BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (220 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria...   461   e-128
UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ...   279   4e-74
UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente...   210   4e-53
UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic...   114   3e-24
UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp....   108   1e-22
UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae...   107   3e-22
UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 T...    96   1e-18
UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 T...    94   4e-18
UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L...    94   5e-18
UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo...    82   2e-14
UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog...    80   3e-14
UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do...    80   6e-14
UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod...    79   7e-14
UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T...    79   8e-14
UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte...    79   8e-14
UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi...    78   3e-13
UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac...    77   3e-13
UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot...    77   5e-13
UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte...    77   6e-13
UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 T...    76   6e-13
UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp....    75   1e-12
UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein...    75   1e-12
UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop...    75   2e-12
UniRef50_B0V610 Putative DNA exonuclease X n=2 Tax=Acinetobacter...    75   2e-12
UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn...    75   2e-12
UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd...    74   3e-12
UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=...    74   4e-12
UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom...    74   4e-12
UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc...    74   5e-12
UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51...    74   5e-12
UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor...    74   5e-12
UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit...    74   5e-12
UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acin...    73   6e-12
UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri...    73   7e-12
UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive...    73   9e-12
UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov...    72   9e-12
UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam...    72   1e-11
UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri...    72   2e-11
UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro...    72   2e-11
UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti...    72   2e-11
UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy...    72   2e-11
UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme...    71   3e-11
UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof...    71   3e-11
UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID...    70   4e-11
UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS...    70   5e-11
UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma...    70   6e-11
UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ...    70   7e-11
UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr...    70   7e-11
UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exo...    69   1e-10
UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinet...    69   2e-10
UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo...    69   2e-10
UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich...    68   2e-10
UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7...    68   2e-10
UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg...    68   2e-10
UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom...    68   3e-10
UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis ...    67   3e-10
UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 T...    67   4e-10
UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro...    67   4e-10
UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A...    67   4e-10
UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit...    67   5e-10
UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia...    67   6e-10
UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon...    66   7e-10
UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia...    66   7e-10
UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege...    66   7e-10
UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif...    66   8e-10
UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi...    66   8e-10
UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon...    65   1e-09
UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu...    65   1e-09
UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult...    65   2e-09
UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=...    65   2e-09
UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte...    65   2e-09
UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte...    65   2e-09
UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor...    65   2e-09
UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau...    65   2e-09
UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth...    65   2e-09
UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos...    65   2e-09
UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen...    65   2e-09
UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul...    65   2e-09
UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para...    65   2e-09
UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord...    64   3e-09
UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti...    64   3e-09
UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip...    64   3e-09
UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ...    64   3e-09
UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev...    64   3e-09
UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Ther...    64   3e-09
UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr...    64   4e-09
UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax...    64   5e-09
UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep...    63   6e-09
UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginos...    63   7e-09
UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R...    63   7e-09
UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 T...    63   7e-09
UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' ex...    63   7e-09
UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep...    63   7e-09
UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam...    63   8e-09
UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill...    63   8e-09
UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand...    62   1e-08
UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac...    62   1e-08
UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit ...    62   1e-08
UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost...    62   1e-08
UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu...    62   1e-08
UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T...    62   2e-08
UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 T...    62   2e-08
UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto...    62   2e-08
UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob...    62   2e-08
UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact...    62   2e-08
UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili...    62   2e-08
UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick...    62   2e-08
UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=...    61   2e-08
UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu...    61   2e-08
UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT        61   2e-08
UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s...    61   2e-08
UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' ex...    61   3e-08
UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit...    61   3e-08
UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph...    61   3e-08
UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptospora...    61   3e-08
UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI...    61   3e-08
UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti...    61   3e-08
UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot...    61   3e-08
UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria Re...    61   3e-08
UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit...    61   3e-08
UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=...    61   3e-08
UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid...    61   3e-08
UniRef50_A1WP16 Exodeoxyribonuclease X n=4 Tax=Proteobacteria Re...    61   3e-08
UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob...    60   4e-08
UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot...    60   4e-08
UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri...    60   4e-08
UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri R...    60   5e-08
UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi...    60   5e-08
UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU...    60   5e-08
UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob...    60   6e-08
UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ...    60   6e-08
UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom...    60   6e-08
UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=...    60   6e-08
UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc...    60   7e-08
UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot...    60   7e-08
UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn...    60   8e-08
UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibr...    60   8e-08
UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive...    60   8e-08
UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Ta...    59   9e-08
UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida...    59   9e-08
UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothio...    59   1e-07
UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ...    59   1e-07
UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba...    59   1e-07
UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rh...    59   1e-07
UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi...    59   1e-07
UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete...    59   1e-07
UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 T...    59   1e-07
UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane...    59   1e-07
UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu...    59   1e-07
UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 T...    59   1e-07
UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=...    59   1e-07
UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte...    59   2e-07
UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit...    59   2e-07
UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax...    59   2e-07
UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudom...    58   2e-07
UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth...    58   2e-07
UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 T...    58   2e-07
UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi...    58   2e-07
UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ...    58   2e-07
UniRef50_B2HWM0 DNA polymerase III, epsilon subunit n=1 Tax=Acin...    58   2e-07
UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict...    58   2e-07
UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lact...    58   2e-07
UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl...    58   3e-07
UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib...    58   3e-07
UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero...    58   3e-07
UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau...    58   3e-07
UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur...    58   3e-07
UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo...    58   3e-07
UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS            57   3e-07
UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2     57   3e-07
UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella...    57   3e-07
UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept...    57   3e-07
UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dict...    57   3e-07
UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca...    57   4e-07
UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap...    57   4e-07
UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea...    57   4e-07
UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bact...    57   4e-07
UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ...    57   4e-07
UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 ...    57   4e-07
UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive...    57   4e-07
UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha c...    57   4e-07
UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl...    57   4e-07
UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit...    57   5e-07
UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob...    57   5e-07
UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T...    57   5e-07
UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross...    57   5e-07
UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=...    57   5e-07
UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi...    57   6e-07
UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep...    57   6e-07
UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri...    57   6e-07
UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alph...    57   6e-07
UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gam...    57   6e-07
UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu...    56   7e-07
UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh...    56   7e-07
UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Cand...    56   7e-07
UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco...    56   7e-07
UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte...    56   7e-07
UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm...    56   8e-07
UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D...    56   8e-07
UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon...    56   8e-07
UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida...    56   8e-07
UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm...    56   8e-07
UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero...    56   8e-07
UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re...    56   9e-07
UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para...    56   9e-07
UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellov...    56   9e-07
UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact...    56   9e-07
UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI...    56   1e-06
UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A...    56   1e-06
UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin...    56   1e-06
UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit...    56   1e-06
UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo...    56   1e-06
UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteo...    56   1e-06
UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo...    56   1e-06
UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulu...    56   1e-06
UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2...    55   1e-06
UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth...    55   1e-06
UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ...    55   1e-06
UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex...    55   1e-06
UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep...    55   1e-06
UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desu...    55   1e-06
UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin...    55   1e-06
UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau...    55   1e-06
UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb...    55   1e-06
UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact...    55   1e-06
UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1...    55   1e-06
UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related ...    55   1e-06
UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit...    55   1e-06
UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limno...    55   2e-06
UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 T...    55   2e-06
UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 T...    55   2e-06
UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7 T...    55   2e-06
UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=...    55   2e-06
UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri...    55   2e-06
UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost...    55   2e-06
UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidob...    55   2e-06
UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ...    55   2e-06
UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucl...    55   2e-06
UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop...    55   2e-06
UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto...    55   2e-06
UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacte...    54   3e-06
UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister i...    54   3e-06
UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid...    54   3e-06
UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphapr...    54   3e-06
UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herp...    54   3e-06
UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr...    54   3e-06
UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orienti...    54   3e-06
UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root R...    54   3e-06
UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri...    54   3e-06
UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran...    54   3e-06

>UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae
           RepID=EXOX_ECOL6
          Length = 220

 Score =  461 bits (1185), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD
Sbjct: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60

Query: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120
           KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120

Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180
           RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180

Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220
           GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220


>UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20
           Tax=Enterobacteriaceae RepID=A8GD51_SERP5
          Length = 222

 Score =  279 bits (714), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 163/218 (74%), Gaps = 2/218 (0%)

Query: 2   LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           LR+IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI  +AMAIH ITE MV  K
Sbjct: 3   LRVIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGK 62

Query: 62  PWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTR 121
           P I   I  Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N  L    
Sbjct: 63  PRIAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYAL 122

Query: 122 KLNVQTPPG--LHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKY 179
            L+VQ P    L+ HRALYDCY+TAALL  I+  SGWT EQMA IT +P L+  F FGKY
Sbjct: 123 NLDVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKY 182

Query: 180 RGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           RG+ +  VA+ DPGYLRW+  +++ +SP+++ TLK+YL
Sbjct: 183 RGQEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220


>UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae
           RepID=A4W6Y1_ENT38
          Length = 223

 Score =  210 bits (534), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 6/221 (2%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           MLR+IDTET GL+GG   +VE+ASVD++DG I NPMS LV+P   I  +AMAIH ITE M
Sbjct: 1   MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60

Query: 58  VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIK-YSNMA 116
           V   P + +VI  Y G++ YVAHNA FD+  LP++   WICT KLAR L P  K +SN  
Sbjct: 61  VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120

Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176
           L  +  L  + P GL+ HRALYDCY+TA LL+ +   + WT  +M  I+  PSL+    F
Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180

Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           GK++G + +++A+ +PGYLRWL  N D    ++  T  H+L
Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219


>UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWQ3_ALIAD
          Length = 240

 Score =  114 bits (284), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 119/230 (51%), Gaps = 22/230 (9%)

Query: 4   IIDTETCGL--QGGIVEIASVDVIDGKIVNPM---SHLVRPDRPISPQAMAIHRITEAMV 58
           ++DTET GL  +G +VE+A V+V  G    P    S LV P  PI P+A A+H IT+  V
Sbjct: 10  VVDTETTGLPPEGRVVELALVEV--GLECEPQIVYSALVDPGCPIPPEASAVHHITDRDV 67

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLW-PGIKYSN 114
           A KP +  V P    Y G    VAHNA FDR +LPE    WIC+ +LA+ LW    K+SN
Sbjct: 68  AGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKHSN 127

Query: 115 MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT---SGW--TAEQMADITGRPS 169
             L     ++V+       HRAL D  +TA +    +     +G+    +++      P 
Sbjct: 128 QVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAESPI 184

Query: 170 LMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
            + T  FGK++G  + +V      YL W   NL  +SP+LR +++  LE 
Sbjct: 185 EVQTMPFGKHKGMPLKEVPL---DYLDWALRNLQDLSPDLRWSMQRVLEQ 231


>UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B
           RepID=C9D3J4_9RHOB
          Length = 240

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 30/239 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDV-IDG-KIVNPMSHLVRPDRPISPQAMAIHRIT 54
           ++R+ID ET G Q      ++E   VDV +D   IVNP   L +P  PI P  MA+H IT
Sbjct: 8   IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67

Query: 55  EAMVADKPWIEDV-IPHYYG--SEWYV-AHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110
           +  VAD P    V  P + G  SE YV AHNA F++        +WICT K A  +WP  
Sbjct: 68  DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127

Query: 111 -KYSNMAL---------YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
             + N AL         + +   +   PP    HRAL D Y+TA +L++++     T E+
Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPP----HRALPDAYVTAHILLELLKHK--TPEE 181

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +  I+  P+L+TT  FGK++G   S   E    YL W+ N  D +  + + + +++L+ 
Sbjct: 182 LVQISEYPALLTTLRFGKHKGMKYS---EAPTDYLDWIVNKSD-LDEDTKFSSRYWLKK 236


>UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae RepID=Q0G0B0_9RHIZ
          Length = 266

 Score =  107 bits (267), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 23/216 (10%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDV--IDGKIVNPMSHLVRPDRP-ISPQAMAIHRIT 54
           ++R+IDTET GL   +  ++EI SVD+  + G I NPM     P    IS  A  +H+IT
Sbjct: 22  IVRVIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQIT 81

Query: 55  EAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSN 114
           + M+   P   D +   + +E Y A  A FDR  L  + G W+CT KLA R +P ++   
Sbjct: 82  DEMLVGAPPFSDAV-KPFNTETYAAQRADFDRSRL-RLTGRWLCTHKLALRAFPNVRAHG 139

Query: 115 M-ALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD------ 163
           + +L K   L++    Q   GLH HRAL+D   TA LL  I          ++D      
Sbjct: 140 LQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVLLRRIAEELTPHCHDLSDFLERAE 199

Query: 164 -ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
            ++  P+L+    FG+++G  + +V      YL+WL
Sbjct: 200 KVSNEPALLAKLRFGRHKGIPIREVPT---DYLQWL 232


>UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=A9HKJ8_GLUDA
          Length = 269

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 110/236 (46%), Gaps = 27/236 (11%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDVI---DGK---IVNPMSHLVRPDRPISPQAMAIH 51
            +R+ID ET G     GGIVEI   DV    DG       P + L  P  PI+PQ MAIH
Sbjct: 15  FVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIH 74

Query: 52  RITEAMVADKPWIEDVIPHYYG----SEWYVAHNASFD----RRVLPEMPG---EWICTM 100
            IT+A V D P   ++ P             AH ASF+    R  LP        WICT 
Sbjct: 75  HITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTY 134

Query: 101 KLARRLWPG-IKYSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           K A RLWP    +SN  L  +R+   ++   G   HRA  D Y+TA  L D++  +  T 
Sbjct: 135 KCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDMLALA--TV 192

Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
           EQ+   +  P+L+T    G  RG+ + ++A    G L  L        P+L  TL+
Sbjct: 193 EQLLRWSREPALLTRVPHGPLRGRQIRNLAT---GDLDRLLAEDRRRGPDLAFTLR 245


>UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3
           Tax=Alphaproteobacteria RepID=C6B6E1_RHILS
          Length = 262

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 100/203 (49%), Gaps = 28/203 (13%)

Query: 2   LRIIDTETCGLQ-GGIVEIASVDVIDGKI------VNPMSHLVRPDRPISPQAMAIHRIT 54
           +R++D ET G     + E+   DV+ G            S L+ P RPISP+ MAIH I 
Sbjct: 19  IRVVDLETAGNGLNDVCEVGWQDVVLGHDGGWQVDEERGSLLINPGRPISPETMAIHHIV 78

Query: 55  EAMVADKPWIEDVIPHYYGSEWYV----AHNASFDRR-VLPEMPG--EWICTMKLARRLW 107
           +A VA  P+ +++       E  V    AH ASF++R   P   G   WICT K A RLW
Sbjct: 79  DAEVATAPFWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTWKCALRLW 138

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHH------HRALYDCYITAALLIDIMNTSGWTAEQ 160
           P + ++SN  L   R      P GL H      HRA+ D Y+TA  L D++N S  T EQ
Sbjct: 139 PELPRFSNQMLRYLR-----MPEGLVHAIGLPAHRAMPDAYVTAHHLRDMLNES--TFEQ 191

Query: 161 MADITGRPSLMTTFTFGKYRGKA 183
           +   +  P L+     G  RGK+
Sbjct: 192 LVKWSSEPGLLPRVPSGPERGKS 214


>UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA
          Length = 293

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 29/240 (12%)

Query: 4   IIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+DTET G   +  I++++ + + +  +I      LV+P  PIS +AMA+H IT  MV D
Sbjct: 5   ILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMVED 64

Query: 61  KPWIEDVIPHYYGSEW------YVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGI 110
           KP I+    +    E        V HNA FD  +L +       + I T ++ + L P  
Sbjct: 65  KPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIPEG 124

Query: 111 KYS------NMALYKTRK-----LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
           K+S       + LYK  K      N+Q    ++ H AL D  +   L   ++       E
Sbjct: 125 KFSLQYNRYALGLYKKEKDICEKYNIQ----INAHDALGDVIVLGLLFEYLVTNFEKNVE 180

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           ++ ++T +P L   F  GKY+ + + DV  +DP Y+ ++  +L  + P+++ +++H+LEN
Sbjct: 181 ELVELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239


>UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ
           RepID=B3E5V5_GEOLS
          Length = 168

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 18/164 (10%)

Query: 4   IIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++DTET GL    QG ++EI +V V +G+I   ++ L+    PIS  A  +H I+E M+A
Sbjct: 6   VVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQMLA 65

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
            +P  ++V P    + G+   VAHNA+FDR  +          +   W CT++L+RR  P
Sbjct: 66  GRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRKLP 125

Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            +    +  +YK   L  + P  +  HRAL D  + A + ++++
Sbjct: 126 RLMNHKLETVYK--HLFGELPEEVQRHRALDDARMAARVWVELL 167


>UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp.
           128-5-R1-1 RepID=A8V2X6_9AQUI
          Length = 206

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 22/157 (14%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISP-QAMAIHRITEAMVA 59
           IID ET GL      ++E+A++    G I++ + HL +P     P + + +  IT AMV 
Sbjct: 14  IIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAMVI 73

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLW 107
           DKP+ ED+ P  Y        VAHNA FD   L E+            +ICT  LARR++
Sbjct: 74  DKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARRIF 133

Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYIT 143
           P I+  ++ +L     +N +       HRAL D   T
Sbjct: 134 PEIQKKSLSSLTNYLGINFKQK-----HRALSDAQAT 165


>UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1
           Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA
          Length = 754

 Score = 79.7 bits (195), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 18/160 (11%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           +ID ET GL       ++E+ +V+++DG+I      L  P  P+S +  AI  I+ AM+ 
Sbjct: 546 VIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAMLV 605

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---EMPGEW-----ICTMKLARRLWP 108
           D P + +VI     +      VAHNA FDRR L    E  G W     +CTM+L +R +P
Sbjct: 606 DAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRAYP 665

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           G+    +A +      V  P  +  HRAL D   TA L +
Sbjct: 666 GLGSYKLA-FLAEHAGVALPDAM--HRALADAMATAELFL 702


>UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MI24_RHOM4
          Length = 565

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 20/166 (12%)

Query: 4   IIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ++DTET G      I+E+A+V V  G+IV   + L+ P R + P    +  IT AM+  +
Sbjct: 10  VVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLVGR 69

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM--------PGE-WICTMKLARRLWPG 109
           P  ++V+P    + G    VAHN +FDR++L           PG   +CT++LARRL PG
Sbjct: 70  PSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLLPG 129

Query: 110 IKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +    +  L +  ++ V+     + HRAL D   TA +L+ ++  +
Sbjct: 130 LPAKGLDGLIRFYQIPVE-----NRHRALGDAEATAHVLLRLLEEA 170


>UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN
          Length = 234

 Score = 79.3 bits (194), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 25/235 (10%)

Query: 1   MLRIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ML  +D ET GL+ G  I  I  + V +  I +    LV   + IS +A +I+ IT  M+
Sbjct: 1   MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59

Query: 59  ADKPWIEDV----IPHYYG--SEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWP 108
            DKP  +D     I H     S   +AHN +FD ++L +      G+ + T+++ + L P
Sbjct: 60  KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119

Query: 109 G--------IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
                    ++Y  + LYK  +K   +    +  H AL D      L   ++       +
Sbjct: 120 ECEEFSLQFLRYE-LKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIK--EHD 176

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
           ++  ++ +  L+  F FGKY+G+ + +++  D GYL W+  ++  +  +LR +++
Sbjct: 177 ELVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIR 231


>UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z7T3_9FIRM
          Length = 237

 Score = 79.3 bits (194), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 28/208 (13%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G++     I+EI +V V DGK V+  S L+ P   +SP    +  IT+ M+ DK
Sbjct: 8   VDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEMLKDK 67

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110
           P+IE+V+P    + G +  + HN  FD   L +             I T+K+AR+   G+
Sbjct: 68  PFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTLKGL 127

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170
           +   +        N       +HHRA  D  +T+ L   +M   G         T  P L
Sbjct: 128 ESRGLEYL----CNYYGIADENHHRAFNDAEVTSKLYNVLMEKFG---------TESPGL 174

Query: 171 MTTFTFGKYRGKAVSDVAERDPGYLRWL 198
              +    ++ K +  + +R   YL+ L
Sbjct: 175 FEPYQLV-FKAKKMQPITDRQKKYLKDL 201


>UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria
           RepID=A8EU91_ARCB4
          Length = 247

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 32/245 (13%)

Query: 4   IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           + DTET G   +  +++  ++ V +   V     L     PI  +AM +H IT  ++ +K
Sbjct: 6   LFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLENK 65

Query: 62  PWIEDVIPHYY--------GSEWYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPG 109
           P  + V  ++Y           + +AHN +FD  ++     E   + I T++ A+ L+  
Sbjct: 66  P--KAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123

Query: 110 IKYSNMA-------LYKTRKLNVQTPPGL--HHHRALYDCYITAALLIDIMNT------S 154
           + Y  +        LYK  + N  +  G+    H A+ D  +    L  ++        S
Sbjct: 124 LPYHRLQYLRYALDLYKFEE-NEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182

Query: 155 GWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
               E++ ++T  P  + TF FGKY+G+ + +VA+ D  YL W+  +++ +  +++ TL 
Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242

Query: 215 HYLEN 219
             L N
Sbjct: 243 KVLGN 247


>UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae
           RepID=DPO3_THEP1
          Length = 1367

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 27/174 (15%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      I+EI +V + DG+IV+    L++P R IS ++  I  IT+ M+ +
Sbjct: 360 VLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEMLEN 419

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRVLP-----------EMPGEWICTMKLARRL 106
           K  IE+V+P + G   +   VAHNA+FD R L            E P  +I T+ LA+ L
Sbjct: 420 KRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERP--YIDTLALAKSL 477

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT 157
                YS  ++ +   L         HHRAL D  +TA +    +++M   G T
Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIGIT 526


>UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=A8H432_SHEPA
          Length = 215

 Score = 76.6 bits (187), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 24/161 (14%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET GL   QG   +EI +V + DGK+V+    L+ P   IS    +   I+ AM+A
Sbjct: 20  VLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAMLA 79

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDRRVL-PEMP-------GEWICTMKLARRLW- 107
           D P  E+V+     + G    VAHNASFD+R L  E+        G++ C+M +ARRL+ 
Sbjct: 80  DAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRLYQ 139

Query: 108 --PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
             P  K  ++  YK    N+Q       HRAL D  +TA+L
Sbjct: 140 AAPNHKLGSLVSYK----NIQHDGVF--HRALADSEMTASL 174


>UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria
           RepID=C9S0C0_GEOSY
          Length = 1444

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 19/166 (11%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I+E+A+V V DG+I++       P  P+S   M +  IT+ MV D
Sbjct: 431 VFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMVKD 490

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
            P  ++V+  +    G    VAHNASFD         R    ++    I T++LAR L+P
Sbjct: 491 APKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFLYP 550

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
            +K   +     +K +++      HHRA+YD   T  LL+ ++  +
Sbjct: 551 DLKNHRLNTL-CKKFDIEL---TQHHRAIYDAEATGHLLMRLLKEA 592


>UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2
           Tax=Acidithiobacillus ferrooxidans RepID=B5ES02_ACIF5
          Length = 220

 Score = 76.3 bits (186), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 18/222 (8%)

Query: 4   IIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLV---RPDRPISPQAMAIHRITEAMVA 59
           I DTET G ++  ++E A + V D + +      V   RP +PI   AMA+H I E  + 
Sbjct: 5   IFDTETTGRVEPELIEAAWLAVSDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILEEDLL 64

Query: 60  DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KYSNMAL 117
           + P      +P   G  + V H+  +D  V+ +   + ICT  + R+LWP +  +S  AL
Sbjct: 65  ESPPASSFRLPEDTG--YLVGHSIDYDWGVIGKPDVKRICTYAMTRKLWPEVDSHSQSAL 122

Query: 118 -YKTRKLNVQTPPGLHH-HRALYD---CYITAALLIDIMNTSGWTAEQMADITGRPSLMT 172
            Y   K   +T   L + H AL D   C I    +I  +  + W  E + + + R  +  
Sbjct: 123 MYHFSKDKRKTRDNLKNAHSALADVKFCRILLNKVILSVRPNSW--EDLWEFSERARIPE 180

Query: 173 TFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
           T  FGK++G  ++D+ +    Y RW  NNL  M   LR  L+
Sbjct: 181 TMPFGKHKGVKIADLPD---DYRRWALNNLTDMDTYLRKALE 219


>UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp. PRwf-1
           RepID=A5WEC5_PSYWF
          Length = 237

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 33/231 (14%)

Query: 4   IIDTETCGLQG--------GIVEI--ASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRI 53
           I+DTET GL           I+ I  A ++VI      P S    P +PIS  +MA   I
Sbjct: 5   ILDTETTGLVDPHMTEAAYSIIAINNAKIEVIQA----PRSKRFNPLKPISLGSMATSHI 60

Query: 54  TEAMVA-DKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWP 108
            +  VA + P  E  +P+    E+ V HN  +D  VL         + ICT  ++  L P
Sbjct: 61  CDEDVAHEPPHTEFRLPN--SVEYLVGHNIDYDMAVLKNAGVTHTPKLICTKAMSSYLLP 118

Query: 109 GIKYSNMA--LYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT---AEQ 160
            ++   +   LY   +  V      H H A+YD Y T  +L   I++ N+ G      E 
Sbjct: 119 TLESHKLVSLLYHFHR-QVAREQAKHAHAAIYDIYFTQLVLGSLIELANSQGHNITDVES 177

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERD--PGYLRWLFNNLDSMSPEL 209
           +   +    + T  +FGKY+G+A++++A      GYL+WL    D++ P L
Sbjct: 178 LYQFSEMARIPTHLSFGKYKGQAITELAASSDGAGYLKWLMGQ-DNIDPYL 227


>UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus
           RepID=Q1IXC1_DEIGD
          Length = 180

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 27/173 (15%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDR------PISPQAMAIHR 52
           + D ET GL   +  IVEI ++ V+DG++V       LVRP        PI  +A  +H 
Sbjct: 5   VFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRVHG 64

Query: 53  ITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM----------PGEWICT 99
           I++AMV D P +  V+P +    G     AHN  FD   +             P E+ CT
Sbjct: 65  ISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEY-CT 123

Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++L+RR +P  +  N+ +   R L +   PG   HR+L D  +TA   + +M 
Sbjct: 124 VQLSRRAFPRERTHNLDVLAQR-LGLSFAPG-GRHRSLGDVQVTAEAFVRLME 174


>UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM
           20469 RepID=C8WA42_ATOPD
          Length = 342

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 22/177 (12%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      I+EIA++ V+DGKI    S L+ P R I   A AI+ IT  MV +
Sbjct: 80  VVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMVKN 139

Query: 61  KPWIEDVIPH---YYGSEWYVAHNA-SFDRRVLPE--MPGEWIC------TMKLARR-LW 107
            P ++ VIP    +      + HN+  +D  VL E     +++C      T KLAR+ L 
Sbjct: 140 APTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQILE 199

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           P  K  N+A    ++LNV+       HRAL DCY+T  +   +   S  T E +  I
Sbjct: 200 PPYKLINIA----KRLNVKQ--HGKAHRALADCYMTYGIYEKMREISIATTENVKCI 250


>UniRef50_B0V610 Putative DNA exonuclease X n=2 Tax=Acinetobacter baumannii
           RepID=B0V610_ACIBY
          Length = 245

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 18/202 (8%)

Query: 4   IIDTETCGLQGGIVEIASVDVI------DGKIVNPMSHLVR---PDRPISPQAMAIHRIT 54
           I DTET  L G I+E A+++V+      D  I+  M    +   P  PIS  AMA+H I 
Sbjct: 5   IFDTETHKLHGDIIEAAAMEVVFPQISADILIIPTMFDFTKRYKPSEPISLGAMAVHHIV 64

Query: 55  EAMVADKPWIEDVIPHYYGSEWYVAHNASFD----RRVLPEMPG-EWICTMKLARRLWPG 109
           +  +   P  +         ++ + HN  +D    +R   +  G + ICT+ +AR LWP 
Sbjct: 65  DEDLVKCPSFKTFKWPKENIQYLIGHNIDYDIEAVKRAGADTTGIKSICTLAMARYLWPT 124

Query: 110 IKYSNMA--LYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTA-EQMADIT 165
           ++  N+    Y   +    T  GL + H AL DC  T  LL  I+      + +++   +
Sbjct: 125 LEAHNLTALAYHISRDRKSTRRGLKNAHSALNDCKTTYGLLHTIVQEKNIKSFQELYLFS 184

Query: 166 GRPSLMTTFTFGKYRGKAVSDV 187
            +  + T   +GKY+G A++D+
Sbjct: 185 EKARIPTHIFYGKYKGSAIADL 206


>UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0L3L4_MAGSM
          Length = 237

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 21/184 (11%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++DTET G        I+EI  V++++ +  +     V P+R I   A  +H IT+A 
Sbjct: 4   LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE----------MPGE-WICTMKLA 103
           VA+ P  +++   +    G +  V HNA FD R L            MP E  I T+ LA
Sbjct: 64  VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           RR +PG   +  AL K  +L V    G   H AL D ++ A + +++M  + ++ E  AD
Sbjct: 124 RRKFPGSTVNLDALCK--RLGVDN-SGRTFHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180

Query: 164 ITGR 167
            +GR
Sbjct: 181 ESGR 184


>UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales
           RepID=Q252U5_CHLFF
          Length = 249

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D E  GL   +  I+E A+       +++ M  L+ PDR IS ++  IHRI++AM+ D+
Sbjct: 12  LDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAMLKDQ 71

Query: 62  PWIEDVIPHYYG----SEWYVAHNASFDRRVL---PEMPGE-------WICTMKLARRLW 107
           P I +V P         ++ V H+  FD +VL    E  GE        I T++LA+   
Sbjct: 72  PRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLAKEYG 131

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
                S  AL      NV   P   +HRA+ D  I   +          T EQ+  +  +
Sbjct: 132 DSPNNSLEAL--AVHFNV---PYDGNHRAMKDVEININIFKHFCK-RFRTIEQLKQVLSK 185

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           P  M     GK++G+  S++      YL+W  + +D    +L  +++H +++
Sbjct: 186 PIKMKYMPLGKHKGRCFSEIP---LSYLQWA-SKMD-FDADLLFSIRHEIKH 232


>UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17
           Tax=Fusobacterium RepID=A5TTA5_FUSNP
          Length = 1454

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 21/161 (13%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I+EI +V +  G+IV+  S L+ P RPI      I  IT+  VA+
Sbjct: 429 VFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQVAN 488

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRLWP 108
           +P I++VI     + G    VAHNA FD   +          ++    I T+++AR L+P
Sbjct: 489 EPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDLFP 548

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
            + KY    L KT  L ++      HHRA+ D   TA + I
Sbjct: 549 DLKKYGLGDLNKTLGLALEK-----HHRAVDDSQATANMFI 584


>UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BDG4_9ACTO
          Length = 550

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 81/179 (45%), Gaps = 30/179 (16%)

Query: 4   IIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ++D ET GL  G  I EI +V + DG +V+  S LV+P RPI P   ++  IT AMVAD 
Sbjct: 31  VVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVADA 90

Query: 62  PWIEDVIPHYYGSEW----------YVAHNASFDRRVLPEMPGE----W-----ICTMKL 102
             I  V+ H+   EW           VAHNASFD   L          W     + T+ L
Sbjct: 91  APIASVLEHFL--EWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLAL 148

Query: 103 ARRLWPGIKYSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT 157
           AR   P     N  L          T P    HRAL D   TA +L   ID++  +G T
Sbjct: 149 ARLALPRPLVRNHKLGTVASYFGTATVP---EHRALGDARATAEILLGFIDLLAAAGAT 204


>UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWI2_ALIAD
          Length = 1440

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 19/166 (11%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + DTET GL   +  ++EIA+V V  G+IV+  + L+ P+R + P+ + +  IT  MVA 
Sbjct: 429 VFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMVAG 488

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108
           +P + + +     +      VAHNA FD   L +              I T+ LAR L+P
Sbjct: 489 QPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVLYP 548

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           G K   +    T+K +V     ++HHRAL D   TA + + ++  +
Sbjct: 549 GEKNYKLKTL-TQKFSVDL---VNHHRALADSEATAKVFVHMLKDA 590


>UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA
          Length = 307

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 20/156 (12%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++DTET GL      I+EI  + V + +IV+    L++P   +     A+  IT  M+ D
Sbjct: 24  VLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDMLED 83

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGIKY 112
            P I  V   +  +   +  + HN SFD R L E     +  +++ TM+ AR+L+P +K+
Sbjct: 84  MPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPELKH 143

Query: 113 SNMALYKTRKLNVQTPPGLHH--HRALYDCYITAAL 146
             ++       ++    GLH+  HRAL DC  T  L
Sbjct: 144 HRLS-------DLTDYLGLHNNEHRALADCIATKEL 172


>UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia
           RepID=C6V4W1_NEORI
          Length = 228

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 22/170 (12%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           I+DTET GL  + G  ++EI  V+++D +I   + H+ + P+R IS +A  +H IT   +
Sbjct: 8   ILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQL 67

Query: 59  ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLPE-----------MPGEWICTMKLAR 104
           AD P    I D    + GS   VAHNASFD R L                  I T+ +AR
Sbjct: 68  ADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMAR 127

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +++PG   S  AL +  +++++       H AL D  + A + I++   S
Sbjct: 128 KIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIELSKGS 174


>UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Dethiosulfovibrio peptidovorans DSM 11002
           RepID=C1TRP3_9BACT
          Length = 193

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 81/178 (45%), Gaps = 23/178 (12%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ID ET GL      IVEI ++    G         V P RPI  +A+AIH IT+ MV   
Sbjct: 13  IDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMVEGA 72

Query: 62  PWIED----VIPHYYGSEWYVAHNASFDRRVLP----EMPGEW-----ICTMKLARRLWP 108
           P + +    +       E  V HN SFD   L      + G W       T  LAR+ +P
Sbjct: 73  PGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARKAFP 132

Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADI 164
           GIK YS +AL +   L+     G  HHRAL DC  +A+L   I+    G+    + D+
Sbjct: 133 GIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKDL 185


>UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acinetobacter
           RepID=B2I3R4_ACIBC
          Length = 226

 Score = 73.2 bits (178), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 27/230 (11%)

Query: 4   IIDTETCGLQGGIVEIA--SVDVIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEAM 57
           I+DTET  L G  +EIA     + +G+++       +       PI  +AMA+H I E  
Sbjct: 5   ILDTETNKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEPIDLEAMAVHNIIETD 64

Query: 58  VADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWPGIKY 112
           +  +P  E   +P   G E+ V HN  +D + L    P +  + ICT+ LAR +WP +  
Sbjct: 65  IEGQPSCESFRLPE--GVEFIVGHNIDYDIKALNKCGPAIKVKTICTLALARDVWPDLTS 122

Query: 113 SNMAL--YKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGW----TAEQMADIT 165
             +A+  Y       +    L H H A  D Y T  +LI ++   G     +   M++  
Sbjct: 123 HKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGIKDLNSLYLMSEAV 182

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKH 215
             P +M   T+GK++G  + ++      Y+ WL N  D + P LR  L++
Sbjct: 183 RLPKIM---TWGKHKGTPLKELPR---PYISWLLNKED-LDPHLRKALQN 225


>UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI.
           Incertae Sedis RepID=B0S1A9_FINM2
          Length = 1421

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I EI +V ++D KIV+  + L+ P+ PI  +   +  IT  MV D
Sbjct: 404 VFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMVKD 463

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLWPG 109
            P I+ V+P +    G    +AHNA FD   + +   +        +I T+  AR L P 
Sbjct: 464 MPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALEPH 523

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           +K   +    T+K NV      +HHRA  D   T  + I ++N
Sbjct: 524 LKNHKLDTL-TKKYNVNL---FNHHRACDDARATGEVFICMVN 562


>UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1
           Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM
          Length = 1415

 Score = 72.8 bits (177), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 18/163 (11%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL   +  I EI +V ++DG I    S L+ P   I  +   + RIT A+V +
Sbjct: 403 VFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALVEN 462

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEWIC----TMKLARRLWPG 109
           +P IE+V P +Y        VAHNA FD    RRV  E   ++I     T+  AR     
Sbjct: 463 EPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATVKD 522

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            K  N+A    +K  V     +  HRA+ D   TA L I ++N
Sbjct: 523 TKKFNLATL-CKKFGVSL---VGAHRAVNDAEATAHLFIKLIN 561


>UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus
           RepID=Q6MGT7_BDEBA
          Length = 217

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 30/189 (15%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET G   G   IVEI +V  IDG+     + L+ P RPI P A A++ I++ MV  K
Sbjct: 18  FDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMVKGK 77

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107
           P I+ ++P    + G +  VAHNA FD + L           P   G  + ++ +AR+++
Sbjct: 78  PLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPR--GVILDSLPIARKVF 135

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMAD- 163
           PG+  Y    L +  K+     P  + HRA  D      +   +M   + G  A Q+ + 
Sbjct: 136 PGLPNYKLGTLVQHLKI-----PTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190

Query: 164 --ITGRPSL 170
             +TG+P L
Sbjct: 191 IALTGKPEL 199


>UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales
           RepID=C4PPS2_CHLTJ
          Length = 250

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 24/201 (11%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL   +  ++E A++     +I++ +  L+ P+R +S ++  IH+I++AM+ DK
Sbjct: 12  LDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAMLRDK 71

Query: 62  PWIEDVIPHYYG----SEWYVAHNASFDRRVL---PEMPGEW--------ICTMKLARRL 106
           P   +V     G     +  V H+  FD +VL    E  GE         I T++LA+  
Sbjct: 72  PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLAKEY 131

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                 S  AL   R  NV   P   +HRA+ D  +   +    +     T  Q+  I  
Sbjct: 132 GDSPNNSLEAL--ARHFNV---PHQGNHRAMKDVEMNVKVFKH-LTKRFRTLSQVTHILS 185

Query: 167 RPSLMTTFTFGKYRGKAVSDV 187
           +P  M     GKY+G+  +D+
Sbjct: 186 KPIKMKYMPLGKYKGRLFTDI 206


>UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani
           RepID=Q895Z5_CLOTE
          Length = 380

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +ID ET GL      I+EI ++    G+IV   + L+ P   I  +A  I+ IT  MV D
Sbjct: 86  VIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMVKD 145

Query: 61  KPWIEDVIPHY--YGSEW-YVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
            P IEDV+P    +  E+  VAHNASFD + L         E+    I T++L+R ++  
Sbjct: 146 SPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMYTF 205

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID 149
           +    +   K   L +        HRAL DC  TA + +D
Sbjct: 206 LPNHKLTTIKEH-LCISEDNS---HRALPDCITTAEIYLD 241


>UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria
           RepID=DPO3E_HAEIN
          Length = 256

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 35/181 (19%)

Query: 4   IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54
           ++DTET G+ Q G       I+EI +V++I+ +      H+ ++PDRP  P A+ +H IT
Sbjct: 9   VLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGIT 68

Query: 55  EAMVADKPWI----EDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWIC---- 98
           + M+ADKP      +D + +  G+E  + HNA FD        R++   +  + IC    
Sbjct: 69  DEMLADKPEFKEVAQDFLDYINGAELLI-HNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGW 156
           T+++AR+++PG + +  AL    +L +         R L+   + A +L D+  M T G 
Sbjct: 128 TLQMARQMYPGKRNNLDAL--CDRLGIDNSK-----RTLHGALLDAEILADVYLMMTGGQ 180

Query: 157 T 157
           T
Sbjct: 181 T 181


>UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales
           RepID=A0QF17_MYCA1
          Length = 643

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 42/228 (18%)

Query: 4   IIDTETCGLQG---------GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRIT 54
           ++D ET G +           I EI +V V DG ++   + LV P R I PQ M +  IT
Sbjct: 42  VVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTGIT 101

Query: 55  EAMVADKPWIEDVIPHYYG------SEWYVAHNASFD----RRVLPEMPGEW-----ICT 99
            AMV+D P I+ V+P +            VAHNA FD    R    +    W     +CT
Sbjct: 102 TAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCT 161

Query: 100 MKLARRLW-----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           ++LARR+      P ++ +++A    R   V T P    HRAL D   T  +L  ++   
Sbjct: 162 VRLARRVLSREEAPSVRLASLA----RLFAVTTQP---THRALDDARATVDVLHALIERV 214

Query: 155 G-WTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201
           G       AD+ G    +   T  + R + +++   R PG   +LF  
Sbjct: 215 GNQGVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPGV--YLFRG 257


>UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae
           RepID=C1DWW1_SULAA
          Length = 205

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 26/168 (15%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMA-IHRITEAMVA 59
           I+D ET GL      I+EIA++ V  G +V+    LV+P     P  +  +  IT A+V 
Sbjct: 13  IVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNALVV 72

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP----EMPGEWI-----CTMKLARRLW 107
           DKP IE+V P +     +   VAHNA FD   L     ++ G  I     CT  LA+RL+
Sbjct: 73  DKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKRLF 132

Query: 108 PGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           P +      N+A +     N+   P    HRAL D  +T  L   I++
Sbjct: 133 PDLPSKSLVNLAYH----FNI---PYNKKHRALEDALVTYELFKKIID 173


>UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) n=1 Tax=Deinococcus deserti VCD115
           RepID=C1CX37_DEIDV
          Length = 202

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 26/187 (13%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSH--LVRP-----DRPISP-QAMAIHR 52
           + D ET GL   + GIVEI ++ V++G++   + +  LVRP     +R + P  A  +H 
Sbjct: 5   VFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRVHG 64

Query: 53  ITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRV-LPEMPGEWICTM 100
           I+  MV   P IE+V+P +    G    VAHN  FD        RR+ +   P    CT+
Sbjct: 65  ISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHCTV 124

Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
           +L+RR +P  +  N+ +   R L +   PG   HR+  D  +TA   + ++     TAE 
Sbjct: 125 QLSRRAFPKERAHNLTVLAER-LGLNFAPG-GRHRSFGDVQVTAHAYVRLLELLA-TAEP 181

Query: 161 MADITGR 167
              ++G+
Sbjct: 182 QQRVSGK 188


>UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C737_9FIRM
          Length = 204

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 22/154 (14%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI-SPQAMAIHRITEAMVA 59
           +ID ET GL   +  I+E+ +V V D KIV+  S  V P + I SP+   +  I EAM+ 
Sbjct: 26  VIDIETTGLNPDENEIIEVGAVKVRDRKIVDEFSSFVSPKKDIISPEIRKLTGIDEAMIE 85

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107
               IEDVIP    +   E  + HN +FD   L +         +  +++  +K++R+L 
Sbjct: 86  GADQIEDVIPRFNEFIDGEILLGHNVNFDINFLYDNYERYSDFYLSNDYVDLLKISRKLS 145

Query: 108 PGIKYSNMALYKT-RKLNVQTPPGLHHHRALYDC 140
           P  ++ N  L    +KL ++       HRA+ DC
Sbjct: 146 P--EFENHKLETVLKKLGIKVD---QQHRAVSDC 174


>UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB
          Length = 263

 Score = 70.1 bits (170), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 23/240 (9%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D E+ G+      ++++A + V  G  +   + L   D  ++   +AIH IT AM+
Sbjct: 5   LYFVDVESTGVDLKNDRLIQLAFLKV-QGDKIEAFNDLCYTDIEMNDTVVAIHNITNAML 63

Query: 59  ADKPW---IEDVIPHYYG---SEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108
            DK W    +  I    G   + +++AH    D  +L      +  + + T K AR L  
Sbjct: 64  EDKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTDKCARLLLK 123

Query: 109 GIKYSNMALYKTRKLNVQTPPG---------LHHHRALYDCYITAALLIDIMNTSGWTAE 159
                 +    TR    Q             L  H AL D      L  +++       +
Sbjct: 124 EAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEELLERVEGGID 183

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
            +  +T  P ++   TFGKY+GK+  +V ++ P  L W++ N+ +  P+L  TL+H+L+ 
Sbjct: 184 ALVSLTAEPMMLEKITFGKYKGKSFEEVFQKSPLDLVWMYANMAADWPDLDYTLEHWLKQ 243


>UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855
           RepID=Q2S2L6_SALRD
          Length = 538

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 17  VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHY---YG 73
           +EI +V V DG +V+    LV P + +  +   +  IT  MV + P  ++V+P Y    G
Sbjct: 1   MEIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLG 60

Query: 74  SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPGIKYSNMA-LYKTRKL 123
               VAHN SFD   L           +P E +CT++LARRL PG+    ++ L +   +
Sbjct: 61  DGILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDI 120

Query: 124 NVQTPPGLHHHRALYDCYITAALL 147
           +V+       HRAL D   T+ +L
Sbjct: 121 DVEG-----RHRALGDAEATSVVL 139


>UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A497_GEMAT
          Length = 214

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 28/180 (15%)

Query: 4   IIDTETCGLQ--GG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G +  GG  I EIA V V  G++    S LV P+RPI P   ++  IT  MV 
Sbjct: 8   VVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDMVR 67

Query: 60  DKPWIED----VIPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
           D+P   +    V+    GS  +VAHNA FD R +          E+ G  +CT++ AR  
Sbjct: 68  DQPTFREITSNVLDRLRGS-IFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARAA 126

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS------GWTAEQ 160
            P +   ++  + TR   ++       HRA  D   TA  L  ++N +       WTA Q
Sbjct: 127 LPQLSRRSLD-HVTRYFGIEIAA---RHRAAGDALATAHALCRMLNIASEHGVESWTALQ 182


>UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN
          Length = 1401

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 24/165 (14%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I+EI +V + + KIV+     V P  PIS     +  I E+MV D
Sbjct: 390 VFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMVKD 449

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P IE+V+P +         VAHNA+FD        +++   +    + T++L+R L+  
Sbjct: 450 APLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLYQD 509

Query: 110 I---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +   K   +A +   KL       LHHHRA+ D   TA + I ++
Sbjct: 510 LKNYKLDTLAEFFEVKL-------LHHHRAVEDAKATAEIFIKML 547


>UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1ART4_RUBXD
          Length = 560

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 12/120 (10%)

Query: 4   IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G    +GGI E+ ++ ++ G++V+  S LV P RPI P    +  IT+ MV+ 
Sbjct: 35  VFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMVSG 94

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPGIK 111
            P   +VIP    +      VAHNA FD   L        +P   + T++LAR L PG++
Sbjct: 95  APPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPGLR 154


>UniRef50_Q6A708 Putative DNA polymerase III epsilon subunit (Exonuclease) n=1
           Tax=Propionibacterium acnes RepID=Q6A708_PROAC
          Length = 236

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 20/163 (12%)

Query: 5   IDTETCGLQGGI--VEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAMVADK 61
           +D ET    GG+   ++A V V DG+IV+ ++ L+RP +   S +   +H I+ A VAD 
Sbjct: 72  VDFETANRMGGVSACQVAMVKVCDGQIVDRLNTLIRPPKGWDSFEFTYLHGISAADVADA 131

Query: 62  P-W--IEDVIPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109
           P W  I D + H+       AHNA+FD RV  +         +P  + C+ + A+RL PG
Sbjct: 132 PSWTNIADTVSHFVDGVTVYAHNAAFDSRVWRQLDEHFGTTTLPAPFFCSYRTAQRLIPG 191

Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +  Y    +      N Q    L+HHRA  D    A ++ ++ 
Sbjct: 192 LPNYKLPTVLHACAPNYQ----LNHHRADSDAEACALIVCELQ 230


>UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinetobacter
           RepID=B7I2S0_ACIB5
          Length = 234

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 22/227 (9%)

Query: 4   IIDTETCGLQGGIVEIA--SVDVIDGKIVNPMS----HLVRPDRPISPQAMAIHRITEAM 57
           I+DTET  L G  +EIA   +++  GK+    S     L +   PIS  AMA+H I E+ 
Sbjct: 11  ILDTETHTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAVHHILESD 70

Query: 58  VADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGIK 111
           + ++P  +   +P    + + + HN  +D   +     +      ICT+ LAR+ WP  +
Sbjct: 71  LENQPHYKTFKLPD--TTTYIIGHNIDYDIAAIARCGVDVSHIKPICTLALARKTWPDAE 128

