Phyre 2 Results for P0AEK0

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Email | l.a.kelley@imperial.ac.uk
Description | P0AEK0
Date | Thu Jan 5 11:23:32 GMT 2012
Unique Job ID | c02656c0030affd4

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1y97a1
Top template information
Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
Confidence and coverage
Confidence: | 100.0% | Coverage: | 66%
145 residues ( 66% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | R | I | I | D | T | E | T | C | G | L | Q | G | G | I | V | E | I | A | S | V | D | V | I | D | G | K | I | V | N | P | M | S | H | L | V | R | P | D | R | P | I | S | P | Q | A | M | A | I | H | R | I | T | E | A | M | V | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | K | P | W | I | E | D | V | I | P | H | Y | Y | G | S | E | W | Y | V | A | H | N | A | S | F | D | R | R | V | L | P | E | M | P | G | E | W | I | C | T | M | K | L | A | R | R | L | W | P | G | I | K | Y | S | N | M | A | L | Y | K | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | K | L | N | V | Q | T | P | P | G | L | H | H | H | R | A | L | Y | D | C | Y | I | T | A | A | L | L | I | D | I | M | N | T | S | G | W | T | A | E | Q | M | A | D | I | T | G | R | P | S | L | M | T | T | F | T | F | G | K | Y | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220
Sequence |  | G | K | A | V | S | D | V | A | E | R | D | P | G | Y | L | R | W | L | F | N | N | L | D | S | M | S | P | E | L | R | L | T | L | K | H | Y | L | E | N | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1y97a1 |

### PDB 1y97 chain A domain 1

Region: 2 - 153
Aligned: 145
Modelled: 152
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
2 |
| d2qxfa1 |

### PDB 2qxf chain A domain 1

Region: 2 - 180
Aligned: 172
Modelled: 172
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
3 |
| c3u6fA_ |

### PDB 3u6f chain A

Region: 2 - 153
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant

Phyre2
4 |
| c1zbhA_ |

### PDB 1zbh chain A

Region: 2 - 153
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease

Phyre2
5 |
| c1zbuB_ |

### PDB 1zbu chain B

Region: 2 - 153
Aligned: 149
Modelled: 148
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease

Phyre2
6 |
| d2guia1 |

### PDB 2gui chain A domain 1

Region: 2 - 150
Aligned: 146
Modelled: 149
Confidence: 100.0%
Identity: 30%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
7 |
| c2p1jB_ |

### PDB 2p1j chain B

Region: 2 - 156
Aligned: 150
Modelled: 155
Confidence: 100.0%
Identity: 34%
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima

Phyre2
8 |
| c3cm6A_ |

### PDB 3cm6 chain A

Region: 2 - 156
Aligned: 155
Modelled: 155
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er

Phyre2
9 |
| d3b6oa1 |

### PDB 3b6o chain A domain 1

Region: 2 - 153
Aligned: 148
Modelled: 152
Confidence: 100.0%
Identity: 16%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
10 |
| d1wlja_ |

### PDB 1wlj chain A

Region: 2 - 152
Aligned: 148
Modelled: 151
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
11 |
| d1j9aa_ |

### PDB 1j9a chain A

Region: 2 - 156
Aligned: 144
Modelled: 153
Confidence: 100.0%
Identity: 17%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
12 |
| c3tr8A_ |

### PDB 3tr8 chain A

Region: 2 - 153
Aligned: 141
Modelled: 141
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii

Phyre2
13 |
| d1w0ha_ |

### PDB 1w0h chain A

Region: 2 - 156
Aligned: 152
Modelled: 155
Confidence: 100.0%
Identity: 16%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
14 |
| c2xriA_ |

### PDB 2xri chain A

Region: 2 - 153
Aligned: 149
Modelled: 152
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3

Phyre2
15 |
| d2f96a1 |

### PDB 2f96 chain A domain 1

Region: 1 - 153
Aligned: 151
Modelled: 152
Confidence: 100.0%
Identity: 22%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
16 |
| d2igia1 |

### PDB 2igi chain A domain 1

Region: 2 - 156
Aligned: 144
Modelled: 155
Confidence: 100.0%
Identity: 19%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
17 |
| c2gbzA_ |

### PDB 2gbz chain A

Region: 2 - 152
Aligned: 140
Modelled: 140
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix

Phyre2
18 |
| c2is3B_ |

### PDB 2is3 chain B

Region: 3 - 153
Aligned: 131
Modelled: 138
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t

Phyre2
19 |
| d1uoca_ |

### PDB 1uoc chain A

Region: 2 - 152
Aligned: 148
Modelled: 151
Confidence: 99.4%
Identity: 9%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: CAF1-like ribonuclease

