 103 A P +E+V+P VAHNA FD L + T++LA Sbjct: 86 ASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLA 145 Query: 104 RRLWP--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----T 157 R + + +A P +HRAL D T +L ++ + Sbjct: 146 RAVLARGETRNHRLATLAAY----FGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSS 201 Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 E++ +T P+ + R D+ E Y+ Sbjct: 202 VEELRAVTKPPTKAQ-----RSRRHLAEDLPEEPGVYV 234 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 20/210 (9%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V+ G+I S V P+ PI + + I + MV Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV 534 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D P IE ++P + G VAHNA FD + + I T+ LAR L Sbjct: 535 IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILL 594 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + ++ + K ++++ +HHRA+ D TA + + + + D Sbjct: 595 PQLNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVN 649 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 + + T K +A D G + Sbjct: 650 QMGQASPETIMKMNTYHAIILATNDIGRIN 679 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 192 bits (489), Expect = 7e-48, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 26/216 (12%) Query: 2 LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52 ++D ET G + I EI +V V G ++ + LV P I PQ + + Sbjct: 43 FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTG 102 Query: 53 ITEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTM 100 IT AMV + P I+ V+P + G VAHNA FD L +CTM Sbjct: 103 ITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTM 162 Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAE 159 +LARR+ + ++ L +L HRAL D T +L ++ G Sbjct: 163 RLARRVLSRDEAPSVRLAALARL--FAVASNPTHRALDDARATVDVLHALIERVGNQGVH 220 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 A++ R L + + + R YL Sbjct: 221 TYAEL--RSYLPNVTQAQRCKRVLAETLPHRPGVYL 254 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 192 bits (488), Expect = 9e-48, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 23/235 (9%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI ++ GK + S + P I ++ IT A V Sbjct: 23 FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADV 82 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106 P + VI + +VAHNA FD L + + + T+ LARR+ Sbjct: 83 ETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRV 142 Query: 107 WPGIK--YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + ++ P HRAL D T +L +M ++ Sbjct: 143 LDRSQVGSFKLSQLARY----VGSPNRPAHRALDDAIATVDVLHYLMERLA--VYEVQTA 196 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + T + ++D A PG + N D + L L+ L Sbjct: 197 SELVHYSPTVAPEVRAKRHLADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQ 251 >UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D3J4_9RHOB Length = 240 Score = 192 bits (488), Expect = 9e-48, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 22/235 (9%) Query: 1 MLRIIDTETCGL----QGGIVEIASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRIT 54 ++R+ID ET G ++E VDV IVNP L +P PI P MA+H IT Sbjct: 8 IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67 Query: 55 EAMVADKPWIEDVIPHYYGSE----WYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110 + VAD P V ++ + AHNA F++ +WICT K A +WP Sbjct: 68 DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127 Query: 111 KYS-NMALYKTRKLNV-----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 N AL ++ HRAL D Y+TA +L++++ T E++ I Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTAHILLELLKH--KTPEELVQI 185 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + P+L+TT FGK++G S+ YL W+ N + + + + +++L+ Sbjct: 186 SEYPALLTTLRFGKHKGMKYSEAPT---DYLDWIVNKS-DLDEDTKFSSRYWLKK 236 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 27/186 (14%) Query: 2 LRIIDTETCGLQ-----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 ++D ET G I +IA+V V DG+I+ S + P R I P + I E+ Sbjct: 5 YVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDES 64 Query: 57 MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLAR 104 MV P +DV P +VAHN FD L E + T++LA+ Sbjct: 65 MVKQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 124 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P Y L K +L HRA D TA L + +N T + Sbjct: 125 ILLPTADSYKLRDLAKQHELEHD-----QPHRADSDALATAELFLQFLNEIEKLPLVTLQ 179 Query: 160 QMADIT 165 + +++ Sbjct: 180 SLYELS 185 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 20/167 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI V ++ GK V+ L+ P R I + I++ MV Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMV 602 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 AD P +V I + +VAHN +FD + + +CT++ RR Sbjct: 603 ADAPLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTH 662 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 PG+ YS L K ++++ HHRAL D A LL Sbjct: 663 PGLSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELLKLAFEK 704 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 24/194 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI + V GKI + LV P+ I + + I IT MV Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMV 408 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D P IE+V+P + V N FD + E ++ T+ +AR L+ Sbjct: 409 KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALF 468 Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMA 162 +K S + + ++ P +HHRA D TA + I + M G + Sbjct: 469 SDMKKFSLDKIARKLEI-----PAFNHHRASDDARATAQIFIKMFKMIMEEDGINLSTIN 523 Query: 163 DITGRPSLMTTFTF 176 + F Sbjct: 524 KLKSHWPKSKHEYF 537 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EIA+V + G I LV P RPI P + I++AMV Sbjct: 6 YVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMV 65 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110 + P + +V+P + V HN +FD L + G + T+ L+R L+P + Sbjct: 66 REAPPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCL 125 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + T HHRAL D TA LL ++ Sbjct: 126 ASHRLDYMSKY----LTLEATGHHRALDDVLTTARLLENL 161 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 26/185 (14%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 IID ET G I+++ V + +GKIV+ S P+R I P + ITE M Sbjct: 5 FVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQM 64 Query: 58 VADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105 VAD P + ++VAHN SFD + LP G I T++LAR Sbjct: 65 VADAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARI 124 Query: 106 LWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++P Y L K ++ H+A D +TA L I ++N T + Sbjct: 125 VFPTAESYKLGDLAKQLHIDHD-----QPHQADSDAEVTAKLFIALLNRLRQLPFITLQH 179 Query: 161 MADIT 165 + ++ Sbjct: 180 LKRLS 184 >UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HRT4_9SPHI Length = 456 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 21/198 (10%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G I EIA + K++ L+ P++ I + I +MV Sbjct: 3 FAIVDIETTGGAASTCGITEIAILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSMV 62 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 +D P E++ + +VAH+ +FD + E + +CT++LAR++ Sbjct: 63 SDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKII 122 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADIT 165 PG+ YS + +T+K+ P L HRA+ D TA L ++ T + + + Sbjct: 123 PGLSSYSLGRICETQKI-----PILARHRAMGDARATAILFDQMLKKDSQTVFQALKKNS 177 Query: 166 GRPSLMTTFTFGKYRGKA 183 G L F KYR Sbjct: 178 GEAFLPPNFPITKYRKIP 195 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 20/209 (9%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + D ET G I+EI +V + G IV+ S + P+ PI + IT+ MV Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYHIQKLTSITDEMVI 557 Query: 60 DKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 IE+++P + + VAHNASFD + + + + T+ LAR L Sbjct: 558 GSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLN 617 Query: 109 GIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 + + K ++++ +HHRA+ D TA + + + + R Sbjct: 618 HLNNFKLDTVAKALSISLE-----NHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQINR 672 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 +T K + + D G + Sbjct: 673 AEEVTPDVIKKMPTYHAIILCQNDIGRVN 701 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 22/208 (10%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET GL I+EI ++ + +++ S V+P++ +S ++ ITE M Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-----EMPGEW----ICTMKLARR 105 +++ I++V+P + VAHNASFD + G+W I T+ LA+ Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 L+ YS + K KL HHRA D +TA +L + + + ++ Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVLKKFVQLAKKRG--VQNVN 589 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193 L + +S +A+ G Sbjct: 590 ELEKLRKNQNLDSLKPFHISILAKNKKG 617 >UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter RepID=A3JBF5_9ALTE Length = 483 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 27/210 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G I EI G+ V LV P ISP + I+ AMV Sbjct: 13 FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMV 72 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 AD P ED+ +VAHNA FD + + +CT+KL+RRL+ Sbjct: 73 ADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLY 132 Query: 108 PGIKYSN-MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164 P + N AL + L + HRA+ D ++ G + + ++ Sbjct: 133 PEFRRHNMDALIERHGL-----QQVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICEL 187 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 RPS+ + + ++ Y Sbjct: 188 LQRPSIPSHLPLD-----TLQELPRGPGVY 212 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 24/217 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI + + GKI++ V P++PI + + + IT+ MV Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMV 483 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D I+ V P + VAHNA FD L ++ T+ LA+ L+ Sbjct: 484 RDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELF 543 Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163 P K Y + K + V+ HRAL D T + +D++ G + D Sbjct: 544 PDYKTYKLGRIAKNLGIKVEV-----AHRALDDVGTTVKVFNIMVDMLKERGVETLEDID 598 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + + K + +A+ G L+ L+ Sbjct: 599 LKAADEAARKDEYKKLKTYHAIILAKDYTG-LKNLYK 634 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 22/171 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ ++EI++V V G++ S LV P R I P A ++ IT+ MV Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGITDKMV 84 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE---------MPGEWICTMKLARR 105 A +V+ ++ G V HN SFD + L +++ T+ LAR Sbjct: 85 AGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLLLARA 144 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P + + + L + ++ + HRAL DC++ + + + Sbjct: 145 ALPELSHHRLVDLAEHYGISAKG-----AHRALNDCHMNQKVYGKLAEEAE 190 >UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes RepID=A6EU25_9BACT Length = 472 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 21/209 (10%) Query: 2 LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 +ID ET G QG + EI + V + +IV+ S L+ P+ I A+ IT+ MV Sbjct: 8 FTVIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVT 67 Query: 60 DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 D P DV I +VAHN +FD L + + +CT++L+R+L P Sbjct: 68 DAPRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIP 127 Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADITG 166 G+ YS L ++ +++ L HRA D T L + ++ S E + Sbjct: 128 GLPSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFLN 182 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + S T + + YL Sbjct: 183 KSSREATLPPHINTE-DFNRLPSTAGIYL 210 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 189 bits (482), Expect = 5e-47, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 26/215 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET GL ++E+ +V+++DG+I L P P+S + AI I+ AM Sbjct: 544 FVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAM 603 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106 + D P + +VI + VAHNA FDRR L E +CTM+L +R Sbjct: 604 LVDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRA 663 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 +PG+ +A L + + + HRAL D TA L + + + T Sbjct: 664 YPGLGSYKLAFLAEHAGVALPDAM----HRALADAMATAELFLVMREREACPPPE----T 715 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDP--GYLRWL 198 P++ + A R P G+ RWL Sbjct: 716 QPPAIAEPAADRAVLASTLPPTAPRQPASGWRRWL 750 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 22/197 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ I+EI++V V G + + S LV P R I QA ++ IT+ MV Sbjct: 15 YTVFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMV 74 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPEM---------PGEWICTMKLARR 105 ++ P I + + + G + V HN SFD + + ++I T+ +AR+ Sbjct: 75 SEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARK 134 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 P +K+ + L + ++ + HRAL DC + ++ + + Sbjct: 135 CLPELKHHRLTDLAEHFGISSKG-----AHRALNDCVMNQKCFEEMAKLQKKSVVFVCPK 189 Query: 165 TGRPSLMTTFTFGKYRG 181 G + +G++ G Sbjct: 190 CGGEMIRRNGRYGEFWG 206 >UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SPM0_9CAUL Length = 717 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 20/176 (11%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G + EI +V + +G+I++ L+ P+R I P + I+ AM Sbjct: 544 VYTVVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAM 603 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 V D P D+ + +VAHN +FD L +CT+ RR Sbjct: 604 VRDAPRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRH 663 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 +PG+ Y L + + ++ +HHRAL D A LL I Sbjct: 664 FPGLAAYGLGPLSREFGIELK-----NHHRALSDAMAAAELLKLINERRLSPIRDW 714 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 189 bits (480), Expect = 7e-47, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 22/215 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+E+A+V + DG++V + P+RP+S + IT MV Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMV 484 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 +V+ + G HN SFD L + I T++L+R L Sbjct: 485 HGAKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRML 544 Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 P K +L K K+N++ HHHRA D T LL + + + + Sbjct: 545 HPEYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLLYKLEKEAAENYDMVNVNQ 599 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + + + R +A+ G L+ LF Sbjct: 600 LNDRVGVGEFYKQARPAHAVLMAQTQAG-LKNLFK 633 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 188 bits (479), Expect = 9e-47, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 27/238 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI +V V G++ + +S LV P R I Q + IT AMV Sbjct: 31 FVVVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMV 90 Query: 59 ADKPWIEDVIPHYY-------GSEWYVAHNASFDRRVLPEMPG---------EWICTMKL 102 A P + + + + VAHNA FD L + T+ L Sbjct: 91 AGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150 Query: 103 ARRLW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 ARR W + +A + P HRAL D T +L + G Sbjct: 151 ARRAWTRSEVPNHRLATLASF----VGSPTRPTHRALDDARATVDVLHAALEVLGPLGVT 206 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 + + + + + D+ Y ++L + + L+ + Sbjct: 207 HLEDLATATDPVPAR-RRAKSRLAQDLPTSPGVY-QFLSAAGQVLYVGSAVDLRRRVR 262 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 38/251 (15%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V + G+ ++ S V P R I P I I++ V Sbjct: 34 FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDV 93 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 P + + VAHNA FD L +CT+ LAR + Sbjct: 94 NGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTM 153 Query: 107 WPGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMA 162 + +L + HRAL D T + ++ G + Sbjct: 154 LDRCAVGSFKLSSLARHFH-----ATTTPTHRALDDALATVTVFHGLLEELGSHDIIHVG 208 Query: 163 DITGRPSL--------------MTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 DI RPS T+ + R + + + PG + ++ + + Sbjct: 209 DIPTRPSRGAAGASVFQVPTPDATSISPSPNRYRRLIENVPSSPGVYIFRSHSGEPLYIG 268 Query: 209 LRLTLKHYLEN 219 + L+ L Sbjct: 269 TAVNLRRRLRQ 279 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 85/240 (35%), Gaps = 34/240 (14%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I EI +V V G+++ LV P I + I+ +M Sbjct: 30 FCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSM 89 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMP---------GEWICTMKLARR 105 VAD P +E +P + VAHNA FD L E + T +LARR Sbjct: 90 VADAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARR 149 Query: 106 LW--PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTA 158 + +L K +HRAL D T +L +M G T Sbjct: 150 VVSRDDAPNCKLSSLAKAFG-----STTTPNHRALSDARATVDVLHGLMERLGGVGVHTL 204 Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 E++ + R S R + +++ PG + + L+ + Sbjct: 205 EELQTFSSRVSSAQR------RKRHLAEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVR 258 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 20/178 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G+ I+E+ +V V+DG++ + V P PI + + I++A V Sbjct: 28 FVGLDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADV 87 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARR 105 A P I++V+P + G VAH+A FD L E G T+ L R Sbjct: 88 AGAPTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTRA 147 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 L P + +A P HRA D + L + ++ + D Sbjct: 148 LLPRLPNHRLATAARF----FDIPTGRSHRATDDARAVSDLFLALLGVLDQIGATVLD 201 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 22/174 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + + D ET GL I EI +V + + +IV S V P PI + IT+ MV Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMV 650 Query: 59 ADKPWIEDV----IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 AD P EDV + G+ AHNA FD + + T+ +A+ Sbjct: 651 ADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAA 709 Query: 107 WPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 GIK + K KL HHRA+ D + + + I+N + TA+ Sbjct: 710 LKGIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758 >UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5V5_GEOLS Length = 168 Score = 187 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 16/166 (9%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++DTET GL G ++EI +V V +G+I ++ L+ PIS A +H I+E M Sbjct: 4 VIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQM 63 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 +A +P ++V P + G+ VAHNA+FDR + + W CT++L+RR Sbjct: 64 LAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRK 123 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 P + + + P + HRAL D + A + ++++ Sbjct: 124 LPRLMNHKLETVYKHLFG-ELPEEVQRHRALDDARMAARVWVELLK 168 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 23/234 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ++D ET G I EI +V V G+++ V P+RPI ++ IT+A V Sbjct: 21 LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A+ P I V+P + G VAHNA FD L + T+ LAR + Sbjct: 81 AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140 Query: 107 W--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + ++ ++ HRAL D T +L I+ G + + Sbjct: 141 FRRDEVRDHRLSTLARH----VGAGITPDHRALSDARATVDVLHAIIERLGPSGASTLED 196 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 G + + R