Query: 112 YSNMA--LYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM-NTSGWTAEQMADITGR 167
             N++  +Y   + + +    L   HRA  D  +TA +L+ I+ + +    E++  ++  
Sbjct: 129 AHNISALIYMISQGSSKARELLKGAHRADADIILTANILMHIVYHLNIHDIEELYRVSEE 188

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
             + TT  FGK++G A   +AE    Y++WL    D +   LR  L+
Sbjct: 189 ARIPTTINFGKHKGTA---IAELPKDYIQWLLRQ-DELDVYLRKALE 231


>UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton
           thalassium ATCC 35110 RepID=B3QSB2_CHLT3
          Length = 578

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 21/164 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G    +  I+EI ++   +G+ V  +  LV P++ IS        IT +MV +
Sbjct: 26  VVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMVDN 85

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
            P I+ +   +  ++    +VAHN  FD         R    ++   W+CT +LARRL P
Sbjct: 86  APVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRLLP 145

Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
             +  N+  L K   + V+     + HRA  DC  T  LL +++
Sbjct: 146 TQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELI 184


>UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus
           VCS1703A RepID=A5EY86_DICNV
          Length = 233

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 35/205 (17%)

Query: 4   IIDTETCGLQGG---------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRI 53
           I DTET G+            I+EI  V++ID        H  + P++P+ PQA  +H I
Sbjct: 7   IFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQAFKVHGI 66

Query: 54  TEAMVADKPWIEDVIPHYYG----SEWYVAHNASFDRRVLP---EMPG---------EWI 97
           ++  +ADKP+ +DV+P +      ++  VAHN +FDR+ +    ++ G           +
Sbjct: 67  SDEFLADKPFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCDYRLGDKFTLV 126

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
            ++K+AR  + G + +  AL K  +  V    G   H AL D  + A + + +  T G +
Sbjct: 127 DSLKIAREKFAGARNNLDALCK--RFGVDN-TGRELHGALLDAQLLAEVYLKL--TGGQS 181

Query: 158 ----AEQMADITGRPSLMTTFTFGK 178
               A  M     R    T  TF K
Sbjct: 182 DLSFAHPMMASARRAEQKTAATFAK 206


>UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus
           RepID=C5D3B0_GEOSW
          Length = 921

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 22/166 (13%)

Query: 4   IIDTETCG---LQGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           IID ET G    +G  I+++  V + +GKIV+  S    P+R I P    +  ITE MVA
Sbjct: 7   IIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQMVA 66

Query: 60  DKP-WIEDV--IPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107
           D P + E+   +       ++VAHN SFD +          LP   G  I T++LAR ++
Sbjct: 67  DAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARIVF 126

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           P  +   +  L K   ++   P     H+A  D  +TA L I ++N
Sbjct: 127 PTAESYKLGDLAKQLHIDHDQP-----HQADSDAEVTAKLFIALLN 167


>UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae
           RepID=C9M9P8_9BACT
          Length = 208

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 21/164 (12%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL      I+E+ ++  + GK     S L+ P  PI     +IH IT+ MVA +
Sbjct: 15  LDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMVAGQ 74

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRR----VLPEMPGEWIC-----TMKLARRLWPG 109
           P +E+VI     + G    V HNA FD      VL ++  +W       T+ L+R  +PG
Sbjct: 75  PRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVAFPG 134

Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++ YS  +L    +          HHRAL DC+ T  L    + 
Sbjct: 135 LRSYSLESLSDFFEFKEGV-----HHRALCDCWYTQQLFTRFLE 173


>UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales
           RepID=Q3IIU0_PSEHT
          Length = 730

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 24/167 (14%)

Query: 4   IIDTETCG-LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G L+GG  I EI  V V  GK+++  + LV P R I     ++  I+++MV++
Sbjct: 569 VVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSMVSN 628

Query: 61  KPWIEDVIPHYYGS---EWYVAHNASFD----------RRVLPEMPGEWICTMKLARRLW 107
            P   D++           +VAHN +FD           +V  +MP   +CT+  +R+ +
Sbjct: 629 APVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPK--LCTVVESRKAF 686

Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            G+K YS   L K   LN+ +     HHRAL D   TA LL+ I  +
Sbjct: 687 AGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQKS 728


>UniRef50_Q2SPW2 Putative exonuclease n=2 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2SPW2_HAHCH
          Length = 192

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 4   IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ++DTET GL  Q  ++EI+ +D + G ++     LVRP  P+ P+A  IH +T   +A+K
Sbjct: 19  VLDTETTGLDDQAEVIEISVMD-MRGNVL--FDQLVRPLNPVPPEAAEIHGVTNEKLANK 75

Query: 62  PWIEDVIPHYY---GSEWYVAHNASFDRRV---------LPEMPGEWICTMKL-AR-RLW 107
           P   DV    +   G    VA+NA FDRR+         LP +   W C M   AR R  
Sbjct: 76  PNFPDVYISLWRAIGGRTVVAYNADFDRRLLKQTCAAYRLPMIEANWQCAMNAYARYRKE 135

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALL 147
           P  K          K   Q    ++  HRA+ DC+ T  ++
Sbjct: 136 PDAKRGGYRRQSLAKAAAQMGIEVYGAHRAVADCFTTVEVI 176


>UniRef50_D1C533 Exonuclease RNase T and DNA polymerase III n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C533_SPHTD
          Length = 197

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP- 62
            +DTET GL G   EI  + V+D +    +  LVRP RPI P+  AIH IT+ MVA  P 
Sbjct: 26  FLDTETTGLDGQ-AEIVEIAVVDAQGTVLLDTLVRPLRPIPPEVQAIHGITDRMVAGAPR 84

Query: 63  WIE---DVIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWPGI 110
           W E   +++  +      V +NA+FDRRV         LP    EW C M L    + G 
Sbjct: 85  WPEVHAELVRLFRERPRAVVYNAAFDRRVIAQTAQQHCLPPPTAEWHCAM-LRYAAYAGE 143

Query: 111 KYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTSG 155
           ++     Y+  +L+      G+    HRAL D  +   ++  +    G
Sbjct: 144 RHPVTGKYRWHRLDRAAAALGIPRPTHRALGDALVCRGVVAAMAGLGG 191


>UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria
           RepID=DPO3E_SALTI
          Length = 243

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 52/242 (21%)

Query: 4   IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54
           ++DTET G+ Q G       I+EI +V+VI+ ++     H+ ++PDR + P+A  +H I 
Sbjct: 10  VLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGIA 69

Query: 55  EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD-----------RRVLPEMPGEWIC- 98
           +  + DKP   DV+  +     G+E  V HNASFD           +R +P+      C 
Sbjct: 70  DEFLLDKPVFADVVDEFLDYIRGAEL-VIHNASFDIGFMDYEFGLLKRDIPKT--NTFCK 126

Query: 99  ---TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
              ++ LAR+++PG + S  AL    +++       +  R L+   + A +L        
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEID-------NSKRTLHGALLDAQIL-------- 171

Query: 156 WTAEQMADITGRPSLMTTFTFG---KYRGKAVSDVAERDPGYLRWLFNNLDSMSP-ELRL 211
             AE    +TG  + MT    G   + +G+A      R    LR +F + + ++  E RL
Sbjct: 172 --AEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRL 229

Query: 212 TL 213
            L
Sbjct: 230 DL 231


>UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales
           RepID=Y2191_MYCTU
          Length = 645

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 4   IIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRIT 54
           ++D ET G +           I EI +V V  G ++   + LV P   I PQ + +  IT
Sbjct: 45  VVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGIT 104

Query: 55  EAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPG-EWICTMKL 102
            AMV + P I+ V+P ++   G    VAHNA FD        RR     P  + +CTM+L
Sbjct: 105 TAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRL 164

Query: 103 ARRLW-----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           ARR+      P ++ + +A    R   V + P    HRAL D   T  +L  ++   G
Sbjct: 165 ARRVLSRDEAPSVRLAALA----RLFAVASNP---THRALDDARATVDVLHALIERVG 215


>UniRef50_A7GA16 Exonuclease, DNA polymerase III, epsilon subunit family n=28
           Tax=Clostridium RepID=A7GA16_CLOBL
          Length = 309

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 19  IASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKPWIEDV---IPHYYGS 74
           I  V V DG+IV  + +L++P +    P  + IH I   MV D+   + +   I  Y+ +
Sbjct: 21  IGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWGKIKGYFNN 80

Query: 75  EWYVAHNASFDRRVLP--------EMPG-EWICTMKLARRLWPGIKYSNMALYKTRKLNV 125
              +AHNASFD  VL         +MP  E+ICTMKL++       YSN+   +   +N 
Sbjct: 81  NLVIAHNASFDMSVLRSTLKLYNIKMPSFEYICTMKLSKNF-----YSNIDNARLNTVNN 135

Query: 126 QTPPGLHHHRALYDCYITAALLIDI 150
                  HH AL D    + +LI+I
Sbjct: 136 FLGYKFKHHDALADAMACSNILINI 160


>UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE
          Length = 1427

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 26/163 (15%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V + +GK+V+  S  V P+R I  + + +  I + MV D
Sbjct: 415 VFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVKD 474

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWPG 109
            P IE+V+P +         VAHNA+FD   + +   ++        + T+ L + L+P 
Sbjct: 475 APKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLYPE 534

Query: 110 IKYSNMALYKTRKLNVQTP----PGLHHHRALYDCYITAALLI 148
           +        K  KLNV       P L+HHRA+ D   T  +L+
Sbjct: 535 L--------KRYKLNVVAKHLGIPLLNHHRAVEDAKTTGDILL 569


>UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales
           RepID=A1ARI3_PELPD
          Length = 170

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 16/158 (10%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL     G ++E+A+V + +GK+V  +  L+R +  I P A  +H I   M
Sbjct: 5   LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           +   P  EDV      + G    VAHNA FD   +          +    ICT+++ARR 
Sbjct: 65  LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           +P +    +     R L    P     HRAL D  + A
Sbjct: 125 FPELASHRLEAL-ARHLLGSIPEDCRLHRALGDARLAA 161


>UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE
          Length = 1449

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 18/158 (11%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V + DG+IV+  S  V P   I  +   +  IT+ MV  
Sbjct: 437 VFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVNG 496

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFD----RRVLPEM----PGEWICTMKLARRLWPG 109
           +P I++V+P    + G+   VAHNA+FD    ++ L +M        + T+ LAR L+P 
Sbjct: 497 QPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLYPD 556

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           +K   + L   + L +      +HHRA+ D   TA +L
Sbjct: 557 LKKVKLNLV-AKHLGISLE---NHHRAVDDAKATAEIL 590


>UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria
           RepID=Q1GL30_SILST
          Length = 479

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 16/163 (9%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMV 58
           + DTET GL   +  IVE+A+  V++G+I++       V P RPI   +  IH + +A V
Sbjct: 275 VFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDADV 334

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEWICT-------MKLARRLWP 108
           A  P IE VIP ++    S   VAHNA FD  +L +   +  C+         L   L  
Sbjct: 335 AQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSALVF 394

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           GI   +       +L+++  P  H H A  D   TA  LI ++
Sbjct: 395 GISADHSLDALCSRLSIEI-PARHRHTAKGDARATAEALIRLL 436


>UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae
           RepID=DPO3E_AQUAE
          Length = 202

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 21/165 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +ID E  G    +  ++++A+V V  G I    S LV P   I  +   +  IT AM+  
Sbjct: 21  VIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAMLVG 80

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108
           +P IE+V+P +    G    V H    D + + +   ++         +CT+KLAR+++P
Sbjct: 81  QPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKVFP 140

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           G+ KYS   + +              HRAL D  +TA + I I+ 
Sbjct: 141 GLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILE 180


>UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis
           L1-82 RepID=C7GFC6_9FIRM
          Length = 226

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 22/196 (11%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G+      ++EI++V V +GKIV+  S LV P RPI   A +++ I++ MV +
Sbjct: 19  LYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMVEN 78

Query: 61  KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107
               E V+P +    G +    HN A FD + L           +  ++I T+ +A+  +
Sbjct: 79  ARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKLCF 138

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD--IT 165
           P  K+  ++        + T      HRAL DC +   +   +   SG T+ +  +  I 
Sbjct: 139 PEWKHRKLSDL-AEHYGISTKGA---HRALADCRMNQQVFELMAKESGGTSAKQTEEKIC 194

Query: 166 GRPSLMTTFTFGKYRG 181
            R  L      G++ G
Sbjct: 195 PRCGLALKKRNGRFGG 210


>UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2
           Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5
          Length = 441

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 35/235 (14%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL+     I+EIA+    + +I++  + LV P+  I P    I+ I   MV D
Sbjct: 133 VVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMVKD 192

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPG 109
            P I++V+P   ++ G    VAHNA FD + L          +    I T+ ++R+L+  
Sbjct: 193 CPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLFSE 252

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169
           I+   +   K   LN+        HRAL DCY+   + ++  +T     + +A+I     
Sbjct: 253 IENHKLGTIK-EYLNIDVQDS---HRALPDCYVCGQIYLE-YSTKEKNKKALANIKLHSD 307

Query: 170 LMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFN----NLDSMSPELRLTLK 214
           +      G  + +  S V E      +D  Y+R+ F     ++ +    LRL LK
Sbjct: 308 I------GLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356


>UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes
           RepID=Q67P96_SYMTH
          Length = 1475

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 20/177 (11%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G       I+E+ +V    G+IV+     VRP +P+ P+   +  IT  M+  
Sbjct: 456 VLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDMLEG 515

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWP 108
            P   + +  ++   G    VAHNA FD   L          E     + T+ LAR + P
Sbjct: 516 APEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAVLP 575

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            ++  ++A   T++L V   P + HHRA  D    A +L+ ++  +    E +AD+ 
Sbjct: 576 HMRSHSLAAL-TKELQV---PLVDHHRADADAKTAAMVLMKLLERA-EGVETVADLN 627


>UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales
           bacterium RepID=Q1EM31_9BACT
          Length = 1428

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET GL   +  I+EI ++ +   +++   S  V+P++ +S    ++  ITE M
Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476

Query: 58  VADKPWIEDVIPHYYGSEW---YVAHNASFD-----RRVLPEMPGEW----ICTMKLARR 105
           +++   I++V+P +         VAHNASFD       V     G+W    I T+ LA+ 
Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           L+    YS   + K  KL         HHRA  D  +TA +L
Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVL 573


>UniRef50_Q65S83 DnaQ protein n=29 Tax=Gammaproteobacteria RepID=Q65S83_MANSM
          Length = 260

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 35/182 (19%)

Query: 4   IIDTETCGL-QGG-------IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54
           ++DTET G+ Q G       I+EI +V++I+ +      HL ++PDR + P+A+ +H IT
Sbjct: 12  LLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVHGIT 71

Query: 55  EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPGEWIC---- 98
           + M+ DKP   +V   +     G+E  + HNA FD        R+   ++    IC    
Sbjct: 72  DEMLEDKPVFTEVAQEFIDFIKGAELLI-HNAPFDVGFMDYEFRKHHIDVKTADICSVTD 130

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGW 156
           T++LAR+++PG + S  AL    +L +         R L+   + A +L D+  + T G 
Sbjct: 131 TLQLARQMYPGKRNSLDAL--CDRLGIDNTK-----RVLHGALLDAEILGDVYLVMTGGQ 183

Query: 157 TA 158
           T+
Sbjct: 184 TS 185


>UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z9S3_9FIRM
          Length = 1474

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 24/164 (14%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V V +GKI++  S  V P+ PI  +   +  I + MV D
Sbjct: 411 VFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMVID 470

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P IE+++P +         VAHN+ FD        +R   E     I T+ ++R L  G
Sbjct: 471 APKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLIIG 530

Query: 110 IKYSNMALYKTRKLNVQTPPGL---HHHRALYDCYITAALLIDI 150
                +  YK    NV    G+   HHHRA+ D   TA + + +
Sbjct: 531 -----LGRYKLD--NVAKALGIVLDHHHRAVDDAECTALIFLKL 567


>UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18
           RepID=C6MPJ2_9DELT
          Length = 835

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GLQ      +V I++V +  GK+ N      LV P R I  ++ A HRI + M
Sbjct: 643 VFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIEDHM 702

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89
           VAD P + +V P    Y G    VAHNA+FD++ L
Sbjct: 703 VADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCL 737


>UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RJC1_MOOTA
          Length = 921

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      I+EIA+V +  G I      LV P RPI P    +  I++AMV +
Sbjct: 8   VLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMVRE 67

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE-W----ICTMKLARRLWPGIKY 112
            P + +V+P     +     V HN +FD   L +  G  W    + T+ L+R L+P +  
Sbjct: 68  APPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCLA- 126

Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           S+   Y ++ L ++      HHRAL D   TA LL
Sbjct: 127 SHRLDYMSKYLTLE---ATGHHRALDDVLTTARLL 158


>UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4KA24_THASP
          Length = 769

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  I+++ +  +++GK++   S   LV P+RP++P++  IH IT  M
Sbjct: 581 VFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITSEM 640

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89
           +  +P I+ V+P ++        +AHNA+FD R L
Sbjct: 641 LRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFL 675


>UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CW68_HALOH
          Length = 1397

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 21/166 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL   +  I+EI +V V  GK+++  S  V+P   I  +   +  IT  MV+ 
Sbjct: 387 VFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMVSR 446

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDR---RVLPEMPGEW------ICTMKLARRLWP 108
            P IE VI     +      VAHNA FD    +V  +  G+       + T+ L+R L P
Sbjct: 447 APDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRALLP 506

Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            +  SN  L    R LNV+     +HHRA+ D   T+ + I+ ++ 
Sbjct: 507 DL--SNHKLNTLARHLNVRLD---NHHRAVEDARATSEIFINFLSN 547


>UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT
          Length = 726

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 22/165 (13%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL   Q  I EI +V V +G+IV+  S  V P   I    + +  IT+ MV D
Sbjct: 424 VFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMVKD 483

Query: 61  KPWIEDVIPHYY----GSEWYVAHNASFDRRVLPE---MPGE-----WICTMKLARRLWP 108
            P +E V+  +     GS   VAHNA+FD   + +   + GE     +I T++L R+++P
Sbjct: 484 APPVEQVLNEFMEFIQGSV-LVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMFP 542

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            + +Y    + K  K+ ++     +HHRA+ D   TA + +  +N
Sbjct: 543 ELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCIN 582


>UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW
           RepID=B6ISI0_RHOCS
          Length = 699

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 26/173 (15%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  +V +A V +++G+I+       L+ P R I   + AIH IT+AM
Sbjct: 508 VFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITDAM 567

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           VA+ P  E V+P    + G    VAHNA+FD + L            G  + TM L+R++
Sbjct: 568 VAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSRQI 627

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGL-HHHRALYDCYITAAL---LIDIMNTSG 155
                  +   +    L  +   GL   H A+ D  +TAA+   L+D++ T G
Sbjct: 628 -----QGDHGEHSLDGLAARLGIGLVDRHSAMGDSLMTAAIFLRLMDMLETQG 675


>UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae
           RepID=B4W5N5_9CAUL
          Length = 241

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 25/183 (13%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58
           ++DTET G        ++E+  +++ D        H  V P+R I P A+ +H IT+  V
Sbjct: 6   VLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDKV 65

Query: 59  ADKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP--------EMPGE--WICTMKLARR 105
            D P    I D +  + G    +AHNA FDR  +          + GE  WI T+KLA+ 
Sbjct: 66  KDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQA 125

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            +PG+  S  AL K  K+++         R L+   I A LL ++        E++ D++
Sbjct: 126 RFPGMPNSLDALCKRFKVSLV-------ERTLHGALIDARLLAEVYLELRGGKERVLDLS 178

Query: 166 GRP 168
             P
Sbjct: 179 SAP 181


>UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BAS5_PARDP
          Length = 659

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 17/156 (10%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAMVA 59
           + DTET GL      IV+IA + +  G++       LV P RPI P + A+H IT+AMVA
Sbjct: 455 VFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMVA 514

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFD----RRVLPEMPGEW----ICTMKLARRLWP 108
             P +   +    H+      VAHNA FD    RR +PE    +    + T+ L+  LW 
Sbjct: 515 GAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW- 573

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           G    +     T +L +  PP    H A+ D   TA
Sbjct: 574 GQSAPHSLDALTERLGIVIPPE-ARHTAMGDARATA 608


>UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1
           RepID=A9DMS8_9FLAO
          Length = 457

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 20/184 (10%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           IID ET G    I EI S+   DG+ IV+  + LV P+  I     A+  I  AMVAD P
Sbjct: 9   IIDVETTGRSNKITEI-SIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADAP 67

Query: 63  WIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGIK 111
              ++            +VAHN +FD  V+         +   + +CT++L+R L PG K
Sbjct: 68  TFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGFK 127

Query: 112 -YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170
            YS   L K+  LN+        HRA  D   T  +L  ++ T    AE       R S 
Sbjct: 128 SYSLGKLCKS--LNIHISD---RHRARGDAAAT-VILFQLLLTKDAAAETFQKFLKRESK 181

Query: 171 MTTF 174
             T 
Sbjct: 182 EATL 185


>UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis
           excentricus CB 48 RepID=C5SPM0_9CAUL
          Length = 717

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G Q     + EI +V + +G+I++    L+ P+R I P    +  I+ AMV D
Sbjct: 547 VVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAMVRD 606

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLP------EMPGEW--ICTMKLARRLWPG 109
            P   D+      +     +VAHN +FD   L       E P  +  +CT+   RR +PG
Sbjct: 607 APRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRHFPG 666

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           +    +    +R+  ++     +HHRAL D    A LL
Sbjct: 667 LAAYGLGPL-SREFGIELK---NHHRALSDAMAAAELL 700


>UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1
           RepID=A3HRT4_9SPHI
          Length = 456

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 21/193 (10%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           I+D ET G      GI EIA + + DG K++     L+ P++ I      +  I  +MV+
Sbjct: 5   IVDIETTGGAASTCGITEIA-ILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSMVS 63

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWP 108
           D P  E++    +       +VAH+ +FD          +  E   + +CT++LAR++ P
Sbjct: 64  DAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKIIP 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ-MADITGR 167
           G+   ++     R    Q  P L  HRA+ D   TA L   ++     T  Q +   +G 
Sbjct: 124 GLSSYSLG----RICETQKIPILARHRAMGDARATAILFDQMLKKDSQTVFQALKKNSGE 179

Query: 168 PSLMTTFTFGKYR 180
             L   F   KYR
Sbjct: 180 AFLPPNFPITKYR 192


>UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO
           RepID=UPI0001BCC2A4
          Length = 663

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I+E+A+V +  G ++      + P  P+S   + +  IT+ MV  
Sbjct: 429 VFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMVRG 488

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
               E+V+     +      VAHNA+FD         R  +PE     I T++LAR L+P
Sbjct: 489 SKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYLYP 548

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
             K   + +  ++K  V       HHRA+YD   T  L
Sbjct: 549 QFKRFGLGVL-SKKFGVSLE---QHHRAIYDAEATGHL 582


>UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas
           subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL
          Length = 247

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58
           ++DTET G        ++E+  ++++D        H  V P+R I   A+ +H IT+  V
Sbjct: 6   VLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDKV 65

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE----------WICTMKLARR 105
            D P    ++     + G    +AHNA FDR  +    G           WI T++LA++
Sbjct: 66  KDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQK 125

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            +PG+  S  AL K  K+++         R L+   I A LL ++        E++ D++
Sbjct: 126 RFPGMANSLDALCKRYKISLVD-------RTLHGALIDARLLAEVYLELKGGKERVLDLS 178

Query: 166 GR 167
            R
Sbjct: 179 SR 180


>UniRef50_Q47RH7 DNA polymerase III, epsilon subunit n=1 Tax=Thermobifida fusca YX
           RepID=Q47RH7_THEFY
          Length = 210

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 5   IDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI---SPQAMAIHRITEAMVAD 60
           ID ET    QG +  +  V V DG+IV+  + LVRP  P+       +A+H IT   VAD
Sbjct: 8   IDFETANRNQGSVCAVGLVRVTDGRIVDRYTTLVRPPAPVDHFEQDNIAVHGITPEHVAD 67

Query: 61  KP-W--IEDVIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108
            P W  +   I  +     +VAHNA FD  V         LPE    + C++ +ARR WP
Sbjct: 68  APAWPQVHTTILEFAAGSPFVAHNAVFDMGVIRAACAHAGLPEPSLHYACSLDIARRTWP 127

Query: 109 GIK 111
            ++
Sbjct: 128 ALR 130


>UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales
           RepID=C7H779_9FIRM
          Length = 1417

 Score = 63.5 bits (153), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 76/159 (47%), Gaps = 24/159 (15%)

Query: 4   IIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + DTET GL  G+    EI +V V +G++V      V+P +PI+P+   +  IT  MVAD
Sbjct: 399 VFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMVAD 458

Query: 61  KPWIEDVIP---HYYGSEWYVAHNA-SFDRRVLPEMPGE--------WICTMKLARRLWP 108
            P  ++ +     +      VAHNA +FD R L              +I T+ +A+ ++P
Sbjct: 459 APGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAMYP 518

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
           G+  Y    + K  +L     P    HRA   C  +AAL
Sbjct: 519 GLHNYKQGTINKHLEL-----PSYEAHRA---CEDSAAL 549


>UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter
           hongkongensis HLHK9 RepID=C1DBV5_LARHH
          Length = 493

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 19/151 (12%)

Query: 4   IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D ET G    +  I EI  V+V  G +    S LV P +PI P    +  I++AMVA+
Sbjct: 8   IVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMVAE 66

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P   ++ P        +  +AHNA FD        RR+      + +CT+KL+RRL+P 
Sbjct: 67  APPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLYPQ 126

Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYD 139
             K+S  +L     ++V  PPG+  HRAL D
Sbjct: 127 HAKHSLDSLIARHGIDV--PPGM-RHRALGD 154


>UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii
           PG-8A RepID=A9NEU3_ACHLI
          Length = 1504

 Score = 63.2 bits (152), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 41/184 (22%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G    +  I+EIA+  V  G I      L+ P+  +S     I  IT+ MV +
Sbjct: 414 VFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEMVEN 473

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLW- 107
           +  IE+V+P    +      VAHNASFD   + E          P   I T+ +AR  + 
Sbjct: 474 EKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARYFYN 533

Query: 108 -------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
                              P +K  N+ AL K  K+N++      HHRA+YD Y TA + 
Sbjct: 534 NTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATAEVF 588

Query: 148 IDIM 151
           ++++
Sbjct: 589 LNML 592


>UniRef50_Q9APT6 DNA polymerase III n=1 Tax=Pseudomonas aeruginosa
           RepID=Q9APT6_PSEAE
          Length = 204

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 4   IIDTETCG-LQGGIVE--IASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D E  G     +VE  IAS  V++G+   P S L++P  PI+ QA  +H I  + V  
Sbjct: 15  IVDVEGNGHTPPDLVELAIASFPVVEGE--EPSSWLIKPPNPITWQAKRVHGIGNSSVKG 72

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGIK- 111
            P  E++   +      +W+VAHNAS D  V+     +W     I T+KLAR ++P  + 
Sbjct: 73  SPVWEELRGDVEQQLQGKWFVAHNASIDYEVMKRHLPDWAPVGVIDTLKLARHVYPDAES 132

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +S  AL     L+ +    L  HRA  D  +TA LL  ++  S
Sbjct: 133 HSLSALLAMTGLDSEVSGEL--HRAGEDARVTALLLSRLLKDS 173


>UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS
          Length = 1446

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 21/160 (13%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I D ET GL      I+E+A+V + DG++V      + P+RP+S     +  IT  MV  
Sbjct: 427 IFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMVHG 486

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
                +V+     + G      HN SFD         R  +  +    I T++L+R L P
Sbjct: 487 AKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRMLHP 546

Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
             K   + +L K  K+N++     HHHRA  D   T  LL
Sbjct: 547 EYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLL 581


>UniRef50_A6WH29 Exonuclease RNase T and DNA polymerase III n=1 Tax=Kineococcus
           radiotolerans SRS30216 RepID=A6WH29_KINRD
          Length = 203

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           ++DTE+  L G +VEIA  DV    +    S LVRP  P+ P A A+H I +  + D P 
Sbjct: 51  LLDTESTALDGQLVEIAITDVHGAPL---FSSLVRPTTPVDPGARAVHGIGDEELQDAPD 107

Query: 64  IEDVIPHYYGS---EWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPG-----IKYSNM 115
           +  V P    +      +A+NA FDR +L    GE I    L+   W        ++   
Sbjct: 108 LLMVAPQLRAALAGRHVIAYNARFDRGLL-RREGERIGVDLLSSTRWGCGMHCYTRFRGR 166

Query: 116 ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
              + R L     PG   HRA+ DC   A +L +I
Sbjct: 167 VDSRGRHLRASRLPGA-RHRAVGDCRSLAEVLQEI 200


>UniRef50_C1SJH8 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SJH8_9BACT
          Length = 179

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 28/154 (18%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVN---PMSHLVRPDRPISPQAMAIHRIT 54
             + DTET G+       ++EI +V V  G +++       L+ P  PI   A ++H I+
Sbjct: 11  FTVFDTETTGMSPDKGARLLEIGAVKVKPGLVLDLQDSFCTLINPKAPIPYNAYSVHGIS 70

Query: 55  EAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKL 102
            AMVADKP I+DV+P ++    +    AHNA FD   +     E          + T+KL
Sbjct: 71  TAMVADKPEIKDVLPGFFSFTENTIIAAHNARFDCSFVSHHSAECCIVNPMTKIVDTVKL 130

Query: 103 ARRLWPGIK---------YSNMALYKTRKLNVQT 127
           A+    G+K         Y +M +  +R L  Q+
Sbjct: 131 AKSAHSGLKSYSLGNLIHYFSMDIPPSRHLQTQS 164


>UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae
           RepID=A5LFK6_STRPN
          Length = 307

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 5   IDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           +D ET    +G +  I  V   DG IV+    L+ P+       + IH IT   V D P 
Sbjct: 8   LDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLDSPT 67

Query: 64  IEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLWPGIK 111
             +V   I  + G +  VAH A FD   L ++           E+IC+ +LA+   PG  
Sbjct: 68  FPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALPG-- 125

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
                 YK ++L       L HH AL D   +  +L  +++T+ ++
Sbjct: 126 ---QLNYKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS 168


>UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria
           RepID=Q1QW65_CHRSD
          Length = 253

 Score = 62.8 bits (151), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 37/195 (18%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ++DTET G+  + G  ++EI +V+V++ ++  N     + P+R I P+A+ +H IT   V
Sbjct: 5   VLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNERV 64

Query: 59  ADKPWIEDVIPHYY----GSEWYVAHNASF-------------DRRVLPEM-PGEWIC-- 98
           AD+P   D+   ++    G+E  V HNA+F             D+R  P + P    C  
Sbjct: 65  ADEPVFADIADAFWEYIRGAEL-VIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123

Query: 99  --TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTS 154
             T+ +AR+L PG + +  AL K   ++       +  R L+   + A +L D+    T 
Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGID-------NGRRVLHGALLDAEILSDVYLTMTG 176

Query: 155 GWTAEQMADITGRPS 169
           G TA  +A I  R  
Sbjct: 177 GQTALSLAGIEERAG 191


>UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus
           RepID=Q81AF9_BACCR
          Length = 315

 Score = 62.8 bits (151), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 20/158 (12%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +ID ET G       I+++A+V   + ++V+     V P+RPI  +  ++  IT   V+D
Sbjct: 12  VIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSD 71

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108
            P IE+V+P +     +   VAHNASFD R          LPE   + I T+ LA++   
Sbjct: 72  APTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMK 131

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
                 +   K R L ++    L  H A  DC   AA+
Sbjct: 132 HATNHKLETLK-RMLGIR----LSSHNAFDDCITCAAV 164


>UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1
           RepID=C7RJN1_9PROT
          Length = 735

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 13/161 (8%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET G++      I++I +V +++G+++       LV P+R I P+ + IH I++ M
Sbjct: 547 VFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISDDM 606

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---PEMPGEWICTMKLARRLWPGIK 111
           V  +P IE V+P    +      VAHNA+FD R L    E  G       L   L  G+ 
Sbjct: 607 VRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSGVL 666

Query: 112 YSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM 151
           + N   ++   +  +   G+   H AL D   TA + + ++
Sbjct: 667 HPNQESHQLDSIAERLGIGIEDRHNALGDACATAEVFLKML 707


>UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria
           RepID=Q0HVL5_SHESR
          Length = 239

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 2   LRIIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL   QG   +EI +V +  G+I    S L+ P   I+        I+  M
Sbjct: 40  LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           +A      +V+  +    G    VAHNA+FD+R L         + PG++ C++ LARRL
Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159

Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
           +P  I +    L + ++L    P     HRAL D  +T  L
Sbjct: 160 YPEAINHQLATLVRHKQL----PTDGTFHRALADAEMTGHL 196


>UniRef50_Q1PZU3 Strongly similar DNA polymerase epsilon subunit (3'-5' exonuclease)
           n=1 Tax=Candidatus Kuenenia stuttgartiensis
           RepID=Q1PZU3_9BACT
          Length = 204

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 23/167 (13%)

Query: 5   IDTETCGLQGGIVEIASVDVIDGK-IVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62
           ID ET   +   V    + +I+ + IV   S L+RP +    P +  IH I+   V DKP
Sbjct: 6   IDFETANAKRSSVCSLGLAIIEEQTIVKRTSWLIRPPELYFDPFSTYIHGISAKDVEDKP 65

Query: 63  WI----EDVIPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG 109
                 +++ P   GS + VAHNASFD  VL         P  P  + CT+ +A+R+WPG
Sbjct: 66  EFYQLWDEIFPFLEGS-YLVAHNASFDMSVLCCILDVYKIPYPPLNYFCTLAIAKRVWPG 124

Query: 110 IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           +     AL K +R L ++      HH A  D    A +L+   N  G
Sbjct: 125 L--LGYALNKISRYLEIE----FKHHDAEEDAVACAKILLHAYNELG 165


>UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales
           RepID=B8FYI4_DESHD
          Length = 1447

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G       I EI  + +  GKI++     V P++PI  + + +  IT+ MV D
Sbjct: 426 VLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMVRD 485

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
              I+ V P   ++      VAHNA FD   L         +    ++ T+ LA+ L+P 
Sbjct: 486 AETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELFPD 545

Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA---LLIDIMNTSGWTAEQMADI 164
            K Y    + K   + V+       HRAL D   T     +++D++   G   E + DI
Sbjct: 546 YKTYKLGRIAKNLGIKVEVA-----HRALDDVGTTVKVFNIMVDMLKERG--VETLEDI 597


>UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas
           atlantica T6c RepID=Q15TC4_PSEA6
          Length = 769

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 24/162 (14%)

Query: 4   IIDTET---CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET   C     I EI +V VID K+V+  S L+ P+R +      +  I+  MV D
Sbjct: 606 VVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMVED 665

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARRLW 107
            P   +VI     +     +VAHN +FD                MP   +CT++  R+ +
Sbjct: 666 APLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPK--LCTVREMRKYY 723

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           PG   YS   L K   L++      +HHRAL D    A LLI
Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI 760


>UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria
           RepID=C8WX41_ALIAD
          Length = 952

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 19/160 (11%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D ET GL   +  I+EI ++ V  G+IV+    LVRP+RPI  +   +  +++A VA 
Sbjct: 5   IVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVAG 64

Query: 61  KPWIEDVIPHYYGSEWYV---AHNASFDR-----RV----LPEMPGEWICTMKLARRLWP 108
            P   + +  + G   +     H+  F+R     RV    LP  PG+ +CT+ LAR L P
Sbjct: 65  APSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILAP 124

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
            +  S+   Y  R+L ++       HRAL D      LL+
Sbjct: 125 RL-MSHRLEYLARRLRLRAEVS---HRALADARTAHQLLM 160


>UniRef50_C7M082 Exonuclease RNase T and DNA polymerase III n=1 Tax=Acidimicrobium
           ferrooxidans DSM 10331 RepID=C7M082_ACIFD
          Length = 475

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 31/173 (17%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D ET G   G   + E+A + V +G+ +  +  LV  DRPI P  +A+  I+  +VAD
Sbjct: 20  ILDVETTGAASGADELTEVAMMVVQEGRALAHLQSLVHTDRPIPPAIVALTGISNELVAD 79

Query: 61  KPWIEDVI---PHYYGSEWYVAHNASFDRR-----------VLPEMPGEWICTMKLARRL 106
            P    VI            V HN  FDR             LPE+P   + T+ L+R L
Sbjct: 80  APSARTVIERTARLLEGTVMVGHNVRFDRSFLGAAADAAGITLPEVP--VLDTLTLSRVL 137

Query: 107 W----PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
                P  + + +A Y      +Q PP    HRA+ D   T ALL  ++  +G
Sbjct: 138 LDGEVPNHRLATLAHY------LQLPP--PSHRAMADVVTTVALLHRLIERAG 182


>UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UG6_CYTH3
          Length = 449

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  IID ET G       I+EIA       KI +    L+ P+R I     ++  I   M
Sbjct: 2   MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE------MPGEW--ICTMKLARRL 106
           VAD P   DV   I  +     +VAHN +FD   + +      MP     +CT++L+R++
Sbjct: 62  VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQM 161
           +PG+  YS   L  +  ++VQ     + HRA  D   T  LL  ++  +T G+  + +
Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSL 174


>UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter
           RepID=A3JBF5_9ALTE
          Length = 483

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 22/184 (11%)

Query: 4   IIDTETCGLQGGIVEIASVDVI---DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
            +D ET G       I  + +     G+ V     LV P   ISP    +  I+ AMVAD
Sbjct: 15  FLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMVAD 74

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P  ED+   +        +VAHNA FD        RR+      + +CT+KL+RRL+P 
Sbjct: 75  APLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLYPE 134

Query: 110 IKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA--DITG 166
            +  NM AL +   L       +  HRA+ D          ++   G    + A  ++  
Sbjct: 135 FRRHNMDALIERHGLQ-----QVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICELLQ 189

Query: 167 RPSL 170
           RPS+
Sbjct: 190 RPSI 193


>UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes
           RepID=A6EU25_9BACT
          Length = 472

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 19/162 (11%)

Query: 4   IIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +ID ET G   QG + EI  + V + +IV+  S L+ P+  I     A+  IT+ MV D 
Sbjct: 10  VIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVTDA 69

Query: 62  PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110
           P   DV   I        +VAHN +FD   L +           + +CT++L+R+L PG+
Sbjct: 70  PRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIPGL 129

Query: 111 -KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
             YS   L ++  +++     L  HRA  D   T  L + ++
Sbjct: 130 PSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLL 166


>UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii
           MLHE-1 RepID=Q0A6Z2_ALHEH
          Length = 714

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57
           + D E  GL  +GG  I+ IA V V++G+++       ++ P RPI P ++  H IT+  
Sbjct: 511 VFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITDDD 570

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89
           V DKP IE V+P    + G    VAHNA+FD + +
Sbjct: 571 VQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFI 605


>UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia
           RepID=DPO3E_RICBR
          Length = 229

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 27/186 (14%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           I+DTET GL  +GG  IVEI ++++++  +     H  + P+R +  +A  IH I+   +
Sbjct: 8   ILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEFL 67

Query: 59  ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMKL 102
            DKP    I D    +      V HNA FD + L                    I T+ +
Sbjct: 68  KDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLVM 127

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQM 161
           AR ++PG KYS  AL K  K++     G   H AL D  + A + +++  T G  +A +M
Sbjct: 128 ARSMFPGSKYSLDALCKRFKVD---NSGRQLHGALKDAALLAEVYVEL--TGGRQSAFKM 182

Query: 162 ADITGR 167
            D   +
Sbjct: 183 LDKAAK 188


>UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales
           RepID=C7GFY3_9FIRM
          Length = 697

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 20/160 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G    +  I+EI +V V+ G+I    S  V P+ PI  +   +  I + MV D
Sbjct: 477 VFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMVID 536

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P IE ++P +    G    VAHNA FD         R   E     I T+ LAR L P 
Sbjct: 537 APKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILLPQ 596

Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           + ++    + K   ++++     +HHRA+ D   TA + +
Sbjct: 597 LNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFV 631


>UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes
           RepID=C0FNH3_9FIRM
          Length = 228

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 29/202 (14%)

Query: 4   IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G   +   ++EI++V V  GK+V   S LV P RPI   A  ++ I++ MVA+
Sbjct: 19  LFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMVAN 78

Query: 61  KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107
           +P    V+P +    G +  V HN  +FD + L          ++  +++ T+++A+  +
Sbjct: 79  EPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKLCF 138

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYIT-------AALLIDIMNTSGWTAE 159
           P  ++  ++ L +   ++ +       HRAL DC +        A  L  +      + E
Sbjct: 139 PEWRHRRLSDLAEHYGISTRGA-----HRALTDCKMNQQVFEYLAKELEKMPAAKKQSKE 193

Query: 160 QMADITGRPSLMTTFTFGKYRG 181
           ++    G P       FG++ G
Sbjct: 194 KICPECGLPMKKRNGRFGEFWG 215


>UniRef50_A1Y2U5 Transposase n=2 Tax=Bacteria RepID=A1Y2U5_9BACT
          Length = 275

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           ++DTET GL G   EI  + ++D      +  LVRP RPI  +A AIH+IT+AMVA  P 
Sbjct: 88  VLDTETTGL-GDDAEICEITILDVTGAPILDTLVRPTRPIPVEATAIHKITDAMVASAPS 146

Query: 64  IEDVIPHYYGS---EWYVAHNASFDRRVL 89
             +V   Y  +      VA+N +FD R+L
Sbjct: 147 WPEVAEQYAAAVAGRTVVAYNVAFDARLL 175


>UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment)
           n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM
          Length = 821

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 20/160 (12%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V + +GKI++ M   V P  PI  +   +  I ++MV D
Sbjct: 520 VFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVMD 579

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPG 109
              IE+V+P +         VAHNA FD   +               I T+ L+R L P 
Sbjct: 580 AKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLPR 639

Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           + ++    + K  K+ +     LHHHRA+ D   TA + +
Sbjct: 640 LNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYL 674


>UniRef50_C1YMP7 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1
           Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111 RepID=C1YMP7_NOCDA
          Length = 335

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 28/180 (15%)

Query: 5   IDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPI---SPQAMAIHRITEAMVAD 60
           ID ET    +G    +  V V DG +V+  + L+RP R +   S   +A+H IT A VAD
Sbjct: 8   IDFETANHDRGSACAVGLVRVRDGAVVDRYTTLIRPPRQVDFFSRHNIAVHGITAADVAD 67

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRLWP 108
            P  E     I  +      VAHNA+FD  VL +  G         E+ CT+ L+RR W 
Sbjct: 68  APSWEQAHARIVEFADGGPLVAHNAAFDMGVLRQACGHTGLSHPAWEYACTLALSRRTWS 127

Query: 109 GI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           G+   K   +  +   ++        HHHRA  D    A ++I  M   G     +AD+T
Sbjct: 128 GLPDHKLPTVCAHIGHRVT-------HHHRADADAEAAARIVIAAMERYG--TPSLADLT 178


>UniRef50_C5CA98 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Micrococcus luteus NCTC 2665 RepID=C5CA98_MICLC
          Length = 381

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%)

Query: 5   IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP----DRPISPQAMAIHRITEAMVA 59
           ID ET  G +G    + +V V DG +V+    L+RP    DR   P+ + IH ITE  V 
Sbjct: 16  IDFETANGFRGSPCAVGAVRVRDGVMVDRAEWLIRPPVGFDR-FDPRNVRIHGITEDRVL 74

Query: 60  DKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP--------EMPG-EWICTMKLARRLW 107
           D P    + D +  + G++   AHNA FD  V+         ++PG E++CT+ LARR++
Sbjct: 75  DAPRFAQVYDELADFVGTDVLAAHNAGFDVGVIESGLEVSGRDVPGLEFVCTLVLARRVY 134

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMAD 163
               Y+  +  +         PG  HH AL D    AA+L+DI    +      A+ +  
Sbjct: 135 DLPSYALPSAAREAGFT----PG-RHHDALADAEACAAILVDIARRVLGAQPADADVLPG 189

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
           +T  P+        + +G +VS +A R  G
Sbjct: 190 LTEAPAGRGVDRLMRAQGLSVSVLAPRAAG 219


>UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria
           RepID=Q0C6A4_HYPNA
          Length = 232

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 33/173 (19%)

Query: 5   IDTETCGLQGG----IVEIASVDVID----GKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
            DTET GL       I+EI +V++I+    GK       L+ P   +S   + I  IT+ 
Sbjct: 10  FDTETTGLNPNEGDRIIEIGAVEMINHIPTGKT---FRRLINPGMAVSEATIRITGITDD 66

Query: 57  MVADKPWIE-----DVIPHYYGSEWYVAHNASFD------------RRVLPEMPGEWICT 99
            + DKP  E     D    + G    VAHNASFD            R ++PE    W+ T
Sbjct: 67  HLRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPE--DRWVDT 124

Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           +++AR+ +PG   S  AL K   +++++      H AL D  + A++ ++++ 
Sbjct: 125 VQMARKRYPGAPASLDALCKRFDISLES---RTFHGALLDSQLLASVYLELLG 174


>UniRef50_D2B9E4 DNA-directed DNA polymerase n=1 Tax=Streptosporangium roseum DSM
           43021 RepID=D2B9E4_STRRD
          Length = 189

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 15/123 (12%)

Query: 4   IIDTETCGLQGG----IVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ++D ET G        I EIA V +  DG  V+    LV P R     A+ +H ITEAMV
Sbjct: 1   MVDVETTGFSPAKGDRICEIALVSLDADGTTVDEWHSLVDPRRGTG--AVHVHGITEAMV 58

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110
              P IE+V+   +        VAHN SFD R L  +PG     E +CT +LA  L PG 
Sbjct: 59  EGAPVIEEVLDEVWQRIAGRVLVAHNVSFDLRFLKVLPGSHWLTEALCTQQLAPDLIPGG 118

Query: 111 KYS 113
           K++
Sbjct: 119 KWT 121


>UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA
          Length = 412

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  IV IA V +++G+I++  S   +V P RPI  +++  H IT+ M
Sbjct: 221 VFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITDDM 280

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL 89
           V DKP    V+P    Y      VAHNA+FD + L
Sbjct: 281 VVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFL 315


>UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales
           RepID=A1SLE5_NOCSJ
          Length = 601

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 84/191 (43%), Gaps = 32/191 (16%)

Query: 4   IIDTETCG--LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G   +GG  I EI +V V  G+++     LV P   I      +  I+ +MVA
Sbjct: 32  VVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSMVA 91

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFD---RRVLPEMPG------EWICTMKLARRL- 106
           D P +E  +P    +      VAHNA FD    R   E  G      E + T +LARR+ 
Sbjct: 92  DAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARRVV 151

Query: 107 ----WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TA 158
                P  K S++A    +     T P   +HRAL D   T  +L  +M   G     T 
Sbjct: 152 SRDDAPNCKLSSLA----KAFGSTTTP---NHRALSDARATVDVLHGLMERLGGVGVHTL 204

Query: 159 EQMADITGRPS 169
           E++   + R S
Sbjct: 205 EELQTFSSRVS 215


>UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=B4S124_ALTMD
          Length = 715

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 20/159 (12%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G       I EI  V ++ GK V+    L+ P R I      +  I++ MVAD
Sbjct: 545 VVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMVAD 604

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P   +V  H   +     +VAHN +FD         R+        +CT++  RR  PG
Sbjct: 605 APLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTHPG 664

Query: 110 I-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           +  YS   L K   ++++      HHRAL D    A LL
Sbjct: 665 LSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELL 698


>UniRef50_B6IRC5 3'-5' exonuclease n=2 Tax=Alphaproteobacteria RepID=B6IRC5_RHOCS
          Length = 212

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 21/165 (12%)

Query: 2   LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVA 59
           L  ID ET   Q      I    V +G++V    +L+RP +   +P  +AIH I    V 
Sbjct: 7   LLAIDFETANEQRASACSIGLCRVENGRVVRTAEYLIRPPELRFTPFTIAIHGIRPEDVV 66