Phyre2
20 |
| d1kfsa1 |

### PDB 1kfs chain A domain 1

Region: 2 - 156
Aligned: 141
Modelled: 141
Confidence: 99.1%
Identity: 19%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1y97a1 |
|  | 100.0 | 20 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
2 | d2qxfa1 |
|  | 100.0 | 20 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
3 | c3u6fA_ |
|  | 100.0 | 18 | PDB header:hydrolase/dna Chain: A: PDB Molecule:three prime repair exonuclease 1; PDBTitle: mouse trex1 d200n mutant
4 | c1zbhA_ |
|  | 100.0 | 17 | PDB header:hydrolase/rna Chain: A: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
5 | c1zbuB_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:3'-5' exonuclease eri1; PDBTitle: crystal structure of full-length 3'-exonuclease
6 | d2guia1 |
|  | 100.0 | 30 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
7 | c2p1jB_ |
|  | 100.0 | 34 | PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii polc-type; PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima
8 | c3cm6A_ |
|  | 100.0 | 17 | PDB header:hydrolase, apoptosis Chain: A: PDB Molecule:cell death-related nuclease 4; PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
9 | d3b6oa1 |
|  | 100.0 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
10 | d1wlja_ |
|  | 100.0 | 20 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
11 | d1j9aa_ |
|  | 100.0 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
12 | c3tr8A_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
13 | d1w0ha_ |
|  | 100.0 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
14 | c2xriA_ |
|  | 100.0 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:eri1 exoribonuclease 3; PDBTitle: crystal structure of human eri1 exoribonuclease 3
15 | d2f96a1 |
|  | 100.0 | 22 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
16 | d2igia1 |
|  | 100.0 | 19 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
17 | c2gbzA_ |
|  | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:oligoribonuclease; PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
18 | c2is3B_ |
|  | 99.9 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease t; PDBTitle: crystal structure of escherichia coli rnase t
19 | d1uoca_ |
|  | 99.4 | 9 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease
20 | d1kfsa1 |
|  | 99.1 | 19 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
21 | d2d5ra1 |
| not modelled | 99.1 | 12 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:CAF1-like ribonuclease
22 | d1x9ma1 |
| not modelled | 99.1 | 20 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
23 | c2p51A_ |
| not modelled | 99.0 | 15 | PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit
24 | c2kzzA_ |
| not modelled | 99.0 | 18 | PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: klenow fragment with normal substrate and zinc only
25 | c1tk0A_ |
| not modelled | 98.8 | 20 | PDB header:transferase/electron transport/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site
26 | c1njzA_ |
| not modelled | 98.8 | 14 | PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site
27 | c3d45B_ |
| not modelled | 98.6 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of mouse parn in complex with m7gpppg
28 | d2hhva1 |
| not modelled | 98.5 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
29 | c2a1sC_ |
| not modelled | 98.5 | 23 | PDB header:hydrolase Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn; PDBTitle: crystal structure of native parn nuclease domain
30 | d1d5aa1 |
| not modelled | 98.0 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
31 | d1wn7a1 |
| not modelled | 97.9 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
32 | c2gv9B_ |
| not modelled | 97.9 | 12 | PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
33 | d1qhta1 |
| not modelled | 97.9 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
34 | c1yt3A_ |
| not modelled | 97.7 | 22 | PDB header:hydrolase,translation Chain: A: PDB Molecule:ribonuclease d; PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
35 | d1tgoa1 |
| not modelled | 97.7 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
36 | d1noya_ |
| not modelled | 97.6 | 16 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
37 | d1q8ia1 |
| not modelled | 97.5 | 18 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
38 | c3iayA_ |
| not modelled | 97.5 | 21 | PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta
39 | d1ih7a1 |
| not modelled | 97.3 | 20 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
40 | c2e6mA_ |
| not modelled | 97.3 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog; PDBTitle: structure of mouse werner exonuclease domain
41 | c2dtuA_ |
| not modelled | 97.2 | 18 | PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog
42 | c1d5aA_ |
| not modelled | 97.1 | 16 | PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase); PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
43 | c3cymA_ |
| not modelled | 97.1 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bad_0989; PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
44 | c2vwkA_ |
| not modelled | 97.0 | 18 | PDB header:dna replication Chain: A: PDB Molecule:dna polymerase; PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
45 | d1yt3a3 |
| not modelled | 96.9 | 21 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
46 | c1q8iA_ |
| not modelled | 96.6 | 20 | PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii; PDBTitle: crystal structure of escherichia coli dna polymerase ii
47 | d1s5ja1 |
| not modelled | 96.4 | 15 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
48 | c4ktqA_ |
| not modelled | 96.4 | 16 | PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
49 | d2hbka2 |
| not modelled | 94.6 | 15 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
50 | d1vk0a_ |
| not modelled | 93.0 | 17 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
51 | c1s5jA_ |
| not modelled | 92.1 | 16 | PDB header:transferase Chain: A: PDB Molecule:dna polymerase i; PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
52 | c3ikmD_ |
| not modelled | 91.9 | 18 | PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
53 | c2hbkA_ |
| not modelled | 85.4 | 20 | PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
54 | c3mx2A_ |
| not modelled | 68.9 | 20 | PDB header:nuclear protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: lassa fever virus nucleoprotein complexed with dttp
55 | c3q7cA_ |
| not modelled | 68.4 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:nucleoprotein; PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese
56 | c1cmwA_ |
| not modelled | 64.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain
57 | c3sahA_ |
| not modelled | 49.5 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:exosome component 10; PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
58 | d2py5a1 |
| not modelled | 17.8 | 19 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease
59 | c1lj2B_ |
| not modelled | 9.4 | 13 | PDB header:viral protein/ translation Chain: B: PDB Molecule:nonstructural rna-binding protein 34; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
60 | c3eukC_ |
| not modelled | 5.4 | 14 | PDB header:cell cycle Chain: C: PDB Molecule:chromosome partition protein mukb, linker; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer
61 | c3g6iA_ |
| not modelled | 5.3 | 18 | PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0