K +++ PG ++L + ++ + Sbjct: 197 LGTA--HRRASPVQLRKKHLAEDVPPVPGVYQFLDAQGAVLYVGTSRNVRSRVR 248 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 89/217 (41%), Gaps = 34/217 (15%) Query: 3 RIIDTETCGLQG--GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ++D ET GL I EI +V + DG +V+ S LV+P RPI P ++ IT AMVAD Sbjct: 30 VVVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 89 Query: 61 KPWIEDVIPHYY--------GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLA 103 I V+ H+ S VAHNASFD L P + T+ LA Sbjct: 90 AAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALA 149 Query: 104 RRLWPGI--KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT- 157 R P + + + + HRAL D TA + ID++ +G T Sbjct: 150 RLALPRPLVRNHKLGTVASY----FGTATVPEHRALGDARATAEILLGFIDLLAAAGATD 205 Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 E + +T + T V+D+ Y Sbjct: 206 VEDLIVLTDQAPARRPSTPD-----FVTDLPTSPGVY 237 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 33/234 (14%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G +++I +V V I + S V P I P + IT+ Sbjct: 5 FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDRFSTFVDPGCSIPPFITELTGITDKD 64 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-EMPGEWI--------CTMKLARR 105 V P ++ + VAHN FD+ L ++ E + T++L+R Sbjct: 65 VEGAPVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVELSRV 124 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L P + ++ +L+ HRA D ITA L I +++ Sbjct: 125 LLPTQESYKLS-----ELSSSLDMDHDRPHRADSDAEITAELFIKLLHKLERLPLVTLQS 179 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPEL--RLTLKHY 216 + + + DV R +W+ + D +L +L LK Sbjct: 180 LEQVAKGLKSDW---------DVLTRPLIQKKWMKVDEDEREYDLFRQLALKRV 224 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V + +GK+++ S V P I + + + I + MV Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMV 463 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 D I+ V+P + VAHNA FD + + + +I T++ ++ L Sbjct: 464 KDSDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILV 523 Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMADIT 165 +K + L K + ++ +HHRA+ D TA L +++ E++ D++ Sbjct: 524 DDVKRFNLDTLTKRFNIKLE-----NHHRAVDDANATAELFKKLLSLVSANGVEKLTDVS 578 Query: 166 GRPSLMTTF 174 + Sbjct: 579 EKLEKKPKI 587 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 186 bits (474), Expect = 4e-46, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 23/218 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I EI +V ++DG I S L+ P I + + RIT A+V Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 ++P IE+V P + VAHNA FD + + T+ AR Sbjct: 461 ENEPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATV 520 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 K N+A L K +++ + HRA+ D TA L I ++N + D Sbjct: 521 KDTKKFNLATLCKKFGVSL-----VGAHRAVNDAEATAHLFIKLINKIFD--PKHIDFNK 573 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDS 204 SL + ++S + + + G L+ L+ + Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEG-LKNLYKLVSD 610 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 65/161 (40%), Gaps = 20/161 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EI +V V + ++V L+ P RPI + + + IT MV Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMV 622 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P ++ + G +VAHN +FD L +CT RR + Sbjct: 623 RDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRY 682 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 PG Y L + + HHRAL D A LL Sbjct: 683 PGHTSYGLGKLCAIYGIELD-----DHHRALCDARAAAHLL 718 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 19/170 (11%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G + I EI V+V G + S LV P +PI P + I++AMV Sbjct: 6 YVIVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 A+ P ++ P + +AHNA FD L + +CT+KL+RRL+ Sbjct: 65 AEAPPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLY 124 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P K+S +L ++V P HRAL D L + G Sbjct: 125 PQHAKHSLDSLIARHGIDV---PPGMRHRALGDAEAVYVFLQTAVAELGQ 171 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET G++ I++I +V +++G+++ LV P+R I P+ + IH I++ Sbjct: 545 YTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISD 604 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV +P IE V+P + VAHNA+FD R L + T+ L+ Sbjct: 605 DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSG 664 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 L P + ++ + + ++ H AL D TA + + ++ Sbjct: 665 VLHPNQESHQLDSIAERLGIGIE-----DRHNALGDACATAEVFLKMLPLLAQMGITTLR 719 Query: 164 ITGRPSLMTTFTFGKY 179 S T F KY Sbjct: 720 QALEASEKTYFARVKY 735 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 23/195 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL GI E +V + +G++++ + V P + IS + + IT MV Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 462 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 ++P I+ ++P ++ VAHNA+FD L PE+ I ++ LAR + Sbjct: 463 RNEPTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALARAI 522 Query: 107 W-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----SGWTAEQM 161 P Y + ++ ++N HRA YD + + +++ + + Sbjct: 523 LKPMKSYRLGNVCRSYRVNYDDEV---AHRADYDAEVLGDVFNMMLHQIMQSGKYNLLDL 579 Query: 162 ADITGRPSLMTTFTF 176 ++TG + + Sbjct: 580 CELTGDDVYKIVYPY 594 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 19/170 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A V + +GK V+ S + P I + I + MV Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 D P +E + + G VAHNA FD + P++ + T++LAR L Sbjct: 481 KDAPELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFL 540 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 P +K + + +HHRA+ D +L ++N + Sbjct: 541 HPTMKNHRLNTLSAKY----KVSLDNHHRAVDDSVALGGVLFGLINDAAE 586 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 28/236 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +D E GL I+E A+ +++ M L+ PDR IS ++ IHRI++AM Sbjct: 8 IFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAM 67 Query: 58 VADKPWIEDVIPH---YY-GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLA 103 + D+P I +V P + ++ V H+ FD +VL + I T++LA Sbjct: 68 LKDQPRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLA 127 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + S AL + HRA+ D I + T EQ+ Sbjct: 128 KEYGDSPNNSLEALAVHFNVPYDGN-----HRAMKDVEININIFKHFCKRF-RTIEQLKQ 181 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + +P M GK++G+ S++ YL+W + +L +++H +++ Sbjct: 182 VLSKPIKMKYMPLGKHKGRCFSEIP---LSYLQW--ASKMDFDADLLFSIRHEIKH 232 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 30/231 (12%) Query: 6 DTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 DTET G++ ++E+A D + + L+ P PI P+A AIH IT+ MVA+ P Sbjct: 7 DTETTGIKADRDYVIELAVYDPVGNR---TFERLINPGVPIPPEATAIHHITDEMVANAP 63 Query: 63 WIEDVIPHY----YGSEWYVAHNAS-FDRRVLPE---------MPGEWICTMKLARRLWP 108 ++I + G +AHN FD L P +++ T+K ARR Sbjct: 64 SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168 + + + + + HRAL D + + +++ + + + +P Sbjct: 124 DLPRHTLQFLR----GIYGIAENNAHRALDDVIVLHQVFSAMLDDL--SIAEAYALMNQP 177 Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + FGK++G + V Y++WL PE L L+ E Sbjct: 178 KDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFEK 224 >UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales RepID=C7PV18_CHIPD Length = 456 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 27/211 (12%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G I EIA IV L+ P PI ++ IT+ M Sbjct: 1 MYAIVDIETTGGHASANGITEIAIYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 VA+ P ++V + +VAHN +FD + ++ + +CT++L R++ Sbjct: 61 VANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRKI 120 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163 PG+ YS L K+ +++V HRA D T L ++ +T A ++ Sbjct: 121 IPGLPSYSLGNLCKSLEISV-----TQRHRAAGDAAATVKLFGLLLQQDTGKAIAHALST 175 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 + L + V+ + Y Sbjct: 176 HSKEQFLPPNLPPEQ-----VTALPGTPGVY 201 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 22/190 (11%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G + + EIA ++V DG +V L+ P RPI P + IT+A VA Sbjct: 12 VILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVA 71 Query: 60 DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 D P +++ + VAHNA FD L + + + +C++KL+R+L+P Sbjct: 72 DAPTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131 Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA--DIT 165 + + + L + + HRA+ D + A I T + A Sbjct: 132 EHRSHGLDRIIERLGLTID-----NRHRAMADTEVLLAFFEHISAQFPATTIRSACKQQL 186 Query: 166 GRPSLMTTFT 175 RPS+ + + Sbjct: 187 KRPSIPSHVS 196 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 25/233 (10%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EI +V DGK+++ VRP++ ++ +++ I ITE M+ Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDML 441 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P I V+P + VAHNA FD L E +I T++L++ L Sbjct: 442 KDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL 501 Query: 108 PG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 +S L L HHRAL D +T + ++ + + + Sbjct: 502 RNKIKSFSLDKLVDHFGLGA-----FQHHRALDDARVTVNVFWKLIELAKK--KSITTFE 554 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 L+ + V+ + G L+ L+ + E + L+ Sbjct: 555 KLNKLVENINPLVKHPQHVTVLVRNKTG-LKNLYKLISKAHTETFFVVPQVLK 606 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 184 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 24/185 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I++ A+V + GKI++ S L+ P + I + + ++M Sbjct: 5 YVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSM 64 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 V+D P ++ P ++VAHN FD L E G I T++LAR Sbjct: 65 VSDAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELART 124 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161 + P ++ + + H+A D Y TA LL + T +Q+ Sbjct: 125 VLPCSDSYKLSDLSAK----EGIMHDRPHQADSDAYATAKLLHIFLERLEELPLTTIKQL 180 Query: 162 ADITG 166 ++G Sbjct: 181 LKLSG 185 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 21/172 (12%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV+IA + +++G+I+ LV P RPI P + +H I++ Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553 Query: 56 AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104 MV D P I + + VAHNA FD L +CT+ ++ Sbjct: 554 DMVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSA 613 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 L+ AL + + + P H A+ D TA + + ++ Sbjct: 614 GLFDHSGQHTLDALCERFGITI---PPEARHTAMGDTVATAEVFVRMLGLLQ 662 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 29/218 (13%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I+EI ++ +G+ V + LV P++ IS IT +MV Sbjct: 24 FAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMV 83 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P I+ ++ ++ +VAHN FD + ++ W+CT +LARRL Sbjct: 84 DNAPVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRL 143 Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQ 160 P K + L K + V+ + HRA DC T LL +++ TAE+ Sbjct: 144 LPTQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELIILAQEQHGVETAEE 198 Query: 161 MADITGRPS---LMTTFTFGKYRGKAVSDVAERDPGYL 195 + + + F K R ++ + YL Sbjct: 199 LLSLQFKAIRNFKREPRHFSKIRNTVLNKFPTKSGVYL 236 >UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IIU0_PSEHT Length = 730 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 20/167 (11%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I EI V V GK+++ + LV P R I ++ I+++M Sbjct: 566 IYSVVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSM 625 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V++ P D++ +VAHN +FD + + +CT+ +R+ Sbjct: 626 VSNAPVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCTVVESRKA 685 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 + G+K YS L K LN+ + HHRAL D TA LL+ I Sbjct: 686 FAGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQK 727 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 36/236 (15%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EI +V + +G+I V P RP+S + + + IT+ M+ Sbjct: 369 VVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKML 428 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107 P E+ I + G AHNA FD + E + I T+ LA+ L Sbjct: 429 EGAPSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLL 488 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMAD 163 P + KY + + +L P HHRA D + A + ++ G Sbjct: 489 PDLGKYKLDIVAEHLRL-----PPFKHHRADADAGMVAYMLVPFFKMLEDLG-------- 535 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 I S+ T + +GK A R P +L L N + L K +LE+ Sbjct: 536 IHTLQSINPEMTRLRVKGK-----ARRQPKHLIVLAKNNMGLRNLYTLISKAHLEH 586 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDR-PISPQAMAIHRITEAM 57 I+D ET GL I+EIA++ V G +V+ LV+P I + IT A+ Sbjct: 11 FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNAL 70 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V DKP IE+V P + + VAHNA FD L + +CT LA+R Sbjct: 71 VVDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKR 130 Query: 106 LWPGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L+P + S + L + P HRAL D +T L I++ Sbjct: 131 LFPDLPSKSLVNLAYHFNI-----PYNKKHRALEDALVTYELFKKIID 173 >UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L3L4_MAGSM Length = 237 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++DTET G I+EI V++++ + + V P+R I A +H IT+A Sbjct: 4 LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMP-----------GEWICTMKLA 103 VA+ P +++ + G + V HNA FD R L I T+ LA Sbjct: 64 VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 RR +PG + AL K ++ H AL D ++ A + +++M + ++ E AD Sbjct: 124 RRKFPGSTVNLDALCKRLGVDNSGRT---FHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180 Query: 164 ITGRPSLMTTFT 175 +GR + + Sbjct: 181 ESGRIAQPSDSP 192 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 19/170 (11%) Query: 2 LRIIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL G+ EI +V V +G++V V+P +PI+P+ + IT MV Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMV 456 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE--------MPGEWICTMKLARRL 106 AD P ++ + + VAHNA +FD R L +I T+ +A+ + Sbjct: 457 ADAPGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAM 516 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +PG+ P HRA D + +++ Sbjct: 517 YPGLHNYKQGTINKH----LELPSYEAHRACEDSAALGRIFCVMLSDLAE 562 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 182 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 23/208 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +ID ET G + EIA + + G+IV LV P+RPI + IT+ MV Sbjct: 7 LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A P ++ +VAHNA FD + + +CT+KL+R L+ Sbjct: 67 AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ AL + HRA+ D + +++ ++A+ +A Sbjct: 127 PEHHRHGLDALIERHGF-----TCGARHRAMGDTDVLWQ-FARLVS-GSFSADVLALACA 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194 R + G G A+ V + Y Sbjct: 180 RAMKLPARPPGLPEG-ALEGVPDAPGVY 206 >UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A497_GEMAT Length = 214 Score = 182 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 23/183 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G + I EIA V V G++ S LV P+RPI P ++ IT M Sbjct: 6 FAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDM 65 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V D+P ++ + +VAHNA FD R + E+ G +CT++ AR Sbjct: 66 VRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARA 125 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMAD 163 P + + S + + + + HRA D TA L ++N S E Sbjct: 126 ALPQLSRRSLDHVTRYFGIEIAA-----RHRAAGDALATAHALCRMLNIASEHGVESWTA 180 Query: 164 ITG 166 + Sbjct: 181 LQA 183 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 26/187 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G I++IA+V + +G+I S + P++ I + I+ M Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNKSIPAFIEQLTGISNQM 65 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 V ++ E V ++VAHN FD + E + T++L+R Sbjct: 66 VENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRI 125 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++PG + Y L + +L HRA D +T + ++I+ T +Q Sbjct: 126 VFPGFEGYKLTELSEELQLRHD-----QPHRADSDAEVTGLIFLEILEKLRQLPYPTLKQ 180 Query: 161 MADITGR 167 + ++ Sbjct: 181 LRRLSQH 187 >UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=A8H432_SHEPA Length = 215 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL +EI +V + DGK+V+ L+ P IS + I+ AM Sbjct: 18 VIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAM 77 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106 +AD P E+V + G VAHNASFD+R L + C+M +ARRL Sbjct: 78 LADAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRL 137 Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 + + +L + + HRAL D +TA+L + ++ + Sbjct: 138 YQAAPNHKLGSLVSYKNIQHDGVF----HRALADSEMTASLWLAMLEDLQQDYQ 187 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET G I+++A+V + ++V+ V P+RPI + ++ IT V Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV 69 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 +D P IE+V+P + + VAHNASFD R LPE + I T+ LA++ Sbjct: 70 SDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKY 129 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 + K L H A DC AA+ ++ Sbjct: 130 MKHATNHKLETLKRM-----LGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKV----N 180 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 + L T + +AV ++ + + WL Sbjct: 181 KAMLDETAVY-----EAVKEILACNKRNVEWL 207 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 26/236 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL I+EIA++ V+DGKI S L+ P R I A AI+ IT MV Sbjct: 78 YVVVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMV 137 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHN-ASFDRRVLPEMPGE--------WICTMKLARRL 106 + P ++ VIP + + HN +D VL E W T KLAR++ Sbjct: 138 KNAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQI 197 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 Y + + K + HRAL DCY+T + + S T E + I Sbjct: 198 L-EPPYKLINIAKRLNV----KQHGKAHRALADCYMTYGIYEKMREISIATTENVKCIEK 252 Query: 167 RPSLMTTFTFGKYRGK--AVSDVAERDP--GYLRWLFNNLDSMSPELRLTLKHYLE 218 T T K G ++ V P +L+ L N ++S + L + ++ Sbjct: 253 YTDKNTEST--KLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLID 306 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 78/213 (36%), Gaps = 26/213 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I E +V V G++V + LVR I P + IT+AM+ Sbjct: 52 FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAML 111 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 A P + +V+P + VAHNA FD L + T +LARR+ Sbjct: 112 ATAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRI 171 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMA 162 + N L +L HRAL D T +L + G T E + Sbjct: 172 VTRDESPNNKLSSLARLFRARTEPC--HRALADARATVDVLHGLFERLGNLGVTTLEDVH 229 Query: 163 DITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 + R S + + D+ Y+ Sbjct: 230 AYSARVS-----PAQRRKRVLADDLPTGPGVYI 257 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 81/205 (39%), Gaps = 19/205 (9%) Query: 2 LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 IID ET G I EI+ IV+ + LV P+ I A+ I AMVAD Sbjct: 7 YTIIDVETTGRSNKITEISIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADA 66 Query: 62 PWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110 P ++ +VAHN +FD V+ + + +CT++L+R L PG Sbjct: 67 PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGF 126 Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169 K YS L K+ +++ HRA D T L ++ T AE R S Sbjct: 127 KSYSLGKLCKSLNIHIS-----DRHRARGDAAATVILFQLLL-TKDAAAETFQKFLKRES 180 Query: 170 LMTTFTFGKYRGKAVSDVAERDPGY 194 T K D+ + Y Sbjct: 181 KEATLPPH-LPSKIFDDLPAKPGIY 204 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 24/209 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + +D ET G I EI V+V IV L+ P I P + I++ MV Sbjct: 33 IVFVDLETTGADAQRDRITEIGVVEVGPDGIVE-WETLLDPGMSIPPFIQRMTGISDDMV 91 Query: 59 ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P E + + +VAHNA FD L + +CT++L+R L+ Sbjct: 92 RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSLF 151 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ AL L HRAL D + I T ++ + Sbjct: 152 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHATYSV---ELVEAAV 203 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 R + A+ DV Y+ Sbjct: 204 RTLVRRASLPAGLEETALEDVPASPGVYI 232 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 25/215 (11%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL+ I+EI +V + + KIV+ LV+P +P+S IT M+ Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQML 441 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + IE+V+P + VAHNA FD R + +I T+ L++ L Sbjct: 442 EVEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSL 501 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADIT 165 Y + + KL HHRA D ITA + + ++ E ++D+ Sbjct: 502 LTLKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDLE 556 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 L F + + + + + G L+ L+ Sbjct: 557 K---LKKFIDFKRIQPNDTTILVKNKTG-LKNLYK 587 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 25/223 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G GI EI +V V G+++ LV P P+ + IT MV Sbjct: 62 FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGEFQSLVNPGHPVPAFIARLTGITTLMV 121 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + P IE V+P + VAHNA FD L + + T+ LARR+ Sbjct: 122 SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPLARRV 181 Query: 107 W--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMAD 163 + HRAL D T ++ + + + + D Sbjct: 182 VTRDEAPNHKLGTLAAL----FRATITPDHRALSDARATVDVMHALFDRMAPLGITHLED 237 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206 + + R + ++D PG ++ + + Sbjct: 238 L---ATATDPVPADVRRRRHLADGMPSGPGVYMFVGPQDEVLY 277 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 80/229 (34%), Gaps = 31/229 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + +D ET G I EI V+V I LV P I P + IT+ MV Sbjct: 35 IVFVDLETTGADAQRDRITEIGVVEVGPDGIQE-WDTLVDPLTSIPPFVQGLTGITDEMV 93 Query: 59 ADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P + + +VAHNA FD L + +CT++L+R L+ Sbjct: 94 RGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSLF 153 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164 P ++ AL L HRAL D + I + + + Sbjct: 154 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHEIYSVDLVESAVTSL 208 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL 213 SL A+ DV +R YL + D + + ++ Sbjct: 209 VKHASLPAGL-----EEAALDDVPDRPGVYLFY---GDDDVPLYVGKSI 249 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 23/209 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G I EIA+V + +G+ V S LV P ISP + I+ AMV Sbjct: 5 YVLLDLETTGGNPVHDRITEIAAVRIENGQEVARWSTLVNPGCSISPFIQHLTGISNAMV 64 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 P E V + VAHN FD L + + +CT++L+R L+ Sbjct: 65 RGAPGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVALRVKTLCTVRLSRLLY 124 Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P K A+ + + L HRA+ D + A L G + Sbjct: 125 PQHKGHGLDAIMQRHGI-----RTLERHRAMGDVEVMQAWLQIARQEHGAELLGQQALAL 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 S T + R V+D+ E Y+ Sbjct: 180 LQSSATLPPQLETR---VADIPESVGVYI 205 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 180 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 25/214 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++ V V DGKI+ + V P++ + Q ++ I+ Sbjct: 12 VYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQ 71 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V P+ EDV I HY +VAHN FD L P + I T++LA+ Sbjct: 72 VQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 P K + L ++ L+ + + H+A D +TA LL+ I T E+ Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE-----NPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 +A+++ + + T+ + + V +P Y Sbjct: 187 IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 180 bits (457), Expect = 3e-44, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 35/237 (14%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL + I+EIA+ + +I++ + LV P+ I P I+ I MV Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMV 190 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 D P I++V+P ++ G VAHNA FD + L + I T+ ++R+L+ Sbjct: 191 KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLF 250 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 I+ + K LN+ HRAL DCY+ + ++ +T + +A+I Sbjct: 251 SEIENHKLGTIKEY-LNIDV---QDSHRALPDCYVCGQIYLEY-STKEKNKKALANI--- 302 Query: 168 PSLMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFNN----LDSMSPELRLTLK 214 G + + S V E +D Y+R+ F + + + LRL LK Sbjct: 303 ---KLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 20/195 (10%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58 + DTET GL IV+IA + + G++ LV P RPI P + A+H IT+AMV Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A P + + + VAHNA FD L + + T+ L+ LW Sbjct: 514 AGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW 573 Query: 108 -PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMADIT 165 +S AL + + + P H A+ D TA + ++ ++ D+ Sbjct: 574 GQSAPHSLDALTERLGIVI---PPEARHTAMGDARATAEAYLRLIAALEAKGLDRFEDVL 630 Query: 166 GRPSLMTTFTFGKYR 180 + Sbjct: 631 AEARRHRRLVDDANK 645 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 38/219 (17%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+EIA + + +G + + P + ++ I IT+ M+ Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEML 540 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + I+ V+P + VAHNASFD L E P I TM L++R Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRY 600 Query: 107 WPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + +KY S L K+ ++ HHRAL D T+ + I +++ Q+AD Sbjct: 601 FSNLLKYFSLKRLATVFKVKLE-----DHHRALADATATSEIFIKMID-------QLADP 648 Query: 165 TGRPSLMTTFTFGKYRGK---------AVSDVAERDPGY 194 T P F + + K ++ + GY Sbjct: 649 TKDPKNEQVINFFELQEKIDHKYERPYHINILVANQTGY 687 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 179 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 30/231 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I++ ++V V +I + V P++P+ P + I M Sbjct: 4 YVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVPPFISELTGIDNGM 63 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + + P ++ P +VAHN FD L P G + T++ +R Sbjct: 64 LEEAPVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTVEFSRI 123 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 +P + Y L + L + P HRA D ++TA LL+ M T EQ Sbjct: 124 AFPTLNSYKLGDLADSLSLYHERP-----HRADSDAFVTAKLLLACMEKCASLPVVTLEQ 178 Query: 161 MADITGRPSLMTTFTFG---KYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 + ++ F + + + + + Y R + + P+ Sbjct: 179 LVPLSYSLKNDLAGIFEDILEEKRRHIEHLPPDMEVY-RGIALKRKILPPD 228 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 179 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 22/215 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E+A+V + G ++ + P P+S + + IT+ MV Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMV 486 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 E+V+ + VAHNA+FD L PE I T++LAR L Sbjct: 487 RGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYL 546 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 +P K + L K ++++ HHRA+YD T L + + + Sbjct: 547 YPQFKRFGLGVLSKKFGVSLE-----QHHRAIYDAEATGHLAWIFVKEAMDNHNMLYHDQ 601 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + ++ + R V+ +A+ G L+ LF Sbjct: 602 LNEHIGEGDSYKRARPFHVTILAKNQAG-LKDLFK 635 >UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTR2_9SPHI Length = 469 Score = 179 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 25/218 (11%) Query: 1 MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + I+D ET G GI EIA ++++ L+ P + I + IT M Sbjct: 12 IYAIVDIETTGGYAANSGITEIAIYLHDGHQVIDSYQTLINPHKEIPYHIQMLTGITPEM 71 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 + D P EDV + ++ +VAHN +FD + + +CT++LAR + Sbjct: 72 LTDAPSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCTVRLARNI 131 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-----AEQ 160 + G YS L + + P HRA D T L I++ + Sbjct: 132 FKGFSSYSLGNLCQRLDI-----PISDRHRAAGDAKATVILFERILSQDTDGLIDSFLQT 186 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198 A P+ + F + K + + + G + ++ Sbjct: 187 HAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224 >UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani RepID=Q895Z5_CLOTE Length = 380 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 18/192 (9%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET GL I+EI ++ G+IV + L+ P I +A I+ IT MV Sbjct: 84 FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMV 143 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 D P IEDV+P + VAHNASFD + L E+ I T++L+R ++ Sbjct: 144 KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMY 203 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 + + K + HRAL DC TA + +D + ++ ++ Sbjct: 204 TFLPNHKLTTIKEH----LCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNELEKA 259 Query: 168 PSLMTTFTFGKY 179 + K Sbjct: 260 CFKVIKDMLNKN 271 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 179 bits (455), Expect = 6e-44, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 35/218 (16%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57 I+D ET G + I EI +V G+++ LV+P+ ISP + IT AM Sbjct: 31 FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAM 90 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARR 105 V D P I V+P + VAHNA FD + + + T+ L+RR Sbjct: 91 VDDAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRR 150 Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 + ++ ++ + P HRAL D T +L ++ G T E Sbjct: 151 VVSRDEVRNHKLSTLAAH-FGTEVSPD---HRALSDAKATGEVLHRVLERFGGYGITTLE 206 Query: 160 QMADITGRPSLMTTFTFGKYRGKA--VSDVAERDPGYL 195 ++A + + K + K+ V Y+ Sbjct: 207 ELATV-------RQAGWAKRQAKSHLAKGVPAEPGVYM 237 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 179 bits (455), Expect = 6e-44, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 22/214 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+EI +V + +G++++ + P P+S + + IT+ MV Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMV 451 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 VI + G++ HN FD + PE+ + T++++R L Sbjct: 452 QAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLL 511 Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 P +L + + ++ HHHRA D T L+ +++ + D+ Sbjct: 512 HPEQSRHTLDSLCRKYNVALE-----HHHRANQDAEATGYLMFKLLDAFNDKYHE-DDLG 565 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199 + + R ++ +A+ LR L+ Sbjct: 566 KMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLY 599 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 21/208 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+E V + +G++V M ++ P+ P + IT+A + Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADL 444 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + P IE+ I + G VAHNA FD + E + I T+ L+R L Sbjct: 445 VNAPSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRAL 504 Query: 107 WPGIKYSNMALYKTR-KLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 + + + ++ HRA YD + + + ++++ M I Sbjct: 505 FDNRRSYRLGSIARFMRIGYDEGV---AHRADYDAEVLSLVFLEMLRL--EQLSTMQTID 559 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193 SL +F K R + +A+ Sbjct: 560 DLQSLNNESSFKKLRKSHCTVIAKTQSS 587 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 17/173 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL I+EI V ++DGK ++ S L+RP + + + I + + Sbjct: 4 FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHEL 63 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-----PEMPGEWICTMKLARRLWPGI 110 D P +++V+P + V HN FD L + T++L++ L PG Sbjct: 64 QDAPKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGA 123 Query: 111 KYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA 162 + L +++ + HRAL D A LLI ++N ++ Sbjct: 124 SNHRLGYLCSYLGIDI-----PNQHRALDDARGAAMLLIHLLNQCEEMEPELI 171 >UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C5FA2 Length = 285 Score = 179 bits (454), Expect = 8e-44, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I+EI +V + +G+IV+ S LV P+ I + + +IT M Sbjct: 17 FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDM 76 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVLPEM--------PGEWICTMKLARR 105 V D P+I +V+ + VAHNASFD R L + + T+ L++ Sbjct: 77 VKDAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVSLSKF 136 Query: 106 LWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +P K + L ++ P +HRA+ D TA + + AE++ D Sbjct: 137 TFPDKKKHTLIDLCSYLEV-----PLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 178 bits (453), Expect = 9e-44, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 30/235 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L DTET G Q IVE+A+ +G LV P+ PI +A IH IT A V Sbjct: 4 LIFYDTETTGTQIDKDRIVELAA---YNGTTSESFQTLVNPEIPIPAEATKIHGITTAEV 60 Query: 59 ADKPWIEDVIPHYYG----SEWYVAHNAS-FDRRV---------LPEMPGEWICTMKLAR 104 AD P + + VAHN + FD + L E I ++K A+ Sbjct: 61 ADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWAK 120 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMAD 163 + + ++ + V HRAL D + ++ + + Sbjct: 121 KYRTDLPQHSLQYLR----QVYGFEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLLN 176 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 T P + FGKY+GK +S+V Y+ WL + PE +K +E Sbjct: 177 ETCHPRIF-KMPFGKYKGKPLSEVP---SSYIAWLQKGDYLLQPE-NKEIKAAIE 226 >UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN Length = 234 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 23/237 (9%) Query: 1 MLRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ML +D ET GL+ I I + V + I + LV + IS +A +I+ IT M+ Sbjct: 1 MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59 Query: 59 ADKPWIE-----DVIPHYY-GSEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108 DKP + +++ S +AHN +FD ++L + G+ + T+++ + L P Sbjct: 60 KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119 Query: 109 G-IKYSNMALYKTRKL-------NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 ++S L KL + + H AL D L ++ ++ Sbjct: 120 ECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIKEH--DE 177 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 + ++ + L+ F FGKY+G+ + +++ D GYL W+ ++ + +LR +++ L Sbjct: 178 LVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIRGVL 234 >UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ART4_RUBXD Length = 560 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 16/146 (10%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I E+ ++ ++ G++V+ S LV P RPI P + IT+ MV Sbjct: 33 YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPG 109 + P +VIP + VAHNA FD L +P + T++LAR L PG Sbjct: 93 SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHR 135 ++ ++ ++ +HR Sbjct: 153 LRRYRLSAL----VSHFGVRQAPNHR 174 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 26/187 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G+ I++IA V + KI++ + V P R I P ++ I + Sbjct: 4 FVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDRFNSYVNPMRDIPPFIRSLTNINDNE 63 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 V D P + V P ++VAHN FD + E + G I T++L++ Sbjct: 64 VKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGYTGLSGPVIDTVELSKI 123 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQ 160 +P ++ L ++ +N HRA D TA + ++IM+ T + Sbjct: 124 AYPTADGFRLSQLSESLHMNHD-----QPHRADSDAEATALIFLEIMDKLYHLPKQTLIE 178 Query: 161 MADITGR 167 + +++ + Sbjct: 179 LNNLSTK 185 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 28/213 (13%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL+ I EIA++ V+DG + LV P RP+ + + + IT+ M+ Sbjct: 16 YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGML 75 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 A P I DV + + G + HN FD L E I T+ L R Sbjct: 76 AGAPAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFM 135 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 PG N++ + HRA D L ++ G E++ T + Sbjct: 136 PGEHKKNLSAACAFY----CIEQVEAHRAEADALSAHLLYQKLLEGRGEGREEL--FTPK 189 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + Y+ K V +R YL+ L Sbjct: 190 SLI--------YKAKKEQPVTKRQKEYLQDLIK 214 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 21/238 (8%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + I+DTET G + I++++ + + + +I LV+P PIS +AMA+H IT MV Sbjct: 3 IVILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMV 62 Query: 59 ADKPWIEDV-----IPHYYG-SEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWP 108 DKP I+ + V HNA FD +L + + I T ++ + L P Sbjct: 63 EDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIP 122 Query: 109 GIKYSNMALYKTRK-------LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 K+S + + ++ H AL D + L ++ E++ Sbjct: 123 EGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLVTNFEKNVEEL 182 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 ++T +P L F GKY+ + + DV +DP Y+ ++ +L + P+++ +++H+LEN Sbjct: 183 VELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I +V V++GK + L+ P RP+ ++ +H IT Sbjct: 544 YTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITA 603 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 M+A +P IE V+P + VAHNA+FD R L + T+ L+ Sbjct: 604 DMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSA 663 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + P + A+ + + V + H AL D +TA + + ++ + Sbjct: 664 VIHPNQDSHRLEAIAERLGITV-----VGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLR 718 Query: 164 ITGRPSLMTTFTFGKY 179 + + + KY Sbjct: 719 EAREAAEKSYYARIKY 734 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 177 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 22/197 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G+ I+EI+++ V + + V S LV P RPI A ++ IT+ MV Sbjct: 58 YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMV 117 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPEMP---------GEWICTMKLARR 105 +P +E ++P + E + HN SFD L ++I T+ +AR Sbjct: 118 QSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARA 177 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L PG+ + L K++ + HRA DC + + + Sbjct: 178 LLPGLSRHRLTDLADYFKISSEG-----AHRAFNDCVMNQICYEHMGKLLKDADIPVCPR 232 Query: 165 TGRPSLMTTFTFGKYRG 181 G FG + G Sbjct: 233 CGGELTKRNGKFGPFYG 249 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I+++ + +++GK++ LV P+RP++P++ IH IT Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 M+ +P I+ V+P + +AHNA+FD R L I T+ L+ Sbjct: 639 EMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSA 698 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + P + + A+ + L + + H AL D +TA + + ++ + Sbjct: 699 VVHPNQESHRLEAIAERLGLTI-----VGRHTALGDAIVTAEVFLKLIPLLAEKGIRTLR 753 Query: 164 ITGRPSLMTTFTFGKY 