Query: 60  DKPWIEDV----IPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106
           D P   D+     P   G+   +AHNASFD  VL  M G          ++CT+  ARR 
Sbjct: 67  DAPEFPDIWDAMRPELEGA-VLLAHNASFDMSVLRAMLGTYGLAVPDHGYLCTLVAARRA 125

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           WP ++   +  +  R+  ++    L HHRA  D    AA+ +  M
Sbjct: 126 WPDLEKHRLN-HLARQFGIE----LEHHRAGSDARACAAIALRAM 165


>UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD
          Length = 1043

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +IDTET G+   +  + +IA+  +++GKIV+     V P RPI  +   +  I E+ VAD
Sbjct: 39  VIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDVAD 98

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE-MPGE------WICTMKLARRLWPGI 110
            P  E+ +     + G    VAHNA+FD+    +   GE      WI ++ LAR   P +
Sbjct: 99  APSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALPRL 158

Query: 111 K 111
           K
Sbjct: 159 K 159


>UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus
           thermophilus RepID=Q5SK39_THET8
          Length = 624

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMVA 59
            D ET GL   Q  +V +A V V+  +++       LV P RPISP A A+H +T  M+ 
Sbjct: 443 FDLETTGLDPEQDAVVALAGVHVLGRRVLRQEVFEALVNPGRPISPAATAVHGLTAEMLR 502

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFD 85
           DKP +E V+P +         VAHN +FD
Sbjct: 503 DKPPLEAVLPAFRAFVQDTVLVAHNGAFD 531


>UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010
           RepID=C0N1K0_9GAMM
          Length = 488

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 14/119 (11%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D ET G +     + EIA ++V DG +V     L+ P RPI P    +  IT+A VAD
Sbjct: 13  ILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVAD 72

Query: 61  KPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
            P  +++    +     +  VAHNA FD   L +        +  + +C++KL+R+L+P
Sbjct: 73  APTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131


>UniRef50_A1WP16 Exodeoxyribonuclease X n=4 Tax=Proteobacteria RepID=A1WP16_VEREI
          Length = 224

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 20/213 (9%)

Query: 4   IIDTETCGL-QGGIVEIASVDVIDG---KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           I  T+T GL +  IV+ A + V D     +V        P +PI   A+A H I +  +A
Sbjct: 5   IFGTKTTGLHEPAIVQAAWLMVKDPFTLTVVERFEQRYNPGKPIELGALATHHILDEELA 64

Query: 60  DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KYSNMAL 117
           D P      +P   G+E+ + H+  +D RV+   P + ICT+ LAR L   I  ++  A+
Sbjct: 65  DCPPASGFSLP--PGTEYLIGHDVDYDWRVIGAPPVKRICTLALARWLLADIDSHTQAAM 122

Query: 118 YKTRKLNVQTPPGLHHHRALYD---CYITAALLI----DIMNTSGWTAEQMADITGRPSL 170
               +    +    H H A +D   C I    L+    DI   + W  + +   + +  +
Sbjct: 123 LYLFERGSASSLLQHAHSARHDVMHCAIVLEHLLARMGDITEATTW--QTLWQRSEQARI 180

Query: 171 MTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLD 203
             T TFGK++G A S  A  D  Y  WL N  D
Sbjct: 181 PKTLTFGKHKGLATS-AAPSD--YKHWLLNQPD 210


>UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis
           subsp. lactis RepID=C6A933_BIFLB
          Length = 188

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 22/160 (13%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G       I EI +V V DGKIV+  + LV P R +S +   +  I+  M+ D+
Sbjct: 14  LDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEMLEDQ 73

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPE---MPGEWICTMKLARRLW 107
           P IED++    H+  ++  V HN  FD         RV  +        I TM + R L+
Sbjct: 74  PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDRLLF 133

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           P  ++  + L +   +       +  HRAL D   T   L
Sbjct: 134 PSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCL 168


>UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95
           RepID=A9BIM3_PETMO
          Length = 1388

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 21/177 (11%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL+     I+EI +V + + KIV+    LV+P +P+S        IT  M+  
Sbjct: 384 VFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQMLEV 443

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108
           +  IE+V+P +         VAHNA FD R + E             +I T+ L++ L  
Sbjct: 444 EKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSLLT 503

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMADI 164
              Y    + +  KL         HHRA  D  ITA + + ++  +     E ++D+
Sbjct: 504 LKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDL 555


>UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales
           RepID=C0DA77_9CLOT
          Length = 255

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 84/214 (39%), Gaps = 36/214 (16%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ID ET GL+     I EIA++ V+DG +      LV P RP+  + + +  IT+ M+A  
Sbjct: 19  IDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGMLAGA 78

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110
           P I DVI     + G    + HN  FD   L         +   E I T+ L R   PG 
Sbjct: 79  PAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFMPGE 138

Query: 111 KYSNM----ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
              N+    A Y   ++          HRA  D      L   ++   G          G
Sbjct: 139 HKKNLSAACAFYCIEQVEA--------HRAEADALSAHLLYQKLLEGRGE---------G 181

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
           R  L T  +   Y+ K    V +R   YL+ L  
Sbjct: 182 REELFTPKSL-IYKAKKEQPVTKRQKEYLQDLIK 214


>UniRef50_A8ET44 DNA polymerase III n=1 Tax=Arcobacter butzleri RM4018
           RepID=A8ET44_ARCB4
          Length = 272

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 26/188 (13%)

Query: 4   IIDTETCG---LQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            +D ET G    +G  I+E+ +V   +G++++  + LV   + I P    + +IT AM+ 
Sbjct: 85  FVDIETNGGTPKKGFQIIELGAVKYKNGEVLDSFNSLVFA-KEIPPYIQEVTKITPAMLE 143

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107
             P IE V+     + G + ++AH+  FD         +  L ++    +CT+ LA+R  
Sbjct: 144 TAPRIEKVLKDFKEFLGDDVFIAHDIKFDYNFISDSFEKYSLGKLLNRKLCTIDLAKRTI 203

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL----LIDIMNTSGWTAEQMAD 163
              KY   +L +   ++++     +HHRA YD   T  +    L +I      T E + +
Sbjct: 204 KSEKYGLSSLKELLNIDIE-----NHHRAYYDALTTQIVFEKCLKNIDTNKIKTVEDLIN 258

Query: 164 ITGRPSLM 171
            +   S++
Sbjct: 259 FSKSDSII 266


>UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55
           RepID=UPI00016C5FA2
          Length = 285

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 19/174 (10%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET        G I+EI +V + +G+IV+  S LV P+  I  +   + +IT  MV 
Sbjct: 19  VVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDMVK 78

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFD-RRVLPEMPGEWICTMKLARRLWPGIKYSNM 115
           D P+I +V+     +      VAHNASFD  R L   P      +K + ++   +  S  
Sbjct: 79  DAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLK--PALATIGIKSSHKVMDTVSLSKF 136

Query: 116 ALYKTRK------LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
                +K       +    P   +HRA+ D   TA   + +       AE++ D
Sbjct: 137 TFPDKKKHTLIDLCSYLEVPLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187


>UniRef50_Q6UAU3 Gp39 n=1 Tax=Klebsiella phage phiKO2 RepID=Q6UAU3_9CAUD
          Length = 202

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           IIDTET GL     EI  + +I+ +    ++ LV+P RPI P+A  I+ IT  MVAD P 
Sbjct: 23  IIDTETTGLMD-FDEIIEITIINMRGEILLNSLVKPSRPIPPEATKINHITNEMVADAPT 81

Query: 64  IEDVIPHYYGSEW---YVAHNASFDRRVLPE 91
             DV P      W   ++A N+SFD R++ +
Sbjct: 82  WSDVFPAVLKIIWKYKWLAWNSSFDARLMVQ 112


>UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum
           RepID=B3DQ35_BIFLD
          Length = 235

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 22/134 (16%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G       I EI +V V +G IV+    LV P RPI  Q   +  IT+AMVAD 
Sbjct: 37  LDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMVADL 96

Query: 62  PWIEDVIPHYY----------GSEWYVAHNASFDRRVLP----EMPG-EWIC----TMKL 102
             I++V+P +             E  V HN SFD R L      + G  + C    TM++
Sbjct: 97  DPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDTMQI 156

Query: 103 ARRLWPGIKYSNMA 116
           +R L+P  ++  +A
Sbjct: 157 SRALFPAQRHHRLA 170


>UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6
           Tax=Rhodobacteraceae RepID=DPO3E_RHOCA
          Length = 704

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   GG  IV+IA+V +++G+ V       LV P RPI   + A+H ITEAM
Sbjct: 512 VFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITEAM 571

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL 89
           VA  P I +V   ++        VAHNA FD   L
Sbjct: 572 VATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFL 606


>UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM
           15436 RepID=C0W1U9_9ACTO
          Length = 206

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 23/170 (13%)

Query: 5   IDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           +D ET GL     I E+A+V    G++V   S LV P R I      +  I   +VAD P
Sbjct: 20  VDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVADAP 79

Query: 63  WIEDVIPHY-----YGSEWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARRLWP 108
            + +V+P +     +     +AHNA FD R L     ++  EW     I T+  +R L P
Sbjct: 80  TLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRALLP 139

Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTS 154
             +  N  L        ++ P   + HRAL D Y    L   L+D+++ +
Sbjct: 140 RPQVQNHRLGTLAHHFGIKNP---NAHRALADAYTCLELYKCLLDVLHAA 186


>UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3
           Tax=Betaproteobacteria RepID=A1K872_AZOSB
          Length = 734

 Score = 59.7 bits (143), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  I++I +V V++GK +       L+ P RP+  ++  +H IT  M
Sbjct: 546 VFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITADM 605

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89
           +A +P IE V+P ++        VAHNA+FD R L
Sbjct: 606 LAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFL 640


>UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
           29149 RepID=A7B5W2_RUMGN
          Length = 219

 Score = 59.7 bits (143), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 20/160 (12%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G+      I+EI++V V  G + +  S LV P R I  QA  ++ IT+ MV++
Sbjct: 17  VFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMVSE 76

Query: 61  KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARRLW 107
            P I + +  +    G +  V HN  SFD + +           +  ++I T+ +AR+  
Sbjct: 77  APLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARKCL 136

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           P +K+  +         + +      HRAL DC +     
Sbjct: 137 PELKHHRLTDL-AEHFGISSKGA---HRALNDCVMNQKCF 172


>UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria
           RepID=B1Y7R5_LEPCP
          Length = 731

 Score = 59.7 bits (143), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL       I++I +  +  GK+    S   LV P RPI P  + IH I   M
Sbjct: 543 VFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKPDM 602

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL 89
           VA +P I+ V+P ++        VAHNA+FD R L
Sbjct: 603 VAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFL 637


>UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola
           RepID=DPO3E_BUCBP
          Length = 245

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 34/170 (20%)

Query: 4   IIDTETCGLQGG--------IVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRIT 54
           ++D ET G+           I+EI +V++I+     N     ++P+R I  Q+  IH IT
Sbjct: 9   VLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGIT 68

Query: 55  EAMVADKPWIEDV---IPHYYGSEWYVAHNASF--------------DRRVLPEMPGEWI 97
           +  + DKP   ++      Y  +   + HNA F              D+R + +     +
Sbjct: 69  DNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCN-VV 127

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            T+ LAR+L+PG K S  AL    K+NV        HR  +   I A LL
Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVS-------HRDFHSALIDAKLL 170


>UniRef50_C9RIV2 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RIV2_FIBSS
          Length = 188

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 22/148 (14%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G  G    I+EI  + ++DG +IV     LV P +PI+P    +  IT+ MV+
Sbjct: 6   VVDLETTGGHGEDNRIMEIG-IALMDGSEIVETYHALVDPGKPITPFVRELTGITDEMVS 64

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWP 108
            +P    +  H         +VAHN  FD        +R   +     +CT+KL+RR++P
Sbjct: 65  GQPQFGVIAEHVAALLQDRIFVAHNVQFDCKYMTAELKRCCIKFNPARLCTVKLSRRVFP 124

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHR 135
           G   YS   L ++  L     P  +HHR
Sbjct: 125 GQPSYSLHKLTESLGL-----PDFNHHR 147


>UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3
           Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB
          Length = 1411

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 21/166 (12%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA- 59
           I D ET GL      I+EI +V + +G++++     + P  P+S   + +  IT+ MV  
Sbjct: 394 IFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMVQA 453

Query: 60  --DKPWIEDVIPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
             D+  +      +YG++    HN  FD         R   PE+    + T++++R L P
Sbjct: 454 ADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLLHP 513

Query: 109 GIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
             + S   L    RK NV      HHHRA  D   T  L+  +++ 
Sbjct: 514 --EQSRHTLDSLCRKYNVALE---HHHRANQDAEATGYLMFKLLDA 554


>UniRef50_UPI0000D530A7 DNA polymerase III subunit epsilon n=1 Tax=Psychroflexus torquis
           ATCC 700755 RepID=UPI0000D530A7
          Length = 226

 Score = 59.3 bits (142), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 19/165 (11%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           I+D ET GL   +G  I+EI  V++   ++ +     + P + ++ + + IH IT   + 
Sbjct: 5   ILDIETTGLDYKEGHRIIEIGCVELNQKEVGSNFHQYINPLKTLTDENIKIHGITNEFLE 64

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWIC-TMKLARRL 106
           DKP  EDV   +         +AHNA+FD   L         P++  + I  T+ +AR  
Sbjct: 65  DKPLFEDVADKFLNFIKDSQIIAHNANFDVGFLNYELEKVSKPQIAKDRIVDTVVIARNR 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +PG + +  AL K  KL V +      H AL D  I   + +++ 
Sbjct: 125 FPGQQVNLDALVK--KLKVNSLVDREFHGALKDAKILTDVYLELQ 167


>UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma
           RepID=Q2NJG3_AYWBP
          Length = 1572

 Score = 59.3 bits (142), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 29/182 (15%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL   +  I+EIA + + +G  +      + P + ++     I  IT+ M+  
Sbjct: 483 VFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEMLQG 542

Query: 61  KPWIEDVIPHYYGSE---WYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108
           +  I+ V+P +         VAHNASFD   L E          P   I TM L++R + 
Sbjct: 543 QQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRYFS 602

Query: 109 G-IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
             +KY ++  L    K+ ++      HHRAL D   T+ + I ++       +Q+AD T 
Sbjct: 603 NLLKYFSLKRLATVFKVKLED-----HHRALADATATSEIFIKMI-------DQLADPTK 650

Query: 167 RP 168
            P
Sbjct: 651 DP 652


>UniRef50_Q0A739 Putative PAS/PAC sensor protein n=3 Tax=Ectothiorhodospiraceae
           RepID=Q0A739_ALHEH
          Length = 729

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL       IV IA V +++G++++      LV P R I   ++  H I +  
Sbjct: 538 VFDTETTGLSPAEGDEIVSIAGVRMVNGRLLDGERFEQLVNPGRTIPRSSILFHGIHDTT 597

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL 89
           VADKP IE V+P ++   G    VAHNA+FD + +
Sbjct: 598 VADKPRIETVLPRFHTFVGDSVLVAHNAAFDMKFI 632


>UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23
           RepID=B7A7U0_THEAQ
          Length = 627

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            D ET GL   +  I+ + +V ++  +++       LV P RPI   +  +H +T  M+ 
Sbjct: 446 FDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTWEMLK 505

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEWICTMKLARRLWPGIKY 112
           DKP +E+V+P +         VAHN +FD    R+V  + P   + T+ LA  L+P +K 
Sbjct: 506 DKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQP-PLVDTLLLAHLLFPDLKD 564

Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITA---ALLIDIMNTSGW 156
             +     R   V   P L  H AL D  +TA   A +I ++   G+
Sbjct: 565 HRLERLAER-FGV---PVLGRHTALGDALMTAEVYARMIPLLKERGF 607


>UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae
           RepID=C7NEP7_LEPBD
          Length = 1459

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 20/164 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V +   +++   S  V P+ PI  +   +  IT+ MVA+
Sbjct: 427 VFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEMVAN 486

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
              IE V+P +         VAHNA FD   +         E     I T+ LAR L P 
Sbjct: 487 AEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTLLPE 546

Query: 110 IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++   +A L K   + ++T     HHRA+ D   TA +    +N
Sbjct: 547 LRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLN 585


>UniRef50_Q7UJ56 Probable DNA polymerase III polC-type n=1 Tax=Rhodopirellula
           baltica RepID=Q7UJ56_RHOBA
          Length = 355

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 25/171 (14%)

Query: 5   IDTETCGLQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPI--SPQAMAIHRITEAMVADK 61
           ID ET   +     ++A+V V  G+IV+    L+RP RP   SP  + IH IT  MV ++
Sbjct: 6   IDFETATRRSDSACQLAAVRVRGGEIVDSACWLIRP-RPFVFSPANIQIHGITPGMVREE 64

Query: 62  PWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107
           P   ++ P      G +  +AHNASFD  VL           P+M  ++ CT  +ARR W
Sbjct: 65  PEFGELWPEIQSTLGDDCLIAHNASFDLGVLMACLESHDHPVPDM--QYSCTRAIARRTW 122

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           P         +  + L+        HH AL D    A + +     SG T+
Sbjct: 123 P-----QQPRFGLKPLSDWLGIRFRHHDALEDSIACAKIALAAAEDSGATS 168


>UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales
           RepID=C7PV18_CHIPD
          Length = 456

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEA 56
           M  I+D ET G      GI EIA + + DG+ IV     L+ P  PI     ++  IT+ 
Sbjct: 1   MYAIVDIETTGGHASANGITEIA-IYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDE 59

Query: 57  MVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARR 105
           MVA+ P  ++V    +     + +VAHN +FD   +         ++  + +CT++L R+
Sbjct: 60  MVANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRK 119

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           + PG+  YS   L K+ +++V        HRA  D   T  L 
Sbjct: 120 IIPGLPSYSLGNLCKSLEISV-----TQRHRAAGDAAATVKLF 157


>UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes
           RepID=A0LZ46_GRAFK
          Length = 457

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 20/162 (12%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G    + GI EIA       K+V+    LV P++PI P  + +  I   M
Sbjct: 1   MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           + + P   +V   I         VAHNA FD R+L         E   + +CT++L+++L
Sbjct: 61  LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            PG+  YS   L   R L +   P    HRA  D   T  L 
Sbjct: 121 IPGLPSYSLGKL--VRSLGI---PLSDRHRAAGDAQATIKLF 157


>UniRef50_D1N3T8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Victivallis
           vadensis ATCC BAA-548 RepID=D1N3T8_9BACT
          Length = 205

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 22/130 (16%)

Query: 1   MLRIIDTETCGLQGGIVEIASVDVIDG-KIVNPMSHLVRPDRP---ISPQAMAIHRITEA 56
           M+  +D ET     G V    +   DG +I      L+RP R     S   +A+H IT  
Sbjct: 1   MILALDFETANSDPGSVCAVGLAWFDGARITGSWESLIRPHRSCRWFSRLNIAVHGITPE 60

Query: 57  MVADKPWIEDV----IPHYYGSEWYVAHNASFDRRVL-----------PEMPGEWICTMK 101
           MVA  P   DV     PH+ GS   +AHNA+FD  VL           PE   ++ CT K
Sbjct: 61  MVAQAPEWGDVWPELAPHFAGSM-VIAHNAAFDVPVLLRTLELYGFAPPEF--DFFCTCK 117

Query: 102 LARRLWPGIK 111
            ARR+WPG++
Sbjct: 118 SARRVWPGLE 127


>UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1MZX4_9GAMM
          Length = 738

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%)

Query: 4   IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I+D ET G    Q  + E+  V V++G+IV+    L+ P R I      +  I+  MV++
Sbjct: 575 IVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMVSN 634

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P  +DV   I  +     +VAHN +FD         R+        +CT++++R+  PG
Sbjct: 635 APVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYLPG 694

Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
              YS   L     ++++     +HHRAL D    A
Sbjct: 695 HSSYSLGKLCAALDIDLE-----NHHRALDDAKAAA 725


>UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J5B5_DESRM
          Length = 930

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 15/159 (9%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL   Q  I+EI  V ++DGK ++  S L+RP   +  +   +  I +  + D 
Sbjct: 7   LDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHELQDA 66

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGIKYS 113
           P +++V+P    +      V HN  FD   L       +      T++L++ L PG    
Sbjct: 67  PKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGASNH 126

Query: 114 NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            +  Y    L +  P   + HRAL D    A LLI ++N
Sbjct: 127 RLG-YLCSYLGIDIP---NQHRALDDARGAAMLLIHLLN 161


>UniRef50_B8F0B3 Exonuclease RNase T and DNA polymerase III n=2 Tax=Thauera sp. MZ1T
           RepID=B8F0B3_THASP
          Length = 201

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           I+DTET GL G   E+  + VID      +  LVRP  P+  +A AIH IT+AM+A  P 
Sbjct: 24  ILDTETTGL-GDDAEVVELAVIDCAGAVLLDTLVRPSGPVPAEAAAIHGITDAMLAGAPT 82

Query: 64  IEDVIPHYYG---SEWYVAHNASFDRRVLPEM-----------------PGEWICTMKLA 103
             ++   + G       V +N  FD RV+ +                  PG   C M+ A
Sbjct: 83  WSELHARFCGLVEGRQVVIYNHEFDVRVISQTARRYGLQAPQGFDQVLDPGRIHCAMQ-A 141

Query: 104 RRLWPGIKYSNMALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTS 154
              + G   +    Y+ +KL+     Q     + HRAL DC +T  ++  + +T 
Sbjct: 142 YAEFRGEWSAEKGQYRWQKLSAAAQQQGVTVENAHRALGDCLMTLGVVRAMASTG 196


>UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO
          Length = 465

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 21/173 (12%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAMV 58
           + D+ET GL      +V++ +V V++GKI+       LV P R I P + A+H+I++AMV
Sbjct: 275 VFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISDAMV 334

Query: 59  ADKPWIEDVIPHYYGSEWY---VAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107
           AD P  +     ++    +   VAHNA FD   L     +         + T+ L+  ++
Sbjct: 335 ADAPGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHLSAVVF 394

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA---ALLIDIMNTSGWT 157
            G     +     R LNV  P  +  H  L D   TA     LI ++   G+T
Sbjct: 395 GGSAEHTLDALCDR-LNVHIPDDV-RHTGLGDALATAKALVALIPVLEARGFT 445


>UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria
           RepID=A1K1I0_AZOSB
          Length = 231

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 20/166 (12%)

Query: 4   IIDTETCGL--QGGI--VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           +ID ET G+  + G    EIA V V +G +++    L+     +  +  A+  IT AMV 
Sbjct: 33  VIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAMVR 92

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDR--------RVLPEMPGEWICTMKLARRLWP 108
             P +  V+     + GS   VAHNA+FDR        R+      +++C++ L+RR++P
Sbjct: 93  AAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRVFP 152

Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
                 +  L +T  L    P     HRAL D   TA L   I +T
Sbjct: 153 DSPNHKLGTLVRTLGL----PASGRFHRALADAEATAQLFARIAHT 194


>UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SK59_9BACT
          Length = 228

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  +IDTET GL      I+ +A+V V + KI++  +  + P+  I  +++  H IT+ M
Sbjct: 44  VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-PEMPGEWICTMKLARRLWPGIKYS 113
           VADKP   +V+P   ++      V H+ +FD +++  EM   + C +     L   + YS
Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQIN-NNWLDTMLIYS 162

Query: 114 NMALYKTRKLNVQTPPGLHH------HRALYDCYITAALL 147
           +  + K  + ++     L++      H AL D   TA + 
Sbjct: 163 HAIIKKDERYSLDYLLDLYNVTCNGRHTALGDALATAEVF 202


>UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C36AB7
          Length = 264

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 26/159 (16%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G+   +  I+EI+++ V + + V   S LV P RPI   A  ++ IT+ MV  
Sbjct: 60  VFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMVQS 119

Query: 61  KPWIEDVIPHYY---GSEWYVAHN-ASFDRRVLPEMPGE---------WICTMKLARRLW 107
           +P +E ++P +      E  + HN  SFD   L     E         +I T+ +AR L 
Sbjct: 120 EPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARALL 179

Query: 108 PGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYIT 143
           PG+   + +++A Y      + +      HRA  DC + 
Sbjct: 180 PGLSRHRLTDLADY----FKISSEGA---HRAFNDCVMN 211


>UniRef50_Q2QCR8 Putative uncharacterized protein n=1 Tax=Pseudomonas sp. CT14
           RepID=Q2QCR8_9PSED
          Length = 197

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           ++DTET G+  G  E+  + ++D      ++ L+RP +PI  +A  IHRIT  MVA  P 
Sbjct: 15  LLDTETTGVGDGD-EVCEITILDASGTPLLNTLIRPTQPIPAEATGIHRITNDMVATAPA 73

Query: 64  IEDVIPHY---YGSEWYVAHNASFDRRVLPE 91
             ++   Y         VA+NASFD R+L +
Sbjct: 74  WPEIAEQYASIVSGRTVVAYNASFDERLLSQ 104


>UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM
           4252 RepID=D0MIT4_RHOM4
          Length = 616

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  I+ I +V ++ G+I        LV P RPIS  ++ +H I   +
Sbjct: 424 VFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQPVL 483

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFD 85
           + DKP IE+V+P +Y        V HN +FD
Sbjct: 484 LQDKPPIEEVLPRFYRFARDTVLVGHNVAFD 514


>UniRef50_C6XJL2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Hirschia baltica
           ATCC 49814 RepID=C6XJL2_HIRBI
          Length = 298

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 32/173 (18%)

Query: 4   IIDTETCGL---QGGIVEIASVDV---IDGKIV---NPMSHLVRPDRPISPQAMAIHRIT 54
           +IDTET GL   +  ++EIA V      +GK+V     +    +P  PIS +   +  IT
Sbjct: 44  LIDTETTGLDYREAELIEIALVPFEYSTEGKLVTFGKALDQFQQPKSPISEEITKLTGIT 103

Query: 55  EAMVA----DKPWIEDVIPHYYGSEWYVAHNASFDR----RVLPEMPGE-WICTMKLARR 105
             MVA    D P +E +I     S+  +AHNA+FDR    R+ P    + W C++     
Sbjct: 104 NEMVAGQKIDIPAVEQLIKE---SDLIIAHNAAFDRPFAERLTPAFKAKPWACSL----- 155

Query: 106 LWPGIKYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTSG 155
               I +     Y++ KL+ +    G ++  HRA  DC+ T  LL   + TSG
Sbjct: 156 --VDIDWKEEG-YESPKLSFLAMEHGFYYKAHRADIDCWATIKLLAQRLKTSG 205


>UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae
           RepID=C8NZK8_ERYRH
          Length = 1433

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 5   IDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL      I+E   V + +G++V  M   ++   P+ P    +  IT+A + + 
Sbjct: 388 FDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADLVNA 447

Query: 62  PWIE---DVIPHYYGSEWYVAHNASFD--------RRVLPE-MPGEWICTMKLARRLWPG 109
           P IE   D I  + G    VAHNA FD        RR+  E +    I T+ L+R L+  
Sbjct: 448 PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRALFDN 507

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169
            +   +     R + +    G+  HRA YD  + + + ++++     +   M  I    S
Sbjct: 508 RRSYRLGSI-ARFMRIGYDEGV-AHRADYDAEVLSLVFLEMLRLEQLST--MQTIDDLQS 563

Query: 170 LMTTFTFGKYRGKAVSDVAE 189
           L    +F K R    + +A+
Sbjct: 564 LNNESSFKKLRKSHCTVIAK 583


>UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF
          Length = 1465

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 19/160 (11%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA-MVA 59
           + D ET GL      +++IA+  +  G IV      + P  P+S     +  IT+  +  
Sbjct: 429 VFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHLQG 488

Query: 60  DKPWIE--DVIPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
            KP +        +      VAHNASFD         R  LP++    I T++ AR L+P
Sbjct: 489 AKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLYP 548

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
             K   +    T++  V      HHH A YD   T  LL 
Sbjct: 549 EYKRHGLGPL-TKRFQVSLD---HHHMANYDAEATGRLLF 584


>UniRef50_B2HWM0 DNA polymerase III, epsilon subunit n=1 Tax=Acinetobacter baumannii
           ACICU RepID=B2HWM0_ACIBC
          Length = 209

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPD----------RPISPQAMAIHRI 53
           I+DTET   +   +EIA V V     ++     V  D           PIS  AMA+H I
Sbjct: 5   ILDTETSDFEKFPIEIAHVPV---SFLDSGELFVDKDACFDEYFSCPEPISFGAMAVHHI 61

Query: 54  TEAMVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWP 108
            E  +ADKP  E   +P     ++ + HN  +D R +      +  + ICT+ L+R +WP
Sbjct: 62  LETDIADKPSYETFRLPK--DVQYIIGHNVDYDLRAIKLADKSVNAKSICTLALSRLVWP 119

Query: 109 GIKYSNMAL-YKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSG 155
              ++  AL Y     +V+    + + H A  D  +TA LL  I    G
Sbjct: 120 DAAHNLSALIYMLSNGSVKARESIRNAHNAKQDVLLTAVLLKQICKALG 168


>UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis
           ATCC BAA-548 RepID=D1N2X3_9BACT
          Length = 185

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I D ET G+   +  IVE+A+V V     ++    LV P   I  QA+A+H IT+ MVA 
Sbjct: 11  IFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMVAG 70

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
            P    +      +      VAHNA FD         R  LP   G+ + +++L +  +P
Sbjct: 71  APSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTTFP 130

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            +   N+   +     ++T  G++ HRA  D   T  +L
Sbjct: 131 NLPSYNLQSLRA-YFQLETEKGMNAHRAGADVEWTRQVL 168


>UniRef50_B3XRZ2 DNA polymerase III, epsilon subunit n=1 Tax=Lactobacillus reuteri
           100-23 RepID=B3XRZ2_LACRE
          Length = 283

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 24/158 (15%)

Query: 5   IDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +DTET GL       I++++++  ID K+V+    L+ PD   +  A +++ I+E+ + +
Sbjct: 18  VDTETTGLYPMYGDKIIQLSAIKYIDDKLVDTFDTLINPDGS-NNNAKSVNNISESSLKN 76

Query: 61  KPWIEDVIPHYYGSEW---YVAHNASFDRRVLP-------EMPGEWICTMKLARRLW--P 108
           +P  ++VI  +        +V HN SFD   L              + T+++AR ++   
Sbjct: 77  QPTFDEVIGDFVNFVEDLPWVGHNLSFDFSFLKSEELKIASFKKNSVDTLQIARSIYGNK 136

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
           G K   +A    +K N+      + H +LYD  I A+L
Sbjct: 137 GNKLQQLA----KKFNIDYK---NLHNSLYDAQIAASL 167


>UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae
           RepID=A0M4R6_GRAFK
          Length = 507

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 16/155 (10%)

Query: 5   IDTETCGLQGG-IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           I+T   G++G  I EI  + V +GK+++  S LV P + I      +  I + MV + P 
Sbjct: 11  IETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMVFNAPQ 70

Query: 64  ---IEDVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLWPGIKY 112
              I D I        +VAHN +FD  ++         +   + +CT++L ++L PG+  
Sbjct: 71  FSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLIPGLFS 130

Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            ++    T  +N+   P +  HRA  DC  T  L 
Sbjct: 131 YSLGNICT-SINI---PHIDRHRAKGDCDATVTLF 161


>UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus
           RepID=C6D2T0_PAESJ
          Length = 1437

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I+E+A V + +GK V+  S  + P   I      +  I + MV D
Sbjct: 423 VFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMVKD 482

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108
            P +E  +     + G    VAHNA FD            +P++    + T++LAR L P
Sbjct: 483 APELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFLHP 542

Query: 109 GIKYSNMALYKTRKLNVQTPPGL-HHHRALYDCYITAALLIDIMNTSG 155
            +K      ++   L+ +    L +HHRA+ D      +L  ++N + 
Sbjct: 543 TMKN-----HRLNTLSAKYKVSLDNHHRAVDDSVALGGVLFGLINDAA 585


>UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus
           RepID=C7RGM9_ANAPD
          Length = 1365

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL   +  I EI +  V  GKI    + LV P+  I  + + I  IT  MV D
Sbjct: 351 VFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMVKD 410

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P IE+V+P +         V  N  FD         R+  +    ++ T+ +AR L+  
Sbjct: 411 CPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALFSD 470

Query: 110 IKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           +K    +L K  RKL +   P  +HHRA  D   TA + I +
Sbjct: 471 MK--KFSLDKIARKLEI---PAFNHHRASDDARATAQIFIKM 507


>UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K987_THASP
          Length = 482

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  ID E+ G   ++  I EIA + V DG++V     LV P +PI P    +  I++AMV
Sbjct: 7   LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66

Query: 59  ADKPWIE---DVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107
           A+ P  E   D +        +VAH+A FD         R+  E     +CT+KL+R L+
Sbjct: 67  AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126

Query: 108 P 108
           P
Sbjct: 127 P 127


>UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia
           complex RepID=A0K8A7_BURCH
          Length = 212

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 4   IIDTETCGLQGGI----VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET GL   +     EIA + + +G++V+    L+   R I    +A+  IT  M+A
Sbjct: 13  VLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDMIA 72

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARRLWP 108
             P   +V+     + G    VAHNA FD+R      G         + CTM +ARR++P
Sbjct: 73  TAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRIYP 132

Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
             +   + +L +  +L    P     HRA+ D  +   L
Sbjct: 133 DARSHRLSSLAEMLRL----PQTGRAHRAMVDAEMAGHL 167


>UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae
           RepID=A7HNS3_FERNB
          Length = 1390

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      I+EI +V   DGK+++     VRP++ ++ +++ I  ITE M+ D
Sbjct: 385 VLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDMLKD 443

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
            P I  V+P    +      VAHNA FD   L         E    +I T++L++ L   
Sbjct: 444 APDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL-- 501

Query: 110 IKYSNMALYKTRKLNVQTPPG-LHHHRALYDCYIT 143
              + +  +   KL      G   HHRAL D  +T
Sbjct: 502 --RNKIKSFSLDKLVDHFGLGAFQHHRALDDARVT 534


>UniRef50_B4TI94 Exonuclease n=2 Tax=root RepID=B4TI94_SALHS
          Length = 198

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 38/173 (21%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP- 62
            IDTET GL G   EI  + +ID      ++ LV+P +PI  +A+AIH IT  MVA  P 
Sbjct: 26  FIDTETTGL-GDDAEIVEICIIDSHGFILLNTLVKPTKPIPDEAIAIHGITNEMVAYAPA 84

Query: 63  W------IEDVIPHYYGSEWYVAHNASFDRRVL---------PEMPGEW------ICTMK 101
           W      +E++I  +     +V +NA +D R++         P     W      +C MK
Sbjct: 85  WTDICGAVEELIRRF----GFVIYNADYDLRLIRQTYALNGRPSEGAPWMLAAHSVCAMK 140

Query: 102 L--ARRLWPGIKYSNMALYKTRKL-NVQTPPGL----HHHRALYDCYITAALL 147
           L    R  PG KY     YK  KL +     G+      HRAL DC +T  ++
Sbjct: 141 LYAEYRGEPG-KYHG---YKWHKLVDAAAHEGVVIEGKAHRALADCKMTLGVI 189


>UniRef50_C4Z427 DNA polymerase n=2 Tax=Bacteria RepID=C4Z427_EUBE2
          Length = 233

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL      I+E+    V DG+I    S LV P   +S +   +  I    +  K
Sbjct: 8   LDIETTGLNPAVDRIIEVGMARVEDGQITQKYSTLVYPGISVSERITELTGIHNEELTGK 67

Query: 62  PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWPGI 110
           P IED+   I  + G    + HN  FD   L +        +  + I T+KLARR+ P +
Sbjct: 68  PRIEDIIGEITEFIGDWPVLGHNVIFDFSFLKKAAVNNGLTINDDGIDTLKLARRILPEV 127

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           ++ +++ +  +  N+   PG   HRA YD  ++A+LL
Sbjct: 128 EHKSLS-FLCQYFNID--PG-RSHRA-YDDAVSASLL 159


>UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO
          Length = 238

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 32/171 (18%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58
            IDTET G        I+E  +V+VID +I  N +     P+  +   A+AIH +T   +
Sbjct: 14  FIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGLTNEFL 73

Query: 59  ADKPWIED----VIPHYYGSEWYVAHNASFD---------------RRVLPEMPGEWICT 99
           ADKP  ED    +I    G+E  + HNA+FD                  L +   + + +
Sbjct: 74  ADKPLFEDKVDEMIEFLRGAE-VIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAKIVDS 132

Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           + LAR+  P  K +  AL K  ++        + HR  +   + + LL D+
Sbjct: 133 LDLARKKHPLQKNNLDALCKRYQIR-------NDHRTFHGALLDSELLADV 176


>UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus
           moniliformis DSM 12112 RepID=D1AWZ0_STRM9
          Length = 1465

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 23/179 (12%)

Query: 4   IIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G   +   I+EI +V + +GK+++  S  V P   I  + + +  I + MV D
Sbjct: 406 VFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMVKD 465

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
              I+ V+P    +      VAHNA FD   +         E    +I T++ ++ L   
Sbjct: 466 SDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILVDD 525

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMADIT 165
           +K  N+    T++ N++     +HHRA+ D   TA L   L+ +++ +G   E++ D++
Sbjct: 526 VKRFNLDTL-TKRFNIKLE---NHHRAVDDANATAELFKKLLSLVSANG--VEKLTDVS 578


>UniRef50_B0G161 DNA polymerase III, epsilon subunit n=1 Tax=Dictyostelium
           discoideum RepID=B0G161_DICDI
          Length = 483

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 6   DTETCGLQGG--IVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           D ET G+     I+EI +V++IDG +         +P   I P +  IH++T   +   P
Sbjct: 305 DLETSGVTSSDTIIEIGAVELIDGCRTGVIFQSYAQPKAQIHPVSEQIHQLTSLQLMSAP 364

Query: 63  WIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW----------ICTMKLARRLWPG 109
            IE ++  +    G+   VAHN +FD+R+L +    +           CTMK  ++++ G
Sbjct: 365 PIEIILASFMDWVGNSPLVAHNLAFDKRILIQELIRYNIPFNIDHICFCTMKYFKKIYNG 424

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL 146
           + YS  ++  ++KL +        H AL D  I A +
Sbjct: 425 LNYSLDSI--SQKLKINKLLLRKTHGALIDSEILAII 459


>UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division
           WS3 bacterium RepID=Q2Z0D2_9BACT
          Length = 965

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G+      I+E+ +V V+DG++ +     V P  PI    + +  I++A VA  
Sbjct: 31  LDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADVAGA 90

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY 118
           P I++V+P    + G    VAH+A FD   L E  G         R   PG+      ++
Sbjct: 91  PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAG--------GR---PGLLVGRGGVF 139

Query: 119 KTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
            T  L     P L +HR       TAA   DI
Sbjct: 140 DTLPLTRALLPRLPNHR-----LATAARFFDI 166


>UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae
           RepID=Q2GJZ1_ANAPZ
          Length = 244

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%)

Query: 4   IIDTETCGLQ--GG--IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58
           ++DTET GL   GG  I+EI  V+++D  +   + H  + P+R IS  A  +H IT   +
Sbjct: 7   VLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRESL 66

Query: 59  ADKP---WIEDVIPHYYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARR 105
              P    + D +  +      V HNA FD R L            +    + T+++AR+
Sbjct: 67  IGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMARK 126

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            +PG+  S  AL K  + N+ T      H AL D  + A + ++++ 
Sbjct: 127 KFPGMPASLDALCK--RFNISTQER-KFHGALKDATLLARVYVELLE 170


>UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae
           RepID=B4S8Q4_PROA2
          Length = 180

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)

Query: 5   IDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +D ET GL       ++E+A+V +++G I      L+  + PI      IH IT  ++A 
Sbjct: 16  VDVETTGLSPRRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTVVQKIHGITPELLAG 75

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
           +   E V P +    GS   +AHNA FD        R +   +     CT+  +R+ +P 
Sbjct: 76  EKPPEAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLAFSRKKFPQ 135

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +K   +     R +    P G+  HRA  D  +TA +   I NT 
Sbjct: 136 LKNHKLE-NVARHVLGGMPKGIKLHRASGDALLTAMIWQVIENTQ 179


>UniRef50_A0K225 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria
           RepID=A0K225_ARTS2
          Length = 406

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 4   IIDTETCGLQGGIVEIASVDVI----DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET GL  G   IA + V+    DG + N    LV P R + PQ   IH I  A + 
Sbjct: 7   VVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQH--IHGIRAADIL 64

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGE---WICTMKLARR 105
             P   D+   +         VAHN  FD R +         E+P E    +CTMKLARR
Sbjct: 65  HAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMKLARR 124

Query: 106 LWPGIKYS 113
             PG   S
Sbjct: 125 YLPGAGRS 132


>UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2
           RepID=C0A8I6_9BACT
          Length = 197

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 22/164 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
           L I D ET G       I++IA+V ++DG+I +   S  V P RP+      +  IT+A 
Sbjct: 3   LVIFDLETTGFSPRWNDIIQIAAVRLVDGRISDETFSTYVSPRRPVPDHITELTGITDAD 62

Query: 58  VADKPWIEDVIPHY------YGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMK 101
           VAD P   D +  +       G    VAHN   FD R          LP  P  +I ++ 
Sbjct: 63  VADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLPMRPIRFIDSIW 122

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTP-PGLHHHRALYDCYITA 144
           L+++LWP     N+ +   R L ++T   G   H A  D ++ A
Sbjct: 123 LSKKLWPAESLHNLDVIVER-LGIETGITGHRRHDARADVHLLA 165


>UniRef50_A0JY37 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Micrococcaceae
           RepID=A0JY37_ARTS2
          Length = 337

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 5   IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP----DRPISPQAMAIHRITEAMVA 59
           ID ET  G +G    +    V  G +V   S L+RP    DR      + IH I    VA
Sbjct: 8   IDFETANGFRGSPCAVGLSKVRGGVVVEEASWLMRPPEDHDR-FDYHNVRIHGIRPEDVA 66

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDRRVL------PEMPG---EWICTMKLARRLW 107
             P   ++ P    + G +   AHNA+FD  V+        +PG   +++CT+ L+RR +
Sbjct: 67  GLPRFGELFPEIGAFIGGDVLAAHNAAFDLGVIRSALEVSGLPGPAYDYVCTVMLSRRCY 126

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAE 159
             +  SN   Y   +  V   P ++HH A  D    A +LIDI   N +G  AE
Sbjct: 127 SLV--SNSLPYAAEEAGV---PLVNHHDAAEDARACAGILIDIARRNGAGSIAE 175


>UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5
           Tax=Leuconostocaceae RepID=Q04F80_OENOB
          Length = 1437

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 22/161 (13%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I D ET GL      I+++++V + +G +++     + P  P+S Q + +  IT+ +V +
Sbjct: 412 IFDIETTGLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTGITDDLVKN 471

Query: 61  -KPWIE--DVIPHYYGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMKLARRLW 107
            KP  E   +   +Y       HN   FD            LP++    I T+ LAR L+
Sbjct: 472 SKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARWLY 531

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           P   +Y+   L K   +N++     HHHRA+ D   T  LL
Sbjct: 532 PNFGRYTLDFLSKKFSVNLE-----HHHRAIDDSTATGMLL 567


>UniRef50_C8P2F2 Gram-positive family DNA polymerase III, alpha chain n=1
           Tax=Erysipelothrix rhusiopathiae ATCC 19414
           RepID=C8P2F2_ERYRH
          Length = 200

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +ID ET G       I E++++   + K V+  S LV+PD  I P  + +  ITE MV+D
Sbjct: 17  VIDLETTGRSNKFEDITELSAIKYRNYKQVDAFSTLVKPDNSILPFVVELTGITEEMVSD 76

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108
            P I+ VI  +    G++  + HN  FD  ++ +         M  +++ T++++R L  
Sbjct: 77  APKIDQVIKQFVDFIGTDVILGHNVMFDYGLVYDAYLATVGLRMHNDYVDTLRVSRLLNK 136

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
             K   +        +V+   G   HR   DC  TA + I
Sbjct: 137 DSKNHKLETL-CAYFDVERLVG---HRGSEDCLQTAEVYI 172


>UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA
          Length = 231

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 38/234 (16%)

Query: 6   DTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           DTET G++     ++E+A  D +  +       L+ P  PI P+A AIH IT+ MVA+ P
Sbjct: 7   DTETTGIKADRDYVIELAVYDPVGNRT---FERLINPGVPIPPEATAIHHITDEMVANAP 63

Query: 63  WIEDVIPHYY----GSEWYVAHNA-SFD--------RRVLPEMPG-EWICTMKLARRLWP 108
              ++I  +     G    +AHN   FD        +R   E+P  +++ T+K ARR   
Sbjct: 64  SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123

Query: 109 GIKYSNM----ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
            +    +     +Y   + N         HRAL D  +   +   +++     AE  A +
Sbjct: 124 DLPRHTLQFLRGIYGIAENNA--------HRALDDVIVLHQVFSAMLDDLS-IAEAYA-L 173

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
             +P  +    FGK++G  +  V      Y++WL        PE  L L+   E
Sbjct: 174 MNQPKDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFE 223


>UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein
           n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB
          Length = 484

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEAMV 58
           + DTET GL   +  IV+I +V V++G+++    ++ LV P RPI   +  +H ++ AMV
Sbjct: 279 VFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTAMV 338

Query: 59  ADKPWIEDVIP--HYYGSEWY-VAHNASFD----RRVLPEMPGEW---ICTMKLARRLWP 108
              P I +     H + ++   VAHNA FD    RR        W   I    L   +  
Sbjct: 339 QGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAVLF 398

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           G    +       +L++  PP L  H AL D   TA  L+ ++
Sbjct: 399 GASVPHTLDALCERLDITIPPAL-RHTALGDAQATACALVQMI 440


>UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum
           DSM 20098 RepID=C4FGI7_9BIFI
          Length = 186

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 16/121 (13%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G+      I+EI +V V  G +    S LV P RP+      +  I++ MV +
Sbjct: 21  VVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMVGN 80

Query: 61  KPWIEDVIPHYYG----SEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107
              IE V+P +      S+  VAHNA+FD         R +      ++I T++L+R L+
Sbjct: 81  ASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRALF 140

Query: 108 P 108
           P
Sbjct: 141 P 141


>UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora
           acidiphila DSM 44928 RepID=C7Q2F7_CATAD
          Length = 204

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 26/162 (16%)

Query: 4   IIDTETCGLQGGIVEIASVDVI----DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G Q  I EI  V ++     G++      L+RP   +   A  +H IT  MV 
Sbjct: 14  VVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGVG--ATRVHGITREMVE 71

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARR 105
             P  EDV    +G       VAHN +FD + L           PE+ G   CT++ ++ 
Sbjct: 72  PAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAG-GACTLRTSQA 130

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           + PG  Y  +   +   + +        H AL D   TA LL
Sbjct: 131 MLPGPSYKLLDCCEAVGVELTDA-----HSALGDALATARLL 167


>UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876
           RepID=UPI0001BC319F
          Length = 234

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 30/195 (15%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ID ET GL      I+E+ +V   DGK V+  + L+ P   I  +   I  I + MV+  
Sbjct: 8   IDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMVSKA 67

Query: 62  PWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110
           P+I+D    I  + G++  + HN  FD   +         E   E I T+K A+++ P  
Sbjct: 68  PYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVLPAN 127

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL 170
           +  N+  +     ++ T     HHRA  D    A +             ++ +++G  ++
Sbjct: 128 ESKNLE-HLCEMFDIVTI----HHRAYEDAMSAANVYF-----------RLCELSGEETI 171

Query: 171 MTTFTFGKYRGKAVS 185
           +  + F K +   ++
Sbjct: 172 VEQYHFKKQKAAGIT 186


>UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2
           RepID=UPI0000510268
          Length = 581

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 24/182 (13%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAMVA 59
           I+D ET G   G   I EI +V    G+++     LV+P+   ISP    +  IT AMV 
Sbjct: 33  IVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAMVD 92

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFD----RRVLPEMPGEW-----ICTMKLARRLW 107
           D P I  V+P +         VAHNA FD    R    ++   W     + T+ L+RR+ 
Sbjct: 93  DAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRRVV 152