179 + T + KY Sbjct: 754 DAREAAEKTYYARVKY 769 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I EI+++ KIV+ + LV P++ I ++ IT AM Sbjct: 2 LYAVVDIETTGNGPKGQKITEISALIFDGKKIVDEFTSLVNPEQNIPAFITSLTGITNAM 61 Query: 58 VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V + P ++ + +VAHN +FD ++ + +CT++L R++ Sbjct: 62 VRNAPRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIRLTRKI 121 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 PG+ YS + + P HRA D TA LL ++ Sbjct: 122 IPGLPSYSLGNICTGENI-----PINGRHRAKGDAEATAELLRRLIER 164 >UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales RepID=C5EVY5_9FIRM Length = 240 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 80/213 (37%), Gaps = 28/213 (13%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL+ I EIA++ V+DG I V P R + + IT+ M+ Sbjct: 5 YIALDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGML 64 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 AD P IE++I + G + HN FD L E I T+ L R Sbjct: 65 ADAPPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFM 124 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 G N++ + P HRA D L ++M+ G M D + Sbjct: 125 TGETRKNLSCACSY----FHVPQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD--PK 178 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 P + Y+ K +R YL+ L Sbjct: 179 PLI--------YKAKRDQAATKRQKEYLQDLLK 203 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 21/164 (12%) Query: 2 LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + I EI V++ V+ + LV P +PI P + I++AMV Sbjct: 38 LVFVDLETTGGTPAEHRITEIGVVEIGPLG-VSTWTTLVNPGQPIPPFIQQLTGISDAMV 96 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 D P ++ P + +VAHNASFDR L + +CT++L+R L+ Sbjct: 97 RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALF 156 Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 P AL L HRAL D + + Sbjct: 157 PRESRHGLDALIARHGL-----VPAARHRALADADLLWQFWRHL 195 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 22/207 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E V D + + ++P PI + + I+E V Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLFIKPPVPIPAHIVELTGISEEHV 458 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + + + G VAHNA FD L + I T+ LAR + Sbjct: 459 RNAKSFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKPLDNPVIDTLDLARSM 518 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 Y + ++ + HRA YD + A ++++N + ++ Sbjct: 519 QDRKGYRLGQIARSYGIRYDEDV---AHRADYDAEVLANTYMNMLNDLKH----IQNLAA 571 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193 + +F K R K V+ + + G Sbjct: 572 LQDMQNARSFTKVRAKHVTILVKNAAG 598 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+EIA++ + + +I++ L+ P + ++P + I+ + Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDL 468 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 ++P I ++P + + +AHN SFD L ++ +I T+ LAR Sbjct: 469 KNQPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYC 528 Query: 107 WP-GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++Y N+ +L K K++ + +HHRA+ D IT + ++N Sbjct: 529 LDSNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 23/172 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I ++ +++GK++ LV P R I P+++ H I Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575 Query: 56 AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV +P I +V+P + V HN +FD R L + T+ LA Sbjct: 576 EMVQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLAS 635 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 P A+ + + H AL D +TA + + ++ Sbjct: 636 IAQPHEPSHSLEAIAARLGVEIT-----QRHNALSDALVTAEVFLRLLPLLK 682 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 16/157 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++DTET GL I+EI + V + +IV+ L++P + A+ IT M+ Sbjct: 22 YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDML 81 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP-----EMPGEWICTMKLARRLWPGI 110 D P I V + + + + HN SFD R L ++ +++ TM+ AR+L+P + Sbjct: 82 EDMPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPEL 141 Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 K+ ++ + HRAL DC T L Sbjct: 142 KHHRLSDLTDY-----LGLHNNEHRALADCIATKELY 173 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 23/196 (11%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL I++I + + GK+ LV P RPI P + IH I Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MVA +P I+ V+P + VAHNA+FD R L + T+ L+ Sbjct: 601 DMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSA 660 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + P + + A+ + + V + H AL D +TA + + ++ + Sbjct: 661 VVHPNQESHRLEAIAERFSITV-----VGRHTALGDAMVTAEVFVRLIPLLHAMGIETLG 715 Query: 164 ITGRPSLMTTFTFGKY 179 + T + KY Sbjct: 716 QAREAAQKTYYARLKY 731 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 23/180 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV IA V +++G+I+ + +V P RPI +++ H IT+ Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITD 278 Query: 56 AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 MV DKP V+P + VAHNA+FD + L + TM L+ Sbjct: 279 DMVVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338 Query: 105 RLW-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 L P +S + + + H AL D +TAA+L+ + Q D Sbjct: 339 FLDGPDAGHSLDDICDRYGIEIT-----DRHTALGDAMVTAAVLLRQIEALEGRGIQTLD 393 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 24/167 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEA 56 +ID ET GL I+EI +V V +G + + P+ + +SP + IT++ Sbjct: 57 YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116 Query: 57 MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 + P +++P + G V HN +FD L + ++ T KLA+ Sbjct: 117 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 176 Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 + PG+ YS AL K + +HHRA+ DC +T +L + Sbjct: 177 TVVPGLSHYSLEALCKHFGIA------GNHHRAVDDCELTEKVLDAL 217 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 29/235 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL ++E A++ +I++ + L+ P+R +S ++ IH+I++AM+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAML 68 Query: 59 ADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103 DKP +V + + V H+ FD +VL + I T++LA Sbjct: 69 RDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLA 128 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + S AL + + P +HRA+ D + + + T Q+ Sbjct: 129 KEYGDSPNNSLEALARHFNV-----PHQGNHRAMKDVEMNVKVFKHLTKRF-RTLSQVTH 182 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 I +P M GKY+G+ +D+ YL W +L +++ ++ Sbjct: 183 ILSKPIKMKYMPLGKYKGRLFTDIP---LEYLLWALK--MDFDQDLLFSIRSEIK 232 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 27/219 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I+++ V V DG+I+N + P + + I Sbjct: 24 IYSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIINHFETKINPRVAVPRHITQLTGIKNN 83 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 V + P ED+ + +VAHN +FD L P + + I T+ L++ Sbjct: 84 DVRNAPLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLSQ 143 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P +K + L + + H H A+ D TA LL+D+M T E Sbjct: 144 ILMPTVKSYRLRDLTSSLSIEHD-----HPHSAVSDAEATAHLLVDLMKQLRELPTLTLE 198 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS-DVAERDPGYLRW 197 ++ ++ TT + + V+ + D Y+ Sbjct: 199 KLVELKLNLPQQTTMVLEQELERRVANPLPLDDSLYVSH 237 >UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIG6_FLAJ1 Length = 459 Score = 176 bits (448), Expect = 4e-43, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 27/210 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I+D ET G I EIA + +++ LV P++ I P + I MV Sbjct: 6 YAIVDIETTGGNASGSRITEIAIIIHDGKNVLDRYETLVNPEQDIPPSIFGLTGINNEMV 65 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRLW 107 A+ P +D+ + +VAHN +FD L + +W +CT++ AR++ Sbjct: 66 ANAPIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKKLCTVRAARKIK 125 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMADI 164 PG+ YS L + ++++ + HRA D TA L ++ +G + + Sbjct: 126 PGLGSYSLGNLCNSLNISLE-----NRHRAGGDADATAILFSLLLEWDDAGEIEKMIKKT 180 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 L +++ E+ Y Sbjct: 181 AQDQRLPPNLPPD-----DFNNLPEKPGIY 205 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 23/209 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ID E+ G + I EIA + V DG++V LV P +PI P + I++AMV Sbjct: 7 LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66 Query: 59 ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 A+ P E D + +VAH+A FD + E +CT+KL+R L+ Sbjct: 67 AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ AL + L HRA+ D + + + +G+ E +A Sbjct: 127 PEHHRHGLDALIERHGLVCAA-----RHRAMGDVEVLWQFVRGL--EAGFAPEVLARAAA 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 R T G G + + + YL Sbjct: 180 RAMKAPTQPPGLPEGM-LEALPDAPGLYL 207 >UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI99_EUBR3 Length = 245 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 31/215 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID E GL I+EI + V G+IV+ +S LV P + I + + IT++ V Sbjct: 10 YTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVDTISTLVNPKQHIPQRVQELTGITDSDV 69 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 + +++ + ++ G + + N +FD L + + T+K+AR+ Sbjct: 70 ENAADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAYDTLKIARKCL 129 Query: 108 P-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P L + ++ + + HRAL D T + ++ + D G Sbjct: 130 PAEQSKKLEDLCEYFGVSRK-----NAHRALDDAIETKQIFEKLL--------ALMDEKG 176 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201 P Y+ K + LR L Sbjct: 177 EPVESKPLV---YKAKKQTPATAHQVRQLRELMAE 208 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G+ I+EI +V V G + S LV P RP+ + I++ MV Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMV 78 Query: 59 ADKPWIEDVIPHYYG----SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + IE V+P + S+ VAHNA+FD L ++I T++L+R Sbjct: 79 GNASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRA 138 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 L+P + + L + + + HR L D T + Sbjct: 139 LFPQERQHRLVDLIQRFGIADEEE-----HRGLSDALQTVECYERM 179 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 22/192 (11%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55 I DTET GL + +IA+ V++GK+V LV P RPI A IH IT+ Sbjct: 291 YVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITD 350 Query: 56 AMVADKPWIED---VIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104 AMVAD P + +AHNA FD + T+ L+ Sbjct: 351 AMVADAPDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTVLLSA 410 Query: 105 RLWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMA 162 ++ ++S AL + + + P H AL D T + + ++ E Sbjct: 411 VIYGQTEQHSLDALAERLNVTI---PEEARHTALGDALATTEVFLKLLPMLQAKGIETFG 467 Query: 163 DITGRPSLMTTF 174 D+ + Sbjct: 468 DLLAQTKKHARL 479 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 175 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 26/238 (10%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I EI +V V G+ V S LV P +PI ++ IT AM Sbjct: 44 FVVVDLETTGAKPGPESITEIGAVKVRGGETVGEFSTLVNPGQPIPAFITSLTGITTAMT 103 Query: 59 ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWICTMKLA 103 A P I VIP S AHNA FD L + T+ LA Sbjct: 104 ARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVALA 163 Query: 104 RRLW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 RR + + ++ +HRAL D T +L ++ G + Sbjct: 164 RRAFSSDEVPNFKLSTLA----GACGATTAPNHRALDDARATVDVLHAMLGRLG--PLGV 217 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 + + + R ++D R PG R++ D + L+ + Sbjct: 218 THLEDLATATDPVPRARRRKARLADGIARSPGIYRFIGPAGDVLYVGSSSNLRARVRQ 275 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 175 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 22/226 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET G + +IA+ + G+IV V P +PI + + I + V Sbjct: 57 VVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFVTFVNPGKPIPEEVARLTDIHDEDV 116 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108 AD P +D + + G VAHNA+FD+ P WI ++ LAR P Sbjct: 117 ADAPSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLWIDSLDLARIALP 176 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168 +K + + + HRA D A ++ + + Sbjct: 177 RLKSHRL-----IDIVKAFDAPVSTHRADADVEALCAAYRIMLAAIAKMPKDLVSYIAEL 231 Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 + ++ G D+ ++ + + TL+ Sbjct: 232 ADADSWPT----GAVFKDMTNFQQAVCEAKADSPAVLEKKFPFTLR 273 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 28/228 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I++I V V +++N V P + I + IT Sbjct: 6 VYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVINHFETDVNPLKEIPAAISRLTGITNK 65 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLAR 104 V P +DV + + +VAHN +FD + + T+ L++ Sbjct: 66 RVRHAPLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVSLSQ 125 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P + L + + + H A D TA L I + T + Sbjct: 126 ILLPTATSFRLRDLSRLFNIEHD-----NPHSADSDASATAELFIFLFRRLRALPMVTLQ 180 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207 +M D+ L TT F + + + P YL ++ N L P Sbjct: 181 RMIDLQADLPLQTTTLFRVAQ-QLNEQSPRKLPDYL-YIKNGLALRQP 226 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 29/199 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+E+ ++ +G V S LV P+ IS +A I+ IT MV Sbjct: 52 YVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMV 111 Query: 59 ADKPWIEDV---IPHYYGSE-----WYVAHNASFDRRVLPEMPGE--------WICTMKL 102 P + V + + G AHNA FD L + + T+ L Sbjct: 112 KKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSL 171 Query: 103 ARRLWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWT 157 +R++ PG+ K + + HRA+ D + +L ++ + Sbjct: 172 SRKIIPGLSNYKQTTVAKHFNIKNKQE-----HRAISDAEVCGEILWKLLSIKKDEEVKK 226 Query: 158 AEQMADITGRPSLMTTFTF 176 E + P M F Sbjct: 227 LEILVKSKPSPEEMEVCAF 245 >UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria RepID=Q21J48_SACD2 Length = 238 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 26/180 (14%) Query: 3 RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL+ I+EI V++I+ K+ ++P+R I A+ +H IT Sbjct: 4 IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101 +ADKP +D+ + V HNA FD L + T+ Sbjct: 64 LADKPVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161 LAR PG K + AL K + H AL D I A + ++ T G T + Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSARDL---HGALLDAEILADVY--LLMTGGQTNLAL 178 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 22/208 (10%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET GL I+EI +V + +++ S V+P+R +S + I I++ Sbjct: 418 IYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPERNLSEKVTRITGISDRE 477 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 + D P + +V+P + VAHNA+FD R + + +I T+ L++ Sbjct: 478 LEDAPSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLALSKS 537 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 L YS + K KL HHRA D ITA + +++ + + I Sbjct: 538 LLKSKSYSLDNVVKRLKLG-----DFEHHRASEDARITAEVFKKLLSMAKKRG--IKKIA 590 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193 +L R V+ +A+ G Sbjct: 591 ELENLRKHINISSLRPLHVTILAKNKTG 618 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 25/226 (11%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G ++E+ ++++D V P+R I A+ +H IT+ Sbjct: 5 IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDK 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104 V D P + + + G +AHNA FDR + G WI T++LA+ Sbjct: 65 VKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQ 124 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + +PG+ S AL K K+++ H AL D + A + +++ E++ D+ Sbjct: 125 KRFPGMANSLDALCKRYKISLVDRTL---HGALIDARLLAEVYLEL----KGGKERVLDL 177 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELR 210 + R + G + + + ++ L+ Sbjct: 178 SSRRESVAAAAHAAAGGYGLRPRPLAPRLHASEGEAHAAFLAATLK 223 >UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae RepID=D2QE10_9SPHI Length = 180 Score = 174 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 20/173 (11%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G + EIA ++V+ L+ P PI P + I++ M Sbjct: 1 MYCIVDVETTGGVKGPTRLTEIAIFRHDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V D P DV +VAHN FD + + +CT++ +R+L Sbjct: 61 VQDAPTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCTVRTSRKL 120 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 PG YS L ++ ++ P HRA D T L ++ Sbjct: 121 LPGYPSYSLGKLCRSLEI-----PLNGRHRAQGDAAATVLLFEMLLKNDAQGL 168 >UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group RepID=B9Z6P2_9NEIS Length = 476 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 21/171 (12%) Query: 3 RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G + I EI + + DG+ + LV P +PI P + I++AMVA Sbjct: 8 AIVDLETTGGHITRDRITEIGILLI-DGERIERYETLVNPGQPIPPFIENMTGISDAMVA 66 Query: 60 DKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108 + P + + +AHNA FD L E +CT+KL+RRL+P Sbjct: 67 EAPPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRRLYP 126 Query: 109 G-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 K+S +L + + HRA+ D + G A Sbjct: 127 QHFKHSLDSLIARHGIVLA-----DRHRAMADALAVYHFIEAATAELGPEA 172 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 174 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 23/180 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL +V +A V +++G+I+ L+ P R I + AIH IT+ Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104 AMVA+ P E V+P + G VAHNA+FD + L G + TM L+R Sbjct: 566 AMVAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSR 625 Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 ++ ++S L + + + H A+ D +TAA+ + +M+ + D Sbjct: 626 QIQGDHGEHSLDGLAARLGIGL-----VDRHSAMGDSLMTAAIFLRLMDMLETQGIRTLD 680 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 18/189 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L ++DTET GL + +IA+ + G+I + V P +PI + + + I + V Sbjct: 6 LVVLDTETTGLSYNHDELTQIAAARMECGEITDWFVTFVNPGKPIPDEIVRLTNIHDEDV 65 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-------MPGEWICTMKLARRLWP 108 D P ++ + + G + VAHNA FD+ + W+ ++ LAR P Sbjct: 66 VDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECLNRNIWVDSLALARIALP 125 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168 +K + L + HRA D A+ +++ + + Sbjct: 126 RMKSHRL-----IDLVHAFDAPISTHRADADVEALCAVYRILLSAVATMPPDLVEYIANL 180 Query: 169 SLMTTFTFG 177 + + G Sbjct: 181 APREEWPTG 189 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 33/229 (14%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G ++E+ +++ D V P+R I P A+ +H IT+ Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDK 64 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM----------PGEWICTMKLAR 104 V D P ++ + + G +AHNA FDR + WI T+KLA+ Sbjct: 65 VKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQ 124 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 +PG+ S AL K K+++ H AL D + A + +++ E++ D+ Sbjct: 125 ARFPGMPNSLDALCKRFKVSLVERTL---HGALIDARLLAEVYLEL----RGGKERVLDL 177 Query: 165 TGRP--------SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSM 205 + P ++ T + + A+ E ++ +L L Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDR 226 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 27/178 (15%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVN--PMSHLVRPD------RPISPQAMAI 50 + + D ET GL IVEI ++ V+DG++V LVRP PI +A + Sbjct: 3 VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62 