Query: 108 PGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMA 162
              +  N  L         +  P    HRAL D   T  +L  ++   G     T E++A
Sbjct: 153 SRDEVRNHKLSTLAAHFGTEVSP---DHRALSDAKATGEVLHRVLERFGGYGITTLEELA 209

Query: 163 DI 164
            +
Sbjct: 210 TV 211


>UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter
           asiaticus str. psy62 RepID=C6XFY8_LIBAP
          Length = 245

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)

Query: 4   IIDTETCGLQGG---IVEIASVDVID-GKIVNPMSHLVRPD-RPISPQAMAIHRITEAMV 58
           + D ET GL      I+EI +V+++D  K        + P+ R  SP+A+ +H IT+  +
Sbjct: 11  VFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFL 70

Query: 59  ADKPWIEDVIPHYY------GSEWYVAHNASFDRRVL----------PEMPGEWICTMKL 102
            DKP    +   ++       +EW +AHNA FD   +          P  P   I T+ +
Sbjct: 71  KDKPSFSSIFSEFWDFFNEQNAEW-IAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSI 129

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           ARR  P  +    +L K   + +        H AL D ++ + + I +M
Sbjct: 130 ARRKHPSSRNDLNSLCKRYGITISHRS---KHGALLDSHLLSDVYIKMM 175


>UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ
          Length = 934

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 23/167 (13%)

Query: 4   IIDTETCGL-----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ++D ET G      +  I +IA+V V DG+I+   S  + P R I P    +  I E+MV
Sbjct: 7   VVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDESMV 66

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---MPG--EWIC----TMKLARRL 106
              P  +DV P          +VAHN  FD   L E     G  E  C    T++LA+ L
Sbjct: 67  KQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQIL 126

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            P    Y    L K  +L    P     HRA  D   TA L +  +N
Sbjct: 127 LPTADSYKLRDLAKQHELEHDQP-----HRADSDALATAELFLQFLN 168


>UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EF57_9CLOT
          Length = 319

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +ID ET G    +  I+E+ ++ + +G++V   S L +P R +    + +  I+  M+A 
Sbjct: 24  VIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEMLAS 83

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
            P + DV P Y    G    V HN  FD         +  L     + +  + L+R+L P
Sbjct: 84  APELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKLLP 143

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYIT 143
            +    +    +   N+    G+  HR+L+DC  T
Sbjct: 144 DLTSHKLCRVSSH-FNI-CVEGM--HRSLFDCKTT 174


>UniRef50_B0UD78 DNA polymerase III, epsilon subunit n=5 Tax=Alphaproteobacteria
           RepID=B0UD78_METS4
          Length = 238

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 25/174 (14%)

Query: 1   MLR--IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRIT 54
           MLR  ++DTET G       +VEI  +++++        H  + P RP+S  A+A+H + 
Sbjct: 1   MLREIVLDTETTGTDAKTDRLVEIGGIELLNHIPTGREFHRYINPQRPVSQGALAVHGLA 60

Query: 55  EAMVADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMP-----GEWIC 98
           +A +ADKP    ++P +    G   +V HNA+FD         R+    P        + 
Sbjct: 61  DAFLADKPPFAAILPAFLDFCGDATFVIHNAAFDVGFLNAEYARLGDAAPPAIDLAGVVD 120

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           T+ LARR  P    +  AL     ++         H AL D  I A + I+++ 
Sbjct: 121 TLALARRKHPNAANNLDALCARYGIDNSRRT---KHGALLDAQILAEVYIELLG 171


>UniRef50_Q5ZVQ6 DNA polymerase III, epsilon subunit n=12 Tax=Gammaproteobacteria
           RepID=Q5ZVQ6_LEGPH
          Length = 251

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 29/165 (17%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           I+DTET G+   QG  ++EI  +++ID K+     H+ + P R +   A  +H I+   +
Sbjct: 23  ILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGISTEFL 82

Query: 59  ADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPGEWIC----TMKL 102
            DKP  +D++  +     GSE  + HNA FD        + V      E  C    T+ L
Sbjct: 83  QDKPLFQDIVTEFIQFVEGSE-LIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTLIL 141

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           AR   PG + S  AL K  +++       H +R L+   + A +L
Sbjct: 142 AREKHPGQRNSLDALCKRYEID-------HFNRELHGALLDAEIL 179


>UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae
           group RepID=Q4ZNE2_PSEU2
          Length = 204

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           +ID ET G+  G      EIA V +  G+IV     L+     I      +  I+  M+ 
Sbjct: 7   VIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNMIR 66

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDR--------RVLPEMPGEWICTMKLARRLWP 108
             P  E V   +  + GS   VAHNASFD+        R+       + C++ LARRL P
Sbjct: 67  TAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRLMP 126

Query: 109 GI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN----TSGWTA--- 158
           G    K   +  Y       + P     HRA+ D  + A L   + N    T G +A   
Sbjct: 127 GAPNHKLGTLTRY------ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISH 180

Query: 159 EQMADITGRPSLMTTFTFGKYRG 181
           + +  +   P+   + T  + RG
Sbjct: 181 QMLCSLQKVPAAKISETLKRQRG 203


>UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium
           RepID=A4YW65_BRASO
          Length = 737

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 21/165 (12%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G       I EI +V V + ++V     L+ P RPI  + + +  IT  MV D
Sbjct: 565 VVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMVRD 624

Query: 61  KP---WIEDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P    I D    + G   +VAHN +FD         R+        +CT    RR +PG
Sbjct: 625 APVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRYPG 684

Query: 110 -IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
              Y    L     + +       HHRAL D    AA L++++NT
Sbjct: 685 HTSYGLGKLCAIYGIELDD-----HHRALCDAR-AAAHLLNLINT 723


>UniRef50_C7RR73 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1
           RepID=C7RR73_9PROT
          Length = 484

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 26/188 (13%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G       ++E+  V+V D   V   S LV P+ PISP    +  I +AMV
Sbjct: 12  LVFVDLETSGANFASDRVIEVGLVEV-DADGVREWSVLVNPEAPISPFITRLTGIDDAMV 70

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107
              P    + P           VAHNA FD        +R+  E     +CT+KL+R+L+
Sbjct: 71  GSAPTFRQLAPTLLDRLRGRLLVAHNARFDYGFLQCEFKRLGVEFRTPTLCTVKLSRKLF 130

Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMA 162
           P     N+ AL     L V      + HRAL D  I   L      D+ + +  +A  +A
Sbjct: 131 PEHHRHNLDALVTRHGLKVAG----NRHRALADARILWELWQCWHKDLASETVRSA--VA 184

Query: 163 DITGRPSL 170
            I GRP L
Sbjct: 185 TIVGRPEL 192


>UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L7K7_STAHJ
          Length = 219

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 19/176 (10%)

Query: 5   IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           +D ET  G +  I  +  V V++ +IV     LV P    S   + +H IT   V D P 
Sbjct: 44  LDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVIDAPS 103

Query: 64  IEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWPGIK 111
            E V P+   +      VAHNA+FD  VL +   +         + C+ +LA+R     +
Sbjct: 104 FEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTIDAYR 163

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
           Y    L K  KL+        HH AL D    A +   ++       + M  I G+
Sbjct: 164 YGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHYD-NLQSMLQIYGK 213


>UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CAB9_9FIRM
          Length = 525

 Score = 56.2 bits (134), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 27/164 (16%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL      I+E+ ++   +G  V   S LV P+  IS +A  I+ IT  MV   
Sbjct: 55  FDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMVKKA 114

Query: 62  PWIEDVIP----HYYGSEWY-----VAHNASFDRRVLPEM------PGEWIC--TMKLAR 104
           P  ED++      + G   +      AHNA FD   L +         + +C  T+ L+R
Sbjct: 115 P-TEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSLSR 173

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           ++ PG+  Y    +   +  N++       HRA+ D  +   +L
Sbjct: 174 KIIPGLSNYKQTTV--AKHFNIKNK---QEHRAISDAEVCGEIL 212


>UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria
           RepID=Q21J48_SACD2
          Length = 238

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 32/178 (17%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58
           ++DTET GL   QG  I+EI  V++I+ K+     H  ++P+R I   A+ +H IT   +
Sbjct: 5   VLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEFL 64

Query: 59  ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLP---EMPGEW----------ICTMK 101
           ADKP  +D+   +     G+E  V HNA FD   L     + G            + T+ 
Sbjct: 65  ADKPVFKDIADEFMAFVDGAEL-VIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI--MNTSGWT 157
           LAR   PG K +  AL K    +          R L+   + A +L D+  + T G T
Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSA-------RDLHGALLDAEILADVYLLMTGGQT 174


>UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21
           RepID=C0WAB0_9FIRM
          Length = 225

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 24/162 (14%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEAMV 58
           +ID ET GL   +  I+EI +V V +G +       + P+  + +SP    +  IT++ +
Sbjct: 59  VIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDSDL 118

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRL 106
              P   +++P    + G    V HN +FD         R     +   ++ T KLA+ +
Sbjct: 119 VGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAKTV 178

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            PG+  YS  AL K   +        +HHRA+ DC +T  +L
Sbjct: 179 VPGLSHYSLEALCKHFGI------AGNHHRAVDDCELTEKVL 214


>UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema
           RepID=Q73L66_TREDE
          Length = 217

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            DTET G +     +VEI  V      ++   + L+ P++P+ P+A  +++IT+ M+A +
Sbjct: 19  FDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEMLAGQ 78

Query: 62  PWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG 109
           P   +V+P +     +   VAHNASFD   +          ++  +   T+  AR   PG
Sbjct: 79  PKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARETLPG 138

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYI 142
           ++   +    T+   VQ    ++ HRA  D  +
Sbjct: 139 LQSYALQNLATQ-FGVQ---AVNAHRAEDDARV 167


>UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma
           mali AT RepID=B3R0M5_PHYMT
          Length = 1449

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 22/166 (13%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           I D ET GL      I+EIA++ + + +I++    L+ P + ++P    +  I+   + +
Sbjct: 411 IFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDLKN 470

Query: 61  KPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARR-LW 107
           +P I  ++P +     +   +AHN SFD   L     +         +I T+ LAR  L 
Sbjct: 471 QPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYCLD 530

Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
             ++Y N+ +L K  K++ +     +HHRA+ D  IT  +   ++N
Sbjct: 531 SNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571


>UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF
           19.5.1 RepID=C5CIX0_KOSOT
          Length = 185

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 23/170 (13%)

Query: 4   IIDTETCG---LQGG-IVEIASVDVIDGKIVNPMSH--LVRPDRPISPQAMAIHRITEAM 57
           +IDTET G   L+G  I+EIA++ +  GK+   ++   LV P   I      IH +    
Sbjct: 7   VIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLKNED 66

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           V  +P I DV P    Y G+   V H+   D +             +  ++I T+K+A+ 
Sbjct: 67  VTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKIAKD 126

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           L+    YS   L K  +L ++  P    HRAL D  +T  + + ++   G
Sbjct: 127 LFKEGSYSLAELAK--RLKIKDAP---THRALDDARVTGKVFLAMVKKLG 171


>UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
           ATCC 29799 RepID=A6P0N2_9BACE
          Length = 1390

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL      I+EI +V + +G+I       V P RP+S + + +  IT+ M+   
Sbjct: 372 FDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKMLEGA 431

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGE--WICTMKLARRLWPGI 110
           P  E+ I     + G     AHNA FD   + E      +P E   I T+ LA+ L P +
Sbjct: 432 PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLLPDL 491

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
               + +      +++ PP   HHRA  D  + A +L+
Sbjct: 492 GKYKLDIVAE---HLRLPP-FKHHRADADAGMVAYMLV 525


>UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN
          Length = 910

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 19/159 (11%)

Query: 4   IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      ++++A+  +  G ++      + P  P+S     +  IT+  V +
Sbjct: 427 VFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHVKN 486

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP 108
              +E V+  +         VAHNA+FD         R  LP++    I T++ AR L+P
Sbjct: 487 AKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNLYP 546

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
             K   +    T++  V      HHH A YD   T  LL
Sbjct: 547 EYKRHGLGPL-TKRFGVALE---HHHMANYDAEATGRLL 581


>UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BCD0_PARDP
          Length = 706

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 9/95 (9%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITEAM 57
           + DTET GL   QG  I++I ++ +++GK++       LV P R I P+++  H I   M
Sbjct: 518 VFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEM 577

Query: 58  VADKPWIEDVIP--HYYGSEW-YVAHNASFDRRVL 89
           V  +P I +V+P  H Y S+   V HN +FD R L
Sbjct: 578 VQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFL 612


>UniRef50_Q6MIB4 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus
           RepID=Q6MIB4_BDEBA
          Length = 276

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 5   IDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            DTET G   +   +VE  +V    G+ V  +  L +P  P++   + IH IT  MVAD 
Sbjct: 15  FDTETSGAYPVGHDVVEFGAVKWYKGEEVGRLQFLFKPREPMTDFIIGIHGITNEMVADA 74

Query: 62  PWIEDV---IPHYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWPG 109
           P I +    I  ++     +AH+A FD         +  LP +P   +CT  L+R+   G
Sbjct: 75  PLITEKIREIHEFFKGAIVMAHHAPFDLGFMAIDFEKNQLPLLPEPALCTSLLSRKWIHG 134

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDC 140
           ++   +     R LN+    G   HRA  D 
Sbjct: 135 VENHKLQTL-VRHLNID---GGQAHRAYDDA 161


>UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria
           RepID=A1BGS1_CHLPD
          Length = 219

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 26/168 (15%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET GL  Q G   +EI +V V  G+IV+    L+ P   IS    +   IT  M++
Sbjct: 11  VLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEMLS 70

Query: 60  DKPWIEDVIPHYYGSEW-----YVAHNASFDRRVLP-EMP-------GEWICTMKLARRL 106
            +P  E+V+  +  SE+      VAHNASFDRR L  E+        G   C++ ++RR+
Sbjct: 71  GQPCCEEVMTEF--SEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128

Query: 107 WPGIKYSNMALYKTRKL--NVQTPPGLHHHRALYDCYITAALLIDIMN 152
                Y +   +K + L  +   P     HRAL D  +TA L + +++
Sbjct: 129 -----YQDSPNHKLQTLVSHAGIPEIGSFHRALADAEMTAHLWMSMID 171


>UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI
          Length = 934

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 26/163 (15%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G        I++ A+V +  GKI++  S L+ P + I      +  + ++MV+
Sbjct: 7   VVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSMVS 66

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEW---ICTMKLARRLW 107
           D P   ++ P         ++VAHN  FD   L E       PG +   I T++LAR + 
Sbjct: 67  DAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELARTVL 126

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHH---HRALYDCYITAALL 147
           P         YK   L+ +   G+ H   H+A  D Y TA LL
Sbjct: 127 PCSDS-----YKLSDLSAKE--GIMHDRPHQADSDAYATAKLL 162


>UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB
          Length = 688

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 9/91 (9%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSH--LVRPDRPISPQAMAIHRITEAM 57
           + DTET GL  +GG  IV+IA + +++G+I+   S   LV P RPI P +  +H I++ M
Sbjct: 496 VFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISDDM 555

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFD 85
           V D P I +    ++        VAHNA FD
Sbjct: 556 VQDAPDIIEAGRRFHDFCQGAVLVAHNAPFD 586


>UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata
           HTCC2501 RepID=A4CLT9_9FLAO
          Length = 375

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 28/187 (14%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           ++D ET G    + GI EIA +   DG ++V+    L+ P+RPI P    +  I   MV 
Sbjct: 5   VLDIETTGGKFDEEGITEIA-IHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMVQ 63

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
             P    V   I         VAHNA FD R+L             + +CT+ L++RL P
Sbjct: 64  TAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLIP 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWT-------AEQ 160
             +  ++     R L +   P  + HRA  D   T  LL  +++  +G T       AE 
Sbjct: 124 DAESHSLGKL-VRSLGI---PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRAET 179

Query: 161 MADITGR 167
           + +++ R
Sbjct: 180 LGELSNR 186


>UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16
           Tax=Bacteria RepID=C4Z5K4_EUBE2
          Length = 1513

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 26/150 (17%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I+EI +V V +G+IV+  S  V P+ PI  +   +  I + MV +
Sbjct: 475 VFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMVMN 534

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPG 109
            P IE+++P +         VAHNA FD         ++   +    I T+ LA+ L P 
Sbjct: 535 APKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLMP- 593

Query: 110 IKYSNMALYK----TRKLNVQTPPGLHHHR 135
               N+  YK    T+ LNV       HHR
Sbjct: 594 ----NLHNYKLDTLTKHLNVVLES---HHR 616


>UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales
           RepID=A8LQ52_DINSH
          Length = 485

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 4   IIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITEAM 57
           I DTET GL       + +IA+  V++GK+V       LV P RPI   A  IH IT+AM
Sbjct: 293 IFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITDAM 352

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFD 85
           VAD P        ++G       +AHNA FD
Sbjct: 353 VADAPDFLTAGRAFHGFADGAVLIAHNAPFD 383


>UniRef50_B0RTE6 DNA polymerase III epsilon chain n=11 Tax=Proteobacteria
           RepID=B0RTE6_XANCB
          Length = 245

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 30/169 (17%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           I+DTET GL+      +VEI +V++++ +   N     +RPD    P A  +  +T   +
Sbjct: 5   ILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTLEFL 64

Query: 59  ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLP---EMPGEW----------ICTMK 101
           ADKP   +V+  +     G+E  + HNA+FD   L     + G+           + T+ 
Sbjct: 65  ADKPVFAEVVEEFLAYIDGAELII-HNAAFDLGFLDNELSLLGDQFGRIIDRATVVDTLM 123

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           +AR  +PG + S  AL K  +L V      + HR L+   + A +L D+
Sbjct: 124 MARERYPGQRNSLDALCK--RLGVD-----NSHRQLHGALLDAQILADV 165


>UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum
           RepID=DPO3E_TREPA
          Length = 215

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            DTET GL+     I+EI +V      I+   S L+ PDR I P    I+ IT+ M+ +K
Sbjct: 18  FDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDMLVNK 77

Query: 62  PWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109
           P   +++     +      VAHNA+FD   L           +  + + T  +A+ ++PG
Sbjct: 78  PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAVFPG 137

Query: 110 IKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALL 147
           +       Y+ + L +Q    +H  HRA  D  +   L 
Sbjct: 138 LGRHQ---YRLQNLALQFGLTVHAAHRAEDDARVCMELF 173


>UniRef50_Q5NUS9 Putative exonuclease n=1 Tax=Streptomyces albulus
           RepID=Q5NUS9_9ACTO
          Length = 288

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 36/170 (21%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDR--PISPQAMAIHRITEAMVADK 61
           ++DTET  L G I+EIA +D   G+ +  +  LV+P     I PQA A+HR+T   +AD 
Sbjct: 132 LLDTETTALDGQIIEIAILDAATGRPL--LDTLVKPTEGVEIDPQAHAVHRLTLEDLADA 189

Query: 62  PWIEDVIPHYY---GSEWYVAHNASFDR-RVLPEM------------PGEWICTMKLARR 105
           P  E V+P           +A++A+FDR R++               P  W C M+    
Sbjct: 190 PPWEKVLPKVRKLTKDRTILAYHAAFDRGRIIDHTEQVGKRPMHLADPDNWWCLMQ---- 245

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
                  +    Y   + ++  P     HRA+ DC     LL  I    G
Sbjct: 246 -------ARSQFYGHGRRSLNGP-----HRAMGDCRKERELLKKISEGHG 283


>UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM
          Length = 202

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 20/177 (11%)

Query: 5   IDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62
           ID ET  G       +A+V+V DG++    + L++P         + IH I+   V D P
Sbjct: 23  IDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKDVTDAP 82

Query: 63  WIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMP-GEWICTMKLARRLWPGI 110
              +V   +      +  VAHNASFD  VL         + P     CT+++AR++WP +
Sbjct: 83  TFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIARKVWPAL 142

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA-LLIDIMNTSGWTAEQMADITG 166
                  +K   +         HHRAL D    AA LL   M T     E++A   G
Sbjct: 143 DD-----HKLNTVGAHLNINFRHHRALDDARTCAAILLFAGMETGTDDIEELAQKIG 194


>UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GHD8_9FIRM
          Length = 269

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 78/167 (46%), Gaps = 24/167 (14%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMA-IHRITEA 56
           I DTET G    QG  I+ IA+V + +G+I        LV P R I PQA+  +  IT+ 
Sbjct: 80  IFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSI-PQAVCDLTGITDD 138

Query: 57  MVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
           MVADK  I  V+  +    G    VAHNA FD   L          E+    I T KL R
Sbjct: 139 MVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLGR 198

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            L+P +   ++     R   V+  P    H AL D  +TA + +D +
Sbjct: 199 ALYPQLLSHDLDTL-IRHHRVKERP---RHTALGDSLMTAEIFLDYL 241


>UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella
           RepID=D1PV56_9BACT
          Length = 287

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 99/274 (36%), Gaps = 67/274 (24%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L I D ET GL      I++I+ + V         S  V P++PI P    +  IT+ MV
Sbjct: 9   LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68

Query: 59  ADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGEWI----------CTMKLAR 104
            D P  + +       + G ++   ++  FD   +P +  E++          C +  A+
Sbjct: 69  KDAPTFKQIAKSLQETFAGCDFAGFNSNRFD---VPMLAEEFLRAGVDFDFQRCRLIDAQ 125

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----------------- 147
            ++  ++  N+A         +       HRA  D   T  +L                 
Sbjct: 126 NIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEK 185

Query: 148 ------------------IDIMNTSGWT------AEQMADITGRPSLMTTFTFGKYRGKA 183
                             +D      W        + + D  G+P L   F F KY+G A
Sbjct: 186 TLANDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWA 245

Query: 184 VSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           V+DV  RDPG+  W+      +S +  L  K  L
Sbjct: 246 VADVVHRDPGFCNWI------LSSDFPLNTKQVL 273


>UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE
          Length = 469

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L +ID ET G   +   + EIA + +  G+IV     LV P+RPI      +  IT+ MV
Sbjct: 7   LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66

Query: 59  ADKPW---IEDVIPHYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107
           A  P    + D +  +     +VAHNA FD         R+  +     +CT+KL+R L+
Sbjct: 67  AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126

Query: 108 P 108
           P
Sbjct: 127 P 127


>UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS
          Length = 459

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 27/166 (16%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           I+DTET G   Q G  I+E+ ++++I+ K+     H+ + P++P+   ++ +H IT+  +
Sbjct: 235 ILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVG-DSVQVHGITDEFL 293

Query: 59  ADKP---WIEDVIPHYYGSEWYVAHNASFD--------RRV-LPEMPG--EWICTMKLAR 104
            DKP    I D +  Y      +AHNA+FD        +RV LP +    E   T+ LA+
Sbjct: 294 VDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSEVCEVTDTLALAK 353

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
              PG K S  AL +  ++  +        R  +   + A +L D+
Sbjct: 354 NKHPGQKNSLDALVRRYEIPAR-------DRTFHGALLDAEILSDV 392


>UniRef50_Q1JYJ5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfuromonas
           acetoxidans DSM 684 RepID=Q1JYJ5_DESAC
          Length = 193

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 17/162 (10%)

Query: 16  IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYY--- 72
           I+  A+V +  G+I       V+P   I P+++  H IT+ M+ DKP I +V+P +    
Sbjct: 23  IINAAAVKIKKGRITKIYETYVKPPTSIPPESIQFHGITDDMLVDKPSIGEVLPEFMTFI 82

Query: 73  GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLARRLWPGIKYSNMALYKTRK 122
           G      H+ +FD ++L     E          W+ TM L + +      +N +      
Sbjct: 83  GDSMITGHHINFDLKMLDRHLRENYDCNLEGAPWLDTMLLHKLVME----NNTSTQLDDL 138

Query: 123 LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           LNV        HRAL D   TA + + I++    + + + D+
Sbjct: 139 LNVYCIDCEQRHRALGDSIATAKVFLRILHELSNSYQTLNDL 180


>UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis
           DSM 15434 RepID=C0W351_9ACTO
          Length = 547

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 29/172 (16%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G   G   I EI +V V  G++ + +S LV P R I  Q   +  IT AMVA 
Sbjct: 33  VVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMVAG 92

Query: 61  KPWIEDVIPHYYGSEW---------YVAHNASFD----RRVLPEMPGEW-----ICTMKL 102
            P + + +  +   +W          VAHNA FD    R     +  +W     + T+ L
Sbjct: 93  APPVPEALERFL--QWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           ARR W   +  N  L      +    P    HRAL D   T    +D+++ +
Sbjct: 151 ARRAWTRSEVPNHRLATL--ASFVGSPTRPTHRALDDARAT----VDVLHAA 196


>UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K928_THASP
          Length = 502

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G    +  I EI  V V D   V   S LVRP   I      +  I + MV
Sbjct: 12  LAFVDIETTGGPAQRESITEIGIVQV-DEDGVREWSTLVRPASRIPETIQRLTGIDDDMV 70

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLW 107
           AD P  ED+    +       +VAHNA FD        RR   +M  + +CT+KL+RRL+
Sbjct: 71  ADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRLF 130

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYI 142
           P  +   +  L +   L V        HRAL D  +
Sbjct: 131 PDHRRHGLDHLIERHGLAVAD-----RHRALGDARL 161


>UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia
           RepID=B3CMS2_WOLPP
          Length = 234

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 21/165 (12%)

Query: 4   IIDTETCGLQGG----IVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRITEAMV 58
           ++DTET GL       I+EI  V++I+        H  + P+R I   +  IH I+E  +
Sbjct: 9   VLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEFL 68

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW----------ICTMKLARR 105
            DKP   DV      +  ++  V HNA FD + L    G+           + T+ LAR+
Sbjct: 69  EDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLARK 128

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
            + G   S  AL K   ++++   G   H AL D  + A + +++
Sbjct: 129 KFVGSPASLNALCKRFDISLE---GRELHGALVDAQLLAKVYVEL 170


>UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria
           RepID=B1I276_DESAP
          Length = 921

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      IVE+  V V DGK       LVRP RP+  +  ++  + +A +A+
Sbjct: 7   VLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADLAE 66

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIKYS 113
           +P   +V P    + G+E  V H+  FD   L    G    +   T+ LAR + PG+   
Sbjct: 67  RPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLPSY 126

Query: 114 NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            + L     L++   PG   HRA+ D    A L   ++
Sbjct: 127 RLELL-CAHLDLPERPG---HRAMEDARAAAGLFTALL 160


>UniRef50_C6UMV7 Putative DNA polymerase III, epsilon subunit n=1 Tax=Candidatus
           Hodgkinia cicadicola Dsem RepID=C6UMV7_HODCD
          Length = 182

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 22/159 (13%)

Query: 4   IIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPI--SPQAMAIHRITEAMV 58
           I+DTET GL      ++E+A++ + DG+      H     +P+  S  A  +H I+   +
Sbjct: 10  ILDTETTGLSVKTDRLIELAAIKLEDGRRTPHTYHSYFNPQPVKVSRSAFNVHGISNEFL 69

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLARR 105
           +DKP  +        +      +AHNA FD +++          P   G W  ++ +A++
Sbjct: 70  SDKPAFKSCAREFLEFVAGHELIAHNARFDLQIINRELQMAGADPIDAGCWRDSLSIAKQ 129

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           L+P    S  AL K   L  +T      H A  DC + A
Sbjct: 130 LFPNRSNSMAALCKRFNLECETET----HSAARDCELLA 164


>UniRef50_Q2W5M2 DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
           n=3 Tax=Magnetospirillum RepID=Q2W5M2_MAGSA
          Length = 216

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 28/157 (17%)

Query: 12  LQGGIVEIASVDVIDG----KIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDV 67
           L G ++EI  V+++ G    K        ++P  PI+  ++A+H IT A + D P   DV
Sbjct: 41  LPGVMIEIGCVELLRGEDGWKTGESWHRRIQPGGPIAKASIAVHGITPAELKDAPQFRDV 100

Query: 68  IPH---YYGSEWYVAHNA-----------------SFDRRVLPEMPGEWICTMKLARRLW 107
           +     + G +  +AH+A                  FD  +  +   +++CT +L+R+ +
Sbjct: 101 LDEFETFIGQDMLLAHSAENEIEFLNFEYARVGRCGFDDVIFSD--NDFVCTQELSRQFF 158

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           PG+  S   L    +L +       HH AL D  +TA
Sbjct: 159 PGVPGSLDVL--CDRLWIDRSDRFEHHGALLDAILTA 193


>UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD
          Length = 551

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 19/170 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L ++D ET G       I EI +V V  G+++      V P+RPI     ++  IT+A V
Sbjct: 21  LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE----W-----ICTMKLARRL 106
           A+ P I  V+P    + G    VAHNA FD   L          W     + T+ LAR +
Sbjct: 81  AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIMNTSG 155
           +   +   +  ++   L      G+   HRAL D   T  +L  I+   G
Sbjct: 141 F---RRDEVRDHRLSTLARHVGAGITPDHRALSDARATVDVLHAIIERLG 187


>UniRef50_A6GQ42 DNA polymerase III subunit epsilon n=1 Tax=Limnobacter sp. MED105
           RepID=A6GQ42_9BURK
          Length = 308

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 4   IIDTETCGLQGGIVEIASVDVI----------DGKIVNPMSHLVRPDRPISPQAMAIHRI 53
           ++DTET GL     E+  V  +           G ++     L  P   I+P+  AIH I
Sbjct: 48  VVDTETTGLDYATCEVIEVGAVLIEVDQDTGAIGAVLGTFGGLEEPKVAITPENSAIHGI 107

Query: 54  TEAMVADKPWIEDVIPHYYG-SEWYVAHNASFDR----RVLPEMPGE-WICTMKLARRL- 106
           T  MV  + + E  +      +  +VAHNA+FD+    R  P +    W CT    R L 
Sbjct: 108 TNEMVKGQRFDEAALKALCSEAALFVAHNAAFDKPFMLRRFPWLEKSIWACTF---RELP 164

Query: 107 WPGIKYSNMALYKTRKLN-VQTPPGLHH--HRALYDCYITAALLIDIMNTS 154
           W    YS       RKL  + +  G  H  HRA+ DC     +L   M TS
Sbjct: 165 WTQENYSG------RKLEYLLSDCGYFHGAHRAVEDCNALVHVLAQPMKTS 209


>UniRef50_D1U8F3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U8F3_9DELT
          Length = 179

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 24/149 (16%)

Query: 5   IDTETCGLQGGIVEIASVDVID-GKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVADKP 62
           ID ET   +        + V+D G+IV     L+RP  R  +P  + +H I    VAD+P
Sbjct: 13  IDFETADAKRDSACAVGLVVVDRGEIVARDYRLIRPPRRRFNPFCVQVHGIHWEDVADQP 72

Query: 63  WI----EDVIPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW-- 107
                  D+ P + G+++ VAHNASFD+ VL     E         ++CT++LAR  W  
Sbjct: 73  AFGELWPDLSPLFEGADFLVAHNASFDKSVLAACCRESRCLPPVQPFLCTVQLARTTWQL 132

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRA 136
           P  K  N+  +    L        HHH A
Sbjct: 133 PSNKLPNVCCHLGITLT-------HHHAA 154


>UniRef50_UPI000169A625 DNA polymerase III, epsilon subunit n=1 Tax=Yersinia pestis FV-1
           RepID=UPI000169A625
          Length = 143

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 27/135 (20%)

Query: 4   IIDTETCGLQG--------GIVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRIT 54
           ++DTET G+           I+EI +V VI+  +     H+ V+P R + P+A  +H I+
Sbjct: 10  LLDTETTGMNKLGVHYEGHRIIEIGTVAVINLPLTGRNFHVYVKPARLVDPEAYGVHGIS 69

Query: 55  EAMVADKPWIEDVIPHYY----GSEWYVAHNASFD--------RRVLPEMPG-EWICTM- 100
           +  +ADKP   D+ P +     G E  V HNA+FD        R +  ++P  E +C + 
Sbjct: 70  DEFLADKPTFADITPEFLDFIRGGEL-VIHNAAFDIGFKDYEFRMLQQDIPKTETLCPIS 128

Query: 101 ---KLARRLWPGIKY 112
              ++  RL+PG ++
Sbjct: 129 DNKEMPPRLFPGKRH 143


>UniRef50_A9VZJ3 Exonuclease RNase T and DNA polymerase III n=7
           Tax=Alphaproteobacteria RepID=A9VZJ3_METEP
          Length = 297

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 24/154 (15%)

Query: 27  GKIVNPMSHLVRPDR-PISPQAMAIHRITEAMVADKPWIEDVIPHY---YGSEWYVAHNA 82
           G++V   S L+RP +   SP  + +H I  A V D P   +VI  +         +AHNA
Sbjct: 29  GRVVRRESRLIRPPQLRFSPGNIRVHGILPADVRDAPTFPEVIAEFLPDLSGGLMLAHNA 88

Query: 83  SFDRRVL-----------PEMPGEWICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGL 131
            FD  VL           P+M G   CT+++ARR++P      +A    R L ++     
Sbjct: 89  GFDMGVLAASLAAWGEPVPDMAGH--CTLQIARRVFPDPAGHGLAKVAGR-LGIR----F 141

Query: 132 HHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            HH A  D +  A + +  ++ +G  A  +AD+ 
Sbjct: 142 EHHDAGEDAFACAEIALAALHETG--AADIADLA 173


>UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1
           Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT
          Length = 619

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 22/164 (13%)

Query: 5   IDTETCGL---QGG-IVEIASVDVIDGKIVNPMS--HLVRPDRPISPQAMAIHRITEAMV 58
            D ET GL   QG  ++++ +V +  G++++  S   L+ P  PI  Q+MA H I+  MV
Sbjct: 433 FDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDPGIPIPAQSMAYHGISNDMV 492

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107
             KP +  V+P    + G+     HN +FD + L    GE         + TM LA  L 
Sbjct: 493 KGKPPLAVVLPQFAAFAGASALAGHNVAFDLKFLHAAQGETGIALRQPVLDTMILAALLD 552

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           PG   S  A+    +L V   P L H  AL D  +TA +L  ++
Sbjct: 553 PGYDLSLEAVAG--RLGV---PPLPHRSALSDALVTAEILARLI 591


>UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=B0MME8_9FIRM
          Length = 1605

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 22/172 (12%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET GL      I EI +V + + +IV   S  V P  PI      +  IT+ MVAD
Sbjct: 593 VFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMVAD 652

Query: 61  KPWIEDV----IPHYYGSEWYVAHNASFD----RRVLPEMPGEW----ICTMKLARRLWP 108
            P  EDV       + G+    AHNA FD    R     M   +    + T+ +A+    
Sbjct: 653 AP-TEDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAALK 711

Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
           GIK Y    + K  KL         HHRA+ D  +   + + I+N +  TA+
Sbjct: 712 GIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758


>UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales
           RepID=C5EVY5_9FIRM
          Length = 240

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 18/173 (10%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL   Q  I EIA++ V+DG I       V P R +      +  IT+ M+AD 
Sbjct: 8   LDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGMLADA 67

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110
           P IE++I     + G    + HN  FD   L         E   E I T+ L R    G 
Sbjct: 68  PPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFMTGE 127

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
              N++       +V   P    HRA  D      L  ++M+  G     M D
Sbjct: 128 TRKNLSC-ACSYFHV---PQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD 176


>UniRef50_A7A5A0 Putative uncharacterized protein n=1 Tax=Bifidobacterium
           adolescentis L2-32 RepID=A7A5A0_BIFAD
          Length = 261

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 5   IDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           +D ET GL     I+E+ +V +  G+ V   S LV P  PI  +   I  IT+  V  KP
Sbjct: 102 VDIETTGLGRDARIIELGAVRIRHGRKVASYSQLVNPQIPIPAKVTQITGITDRNVKGKP 161

Query: 63  WIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYK 119
            I+  +P +Y   G + ++ HN    R  +P +  E       A+R+  G+   +++ Y 
Sbjct: 162 TIDKALPKFYAFCGRDTWIGHN--IRRFDIPVIARE-------AQRVGAGM--PDVSFYD 210

Query: 120 TRKLNVQTPPGLHHHRAL 137
           T +L+    P L HHR +
Sbjct: 211 TMELSQALLPQLDHHRVV 228


>UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38
           Tax=Enterococcus RepID=C2JLR4_ENTFA
          Length = 929

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 25/211 (11%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET G       I++   V V DGKI+   +  V P++ +  Q  ++  I+   V  
Sbjct: 15  VVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQVQK 74

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLWP 108
            P+ EDV   I HY     +VAHN  FD   L         P +    I T++LA+   P
Sbjct: 75  APYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQIFLP 134

Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMAD 163
             K   ++ L ++  L+ + P     H+A  D  +TA LL+ I          T E++A+
Sbjct: 135 TEKSFRLSDLSESLGLSHENP-----HQADSDAQVTAELLLLIQEKMKSLPLVTMEKIAE 189

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           ++ + +  T+    +   +    V   +P Y
Sbjct: 190 LSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220


>UniRef50_Q3IIS2 DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
           proofreading function n=3 Tax=Proteobacteria
           RepID=Q3IIS2_PSEHT
          Length = 237

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 36/172 (20%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           ++DTET G+   QG  I+EI  V++++ ++     H+ + P R    +A+ +H IT   +
Sbjct: 7   VLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHGITNEFL 66

Query: 59  ADKPWIEDVIPHYY----GSEWYVAHNASFDRRVLPEMPGEW------------IC---- 98
            DKP    +   ++    G+E  V HNA FD   +  M  E+             C    
Sbjct: 67  RDKPLFHQIAQEFFDYIKGAEL-VIHNAPFD---IGHMDNEFSLLNQGYPKTATFCQVLD 122

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           T+K+AR L PG K +  AL   R+ +V         R L+   + + +L D+
Sbjct: 123 TLKMARDLHPGQKNNLDAL--CRRYDVDNAK-----RTLHGALLDSEILADV 167


>UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium
           RepID=C8W8J2_ATOPD
          Length = 978

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 29/169 (17%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++DTET GL   +  ++EI++  +   +I+      V P  PI  +   +  IT+  V  
Sbjct: 21  VLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDVKG 80

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPGI- 110
            P  ++ +     + G    +AHNA+FDR  +  +PG       WI T+ L+R   P + 
Sbjct: 81  APSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPRLS 140

Query: 111 --KYSNMA-LYKTRKLNVQTPPGLHHHRALYD----CYITAALLIDIMN 152
             K S+MA  + T K+          HRA  D    C +   LL+ +MN
Sbjct: 141 SHKLSSMAEAFGTMKVT---------HRASDDVDALCGMWRILLLGLMN 180


>UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae
           SP23-BS72 RepID=A5MUE3_STRPN
          Length = 308

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 19/180 (10%)

Query: 5   IDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           +D ET    +G +  I  V  IDG+ V+    L+ P+   S + + IH I    V   P 
Sbjct: 8   LDVETANSFRGSLCSIGLVKFIDGQEVDSFYTLINPEEKFSSRNIKIHAIKPEDVIGAPT 67

Query: 64  IEDV---IPHYYGSEWYVAHNASFDRRVLP------EMPG---EWICTMKLARRLWPGIK 111
             +V   I ++  +   VAHNA FD   L       E+P    ++ C+ ++ +     I 
Sbjct: 68  FPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQVCK-----II 122

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADITGRPSL 170
            +++  +K   L       L HH AL D      +L++I+  S  T+  +M    G P L
Sbjct: 123 LTDLPNHKLHTLAEHFKISLDHHNALSDARACGLILLEILKLSKQTSIRKMLKNLGYPEL 182


>UniRef50_D1NTJ1 DNA polymerase III PolC-type n=1 Tax=Bifidobacterium gallicum DSM
           20093 RepID=D1NTJ1_9BIFI
          Length = 214

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL   Q  I EI +V V DG+I +  S L+ P + I  +  A+  I++AMV D 
Sbjct: 21  LDIETTGLAPRQETITEIGAVRVRDGRIADRFSMLINPGKHIPSRITALTGISDAMVEDA 80

Query: 62  PWIEDVIPHY---YGSEWYVAHNASFDRRVL 89
           P I++ IP +      +  + HN  FD   L
Sbjct: 81  PMIDEAIPAFVDWVDGDRLIGHNIRFDLSFL 111


>UniRef50_C9LN05 DNA polymerase III PolC-type n=1 Tax=Dialister invisus DSM 15470
           RepID=C9LN05_9FIRM
          Length = 196

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 22/154 (14%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           ++D ET G+   I EIA++ V+ G+I +    LV+   PI  +   +  IT  M+ ++P 
Sbjct: 33  VMDIETTGMYSDITEIAALCVVSGEIRDTFHTLVKAKGPIEKRVERLTGITSDMLEEQPP 92

Query: 64  IEDVIPHYYGS-EWY--VAHNASFDRRVL---------PEMPGEWICTMKLARRLWPG-- 109
           I+DV+P +    E +  V H    D  V+         P +  ++I T  LA+ L P   
Sbjct: 93  IDDVLPIFMTFIEGFPLVGHGLDSDLIVIDRNLKAVGKPLVTNDYIDTHSLAKLLLPERE 152

Query: 110 ---IKYSNMALYKTRKLNVQTPPGLHHHRALYDC 140
               KYS  AL +  +L   T      HRA+ DC
Sbjct: 153 GEHRKYSVKALAEYYELPCST-----FHRAMDDC 181


>UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus
           RepID=B5EMD9_ACIF5
          Length = 248

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAMV 58
           ++DTET G+   QG  ++EI +V++ID ++        + P R   P+A+ IH +T+  +
Sbjct: 7   VLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEFL 66

Query: 59  ADKPW---IEDVIPHYYGSEWYVAHNASFDRRVLP---EMPGEW------ICTMKLARRL 106
            D+P    + D    + G    + HNA FD   L    ++ G+       + T+  ARR 
Sbjct: 67  QDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARRR 126

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
            PG K    +L   R+ +V+     + HR L+   +   +L ++
Sbjct: 127 HPGQKNDLNSL--CRRYSVE-----NSHRELHGALLDTRILAEV 163


>UniRef50_B4RBF9 DNA polymerase III epsilon chain n=3 Tax=Alphaproteobacteria
           RepID=B4RBF9_PHEZH
          Length = 234

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 23/167 (13%)

Query: 4   IIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHL-VRPDRPISPQAMAIHRITEAMV 58
           ++DTET G        +VEIA +++ D        H  + P R +  +A  +H ++ A +
Sbjct: 6   VLDTETTGFDPLTGDRLVEIACLEIEDFIPTGRHFHAYIDPCRDMPAEAEKVHGLSTAFL 65

Query: 59  ADKPWIE-----DVIPHYYGSEWYVAHNASFDRRVL---------PEMPG-EWICTMKLA 103
             KP  E     +    +      VAHNA+FDR  +          E+P   WI T+ LA
Sbjct: 66  RGKPKFEAPEIVEAFLDFVADAPIVAHNAAFDRAFVNYELGLCSRAELPDHRWIDTLALA 125

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           ++ +PG+  S  AL K  K+++        H AL D  + AA+ +++
Sbjct: 126 KQRFPGMHNSLDALCKRFKISLAE---REKHGALIDTKLLAAVYLEL 169


>UniRef50_A9AZA6 DNA polymerase III, epsilon subunit n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AZA6_HERA2
          Length = 282

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 25/171 (14%)

Query: 4   IIDTETCGL--QGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           + D E+ GL  Q G  I E+A++ +   +I++    LV P R I P A A++ I+  MVA
Sbjct: 28  LFDMESTGLDVQIGHRICEMAAMRIQGREIIDRCEFLVNPQREIDPAAFAVNGISAEMVA 87

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLW 107
           + P   ++ P     +     VAHNA FD         R  LP +    I T+ LARR  
Sbjct: 88  NAPSFGEIWPKVNKLFHEAVLVAHNAYFDIGFLTSELSRIDLPPLETPVIDTLALARRYI 147

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSG 155
              +Y+  +L     L  + P     HRA+ D      +   L+DI+   G
Sbjct: 148 TARRYNLTSL--ATNLGEKAP----SHRAMSDVVALRPVFEHLLDILYRKG 192


>UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4RQP7_9ACTO
          Length = 286

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 22/159 (13%)

Query: 4   IIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           ++D ET GL      IVEIA V +  G++V+  + LV P R   P    +H IT  M++ 
Sbjct: 39  VVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEMLSG 96

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWP 108
            P   DV   I         VAHNA F+   + +          P   +CT++LAR++  
Sbjct: 97  APTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQVLA 156

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
              +  ++      + +        H AL D   TA LL
Sbjct: 157 APNFQLVSCCTVYGIELHDA-----HTALGDTRATAQLL 190


>UniRef50_A5CE47 DNA polymerase III epsilon chain n=2 Tax=Orientia tsutsugamushi
           RepID=A5CE47_ORITB
          Length = 222

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 24/161 (14%)

Query: 4   IIDTETCGL---QGG-IVEIASVDVIDG--KIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           ++DTET GL   QG  I+EI +V++     +I N   + + P+R IS +A  +H ++   
Sbjct: 6   VLDTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDISKEAYKVHGLSRDF 65

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWIC-TMKLAR 104
           ++DKP   +++     +      + HNA+FD + L           +P   +  T+ LAR
Sbjct: 66  LSDKPKFREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFRIRKSAIPNTCVIDTLTLAR 125

Query: 105 RLWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITA 144
           + +P  + +  AL YK R   + T    H H AL D  + A
Sbjct: 126 KRFPKERVNLDALCYKFR---IDTSDR-HLHGALKDAKLLA 162


>UniRef50_P41060 Uncharacterized exonuclease CP81 n=12 Tax=root RepID=CP81_BP186
          Length = 194

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 23/173 (13%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
            IDTET GL G   EI  + +ID      ++ LV+P +PI  +A AIH IT+ MV   P 
Sbjct: 22  FIDTETTGL-GDDAEIVEICLIDSAGFIMLNTLVKPTKPIPAEATAIHGITDEMVMYAPT 80

Query: 64  IEDV---IPHYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPGIKYSN 114
            +D+   +   +    +V +NA +D R++ +      +  +  C     R     + Y+ 
Sbjct: 81  WKDIHGAVASLFFEYGFVIYNADYDTRLIYQTAKLYGLENDGFCYFLNERSACAMMLYAE 140

Query: 115 M----ALYKTRKLNVQTPPGLHH--------HRALYDCYITAALLIDIMNTSG 155
                  +K  K +       H         HRAL DC +T   +ID +   G
Sbjct: 141 YRGEPGRFKGYKWHKLVDAAAHEGVSVEGKAHRALADCRMTLG-IIDALAKGG 192


>UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67NP5_SYMTH
          Length = 958

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 18/146 (12%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ID ET G       ++E+A+V   DG+ +   S L+ P  P+  +   +  I  AM+A K
Sbjct: 9   IDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAMLAGK 68

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRLWPGI 110
           P IE+V+P    + G    VAHNA FD         R    +P     T +LAR   P  
Sbjct: 69  PRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVALPLA 128

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRA 136
           +   +A        +   P  HHHRA
Sbjct: 129 RNHRLATLA----ELLGLPLEHHHRA 150


>UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c
           RepID=D1VLC1_9ACTO
          Length = 615

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 27/172 (15%)

Query: 4   IIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           + D ET G       I E  +V V  G++V   + LVR    I P    +  IT+AM+A 
Sbjct: 54  VFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAMLAT 113

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFD--------RRVLPEMPG-EWICTMKLARRL-- 106
            P + +V+P    +      VAHNA FD         RV   +P  E + T +LARR+  
Sbjct: 114 APPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRIVT 173

Query: 107 ---WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
               P  K S++A    R    +T P    HRAL D   T  +L  +    G
Sbjct: 174 RDESPNNKLSSLA----RLFRARTEP---CHRALADARATVDVLHGLFERLG 218


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria...   355   7e-97
UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ...   272   5e-72
UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente...   247   2e-64
UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic...   222   9e-57
UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp....   196   3e-49
UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos...   194   1e-48
UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ...   193   4e-48
UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod...   191   2e-47
UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri...   190   3e-47
UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac...   190   3e-47
UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth...   189   6e-47
UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=...   188   1e-46
UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte...   187   2e-46
UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia...   186   4e-46
UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia...   184   1e-45
UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba...   184   2e-45
UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte...   184   2e-45
UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc...   183   3e-45
UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte...   183   4e-45
UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto...   183   4e-45
UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl...   183   4e-45
UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu...   183   5e-45
UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s...   181   1e-44
UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L...   181   2e-44
UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo...   180   2e-44
UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor...   180   3e-44
UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu...   180   3e-44
UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=...   180   4e-44
UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti...   179   6e-44
UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip...   179   6e-44
UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero...   178   1e-43
UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept...   178   1e-43
UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot...   178   1e-43
UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi...   178   1e-43
UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A...   177   2e-43
UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc...   177   2e-43
UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon...   177   2e-43
UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane...   177   2e-43
UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri...   176   4e-43
UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep...   176   4e-43
UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom...   176   4e-43
UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte...   176   5e-43
UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu...   176   6e-43
UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn...   176   7e-43
UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib...   176   7e-43
UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do...   175   1e-42
UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact...   175   1e-42
UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom...   175   1e-42
UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti...   174   1e-42
UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T...   174   1e-42
UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive...   174   2e-42
UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R...   174   2e-42
UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult...   173   4e-42
UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7...   173   4e-42
UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd...   173   4e-42
UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R...   173   4e-42
UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot...   173   5e-42
UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy...   173   5e-42
UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost...   172   7e-42
UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti...   172   7e-42
UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo...   172   9e-42
UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re...   171   1e-41
UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae...   171   2e-41
UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma...   171   2e-41
UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand...   171   2e-41
UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam...   170   3e-41
UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax...   170   3e-41
UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi...   170   3e-41
UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh...   170   3e-41
UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca...   170   3e-41
UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit...   170   3e-41
UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul...   169   4e-41
UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51...   169   4e-41
UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot...   169   5e-41
UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr...   169   5e-41
UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin...   169   7e-41
UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida...   169   7e-41
UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev...   169   8e-41
UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo...   168   1e-40
UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi...   168   1e-40
UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=...   167   2e-40
UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida...   167   2e-40
UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit...   167   2e-40
UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi...   167   2e-40
UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob...   167   2e-40
UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill...   167   2e-40
UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri...   167   3e-40
UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI...   167   3e-40
UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord...   166   4e-40
UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr...   166   4e-40
UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost...   166   6e-40
UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid...   166   7e-40
UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri...   165   8e-40
UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ...   165   8e-40
UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A...   165   1e-39
UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac...   164   1e-39
UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero...   164   2e-39
UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para...   164   2e-39
UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop...   164   2e-39
UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry...   164   2e-39
UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein...   164   2e-39
UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav...   163   3e-39
UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep...   163   3e-39
UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu...   163   3e-39
UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam...   163   4e-39
UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D...   163   4e-39
UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme...   163   4e-39
UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit...   163   4e-39
UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact...   162   5e-39
UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1...   162   5e-39
UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg...   162   5e-39
UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   162   6e-39
UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross...   162   7e-39
UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit...   162   9e-39
UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap...   162   9e-39
UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu...   162   1e-38
UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob...   162   1e-38
UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor...   162   1e-38
UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif...   161   1e-38
UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1...   161   1e-38
UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=...   161   1e-38
UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav...   161   1e-38
UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi...   161   1e-38
UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep...   161   2e-38
UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para...   161   2e-38
UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ...   161   2e-38
UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm...   161   2e-38
UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen...   161   2e-38
UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2 T...   161   2e-38
UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta...   161   2e-38
UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot...   161   2e-38
UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon...   160   2e-38
UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax...   160   3e-38
UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin...   160   3e-38
UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam...   160   3e-38
UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re...   160   3e-38
UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive...   160   3e-38
UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran...   160   4e-38
UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex...   160   4e-38
UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete...   160   4e-38
UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion...   160   4e-38
UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI...   159   5e-38
UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ...   159   5e-38
UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph...   159   6e-38
UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit...   159   7e-38
UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo...   159   8e-38
UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo...   159   9e-38
UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob...   159   9e-38
UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi...   158   1e-37
UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit...   158   1e-37
UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit...   158   1e-37
UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1...   158   1e-37
UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco...   158   1e-37
UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov...   158   2e-37
UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ...   157   2e-37
UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav...   157   2e-37
UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex...   157   2e-37
UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring...   157   3e-37
UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ...   157   3e-37
UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte...   157   3e-37
UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID...   157   3e-37
UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Pro...   157   3e-37
UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog...   157   3e-37
UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro...   157   3e-37
UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri...   156   4e-37
UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu...   156   5e-37
UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte...   156   5e-37
UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2...   156   5e-37
UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn...   156   5e-37
UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinom...   156   6e-37
UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ...   156   7e-37
UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth...   156   7e-37
UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge...   155   8e-37
UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich...   155   8e-37
UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acin...   155   9e-37
UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte...   155   1e-36
UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit...   155   1e-36
UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ...   155   1e-36
UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit...   155   1e-36
UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur...   155   1e-36
UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege...   154   1e-36
UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob...   154   2e-36
UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur...   154   2e-36
UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS...   154   2e-36
UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ...   154   2e-36
UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T...   154   2e-36
UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict...   154   2e-36
UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase...   154   2e-36
UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ...   154   2e-36
UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re...   154   3e-36
UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   154   3e-36
UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact...   154   3e-36
UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit...   154   3e-36
UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64...   153   3e-36
UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla...   153   3e-36
UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop...   153   3e-36
UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb...   153   4e-36
UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Strepto...   153   4e-36
UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr...   152   5e-36
UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea...   152   8e-36
UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins...   152   8e-36
UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel...   152   8e-36
UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl...   152   8e-36
UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3 T...   152   1e-35
UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   152   1e-35
UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili...   152   1e-35
UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rick...   151   1e-35
UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1 T...   151   1e-35
UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri...   151   2e-35
UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re...   151   2e-35
UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0...   151   2e-35
UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid...   151   2e-35
UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=...   151   2e-35
UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri...   150   2e-35
UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm...   150   3e-35
UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinet...   150   3e-35
UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria...   150   3e-35
UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose...   150   4e-35
UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell...   149   4e-35
UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD...   149   4e-35
UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob...   149   4e-35
UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac...   149   5e-35
UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=...   149   5e-35
UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capn...   149   6e-35
UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp....   149   7e-35
UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Pro...   149   8e-35
UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon...   149   9e-35
UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo...   149   9e-35
UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth...   148   1e-34
UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2...   148   1e-34
UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn...   148   1e-34

Sequences not found previously or not previously below threshold:

UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep...   169   4e-41
UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus...   166   6e-40
UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T...   165   1e-39
UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb...   164   1e-39
UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1...   163   4e-39
UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4...   154   2e-36
UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu...   154   3e-36
UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly...   153   4e-36
UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant...   152   6e-36
UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm...   152   8e-36
UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en...   151   2e-35
UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant...   151   2e-35
UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba...   150   3e-35
UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther...   150   3e-35
UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4...   150   3e-35
UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr...   149   5e-35
UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam...   149   6e-35
UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass...   149   7e-35
UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ...   148   1e-34

>UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae
           RepID=EXOX_ECOL6
          Length = 220

 Score =  355 bits (911), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD
Sbjct: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60

Query: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120
           KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120

Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180
           RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180

Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220
           GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220


>UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20
           Tax=Enterobacteriaceae RepID=A8GD51_SERP5
          Length = 222

 Score =  272 bits (697), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 134/218 (61%), Positives = 163/218 (74%), Gaps = 2/218 (0%)

Query: 2   LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           LR+IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI  +AMAIH ITE MV  K
Sbjct: 3   LRVIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGK 62

Query: 62  PWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTR 121
           P I   I  Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N  L    
Sbjct: 63  PRIAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYAL 122

Query: 122 KLNVQTPPG--LHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKY 179
            L+VQ P    L+ HRALYDCY+TAALL  I+  SGWT EQMA IT +P L+  F FGKY
Sbjct: 123 NLDVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKY 182

Query: 180 RGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           RG+ +  VA+ DPGYLRW+  +++ +SP+++ TLK+YL
Sbjct: 183 RGQEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220


>UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae
           RepID=A4W6Y1_ENT38
          Length = 223

 Score =  247 bits (631), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 6/221 (2%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           MLR+IDTET GL+GG   +VE+ASVD++DG I NPMS LV+P   I  +AMAIH ITE M
Sbjct: 1   MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60

Query: 58  VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIK-YSNMA 116
           V   P + +VI  Y G++ YVAHNA FD+  LP++   WICT KLAR L P  K +SN  
Sbjct: 61  VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120

Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176
           L  +  L  + P GL+ HRALYDCY+TA LL+ +   + WT  +M  I+  PSL+    F
Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180

Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           GK++G + +++A+ +PGYLRWL  N D    ++  T  H+L
Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219


>UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWQ3_ALIAD
          Length = 240

 Score =  222 bits (566), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDV---IDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
             ++DTET GL  +G +VE+A V+V    + +IV   S LV P  PI P+A A+H IT+ 
Sbjct: 8   FVVVDTETTGLPPEGRVVELALVEVGLECEPQIV--YSALVDPGCPIPPEASAVHHITDR 65

Query: 57  MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KY 112
            VA KP +  V P    Y G    VAHNA FDR +LPE    WIC+ +LA+ LW    K+
Sbjct: 66  DVAGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKH 125

Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-----SGWTAEQMADITGR 167
           SN  L     ++V+       HRAL D  +TA +    +            +++      
Sbjct: 126 SNQVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAES 182

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           P  + T  FGK++G  + +V      YL W   NL  +SP+LR +++  LE 
Sbjct: 183 PIEVQTMPFGKHKGMPLKEVP---LDYLDWALRNLQDLSPDLRWSMQRVLEQ 231


>UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B
           RepID=C9D3J4_9RHOB
          Length = 240

 Score =  196 bits (500), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 22/235 (9%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRIT 54
           ++R+ID ET G Q      ++E   VDV      IVNP   L +P  PI P  MA+H IT
Sbjct: 8   IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67

Query: 55  EAMVADKPWIEDVIPHYYGS----EWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110
           +  VAD P    V   ++      ++  AHNA F++        +WICT K A  +WP  
Sbjct: 68  DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127

Query: 111 KYS-NMALYKTRKLNV-----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
               N AL     ++              HRAL D Y+TA +L++++     T E++  I
Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTAHILLELLKHK--TPEELVQI 185

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +  P+L+TT  FGK++G   S+       YL W+ N  D +  + + + +++L+ 
Sbjct: 186 SEYPALLTTLRFGKHKGMKYSEAPT---DYLDWIVNKSD-LDEDTKFSSRYWLKK 236


>UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT
          Length = 726

 Score =  194 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 20/166 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL   Q  I EI +V V +G+IV+  S  V P   I    + +  IT+ MV
Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMV 481

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P +E V+     +      VAHNA+FD   + +        +   +I T++L R+++
Sbjct: 482 KDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMF 541

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           P + +Y    + K  K+ ++     +HHRA+ D   TA + +  +N
Sbjct: 542 PELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCIN 582


>UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN
          Length = 1401

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 18/166 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V + + KIV+     V P  PIS     +  I E+MV
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMV 447

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P IE+V+P +         VAHNA+FD   +          +    + T++L+R L+
Sbjct: 448 KDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLY 507

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
             +K   +               LHHHRA+ D   TA + I ++  
Sbjct: 508 QDLKNYKLDTLAEF----FEVKLLHHHRAVEDAKATAEIFIKMLEK 549


>UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MI24_RHOM4
          Length = 565

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%)

Query: 2   LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             ++DTET G      I+E+A+V V  G+IV   + L+ P R + P    +  IT AM+ 
Sbjct: 8   FVVVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLV 67

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107
            +P  ++V+P    + G    VAHN +FDR++L                +CT++LARRL 
Sbjct: 68  GRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLL 127

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-----TAEQMA 162
           PG+    +             P  + HRAL D   TA +L+ ++  +       T E + 
Sbjct: 128 PGLPAKGLDGLIRFY----QIPVENRHRALGDAEATAHVLLRLLEEARRQYGIDTLEALL 183

Query: 163 DITGR--PSLMTTFTFGKYRGKAVSDVAERDPGYL 195
               +  P         + R   +  + E    YL
Sbjct: 184 TFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYL 218


>UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI.
           Incertae Sedis RepID=B0S1A9_FINM2
          Length = 1421

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +V ++D KIV+  + L+ P+ PI  +   +  IT  MV
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMV 461

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D P I+ V+P +    G    +AHNA FD   + +   +        +I T+  AR L 
Sbjct: 462 KDMPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALE 521

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           P +K   +    T+K NV      +HHRA  D   T  + I ++N    
Sbjct: 522 PHLKNHKLDTL-TKKYNVNL---FNHHRACDDARATGEVFICMVNNLEQ 566


>UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae
           RepID=DPO3_THEP1
          Length = 1367

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 23/174 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V + DG+IV+    L++P R IS ++  I  IT+ M+
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            +K  IE+V+P + G   +   VAHNA+FD R L          +    +I T+ LA+ L
Sbjct: 418 ENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL 477

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI---DIMNTSGWT 157
                YS  ++ +   L         HHRAL D  +TA + +   ++M   G T
Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIGIT 526


>UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CW68_HALOH
          Length = 1397

 Score =  189 bits (481), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V V  GK+++  S  V+P   I  +   +  IT  MV
Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMV 444

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
           +  P IE VI     +      VAHNA FD   L          ++    + T+ L+R L
Sbjct: 445 SRAPDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRAL 504

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQMA 162
            P +    +     R LNV+     +HHRA+ D   T+ + I+ +    N    T   + 
Sbjct: 505 LPDLSNHKLNTL-ARHLNVRLD---NHHRAVEDARATSEIFINFLSNIKNEGIETVPGIN 560

Query: 163 DITGR------PSLMTTFTFGKYRGKAVSDVAER-DPGYLRWLFNNLDSMSPEL 209
            ++ +      P+  T   F K + + + D+       +L + +     +   L
Sbjct: 561 RLSTKINWRELPTYHTVI-FAKNK-QGLKDIYRLVSESHLNYFYRKPRILKSHL 612


>UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17
           Tax=Fusobacterium RepID=A5TTA5_FUSNP
          Length = 1454

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 21/168 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V +  G+IV+  S L+ P RPI      I  IT+  V
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
           A++P I++VI  +    G    VAHNA FD   +          ++    I T+++AR L
Sbjct: 487 ANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDL 546

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           +P + KY    L KT  L ++      HHRA+ D   TA + I  ++ 
Sbjct: 547 FPDLKKYGLGDLNKTLGLALE-----KHHRAVDDSQATANMFIIFLDK 589


>UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria
           RepID=C9S0C0_GEOSY
          Length = 1444

 Score =  187 bits (476), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A+V V DG+I++       P  P+S   M +  IT+ MV
Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMV 488

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            D P  ++V+  +    G    VAHNASFD   L          ++    I T++LAR L
Sbjct: 489 KDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFL 548

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +P +K   +     +K +++      HHRA+YD   T  LL+ ++  +
Sbjct: 549 YPDLKNHRLNTL-CKKFDIELT---QHHRAIYDAEATGHLLMRLLKEA 592


>UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE
          Length = 1449

 Score =  186 bits (474), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 18/161 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + DG+IV+  S  V P   I  +   +  IT+ MV
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMV 494

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P I++V+P    + G+   VAHNA+FD   + +        +    + T+ LAR L+
Sbjct: 495 NGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLY 554

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           P +K   + L   + L +      +HHRA+ D   TA +L 
Sbjct: 555 PDLKKVKLNLV-AKHLGISLE---NHHRAVDDAKATAEILK 591


>UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE
          Length = 1427

 Score =  184 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 18/166 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + +GK+V+  S  V P+R I  + + +  I + MV
Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV 472

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P IE+V+P    +      VAHNA+FD   + +             + T+ L + L+
Sbjct: 473 KDAPKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLY 532

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           P +K   + +   + L +   P L+HHRA+ D   T  +L+     
Sbjct: 533 PELKRYKLNVV-AKHLGI---PLLNHHRAVEDAKTTGDILLKAFED 574


>UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae
           RepID=C7NEP7_LEPBD
          Length = 1459

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET G       I+EI +V +   +++   S  V P+ PI  +   +  IT+ M
Sbjct: 424 IYVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEM 483

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106
           VA+   IE V+P +         VAHNA FD   + +   +         I T+ LAR L
Sbjct: 484 VANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTL 543

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            P ++ Y    L K   + ++T     HHRA+ D   TA +    +N
Sbjct: 544 LPELRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLN 585


>UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z9S3_9FIRM
          Length = 1474

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 20/210 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V +GKI++  S  V P+ PI  +   +  I + MV
Sbjct: 409 YVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMV 468

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P IE+++P    +      VAHN+ FD   +         E     I T+ ++R L 
Sbjct: 469 IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLI 528

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
            G+ +Y    + K   + +      HHHRA+ D   TA + + +            D   
Sbjct: 529 IGLGRYKLDNVAKALGIVLD-----HHHRAVDDAECTALIFLKLCKMLEGKGIDNLDELN 583

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
           R    +     K        + +   G + 
Sbjct: 584 RQGKQSKNLIDKLPAHHAIILVKNQVGRVN 613


>UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWI2_ALIAD
          Length = 1440

 Score =  183 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 23/194 (11%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + DTET GL      ++EIA+V V  G+IV+  + L+ P+R + P+ + +  IT  MV
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMV 486

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A +P + + +     +      VAHNA FD   L +              I T+ LAR L
Sbjct: 487 AGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVL 546

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162
           +PG K   +    T+K +V     ++HHRAL D   TA + + ++  +          M 
Sbjct: 547 YPGEKNYKLKTL-TQKFSVDL---VNHHRALADSEATAKVFVHMLKDAKARGIHNLLDMN 602

Query: 163 DITGRPSLMTTFTF 176
            + G+  +     F
Sbjct: 603 HLRGQIDISRVRPF 616


>UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z7T3_9FIRM
          Length = 237

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 28/212 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G++     I+EI +V V DGK V+  S L+ P   +SP    +  IT+ M+
Sbjct: 5   YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEML 64

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            DKP+IE+V+P +    G +  + HN  FD   L +             I T+K+AR+  
Sbjct: 65  KDKPFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTL 124

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            G++   +        N       +HHRA  D  +T+ L   +M   G         T  
Sbjct: 125 KGLESRGLE----YLCNYYGIADENHHRAFNDAEVTSKLYNVLMEKFG---------TES 171

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199
           P L   +    ++ K +  + +R   YL+ L 
Sbjct: 172 PGLFEPYQL-VFKAKKMQPITDRQKKYLKDLM 202


>UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UG6_CYTH3
          Length = 449

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 22/192 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  IID ET G       I+EIA       KI +    L+ P+R I     ++  I   M
Sbjct: 2   MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106
           VAD P   DV      +     +VAHN +FD       L  +   +    +CT++L+R++
Sbjct: 62  VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163
           +PG+  YS   L  +  ++VQ     + HRA  D   T  LL  ++  +T G+  + +  
Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKK 176

Query: 164 ITGRPSLMTTFT 175
            +    L     
Sbjct: 177 NSKETLLPANLP 188


>UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA
          Length = 231

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 30/231 (12%)

Query: 6   DTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           DTET G++     ++E+A  D +  +       L+ P  PI P+A AIH IT+ MVA+ P
Sbjct: 7   DTETTGIKADRDYVIELAVYDPVGNR---TFERLINPGVPIPPEATAIHHITDEMVANAP 63

Query: 63  WIEDVIPHYY----GSEWYVAHNAS-FDRRVLPE---------MPGEWICTMKLARRLWP 108
              ++I  +     G    +AHN   FD   L            P +++ T+K ARR   
Sbjct: 64  SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168
            +    +   +     +      + HRAL D  +   +   +++    +  +   +  +P
Sbjct: 124 DLPRHTLQFLR----GIYGIAENNAHRALDDVIVLHQVFSAMLDDL--SIAEAYALMNQP 177

Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             +    FGK++G  +  V      Y++WL        PE  L L+   E 
Sbjct: 178 KDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFEK 224


>UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes
           RepID=Q67P96_SYMTH
          Length = 1475

 Score =  183 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 20/178 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I+E+ +V    G+IV+     VRP +P+ P+   +  IT  M+
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDML 513

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
              P   + +     + G    VAHNA FD   L          E     + T+ LAR +
Sbjct: 514 EGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAV 573

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
            P ++  ++A   T++L V   P + HHRA  D    A +L+ ++  +    E +AD+
Sbjct: 574 LPHMRSHSLA-ALTKELQV---PLVDHHRADADAKTAAMVLMKLLERA-EGVETVADL 626


>UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment)
           n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM
          Length = 821

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 23/182 (12%)

Query: 3   RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            + D ET G       I+EI +V + +GKI++ M   V P  PI  +   +  I ++MV 
Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVM 578

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
           D   IE+V+P +         VAHNA FD   +               I T+ L+R L P
Sbjct: 579 DAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLP 638

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMADI 164
            + ++    + K  K+ +     LHHHRA+ D   TA +    ++I+   G ++ +  D 
Sbjct: 639 RLNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYLKELEILEQRGVSSLEEIDS 693

Query: 165 TG 166
             
Sbjct: 694 LE 695


>UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA
          Length = 293

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 21/238 (8%)

Query: 2   LRIIDTETCGLQ--GGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + I+DTET G +    I++++ + +  + +I      LV+P  PIS +AMA+H IT  MV
Sbjct: 3   IVILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMV 62

Query: 59  ADKPWIEDV-----IPHYYGSE-WYVAHNASFDRRVLPEMPG----EWICTMKLARRLWP 108
            DKP I+       +      E   V HNA FD  +L +       + I T ++ + L P
Sbjct: 63  EDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIP 122

Query: 109 GIKYSN------MALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
             K+S       + LYK  K +  +    ++ H AL D  +   L   ++       E++
Sbjct: 123 EGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLVTNFEKNVEEL 182

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
            ++T +P L   F  GKY+ + + DV  +DP Y+ ++  +L  + P+++ +++H+LEN
Sbjct: 183 VELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239


>UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ
           RepID=B3E5V5_GEOLS
          Length = 168

 Score =  180 bits (458), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 16/166 (9%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++DTET GL    QG ++EI +V V +G+I   ++ L+    PIS  A  +H I+E M
Sbjct: 4   VIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQM 63

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           +A +P  ++V P    + G+   VAHNA+FDR  +          +   W CT++L+RR 
Sbjct: 64  LAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRK 123

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            P +    +          + P  +  HRAL D  + A + ++++ 
Sbjct: 124 LPRLMNHKLETVYKHLFG-ELPEEVQRHRALDDARMAARVWVELLK 168


>UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RJC1_MOOTA
          Length = 921

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EIA+V +  G I      LV P RPI P    +  I++AMV
Sbjct: 6   YVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMV 65

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110
            + P + +V+P     +     V HN +FD   L +  G       + T+ L+R L+P +
Sbjct: 66  REAPPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCL 125

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
               +  Y ++ L ++      HHRAL D   TA LL ++
Sbjct: 126 ASHRLD-YMSKYLTLE---ATGHHRALDDVLTTARLLENL 161


>UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas
           atlantica T6c RepID=Q15TC4_PSEA6
          Length = 769

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI +V VID K+V+  S L+ P+R +      +  I+  MV
Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMV 663

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P   +VI     +     +VAHN +FD                   +CT++  R+ +
Sbjct: 664 EDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRKYY 723

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           PG   YS   L K   L++      +HHRAL D    A LLI ++N    T 
Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI-MVNEKKHTV 769


>UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales
           RepID=C7GFY3_9FIRM
          Length = 697

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 23/191 (12%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V+ G+I    S  V P+ PI  +   +  I + MV
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV 534

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P IE ++P    + G    VAHNA FD   +         E     I T+ LAR L 
Sbjct: 535 IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILL 594

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMAD 163
           P + ++    + K   ++++     +HHRA+ D   TA +    + +++  G       +
Sbjct: 595 PQLNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVN 649

Query: 164 ITGRPSLMTTF 174
             G+ S  T  
Sbjct: 650 QMGQASPETIM 660


>UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales
           RepID=A0QF17_MYCA1
          Length = 643

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 30/217 (13%)

Query: 2   LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52
             ++D ET G +           I EI +V V DG ++   + LV P R I PQ M +  
Sbjct: 40  FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTG 99

Query: 53  ITEAMVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPGE---------WI 97
           IT AMV+D P I+ V+P +            VAHNA FD   L     +          +
Sbjct: 100 ITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVL 159

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-W 156
           CT++LARR+    +  ++ L    +L          HRAL D   T  +L  ++   G  
Sbjct: 160 CTVRLARRVLSREEAPSVRLASLARL--FAVTTQPTHRALDDARATVDVLHALIERVGNQ 217

Query: 157 TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
                AD+ G    +   T  + R + +++   R PG
Sbjct: 218 GVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPG 251


>UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1
           RepID=A3HRT4_9SPHI
          Length = 456

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 23/199 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G      GI EIA + + DG K++     L+ P++ I      +  I  +M
Sbjct: 3   FAIVDIETTGGAASTCGITEIA-ILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSM 61

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           V+D P  E++   +        +VAH+ +FD   +         E   + +CT++LAR++
Sbjct: 62  VSDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKI 121

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADI 164
            PG+  YS   + +T+K+     P L  HRA+ D   TA L   ++     T  + +   
Sbjct: 122 IPGLSSYSLGRICETQKI-----PILARHRAMGDARATAILFDQMLKKDSQTVFQALKKN 176

Query: 165 TGRPSLMTTFTFGKYRGKA 183
           +G   L   F   KYR   
Sbjct: 177 SGEAFLPPNFPITKYRKIP 195


>UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus
           RepID=C7RGM9_ANAPD
          Length = 1365

 Score =  178 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 76/193 (39%), Gaps = 22/193 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +  V  GKI    + LV P+  I  + + I  IT  MV
Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMV 408

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P IE+V+P    +      V  N  FD   + E            ++ T+ +AR L+
Sbjct: 409 KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALF 468

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMAD 163
             +K  ++     RKL +   P  +HHRA  D   TA + I +    M   G     +  
Sbjct: 469 SDMKKFSLDKI-ARKLEI---PAFNHHRASDDARATAQIFIKMFKMIMEEDGINLSTINK 524

Query: 164 ITGRPSLMTTFTF 176
           +           F
Sbjct: 525 LKSHWPKSKHEYF 537


>UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus
           moniliformis DSM 12112 RepID=D1AWZ0_STRM9
          Length = 1465

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 19/188 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + +GK+++  S  V P   I  + + +  I + MV
Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMV 463

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D   I+ V+P    +      VAHNA FD   +         E    +I T++ ++ L 
Sbjct: 464 KDSDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILV 523

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMADITG 166
             +K  N+    T++ N++     +HHRA+ D   TA L   +++       E++ D++ 
Sbjct: 524 DDVKRFNLDTL-TKRFNIKLE---NHHRAVDDANATAELFKKLLSLVSANGVEKLTDVSE 579

Query: 167 RPSLMTTF 174
           +       
Sbjct: 580 KLEKKPKI 587


>UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=B4S124_ALTMD
          Length = 715

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 20/162 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI  V ++ GK V+    L+ P R I      +  I++ MV
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMV 602

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           AD P   +V   I  +     +VAHN +FD   + +             +CT++  RR  
Sbjct: 603 ADAPLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTH 662

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           PG+  YS   L K   ++++      HHRAL D    A LL 
Sbjct: 663 PGLSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELLK 699


>UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis
           L1-82 RepID=C7GFC6_9FIRM
          Length = 226

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 24/199 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      ++EI++V V +GKIV+  S LV P RPI   A +++ I++ MV
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMV 76

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHN-ASFDRRVL---------PEMPGEWICTMKLARR 105
            +    E V+P +    G +    HN A FD + L           +  ++I T+ +A+ 
Sbjct: 77  ENARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKL 136

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD- 163
            +P  K+  ++ L +   ++ +       HRAL DC +   +   +   SG T+ +  + 
Sbjct: 137 CFPEWKHRKLSDLAEHYGISTKG-----AHRALADCRMNQQVFELMAKESGGTSAKQTEE 191

Query: 164 -ITGRPSLMTTFTFGKYRG 181
            I  R  L      G++ G
Sbjct: 192 KICPRCGLALKKRNGRFGG 210


>UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales
           RepID=Y2191_MYCTU
          Length = 645

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 26/216 (12%)

Query: 2   LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52
             ++D ET G +           I EI +V V  G ++   + LV P   I PQ + +  
Sbjct: 43  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTG 102

Query: 53  ITEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTM 100
           IT AMV + P I+ V+P    + G    VAHNA FD   L              + +CTM
Sbjct: 103 ITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTM 162

Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAE 159
           +LARR+    +  ++ L    +L          HRAL D   T  +L  ++   G     
Sbjct: 163 RLARRVLSRDEAPSVRLAALARL--FAVASNPTHRALDDARATVDVLHALIERVGNQGVH 220

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
             A++  R  L       + +      +  R   YL
Sbjct: 221 TYAEL--RSYLPNVTQAQRCKRVLAETLPHRPGVYL 254


>UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
           29149 RepID=A7B5W2_RUMGN
          Length = 219

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 22/197 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      I+EI++V V  G + +  S LV P R I  QA  ++ IT+ MV
Sbjct: 15  YTVFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMV 74

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVL---------PEMPGEWICTMKLARR 105
           ++ P I + +  +    G +  V HN  SFD + +           +  ++I T+ +AR+
Sbjct: 75  SEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARK 134

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
             P +K+  +  L +   ++ +       HRAL DC +      ++      +   +   
Sbjct: 135 CLPELKHHRLTDLAEHFGISSKG-----AHRALNDCVMNQKCFEEMAKLQKKSVVFVCPK 189

Query: 165 TGRPSLMTTFTFGKYRG 181
            G   +     +G++ G
Sbjct: 190 CGGEMIRRNGRYGEFWG 206


>UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2
           Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5
          Length = 441

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 35/237 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL+     I+EIA+    + +I++  + LV P+  I P    I+ I   MV
Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMV 190

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P I++V+P   ++ G    VAHNA FD + L          +    I T+ ++R+L+
Sbjct: 191 KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLF 250

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             I+   +   K   LN+        HRAL DCY+   + ++  +T     + +A+I   
Sbjct: 251 SEIENHKLGTIKEY-LNIDVQDS---HRALPDCYVCGQIYLEY-STKEKNKKALANIKLH 305

Query: 168 PSLMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFNN----LDSMSPELRLTLK 214
             +      G  + +  S V E      +D  Y+R+ F +    + +    LRL LK
Sbjct: 306 SDI------GLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356


>UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1MZX4_9GAMM
          Length = 738

 Score =  177 bits (449), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G    Q  + E+  V V++G+IV+    L+ P R I      +  I+  MV
Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMV 632

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           ++ P  +DV   I  +     +VAHN +FD                   +CT++++R+  
Sbjct: 633 SNAPVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYL 692

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           PG   YS   L     ++++     +HHRAL D    A +   ++     T+
Sbjct: 693 PGHSSYSLGKLCAALDIDLE-----NHHRALDDAKAAAHVF-RLIQEKRQTS 738


>UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=B0MME8_9FIRM
          Length = 1605

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + + D ET GL      I EI +V + + +IV   S  V P  PI      +  IT+ MV
Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMV 650

Query: 59  ADKPWIEDV----IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           AD P  EDV       + G+    AHNA FD   +               + T+ +A+  
Sbjct: 651 ADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAA 709

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
             GIK Y    + K  KL         HHRA+ D  +   + + I+N +  TA+
Sbjct: 710 LKGIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758


>UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ
          Length = 934

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 27/187 (14%)

Query: 2   LRIIDTETCG-----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
             ++D ET G      +  I +IA+V V DG+I+   S  + P R I P    +  I E+
Sbjct: 5   YVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDES 64

Query: 57  MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
           MV   P  +DV P          +VAHN  FD   L          E+    + T++LA+
Sbjct: 65  MVKQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 124

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P    Y    L K  +L    P     HRA  D   TA L +  +N        T +
Sbjct: 125 ILLPTADSYKLRDLAKQHELEHDQP-----HRADSDALATAELFLQFLNEIEKLPLVTLQ 179

Query: 160 QMADITG 166
            + +++ 
Sbjct: 180 SLYELSD 186


>UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BDG4_9ACTO
          Length = 550

 Score =  176 bits (447), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 86/191 (45%), Gaps = 29/191 (15%)

Query: 3   RIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
            ++D ET GL  G  I EI +V + DG +V+  S LV+P RPI P   ++  IT AMVAD
Sbjct: 30  VVVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 89

Query: 61  KPWIEDVIPHYY--------GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLA 103
              I  V+ H+          S   VAHNASFD   L         P      + T+ LA
Sbjct: 90  AAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALA 149

Query: 104 RRLWPG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT- 157
           R   P   ++   +    +      T P    HRAL D   TA +    ID++  +G T 
Sbjct: 150 RLALPRPLVRNHKLGTVASY-FGTATVPE---HRALGDARATAEILLGFIDLLAAAGATD 205

Query: 158 AEQMADITGRP 168
            E +  +T + 
Sbjct: 206 VEDLIVLTDQA 216


>UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria
           RepID=A9KMW9_CLOPH
          Length = 1527

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            + D ET G       I+EI +V +  G IV+  S  + P+ PI      +  IT+ MV 
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYHIQKLTSITDEMVI 557

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
               IE+++P +       + VAHNASFD   + +        +    + T+ LAR L  
Sbjct: 558 GSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLN 617

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADITGR 167
            +    +     + L++      +HHRA+ D   TA + +  +        E +A I  R
Sbjct: 618 HLNNFKLDTV-AKALSISLE---NHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQI-NR 672

Query: 168 PSLMTTFTFGK 178
              +T     K
Sbjct: 673 AEEVTPDVIKK 683


>UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes
           RepID=C0FNH3_9FIRM
          Length = 228

 Score =  176 bits (446), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 29/204 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       ++EI++V V  GK+V   S LV P RPI   A  ++ I++ MV
Sbjct: 17  YVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMV 76

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105
           A++P    V+P +    G +  V HN   FD + L          ++  +++ T+++A+ 
Sbjct: 77  ANEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKL 136

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-------SGWT 157
            +P  ++  ++ L +   ++ +       HRAL DC +   +   +             +
Sbjct: 137 CFPEWRHRRLSDLAEHYGISTRG-----AHRALTDCKMNQQVFEYLAKELEKMPAAKKQS 191

Query: 158 AEQMADITGRPSLMTTFTFGKYRG 181
            E++    G P       FG++ G
Sbjct: 192 KEKICPECGLPMKKRNGRFGEFWG 215


>UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0L3L4_MAGSM
          Length = 237

 Score =  176 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 21/192 (10%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++DTET G        I+EI  V++++ +  +     V P+R I   A  +H IT+A 
Sbjct: 4   LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG-----------EWICTMKLA 103
           VA+ P  +++   +    G +  V HNA FD R L                  I T+ LA
Sbjct: 64  VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           RR +PG   +  AL K   ++     G   H AL D ++ A + +++M  + ++ E  AD
Sbjct: 124 RRKFPGSTVNLDALCKRLGVDNS---GRTFHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180

Query: 164 ITGRPSLMTTFT 175
            +GR +  +   
Sbjct: 181 ESGRIAQPSDSP 192


>UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus
           RepID=C6D2T0_PAESJ
          Length = 1437

 Score =  176 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 21/169 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A V + +GK V+  S  + P   I      +  I + MV
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
            D P +E  +     + G    VAHNA FD   +         P++    + T++LAR L
Sbjct: 481 KDAPELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFL 540

Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
            P +K   +  L    K+++      +HHRA+ D      +L  ++N +
Sbjct: 541 HPTMKNHRLNTLSAKYKVSLD-----NHHRAVDDSVALGGVLFGLINDA 584


>UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1
           Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA
          Length = 754

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 24/214 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET GL       ++E+ +V+++DG+I      L  P  P+S +  AI  I+ AM
Sbjct: 544 FVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAM 603

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106
           + D P + +VI     +      VAHNA FDRR L             E +CTM+L +R 
Sbjct: 604 LVDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRA 663

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           +PG+    +A        V  P  +  HRAL D   TA L + +         +    T 
Sbjct: 664 YPGLGSYKLAFL-AEHAGVALPDAM--HRALADAMATAELFLVMREREACPPPE----TQ 716

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDP--GYLRWL 198
            P++             +   A R P  G+ RWL
Sbjct: 717 PPAIAEPAADRAVLASTLPPTAPRQPASGWRRWL 750


>UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes
           RepID=A6EU25_9BACT
          Length = 472

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 20/189 (10%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             +ID ET G   QG + EI  + V + +IV+  S L+ P+  I     A+  IT+ MV 
Sbjct: 8   FTVIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVT 67

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           D P   DV   I        +VAHN +FD   L +           + +CT++L+R+L P
Sbjct: 68  DAPRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIP 127

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADITG 166
           G+  YS   L ++  +++     L  HRA  D   T  L + ++   S    E   +   
Sbjct: 128 GLPSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFLN 182

Query: 167 RPSLMTTFT 175
           + S   T  
Sbjct: 183 KSSREATLP 191


>UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales
           RepID=Q3IIU0_PSEHT
          Length = 730

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 20/170 (11%)

Query: 1   MLRIIDTETCG-LQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G L+GG  I EI  V V  GK+++  + LV P R I     ++  I+++M
Sbjct: 566 IYSVVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSM 625

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V++ P   D+   +        +VAHN +FD   + +             +CT+  +R+ 
Sbjct: 626 VSNAPVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCTVVESRKA 685

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           + G+K YS   L K   LN+ +     HHRAL D   TA LL+ I  +  
Sbjct: 686 FAGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQKSQS 730


>UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis
           excentricus CB 48 RepID=C5SPM0_9CAUL
          Length = 717

 Score =  174 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G Q     + EI +V + +G+I++    L+ P+R I P    +  I+ AM
Sbjct: 544 VYTVVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAM 603

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           V D P   D+      +     +VAHN +FD   L               +CT+   RR 
Sbjct: 604 VRDAPRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRH 663

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +PG+    +    +R+  ++     +HHRAL D    A LL  ++N  
Sbjct: 664 FPGLAAYGLGPL-SREFGIELK---NHHRALSDAMAAAELL-KLINER 706


>UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN
          Length = 234

 Score =  174 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 23/237 (9%)

Query: 1   MLRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ML  +D ET GL+    I  I  + V +  I +    LV   + IS +A +I+ IT  M+
Sbjct: 1   MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59

Query: 59  ADKPWIED------VIPHYYGSEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108
            DKP  +D      +  +   S   +AHN +FD ++L +      G+ + T+++ + L P
Sbjct: 60  KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119

Query: 109 G--------IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
                    ++Y        +K   +    +  H AL D      L   ++       ++
Sbjct: 120 ECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIKEH--DE 177

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           +  ++ +  L+  F FGKY+G+ + +++  D GYL W+  ++  +  +LR +++  L
Sbjct: 178 LVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIRGVL 234


>UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1
           Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM
          Length = 1415

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 20/167 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +V ++DG I    S L+ P   I  +   + RIT A+V
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            ++P IE+V P    +      VAHNA FD   +         +     + T+  AR   
Sbjct: 461 ENEPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATV 520

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
              K  N+A L K   +++     +  HRA+ D   TA L I ++N 
Sbjct: 521 KDTKKFNLATLCKKFGVSL-----VGAHRAVNDAEATAHLFIKLINK 562


>UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS
          Length = 1446

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+E+A+V + DG++V      + P+RP+S     +  IT  MV
Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMV 484

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
                  +V+     + G      HN SFD   L           +    I T++L+R L
Sbjct: 485 HGAKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRML 544

Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
            P  K   + +L K  K+N++     HHHRA  D   T  LL  +   +    + +
Sbjct: 545 HPEYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLLYKLEKEAAENYDMV 595


>UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales
           bacterium RepID=Q1EM31_9BACT
          Length = 1428

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 24/195 (12%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET GL      I+EI ++ +   +++   S  V+P++ +S    ++  ITE M
Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-----EMPGEW----ICTMKLARR 105
           +++   I++V+P    +      VAHNASFD   +         G+W    I T+ LA+ 
Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQM 161
           L+    YS   + K  KL         HHRA  D  +TA +L   +            ++
Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVLKKFVQLAKKRGVQNVNEL 591

Query: 162 ADITGRPSLMTTFTF 176
             +    +L +   F
Sbjct: 592 EKLRKNQNLDSLKPF 606


>UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus
           RepID=C5D3B0_GEOSW
          Length = 921

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             IID ET G        I+++  V + +GKIV+  S    P+R I P    +  ITE M
Sbjct: 5   FVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQM 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105
           VAD P   +    +       ++VAHN SFD +          LP   G  I T++LAR 
Sbjct: 65  VADAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARI 124

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++P    Y    L K   ++   P     H+A  D  +TA L I ++N        T + 
Sbjct: 125 VFPTAESYKLGDLAKQLHIDHDQP-----HQADSDAEVTAKLFIALLNRLRQLPFITLQH 179

Query: 161 MADIT 165
           +  ++
Sbjct: 180 LKRLS 184


>UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales
           RepID=Q252U5_CHLFF
          Length = 249

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 28/236 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +   +D E  GL      I+E A+       +++ M  L+ PDR IS ++  IHRI++AM
Sbjct: 8   IFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAM 67

Query: 58  VADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE----------WICTMKLA 103
           + D+P I +V P         ++ V H+  FD +VL +               I T++LA
Sbjct: 68  LKDQPRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLA 127

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           +        S  AL     +     P   +HRA+ D  I   +          T EQ+  
Sbjct: 128 KEYGDSPNNSLEALAVHFNV-----PYDGNHRAMKDVEININIFKHFCKRF-RTIEQLKQ 181

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +  +P  M     GK++G+  S++      YL+W   +      +L  +++H +++
Sbjct: 182 VLSKPIKMKYMPLGKHKGRCFSEIP---LSYLQW--ASKMDFDADLLFSIRHEIKH 232


>UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH
          Length = 939

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 33/223 (14%)

Query: 2   LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        I+EI  V +   +I++  +    P +PI P    +  I++  
Sbjct: 4   FVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGISDDD 63

Query: 58  VADKPWIED---VIPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           VAD P   +    I       + +AHN +FD   L           +  + + T++L+R 
Sbjct: 64  VADAPLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQVLDTVELSRI 123

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L+P    Y    L     L    P     HRAL D Y+TA L   +M+            
Sbjct: 124 LFPTAPGYKLSQLSDHFNLQHDDP-----HRALSDAYVTAKLFQKLMDKINQLP------ 172

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207
                  T   + K  G  +SD+ E     L  L  ++D  S 
Sbjct: 173 -----YETIEQWLKLEGAFISDIKEILLNRLDELAFSIDQDSA 210


>UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=A8H432_SHEPA
          Length = 215

 Score =  173 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 18/173 (10%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL        +EI +V + DGK+V+    L+ P   IS    +   I+ AM
Sbjct: 18  VIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAM 77

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           +AD P  E+V      + G    VAHNASFD+R L            G++ C+M +ARRL
Sbjct: 78  LADAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRL 137

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
           +       +    + K           HRAL D  +TA+L + ++       +
Sbjct: 138 YQAAPNHKLGSLVSYK---NIQHDGVFHRALADSEMTASLWLAMLEDLQQDYQ 187


>UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae
           RepID=C1DWW1_SULAA
          Length = 205

 Score =  173 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 20/167 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57
             I+D ET GL      I+EIA++ V  G +V+    LV+P    I      +  IT A+
Sbjct: 11  FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNAL 70

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V DKP IE+V P +     +   VAHNA FD   L           +    +CT  LA+R
Sbjct: 71  VVDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKR 130

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           L+P +   ++        N+   P    HRAL D  +T  L   I++
Sbjct: 131 LFPDLPSKSLVNL-AYHFNI---PYNKKHRALEDALVTYELFKKIID 173


>UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales
           RepID=B8FYI4_DESHD
          Length = 1447

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 23/197 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI  + +  GKI++     V P++PI  + + +  IT+ MV
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMV 483

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D   I+ V P    +      VAHNA FD   L         +    ++ T+ LA+ L+
Sbjct: 484 RDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELF 543

Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163
           P  K Y    + K   + V+       HRAL D   T  +    +D++   G    +  D
Sbjct: 544 PDYKTYKLGRIAKNLGIKVEV-----AHRALDDVGTTVKVFNIMVDMLKERGVETLEDID 598

Query: 164 ITGRPSLMTTFTFGKYR 180
           +           + K +
Sbjct: 599 LKAADEAARKDEYKKLK 615


>UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales
           RepID=A1SLE5_NOCSJ
          Length = 601

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 28/212 (13%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I EI +V V  G+++     LV P   I      +  I+ +M
Sbjct: 30  FCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSM 89

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP---------GEWICTMKLARR 105
           VAD P +E  +P    +      VAHNA FD   L              E + T +LARR
Sbjct: 90  VADAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARR 149

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161
           +       N  L    K          +HRAL D   T  +L  +M   G     T E++
Sbjct: 150 VVSRDDAPNCKLSSLAK--AFGSTTTPNHRALSDARATVDVLHGLMERLGGVGVHTLEEL 207

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
              + R S          R + +++     PG
Sbjct: 208 QTFSSRVSSAQR------RKRHLAEGLPHAPG 233


>UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton
           thalassium ATCC 35110 RepID=B3QSB2_CHLT3
          Length = 578

 Score =  172 bits (436), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 29/218 (13%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G    +  I+EI ++   +G+ V  +  LV P++ IS        IT +MV
Sbjct: 24  FAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMV 83

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P I+ ++     ++    +VAHN  FD   +          ++   W+CT +LARRL
Sbjct: 84  DNAPVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRL 143

Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQ 160
            P   K +   L K   + V+     + HRA  DC  T  LL +++          TAE+
Sbjct: 144 LPTQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELIILAQEQHGVETAEE 198

Query: 161 MADITGRPS---LMTTFTFGKYRGKAVSDVAERDPGYL 195
           +  +  +           F K R   ++    +   YL
Sbjct: 199 LLSLQFKAIRNFKREPRHFSKIRNTVLNKFPTKSGVYL 236


>UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM
          Length = 1010

 Score =  171 bits (434), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 22/170 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      ++EI++V V  G++    S LV P R I P A  ++ IT+ MV
Sbjct: 25  YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGITDKMV 84

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVL---------PEMPGEWICTMKLARR 105
           A      +V+  ++   G    V HN  SFD + L              +++ T+ LAR 
Sbjct: 85  AGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLLLARA 144

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
             P + +  +  L +   ++ +       HRAL DC++   +   +   +
Sbjct: 145 ALPELSHHRLVDLAEHYGISAKG-----AHRALNDCHMNQKVYGKLAEEA 189


>UniRef50_Q0G0B0 Exodeoxyribonuclease X n=2 Tax=Aurantimonadaceae RepID=Q0G0B0_9RHIZ
          Length = 266

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDV--IDGKIVNPMSHLVRPDRP-ISPQAMAIHRIT 54
           ++R+IDTET GL   +  ++EI SVD+  + G I NPM     P    IS  A  +H+IT
Sbjct: 22  IVRVIDTETAGLRLEEDAVIEIGSVDLDLVTGAIFNPMQTFCDPGGAVISDGARRVHQIT 81

Query: 55  EAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSN 114
           + M+   P   D +  +  +E Y A  A FDR  L  + G W+CT KLA R +P ++   
Sbjct: 82  DEMLVGAPPFSDAVKPF-NTETYAAQRADFDRSRLR-LTGRWLCTHKLALRAFPNVRAHG 139

Query: 115 M-ALYKTRKLNV----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI----- 164
           + +L K   L++    Q   GLH HRAL+D   TA LL  I          ++D      
Sbjct: 140 LQSLVKYVPLDLSSVDQMLAGLHPHRALFDAVCTAVLLRRIAEELTPHCHDLSDFLERAE 199

Query: 165 --TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
             +  P+L+    FG+++G  + +V      YL+WL      M+ +   T K  L
Sbjct: 200 KVSNEPALLAKLRFGRHKGIPIREVPT---DYLQWLVAEP-EMNADAVFTAKRQL 250


>UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A497_GEMAT
          Length = 214