Query: 51 HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98 H I++AMV D P + V+P + G AHN FD + C Sbjct: 63 HGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEYC 122 Query: 99 TMKLARRLWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 T++L+RR +P + N+ L + L+ HR+L D +TA + +M Sbjct: 123 TVQLSRRAFPRERTHNLDVLAQRLGLSFA---PGGRHRSLGDVQVTAEAFVRLMERLS 177 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 21/172 (12%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GL IV+IA+V +++G+ V LV P RPI + A+H ITE Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITE 569 Query: 56 AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104 AMVA P I +V + VAHNA FD L + T+ L+ Sbjct: 570 AMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSA 629 Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155 ++ + +S AL + + P H AL D TA + ++ Sbjct: 630 VVFGAAEGHSLDALTHRLGITI---PEEARHTALGDTVATAEAFLRLLPALK 678 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 31/193 (16%) Query: 3 RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G+ ++EI +V+V++ ++ + P+R I P+A+ +H IT Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM------------------PGEW 96 VAD+P D+ Y V HNA+FD + Sbjct: 64 VADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123 Query: 97 ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 + T+ +AR+L PG + + AL K ++ H AL D I + + + + T G Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVL---HGALLDAEILSDVYLTM--TGGQ 178 Query: 157 TAEQMADITGRPS 169 TA +A I R Sbjct: 179 TALSLAGIEERAG 191 >UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTS6_BACTU Length = 286 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 63/170 (37%), Gaps = 22/170 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET I EI +V IDGK+V+ S L+ P+ I + IT M Sbjct: 19 FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLINPEMKIPANITKLTGITNDM 78 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVL--------PEMPGEWICTMKLARR 105 V KP V+P + VAHNA FD R L E + ++ + + Sbjct: 79 VQGKPVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSVAVFQH 138 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 P KY T + HRA D T L+++ Sbjct: 139 FCPNKGKYKLDDFCTTFG-----YLNKNRHRAYEDAEATGYCLLELKRRF 183 >UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes RepID=A0LZ46_GRAFK Length = 457 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 24/209 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M I+D ET G + GI EIA K+V+ LV P++PI P + + I M Sbjct: 1 MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 + + P +V VAHNA FD R+L E + +CT++L+++L Sbjct: 61 LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 PG+ YS L ++ + P HRA D T L ++ + + Sbjct: 121 IPGLPSYSLGKLVRSLGI-----PLSDRHRAAGDAQATIKLFKMLLAKDVE--KDIMK-- 171 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 + ++ Y Sbjct: 172 EHVRKEPKRNLDTKLVFILEELPSETGVY 200 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 22/161 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G Q I++ A+ V GK + + + P++PI + I+ Sbjct: 6 YIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKD 65 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105 V + P EDV P +VAHN SFD L + + T++LAR Sbjct: 66 VKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARI 125 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA 145 ++PGI Y L L P HRA D +TA Sbjct: 126 MYPGIDSYKLQDLSDEFNLGHDKP-----HRADSDAEVTAD 161 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 20/158 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET G ++E+A+V DG+ + S L+ P P+ + + I AM+ Sbjct: 6 FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAML 65 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 A KP IE+V+P + G VAHNA FD L +P T +LAR Sbjct: 66 AGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVAL 125 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITA 144 P + +A L + L P HHHRA D Sbjct: 126 PLARNHRLATLAELLGL-----PLEHHHRAEDDARACG 158 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G ++EI + DG+I +S VRP +PI P + IT+ Sbjct: 5 FVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIPPFISQLTGITDED 64 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105 VA + P +VAHN FD L E G I T++LAR Sbjct: 65 VAQAESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVELARI 124 Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAA 145 L P + +++ L + +L HRA D TA Sbjct: 125 LLPTAESHSLSHLTEALQLTHH-----EAHRAGSDAEATAE 160 >UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Proteobacteria RepID=Q3SKJ9_THIDA Length = 470 Score = 172 bits (438), Expect = 5e-42, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 27/211 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + EI V V+DG V S LV P+R I + I+ MV Sbjct: 10 LAFVDLETTGANAARDRVTEI-GVVVVDGDRVETWSTLVNPERAIPQFIQQLTGISNEMV 68 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 AD P V ++AHNA FD L + +CT++L+RRL+ Sbjct: 69 ADAPTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRFRADVLCTVRLSRRLF 128 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT--AEQMADI 164 P +++ +L L + HRAL D + + AE +A Sbjct: 129 PEHYRHNLDSLIARHGLATEG----DRHRALADADLIWQFWRTLQREHEAQALAEAVAHQ 184 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 RP+L + D+ E YL Sbjct: 185 LLRPALPPHLDP-----ALLEDLPESPGVYL 210 >UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria RepID=Q0HVL5_SHESR Length = 239 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 26/210 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL +EI +V + G+I S L+ P I+ I+ M Sbjct: 40 LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 +A +V + G VAHNA+FD+R L + PG++ C++ LARRL Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +P +A K Q P HRAL D +T L + ++ IT Sbjct: 160 YPEAINHQLATLVRHK---QLPTDGTFHRALADAEMTGHLWLRMLADLKQG----YAITE 212 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 P + K + ++V + Y R Sbjct: 213 PPFSLMQKIMTKTK----AEVPKFLRQYAR 238 >UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae RepID=C9M9P8_9BACT Length = 208 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL I+E+ ++ + GK S L+ P PI +IH IT+ MV Sbjct: 12 YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV----LPEMPGEW-----ICTMKLARRL 106 A +P +E+VI + G V HNA FD L ++ +W T+ L+R Sbjct: 72 AGQPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVA 131 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164 +PG++ YS +L + HHRAL DC+ T L + ++AD+ Sbjct: 132 FPGLRSYSLESLSDFFEFK-----EGVHHRALCDCWYTQQLFTRFLEKVDQLRCLELADL 186 Query: 165 TGR 167 Sbjct: 187 AHE 189 >UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K928_THASP Length = 502 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 82/214 (38%), Gaps = 30/214 (14%) Query: 2 LRIIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L +D ET G + I EI V V DG V S LVRP I + I + M Sbjct: 12 LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASRIPETIQRLTGIDDDM 69 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106 VAD P ED+ +VAHNA FD L +CT+KL+RRL Sbjct: 70 VADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRL 129 Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163 +P + L + L V HRAL D + I G + + Sbjct: 130 FPDHRRHGLDHLIERHGLAVA-----DRHRALGDARLLWQFWQKIHERFPPGHIDAAVRE 184 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRW 197 + G PSL + ++D+ + YL + Sbjct: 185 LIGHPSLPPHLDPEQ-----IADLPDTPGVYLFY 213 >UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN Length = 910 Score = 172 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 25/210 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL ++++A+ + G ++ + P P+S + IT+ V Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV 484 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 + +E V+ + VAHNA+FD LP++ I T++ AR L Sbjct: 485 KNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNL 544 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163 +P K + L K + ++ HHH A YD T LL + +A Sbjct: 545 YPEYKRHGLGPLTKRFGVALE-----HHHMANYDAEATGRLLFIFIKEVAEKHGVTDLAR 599 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 + L++ ++ K R K + + G Sbjct: 600 L--NIDLISPDSYKKARIKHATIYVKNQVG 627 >UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK59_9BACT Length = 228 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 22/182 (12%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +IDTET GL I+ +A+V V + KI++ + + P+ I +++ H IT+ M Sbjct: 44 VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 VADKP +V+P + V H+ +FD +++ ++ W+ TM + Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSH 163 Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +YS L + H AL D TA + ++ + + + + Sbjct: 164 AIIKKDERYSLDYLLDLYNVTCNG-----RHTALGDALATAEVFTKMIMQASREFKTVRE 218 Query: 164 IT 165 + Sbjct: 219 LC 220 >UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC319F Length = 234 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 36/222 (16%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL I+E+ +V DGK V+ + L+ P I + I I + MV Sbjct: 5 FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMV 64 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 + P+I+D + + G++ + HN FD + E E I T+K A+++ Sbjct: 65 SKAPYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVL 124 Query: 108 P-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + L + + HHRA D A + + ++G Sbjct: 125 PANESKNLEHLCEMFDI------VTIHHRAYEDAMSAANVYFRLCE-----------LSG 167 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 +++ + F K + ++ + YL+ L ++ P+ Sbjct: 168 EETIVEQYHFKKQKAAGIT---PKQVNYLKSLIER-HNIKPD 205 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 21/169 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID E G ++++A+V V G I S LV P I + + IT AM+ Sbjct: 19 FVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAML 78 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 +P IE+V+P + G V H D + + + +CT+KLAR++ Sbjct: 79 VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKV 138 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +PG+ KYS + + HRAL D +TA + I I+ Sbjct: 139 FPGLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILEEL 182 >UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26FQ2_9BACT Length = 466 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 22/210 (10%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G + + EI V + I++ S L+ P+ I + I AM Sbjct: 7 LYCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLIDPEVLIPDYITTLTGIDNAM 66 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106 VA P DV + +VAHN +FD VL + + +CT++L+R L Sbjct: 67 VASAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLSREL 126 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 PG++ YS L + P ++ HRA D T L ++ T + Sbjct: 127 IPGMRSYSLGKLCDDIGI-----PLINRHRAEGDTDATVILFQKLI-TIDQEGDIFNKFI 180 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 TF R + E YL Sbjct: 181 KGNFKEGTFPPHLDR-TQFDQLPETPGVYL 209 >UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLT9_9FLAO Length = 375 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 41/241 (17%) Query: 2 LRIIDTETCGLQ-GG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I EIA ++V+ L+ P+RPI P + I MV Sbjct: 3 YAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMV 62 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 P V VAHNA FD R+L + +CT+ L++RL Sbjct: 63 QTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLI 122 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTA------- 158 P +S L ++ + P + HRA D T LL +++ +G T Sbjct: 123 PDAESHSLGKLVRSLGI-----PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRA 177 Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218 E + +++ R + + V + + Y + + + + + +K L Sbjct: 178 ETLGELSNR------------QLRFVEEAPDSVGVYYLY-DKDGNLLYLDGTRDMKRSLN 224 Query: 219 N 219 Sbjct: 225 R 225 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 172 bits (437), Expect = 8e-42, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 28/190 (14%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVN--PMSHLVRPDRP------ISPQAMAI 50 + + D ET GL IVEI ++ V++G++ LVRP I A + Sbjct: 3 VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62 Query: 51 HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98 H I+ MV P IE+V+P + G VAHN FD + C Sbjct: 63 HGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHC 122 Query: 99 TMKLARRLWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 T++L+RR +P + N+ L + LN HR+ D +TA + ++ T Sbjct: 123 TVQLSRRAFPKERAHNLTVLAERLGLNFA---PGGRHRSFGDVQVTAHAYVRLLELL-AT 178 Query: 158 AEQMADITGR 167 AE ++G+ Sbjct: 179 AEPQQRVSGK 188 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 172 bits (437), Expect = 8e-42, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 22/164 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G I EI +V V DGKIV+ + LV P R +S + + I+ M+ Sbjct: 11 YISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEML 70 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLAR 104 D+P IED++ + ++ V HN FD L I TM + R Sbjct: 71 EDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDR 130 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148 L+P ++ + L + + + HRAL D T L Sbjct: 131 LLFPSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCLE 169 >UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria RepID=A1BGS1_CHLPD Length = 219 Score = 172 bits (436), Expect = 9e-42, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 25/206 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL +EI +V V G+IV+ L+ P IS + IT M Sbjct: 9 VVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEM 68 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 ++ +P E+V + VAHNASFDRR L G C++ ++RR+ Sbjct: 69 LSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159 + + + P HRAL D +TA L + +++ + Sbjct: 129 YQDSPNHKLQTLVSH---AGIPEIGSFHRALADAEMTAHLWMSMIDRIRLQYGISMIFFD 185 Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS 185 Q+++++ L T + + Sbjct: 186 QLSELSKIDKLYTHRYLTALADEPLR 211 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 71/183 (38%), Gaps = 23/183 (12%) Query: 1 MLRIIDTETC---GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++IA V + KI+N S L+ P I + + I M Sbjct: 33 IYAVVDLETTRTTSESGRIIQIAIAFVQNKKIINQFSTLINPHESIPRNVVQLTGINAEM 92 Query: 58 VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARR 105 VA P E+V +VAHN +FD L I T+ L++ Sbjct: 93 VAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQI 152 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161 +WP + + V P H+A D TA LLI I N T + + Sbjct: 153 VWPTAPGFRLVDLTSYLALVHGRP----HQADSDALATAELLIQIFNRLESLPMVTLQSL 208 Query: 162 ADI 164 D+ Sbjct: 209 VDL 211 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 42/232 (18%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + + D ET G I+EIA+ V G I L+ P+ +S I IT+ M Sbjct: 411 VYTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEM 470 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105 V ++ IE+V+P + VAHNASFD L P I T+ +AR Sbjct: 471 VENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARY 530 Query: 106 LW--------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITA 144 + P +K N+ AL K K+N++ HHRA+YD Y TA Sbjct: 531 FYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATA 585 Query: 145 ALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 + ++++ E + + SL + K + +A+ GY Sbjct: 586 EVFLNMLQDFYKE-EIYSYFELQASLDMNEVWRHPIPKYATVLAQTQEGYKN 636 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 23/210 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL ++E +V + +G ++ ++P I I+ MV Sbjct: 393 YVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQLFIKPPISIPAFIEKKTNISNEMV 452 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + +V+ G VAHNASFD L E + I T+ +AR + Sbjct: 453 RNAKSFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDMARAI 512 Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163 + KLN HRA YD I A ++ + E + D Sbjct: 513 LSDRSRFALEYVSNHYKLNYSRS---DAHRADYDANILADAFEHLLVDAKRQFQVETIRD 569 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 + + + T F + K +A+ G Sbjct: 570 LQDK--VHTDSDFKRMFSKHAIVIAKNQAG 597 >UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae RepID=Q2GJZ1_ANAPZ Length = 244 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 21/174 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL I+EI V+++D + + P+R IS A +H IT Sbjct: 6 IVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRES 65 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLAR 104 + P +V + V HNA FD R L + + T+++AR Sbjct: 66 LIGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMAR 125 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158 + +PG+ S AL K ++ Q H AL D + A + ++++ Sbjct: 126 KKFPGMPASLDALCKRFNISTQ---ERKFHGALKDATLLARVYVELLEALQRRL 176 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 27/219 (12%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56 + ++D ET G I++I V V DG+I+N + P I + + I + Sbjct: 18 IYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIINHFETKINPREKIPRSIVQLTGIEDK 77 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104 V P ED+ I +VAHN +FD L P + I T+ L++ Sbjct: 78 DVRKAPLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLSQ 137 Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159 L P K + L + + H H A+ D TA LL D++ T E Sbjct: 138 ILLPTAKSFRLRDLTSSLHIEHD-----HPHSAVSDAEATADLLNDLLKRVQELPTLTLE 192 Query: 160 QMADITGRPSLMTTFTF-GKYRGKAVSDVAERDPGYLRW 197 ++ + T F + + + S + Y+ Sbjct: 193 KITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEELYVSH 231 >UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae RepID=A0M4R6_GRAFK Length = 507 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 22/208 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET G I EI + V +GK+++ S LV P + I + I + MV Sbjct: 6 FAITDIETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMV 65 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 + P ++ +VAHN +FD ++ + +CT++L ++L Sbjct: 66 FNAPQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLI 125 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 PG+ YS + + + P + HRA DC T L ++ E + + Sbjct: 126 PGLFSYSLGNICTSINI-----PHIDRHRAKGDCDATVTLFQRCIS-LDPEFEVINQLLN 179 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194 + + + ++ + Y Sbjct: 180 QKTAASYLPPN-FKSSDFEKLPITTGVY 206 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 171 bits (435), Expect = 1e-41, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 28/245 (11%) Query: 2 LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 + DTET G + +++ ++ V + V L PI +AM +H IT ++ Sbjct: 4 YVLFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLE 63 Query: 60 DKPW-----IEDVIPHYYGSE-WYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPG 109 +KP + E + +AHN +FD ++ + + I T++ A+ L+ Sbjct: 64 NKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123 Query: 110 IKYSNMALYKTRKLNVQ---------TPPGLHHHRALYDCYITAALLIDIMNTSGW---- 156 + Y + Y L++ + H A+ D + L ++ Sbjct: 124 LPYHRLQ-YLRYALDLYKFEENEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182 Query: 157 --TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214 E++ ++T P + TF FGKY+G+ + +VA+ D YL W+ +++ + +++ TL Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242 Query: 215 HYLEN 219 L N Sbjct: 243 KVLGN 247 >UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2 Tax=Campylobacter RepID=C6RD51_9PROT Length = 311 