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G +      I EIA V V  G++    S LV P+RPI P   ++  IT  M
Sbjct: 6   FAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDM 65

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V D+P   ++   +        +VAHNA FD R +          E+ G  +CT++ AR 
Sbjct: 66  VRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARA 125

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
             P +   ++  + TR   ++       HRA  D   TA  L  ++N + 
Sbjct: 126 ALPQLSRRSLD-HVTRYFGIEIAA---RHRAAGDALATAHALCRMLNIAS 171


>UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1
           RepID=C7RJN1_9PROT
          Length = 735

 Score =  171 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET G++      I++I +V +++G+++       LV P+R I P+ + IH I++
Sbjct: 545 YTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISD 604

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV  +P IE V+P    +      VAHNA+FD R L               + T+ L+ 
Sbjct: 605 DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSG 664

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            L P  +     ++ +   + ++       H AL D   TA + + ++            
Sbjct: 665 VLHPNQESHQLDSIAERLGIGIE-----DRHNALGDACATAEVFLKMLPLLAQMGITTLR 719

Query: 164 ITGRPSLMTTFTFGKY 179
                S  T F   KY
Sbjct: 720 QALEASEKTYFARVKY 735


>UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae
           RepID=B0B7H7_CHLT2
          Length = 232

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 29/225 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L   DTET G Q     IVE+A+    +G        LV P+ PI  +A  IH IT A V
Sbjct: 4   LIFYDTETTGTQIDKDRIVELAA---YNGTTSESFQTLVNPEIPIPAEATKIHGITTAEV 60

Query: 59  ADKPWIEDVIPHYYG----SEWYVAH-NASFD---------RRVLPEMPGEWICTMKLAR 104
           AD P   +    +          VAH N +FD         R  L E     I ++K A+
Sbjct: 61  ADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWAK 120

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMAD 163
           +    +   ++   +     V        HRAL D      +   ++ + S      + +
Sbjct: 121 KYRTDLPQHSLQYLR----QVYGFEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLLN 176

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
            T  P +     FGKY+GK +S+V      Y+ WL      + PE
Sbjct: 177 ETCHPRIF-KMPFGKYKGKPLSEVP---SSYIAWLQKGDYLLQPE 217


>UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter
           hongkongensis HLHK9 RepID=C1DBV5_LARHH
          Length = 493

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G    +  I EI  V+V  G +    S LV P +PI P    +  I++AMV
Sbjct: 6   YVIVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           A+ P   ++ P        +  +AHNA FD   L             + +CT+KL+RRL+
Sbjct: 65  AEAPPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLY 124

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           P   K+S  +L     ++V   P    HRAL D       L   +   G 
Sbjct: 125 PQHAKHSLDSLIARHGIDV---PPGMRHRALGDAEAVYVFLQTAVAELGQ 171


>UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria
           RepID=A8EU91_ARCB4
          Length = 247

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 28/245 (11%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             + DTET G   +  +++  ++ V +   V     L     PI  +AM +H IT  ++ 
Sbjct: 4   YVLFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLE 63

Query: 60  DKPW-----IEDVIPHYYGSE-WYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPG 109
           +KP          +      E + +AHN +FD  ++     E   + I T++ A+ L+  
Sbjct: 64  NKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123

Query: 110 IKYSNMALYKTRKLNV---------QTPPGLHHHRALYDCYITAALLIDIMNT------S 154
           + Y  +  Y    L++         +    +  H A+ D  +    L  ++        S
Sbjct: 124 LPYHRLQ-YLRYALDLYKFEENEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182

Query: 155 GWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
               E++ ++T  P  + TF FGKY+G+ + +VA+ D  YL W+  +++ +  +++ TL 
Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242

Query: 215 HYLEN 219
             L N
Sbjct: 243 KVLGN 247


>UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium
           RepID=A4YW65_BRASO
          Length = 737

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 21/168 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI +V V + ++V     L+ P RPI  + + +  IT  MV
Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMV 622

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P   ++      + G   +VAHN +FD   L               +CT    RR +
Sbjct: 623 RDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRY 682

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           PG   Y    L     + +       HHRAL D    A LL +++NT 
Sbjct: 683 PGHTSYGLGKLCAIYGIELD-----DHHRALCDARAAAHLL-NLINTK 724


>UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division
           WS3 bacterium RepID=Q2Z0D2_9BACT
          Length = 965

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G+      I+E+ +V V+DG++ +     V P  PI    + +  I++A VA  
Sbjct: 31  LDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADVAGA 90

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARRLWP 108
           P I++V+P    + G    VAH+A FD   L E            G    T+ L R L P
Sbjct: 91  PTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTRALLP 150

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            +    +A       ++   P    HRA  D    + L + ++         + D
Sbjct: 151 RLPNHRLATAARF-FDI---PTGRSHRATDDARAVSDLFLALLGVLDQIGATVLD 201


>UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111 RepID=C1YUT4_NOCDA
          Length = 595

 Score =  170 bits (431), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 34/216 (15%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I E+ +V V  G++V   + LV P  PI      +  IT++MV
Sbjct: 26  FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPANITLLTGITQSMV 85

Query: 59  ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPG---------EWICTMKLA 103
           A  P +E+V+P              VAHNA FD   L                + T++LA
Sbjct: 86  ASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLA 145

Query: 104 RRLWP--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----SGWT 157
           R +      +   +A            P   +HRAL D   T  +L  ++         +
Sbjct: 146 RAVLARGETRNHRLATLAAY----FGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSS 201

Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
            E++  +T  P+            + +++    +PG
Sbjct: 202 VEELRAVTKPPTKAQRSR------RHLAEDLPEEPG 231


>UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU
          Length = 1440

 Score =  169 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 23/192 (11%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL     GI E  +V + +G++++ +   V P + IS +   +  IT  MV ++
Sbjct: 406 FDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMVRNE 465

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRLW-P 108
           P I+ ++P    ++     VAHNA+FD   L         PE+    I ++ LAR +  P
Sbjct: 466 PTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALARAILKP 525

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMADI 164
              Y    + ++ ++N         HRA YD  +   +       IM +  +    + ++
Sbjct: 526 MKSYRLGNVCRSYRVNYDDEV---AHRADYDAEVLGDVFNMMLHQIMQSGKYNLLDLCEL 582

Query: 165 TGRPSLMTTFTF 176
           TG       + +
Sbjct: 583 TGDDVYKIVYPY 594


>UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae
           RepID=B4W5N5_9CAUL
          Length = 241

 Score =  169 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        ++E+  +++ D           V P+R I P A+ +H IT+  
Sbjct: 5   IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDK 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGE--WICTMKLAR 104
           V D P   ++   +  + G    +AHNA FDR  +          + GE  WI T+KLA+
Sbjct: 65  VKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQ 124

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
             +PG+  S  AL K  K+++        H AL D  + A + +++        E++ D+
Sbjct: 125 ARFPGMPNSLDALCKRFKVSLVERTL---HGALIDARLLAEVYLELRGGK----ERVLDL 177

Query: 165 TGRP 168
           +  P
Sbjct: 178 SSAP 181


>UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA
          Length = 307

 Score =  169 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++DTET GL      I+EI  + V + +IV+    L++P   +     A+  IT  M+
Sbjct: 22  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDML 81

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-----MPGEWICTMKLARRLWPGI 110
            D P I  V   +  +   +  + HN SFD R L E     +  +++ TM+ AR+L+P +
Sbjct: 82  EDMPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPEL 141

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           K+  ++      L        + HRAL DC  T  L 
Sbjct: 142 KHHRLSD-----LTDYLGLHNNEHRALADCIATKELY 173


>UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95
           RepID=A9BIM3_PETMO
          Length = 1388

 Score =  169 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL+     I+EI +V + + KIV+    LV+P +P+S        IT  M+
Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQML 441

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
             +  IE+V+P +         VAHNA FD R + E             +I T+ L++ L
Sbjct: 442 EVEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSL 501

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADI 164
                Y    + +  KL         HHRA  D  ITA + + ++        E ++D+
Sbjct: 502 LTLKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDL 555


>UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales
           RepID=C7H779_9FIRM
          Length = 1417

 Score =  169 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 2   LRIIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + DTET GL  G+    EI +V V +G++V      V+P +PI+P+   +  IT  MV
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMV 456

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE--------MPGEWICTMKLARRL 106
           AD P  ++ +  +         VAHNA +FD R L              +I T+ +A+ +
Sbjct: 457 ADAPGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAM 516

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +PG+          + L +   P    HRA  D      +   ++
Sbjct: 517 YPGLHNYKQGTIN-KHLEL---PSYEAHRACEDSAALGRIFCVML 557


>UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis
           DSM 15434 RepID=C0W351_9ACTO
          Length = 547

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 21/173 (12%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G   G   I EI +V V  G++ + +S LV P R I  Q   +  IT AMV
Sbjct: 31  FVVVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMV 90

Query: 59  ADKPWIEDVIPHYY-------GSEWYVAHNASFDRRVL----PEMPGEW-----ICTMKL 102
           A  P + + +  +             VAHNA FD   L      +  +W     + T+ L
Sbjct: 91  AGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           ARR W   +  N  L           P    HRAL D   T  +L   +   G
Sbjct: 151 ARRAWTRSEVPNHRLATLASF--VGSPTRPTHRALDDARATVDVLHAALEVLG 201


>UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma
           RepID=Q2NJG3_AYWBP
          Length = 1572

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 29/192 (15%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EIA + + +G  +      + P + ++     I  IT+ M+
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEML 540

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRL 106
             +  I+ V+P +         VAHNASFD   L E          P   I TM L++R 
Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRY 600

Query: 107 WPGIK--YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           +  +   +S   L    K+ ++      HHRAL D   T+ + I +++       Q+AD 
Sbjct: 601 FSNLLKYFSLKRLATVFKVKLE-----DHHRALADATATSEIFIKMID-------QLADP 648

Query: 165 TGRPSLMTTFTF 176
           T  P       F
Sbjct: 649 TKDPKNEQVINF 660


>UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas
           subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL
          Length = 247

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        ++E+  ++++D           V P+R I   A+ +H IT+  
Sbjct: 5   IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDK 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104
           V D P    +   +  + G    +AHNA FDR  +    G           WI T++LA+
Sbjct: 65  VKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQ 124

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           + +PG+  S  AL K  K+++        H AL D  + A + +++        E++ D+
Sbjct: 125 KRFPGMANSLDALCKRYKISLVDRTL---HGALIDARLLAEVYLEL----KGGKERVLDL 177

Query: 165 TGR 167
           + R
Sbjct: 178 SSR 180


>UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae
           RepID=A7HNS3_FERNB
          Length = 1390

 Score =  168 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V   DGK+++     VRP++ ++ +++ I  ITE M+
Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDML 441

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P I  V+P    +      VAHNA FD   L         E    +I T++L++ L 
Sbjct: 442 KDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL 501

Query: 108 PG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161
                 +S   L     L         HHRAL D  +T  +   ++  +      T E++
Sbjct: 502 RNKIKSFSLDKLVDHFGLG-----AFQHHRALDDARVTVNVFWKLIELAKKKSITTFEKL 556

Query: 162 ADITGR 167
             +   
Sbjct: 557 NKLVEN 562


>UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales
           RepID=C7PV18_CHIPD
          Length = 456

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G      GI EIA        IV     L+ P  PI     ++  IT+ M
Sbjct: 1   MYAIVDIETTGGHASANGITEIAIYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           VA+ P  ++V    +     + +VAHN +FD   +         ++  + +CT++L R++
Sbjct: 61  VANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRKI 120

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163
            PG+  YS   L K+ +++V        HRA  D   T  L   ++  +T    A  ++ 
Sbjct: 121 IPGLPSYSLGNLCKSLEISVT-----QRHRAAGDAAATVKLFGLLLQQDTGKAIAHALST 175

Query: 164 ITGRPSLMTTFT 175
            +    L     
Sbjct: 176 HSKEQFLPPNLP 187


>UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2
           RepID=UPI0000510268
          Length = 581

 Score =  167 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57
             I+D ET G    +  I EI +V    G+++     LV+P+   ISP    +  IT AM
Sbjct: 31  FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAM 90

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP----EMPGEW-----ICTMKLARR 105
           V D P I  V+P +         VAHNA FD   +     ++   W     + T+ L+RR
Sbjct: 91  VDDAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRR 150

Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
           +     ++   ++         +  P    HRAL D   T  +L  ++   G     T E
Sbjct: 151 VVSRDEVRNHKLSTLAA-HFGTEVSPD---HRALSDAKATGEVLHRVLERFGGYGITTLE 206

Query: 160 QMADI 164
           ++A +
Sbjct: 207 ELATV 211


>UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma
           mali AT RepID=B3R0M5_PHYMT
          Length = 1449

 Score =  167 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+EIA++ + + +I++    L+ P + ++P    +  I+   +
Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDL 468

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            ++P I  ++P +     +   +AHN SFD   L          ++   +I T+ LAR  
Sbjct: 469 KNQPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYC 528

Query: 107 WP-GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
               ++Y N+ +L K  K++ +     +HHRA+ D  IT  +   ++N
Sbjct: 529 LDSNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571


>UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD
          Length = 551

 Score =  167 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 29/225 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L ++D ET G       I EI +V V  G+++      V P+RPI     ++  IT+A V
Sbjct: 21  LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARRL 106
           A+ P I  V+P    + G    VAHNA FD   L                + T+ LAR +
Sbjct: 81  AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140

Query: 107 WPGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161
           +   +  +  L    R +     P    HRAL D   T  +L  I+   G     T E +
Sbjct: 141 FRRDEVRDHRLSTLARHVGAGITPD---HRALSDARATVDVLHAIIERLGPSGASTLEDL 197

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206
                R S +        R K +++     PG  ++L      + 
Sbjct: 198 GTAHRRASPVQ------LRKKHLAEDVPPVPGVYQFLDAQGAVLY 236


>UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55
           RepID=UPI00016C5FA2
          Length = 285

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET        G I+EI +V + +G+IV+  S LV P+  I  +   + +IT  M
Sbjct: 17  FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDM 76

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVLPEMPG--------EWICTMKLARR 105
           V D P+I +V+     +      VAHNASFD  R L             + + T+ L++ 
Sbjct: 77  VKDAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVSLSKF 136

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            +P  K   +  L    ++     P   +HRA+ D   TA   + +       AE++ D
Sbjct: 137 TFPDKKKHTLIDLCSYLEV-----PLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187


>UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter
           RepID=A3JBF5_9ALTE
          Length = 483

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 27/210 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G       I EI       G+ V     LV P   ISP    +  I+ AMV
Sbjct: 13  FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMV 72

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           AD P  ED+            +VAHNA FD   +             + +CT+KL+RRL+
Sbjct: 73  ADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLY 132

Query: 108 PGIKYSN-MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164
           P  +  N  AL +   L       +  HRA+ D          ++   G    +  + ++
Sbjct: 133 PEFRRHNMDALIERHGL-----QQVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICEL 187

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
             RPS+ +           + ++      Y
Sbjct: 188 LQRPSIPSHLPLD-----TLQELPRGPGVY 212


>UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus
           RepID=Q81AF9_BACCR
          Length = 315

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET G       I+++A+V   + ++V+     V P+RPI  +  ++  IT   V
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV 69

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
           +D P IE+V+P +     +   VAHNASFD R          LPE   + I T+ LA++ 
Sbjct: 70  SDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKY 129

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                   +   K           L  H A  DC   AA+             ++     
Sbjct: 130 MKHATNHKLETLKRM-----LGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKV----N 180

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
           +  L  T  +     +AV ++   +   + WL
Sbjct: 181 KAMLDETAVY-----EAVKEILACNKRNVEWL 207


>UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani
           RepID=Q895Z5_CLOTE
          Length = 380

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 18/193 (9%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET GL      I+EI ++    G+IV   + L+ P   I  +A  I+ IT  MV
Sbjct: 84  FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMV 143

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P IEDV+P    +      VAHNASFD + L         E+    I T++L+R ++
Sbjct: 144 KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMY 203

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             +    +   K            + HRAL DC  TA + +D    +    ++  ++   
Sbjct: 204 TFLPNHKLTTIKEH----LCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNELEKA 259

Query: 168 PSLMTTFTFGKYR 180
              +      K  
Sbjct: 260 CFKVIKDMLNKNN 272


>UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI
          Length = 934

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 24/185 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I++ A+V +  GKI++  S L+ P + I      +  + ++M
Sbjct: 5   YVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSM 64

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           V+D P   ++ P         ++VAHN  FD   L E           G  I T++LAR 
Sbjct: 65  VSDAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELART 124

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161
           + P      ++    ++  +   P    H+A  D Y TA LL   +         T +Q+
Sbjct: 125 VLPCSDSYKLSDLSAKEGIMHDRP----HQADSDAYATAKLLHIFLERLEELPLTTIKQL 180

Query: 162 ADITG 166
             ++G
Sbjct: 181 LKLSG 185


>UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1
           RepID=A9DMS8_9FLAO
          Length = 457

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 77/186 (41%), Gaps = 18/186 (9%)

Query: 2   LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
             IID ET G    I EI+        IV+  + LV P+  I     A+  I  AMVAD 
Sbjct: 7   YTIIDVETTGRSNKITEISIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADA 66

Query: 62  PWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110
           P   ++            +VAHN +FD  V+         +   + +CT++L+R L PG 
Sbjct: 67  PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGF 126

Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169
           K YS   L K+  +++        HRA  D   T  +L  ++ T    AE       R S
Sbjct: 127 KSYSLGKLCKSLNIHIS-----DRHRARGDAAATV-ILFQLLLTKDAAAETFQKFLKRES 180

Query: 170 LMTTFT 175
              T  
Sbjct: 181 KEATLP 186


>UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1ART4_RUBXD
          Length = 560

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 16/146 (10%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G    +GGI E+ ++ ++ G++V+  S LV P RPI P    +  IT+ MV
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPG 109
           +  P   +VIP    +      VAHNA FD   L        +P   + T++LAR L PG
Sbjct: 93  SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHR 135
           ++   ++        V+  P   +HR
Sbjct: 153 LRRYRLS-ALVSHFGVRQAP---NHR 174


>UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales
           RepID=C5EVY5_9FIRM
          Length = 240

 Score =  166 bits (420), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 28/213 (13%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL+     I EIA++ V+DG I       V P R +      +  IT+ M+
Sbjct: 5   YIALDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGML 64

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           AD P IE++I     + G    + HN  FD   L         E   E I T+ L R   
Sbjct: 65  ADAPPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFM 124

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            G    N++       +V   P    HRA  D      L  ++M+  G     M D   +
Sbjct: 125 TGETRKNLS-CACSYFHV---PQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD--PK 178

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
           P +        Y+ K      +R   YL+ L  
Sbjct: 179 PLI--------YKAKRDQAATKRQKEYLQDLLK 203


>UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK
          Length = 942

 Score =  166 bits (420), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 33/234 (14%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        +++I +V V    I +  S  V P   I P    +  IT+  
Sbjct: 5   FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDRFSTFVDPGCSIPPFITELTGITDKD 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP-EMPGEWI--------CTMKLARR 105
           V   P   ++   +  +      VAHN  FD+  L  ++  E +         T++L+R 
Sbjct: 65  VEGAPVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVELSRV 124

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L P  +      YK  +L+          HRA  D  ITA L I +++            
Sbjct: 125 LLPTQES-----YKLSELSSSLDMDHDRPHRADSDAEITAELFIKLLHKLERLPLVTLQS 179

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPEL--RLTLKHY 216
             + +      +         DV  R     +W+  + D    +L  +L LK  
Sbjct: 180 LEQVAKGLKSDW---------DVLTRPLIQKKWMKVDEDEREYDLFRQLALKRV 224


>UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010
           RepID=C0N1K0_9GAMM
          Length = 488

 Score =  166 bits (420), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET G +     + EIA ++V DG +V     L+ P RPI P    +  IT+A VA
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVA 71

Query: 60  DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           D P  +++          +  VAHNA FD   L +        +  + +C++KL+R+L+P
Sbjct: 72  DAPTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131

Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
             +   +  + +   L +      + HRA+ D  +  A    I
Sbjct: 132 EHRSHGLDRIIERLGLTID-----NRHRAMADTEVLLAFFEHI 169


>UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales
           RepID=C0DA77_9CLOT
          Length = 255

 Score =  165 bits (419), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 28/213 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL+     I EIA++ V+DG +      LV P RP+  + + +  IT+ M+
Sbjct: 16  YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGML 75

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A  P I DV   +  + G    + HN  FD   L         +   E I T+ L R   
Sbjct: 76  AGAPAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFM 135

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
           PG    N++              +  HRA  D      L   ++   G          GR
Sbjct: 136 PGEHKKNLSAACAFY----CIEQVEAHRAEADALSAHLLYQKLLEGRGE---------GR 182

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
             L T  +   Y+ K    V +R   YL+ L  
Sbjct: 183 EELFTPKSL-IYKAKKEQPVTKRQKEYLQDLIK 214


>UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38
           Tax=Enterococcus RepID=C2JLR4_ENTFA
          Length = 929

 Score =  165 bits (419), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 25/214 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       I++   V V DGKI+   +  V P++ +  Q  ++  I+   
Sbjct: 12  VYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQ 71

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V   P+ EDV   I HY     +VAHN  FD   L         P +    I T++LA+ 
Sbjct: 72  VQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160
             P  K   ++ L ++  L+ + P     H+A  D  +TA LL+ I          T E+
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHENP-----HQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           +A+++ + +  T+    +   +    V   +P Y
Sbjct: 187 IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220


>UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium
           amycolatum SK46 RepID=UPI000185C525
          Length = 529

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 91/237 (38%), Gaps = 27/237 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL+     I+EI ++    GK +   S  + P   I     ++  IT A V
Sbjct: 23  FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADV 82

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106
              P +  VI  +        +VAHNA FD   L +   +          + T+ LARR+
Sbjct: 83  ETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRV 142

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162
               +  +  L +  +      P    HRAL D   T  +L  +M         TA ++ 
Sbjct: 143 LDRSQVGSFKLSQLARY--VGSPNRPAHRALDDAIATVDVLHYLMERLAVYEVQTASELV 200

Query: 163 DITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             +  P++       ++    ++D A   PG   +   N D +     L L+  L  
Sbjct: 201 HYS--PTVAPEVRAKRH----LADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQ 251


>UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB
          Length = 688

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 21/169 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV+IA + +++G+I+       LV P RPI P +  +H I++
Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553

Query: 56  AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104
            MV D P I +       +      VAHNA FD   L               +CT+ ++ 
Sbjct: 554 DMVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSA 613

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            L+         AL +   + +   P    H A+ D   TA + + ++ 
Sbjct: 614 GLFDHSGQHTLDALCERFGITI---PPEARHTAMGDTVATAEVFVRMLG 659


>UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria
           RepID=Q0HVL5_SHESR
          Length = 239

 Score =  164 bits (417), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 87/210 (41%), Gaps = 26/210 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL        +EI +V +  G+I    S L+ P   I+        I+  M
Sbjct: 40  LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           +A      +V+     + G    VAHNA+FD+R L         + PG++ C++ LARRL
Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           +P      +A     K   Q P     HRAL D  +T  L + ++            IT 
Sbjct: 160 YPEAINHQLATLVRHK---QLPTDGTFHRALADAEMTGHLWLRMLADLKQG----YAITE 212

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
            P  +      K +    ++V +    Y R
Sbjct: 213 PPFSLMQKIMTKTK----AEVPKFLRQYAR 238


>UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium
           kroppenstedtii DSM 44385 RepID=C4LI21_CORK4
          Length = 616

 Score =  164 bits (417), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 76/212 (35%), Gaps = 27/212 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V +  G+ ++  S  V P R I P    I  I++  V
Sbjct: 34  FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDV 93

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
              P     +  +         VAHNA FD   L                +CT+ LAR +
Sbjct: 94  NGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTM 153

Query: 107 WPGIKYSNMALYK-TRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMADI 164
                  +  L    R  +  T P    HRAL D   T  +   ++   G      + DI
Sbjct: 154 LDRCAVGSFKLSSLARHFHATTTPT---HRALDDALATVTVFHGLLEELGSHDIIHVGDI 210

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
             RPS           G +V  V   D   + 
Sbjct: 211 PTRPSRGAA-------GASVFQVPTPDATSIS 235


>UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
           ATCC 29799 RepID=A6P0N2_9BACE
          Length = 1390

 Score =  164 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 94/233 (40%), Gaps = 36/233 (15%)

Query: 5   IDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL      I+EI +V + +G+I       V P RP+S + + +  IT+ M+   
Sbjct: 372 FDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKMLEGA 431

Query: 62  PWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWPGI 110
           P  E+ I     + G     AHNA FD   + E    +        I T+ LA+ L P +
Sbjct: 432 PSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLLPDL 491

Query: 111 -KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMADITG 166
            KY    + +  +L     P   HHRA  D  + A +      ++   G        I  
Sbjct: 492 GKYKLDIVAEHLRL-----PPFKHHRADADAGMVAYMLVPFFKMLEDLG--------IHT 538

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             S+    T  + +GK     A R P +L  L  N   +     L  K +LE+
Sbjct: 539 LQSINPEMTRLRVKGK-----ARRQPKHLIVLAKNNMGLRNLYTLISKAHLEH 586


>UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BCD0_PARDP
          Length = 706

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 21/167 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I ++ +++GK++       LV P R I P+++  H I  
Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575

Query: 56  AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV  +P I +V+P ++        V HN +FD R L               + T+ LA 
Sbjct: 576 EMVQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLAS 635

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
              P     ++     R L V+       H AL D  +TA + + ++
Sbjct: 636 IAQPHEPSHSLEAIAAR-LGVEI---TQRHNALSDALVTAEVFLRLL 678


>UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM
           20469 RepID=C8WA42_ATOPD
          Length = 342

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 26/236 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EIA++ V+DGKI    S L+ P R I   A AI+ IT  MV
Sbjct: 78  YVVVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMV 137

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHN-ASFDRRVLPEMPGE--------WICTMKLARRL 106
            + P ++ VIP    +      + HN   +D  VL E            W  T KLAR++
Sbjct: 138 KNAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQI 197

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                Y  + + K     +        HRAL DCY+T  +   +   S  T E +  I  
Sbjct: 198 L-EPPYKLINIAKR----LNVKQHGKAHRALADCYMTYGIYEKMREISIATTENVKCIEK 252

Query: 167 RPSLMTTFTFGKYRGK--AVSDVAERDP--GYLRWLFNNLDSMSPELRLTLKHYLE 218
                T  T  K  G    ++ V    P   +L+ L  N  ++S  + L   + ++
Sbjct: 253 YTDKNTEST--KLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLID 306


>UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5
           RepID=Q1Q8L3_PSYCK
          Length = 242

 Score =  164 bits (415), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 4   IIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           IIDTET  G     +++A+++V  G             R ISP  + +H IT+  VA   
Sbjct: 13  IIDTETDQGRDPRPIQVATINVATGF---EWMKYFNSGRSISPVVIRVHGITDDDVAGLE 69

Query: 63  WIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRK 122
             E  +  +   E+ + HN  FD RV+     + ICT++LAR  +P       +    + 
Sbjct: 70  RFE--LEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQL 127

Query: 123 L--NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSL---MTTFTFG 177
           L     +   +  H AL D  +   L               A      +    +    FG
Sbjct: 128 LGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKMPFG 187

Query: 178 KYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL 213
           K++G  + +V      Y++W+  N+ +M P L   L
Sbjct: 188 KHKGMPIKEVP---ISYVKWMLGNIHNMQPSLYSAL 220


>UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus
           RepID=Q1IXC1_DEIGD
          Length = 180

 Score =  164 bits (415), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 25/177 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPD------RPISPQAMAI 50
           + + D ET GL      IVEI ++ V+DG++V       LVRP        PI  +A  +
Sbjct: 3   VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62

Query: 51  HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98
           H I++AMV D P +  V+P +    G     AHN  FD   +                 C
Sbjct: 63  HGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEYC 122

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           T++L+RR +P  +  N+ +   ++L +   PG   HR+L D  +TA   + +M    
Sbjct: 123 TVQLSRRAFPRERTHNLDVL-AQRLGLSFAPG-GRHRSLGDVQVTAEAFVRLMERLS 177


>UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales
           RepID=A4BWD8_9FLAO
          Length = 462

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 20/168 (11%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       I EI+++     KIV+  + LV P++ I     ++  IT AM
Sbjct: 2   LYAVVDIETTGNGPKGQKITEISALIFDGKKIVDEFTSLVNPEQNIPAFITSLTGITNAM 61

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           V + P   ++   +     +  +VAHN +FD  ++         +   + +CT++L R++
Sbjct: 62  VRNAPRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIRLTRKI 121

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            PG+  YS   +     +     P    HRA  D   TA LL  ++  
Sbjct: 122 IPGLPSYSLGNICTGENI-----PINGRHRAKGDAEATAELLRRLIER 164


>UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae
           RepID=A5LFK6_STRPN
          Length = 307

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 25/209 (11%)

Query: 2   LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET    +G +  I  V   DG IV+    L+ P+       + IH IT   V D
Sbjct: 5   YVALDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLD 64

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108
            P   +V   I  + G +  VAH A FD   L ++           E+IC+ +LA+   P
Sbjct: 65  SPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALP 124

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT--- 165
           G        YK ++L       L HH AL D   +  +L  +++T+ ++   +       
Sbjct: 125 GQLN-----YKLKRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS--DLTAFLKEY 177

Query: 166 --GRPSLMTTFTFGKYRGKAVSDVAERDP 192
              +  L+  + F + +G    +     P
Sbjct: 178 RYNKTGLLGQYGFKRKKGYQYKENLIYQP 206


>UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J5B5_DESRM
          Length = 930

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL   Q  I+EI  V ++DGK ++  S L+RP   +  +   +  I +  +
Sbjct: 4   FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHEL 63

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-----PEMPGEWICTMKLARRLWPGI 110
            D P +++V+P    +      V HN  FD   L       +      T++L++ L PG 
Sbjct: 64  QDAPKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGA 123

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
               +  Y    L +  P   + HRAL D    A LLI ++N
Sbjct: 124 SNHRLG-YLCSYLGIDIP---NQHRALDDARGAAMLLIHLLN 161


>UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales
           RepID=C4PPS2_CHLTJ
          Length = 250

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 29/232 (12%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET GL      ++E A++     +I++ +  L+ P+R +S ++  IH+I++AM+ DK
Sbjct: 12  LDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAMLRDK 71

Query: 62  PWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLARRL 106
           P   +V       +   +  V H+  FD +VL +                I T++LA+  
Sbjct: 72  PKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLAKEY 131

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                 S  AL +   +     P   +HRA+ D  +   +   +      T  Q+  I  
Sbjct: 132 GDSPNNSLEALARHFNV-----PHQGNHRAMKDVEMNVKVFKHLTKRF-RTLSQVTHILS 185

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
           +P  M     GKY+G+  +D+      YL W          +L  +++  ++
Sbjct: 186 KPIKMKYMPLGKYKGRLFTDIP---LEYLLWALKM--DFDQDLLFSIRSEIK 232


>UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21
           RepID=C0WAB0_9FIRM
          Length = 225

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 24/167 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEA 56
             +ID ET GL      I+EI +V V +G +       + P+  + +SP    +  IT++
Sbjct: 57  YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116

Query: 57  MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            +   P   +++P    + G    V HN +FD   L           +   ++ T KLA+
Sbjct: 117 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 176

Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
            + PG+  YS  AL K   +        +HHRA+ DC +T  +L  +
Sbjct: 177 TVVPGLSHYSLEALCKHFGI------AGNHHRAVDDCELTEKVLDAL 217


>UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) n=1 Tax=Deinococcus deserti VCD115
           RepID=C1CX37_DEIDV
          Length = 202

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 26/189 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRP------ISPQAMAI 50
           + + D ET GL     GIVEI ++ V++G++        LVRP         I   A  +
Sbjct: 3   VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62

Query: 51  HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98
           H I+  MV   P IE+V+P +    G    VAHN  FD   +                 C
Sbjct: 63  HGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHC 122

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           T++L+RR +P  +  N+ +    +L +   PG   HR+  D  +TA   + ++     TA
Sbjct: 123 TVQLSRRAFPKERAHNLTVL-AERLGLNFAPG-GRHRSFGDVQVTAHAYVRLLELL-ATA 179

Query: 159 EQMADITGR 167
           E    ++G+
Sbjct: 180 EPQQRVSGK 188


>UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus
           RepID=DING_BACSU
          Length = 931

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        I++IA+V + +G+I    S  + P++ I      +  I+  M
Sbjct: 6   FVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNKSIPAFIEQLTGISNQM 65

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMP-GEWICTMKLARR 105
           V ++   E V           ++VAHN  FD   +         ++P  E + T++L+R 
Sbjct: 66  VENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRI 125

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++PG + Y    L +  +L    P     HRA  D  +T  + ++I+         T +Q
Sbjct: 126 VFPGFEGYKLTELSEELQLRHDQP-----HRADSDAEVTGLIFLEILEKLRQLPYPTLKQ 180

Query: 161 MADITGR 167
           +  ++  
Sbjct: 181 LRRLSQH 187


>UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14
           Tax=Actinomycetales RepID=D1BFZ9_SANKS
          Length = 616

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G      GI EI +V V  G+++     LV P  P+      +  IT  MV
Sbjct: 62  FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGEFQSLVNPGHPVPAFIARLTGITTLMV 121

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMP---------GEWICTMKLARRL 106
           +  P IE V+P +         VAHNA FD   L              + + T+ LARR+
Sbjct: 122 SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPLARRV 181

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
               +  N  L     L          HRAL D   T  ++  + + 
Sbjct: 182 VTRDEAPNHKLGTLAAL--FRATITPDHRALSDARATVDVMHALFDR 226


>UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria
           RepID=A1BGS1_CHLPD
          Length = 219

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL        +EI +V V  G+IV+    L+ P   IS    +   IT  M
Sbjct: 9   VVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEM 68

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           ++ +P  E+V      +      VAHNASFDRR L            G   C++ ++RR+
Sbjct: 69  LSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           +       +    +       P     HRAL D  +TA L + +++ 
Sbjct: 129 YQDSPNHKLQTLVSH---AGIPEIGSFHRALADAEMTAHLWMSMIDR 172


>UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces
           sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO
          Length = 589

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 67/172 (38%), Gaps = 20/172 (11%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G + G   I EI +V V  G+ V   S LV P +PI     ++  IT AM 
Sbjct: 44  FVVVDLETTGAKPGPESITEIGAVKVRGGETVGEFSTLVNPGQPIPAFITSLTGITTAMT 103

Query: 59  ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEM---------PGEWICTMKLA 103
           A  P I  VIP          S    AHNA FD   L                + T+ LA
Sbjct: 104 ARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVALA 163

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           RR +   +  N  L               +HRAL D   T  +L  ++   G
Sbjct: 164 RRAFSSDEVPNFKLSTLA--GACGATTAPNHRALDDARATVDVLHAMLGRLG 213


>UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae
           RepID=C9M9P8_9BACT
          Length = 208

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL      I+E+ ++  + GK     S L+ P  PI     +IH IT+ MV
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV----LPEMPGEW-----ICTMKLARRL 106
           A +P +E+VI     + G    V HNA FD       L ++  +W       T+ L+R  
Sbjct: 72  AGQPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVA 131

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164
           +PG++ YS  +L    +          HHRAL DC+ T  L    +         ++AD+
Sbjct: 132 FPGLRSYSLESLSDFFEFKEGV-----HHRALCDCWYTQQLFTRFLEKVDQLRCLELADL 186

Query: 165 TGR 167
              
Sbjct: 187 AHE 189


>UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4KA24_THASP
          Length = 769

 Score =  162 bits (411), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I+++ +  +++GK++       LV P+RP++P++  IH IT 
Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            M+  +P I+ V+P ++        +AHNA+FD R L               I T+ L+ 
Sbjct: 639 EMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSA 698

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            + P  +   + A+ +   L +     +  H AL D  +TA + + ++        +   
Sbjct: 699 VVHPNQESHRLEAIAERLGLTI-----VGRHTALGDAIVTAEVFLKLIPLLAEKGIRTLR 753

Query: 164 ITGRPSLMTTFTFGKY 179
                +  T +   KY
Sbjct: 754 DAREAAEKTYYARVKY 769


>UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876
           RepID=UPI0001BC319F
          Length = 234

 Score =  162 bits (411), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 34/221 (15%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL      I+E+ +V   DGK V+  + L+ P   I  +   I  I + MV
Sbjct: 5   FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMV 64

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           +  P+I+D +     + G++  + HN  FD   +         E   E I T+K A+++ 
Sbjct: 65  SKAPYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVL 124

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
           P  +  N+  +     ++ T     HHRA  D    A +              + +++G 
Sbjct: 125 PANESKNLE-HLCEMFDIVTI----HHRAYEDAMSAANVYFR-----------LCELSGE 168

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
            +++  + F K +   ++    +   YL+ L     ++ P+
Sbjct: 169 ETIVEQYHFKKQKAAGIT---PKQVNYLKSLIER-HNIKPD 205


>UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Dethiosulfovibrio peptidovorans DSM 11002
           RepID=C1TRP3_9BACT
          Length = 193

 Score =  162 bits (410), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL      IVEI ++    G         V P RPI  +A+AIH IT+ MV
Sbjct: 10  FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMV 69

Query: 59  ADKPWIED---VIPHYYGS-EWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARR 105
              P + +    +  +    E  V HN SFD   L      + G W       T  LAR+
Sbjct: 70  EGAPGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARK 129

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMAD 163
            +PGIK YS +AL +   L+     G  HHRAL DC  +A+L   I+    G+    + D
Sbjct: 130 AFPGIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKD 184

Query: 164 I 164
           +
Sbjct: 185 L 185


>UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae
           RepID=Q2GJZ1_ANAPZ
          Length = 244

 Score =  162 bits (410), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL       I+EI  V+++D  +        + P+R IS  A  +H IT   
Sbjct: 6   IVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRES 65

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLAR 104
           +   P   +V   +  +      V HNA FD R L            +    + T+++AR
Sbjct: 66  LIGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMAR 125

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           + +PG+  S  AL K   ++ Q       H AL D  + A + ++++  
Sbjct: 126 KKFPGMPASLDALCKRFNISTQ---ERKFHGALKDATLLARVYVELLEA 171


>UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae
           group RepID=Q4ZNE2_PSEU2
          Length = 204

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + +ID ET G+         EIA V +  G+IV     L+     I      +  I+  M
Sbjct: 5   IAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNM 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           +   P  E V   +  + GS   VAHNASFD++                + C++ LARRL
Sbjct: 65  IRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRL 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159
            PG     +          + P     HRA+ D  + A L   + N    T        +
Sbjct: 125 MPGAPNHKLGTLTRY---ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISHQ 181

Query: 160 QMADITGRPSLMTTFTFGKYRG 181
            +  +   P+   + T  + RG
Sbjct: 182 MLCSLQKVPAAKISETLKRQRG 203


>UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum
           DSM 20098 RepID=C4FGI7_9BIFI
          Length = 186

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G+      I+EI +V V  G +    S LV P RP+      +  I++ MV
Sbjct: 19  YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMV 78

Query: 59  ADKPWIEDVIPHYYG----SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
            +   IE V+P +      S+  VAHNA+FD   L              ++I T++L+R 
Sbjct: 79  GNASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRA 138

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           L+P  +   +  L +   +  +       HR L D   T      +
Sbjct: 139 LFPQERQHRLVDLIQRFGIADEEE-----HRGLSDALQTVECYERM 179


>UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia
           RepID=C6V4W1_NEORI
          Length = 228

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            I+DTET GL       ++EI  V+++D +I        + P+R IS +A  +H IT   
Sbjct: 7   VILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103
           +AD P   D+      + GS   VAHNASFD R L                  I T+ +A
Sbjct: 67  LADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMA 126

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           R+++PG   S  AL +  +++++       H AL D  + A + I++   S  +   M+ 
Sbjct: 127 RKIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIEL---SKGSQVSMSF 180

Query: 164 ITGRPSLMTTFTFGKYRGKAVSD 186
           + G  +      F +     ++ 
Sbjct: 181 LEGSSASSEKKMFKEREKLIITP 203


>UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae
           RepID=DPO3E_AQUAE
          Length = 202

 Score =  161 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID E  G       ++++A+V V  G I    S LV P   I  +   +  IT AM+
Sbjct: 19  FVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAML 78

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
             +P IE+V+P +    G    V H    D + + +   ++         +CT+KLAR++
Sbjct: 79  VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKV 138

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           +PG+ KYS   + +              HRAL D  +TA + I I+  
Sbjct: 139 FPGLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILEE 181


>UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4
          Length = 922

 Score =  161 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 26/187 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G+       I++IA V +   KI++  +  V P R I P   ++  I +  
Sbjct: 4   FVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDRFNSYVNPMRDIPPFIRSLTNINDNE 63

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           V D P  + V P         ++VAHN  FD   + E         + G  I T++L++ 
Sbjct: 64  VKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGYTGLSGPVIDTVELSKI 123

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQ 160
            +P      ++ L ++  +N   P     HRA  D   TA + ++IM+        T  +
Sbjct: 124 AYPTADGFRLSQLSESLHMNHDQP-----HRADSDAEATALIFLEIMDKLYHLPKQTLIE 178

Query: 161 MADITGR 167
           + +++ +
Sbjct: 179 LNNLSTK 185


>UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3
           Tax=Betaproteobacteria RepID=A1K872_AZOSB
          Length = 734

 Score =  161 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I +V V++GK +       L+ P RP+  ++  +H IT 
Sbjct: 544 YTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITA 603

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            M+A +P IE V+P ++        VAHNA+FD R L               + T+ L+ 
Sbjct: 604 DMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSA 663

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            + P      +      +L +     +  H AL D  +TA + + ++
Sbjct: 664 VIHPNQDSHRLE-AIAERLGITV---VGRHTALGDAMVTAEVFLKLV 706


>UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium
           johnsoniae UW101 RepID=A5FIG6_FLAJ1
          Length = 459

 Score =  161 bits (408), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGK-IVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G       I EIA + + DGK +++    LV P++ I P    +  I   M
Sbjct: 6   YAIVDIETTGGNASGSRITEIAII-IHDGKNVLDRYETLVNPEQDIPPSIFGLTGINNEM 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106
           VA+ P  +D+   +        +VAHN +FD       L +   +W    +CT++ AR++
Sbjct: 65  VANAPIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKKLCTVRAARKI 124

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADI 164
            PG+  YS   L  +  ++++     + HRA  D   TA L   ++        E+M   
Sbjct: 125 KPGLGSYSLGNLCNSLNISLE-----NRHRAGGDADATAILFSLLLEWDDAGEIEKMIKK 179

Query: 165 TGRPSLMTT 173
           T +   +  
Sbjct: 180 TAQDQRLPP 188


>UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae
           RepID=C8NZK8_ERYRH
          Length = 1433

 Score =  161 bits (408), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 21/205 (10%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            D ET GL      I+E   V + +G++V  M   ++   P+ P    +  IT+A + + 
Sbjct: 388 FDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADLVNA 447

Query: 62  PWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109
           P IE+    I  + G    VAHNA FD   + E         +    I T+ L+R L+  
Sbjct: 448 PSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRALFDN 507

Query: 110 IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168
            + Y   ++ +  ++          HRA YD  + + + ++++         M  I    
Sbjct: 508 RRSYRLGSIARFMRIGYDEGV---AHRADYDAEVLSLVFLEMLRL--EQLSTMQTIDDLQ 562

Query: 169 SLMTTFTFGKYRGKAVSDVAERDPG 193
           SL    +F K R    + +A+    
Sbjct: 563 SLNNESSFKKLRKSHCTVIAKTQSS 587


>UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii
           PG-8A RepID=A9NEU3_ACHLI
          Length = 1504

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 41/189 (21%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET G       I+EIA+  V  G I      L+ P+  +S     I  IT+ M
Sbjct: 411 VYTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEM 470

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105
           V ++  IE+V+P    +      VAHNASFD            L   P   I T+ +AR 
Sbjct: 471 VENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARY 530

Query: 106 LW--------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITA 144
            +                    P +K  N+ AL K  K+N++      HHRA+YD Y TA
Sbjct: 531 FYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATA 585

Query: 145 ALLIDIMNT 153
            + ++++  
Sbjct: 586 EVFLNMLQD 594


>UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BAS5_PARDP
          Length = 659

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 18/194 (9%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58
            + DTET GL      IV+IA + +  G++       LV P RPI P + A+H IT+AMV
Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A  P +   +    H+      VAHNA FD   L             + + T+ L+  LW
Sbjct: 514 AGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW 573

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMADITG 166
                 ++    T +L +  PP    H A+ D   TA   + ++        ++  D+  
Sbjct: 574 GQSAPHSLD-ALTERLGIVIPPEA-RHTAMGDARATAEAYLRLIAALEAKGLDRFEDVLA 631

Query: 167 RPSLMTTFTFGKYR 180
                        +
Sbjct: 632 EARRHRRLVDDANK 645


>UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO
           RepID=UPI0001BCC2A4
          Length = 663

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 20/214 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A+V +  G ++      + P  P+S   + +  IT+ MV
Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMV 486

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
                 E+V+     +      VAHNA+FD   L         PE     I T++LAR L
Sbjct: 487 RGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYL 546

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           +P  K   + +  ++K  V       HHRA+YD   T  L    +  +      +     
Sbjct: 547 YPQFKRFGLGVL-SKKFGVSLE---QHHRAIYDAEATGHLAWIFVKEAMDNHNMLYHDQL 602

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
              +    ++ + R   V+ +A+   G L+ LF 
Sbjct: 603 NEHIGEGDSYKRARPFHVTILAKNQAG-LKDLFK 635


>UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria
           RepID=Q21J48_SACD2
          Length = 238

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 26/180 (14%)

Query: 3   RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL+      I+EI  V++I+ K+        ++P+R I   A+ +H IT   
Sbjct: 4   IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101
           +ADKP  +D+   +         V HNA FD   L                    + T+ 
Sbjct: 64  LADKPVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
           LAR   PG K +  AL K    +         H AL D  I A +   ++ T G T   +
Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSARDL---HGALLDAEILADVY--LLMTGGQTNLAL 178


>UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW
           RepID=B6ISI0_RHOCS
          Length = 699

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 23/169 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       +V +A V +++G+I+       L+ P R I   + AIH IT+
Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
           AMVA+ P  E V+P    + G    VAHNA+FD + L            G  + TM L+R
Sbjct: 566 AMVAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSR 625

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++     ++S   L     + +     +  H A+ D  +TAA+ + +M+
Sbjct: 626 QIQGDHGEHSLDGLAARLGIGL-----VDRHSAMGDSLMTAAIFLRLMD 669


>UniRef50_B5ES02 Exonuclease RNase T and DNA polymerase III n=2
           Tax=Acidithiobacillus ferrooxidans RepID=B5ES02_ACIF5
          Length = 220

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 16/221 (7%)

Query: 4   IIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLV---RPDRPISPQAMAIHRITEAMVA 59
           I DTET G ++  ++E A + V D + +      V   RP +PI   AMA+H I E  + 
Sbjct: 5   IFDTETTGRVEPELIEAAWLAVSDLRTLEVEEQFVQRYRPAKPIEMGAMAVHHILEEDLL 64

Query: 60  DKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY 118
           + P      +P   G  + V H+  +D  V+ +   + ICT  + R+LWP +   + +  
Sbjct: 65  ESPPASSFRLPEDTG--YLVGHSIDYDWGVIGKPDVKRICTYAMTRKLWPEVDSHSQS-A 121

Query: 119 KTRKLNVQTPPGL----HHHRALYDCYITAALLID-IMNTSGWTAEQMADITGRPSLMTT 173
                +           + H AL D      LL   I++    + E + + + R  +  T
Sbjct: 122 LMYHFSKDKRKTRDNLKNAHSALADVKFCRILLNKVILSVRPNSWEDLWEFSERARIPET 181

Query: 174 FTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
             FGK++G  ++D+ +    Y RW  NNL  M   LR  L+
Sbjct: 182 MPFGKHKGVKIADLPD---DYRRWALNNLTDMDTYLRKALE 219


>UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria
           RepID=Q21VB4_RHOFD
          Length = 476

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EIA+V + +G+ V   S LV P   ISP    +  I+ AMV
Sbjct: 5   YVLLDLETTGGNPVHDRITEIAAVRIENGQEVARWSTLVNPGCSISPFIQHLTGISNAMV 64

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
              P  E V   +         VAHN  FD   L          +  + +CT++L+R L+
Sbjct: 65  RGAPGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVALRVKTLCTVRLSRLLY 124

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
           P  K   +     R         L  HRA+ D  +  A L 
Sbjct: 125 PQHKGHGLDAIMQRH----GIRTLERHRAMGDVEVMQAWLQ 161


>UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria
           RepID=B1Y7R5_LEPCP
          Length = 731

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I +  +  GK+        LV P RPI P  + IH I  
Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600

Query: 56  AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MVA +P I+ V+P ++        VAHNA+FD R L               + T+ L+ 
Sbjct: 601 DMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSA 660

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            + P  +   + A+ +   + V     +  H AL D  +TA + + ++
Sbjct: 661 VVHPNQESHRLEAIAERFSITV-----VGRHTALGDAMVTAEVFVRLI 703


>UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales
           RepID=A1ARI3_PELPD
          Length = 170

 Score =  160 bits (406), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL     G ++E+A+V + +GK+V  +  L+R +  I P A  +H I   M
Sbjct: 5   LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           +   P  EDV   +    G    VAHNA FD   +          +    ICT+++ARR 
Sbjct: 65  LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           +P +    +       L    P     HRAL D  + A + + +
Sbjct: 125 FPELASHRLEALARHLLG-SIPEDCRLHRALGDARLAARVWLAM 167


>UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C36AB7
          Length = 264

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      I+EI+++ V + + V   S LV P RPI   A  ++ IT+ MV
Sbjct: 58  YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMV 117

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE---------MPGEWICTMKLARR 105
             +P +E ++P +      E  + HN  SFD   L           +  ++I T+ +AR 
Sbjct: 118 QSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARA 177

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L PG+    +  L    K++ +       HRA  DC +       +          +   
Sbjct: 178 LLPGLSRHRLTDLADYFKISSEG-----AHRAFNDCVMNQICYEHMGKLLKDADIPVCPR 232

Query: 165 TGRPSLMTTFTFGKYRG 181
            G         FG + G
Sbjct: 233 CGGELTKRNGKFGPFYG 249


>UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata
           HTCC2501 RepID=A4CLT9_9FLAO
          Length = 375

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 26/188 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G +    GI EIA       ++V+    L+ P+RPI P    +  I   MV
Sbjct: 3   YAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMV 62

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
              P    V   I         VAHNA FD R+L             + +CT+ L++RL 
Sbjct: 63  QTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLI 122

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWT-------AE 159
           P  +  ++     R L +   P  + HRA  D   T  LL  +++  +G T       AE
Sbjct: 123 PDAESHSLGKL-VRSLGI---PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRAE 178

Query: 160 QMADITGR 167
            + +++ R
Sbjct: 179 TLGELSNR 186


>UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria
           RepID=Q1QW65_CHRSD
          Length = 253

 Score =  160 bits (405), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 31/193 (16%)

Query: 3   RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G+       ++EI +V+V++ ++        + P+R I P+A+ +H IT   
Sbjct: 4   IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG------------------EW 96
           VAD+P   D+      Y      V HNA+FD   +    G                    
Sbjct: 64  VADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123

Query: 97  ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           + T+ +AR+L PG + +  AL K   ++         H AL D  I + + + +  T G 
Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVL---HGALLDAEILSDVYLTM--TGGQ 178

Query: 157 TAEQMADITGRPS 169
           TA  +A I  R  
Sbjct: 179 TALSLAGIEERAG 191


>UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN
          Length = 910

 Score =  160 bits (405), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 23/175 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      ++++A+  +  G ++      + P  P+S     +  IT+  V
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV 484

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
            +   +E V+     +      VAHNA+FD            LP++    I T++ AR L
Sbjct: 485 KNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNL 544

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI----DIMNTSGWT 157
           +P  K   +    T++  V      HHH A YD   T  LL     ++    G T
Sbjct: 545 YPEYKRHGLGPL-TKRFGVALE---HHHMANYDAEATGRLLFIFIKEVAEKHGVT 595


>UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3
           Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB
          Length = 1411

 Score =  160 bits (405), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 22/214 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+EI +V + +G++++     + P  P+S   + +  IT+ MV
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMV 451

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
                   VI     +YG++    HN  FD   +         PE+    + T++++R L
Sbjct: 452 QAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLL 511

Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            P        +L +   + ++     HHHRA  D   T  L+  +++       +  D+ 
Sbjct: 512 HPEQSRHTLDSLCRKYNVALE-----HHHRANQDAEATGYLMFKLLDAFNDKYHE-DDLG 565

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199
                     + + R   ++ +A+     LR L+
Sbjct: 566 KMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLY 599


>UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c
           RepID=D1VLC1_9ACTO
          Length = 615

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I E  +V V  G++V   + LVR    I P    +  IT+AM+
Sbjct: 52  FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAML 111

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
           A  P + +V+P    +      VAHNA FD   L                + T +LARR+
Sbjct: 112 ATAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRI 171

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADIT 165
               +  N  L    +L          HRAL D   T  +L  +    G      + D+ 
Sbjct: 172 VTRDESPNNKLSSLARL--FRARTEPCHRALADARATVDVLHGLFERLGNLGVTTLEDVH 229

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193
              + ++     + R + ++D     PG
Sbjct: 230 AYSARVSPA---QRRKRVLADDLPTGPG 254


>UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE
          Length = 469

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L +ID ET G   +   + EIA + +  G+IV     LV P+RPI      +  IT+ MV
Sbjct: 7   LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A  P   ++   +  +     +VAHNA FD   +         +     +CT+KL+R L+
Sbjct: 67  AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   ++   AL +              HRA+ D  +       ++ +  ++A+ +A    
Sbjct: 127 PEHHRHGLDALIERHGFTCGA-----RHRAMGDTDVLWQ-FARLV-SGSFSADVLALACA 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           R   +     G   G A+  V +    Y
Sbjct: 180 RAMKLPARPPGLPEG-ALEGVPDAPGVY 206


>UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes
           RepID=A0LZ46_GRAFK
          Length = 457

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G +    GI EIA       K+V+    LV P++PI P  + +  I   M
Sbjct: 1   MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           + + P   +V   I         VAHNA FD R+L         E   + +CT++L+++L
Sbjct: 61  LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            PG+  YS   L ++  +     P    HRA  D   T  L   ++
Sbjct: 121 IPGLPSYSLGKLVRSLGI-----PLSDRHRAAGDAQATIKLFKMLL 161


>UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes
           RepID=D1YAF0_PROAC
          Length = 633

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 20/184 (10%)

Query: 2   LRIIDTETCGLQGG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             ++D ET G   G  I EI +V V  G++      LV P   I      +  IT+ MV 
Sbjct: 68  FCVVDLETTGTSEGSQITEIGAVKVCGGRVEGEFQTLVCPTGSIPASVQVLTGITDVMVR 127

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW 107
             P +  V+P    +  S   VAHNA FD   L     +          + T+ LAR + 
Sbjct: 128 SAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPWDDPAVVDTLALARSVL 187

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMAD 163
              +  N  L    +L          HRAL D   T  +L  +++  G     T E + +
Sbjct: 188 ARGEVRNYKLSTLSRL--FHTTTTPSHRALADARATVDVLHGLIDRVGNLGVTTLEDLLE 245

Query: 164 ITGR 167
           +T R
Sbjct: 246 MTHR 249


>UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA
          Length = 412

 Score =  159 bits (404), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV IA V +++G+I+     + +V P RPI  +++  H IT+
Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITD 278

Query: 56  AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV DKP    V+P +         VAHNA+FD + L               + TM L+ 
Sbjct: 279 DMVVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338

Query: 105 RL-WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            L  P   +S   +     + +        H AL D  +TAA+L+  +        Q  D
Sbjct: 339 FLDGPDAGHSLDDICDRYGIEIT-----DRHTALGDAMVTAAVLLRQIEALEGRGIQTLD 393


>UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3
           Tax=Lactobacillus RepID=C2ES78_9LACO
          Length = 960

 Score =  159 bits (404), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 27/219 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I+++  V V DG+I+N     + P   +      +  I   
Sbjct: 24  IYSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIINHFETKINPRVAVPRHITQLTGIKNN 83

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            V + P  ED+   +        +VAHN +FD   L         P +  + I T+ L++
Sbjct: 84  DVRNAPLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLSQ 143

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTS----GWTAE 159
            L P +K      Y+ R L         H H A+ D   TA LL+D+M         T E
Sbjct: 144 ILMPTVKS-----YRLRDLTSSLSIEHDHPHSAVSDAEATAHLLVDLMKQLRELPTLTLE 198

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS-DVAERDPGYLRW 197
           ++ ++       TT    +   + V+  +   D  Y+  
Sbjct: 199 KLVELKLNLPQQTTMVLEQELERRVANPLPLDDSLYVSH 237


>UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria
           RepID=Q0C6A4_HYPNA
          Length = 232

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 5   IDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAMVA 59
            DTET GL       I+EI +V++I+          L+ P   +S   + I  IT+  + 
Sbjct: 10  FDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITGITDDHLR 69

Query: 60  DKPWIE-----DVIPHYYGSEWYVAHNASFDRRVLPE----------MPGEWICTMKLAR 104
           DKP  E     D    + G    VAHNASFDR  L                W+ T+++AR
Sbjct: 70  DKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQMAR 129

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           + +PG   S  AL K   +++++      H AL D  + A++ ++++ 
Sbjct: 130 KRYPGAPASLDALCKRFDISLESRT---FHGALLDSQLLASVYLELLG 174


>UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SK59_9BACT
          Length = 228

 Score =  159 bits (403), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  +IDTET GL      I+ +A+V V + KI++  +  + P+  I  +++  H IT+ M
Sbjct: 44  VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           VADKP   +V+P +         V H+ +FD +++          ++   W+ TM +   
Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSH 163

Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
                  +YS   L     L++        H AL D   TA +   ++  +    + + +
Sbjct: 164 AIIKKDERYSLDYL-----LDLYNVTCNGRHTALGDALATAEVFTKMIMQASREFKTVRE 218

Query: 164 ITG 166
           +  
Sbjct: 219 LCD 221


>UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae
           RepID=C5CGL7_KOSOT
          Length = 1430

 Score =  159 bits (402), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET GL      I+EI +V +   +++   S  V+P+R +S +   I  I++  
Sbjct: 418 IYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPERNLSEKVTRITGISDRE 477

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           + D P + +V+P    +      VAHNA+FD R +          +    +I T+ L++ 
Sbjct: 478 LEDAPSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLALSKS 537

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           L     YS   + K  KL         HHRA  D  ITA +   +++ +      +  I 
Sbjct: 538 LLKSKSYSLDNVVKRLKLG-----DFEHHRASEDARITAEVFKKLLSMAKKRG--IKKIA 590

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193
              +L         R   V+ +A+   G
Sbjct: 591 ELENLRKHINISSLRPLHVTILAKNKTG 618


>UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales
           RepID=A8LQ52_DINSH
          Length = 485

 Score =  159 bits (402), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55
             I DTET GL       + +IA+  V++GK+V       LV P RPI   A  IH IT+
Sbjct: 291 YVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITD 350

Query: 56  AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104
           AMVAD P        ++G       +AHNA FD                   + T+ L+ 
Sbjct: 351 AMVADAPDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTVLLSA 410

Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMA 162
            ++   + +S  AL +   + +   P    H AL D   T  + + ++        E   
Sbjct: 411 VIYGQTEQHSLDALAERLNVTI---PEEARHTALGDALATTEVFLKLLPMLQAKGIETFG 467

Query: 163 DITGRPSLMTTF 174
           D+  +       
Sbjct: 468 DLLAQTKKHARL 479


>UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis
           subsp. lactis RepID=C6A933_BIFLB
          Length = 188

 Score =  159 bits (402), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 22/160 (13%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           +D ET G       I EI +V V DGKIV+  + LV P R +S +   +  I+  M+ D+
Sbjct: 14  LDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEMLEDQ 73

Query: 62  PWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLARRLW 107
           P IED++  +     ++  V HN  FD   L                  I TM + R L+
Sbjct: 74  PVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDRLLF 133

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           P  ++  + L +   +       +  HRAL D   T   L
Sbjct: 134 PSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCL 168


>UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2FTR2_9SPHI
          Length = 469

 Score =  158 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 23/217 (10%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  I+D ET G      GI EIA       ++++    L+ P + I      +  IT  M
Sbjct: 12  IYAIVDIETTGGYAANSGITEIAIYLHDGHQVIDSYQTLINPHKEIPYHIQMLTGITPEM 71

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           + D P  EDV      +  ++ +VAHN +FD   +         +     +CT++LAR +
Sbjct: 72  LTDAPSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCTVRLARNI 131

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMADIT 165
           + G    ++     ++L++   P    HRA  D   T  L   I+   +    +      
Sbjct: 132 FKGFSSYSLGNL-CQRLDI---PISDRHRAAGDAKATVILFERILSQDTDGLIDSFLQTH 187

Query: 166 GR----PSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
            +    P+ +    F +   K    + + + G + ++
Sbjct: 188 AKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224


>UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Slackia heliotrinireducens DSM 20476
           RepID=C7N494_SLAHD
          Length = 986

 Score =  158 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L ++DTET GL      + +IA+  +  G+I +     V P +PI  + + +  I +  V
Sbjct: 6   LVVLDTETTGLSYNHDELTQIAAARMECGEITDWFVTFVNPGKPIPDEIVRLTNIHDEDV 65

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108
            D P  ++    +  + G  + VAHNA FD+    +           W+ ++ LAR   P
Sbjct: 66  VDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECLNRNIWVDSLALARIALP 125

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            +K   +       L       +  HRA  D     A+   +++        + +
Sbjct: 126 RMKSHRLID-----LVHAFDAPISTHRADADVEALCAVYRILLSAVATMPPDLVE 175


>UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16
           Tax=Bacteria RepID=C4Z5K4_EUBE2
          Length = 1513

 Score =  158 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V +G+IV+  S  V P+ PI  +   +  I + MV
Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMV 532

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            + P IE+++P +         VAHNA FD   +          +    I T+ LA+ L 
Sbjct: 533 MNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLM 592

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHR 135
           P +    +    T+ LNV       HHR
Sbjct: 593 PNLHNYKLDTL-TKHLNVVLES---HHR 616


>UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus
           coagulans 36D1 RepID=C1PF24_BACCO
          Length = 930

 Score =  158 bits (400), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 26/185 (14%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I++ ++V V   +I    +  V P++P+ P    +  I   M
Sbjct: 4   YVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVPPFISELTGIDNGM 63

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           + + P   ++ P          +VAHN  FD   L         P   G  + T++ +R 
Sbjct: 64  LEEAPVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTVEFSRI 123

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160
            +P +  Y    L  +  L  + P     HRA  D ++TA LL+  M         T EQ
Sbjct: 124 AFPTLNSYKLGDLADSLSLYHERP-----HRADSDAFVTAKLLLACMEKCASLPVVTLEQ 178

Query: 161 MADIT 165
           +  ++
Sbjct: 179 LVPLS 183


>UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L7K7_STAHJ
          Length = 219

 Score =  158 bits (400), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 2   LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET  G +  I  +  V V++ +IV     LV P    S   + +H IT   V D
Sbjct: 41  FIALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVID 100

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108
            P  E V P    +      VAHNA+FD  VL +   +         + C+ +LA+R   
Sbjct: 101 APSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTID 160

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             +Y    L K  KL+        HH AL D    A +   ++       + M  I G+
Sbjct: 161 AYRYGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHYD-NLQSMLQIYGK 213


>UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus
           RepID=Q6MGT7_BDEBA
          Length = 217

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET G       IVEI +V  IDG+     + L+ P RPI P A A++ I++ MV
Sbjct: 15  FIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMV 74

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
             KP I+ ++P    + G +  VAHNA FD + L             G  + ++ +AR++
Sbjct: 75  KGKPLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSLPIARKV 134

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE-----QM 161
           +PG+    +     + L +   P  + HRA  D      +   +M       +      +
Sbjct: 135 FPGLPNYKLGTL-VQHLKI---PTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190

Query: 162 ADITGRPSL 170
             +TG+P L
Sbjct: 191 IALTGKPEL 199


>UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6
           Tax=Rhodobacteraceae RepID=DPO3E_RHOCA
          Length = 704

 Score =  157 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV+IA+V +++G+ V       LV P RPI   + A+H ITE
Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITE 569

Query: 56  AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104
           AMVA  P I +V      +      VAHNA FD   L               + T+ L+ 
Sbjct: 570 AMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSA 629

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            ++   +  ++    T +L + T P    H AL D   TA   + ++  
Sbjct: 630 VVFGAAEGHSLD-ALTHRLGI-TIPEEARHTALGDTVATAEAFLRLLPA 676


>UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium
           BBFL7 RepID=Q26FQ2_9BACT
          Length = 466

 Score =  157 bits (398), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G +     + EI  V +    I++  S L+ P+  I      +  I  AM
Sbjct: 7   LYCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLIDPEVLIPDYITTLTGIDNAM 66

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           VA  P   DV      +     +VAHN +FD  VL         +   + +CT++L+R L
Sbjct: 67  VASAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLSREL 126

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            PG++ YS   L     +     P ++ HRA  D   T  L   ++     T +Q  DI 
Sbjct: 127 IPGMRSYSLGKLCDDIGI-----PLINRHRAEGDTDATVILFQKLI-----TIDQEGDIF 176

Query: 166 GR 167
            +
Sbjct: 177 NK 178


>UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae
           RepID=D2QE10_9SPHI
          Length = 180

 Score =  157 bits (398), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 1   MLRIIDTETCG-LQG--GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G ++G   + EIA       ++V+    L+ P  PI P    +  I++ M
Sbjct: 1   MYCIVDVETTGGVKGPTRLTEIAIFRHDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           V D P   DV            +VAHN  FD   +         +     +CT++ +R+L
Sbjct: 61  VQDAPTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCTVRTSRKL 120

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
            PG   YS   L ++ ++     P    HRA  D   T  L   ++     
Sbjct: 121 LPGYPSYSLGKLCRSLEI-----PLNGRHRAQGDAAATVLLFEMLLKNDAQ 166


>UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407
           RepID=C3CTS6_BACTU
          Length = 286

 Score =  157 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 22/166 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET        G I EI +V  IDGK+V+  S L+ P+  I      +  IT  M
Sbjct: 19  FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLINPEMKIPANITKLTGITNDM 78

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVL--------PEMPGEWICTMKLARR 105
           V  KP    V+P    +      VAHNA FD  R L             E + ++ + + 
Sbjct: 79  VQGKPVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSVAVFQH 138

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
             P   KY       T           + HRA  D   T   L+++
Sbjct: 139 FCPNKGKYKLDDFCTTFGY-----LNKNRHRAYEDAEATGYCLLEL 179


>UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella
           RepID=D1PV56_9BACT
          Length = 287

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 96/274 (35%), Gaps = 67/274 (24%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L I D ET GL      I++I+ + V         S  V P++PI P    +  IT+ MV
Sbjct: 9   LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHN-ASFDRRVLPEMPGEWI----------CTMKLAR 104
            D P  + +   +   +    +   N   FD   +P +  E++          C +  A+
Sbjct: 69  KDAPTFKQIAKSLQETFAGCDFAGFNSNRFD---VPMLAEEFLRAGVDFDFQRCRLIDAQ 125

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----------- 153
            ++  ++  N+A         +       HRA  D   T  +L   ++            
Sbjct: 126 NIFHKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEK 185

Query: 154 ------------------------------SGWTAEQMADITGRPSLMTTFTFGKYRGKA 183
                                              + + D  G+P L   F F KY+G A
Sbjct: 186 TLANDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWA 245

Query: 184 VSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           V+DV  RDPG+  W+      +S +  L  K  L
Sbjct: 246 VADVVHRDPGFCNWI------LSSDFPLNTKQVL 273


>UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria
           RepID=A1K1I0_AZOSB
          Length = 231

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 18/167 (10%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G+         EIA V V +G +++    L+     +  +  A+  IT AM
Sbjct: 31  YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAM 90

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           V   P +  V+     + GS   VAHNA+FDR+               +++C++ L+RR+
Sbjct: 91  VRAAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRV 150

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           +P      +         +  P     HRAL D   TA L   I +T
Sbjct: 151 FPDSPNHKLGTLVR---TLGLPASGRFHRALADAEATAQLFARIAHT 194


>UniRef50_A6QAP0 Exonuclease n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAP0_SULNB
          Length = 263

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 23/240 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D E+ G+      ++++A + V   KI    + L   D  ++   +AIH IT AM+
Sbjct: 5   LYFVDVESTGVDLKNDRLIQLAFLKVQGDKI-EAFNDLCYTDIEMNDTVVAIHNITNAML 63

Query: 59  ADK--PWIEDVIPHYYGSE----WYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108
            DK  P+  D             +++AH    D  +L      +  + + T K AR L  
Sbjct: 64  EDKYWPYETDAFIELEKGNSPANYFIAHGNELDVAMLEHEELILEMQKVDTDKCARLLLK 123

Query: 109 GI-KYSNMALYKTRKLNVQTPP--------GLHHHRALYDCYITAALLIDIMNTSGWTAE 159
               Y    L    KL  +            L  H AL D      L  +++       +
Sbjct: 124 EAGSYKLEDLITRYKLTQKAEAIAKQIGLSNLDAHDALSDALWHYVLFEELLERVEGGID 183

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
            +  +T  P ++   TFGKY+GK+  +V ++ P  L W++ N+ +  P+L  TL+H+L+ 
Sbjct: 184 ALVSLTAEPMMLEKITFGKYKGKSFEEVFQKSPLDLVWMYANMAADWPDLDYTLEHWLKQ 243


>UniRef50_P0A1H0 DNA polymerase III subunit epsilon n=248 Tax=Proteobacteria
           RepID=DPO3E_SALTI
          Length = 243

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 40/237 (16%)

Query: 3   RIIDTETCGLQ--------GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53
            ++DTET G+           I+EI +V+VI+ ++        ++PDR + P+A  +H I
Sbjct: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGI 68

Query: 54  TEAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL--------PEMPG-----EWI 97
            +  + DKP   DV+  +         V HNASFD   +         ++P      +  
Sbjct: 69  ADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCKVT 128

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
            ++ LAR+++PG + S  AL    +++         H AL D  I A + + +  T G T
Sbjct: 129 DSLALARKMFPGKRNSLDALCSRYEIDNSKRTL---HGALLDAQILAEVYLAM--TGGQT 183

Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP-ELRLTL 213
           +   A               + +G+A      R    LR +F + + ++  E RL L
Sbjct: 184 SMTFAMEGETQ---------RQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDL 231


>UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp.
           128-5-R1-1 RepID=A8V2X6_9AQUI
          Length = 206

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 22/168 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57
             IID ET GL      ++E+A++    G I++ + HL +P    I  + + +  IT AM
Sbjct: 12  FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAM 71

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLARR 105
           V DKP+ ED+ P    +      VAHNA FD   L E+            +ICT  LARR
Sbjct: 72  VIDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARR 131

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++P I K S  +L     +N +       HRAL D   T      ++ 
Sbjct: 132 IFPEIQKKSLSSLTNYLGINFK-----QKHRALSDAQATLQAFQTMLE 174


>UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group
           RepID=B9Z6P2_9NEIS
          Length = 476

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 3   RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET G    +  I EI  + +IDG+ +     LV P +PI P    +  I++AMVA
Sbjct: 8   AIVDLETTGGHITRDRITEIG-ILLIDGERIERYETLVNPGQPIPPFIENMTGISDAMVA 66

Query: 60  DKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           + P      + +         +AHNA FD   L             E +CT+KL+RRL+P
Sbjct: 67  EAPPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRRLYP 126

Query: 109 G-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
              K+S  +L     + +        HRA+ D       +       G  A
Sbjct: 127 QHFKHSLDSLIARHGIVLA-----DRHRAMADALAVYHFIEAATAELGPEA 172


>UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67NP5_SYMTH
          Length = 958

 Score =  156 bits (396), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET G       ++E+A+V   DG+ +   S L+ P  P+  +   +  I  AM+
Sbjct: 6   FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAML 65

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           A KP IE+V+P    + G    VAHNA FD   L          +P     T +LAR   
Sbjct: 66  AGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVAL 125

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           P  +   +A        +   P  HHHRA  D     
Sbjct: 126 PLARNHRLATLA----ELLGLPLEHHHRAEDDARACG 158


>UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19
           Tax=Listeria RepID=B8DC27_LISMH
          Length = 928

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 22/160 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G Q      I++ A+  V  GK +   +  + P++PI      +  I+   
Sbjct: 6   YIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKD 65

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-PEMPG--------EWICTMKLARR 105
           V + P  EDV P          +VAHN SFD   L  EM          + + T++LAR 
Sbjct: 66  VKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARI 125

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITA 144
           ++PGI  Y    L     L    P     HRA  D  +TA
Sbjct: 126 MYPGIDSYKLQDLSDEFNLGHDKP-----HRADSDAEVTA 160


>UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18
           RepID=C6MPJ2_9DELT
          Length = 835

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GLQ      +V I++V +  GK+   +    LV P R I  ++ A HRI +
Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIED 700

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRV---------LPEMPGEWICTMKLA 103
            MVAD P + +V P +    G    VAHNA+FD++          LP +    + T+ L+
Sbjct: 701 HMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTLFLS 760

Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQM 161
             L  G + +S  A+ +   + ++       H +L D   TA + + +++   G     +
Sbjct: 761 VGLHSGTEGHSLDAMAQRMGIAIEG-----RHTSLGDARATAQIFLGLLSLLPGRGVRTL 815

Query: 162 AD 163
           A+
Sbjct: 816 AE 817


>UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2
           Tax=Exiguobacterium RepID=B1YHQ6_EXIS2
          Length = 937

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        ++EI    + DG+I   +S  VRP +PI P    +  IT+  
Sbjct: 5   FVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIPPFISQLTGITDED 64

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           VA       + P          +VAHN  FD   L E           G  I T++LAR 
Sbjct: 65  VAQAESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVELARI 124

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAA 145
           L P  +  +++ L +  +L          HRA  D   TA 
Sbjct: 125 LLPTAESHSLSHLTEALQLTHH-----EAHRAGSDAEATAE 160


>UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga
           gingivalis ATCC 33624 RepID=C2M5F0_CAPGI
          Length = 453

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 20/171 (11%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  IID ET G + G   I EIA       K+ +    L+ P++ I    + +  I+   
Sbjct: 1   MYAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISLINPEKKIDDFVVRLTGISNKT 60

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           V   P   +V   I         VAHNASFD RVL         +     +CT+++++RL
Sbjct: 61  VRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTLCTVEMSQRL 120

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
            P    YS   L ++  +     P L+ HRA  D   T  L   +++    
Sbjct: 121 LPDEPSYSLGKLTRSLGI-----PLLNRHRANGDAMATVHLFKLLLDRDTQ 166


>UniRef50_C0W1U9 Putative uncharacterized protein n=1 Tax=Actinomyces coleocanis DSM
           15436 RepID=C0W1U9_9ACTO
          Length = 206

 Score =  156 bits (395), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
           L  +D ET GL     I E+A+V    G++V   S LV P R I      +  I   +VA
Sbjct: 17  LVSVDIETTGLGDSDAITELAAVKYQKGQVVETFSSLVNPGRQIPVFITRLTGIDNQLVA 76

Query: 60  DKPWIEDVIPHYYG-----SEWYVAHNASFDRRVL----PEMPGEW-----ICTMKLARR 105
           D P + +V+P +           +AHNA FD R L     ++  EW     I T+  +R 
Sbjct: 77  DAPTLREVLPVFLEFCDFPRSVLLAHNARFDTRFLMNACAQLGLEWQFPASIDTVFFSRA 136

Query: 106 LWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           L P  +  N  L        ++ P   + HRAL D Y    L   +++
Sbjct: 137 LLPRPQVQNHRLGTLAHHFGIKNP---NAHRALADAYTCLELYKCLLD 181


>UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF
          Length = 1465

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 21/169 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      +++IA+  +  G IV      + P  P+S     +  IT+  +
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHL 486

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
                +  V+     +      VAHNASFD            LP++    I T++ AR L
Sbjct: 487 QGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +P  K   +  L K  ++++      HHH A YD   T  LL   +  +
Sbjct: 547 YPEYKRHGLGPLTKRFQVSLD-----HHHMANYDAEATGRLLFIFLKDA 590


>UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GHD8_9FIRM
          Length = 269

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 68/170 (40%), Gaps = 22/170 (12%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55
             I DTET G        I+ IA+V + +G+I        LV P R I      +  IT+
Sbjct: 78  YIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGITD 137

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLA 103
            MVADK  I  V+  +    G    VAHNA FD   L          E+    I T KL 
Sbjct: 138 DMVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLG 197

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           R L+P +   ++                  H AL D  +TA + +D +  
Sbjct: 198 RALYPQLLSHDLDTLIRHH----RVKERPRHTALGDSLMTAEIFLDYLKK 243


>UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM
           2243 RepID=C8WPW0_EGGLE
          Length = 966

 Score =  155 bits (393), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET G       + +IA+  +  G+IV      V P +PI      +  I +  V
Sbjct: 10  VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDRDV 69

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV-------LPEMPGEWICTMKLARRLWP 108
           AD P   D +     + G    VAHNA FDR          P +   WI ++ LAR   P
Sbjct: 70  ADAPLPADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 129

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            +K   +       L       L  HRA  D   T A+   ++
Sbjct: 130 RMKSHRL-----LDLVRAFGAPLSTHRADADVEATCAIFRILL 167


>UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus
           VCS1703A RepID=A5EY86_DICNV
          Length = 233

 Score =  155 bits (393), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 35/206 (16%)

Query: 3   RIIDTETCGLQ---------GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHR 52
            I DTET G+            I+EI  V++ID           + P++P+ PQA  +H 
Sbjct: 6   VIFDTETTGMNFESDNKAEGHRIIEIGCVELIDRVPTEHYFHCYLNPEQPVDPQAFKVHG 65

Query: 53  ITEAMVADKPWIEDVIPHYYG----SEWYVAHNASFDRRVLPEM------------PGEW 96
           I++  +ADKP+ +DV+P +      ++  VAHN +FDR+ +                   
Sbjct: 66  ISDEFLADKPFFKDVLPEFEAYLASADELVAHNIAFDRQFIDRELQLAGCDYRLGDKFTL 125

Query: 97  ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           + ++K+AR  + G + +  AL K   ++     G   H AL D  + A + + +  T G 
Sbjct: 126 VDSLKIAREKFAGARNNLDALCKRFGVD---NTGRELHGALLDAQLLAEVYLKL--TGGQ 180

Query: 157 T----AEQMADITGRPSLMTTFTFGK 178
           +    A  M     R    T  TF K
Sbjct: 181 SDLSFAHPMMASARRAEQKTAATFAK 206


>UniRef50_B2I3R4 DNA polymerase III, epsilon subunit n=3 Tax=Acinetobacter
           RepID=B2I3R4_ACIBC
          Length = 226

 Score =  155 bits (393), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 21/228 (9%)

Query: 3   RIIDTETCGLQGGIVEIASVD--VIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEA 56
            I+DTET  L G  +EIA     + +G+++       +       PI  +AMA+H I E 
Sbjct: 4   IILDTETNKLNGYPIEIAYAPFSLENGQLLVHKDEVFNRFYSCPEPIDLEAMAVHNIIET 63

Query: 57  MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVL----PEMPGEWICTMKLARRLWPGIK 111
            +  +P  E   +P   G E+ V HN  +D + L    P +  + ICT+ LAR +WP + 
Sbjct: 64  DIEGQPSCESFRLPE--GVEFIVGHNIDYDIKALNKCGPAIKVKTICTLALARDVWPDLT 121

Query: 112 YSNMALYKTRKLNVQTPPG---LHHHRALYDCYITAALLIDIMNTSG-WTAEQMADITGR 167
              +A+     ++ +        H H A  D Y T  +LI ++   G      +  ++  
Sbjct: 122 SHKLAVLYYFVMSNREEARKHLRHAHSARADVYFTGIILIALIERLGIKDLNSLYLMSEA 181

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKH 215
             L    T+GK++G  + ++      Y+ WL N  D + P LR  L++
Sbjct: 182 VRLPKIMTWGKHKGTPLKELPRP---YISWLLNKED-LDPHLRKALQN 225


>UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CAB9_9FIRM
          Length = 525

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 27/198 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+E+ ++   +G  V   S LV P+  IS +A  I+ IT  MV
Sbjct: 52  YVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMV 111

Query: 59  ADKPWIEDV---IPHYYGSE-----WYVAHNASFDRRVLPEMPGE--------WICTMKL 102
              P  + V   +  + G          AHNA FD   L +             + T+ L
Sbjct: 112 KKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSL 171

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTA 158
           +R++ PG+          +  N++       HRA+ D  +   +L  ++    +      
Sbjct: 172 SRKIIPGLSNYKQTTV-AKHFNIKNK---QEHRAISDAEVCGEILWKLLSIKKDEEVKKL 227

Query: 159 EQMADITGRPSLMTTFTF 176
           E +      P  M    F
Sbjct: 228 EILVKSKPSPEEMEVCAF 245


>UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein
           n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB
          Length = 484

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56
             + DTET GL   +  IV+I +V V++G+++    ++ LV P RPI   +  +H ++ A
Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336

Query: 57  MVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARR 105
           MV   P I +    ++        VAHNA FD   L               + T+ L+  
Sbjct: 337 MVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAV 396

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           L+ G    +       +L++  PP L  H AL D   TA  L+ ++
Sbjct: 397 LF-GASVPHTLDALCERLDITIPPAL-RHTALGDAQATACALVQMI 440


>UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom
           phytoplasma RepID=Q83YZ1_PEWBP
          Length = 1492

 Score =  155 bits (392), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 24/173 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP--ISPQAMAIHRITEA 56
             ++D ET G       I+ IA+V + +GKI+     L+ P +   IS     +  I++ 
Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464

Query: 57  MVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEM---------PGEWICTMK 101
           ++ +KP I++++  +        +   VAHNASFD   L E              I T+ 
Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLT 524

Query: 102 LARRLWPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           LA++ +   +KY S   + K+ K+ + +     +H AL+D   TA + ++++ 
Sbjct: 525 LAQKYFNKILKYFSLEKIVKSFKIKLDSE--GQYHNALFDARATALIFLEMLE 575


>UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD
          Length = 1043

 Score =  155 bits (392), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + +IDTET G+      + +IA+  +++GKIV+     V P RPI  +   +  I E+ V
Sbjct: 37  IVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDV 96

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108
           AD P  E+    +  + G    VAHNA+FD+    +           WI ++ LAR   P
Sbjct: 97  ADAPSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALP 156

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            +K   +       L       L  HRA  D     A+   ++      ++ + D
Sbjct: 157 RLKSHRL-----LDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLID 206


>UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia
           RepID=A9AEP6_BURM1
          Length = 398

 Score =  155 bits (392), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G    +  I EI  V++     V+  + LV P +PI P    +  I++AMV
Sbjct: 38  LVFVDLETTGGTPAEHRITEIGVVEI-GPLGVSTWTTLVNPGQPIPPFIQQLTGISDAMV 96

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P   ++ P        + +VAHNASFDR  L             + +CT++L+R L+
Sbjct: 97  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALF 156

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           P      +     R            HRAL D  +       +
Sbjct: 157 PRESRHGLDALIARH----GLVPAARHRALADADLLWQFWRHL 195


>UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria
           RepID=Q1GL30_SILST
          Length = 479

 Score =  154 bits (391), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56
             + DTET GL      IVE+A+  V++G+I++       V P RPI   +  IH + +A
Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332

Query: 57  MVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105
            VA  P IE VIP ++    S   VAHNA FD  +L +             + T+ L+  
Sbjct: 333 DVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSAL 392

Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMAD 163
           ++     +S  AL     + +   P  H H A  D   TA  LI ++    G   E    
Sbjct: 393 VFGISADHSLDALCSRLSIEI---PARHRHTAKGDARATAEALIRLLPLLQGKGIETFGQ 449

Query: 164 ITGRPSLMTTFTFGK 178
           +     L  T  FG+
Sbjct: 450 L-----LKETSKFGR 459


>UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum
           RepID=B3DQ35_BIFLD
          Length = 235

 Score =  154 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 69/168 (41%), Gaps = 26/168 (15%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G       I EI +V V +G IV+    LV P RPI  Q   +  IT+AMV
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 59  ADKPWIEDVIPHYY----------GSEWYVAHNASFDRRVLPEMPGEW---------ICT 99
           AD   I++V+P +             E  V HN SFD R L                  T
Sbjct: 94  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDT 153

Query: 100 MKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           M+++R L+P  ++  +A    R   +        HRAL D   T    
Sbjct: 154 MQISRALFPAQRHHRLADLIVR-FGIADNEE---HRALSDAIQTQQCF 197


>UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia
           complex RepID=A0K8A7_BURCH
          Length = 212

 Score =  154 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 18/171 (10%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL         EIA + + +G++V+    L+   R I    +A+  IT  M
Sbjct: 11  VAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDM 70

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG--------EWICTMKLARRL 106
           +A  P   +V+     + G    VAHNA FD+R      G         + CTM +ARR+
Sbjct: 71  IATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRI 130

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           +P  +   ++        ++ P     HRA+ D  +   L   +      T
Sbjct: 131 YPDARSHRLSSLAEM---LRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178


>UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855
           RepID=Q2S2L6_SALRD
          Length = 538

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 18  EIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YYGS 74
           EI +V V DG +V+    LV P + +  +   +  IT  MV + P  ++V+P    + G 
Sbjct: 2   EIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLGD 61

Query: 75  EWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPGIKYSNMA-LYKTRKLN 124
              VAHN SFD   L           +P E +CT++LARRL PG+    ++ L +   ++
Sbjct: 62  GILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDID 121

Query: 125 VQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
           V+       HRAL D   T+ +L   ++   +  E
Sbjct: 122 VEG-----RHRALGDAEATSVVLRRFVSQLAFEHE 151


>UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23
           RepID=B7A7U0_THEAQ
          Length = 627

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
           +    D ET GL      I+ + +V ++  +++       LV P RPI   +  +H +T 
Sbjct: 442 LYTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTW 501

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---PGEWICTMKLARRLWPG 109
            M+ DKP +E+V+P    +      VAHN +FD   L ++       + T+ LA  L+P 
Sbjct: 502 EMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQPPLVDTLLLAHLLFPD 561

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +K   +      +  V   P L  H AL D  +TA +   ++
Sbjct: 562 LKDHRLERL-AERFGV---PVLGRHTALGDALMTAEVYARMI 599


>UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria
           RepID=C8WX41_ALIAD
          Length = 952

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 3   RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET GL      I+EI ++ V  G+IV+    LVRP+RPI  +   +  +++A VA
Sbjct: 4   IIVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVA 63

Query: 60  DKPWIEDVIPHYYGSE---WYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107
             P   + +  + G         H+  F+R           LP  PG+ +CT+ LAR L 
Sbjct: 64  GAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILA 123

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD-ITG 166
           P +    +  Y  R+L ++       HRAL D      LL+ +   +      + + + G
Sbjct: 124 PRLMSHRLE-YLARRLRLRAEVS---HRALADARTAHQLLMRLEEKARRLPSGVIELLAG 179

Query: 167 RPSLMTTFTFG----------KYRGKAVSD 186
              L +  T G          +++G  + +
Sbjct: 180 LAGLYSPLTAGWFEQVLSRHEEHQGPPLEE 209


>UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis
           ATCC BAA-548 RepID=D1N2X3_9BACT
          Length = 185

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 16/161 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET G+      IVE+A+V V     ++    LV P   I  QA+A+H IT+ MV
Sbjct: 9   FTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMV 68

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A  P    +      +      VAHNA FD   L E           G+ + +++L +  
Sbjct: 69  AGAPSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTT 128

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           +P +   N+   +     ++T  G++ HRA  D   T  +L
Sbjct: 129 FPNLPSYNLQSLRAY-FQLETEKGMNAHRAGADVEWTRQVL 168


>UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales
           RepID=A8VXY5_9BACI
          Length = 935

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 38/225 (16%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G+       I++IA   + D +++   S  +  D+P+     ++  I+   
Sbjct: 4   YVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKRFSTYINYDKPVPAFIQSLTGISGEH 63

Query: 58  VADKPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           + + P  E+V P         ++VAHN  FD + L E           G  I T++LAR 
Sbjct: 64  LKNAPLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPVIDTVELARI 123

Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQM-- 161
             P    Y    L KT +     P     H+A  D   T AL  ++ +  SG  +E +  
Sbjct: 124 CLPSEDSYRLSDLAKTVQATHTAP-----HQADSDVEATRALFNELFDKISGLPSETLDH 178

Query: 162 ------------ADITGRPSLMTT-FTFGKYRGKAVSDVAERDPG 193
                        +I       T  F F +YRG A+  V      
Sbjct: 179 LISLSPHFKSDITEILRECRQHTVAFGFDRYRGMAIKSVHPHRKD 223


>UniRef50_Q4K5K3 Exonuclease n=3 Tax=Gammaproteobacteria RepID=Q4K5K3_PSEF5
          Length = 203

 Score =  154 bits (389), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + +ID ET G+         EIA V +  G+IV     L+     +      +  I+ AM
Sbjct: 4   IAVIDFETTGISPSSSCRATEIAVVILEQGRIVERYQSLMNAGVRVPAFIEQLTGISNAM 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           +   P  E V   +  + G    +AHNA+FD++                + C++ LARRL
Sbjct: 64  LRSAPPAEQVMNEVNEFVGITPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLARRL 123

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-------TAE 159
            P      +    +       P     HRA+ D  + A L+  +             + +
Sbjct: 124 MPAAPNHKLGTLTSF---AGLPHTGQAHRAMADAEMAANLVAHLAGELRHKHGLRELSHD 180

Query: 160 QMADITGRPSLMTTFTFGKYRG 181
            +  +   P+        ++RG
Sbjct: 181 FLCKLQKVPAAKVPEHLKRHRG 202


>UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella
           paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA
          Length = 970

 Score =  154 bits (389), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 72/183 (39%), Gaps = 23/183 (12%)

Query: 1   MLRIIDTETC---GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET       G I++IA   V + KI+N  S L+ P   I    + +  I   M
Sbjct: 33  IYAVVDLETTRTTSESGRIIQIAIAFVQNKKIINQFSTLINPHESIPRNVVQLTGINAEM 92

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           VA  P  E+V            +VAHN +FD   L           +    I T+ L++ 
Sbjct: 93  VAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQI 152

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQM 161
           +WP      +    +    V   P    H+A  D   TA LLI I N        T + +
Sbjct: 153 VWPTAPGFRLVDLTSYLALVHGRP----HQADSDALATAELLIQIFNRLESLPMVTLQSL 208

Query: 162 ADI 164
            D+
Sbjct: 209 VDL 211


>UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11
           Tax=Lactobacillales RepID=A5VK04_LACRD
          Length = 954

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 25/218 (11%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I++I  V V DG+I+N     + P   I    + +  I + 
Sbjct: 18  IYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIINHFETKINPREKIPRSIVQLTGIEDK 77

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            V   P  ED+   I        +VAHN +FD   L         P +    I T+ L++
Sbjct: 78  DVRKAPLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLSQ 137

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
            L P  K   +    +  L+++     H H A+ D   TA LL D++         T E+
Sbjct: 138 ILLPTAKSFRLRDLTS-SLHIEHD---HPHSAVSDAEATADLLNDLLKRVQELPTLTLEK 193

Query: 161 MADIT-GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRW 197
           +  +    P         + + +  S     +  Y+  
Sbjct: 194 ITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEELYVSH 231


>UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA
          Length = 929

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 26/184 (14%)

Query: 2   LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D E  G        I++I    V +GKIV+     V P RPI      +  IT+  
Sbjct: 6   YAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQ 65

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V + P   D++   Y       +VAHN  FD   L         PE+    + T+ L++ 
Sbjct: 66  VQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQI 125

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++   K Y    L    K+    P     H A  D   TA LLI I          T E+
Sbjct: 126 VFSFTKGYRLRDLTSYLKIEHDDP-----HSADSDAIATANLLIAIKKNLQQLPIVTLER 180

Query: 161 MADI 164
           + ++
Sbjct: 181 LVEL 184


>UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K987_THASP
          Length = 482

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 89/209 (42%), Gaps = 23/209 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  ID E+ G   ++  I EIA + V DG++V     LV P +PI P    +  I++AMV
Sbjct: 7   LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66

Query: 59  ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           A+ P  E   D +        +VAH+A FD   +         E     +CT+KL+R L+
Sbjct: 67  AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   ++   AL +   L          HRA+ D  +    +  +   +G+  E +A    
Sbjct: 127 PEHHRHGLDALIERHGLVCAA-----RHRAMGDVEVLWQFVRGL--EAGFAPEVLARAAA 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           R     T   G   G  +  + +    YL
Sbjct: 180 RAMKAPTQPPGLPEGM-LEALPDAPGLYL 207


>UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria
           RepID=B1I276_DESAP
          Length = 921

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      IVE+  V V DGK       LVRP RP+  +  ++  + +A +
Sbjct: 5   FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIK 111
           A++P   +V P    + G+E  V H+  FD   L    G    +   T+ LAR + PG+ 
Sbjct: 65  AERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLP 124

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
              + L     L++   PG   HRA+ D    A L   ++  
Sbjct: 125 SYRLELL-CAHLDLPERPG---HRAMEDARAAAGLFTALLER 162


>UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1
           Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ
          Length = 466

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55
           +  + DTET GL   +  IV+I ++ ++DGK+V       LV P  PI   +  IH IT+
Sbjct: 273 VYCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITD 332

Query: 56  AMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104
            MV  +P I +    ++        VAHNA FD   L               + T+ ++ 
Sbjct: 333 KMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVLVSA 392

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
            ++   +   + +    +L ++       H AL D  +TA  +  ++
Sbjct: 393 IIFGTTERHMLDVV-CERLGIRIEKK-DRHTALGDARVTAEAMKRML 437


>UniRef50_A5IU60 Exonuclease, RNase T and DNA polymerase III n=64
           Tax=Staphylococcaceae RepID=A5IU60_STAA9
          Length = 184

 Score =  153 bits (388), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 18/165 (10%)

Query: 2   LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET  G +  I  +  V VID +I      LV P    S Q + +H I    V +
Sbjct: 6   FVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVEN 65

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP 108
            P  + V P    +      VAHNA+FD  V         LP     + C+ +LA+R   
Sbjct: 66  APTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVD 125

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
             +Y    + +  +L+        HH AL D    A +   ++  
Sbjct: 126 SYRYGLKHMMEFYQLDFHG-----HHDALNDAKACAMITFRLLKN 165


>UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC
           700122 RepID=D0WHF7_9ACTN
          Length = 1045

 Score =  153 bits (388), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 24/227 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET G       + +IA+  +  G+IV      V P +PI  +   +  I +  V
Sbjct: 57  VVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFVTFVNPGKPIPEEVARLTDIHDEDV 116

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108
           AD P  +D    +  + G    VAHNA+FD+          P     WI ++ LAR   P
Sbjct: 117 ADAPSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLWIDSLDLARIALP 176

Query: 109 GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            +K   +  + K     V T      HRA  D     A    ++       + +      
Sbjct: 177 RLKSHRLIDIVKAFDAPVST------HRADADVEALCAAYRIMLAAIAKMPKDLVSYIAE 230

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
            +   ++      G    D+            ++   +  +   TL+
Sbjct: 231 LADADSWP----TGAVFKDMTNFQQAVCEAKADSPAVLEKKFPFTLR 273


>UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium
           RepID=C8W8J2_ATOPD
          Length = 978

 Score =  153 bits (388), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET GL      ++EI++  +   +I+      V P  PI  +   +  IT+  V
Sbjct: 19  IVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDV 78

Query: 59  ADKPWIED---VIPHYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPG 109
              P  ++    +  + G    +AHNA+FDR  +  +PG       WI T+ L+R   P 
Sbjct: 79  KGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPR 138