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D ET G G I+EI ++ + +G+I+ V + + IT + Sbjct: 72 IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVYAP-YVPENISELTGITAEHL 130 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P + V+ + G +VAHN FD + E+ +CT+ LARR Sbjct: 131 KNAPSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGYGELLNRKLCTIDLARRT 190 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163 KY L + ++ HHRAL D A + + T E + + Sbjct: 191 IASPKYGLGTLKEILGIDNT------HHRALSDAIAAAEIFKYSLQKLPSEVRTTEDLIE 244 Query: 164 ITGRPSLMTTF 174 + M Sbjct: 245 FSKSAKTMKRL 255 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 25/203 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 I+DTET GL ++EI V+++D +I + P+R IS +A +H IT Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103 +AD P D+ + GS VAHNASFD R L I T+ +A Sbjct: 67 LADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMA 126 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 R+++PG S AL + +++++ H AL D + A + I++ S + M+ Sbjct: 127 RKIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIEL---SKGSQVSMSF 180 Query: 164 ITGRPSLMTTFTFGKYRGKAVSD 186 + G + F + ++ Sbjct: 181 LEGSSASSEKKMFKEREKLIITP 203 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 30/217 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G I++ + V GKIV + P R + + + + IT Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIVETYVSDINPQREVPERIIQLTGITPER 66 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + P + V + +VAHN +FD L PE+ E I T+ L++ Sbjct: 67 LKKAPTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVTLSQI 126 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160 L P + Y L + H H A D TA LL+ ++ T EQ Sbjct: 127 LLPTLSSYRLQDLSTYFNI-----IHNHPHTADSDALATAKLLLILLRQVKMLPRRTLEQ 181 Query: 161 MADITGRPSLMTTFTF----GKYRGKAVSDVAERDPG 193 + I L T F + R +++++ Sbjct: 182 IIQINPSLPLDTMKVFIQVNDENRSESLAEKLPDQLK 218 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 36/224 (16%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 I+D ET G+ I++IA + D +++ S + D+P+ ++ I+ Sbjct: 4 YVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKRFSTYINYDKPVPAFIQSLTGISGEH 63 Query: 58 VADKPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 + + P E+V P ++VAHN FD + L E G I T++LAR Sbjct: 64 LKNAPLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPVIDTVELARI 123 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQM 161 P ++ H+A D T AL ++ + T + + Sbjct: 124 CLPSEDSYRLSDLA----KTVQATHTAPHQADSDVEATRALFNELFDKISGLPSETLDHL 179 Query: 162 ADIT-----------GRPSLMTT-FTFGKYRGKAVSDVAERDPG 193 ++ T F F +YRG A+ V Sbjct: 180 ISLSPHFKSDITEILRECRQHTVAFGFDRYRGMAIKSVHPHRKD 223 >UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZE6_POLSQ Length = 466 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 66/189 (34%), Gaps = 21/189 (11%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + I EI + + I L+ P I + I+ MV Sbjct: 11 LAFVDIETTGSHFDRDRITEIGIKTLANDGI-QVWERLINPQTFIPQNIQRLTGISPQMV 69 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 +P + V + +VAHNA FD + + +CT+KL+R L+ Sbjct: 70 EGQPSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKVLCTVKLSRLLF 129 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT--AEQMADIT 165 P N+ +N HRAL D + G E + + Sbjct: 130 PEQPRHNLDTI----INAHGLQVSARHRALGDADLLLQFWRVCEAKFGAEKLNEVINQLI 185 Query: 166 GRPSLMTTF 174 G PSL Sbjct: 186 GNPSLPPNI 194 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 170 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 28/204 (13%) Query: 1 MLRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55 + + DTET GL + IV+I ++ ++DGK+V LV P PI + IH IT+ Sbjct: 273 VYCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITD 332 Query: 56 AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104 MV +P I + + VAHNA FD L + T+ ++ Sbjct: 333 KMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVLVSA 392 Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 ++ + + + + ++ H AL D +TA + ++ + + Sbjct: 393 IIFGTTERHMLDVVCERLGIRIEKK---DRHTALGDARVTAEAMKRMLP--------LLE 441 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDV 187 G + + RG+ V+D+ Sbjct: 442 ARGIKTFGKLIAETRKRGRLVADL 465 >UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q8L3_PSYCK Length = 242 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 14/220 (6%) Query: 4 IIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62 IIDTET G +++A+++V G R ISP + +H IT+ VA Sbjct: 13 IIDTETDQGRDPRPIQVATINVATGF---EWMKYFNSGRSISPVVIRVHGITDDDVAGLE 69 Query: 63 WIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY--KT 120 E + + E+ + HN FD RV+ + ICT++LAR +P + + Sbjct: 70 RFE--LEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQL 127 Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMT---TFTFG 177 + + H AL D + L A + FG Sbjct: 128 LGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKMPFG 187 Query: 178 KYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217 K++G + +V Y++W+ N+ +M P L L + Sbjct: 188 KHKGMPIKEVP---ISYVKWMLGNIHNMQPSLYSALTKRI 224 >UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes RepID=D1YAF0_PROAC Length = 633 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 29/214 (13%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G I EI +V V G++ LV P I + IT+ MV Sbjct: 68 FCVVDLETTGTSEGSQITEIGAVKVCGGRVEGEFQTLVCPTGSIPASVQVLTGITDVMVR 127 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW 107 P + V+P + S VAHNA FD L + + T+ LAR + Sbjct: 128 SAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPWDDPAVVDTLALARSVL 187 Query: 108 P--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161 ++ ++ HRAL D T +L +++ G T E + Sbjct: 188 ARGEVRNYKLSTLSRL----FHTTTTPSHRALADARATVDVLHGLIDRVGNLGVTTLEDL 243 Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195 ++T R + D+ E+ Y Sbjct: 244 LEMTHRVPQARRRRRVWAK-----DLPEKSGVYW 272 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 28/217 (12%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET GL+ I+EI +V DG V S LV P R + + + I + + Sbjct: 86 FVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHRRLPVYIVRLTGIRDEDL 145 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 P DV + G + +N FD L +P + + LAR L Sbjct: 146 LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPLARAL 205 Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164 +Y A+ ++ L HRAL D TA L + ++ + +D+ Sbjct: 206 LTANGRYDLDAICRSIGLA-----RGTRHRALPDAEATAVLYLHLVERAEQVGYRSPSDL 260 Query: 165 TGRPSLMTTFTFGKYRGKA------VSDVAERDPGYL 195 + T RG+A ++D E YL Sbjct: 261 QPAATRRTIVVEPVARGRAVLDQRLLADTPELPGVYL 297 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 23/181 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET GL IVEI ++ G V P RPI +A+AIH IT+ MV Sbjct: 10 FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMV 69 Query: 59 ADKPWIED---VIPHYYGS-EWYVAHNASFDRRVLPEMPG---------EWICTMKLARR 105 P + + + + E V HN SFD L T LAR+ Sbjct: 70 EGAPGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARK 129 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMAD 163 +PGIK YS +AL + L+ G HHRAL DC +A+L I+ G+ + D Sbjct: 130 AFPGIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKD 184 Query: 164 I 164 + Sbjct: 185 L 185 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 170 bits (431), Expect = 4e-41, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 30/214 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID E+ GL I+EIA++ IDGK L+ P P+ + + ITE M+ Sbjct: 3 FLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKERFEKLINPGCPLPERITELTGITEDML 62 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRLW 107 A +VI + G + + HN S D + + I T+ L+R L Sbjct: 63 AGAMTEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQGIDTLYLSRTLK 122 Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 + K + ++ + + + HRAL D A L + E + Sbjct: 123 SDLEKKNLESMCEHYGIIRECS-----HRALEDAIAAATLYQKLYEEFNNNFEALFLPVE 177 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 KY+ K + E+ YL L N Sbjct: 178 L----------KYKVKKQEPMTEKQKKYLLDLVN 201 >UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria RepID=Q0C6A4_HYPNA Length = 232 Score = 169 bits (430), Expect = 4e-41, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 23/169 (13%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57 DTET GL I+EI +V++I+ L+ P +S + I IT+ Sbjct: 8 IAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITGITDDH 67 Query: 58 VADKPWIE-----DVIPHYYGSEWYVAHNASFDRRVLPE----------MPGEWICTMKL 102 + DKP E D + G VAHNASFDR L W+ T+++ Sbjct: 68 LRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQM 127 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 AR+ +PG S AL K +++++ H AL D + A++ ++++ Sbjct: 128 ARKRYPGAPASLDALCKRFDISLESRT---FHGALLDSQLLASVYLELL 173 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 169 bits (429), Expect = 6e-41, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 26/192 (13%) Query: 2 LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D E G I++I V +GKIV+ V P RPI + IT+ Sbjct: 6 YAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQ 65 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V + P D++ Y +VAHN FD L PE+ + T+ L++ Sbjct: 66 VQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQI 125 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 ++ K Y L K+ H A D TA LLI I T E+ Sbjct: 126 VFSFTKGYRLRDLTSYLKIEHD-----DPHSADSDAIATANLLIAIKKNLQQLPIVTLER 180 Query: 161 MADITGRPSLMT 172 + ++ T Sbjct: 181 LVELGKDLPRQT 192 >UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae group RepID=Q4ZNE2_PSEU2 Length = 204 Score = 169 bits (429), Expect = 6e-41, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + +ID ET G+ EIA V + G+IV L+ I + I+ M Sbjct: 5 IAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNM 64 Query: 58 VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106 + P E V+ + GS VAHNASFD++ + C++ LARRL Sbjct: 65 IRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRL 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159 PG + + P HRA+ D + A L + N T + Sbjct: 125 MPGAPNHKLGTLTRY---ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISHQ 181 Query: 160 QMADITGRPSLMTTFTFGKYRG 181 + + P+ + T + RG Sbjct: 182 MLCSLQKVPAAKISETLKRQRG 203 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 169 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 31/216 (14%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP--ISPQAMAIHRITEA 56 ++D ET G I+ IA+V + +GKI+ L+ P + IS + I++ Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464 Query: 57 MVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWICTMK 101 ++ +KP I++++ + + VAHNASFD L E I T+ Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLT 524 Query: 102 LARRLWPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTA 158 LA++ + +KY S + K+ K+ + +H AL+D TA + ++++ Sbjct: 525 LAQKYFNKILKYFSLEKIVKSFKIKLD--SEGQYHNALFDARATALIFLEMLEQLEAQKI 582 Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194 D+ G + + V+ + + GY Sbjct: 583 FNFYDLQGSLDIKFERPY------HVNIIVKNKKGY 612 >UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M5F0_CAPGI Length = 453 Score = 169 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 20/168 (11%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 M IID ET G + I EIA K+ + L+ P++ I + + I+ Sbjct: 1 MYAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISLINPEKKIDDFVVRLTGISNKT 60 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL----PEMPGEW----ICTMKLARRL 106 V P +V VAHNASFD RVL + ++ +CT+++++RL Sbjct: 61 VRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTLCTVEMSQRL 120 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 P YS L ++ + P L+ HRA D T L +++ Sbjct: 121 LPDEPSYSLGKLTRSLGI-----PLLNRHRANGDAMATVHLFKLLLDR 163 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 18/217 (8%) Query: 1 MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ID ET GL+ I+EIA+V +++ S LV+P + + + IT M Sbjct: 4 IYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGITADM 63 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPGI 110 +A P +V P + + V HN FD R+L +P T +LA L P Sbjct: 64 LASAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLMPRT 123 Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169 Y AL T ++ HRAL D +T + + ++ A + D+ Sbjct: 124 PAYRLSALAATLGIHHD-----EAHRALSDADVTRQIFLYLLRRIE--ALPLDDLNEIMR 176 Query: 170 LMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206 L + +G + A+ ++ + D Sbjct: 177 LTSQIEWGLRSLFEEAQRAKARRVFVDAIPIQADRYD 213 >UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU82_9GAMM Length = 528 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 25/201 (12%) Query: 3 RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D ET G I+EI + + GK++ V P+ + P + I +M+ Sbjct: 25 VLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSFVDPETVLPPFIQKLTGIAPSMLR 84 Query: 60 DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWP 108 P +V VAHNA FD L +C++K +R L+P Sbjct: 85 GAPLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKPLCSVKFSRSLYP 144 Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMA 162 K + K +L P + HRAL D + + G T + Sbjct: 145 QFKRHGLDQIIKRFQL-----PIENRHRALDDAEMIQRFFLKSSALFSDEEIGATCASLL 199 Query: 163 DITGRPSLMTTFTFGKYRGKA 183 P L+ K A Sbjct: 200 KNPALPPLLKASDIKKLPASA 220 >UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1 Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE Length = 289 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 24/191 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D ET G G I+EI ++ + +G+I+ V + + IT + Sbjct: 72 IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVHAP-YVPENISELTGITAEHL 130 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106 + P + V+ + G +VAHN FD + E+ +CT+ LARR Sbjct: 131 KNAPNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGYGELLNHRLCTIDLARRT 190 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163 KY L + +N HHRAL D A + + T E + + Sbjct: 191 IASPKYGLGTLKEILGINNA------HHRALSDAIAAAEIFKYSLQKLPSEVKTTEDLIE 244 Query: 164 ITGRPSLMTTF 174 + M Sbjct: 245 FSKSAKTMKQL 255 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 168 bits (427), Expect = 9e-41, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 21/169 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET G I++I +V + DG+++ S L+ P+R I AI I Sbjct: 8 IAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHSMLLNPERNIPTHITAITGIQSDQ 67 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 V D P V ++VAHN FD L + T++LA+ Sbjct: 68 VQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPALDTVQLAKIF 127 Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 P ++ L + LN Q H AL D +TA LL + + + Sbjct: 128 LPQAPGFNLQDLSQFFGLNFQ-----DAHDALGDARMTAHLLDVLAHQA 171 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 168 bits (427), Expect = 9e-41, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%) Query: 1 MLRIIDTETCGLQGG---IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + D ET GL I+ + +V ++ +++ LV P RPI + +H +T Sbjct: 442 LYTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTW 501 Query: 56 AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---PGEWICTMKLARRLWPG 109 M+ DKP +E+V+P + VAHN +FD L ++ + T+ LA L+P Sbjct: 502 EMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQPPLVDTLLLAHLLFPD 561 Query: 110 IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +K + L + + P L H AL D +TA + ++ Sbjct: 562 LKDHRLERLAERFGV-----PVLGRHTALGDALMTAEVYARMIPLLKE 604 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 27/208 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +ID ET G I+E+ ++ + +G++V S L +P R + + + I+ M+ Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEML 81 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 A P + DV P + G V HN FD L + + + L+R+L Sbjct: 82 ASAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKL 141 Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 P + + + + V+ HR+L+DC T + Q+ +++ Sbjct: 142 LPDLTSHKLCRVSSHFNICVEGM-----HRSLFDCKTTFECFEKCRILAKERYGQVDNLS 196 Query: 166 G--RPSLMTTFTFGKYRGKAVSDVAERD 191 RP T + KA + E D Sbjct: 197 QVFRPIKRTPCP----KLKACDILPECD 220 >UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae RepID=A5LFK6_STRPN Length = 307 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 25/209 (11%) Query: 2 LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET +G + I V DG IV+ L+ P+ + IH IT V D Sbjct: 5 YVALDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLD 64 Query: 61 KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108 P +V I + G + VAH A FD L ++ + +IC+ +LA+ P Sbjct: 65 SPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALP 124 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT--- 165 G + ++L L HH AL D + +L +++T+ ++ + Sbjct: 125 GQLNYKL-----KRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS--DLTAFLKEY 177 Query: 166 --GRPSLMTTFTFGKYRGKAVSDVAERDP 192 + L+ + F + +G + P Sbjct: 178 RYNKTGLLGQYGFKRKKGYQYKENLIYQP 206 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 22/195 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + +IDTET G+ + +IA+ +++GKIV+ V P RPI + + I E+ V Sbjct: 37 IVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDV 96 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108 AD P E+ + + G VAHNA+FD+ + WI ++ LAR P Sbjct: 97 ADAPSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALP 156 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD----I 164 +K + L L HRA D A+ ++ ++ + D + Sbjct: 157 RLKSHRL-----LDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLIDEIAAM 211 Query: 165 TGRPSLMTTFTFGKY 179 T F ++ Sbjct: 212 ATEEEWPTVHVFKQF 226 >UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16 Tax=Bacteria RepID=C4Z5K4_EUBE2 Length = 1513 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 18/209 (8%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET G I+EI +V V +G+IV+ S V P+ PI + + I + MV Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMV 532 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107 + P IE+++P + VAHNA FD + + I T+ LA+ L Sbjct: 533 MNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLM 592 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 P + + + LNV HHRA+ D TA + + ++ D Sbjct: 593 PNLHNYKLDTLT-KHLNVVLES---HHRAVDDAAATADIFVKMIKMLYDRDIPDVDKLNE 648 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196 M K +A + G + Sbjct: 649 EGKMDENAIKKLHQYHCIILASNEMGRIN 677 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 21/183 (11%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + DTET G + +VEI V ++ + L+ P++P+ P+A +++IT+ M Sbjct: 15 VFTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105 +A +P +V+P + + VAHNASFD + ++ + T+ AR Sbjct: 75 LAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARE 134 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 PG+ Y+ L + ++ HRA D + ++ + M D Sbjct: 135 TLPGLQSYALQNLATQFGVQA-----VNAHRAEDDARVCMEFFKIAVSHFFEKNKDMLDY 189 Query: 165 TGR 167 + Sbjct: 190 YKK 192 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 22/172 (12%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G G I++I + + +I++ V P +PI + I++ Sbjct: 7 FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIIDHFESFVNPAQPIDRNIQQLTHISQKE 66 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V + P+ E++ P + +AHN +FD L PE+ I T++LA+ Sbjct: 67 VKNAPYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQLAQI 126 Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 L P Y + L + + + HRA D + TA L + + + Sbjct: 127 LLPTAPGYRLLDLTTYLNITL-----NNAHRANADAHATALLFLSLWQRAEQ 173 >UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHD8_9FIRM Length = 269 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 22/174 (12%) Query: 2 LRIIDTETCGL----QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55 I DTET G I+ IA+V + +G+I LV P R I + IT+ Sbjct: 78 YIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGITD 137 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLA 103 MVADK I V+ + G VAHNA FD L E+ I T KL Sbjct: 138 DMVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLG 197 Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 R L+P + ++ H AL D +TA + +D + Sbjct: 198 RALYPQLLSHDLDTLIRHH----RVKERPRHTALGDSLMTAEIFLDYLKKLEKE 247 >UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF Length = 1465 Score = 168 bits (426), Expect = 1e-40, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 26/217 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL +++IA+ + G IV + P P+S + IT+ + Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHL 486 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 + V+ + VAHNASFD LP++ I T++ AR L Sbjct: 487 QGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546 Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMAD 163 +P K + L K ++++ HHH A YD T LL + + + Sbjct: 547 YPEYKRHGLGPLTKRFQVSLD-----HHHMANYDAEATGRLLFIFLKDAREKHGIKNLLQ 601 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 + L+ ++ K R K + + G L+ +F Sbjct: 602 L--NTDLVAEDSYKKARIKHATIYVQNQVG-LKNMFK 635 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 21/171 (12%) Query: 2 LRIIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + I+++ + D +IV S VRP I + I MV Sbjct: 3 FAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDADMV 62 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 AD P +++V+ VAHN +FD L + G + T++L R L Sbjct: 63 ADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTIELLRIL 122 Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 +P I Y A+ + + HHRA D TA L + Sbjct: 123 YPSITTYQLGAVTELFGIAHD-----QHHRADSDAIATAELFAQSVQKLRQ 168 >UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter RepID=B9KCR0_CAMLR Length = 254 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 24/186 (12%) Query: 1 MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D E+ G G I+EI +V + + K ++ V+ + I + I+ MV Sbjct: 71 IFCVVDIESTGGIKSGQILEIGAVKIQNYKEIDRFESFVKVE-SIPENITELTGISLDMV 129 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 + P ++ V+ + + +VAHN FD + + + +CT+ LA++ Sbjct: 130 ENAPSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLCTIDLAKKC 189 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163 KY AL + + HHRAL D + +L + E++ Sbjct: 190 IESPKYGLDALKEFLCIE------SKHHRALSDALAASEILKYCLKKIPFYIKNTEELLH 243 Query: 164 ITGRPS 169 + + Sbjct: 244 FSKQAK 249 >UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria RepID=Q9JYS6_NEIMB Length = 470 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 23/189 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++D E+ G + E+A V G++V LV P +PI + I++ MV Sbjct: 30 VAVVDLESTGGNLYEDRVTEVALVKFEQGRVV-RHEWLVNPQKPIPQFVAGLTGISDGMV 88 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 AD P ++ VAHN+ FD L +C+++L+R L+ Sbjct: 89 ADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLY 148 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P K+S ++ + + V+ HRA+ D L ++ G E Sbjct: 149 PQFYKHSLDSIIERLGIVVE-----DRHRAMADVSALCDYLEYSLSEHG--VEAWIRQCF 201 Query: 167 RPSLMTTFT 175 R Sbjct: 202 RLMNPKPLP 210 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%) Query: 6 DTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61 D ET G +++IA V + D +I + + P + I + IT V D Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKDWEIERTYTKFINPGKAIPSFIQDLTHITNEDVKDS 61 Query: 62 PWIED---VIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP- 108 E+ I +VAHNA FD LP+ G+ + T++LA+ L+P Sbjct: 62 YPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKILFPM 121 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMADI 164 + + L + + + HRA D TA L +++N T EQM Sbjct: 122 SLGFKLGDLAADLNIELA-----NAHRADDDARATAELFKCCWKELLNLPQLTLEQMHKR 176 Query: 165 T 165 + Sbjct: 177 S 177 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 26/197 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D ET G +++ V + ++V+ + + P I Q + ++ Sbjct: 7 YAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFATNINPLTSIPKQIEHLTGLSNKT 66 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 VA P+ ED+ + +AHN FD L P + + I T++LA+ Sbjct: 67 VAQAPYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMPALQNKGIDTVELAQV 126 Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160 L P Y L + + H+A D +TA L + + T E+ Sbjct: 127 LLPTESSYRLNDLVSKFNIE-----HTNPHQADSDAAVTAELFLVLKQKLKELPLVTVEK 181 Query: 161 MADITGRPSLMTTFTFG 177 M +++ ++ T + F Sbjct: 182 MVELSVNLTMETAYFFK 198 >UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria RepID=A1K1I0_AZOSB Length = 231 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 +ID ET G+ EIA V V +G +++ L+ + + A+ IT AM Sbjct: 31 YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAM 90 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106 V P + V + GS VAHNA+FDR+ +++C++ L+RR+ Sbjct: 91 VRAAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRV 150 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +P + + P HRAL D TA L I +T Sbjct: 151 FPDSPNHKLGTLVR---TLGLPASGRFHRALADAEATAQLFARIAHTL 195 >UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia complex RepID=A0K8A7_BURCH Length = 212 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 18/171 (10%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL EIA + + +G++V+ L+ R I +A+ IT M Sbjct: 11 VAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDM 70 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106 +A P +V+ + G VAHNA FD+R + CTM +ARR+ Sbjct: 71 IATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRI 130 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 +P + ++ ++ P HRA+ D + L + T Sbjct: 131 YPDARSHRLSSLAEM---LRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178 >UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus RepID=B5EMD9_ACIF5 Length = 248 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 20/219 (9%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G+ ++EI +V++ID ++ + P R P+A+ IH +T+ Sbjct: 6 VVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEF 65 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105 + D+P +V + G + HNA FD L + + T+ ARR Sbjct: 66 LQDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARR 125 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165 PG K +L + + H AL D I A + + + + Sbjct: 126 RHPGQKNDLNSLCRRYSVENSHREL---HGALLDTRILAEVYLAMTGGQVDMMGMLGAAG 182 Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDS 204 G + R + + R G LR + + + Sbjct: 183 GSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEE 221 >UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacterium matruchotii RepID=C5VCF0_9CORY Length = 2479 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 88/238 (36%), Gaps = 35/238 (14%) Query: 2 LRIIDTETCGLQ--GGIVEIASVDVID-GKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G IVE+A V + D G+ + S L+ P R IS A IH IT V Sbjct: 2085 YAVVDVETTGFSTADRIVELAIVVLDDDGENLYEWSTLINPMRDISNGA--IHGITAKDV 2142 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEW-----------ICTMKLAR 104 A P + V + +VAHNA FD R+L I T++LA+ Sbjct: 2143 AVAPTFDQVADDVAALLEGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRLAQ 2202 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 P S + + + H AL D T LL + + Q + Sbjct: 2203 NSLPISSRSLDSCLAFMGITNE-----QAHSALSDARATGRLLTRFLLDELPNSAQSVSV 2257 Query: 165 TGRPSLM--TTFTFGKYRGKAVSDVAERDPGYLR--WLFNNLDSMSPELRLTLKHYLE 218 TG + G ++ ER Y+ WL +D M + YLE Sbjct: 2258 TGDAMQPSREVYPLG-------TETMERGNSYMNDDWLSAAIDEMPSSGNVDTDSYLE 2308 >UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum RepID=B3DQ35_BIFLD Length = 235 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 28/172 (16%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 +D ET G I EI +V V +G IV+ LV P RPI Q + IT+AMV Sbjct: 34 YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93 Query: 59 ADKPWIEDVIPHYY----------GSEWYVAHNASFDRRVLPEMPGEW---------ICT 99 AD I++V+P + E V HN SFD R L T Sbjct: 94 ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDT 153 Query: 100 MKLARRLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 M+++R L+P ++ + L + HRAL D T + Sbjct: 154 MQISRALFPAQRHHRLADLIVRFGIA-----DNEEHRALSDAIQTQQCFEWM 200 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 22/166 (13%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ID ET G IVEI ++ V +G+ V S L+ P RP+ + ++ +T+A + Sbjct: 86 YTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLINPQRPLPEEITRLNGLTDADL 145 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105 ++P ++ V+P + G++ + HN + FD L + + I T+ L R Sbjct: 146 RNQPTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMRHIGNKTIDTLPLDRA 205 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 L+P + + + + HRA D TA + Sbjct: 206 LYPEEPKHRLVDIIRRFGIA-----QTESHRAADDALQTAQCYETM 246 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET G + +IA+ + G+IV V P +PI + I + V Sbjct: 10 VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDRDV 69 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108 AD P D + + G VAHNA FDR P + WI ++ LAR P Sbjct: 70 ADAPLPADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 129 Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA 162 +K + L + L HRA D T A+ ++ + Sbjct: 130 RMKSHRLLDLVRAFG------APLSTHRADADVEATCAIFRILLAGVAAMPPALV 178 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 166 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET G+ IVE+A+V V ++ LV P I QA+A+H IT+ MV Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMV 68 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 A P + + VAHNA FD L E G+ + +++L + Sbjct: 69 AGAPSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTT 128 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 +P + N+ + ++T G++ HRA D T +L ++ + Sbjct: 129 FPNLPSYNLQSLRAY-FQLETEKGMNAHRAGADVEWTRQVLEIALSKA 175 >UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola RepID=DPO3E_BUCBP Length = 245 Score = 166 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 33/229 (14%) Query: 3 RIIDTETCGLQG--------GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53 ++D ET G+ I+EI +V++I+ ++P+R I Q+ IH I Sbjct: 8 IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67 Query: 54 TEAMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWI 97 T+ + DKP ++ Y + + HNA FD + + Sbjct: 68 TDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCNVV 127 Query: 98 CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157 T+ LAR+L+PG K S AL K+NV H AL D + A + + + Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVSHR---DFHSALIDAKLLAKVYTFMTSFQQSI 184 Query: 158 A-----EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201 + + I L + F A D ++ YL+++ Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYVKQE 233 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 166 bits (421), Expect = 5e-40, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 21/191 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56 + DTET GL IVE+A+ V++G+I++ V P RPI + IH + +A Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332 Query: 57 MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105 VA P IE VIP + S VAHNA FD +L + + T+ L+ Sbjct: 333 DVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSAL 392 Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMAD 163 ++ +S AL + + P H H A D TA LI ++ G E Sbjct: 393 VFGISADHSLDALCSRLSIEI---PARHRHTAKGDARATAEALIRLLPLLQGKGIETFGQ 449 Query: 164 ITGRPSLMTTF 174 + S Sbjct: 450 LLKETSKFGRL 460 >UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales RepID=A1ARI3_PELPD Length = 170 Score = 166 bits (421), Expect = 5e-40, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%) Query: 2 LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 L ++D ET GL ++E+A+V + +GK+V + L+R + I P A +H I M Sbjct: 5 LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106 + P EDV + G VAHNA FD + + ICT+++ARR Sbjct: 65 LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 +P + + L P HRAL D + A + + + Sbjct: 125 FPELASHRLEALARHLLG-SIPEDCRLHRALGDARLAARVWLAM 167 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 166 bits (421), Expect = 6e-40, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 23/189 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 DTET GL+ I+EI +V I+ S L+ PDR I P I+ IT+ M+ Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDML 74 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106 +KP ++ + VAHNA+FD L + + + T +A+ + Sbjct: 75 VNKPRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAV 134 Query: 107 WPGIKYS---NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 +PG+ L L V HRA D + L ++ + Sbjct: 135 FPGLGRHQYRLQNLALQFGLTVHA-----AHRAEDDARVCMELFTTMIAHHAKQNGHCVN 189 Query: 164 ITGRPSLMT 172 P++ Sbjct: 190 HAQSPTIKK 198 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 165 bits (420), Expect = 6e-40, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 17/162 (10%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET GL ++EIA+ + +IV+ V+P I + + IT V Sbjct: 47 VIVLDTETTGLSHRDSELIEIAAARLRGREIVDRFDTFVKPSGLIPEEITKLTSITNVDV 106 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE------WICTMKLARRLWPG 109 A P D + + G VAHNA+FDR + ++PG WI ++ L+R P Sbjct: 107 AHAPSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSDIWIDSLALSRIALPR 166 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + +A+ HRA D + ++ Sbjct: 167 LASHKLAVMAEL-----FGCESVSHRANADVEALCGVWRILL 203 >UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia RepID=B3CMS2_WOLPP Length = 234 Score = 165 bits (420), Expect = 7e-40, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 26/201 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET GL I+EI V++I+ + P+R I + IH I+E Sbjct: 8 IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67 Query: 58 VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104 + DKP DV + ++ V HNA FD + L G + T+ LAR Sbjct: 68 LEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLAR 127 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 + + G S AL K ++++ H AL D + A + +++ Q Sbjct: 128 KKFVGSPASLNALCKRFDISLEGREL---HGALVDAQLLAKVYVELTGGL-----QTFLF 179 Query: 165 TGRPSLMTTFTFGKYRGKAVS 185 + TF +++ + ++ Sbjct: 180 NNECAQDNNSTFIQHKVRNLA 200 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 165 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 24/189 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET G IVEI +V IDG+ + L+ P RPI P A A++ I++ MV Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMV 74 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106 KP I+ ++P + G + VAHNA FD + L G + ++ +AR++ Sbjct: 75 KGKPLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSLPIARKV 134 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ-----M 161 +PG+ + + P + HRA D + +M + + Sbjct: 135 FPGLPNYKLGTL----VQHLKIPTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190 Query: 162 ADITGRPSL 170 +TG+P L Sbjct: 191 IALTGKPEL 199 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 165 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 77/220 (35%), Gaps = 30/220 (13%) Query: 2 LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+EI ++ V DGK+ ++P ISP + I+ MV Sbjct: 39 YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 98 Query: 59 ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 A VI + + + HN FD I T+K+A+++ Sbjct: 99 ASARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMGIDTLKIAKKVH 158 Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P ++ S AL + K+ + HRA +D TA L + + + + Sbjct: 159 PELESKSLSALCEHYKIENKA-----AHRAYFDALATAKLYQTLSHYFEPDNPKTFKPSQ 213 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206 Y+ + + L L N + S Sbjct: 214 LT----------YKIRKPQPATPKQLALLERLTKNKKTFS 243 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 165 bits (419), Expect = 8e-40, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 22/161 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL IVEIA V + G++V+ + LV P R P +H IT M+ Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEML 94 Query: 59 ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRL 106 + P DV VAHNA F+ + + P +CT++LAR++ Sbjct: 95 SGAPTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQV 154 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147 + ++ + + H AL D TA LL Sbjct: 155 LAAPNFQLVSCCTVYGIELH-----DAHTALGDTRATAQLL 190 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%) Query: 2 LRIIDTE--TCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 ++D E + G + I+++ V + DG+IV+ + V P P+ + +T+ +A Sbjct: 8 YVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLA 67 Query: 60 DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108 P V +VAHN FD +L E+ + T++LA+ +P Sbjct: 68 QAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFP 127 Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163 + KYS L + + P H H AL D TA LL+ + + + + Sbjct: 128 ELEKYSLPILCRELGI-----PLKHAHTALSDAQATAELLLFLREKMAQLPKGLLE 178 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 165 bits (419), Expect = 9e-40, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 23/216 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL I+++++V + +G +++ + P P+S Q + + IT+ +V Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTGITDDLV 469 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMKLARR 105 + +V+ +Y HN FD LP++ I T+ LAR Sbjct: 470 KNSKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARW 529 Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164 L+P +Y+ L K +N++ HHHRA+ D T LL + + + D Sbjct: 530 LYPNFGRYTLDFLSKKFSVNLE-----HHHRAIDDSTATGMLLHIFLKEAEENYGVVYDE 584 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 ++ + R +S + + G L+ L+ Sbjct: 585 QLNEHTDDHESWRQTRPTHLSILVKNQTG-LKNLYK 619 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 47/204 (23%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55 + D E GL I+ IA V V++G+++ ++ P RPI P ++ H IT+ Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568 Query: 56 AMVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWI------- 97 V DKP IE V+P + G VAHNA+FD + + + Sbjct: 569 DDVQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTLLLSA 628 Query: 98 ----CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153 +S AL + + H AL D TA LL+ I+ Sbjct: 629 LLDGD----------EEDHSLDALCDRYGIAITG-----RHTALGDTLATAELLVRIIER 673 Query: 154 SG----WTAEQMADITGRPSLMTT 173 T ++ + + + Sbjct: 674 LEAQGYQTFGEVMKASRMAAELRH 697 >UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18 RepID=C6MPJ2_9DELT Length = 835 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 25/182 (13%) Query: 2 LRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITE 55 + DTET GLQ +V I++V + GK+ + LV P R I ++ A HRI + Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIED 700 Query: 56 AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM---------PGEWICTMKLA 103 MVAD P + +V P + G VAHNA+FD++ L + T+ L+ Sbjct: 701 HMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTLFLS 760 Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQM 161 L G + +S A+ + + ++ H +L D TA + + +++ G + Sbjct: 761 VGLHSGTEGHSLDAMAQRMGIAIEG-----RHTSLGDARATAQIFLGLLSLLPGRGVRTL 815 Query: 162 AD 163 A+ Sbjct: 816 AE 817 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 24/218 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + D ET GL I+E + +++GK+++ + V+P++ IS + I I V Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFFVKPNKEISEKITLITGIKNQDV 459 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106 + ++ + + G VAHNA+FD + E ++ I T+ +++ + Sbjct: 460 ENAISEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQIIDTLVVSKII 519 Query: 107 WPGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL-IDIMNTSGWTAEQMADI 164 P K S L + HRA YD + A + + I S + DI Sbjct: 520 EPEAKKFSLENLASRSGIIYN---STEAHRADYDADVLAKVWNLYIQKLSDMNVKYFDDI 576 Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNL 202 + + K R ++ +A+ G L+ LF + Sbjct: 577 YN---FKSNIIYEKTRPFEITILAKNQSG-LKELFQKI 610 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 29/213 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 D ET GL I+EI +V + DGKI + ++ P+ +S + + I+ M+ Sbjct: 4 YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGKYNCIIHPEIEVSDFIINLTGISRDML 63 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107 +++ + + G + HN FD + + + T+K+AR+L Sbjct: 64 RKGIPLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVDTLKVARKLL 123 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 G++ + HRA D TA + + T E++ Sbjct: 124 TGLENKKLETLCAHY----HYVNQAAHRAYDDALATAVVFEQMKKEFP-TEEEIFQ---- 174 Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200 F + + + + YL L Sbjct: 175 ---PQQLQFKVKKERPAT---AKQKKYLENLMK 201 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56 + DTET GL + IV+I +V V++G+++ ++ LV P RPI + +H ++ A Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336 Query: 57 MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105 MV P I + + VAHNA FD L + T+ L+ Sbjct: 337 MVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAV 396 Query: 106 LW-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMAD 163 L+ + ++ AL + + + P H AL D TA L+ ++ + Sbjct: 397 LFGASVPHTLDALCERLDITI---PPALRHTALGDAQATACALVQMIPMLQARGFNSLLQ 453 Query: 164 ITGRPSLMTTF 174 + + Sbjct: 454 VIEQTQRHGRL 464 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 164 bits (417), Expect = 1e-39, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 94/273 (34%), Gaps = 61/273 (22%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L I D ET GL I++I+ + V S V P++PI P + IT+ MV Sbjct: 9 LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68 Query: 59 ADKPWIEDV---IPHYYGSEWYVAHNA-SFDRRVLPEMPGEWI-------CTMKLARRLW 107 D P + + + + + N+ FD +L E C + A+ ++ Sbjct: 69 KDAPTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQNIF 128 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-------------- 153 ++ N+A + HRA D T +L ++ Sbjct: 129 HKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEKTLA 188 Query: 154 ---------------------------SGWTAEQMADITGRPSLMTTFTFGKYRGKAVSD 186 + + D G+P L F F KY+G AV+D Sbjct: 189 NDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWAVAD 248 Query: 187 VAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219 V RDPG+ W+ +S + L K L Sbjct: 249 VVHRDPGFCNWI------LSSDFPLNTKQVLTR 275 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G+ I+E +V V+D K V+ LV P R ++P + IT M+ Sbjct: 11 YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQLVNPMRNLNPFITQLTGITPDML 70 Query: 59 ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLP---------EMPGEWICTMKLARR 105 P ++ V+P + G + + HN FD + + +P I T++++R Sbjct: 71 EPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQMSRS 130 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 ++P + L + + + HRAL D T + + Sbjct: 131 MYPQYNRHRLVDLIQRFDIA-----DVEEHRALSDAEQTQMCFEYMRDEQRR 177 >UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIX0_KOSOT Length = 185 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%) Query: 1 MLRIIDTETCGLQ----GGIVEIASVDVIDGKI-VN-PMSHLVRPDRPISPQAMAIHRIT 54 + +IDTET G I+EIA++ + GK+ V+ LV P I IH + Sbjct: 4 VYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLK 63 Query: 55 EAMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKL 102 V +P I DV P + G+ V H+ D + + ++I T+K+ Sbjct: 64 NEDVTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKI 123 Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156 A+ L+ YS L K K+ HRAL D +T + + ++ G Sbjct: 124 AKDLFKEGSYSLAELAKRLKIK-----DAPTHRALDDARVTGKVFLAMVKKLGG 172 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 14/163 (8%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET GL IVE+ V V DGK LVRP RP+ + ++ + +A + Sbjct: 5 FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64 Query: 59 ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIK 111 A++P +V P + G+E V H+ FD L G + T+ LAR + PG+ Sbjct: 65 AERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLP 124 Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154 + L P HRA+ D A L ++ Sbjct: 125 SYRLELLCAH----LDLPERPGHRAMEDARAAAGLFTALLERF 163 >UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2X6_9AQUI Length = 206 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57 IID ET GL ++E+A++ G I++ + HL +P I + + + IT AM Sbjct: 12 FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAM 71 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V DKP+ ED+ P + VAHNA FD L + +ICT LARR Sbjct: 72 VIDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARR 131 Query: 106 LWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 ++P K S +L +N + HRAL D T ++ Sbjct: 132 IFPEIQKKSLSSLTNYLGINFKQK-----HRALSDAQATLQAFQTMLE 174 >UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax=Campylobacter RepID=A7GZ66_CAMC5 Length = 273 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 21/191 (10%) Query: 2 LRIIDTETCG--LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET G G I+EI ++ + +G + V + + I+++ + Sbjct: 76 FCIVDIETSGGITSGQIIEIGALKIKNGVEIGRFESFVDAPF-VPENITQLTGISQSDLT 134 Query: 60 DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107 P ++ V+ + G+ +VAHN +FD + + + +CT+ L+RR Sbjct: 135 GAPSLKSVLERFKIFLGTSVFVAHNVNFDYGFISQSLSNIGLGMLLNRKLCTIDLSRRTI 194 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 KY +L + +N HHRAL D +L ++ ++ + + D+ Sbjct: 195 ASQKYGLGSLKELLGINNT------HHRALNDAIAATEILKICISRLPFSIQSVEDLINF 248 Query: 168 PSLMTTFTFGK 178 + Sbjct: 249 SKTAPSMKLKP 259 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 26/189 (13%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-----ISPQAMAIHRI 53 ++D ET GL I+EI +++V GK S L++P P +SP + I Sbjct: 25 YVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTGI 84 Query: 54 TEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMK 101 T M+A P + + GS V +N FD L + +W+ + Sbjct: 85 TNEMLAAAPQPRQALEAFGKFLGSRVAVGYNVGFDMGFLQQQFQDQLYRPLANDWVDVLP 144 Query: 102 LARRLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 +A+ L+P + + L + + HRAL D T + +G Sbjct: 145 MAQTLFPLWDHHRLNNLAAWYHVENK-----EAHRALSDVETTETCFRKLKEDAGRQYPS 199 Query: 161 MADITGRPS 169 + D + Sbjct: 200 LEDFLEKVR 208 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%) Query: 3 RIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRP-DRPISPQAMAIHRITEAM 57 + DTET GL+ ++EI V++++ + P R + P A+A+H I+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63 Query: 58 VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLAR 104 + DKP +++ + VAHNA FD + + T+ LAR Sbjct: 64 LLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALAR 123 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 R P S AL K ++ H AL D I A + I+++ Sbjct: 124 RKHPIGPNSLDALCKRYGIDNSHRTL---HGALLDAQILAEVYIELI 167 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + ++DTET GL ++EI++ + +I+ V P PI + + IT+ V Sbjct: 19 IVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDV 78 Query: 59 ADKPWIED---VIPHYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPG 109 P ++ + + G +AHNA+FDR + +PG WI T+ L+R P Sbjct: 79 KGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPR 138 Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + ++ + HRA D + ++ Sbjct: 139 LSSHKLS-----SMAEAFGTMKVTHRASDDVDALCGMWRILL 175 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%) Query: 3 RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59 I+D ET GL I+EI ++ V G+IV+ LVRP+RPI + + +++A VA Sbjct: 4 IIVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVA 63 Query: 60 DKPWIEDVIPH---YYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107 P + + + G H+ F+R LP PG+ +CT+ LAR L Sbjct: 64 GAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILA 123 Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD-IT 165 P + + L + +L + HRAL D LL+ + + + + + Sbjct: 124 PRLMSHRLEYLARRLRLRAEVS-----HRALADARTAHQLLMRLEEKARRLPSGVIELLA 178 Query: 166 GRPSLMTTFTFG-------KYRGKAVSDVAERDPGY 194 G L + T G ++ + ER Y Sbjct: 179 GLAGLYSPLTAGWFEQVLSRHEEHQGPPLEERQGLY 214 >UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L7K7_STAHJ Length = 219 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 19/179 (10%) Query: 2 LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 +D ET G + I + V V++ +IV LV P S + +H IT V D Sbjct: 41 FIALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVID 100 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108 P E V P + VAHNA+FD VL + + + C+ +LA+R Sbjct: 101 APSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTID 160 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167 +Y L K KL+ HH AL D A + ++ + M I G+ Sbjct: 161 AYRYGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHY-DNLQSMLQIYGK 213 >UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLS9_9NEIS Length = 464 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 23/199 (11%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 + I+D ET G I E+A + GKI LV+P+ PIS + I++ M+ Sbjct: 24 VVILDLETTGGHFYADRITELAFLHFWQGKITAV-QQLVQPNMPISGFVRDLTGISDEML 82 Query: 59 ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107 +P P +AHN+ FD L +C+++L+R+L+ Sbjct: 83 QGQPTFAQFAPQVLPLLRGSLLIAHNSRFDYTFLRHECRRNGFAFATAGLCSVQLSRKLY 142 Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA--EQMADI 164 P K++ ++ + L V + HRA+ D A L + G + M + Sbjct: 143 PEFFKHNLDSIIERHGLAVAS-----RHRAMSDVLAVAEYLQLALREKGAPLLGQLMRQL 197 Query: 165 TGRPSLMTTFTFGKYRGKA 183 P L G ++ + Sbjct: 198 ANPPMLPANLPAGVFQAAS 216 >UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter RepID=Q16CY8_ROSDO Length = 228 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 21/167 (12%) Query: 3 RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G IVEI +V+++ + P+R + +A +H + + Sbjct: 4 IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104 + DKP +V + G V HNA+FD + L G + I T+ +AR Sbjct: 64 LRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAIDTLDIAR 123 Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151 + +PG S AL + ++ + H AL D I A + ++++ Sbjct: 124 KRFPGSPASLDALCRRFGIDNTSRTL---HGALLDSEILAEVYLELI 167 >UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8CUQ0_OCEIH Length = 195 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (10%) Query: 2 LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 ID ET + + V + D +I++ L+ P + IH ITE V + Sbjct: 4 FAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQE 63 Query: 61 KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108 P ++ P Y +AHNASFD VL + ++ +CT+K++R +WP Sbjct: 64 APTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRLIWP 123 Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163 ++ + + L+HH A+ D +A + + + T E+ + Sbjct: 124 QLENHKL-----HTVANHHGIALNHHHAMDDARASAKIFLASLAEQKIGTTEEFIE 174 >UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2L6_SALRD Length = 538 Score = 163 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 26/199 (13%) Query: 18 EIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YYGS 74 EI +V V DG +V+ LV P + + + + IT MV + P ++V+P + G Sbjct: 2 EIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLGD 61 Query: 75 EWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPGIKYSNMA-LYKTRKLN 124 VAHN SFD L +P E +CT++LARRL PG+ ++ L + ++ Sbjct: 62 GILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDID 121 Query: 125 VQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMADITGRPSLMTTFTFG-- 177 V+ HRAL D T+ +L + T E + + G Sbjct: 122 VEG-----RHRALGDAEATSVVLRRFVSQLAFEHEVETVEALLRFQHQSYQTVREVPGHI 176 Query: 178 -KYRGKAVSDVAERDPGYL 195 R + + DV + Y+ Sbjct: 177 ESIRDEVLPDVPDEPGVYV 195 >UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0M1_HALNC Length = 481 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 30/236 (12%) Query: 2 LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 L +D ET G + I EI V + + S L+ P I + + IT MV Sbjct: 21 LACLDIETTGSHTERDRITEIGIVTLHPDGTQSNWSCLIHPGCAIPARITTLTGITNEMV 80 Query: 59 ADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107 AD+P + + +AHNA FD L + +C++KL+R+++ Sbjct: 81 ADQPVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNPSVLCSVKLSRQMF 140 Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + ++ + L+ HRAL D + A + + T AE++ Sbjct: 141 PAERRHNLDSVMQRMGLSCAA-----RHRALGDAAVVADFITTLACTR---AEELLAACR 192 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL---KHYLEN 219 + + + ++ + YL + ++ + ++ + L++ Sbjct: 193 AQRQRPSLPPHLAPER-IDEIPDTPGVYLMY---GDGALPLYIGKSIHLRRRVLDH 244 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 21/210 (10%) Query: 2 LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 I D ET GL IVE +V + +G + ++P I P I I++ M+ Sbjct: 411 FVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQKMI 470 Query: 59 -ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105 E + I VAHNA+FD L + I T++++R Sbjct: 471 DETAISWEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRF 530 Query: 106 LWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163 L P K + K ++ HRA YD I + + + + Sbjct: 531 LNPNEKSHSLKNVAKRYEIEYDEEI---AHRADYDAKILTTIWKNFLAELKSQNINDLTS 587 Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193 ++ + + K K ++ +A+ G Sbjct: 588 LSEIKNSIFELRPEKVFPKQLTIIAKNQIG 617 >UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria RepID=Q48KX3_PSE14 Length = 259 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 30/228 (13%) Query: 3 RIIDTETCGL----QGGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57 ++DTET G+ I+EI V++I ++ ++PDR A+ +H IT Sbjct: 11 IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70 Query: 58 VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM--------------PGEWICTM 100 + KP +V + + HNA+FD + + T+ Sbjct: 71 LVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSILDTL 130 Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160 +AR PG + S AL K ++ H AL D I A + + + T G T+ Sbjct: 131 MMARERHPGQRNSLDALCKRYGVDNSGREL---HGALLDSEILADVYLAM--TGGQTSLS 185 Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208 +A + + RG + + R + + ++ Sbjct: 186 LAGNASDGNGSGEGSGN--RGSEIRRLPADRKP-CRIIRASESELAEH 230 >UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria RepID=A6Q1S7_NITSB Length = 276 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 21/206 (10%) Query: 2 LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58 ++D ET G + ++EI ++ I++ + + + + I + + Sbjct: 70 FVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIYAE-DVPEYISKLTGILQEDL 128 Query: 59 ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106 + P ++V+ + +VAHN FD L ++ +C++ LAR+ Sbjct: 129 ENAPSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKLEQLGLEKLANRKLCSIDLARKT 188 Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 +Y L +T +N HRA D +L + D+ Sbjct: 189 IESERYGLEFLNETLGINTAVS-----HRAYADALTAYKILQMSFEKLPNEVKSTEDLIK 243 Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDP 192 K + S + + DP Sbjct: 244 FSKSAKRKKVKKTTKLSESTLPQADP 269 >UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM Length = 178 Score = 162 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 21/179 (11%) Query: 2 LRIIDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60 + D ET I I V +GKI LV P+ + + I++A V D Sbjct: 4 FIVFDVETPNRKNNRISAIGITVVEEGKISKEFYSLVNPETNFDYFNVKLTGISKASVKD 63 Query: 61 KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARRLW 107 P ++ + VAHNASFD VL + ++CT+K+ R L+ Sbjct: 64 APTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTVKMGRSLF 123 Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166 P + + + +++ HHRA D + A +L+ + +G + Sbjct: 124 PDRSHKLNMVCEDFGISL------QHHRADSDSHACAEILLRYLE-AGAEVKDFIRTCS 175 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 162 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 23/169 (13%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEA 56 +DTET GL IVEIA+V+V + + + P R A+ +H ++ Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSRE 62 Query: 57 MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG------------EWICTMK 101 + DKP +++ + + HNA FD + G + + T+ Sbjct: 63 FLQDKPAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQIVDTLM 122 Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150 LA+ L PG + + AL + +++ H AL D + A + + + Sbjct: 123 LAKELHPGKRNNLDALCERYQIDNAHRTL---HGALLDAELLAEVYLAM 168 >UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7J6_HYDS0 Length = 196 Score = 162 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 21/168 (12%) Query: 1 MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 + ++D ET GL I+EI + V +I L+ P I + I IT AM Sbjct: 11 IYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAM 70 Query: 58 VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 + +P +E +I + V HN FD L ++ ICT++L+++ Sbjct: 71 LVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLELSKK 130 Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152 L P +K + A+ + + HRA D +T + +M+ Sbjct: 131 LIPNLKSYKLSAVADYFNIKYERL-----HRAKDDALLTYNIFNKLMD 173 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 20/174 (11%) Query: 2 LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57 ++D E G +++ + V KIVN S L+ P R I + IT+ Sbjct: 40 YAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIVNTFSTLINPLRKIPEDVQNLTNITDKD 99 Query: 58 VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105 V P ++V I +VAHN D R L P++ E I T++LA+ Sbjct: 100 VKSAPTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLDLEGIDTVQLAQI 159 Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159 +P + + H H A D ++TA L I + E Sbjct: 160 AFPTLASYRLGDLAHF----LGFKHKHPHHADSDAFVTAELFILLQKKLASMPE 209 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.178 0.584 Lambda K H 0.267 0.0543 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,682,410,655 Number of Sequences: 3077464 Number of extensions: 91934143 Number of successful extensions: 211463 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1420 Number of HSP's successfully gapped in prelim test: 2112 Number of HSP's that attempted gapping in prelim test: 201028 Number of HSP's gapped (non-prelim): 3900 length of query: 220 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 96 effective length of database: 658,790,820 effective search space: 63243918720 effective search space used: 63243918720 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 91 (39.3 bits)