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA----LLIDIMNTSGWTAEQMADIT 165
           +    ++      +          HRA  D          LL+ +MN       ++A + 
Sbjct: 139 LSSHKLS-----SMAEAFGTMKVTHRASDDVDALCGMWRILLLGLMNLPRGLLAKLASMH 193

Query: 166 GR 167
             
Sbjct: 194 DN 195


>UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia
           RepID=B3CMS2_WOLPP
          Length = 234

 Score =  153 bits (387), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 21/166 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL       I+EI  V++I+           + P+R I   +  IH I+E  
Sbjct: 8   IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE----------WICTMKLAR 104
           + DKP   DV   +     ++  V HNA FD + L    G+           + T+ LAR
Sbjct: 68  LEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLAR 127

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           + + G   S  AL K   ++++       H AL D  + A + +++
Sbjct: 128 KKFVGSPASLNALCKRFDISLEGREL---HGALVDAQLLAKVYVEL 170


>UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI
          Length = 914

 Score =  153 bits (387), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 6   DTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           D ET G        +++IA V + D +I    +  + P + I      +  IT   V D 
Sbjct: 2   DLETTGHSPANGDRMIQIAIVIMKDWEIERTYTKFINPGKAIPSFIQDLTHITNEDVKDS 61

Query: 62  PWIED---VIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWPG 109
              E+    I        +VAHNA FD            LP+  G+ + T++LA+ L+P 
Sbjct: 62  YPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKILFPM 121

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQM 161
                +       LN++     + HRA  D   TA L      +++N    T EQM
Sbjct: 122 SLGFKLGDLAAD-LNIELA---NAHRADDDARATAELFKCCWKELLNLPQLTLEQM 173


>UniRef50_A5MUE3 Putative uncharacterized protein n=1 Tax=Streptococcus pneumoniae
           SP23-BS72 RepID=A5MUE3_STRPN
          Length = 308

 Score =  153 bits (387), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 21/201 (10%)

Query: 2   LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET    +G +  I  V  IDG+ V+    L+ P+   S + + IH I    V  
Sbjct: 5   FIALDVETANSFRGSLCSIGLVKFIDGQEVDSFYTLINPEEKFSSRNIKIHAIKPEDVIG 64

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRLWP 108
            P   +V   I ++  +   VAHNA FD   L ++           ++ C+ ++ + +  
Sbjct: 65  APTFPEVQKEIINFIDNLPIVAHNARFDAYALQDVYLKYEIPFDNIQYFCSYQVCKIILT 124

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADITGR 167
            +    +       L       L HH AL D      +L++I+  S  T+  +M    G 
Sbjct: 125 DLPNHKL-----HTLAEHFKISLDHHNALSDARACGLILLEILKLSKQTSIRKMLKNLGY 179

Query: 168 P--SLMTTFTFGKYRGKAVSD 186
           P   L+    F K +   ++D
Sbjct: 180 PELGLIGKHGFVKNKSTYIAD 200


>UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4RQP7_9ACTO
          Length = 286

 Score =  152 bits (386), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      IVEIA V +  G++V+  + LV P R   P    +H IT  M+
Sbjct: 37  FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEML 94

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           +  P   DV             VAHNA F+   + +          P   +CT++LAR++
Sbjct: 95  SGAPTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQV 154

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
                +  ++      + +        H AL D   TA LL
Sbjct: 155 LAAPNFQLVSCCTVYGIELH-----DAHTALGDTRATAQLL 190


>UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2
           Tax=Campylobacter RepID=C6RD51_9PROT
          Length = 311

 Score =  152 bits (386), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D ET G    G I+EI ++ + +G+I+      V     +      +  IT   +
Sbjct: 72  IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVYAP-YVPENISELTGITAEHL 130

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P +  V+     + G   +VAHN  FD   +          E+    +CT+ LARR 
Sbjct: 131 KNAPSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGYGELLNRKLCTIDLARRT 190

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163
               KY    L +   ++        HHRAL D    A +    +  + +   T E + +
Sbjct: 191 IASPKYGLGTLKEILGIDNT------HHRALSDAIAAAEIFKYSLQKLPSEVRTTEDLIE 244

Query: 164 ITGRPSLMTTF 174
            +     M   
Sbjct: 245 FSKSAKTMKRL 255


>UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae
           RepID=B4S8Q4_PROA2
          Length = 180

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 5   IDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           +D ET GL       ++E+A+V +++G I      L+  + PI      IH IT  ++A 
Sbjct: 16  VDVETTGLSPRRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTVVQKIHGITPELLAG 75

Query: 61  KPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPG 109
           +   E V P +    GS   +AHNA FD   +          +     CT+  +R+ +P 
Sbjct: 76  EKPPEAVWPEFLKFIGSNILIAHNAPFDISFIRNELRFLGLSLLNGSQCTLAFSRKKFPQ 135

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +K   +       L    P G+  HRA  D  +TA +   I NT 
Sbjct: 136 LKNHKLENVARHVLG-GMPKGIKLHRASGDALLTAMIWQVIENTQ 179


>UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella
           RepID=C4FB13_9ACTN
          Length = 977

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 17/162 (10%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET GL      ++EIA+  +   +IV+     V+P   I  +   +  IT   V
Sbjct: 47  VIVLDTETTGLSHRDSELIEIAAARLRGREIVDRFDTFVKPSGLIPEEITKLTSITNVDV 106

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE------WICTMKLARRLWPG 109
           A  P   D    +  + G    VAHNA+FDR  + ++PG       WI ++ L+R   P 
Sbjct: 107 AHAPSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSDIWIDSLALSRIALPR 166

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +    +A+        ++      HRA  D      +   ++
Sbjct: 167 LASHKLAV-MAELFGCESVS----HRANADVEALCGVWRILL 203


>UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FTI9_9FIRM
          Length = 828

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 21/162 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET G        I++I +V + DG+++   S L+ P+R I     AI  I    
Sbjct: 8   IAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHSMLLNPERNIPTHITAITGIQSDQ 67

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           V D P    V           ++VAHN  FD   L         +     + T++LA+  
Sbjct: 68  VQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPALDTVQLAKIF 127

Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
            P     N+  L +   LN Q       H AL D  +TA LL
Sbjct: 128 LPQAPGFNLQDLSQFFGLNFQ-----DAHDALGDARMTAHLL 164


>UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium
           HTCC2207 RepID=Q1YU82_9GAMM
          Length = 528

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 25/201 (12%)

Query: 3   RIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            ++D ET G +     I+EI  + +  GK++      V P+  + P    +  I  +M+ 
Sbjct: 25  VLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSFVDPETVLPPFIQKLTGIAPSMLR 84

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
             P   +V   +  Y      VAHNA FD   L             + +C++K +R L+P
Sbjct: 85  GAPLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKPLCSVKFSRSLYP 144

Query: 109 GIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMA 162
             K   +  + K  +L     P  + HRAL D  +     +           G T   + 
Sbjct: 145 QFKRHGLDQIIKRFQL-----PIENRHRALDDAEMIQRFFLKSSALFSDEEIGATCASLL 199

Query: 163 DITGRPSLMTTFTFGKYRGKA 183
                P L+      K    A
Sbjct: 200 KNPALPPLLKASDIKKLPASA 220


>UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae
           RepID=A0M4R6_GRAFK
          Length = 507

 Score =  152 bits (384), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET G       I EI  + V +GK+++  S LV P + I      +  I + MV
Sbjct: 6   FAITDIETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMV 65

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            + P   ++            +VAHN +FD  ++         +   + +CT++L ++L 
Sbjct: 66  FNAPQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLI 125

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           PG+  YS   +  +  +     P +  HRA  DC  T  L    +
Sbjct: 126 PGLFSYSLGNICTSINI-----PHIDRHRAKGDCDATVTLFQRCI 165


>UniRef50_C6B6E1 Exonuclease RNase T and DNA polymerase III n=3
           Tax=Alphaproteobacteria RepID=C6B6E1_RHILS
          Length = 262

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 24/234 (10%)

Query: 2   LRIIDTETCGLQ-GGIVEIASVDVIDG-----KI-VNPMSHLVRPDRPISPQAMAIHRIT 54
           +R++D ET G     + E+   DV+ G     ++     S L+ P RPISP+ MAIH I 
Sbjct: 19  IRVVDLETAGNGLNDVCEVGWQDVVLGHDGGWQVDEERGSLLINPGRPISPETMAIHHIV 78

Query: 55  EAMVADKPWIEDVIPHYYGSE----WYVAHNASFD-RRVLPEMPG--EWICTMKLARRLW 107
           +A VA  P+ +++       E       AH ASF+ R   P   G   WICT K A RLW
Sbjct: 79  DAEVATAPFWKEIASSVLRPEGGVIALAAHRASFEQRYCTPRFTGGAAWICTWKCALRLW 138

Query: 108 PGIKYSNMALYKTRKL--NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           P +   +  + +  ++   +    GL  HRA+ D Y+TA  L D++N S  T EQ+   +
Sbjct: 139 PELPRFSNQMLRYLRMPEGLVHAIGLPAHRAMPDAYVTAHHLRDMLNES--TFEQLVKWS 196

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             P L+     G  RGK+       D   +  L         +LR + +  L  
Sbjct: 197 SEPGLLPRVPSGPERGKS------WDRLDIAALQAFARDRDADLRFSAETELRR 244


>UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K928_THASP
          Length = 502

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 86/212 (40%), Gaps = 30/212 (14%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L  +D ET G    +  I EI  V V  DG  V   S LVRP   I      +  I + M
Sbjct: 12  LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASRIPETIQRLTGIDDDM 69

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFD--------RRVLPEMPGEWICTMKLARRL 106
           VAD P  ED+            +VAHNA FD        RR   +M  + +CT+KL+RRL
Sbjct: 70  VADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRL 129

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163
           +P  +   +  L +   L V        HRAL D  +       I      G     + +
Sbjct: 130 FPDHRRHGLDHLIERHGLAVA-----DRHRALGDARLLWQFWQKIHERFPPGHIDAAVRE 184

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           + G PSL           + ++D+ +    YL
Sbjct: 185 LIGHPSLPPHLDP-----EQIADLPDTPGVYL 211


>UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii
           MLHE-1 RepID=Q0A6Z2_ALHEH
          Length = 714

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 37/177 (20%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + D E  GL       I+ IA V V++G+++       ++ P RPI P ++  H IT+
Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568

Query: 56  AMVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLW----- 107
             V DKP IE V+P    + G    VAHNA+FD + +     E       A   +     
Sbjct: 569 DDVQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKERE-------AGVRFDNPVL 621

Query: 108 -----------PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
                          +S  AL     + +        H AL D   TA LL+ I+  
Sbjct: 622 DTLLLSALLDGDEEDHSLDALCDRYGIAITG-----RHTALGDTLATAELLVRIIER 673


>UniRef50_Q1RJM1 DNA polymerase III subunit epsilon n=15 Tax=Rickettsia
           RepID=DPO3E_RICBR
          Length = 229

 Score =  151 bits (383), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 28/211 (13%)

Query: 3   RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            I+DTET GL       IVEI ++++++  +        + P+R +  +A  IH I+   
Sbjct: 7   IILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISGEF 66

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101
           + DKP    +      +      V HNA FD + L                    I T+ 
Sbjct: 67  LKDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDTLV 126

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
           +AR ++PG KYS  AL K  K++     G   H AL D  + A + +++      +A +M
Sbjct: 127 MARSMFPGSKYSLDALCKRFKVDNS---GRQLHGALKDAALLAEVYVELTGGR-QSAFKM 182

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDP 192
            D   + + +   ++ +   +A  ++    P
Sbjct: 183 LD---KAAKINNLSYNRLDSQAHRNIPVIKP 210


>UniRef50_A9HKJ8 Exonuclease RNase T and DNA polymerase III n=1
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=A9HKJ8_GLUDA
          Length = 269

 Score =  151 bits (383), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/236 (34%), Positives = 109/236 (46%), Gaps = 27/236 (11%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDV-IDGKIV-----NPMSHLVRPDRPISPQAMAIH 51
            +R+ID ET G     GGIVEI   DV  D          P + L  P  PI+PQ MAIH
Sbjct: 15  FVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIH 74

Query: 52  RITEAMVADKPWIEDVIPHYY----GSEWYVAHNASFD----RRVLPEMPG---EWICTM 100
            IT+A V D P   ++ P             AH ASF+    R  LP        WICT 
Sbjct: 75  HITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTY 134

Query: 101 KLARRLWPGIK-YSNMALYKTRK-LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           K A RLWP    +SN  L  +R+   ++   G   HRA  D Y+TA  L D++  +  T 
Sbjct: 135 KCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTAHHLRDMLALA--TV 192

Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
           EQ+   +  P+L+T    G  RG+ + ++A    G L  L        P+L  TL+
Sbjct: 193 EQLLRWSREPALLTRVPHGPLRGRQIRNLAT---GDLDRLLAEDRRRGPDLAFTLR 245


>UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales
           RepID=A5KMD9_9FIRM
          Length = 279

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+EI ++ V DGK+       ++P   ISP    +  I+  MV
Sbjct: 39  YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 98

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A       VI  +      +  + HN  FD                   I T+K+A+++ 
Sbjct: 99  ASARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMGIDTLKIAKKVH 158

Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           P ++  S  AL +  K+  +       HRA +D   TA L   +
Sbjct: 159 PELESKSLSALCEHYKIENKA-----AHRAYFDALATAKLYQTL 197


>UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK
          Length = 801

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G      G I++I    + + +I++     V P +PI      +  I++  
Sbjct: 7   FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIIDHFESFVNPAQPIDRNIQQLTHISQKE 66

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARR 105
           V + P+ E++ P   +       +AHN +FD         R   PE+    I T++LA+ 
Sbjct: 67  VKNAPYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQLAQI 126

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           L P    Y  + L     + +      + HRA  D + TA L + +
Sbjct: 127 LLPTAPGYRLLDLTTYLNITLN-----NAHRANADAHATALLFLSL 167


>UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME
          Length = 234

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 25/180 (13%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRP-DRPISPQAMAIHRITEAM 57
            + DTET GL+     ++EI  V++++           + P  R + P A+A+H I+   
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE----------MPGEWICTMKLAR 104
           + DKP   +++  +         VAHNA FD   +                 + T+ LAR
Sbjct: 64  LLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALAR 123

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN----TSGWTAEQ 160
           R  P    S  AL K   ++         H AL D  I A + I+++       G T E 
Sbjct: 124 RKHPIGPNSLDALCKRYGIDNSHRTL---HGALLDAQILAEVYIELIGGKQTALGLTMES 180


>UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular
           protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR
          Length = 532

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 77/209 (36%), Gaps = 24/209 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  +D ET G       I EI  V+V    IV     L+ P   I P    +  I++ MV
Sbjct: 33  IVFVDLETTGADAQRDRITEIGVVEVGPDGIVE-WETLLDPGMSIPPFIQRMTGISDDMV 91

Query: 59  ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P  E   + +        +VAHNA FD   L             + +CT++L+R L+
Sbjct: 92  RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSLF 151

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P + ++   AL     L          HRAL D  +       I   + ++ E +     
Sbjct: 152 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKI--HATYSVELVEAAVR 204

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
                 +   G     A+ DV      Y+
Sbjct: 205 TLVRRASLPAG-LEETALEDVPASPGVYI 232


>UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1
           Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE
          Length = 289

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 24/191 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D ET G    G I+EI ++ + +G+I+      V     +      +  IT   +
Sbjct: 72  IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVHAP-YVPENISELTGITAEHL 130

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P +  V+  +    G   +VAHN  FD   +          E+    +CT+ LARR 
Sbjct: 131 KNAPNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGYGELLNHRLCTIDLARRT 190

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163
               KY    L +   +N        HHRAL D    A +    +  + +   T E + +
Sbjct: 191 IASPKYGLGTLKEILGINNA------HHRALSDAIAAAEIFKYSLQKLPSEVKTTEDLIE 244

Query: 164 ITGRPSLMTTF 174
            +     M   
Sbjct: 245 FSKSAKTMKQL 255


>UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus
           RepID=B5EMD9_ACIF5
          Length = 248

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G+       ++EI +V++ID ++        + P R   P+A+ IH +T+  
Sbjct: 6   VVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEF 65

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           + D+P   +V      + G    + HNA FD   L           +    + T+  ARR
Sbjct: 66  LQDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARR 125

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
             PG K    +L +   +          H AL D  I A + + +
Sbjct: 126 RHPGQKNDLNSLCRRYSVENSHREL---HGALLDTRILAEVYLAM 167


>UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO
          Length = 465

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 21/178 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56
             + D+ET GL      +V++ +V V++GKI+       LV P R I P + A+H+I++A
Sbjct: 273 FVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNPGRTIPPGSTAVHQISDA 332

Query: 57  MVADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105
           MVAD P  +        +      VAHNA FD   L               + T+ L+  
Sbjct: 333 MVADAPGFDVACRAFHQFAEHAVIVAHNAPFDMAFLRRQCRDQDYAFDNPILDTVHLSAV 392

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI---MNTSGWTAEQ 160
           ++ G     +      +LNV  P  +  H  L D   TA  L+ +   +   G+T  +
Sbjct: 393 VFGGSAEHTLD-ALCDRLNVHIPDDV-RHTGLGDALATAKALVALIPVLEARGFTTFE 448


>UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EF57_9CLOT
          Length = 319

 Score =  150 bits (380), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 27/208 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET G       I+E+ ++ + +G++V   S L +P R +    + +  I+  M+
Sbjct: 22  YVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEML 81

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
           A  P + DV P    + G    V HN  FD            L     + +  + L+R+L
Sbjct: 82  ASAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKL 141

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID---IMNTSGWTAEQMAD 163
            P +    +    +   N+        HR+L+DC  T         +        + ++ 
Sbjct: 142 LPDLTSHKLCRV-SSHFNICVEGM---HRSLFDCKTTFECFEKCRILAKERYGQVDNLSQ 197

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERD 191
           +  RP   T       + KA   + E D
Sbjct: 198 VF-RPIKRTPCP----KLKACDILPECD 220


>UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF
           19.5.1 RepID=C5CIX0_KOSOT
          Length = 185

 Score =  150 bits (380), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKI-VN-PMSHLVRPDRPISPQAMAIHRIT 54
           +  +IDTET G        I+EIA++ +  GK+ V+     LV P   I      IH + 
Sbjct: 4   VYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLK 63

Query: 55  EAMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKL 102
              V  +P I DV P +    G+   V H+   D +             +  ++I T+K+
Sbjct: 64  NEDVTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKI 123

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           A+ L+    YS   L K  K+          HRAL D  +T  + + ++   G 
Sbjct: 124 AKDLFKEGSYSLAELAKRLKI-----KDAPTHRALDDARVTGKVFLAMVKKLGG 172


>UniRef50_B7I2S0 Exodeoxyribonuclease X, putative n=17 Tax=Acinetobacter
           RepID=B7I2S0_ACIB5
          Length = 234

 Score =  150 bits (380), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 22/228 (9%)

Query: 3   RIIDTETCGLQGGIVEIAS--VDVIDGKIV----NPMSHLVRPDRPISPQAMAIHRITEA 56
            I+DTET  L G  +EIA   +++  GK+          L +   PIS  AMA+H I E+
Sbjct: 10  IILDTETHTLNGLPIEIAYAPIEINAGKLTLDKSKLFDQLYQVGTPISYAAMAVHHILES 69

Query: 57  MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEMPGEW-----ICTMKLARRLWPGI 110
            + ++P  +   +P    + + + HN  +D   +     +      ICT+ LAR+ WP  
Sbjct: 70  DLENQPHYKTFKLPD--TTTYIIGHNIDYDIAAIARCGVDVSHIKPICTLALARKTWPDA 127

Query: 111 KYSNMALYK---TRKLNVQTPPGLHHHRALYDCYITAALLIDIM-NTSGWTAEQMADITG 166
           +  N++      ++  +         HRA  D  +TA +L+ I+ + +    E++  ++ 
Sbjct: 128 EAHNISALIYMISQGSSKARELLKGAHRADADIILTANILMHIVYHLNIHDIEELYRVSE 187

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
              + TT  FGK++G A++++ +    Y++WL    D +   LR  L+
Sbjct: 188 EARIPTTINFGKHKGTAIAELPK---DYIQWLLRQ-DELDVYLRKALE 231


>UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale
           ATCC 33656 RepID=C4ZI99_EUBR3
          Length = 245

 Score =  150 bits (380), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 31/215 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID E  GL      I+EI +  V  G+IV+ +S LV P + I  +   +  IT++ V
Sbjct: 10  YTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVDTISTLVNPKQHIPQRVQELTGITDSDV 69

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            +   +++    + ++ G +  +  N +FD   L +        +      T+K+AR+  
Sbjct: 70  ENAADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAYDTLKIARKCL 129

Query: 108 PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P  +   +  L +   ++ +     + HRAL D   T  +   ++         + D  G
Sbjct: 130 PAEQSKKLEDLCEYFGVSRK-----NAHRALDDAIETKQIFEKLL--------ALMDEKG 176

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201
            P          Y+ K  +         LR L   
Sbjct: 177 EPVESKPLV---YKAKKQTPATAHQVRQLRELMAE 208


>UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class)
           RepID=B9KXM0_THERP
          Length = 693

 Score =  150 bits (380), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL+     I+EI +V   DG  V   S LV P R +    + +  I +  +
Sbjct: 86  FVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHRRLPVYIVRLTGIRDEDL 145

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
              P   DV      + G    + +N  FD   L           +P   +  + LAR L
Sbjct: 146 LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPLARAL 205

Query: 107 W-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
                +Y   A+ ++  L          HRAL D   TA L + ++  +  
Sbjct: 206 LTANGRYDLDAICRSIGLA-----RGTRHRALPDAEATAVLYLHLVERAEQ 251


>UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM
          Length = 178

 Score =  150 bits (379), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 2   LRIIDTETCGLQG-GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
             + D ET   +   I  I    V +GKI      LV P+       + +  I++A V D
Sbjct: 4   FIVFDVETPNRKNNRISAIGITVVEEGKISKEFYSLVNPETNFDYFNVKLTGISKASVKD 63

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARRLW 107
            P   ++       +     VAHNASFD  VL                ++CT+K+ R L+
Sbjct: 64  APTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTVKMGRSLF 123

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           P   +    + +   ++      L HHRA  D +  A +L+  +   
Sbjct: 124 PDRSHKLNMVCEDFGIS------LQHHRADSDSHACAEILLRYLEAG 164


>UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus
           RepID=C6CUG6_PAESJ
          Length = 953

 Score =  150 bits (379), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 21/164 (12%)

Query: 2   LRIIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G  +   I+++    + D  +IV   S  VRP   I      +  I   MV
Sbjct: 3   FAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDADMV 62

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           AD P +++V+     Y      VAHN +FD   L +           G  + T++L R L
Sbjct: 63  ADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTIELLRIL 122

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID 149
           +P I  Y   A+ +   +         HHRA  D   TA L   
Sbjct: 123 YPSITTYQLGAVTELFGIAHD-----QHHRADSDAIATAELFAQ 161


>UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter
           RepID=Q16CY8_ROSDO
          Length = 228

 Score =  150 bits (379), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 21/168 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        IVEI +V+++            + P+R +  +A  +H + +  
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104
           + DKP   +V      + G    V HNA+FD + L    G          + I T+ +AR
Sbjct: 64  LRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAIDTLDIAR 123

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           + +PG   S  AL +   ++  +      H AL D  I A + ++++ 
Sbjct: 124 KRFPGSPASLDALCRRFGIDNTSRTL---HGALLDSEILAEVYLELIG 168


>UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms
           RepID=Q1LGD6_RALME
          Length = 530

 Score =  149 bits (378), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVI-DGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  +D ET G       I EI  V+V  DG  +     LV P   I P    +  IT+ M
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDG--IQEWDTLVDPLTSIPPFVQGLTGITDEM 92

Query: 58  VADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V  +P      + +        +VAHNA FD   L             + +CT++L+R L
Sbjct: 93  VRGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSL 152

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA--EQMAD 163
           +P + ++   AL     L          HRAL D  +       I            +  
Sbjct: 153 FPSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHEIYSVDLVESAVTS 207

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           +    SL            A+ DV +R   YL
Sbjct: 208 LVKHASLPAGL-----EEAALDDVPDRPGVYL 234


>UniRef50_Q6MC14 Putative DNA polymerase III, epsilon chain, mutD n=1 Tax=Candidatus
           Protochlamydia amoebophila UWE25 RepID=Q6MC14_PARUW
          Length = 216

 Score =  149 bits (378), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 27/208 (12%)

Query: 16  IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYY--- 72
           ++EIA+ D +  +        V P  PI P++ AIH IT+ MVA+     DV   +    
Sbjct: 1   MIEIAAYDPVQNR---RFEKFVHPGFPIPPESTAIHHITDEMVANAGSFADVGAEFVEFC 57

Query: 73  -GSEWYVAHNAS-FDRRVLPE--------MPGEW--ICTMKLARRLWPGIKYSNMALYKT 120
            G    +AHN   FD   L          +P  W  + ++K ARR    +    +   + 
Sbjct: 58  AGEVVLIAHNNDNFDLHFLRHEFERNQLILPTHWKFLDSLKWARRYRSDLPRHTLQFLR- 116

Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180
               +      + HRAL D  +   +   +++      + + D+  RP  +    FGK++
Sbjct: 117 ---EIYGITANNAHRALDDVIVLERVFRSMVDDL--EIQDVFDLLNRPRAIQHMPFGKHQ 171

Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPE 208
           G+ ++ + +    Y+ WL        PE
Sbjct: 172 GQPLNKIPK---NYISWLATTGAFDKPE 196


>UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium
           adolescentis L2-32 RepID=A7A526_BIFAD
          Length = 256

 Score =  149 bits (378), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 20/162 (12%)

Query: 5   IDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           ID ET G       IVEI ++ V +G+ V   S L+ P RP+  +   ++ +T+A + ++
Sbjct: 89  IDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLINPQRPLPEEITRLNGLTDADLRNQ 148

Query: 62  PWIEDVIPH---YYGSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARRLWP 108
           P ++ V+P    + G++  + HN + FD   L           +  + I T+ L R L+P
Sbjct: 149 PTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMRHIGNKTIDTLPLDRALYP 208

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
                 +     R+  +        HRA  D   TA     +
Sbjct: 209 EEPKHRLVDI-IRRFGIAQTES---HRAADDALQTAQCYETM 246


>UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8CUQ0_OCEIH
          Length = 195

 Score =  149 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (10%)

Query: 2   LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              ID ET   +      +  V + D +I++    L+ P        + IH ITE  V +
Sbjct: 4   FAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQE 63

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108
            P   ++ P    Y      +AHNASFD  VL +   ++         +CT+K++R +WP
Sbjct: 64  APTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRLIWP 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163
            ++   +       +       L+HH A+ D   +A + +  +      T E+  +
Sbjct: 124 QLENHKL-----HTVANHHGIALNHHHAMDDARASAKIFLASLAEQKIGTTEEFIE 174


>UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum
           NCIMB 41171 RepID=UPI00019768DE
          Length = 180

 Score =  149 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G+      I+E  +V V+D K V+    LV P R ++P    +  IT  M+
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQLVNPMRNLNPFITQLTGITPDML 70

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLP---------EMPGEWICTMKLARR 105
              P ++ V+P +    G +  + HN   FD + +           +P   I T++++R 
Sbjct: 71  EPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQMSRS 130

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           ++P      +     ++ ++     +  HRAL D   T      + +  
Sbjct: 131 MYPQYNRHRLVDL-IQRFDIA---DVEEHRALSDAEQTQMCFEYMRDEQ 175


>UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U7J6_HYDS0
          Length = 196

 Score =  149 bits (377), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 19/167 (11%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET GL      I+EI +  V   +I      L+ P   I  +   I  IT AM
Sbjct: 11  IYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAM 70

Query: 58  VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           +  +P +E +I    ++      V HN  FD   L          ++    ICT++L+++
Sbjct: 71  LVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLELSKK 130

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           L P +K   ++       N++       HRA  D  +T  +   +M+
Sbjct: 131 LIPNLKSYKLS-AVADYFNIKYERL---HRAKDDALLTYNIFNKLMD 173


>UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter
           RepID=B9KCR0_CAMLR
          Length = 254

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D E+ G    G I+EI +V + + K ++     V+ +  I      +  I+  MV
Sbjct: 71  IFCVVDIESTGGIKSGQILEIGAVKIQNYKEIDRFESFVKVE-SIPENITELTGISLDMV 129

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
            + P ++ V+ +   +     +VAHN  FD   + +         +    +CT+ LA++ 
Sbjct: 130 ENAPSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLCTIDLAKKC 189

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW---TAEQMAD 163
               KY   AL +   +         HHRAL D    + +L   +    +     E++  
Sbjct: 190 IESPKYGLDALKEFLCIE------SKHHRALSDALAASEILKYCLKKIPFYIKNTEELLH 243

Query: 164 ITGRPS 169
            + +  
Sbjct: 244 FSKQAK 249


>UniRef50_C7M4L1 DNA polymerase III, epsilon subunit n=2 Tax=Capnocytophaga
           RepID=C7M4L1_CAPOD
          Length = 442

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G +    GI +IA       +I +    L+ P+RPI      +  I   M
Sbjct: 1   MYAILDIETTGGKYNEEGITDIAIYQFNGHEITDQFISLINPERPIQEFVTKLTGINNKM 60

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           + + P   +V   I         V HNA+FD R+L         +     +CT++L+ RL
Sbjct: 61  LRNAPKFYEVAKRIVEITTDCIIVGHNAAFDYRILQTEFRRLGYDFVRTTLCTVELSERL 120

Query: 107 WPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            P    YS   L ++  +     P    HRA  D   T  L   ++  
Sbjct: 121 IPNKESYSLGKLVRSLGI-----PVSDRHRASGDALATLKLFKYLLEK 163


>UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified
           Erysipelotrichaceae RepID=A8RD59_9FIRM
          Length = 1447

 Score =  149 bits (377), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 22/207 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E     V D   +  +   ++P  PI    + +  I+E  V
Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLFIKPPVPIPAHIVELTGISEEHV 458

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
            +     +    I  + G    VAHNA FD   L           +    I T+ LAR +
Sbjct: 459 RNAKSFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKPLDNPVIDTLDLARSM 518

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                Y    + ++  +          HRA YD  + A   ++++N      + + ++  
Sbjct: 519 QDRKGYRLGQIARSYGIRYDEDV---AHRADYDAEVLANTYMNMLN----DLKHIQNLAA 571

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193
              +    +F K R K V+ + +   G
Sbjct: 572 LQDMQNARSFTKVRAKHVTILVKNAAG 598


>UniRef50_A5WEC5 Exodeoxyribonuclease X n=1 Tax=Psychrobacter sp. PRwf-1
           RepID=A5WEC5_PSYWF
          Length = 237

 Score =  149 bits (377), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 23/235 (9%)

Query: 3   RIIDTETCGL-QGGIVEIA--SVDVIDGKIV---NPMSHLVRPDRPISPQAMAIHRITEA 56
            I+DTET GL    + E A   + + + KI     P S    P +PIS  +MA   I + 
Sbjct: 4   YILDTETTGLVDPHMTEAAYSIIAINNAKIEVIQAPRSKRFNPLKPISLGSMATSHICDE 63

Query: 57  MVADKPWIEDV-IPHYYGSEWYVAHNASFDRRVLPEM----PGEWICTMKLARRLWPGIK 111
            VA +P   +  +P+    E+ V HN  +D  VL         + ICT  ++  L P ++
Sbjct: 64  DVAHEPPHTEFRLPN--SVEYLVGHNIDYDMAVLKNAGVTHTPKLICTKAMSSYLLPTLE 121

Query: 112 YSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWT---AEQMADI 164
              + +L       V      H H A+YD Y T  +L   I++ N+ G      E +   
Sbjct: 122 SHKLVSLLYHFHRQVAREQAKHAHAAIYDIYFTQLVLGSLIELANSQGHNITDVESLYQF 181

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERD--PGYLRWLFNNLDSMSPELRLTLKHYL 217
           +    + T  +FGKY+G+A++++A      GYL+WL    D++ P L    +  L
Sbjct: 182 SEMARIPTHLSFGKYKGQAITELAASSDGAGYLKWLMGQ-DNIDPYLAEACQQAL 235


>UniRef50_P43745 DNA polymerase III subunit epsilon n=159 Tax=Proteobacteria
           RepID=DPO3E_HAEIN
          Length = 256

 Score =  149 bits (376), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 29/179 (16%)

Query: 3   RIIDTETCGLQ--------GGIVEIASVDVIDGKIVNPMSH-LVRPDRPISPQAMAIHRI 53
            ++DTET G+           I+EI +V++I+ +      H  ++PDRP  P A+ +H I
Sbjct: 8   IVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVHGI 67

Query: 54  TEAMVADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWIC---- 98
           T+ M+ADKP  ++V   +         + HNA FD   +          +  + IC    
Sbjct: 68  TDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLVTD 127

Query: 99  TMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           T+++AR+++PG + +  AL     ++         H AL D  I A +   +M T G T
Sbjct: 128 TLQMARQMYPGKRNNLDALCDRLGIDNSKRTL---HGALLDAEILADVY--LMMTGGQT 181


>UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema
           RepID=Q73L66_TREDE
          Length = 217

 Score =  149 bits (376), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 21/179 (11%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +    DTET G +     +VEI  V      ++   + L+ P++P+ P+A  +++IT+ M
Sbjct: 15  VFTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           +A +P   +V+P +     +   VAHNASFD   +          ++  +   T+  AR 
Sbjct: 75  LAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARE 134

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
             PG+  Y+   L     +       ++ HRA  D  +        ++      + M D
Sbjct: 135 TLPGLQSYALQNLATQFGV-----QAVNAHRAEDDARVCMEFFKIAVSHFFEKNKDMLD 188


>UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum
           RepID=DPO3E_TREPA
          Length = 215

 Score =  149 bits (376), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 19/163 (11%)

Query: 5   IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
            DTET GL+     I+EI +V      I+   S L+ PDR I P    I+ IT+ M+ +K
Sbjct: 18  FDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDMLVNK 77

Query: 62  PWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPG 109
           P   +++     +      VAHNA+FD   L           +  + + T  +A+ ++PG
Sbjct: 78  PRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAVFPG 137

Query: 110 IKYSNMALYKTRKLNVQTPPGLH-HHRALYDCYITAALLIDIM 151
           +       Y+ + L +Q    +H  HRA  D  +   L   ++
Sbjct: 138 LGRHQ---YRLQNLALQFGLTVHAAHRAEDDARVCMELFTTMI 177


>UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM
           4252 RepID=D0MIT4_RHOM4
          Length = 616

 Score =  148 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 23/163 (14%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRIT 54
           +  + DTET GL       I+ I +V ++ G+I        LV P RPIS  ++ +H I 
Sbjct: 421 IYTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRPISLDSVRVHGIQ 480

Query: 55  EAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLA 103
             ++ DKP IE+V+P +Y        V HN +FD + + +             + TM LA
Sbjct: 481 PVLLQDKPPIEEVLPRFYRFARDTVLVGHNVAFDLKFIRQKEKALGLRFDQPVLDTMLLA 540

Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA 145
             + P  + Y    L     +       +  H AL D  ITA 
Sbjct: 541 AVVDPERQHYGLDELAAAFGI-----EPVGRHSALGDALITAE 578


>UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA
          Length = 948

 Score =  148 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 28/228 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I++I  V V   +++N     V P + I      +  IT  
Sbjct: 6   VYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVINHFETDVNPLKEIPAAISRLTGITNK 65

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            V   P  +DV   +     +  +VAHN +FD   +         P +P   + T+ L++
Sbjct: 66  RVRHAPLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVSLSQ 125

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P    +    L +   +    P     H A  D   TA L I +          T +
Sbjct: 126 ILLPTATSFRLRDLSRLFNIEHDNP-----HSADSDASATAELFIFLFRRLRALPMVTLQ 180

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207
           +M D+     L TT  F   + +       + P YL ++ N L    P
Sbjct: 181 RMIDLQADLPLQTTTLFRVAQ-QLNEQSPRKLPDYL-YIKNGLALRQP 226


>UniRef50_C9LVZ2 Exonuclease n=2 Tax=Veillonellaceae RepID=C9LVZ2_9FIRM
          Length = 202

 Score =  148 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 20/180 (11%)

Query: 2   LRIIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRP-DRPISPQAMAIHRITEAMVA 59
              ID ET  G       +A+V+V DG++    + L++P         + IH I+   V 
Sbjct: 20  YIAIDFETATGSMNSACSVATVEVRDGQLKEGWTTLIQPPGLRFDSFNIGIHGISPKDVT 79

Query: 60  DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP------EMPGEWI---CTMKLARRLW 107
           D P   +V          +  VAHNASFD  VL        +   +    CT+++AR++W
Sbjct: 80  DAPTFAEVWEELKERLAGKIVVAHNASFDMGVLKASLLANRLQAPYFRTCCTVRIARKVW 139

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI-DIMNTSGWTAEQMADITG 166
           P +    +       +         HHRAL D    AA+L+   M T     E++A   G
Sbjct: 140 PALDDHKLNT-----VGAHLNINFRHHRALDDARTCAAILLFAGMETGTDDIEELAQKIG 194


>UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola
           RepID=DPO3E_BUCBP
          Length = 245

 Score =  148 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 33/226 (14%)

Query: 3   RIIDTETCGLQG--------GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53
            ++D ET G+           I+EI +V++I+           ++P+R I  Q+  IH I
Sbjct: 8   IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67

Query: 54  TEAMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWI 97
           T+  + DKP   ++      Y  +   + HNA FD   +                    +
Sbjct: 68  TDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCNVV 127

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
            T+ LAR+L+PG K S  AL    K+NV        H AL D  + A +   + +     
Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVS---HRDFHSALIDAKLLAKVYTFMTSFQQSI 184

Query: 158 A-----EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
           +       +  I     L +   F      A  D  ++   YL+++
Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYV 230


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteria...   289   6e-77
UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20 ...   239   5e-62
UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Ente...   231   1e-59
UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alic...   223   2e-57
UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ...   214   2e-54
UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod...   212   9e-54
UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac...   208   1e-52
UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos...   208   1e-52
UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte...   204   1e-51
UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia...   203   3e-51
UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth...   201   1e-50
UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri...   200   2e-50
UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia...   199   5e-50
UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc...   199   7e-50
UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto...   198   9e-50
UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte...   198   1e-49
UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu...   198   1e-49
UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba...   197   2e-49
UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=...   197   2e-49
UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu...   195   1e-48
UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte...   194   2e-48
UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti...   194   2e-48
UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane...   193   3e-48
UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi...   193   3e-48
UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R...   193   3e-48
UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseu...   193   4e-48
UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha s...   193   4e-48
UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit...   192   5e-48
UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=...   192   5e-48
UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A...   192   7e-48
UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T...   192   9e-48
UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp....   192   9e-48
UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep...   191   1e-47
UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot...   191   1e-47
UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero...   191   1e-47
UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor...   191   2e-47
UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7...   191   2e-47
UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algorip...   191   2e-47
UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte...   190   2e-47
UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult...   190   3e-47
UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinob...   190   3e-47
UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost...   190   4e-47
UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re...   190   4e-47
UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bact...   189   4e-47
UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do...   189   5e-47
UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc...   189   6e-47
UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asti...   189   6e-47
UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R...   189   7e-47
UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin...   188   9e-47
UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb...   188   1e-46
UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti...   188   1e-46
UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca...   188   1e-46
UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri...   188   1e-46
UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lo...   187   2e-46
UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit...   187   2e-46
UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom...   187   2e-46
UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus...   187   3e-46
UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept...   187   3e-46
UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive...   186   4e-46
UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh...   186   5e-46
UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax...   186   5e-46
UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand...   186   6e-46
UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep...   186   7e-46
UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib...   186   7e-46
UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd...   185   7e-46
UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl...   185   1e-45
UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphi...   185   1e-45
UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid...   185   1e-45
UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo...   184   1e-45
UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI...   184   2e-45
UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A...   184   2e-45
UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo...   184   2e-45
UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alterom...   184   3e-45
UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero...   183   3e-45
UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy...   183   3e-45
UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magn...   183   3e-45
UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr...   183   4e-45
UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex...   182   5e-45
UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemma...   182   5e-45
UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1...   182   7e-45
UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Prot...   182   7e-45
UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill...   182   1e-44
UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop...   181   1e-44
UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran...   181   1e-44
UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord...   181   1e-44
UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en...   181   1e-44
UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot...   181   1e-44
UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit...   181   2e-44
UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell...   181   2e-44
UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta...   180   2e-44
UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ...   180   3e-44
UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon...   180   3e-44
UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para...   180   4e-44
UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida...   180   4e-44
UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1...   179   4e-44
UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ...   179   5e-44
UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphi...   179   5e-44
UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostri...   179   5e-44
UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=...   179   6e-44
UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive...   179   6e-44
UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi...   179   7e-44
UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu...   179   7e-44
UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridi...   179   8e-44
UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam...   178   9e-44
UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T...   178   1e-43
UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubr...   178   1e-43
UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1...   178   1e-43
UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri...   178   1e-43
UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L...   177   2e-43
UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=...   177   2e-43
UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax...   177   2e-43
UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   177   2e-43
UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav...   177   2e-43
UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clost...   177   2e-43
UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur...   177   2e-43
UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass...   177   3e-43
UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida...   177   3e-43
UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para...   177   3e-43
UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51...   177   3e-43
UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot...   177   3e-43
UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI...   177   3e-43
UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D...   176   4e-43
UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam...   176   4e-43
UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ...   176   4e-43
UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flav...   176   4e-43
UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   176   5e-43
UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Euba...   176   5e-43
UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob...   176   6e-43
UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo...   176   6e-43
UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1...   175   6e-43
UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla...   175   7e-43
UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ...   175   1e-42
UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte...   175   1e-42
UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gamm...   175   1e-42
UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo...   175   1e-42
UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev...   175   1e-42
UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flex...   174   1e-42
UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chro...   174   2e-42
UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen...   174   2e-42
UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit...   174   2e-42
UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul...   174   2e-42
UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein...   174   2e-42
UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ...   174   2e-42
UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam...   174   2e-42
UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuring...   174   3e-42
UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidete...   173   4e-42
UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu...   173   5e-42
UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri...   172   5e-42
UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2...   172   5e-42
UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Prot...   172   5e-42
UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bac...   172   6e-42
UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synerg...   172   6e-42
UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thau...   172   6e-42
UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus Re...   172   6e-42
UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit...   172   7e-42
UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio cross...   172   7e-42
UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif...   172   7e-42
UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flav...   172   7e-42
UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robigin...   172   7e-42
UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme...   172   8e-42
UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob...   172   8e-42
UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bact...   172   9e-42
UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ...   172   1e-41
UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep...   171   1e-41
UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive...   171   1e-41
UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anap...   171   1e-41
UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu...   171   1e-41
UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Fl...   171   1e-41
UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi...   171   1e-41
UniRef50_C6RD51 Mature parasite-infected erythrocyte surface ant...   171   1e-41
UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor...   171   2e-41
UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ...   170   2e-41
UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase...   170   2e-41
UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Poly...   170   2e-41
UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit...   170   2e-41
UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cry...   170   3e-41
UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propion...   170   3e-41
UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther...   170   4e-41
UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit...   170   4e-41
UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos...   170   4e-41
UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alph...   169   4e-41
UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re...   169   6e-41
UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseu...   169   6e-41
UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ...   169   7e-41
UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capn...   169   7e-41
UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo...   169   8e-41
UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamm...   169   8e-41
UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface ant...   169   9e-41
UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel...   168   9e-41
UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ...   168   9e-41
UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri...   168   1e-40
UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Strep...   168   1e-40
UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit...   168   1e-40
UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-posit...   168   1e-40
UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon...   168   1e-40
UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re...   168   1e-40
UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Deth...   168   1e-40
UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria ...   168   1e-40
UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4...   168   2e-40
UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Cam...   167   2e-40
UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Nei...   167   2e-40
UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly...   167   3e-40
UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen...   167   3e-40
UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacte...   167   3e-40
UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Bur...   167   3e-40
UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acid...   167   3e-40
UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacteri...   167   3e-40
UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidob...   166   4e-40
UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob...   166   4e-40
UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge...   166   4e-40
UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict...   166   4e-40
UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchn...   166   5e-40
UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege...   166   5e-40
UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromon...   166   5e-40
UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo...   166   6e-40
UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins...   165   6e-40
UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolb...   165   7e-40
UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov...   165   8e-40
UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri...   165   8e-40
UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr...   165   8e-40
UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu...   165   9e-40
UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive...   165   9e-40
UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili...   165   1e-39
UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacte...   165   1e-39
UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla...   165   1e-39
UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri...   165   1e-39
UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit...   165   1e-39
UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ...   164   1e-39
UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=...   164   2e-39
UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosm...   164   2e-39
UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact...   164   2e-39
UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrog...   164   2e-39
UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax...   164   2e-39
UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid...   164   3e-39
UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0...   164   3e-39
UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop...   164   3e-39
UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T...   164   3e-39
UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphyloco...   164   3e-39
UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingell...   163   3e-39
UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Rose...   163   3e-39
UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobac...   163   3e-39
UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DS...   163   4e-39
UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halo...   163   4e-39
UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas...   163   5e-39
UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Pro...   162   5e-39
UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsi...   162   5e-39
UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria...   162   5e-39
UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta...   162   6e-39
UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydr...   162   7e-39
UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ...   162   7e-39

Sequences not found previously or not previously below threshold:

>UniRef50_P0AEK1 Exodeoxyribonuclease 10 n=100 Tax=Enterobacteriaceae
           RepID=EXOX_ECOL6
          Length = 220

 Score =  289 bits (740), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
           MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD
Sbjct: 1   MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60

Query: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120
           KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct: 61  KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT 120

Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180
           RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR 180

Query: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220
           GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct: 181 GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT 220


>UniRef50_A8GD51 Exonuclease RNase T and DNA polymerase III n=20
           Tax=Enterobacteriaceae RepID=A8GD51_SERP5
          Length = 222

 Score =  239 bits (611), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 131/216 (60%), Positives = 159/216 (73%), Gaps = 2/216 (0%)

Query: 4   IIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPW 63
           +IDTETCGL+GG+VE+ASVD+IDG+I NPMS L+ PDRPI  +AMAIH ITE MV  KP 
Sbjct: 5   VIDTETCGLEGGVVEVASVDLIDGQIANPMSDLISPDRPIGIEAMAIHHITEQMVEGKPR 64

Query: 64  IEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKTRKL 123
           I   I  Y GS +YVAHNA+FDR VLPEM G WICTMKLAR L+P IKY N  L     L
Sbjct: 65  IAVAIGRYQGSPYYVAHNAAFDRGVLPEMHGAWICTMKLARNLYPDIKYGNQYLRYALNL 124

Query: 124 NVQTPPGLH--HHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRG 181
           +VQ P       HRALYDCY+TAALL  I+  SGWT EQMA IT +P L+  F FGKYRG
Sbjct: 125 DVQLPQDTTLYPHRALYDCYVTAALLQRIIKDSGWTPEQMAQITDQPVLLKKFKFGKYRG 184

Query: 182 KAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           + +  VA+ DPGYLRW+  +++ +SP+++ TLK+YL
Sbjct: 185 QEIDRVAQEDPGYLRWMLKSIEDLSPDMKHTLKYYL 220


>UniRef50_A4W6Y1 DNA polymerase III, epsilon subunit n=7 Tax=Enterobacteriaceae
           RepID=A4W6Y1_ENT38
          Length = 223

 Score =  231 bits (590), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 107/221 (48%), Positives = 143/221 (64%), Gaps = 6/221 (2%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           MLR+IDTET GL+GG   +VE+ASVD++DG I NPMS LV+P   I  +AMAIH ITE M
Sbjct: 1   MLRVIDTETTGLEGGPETVVELASVDIVDGVICNPMSDLVKPGVAIGFEAMAIHHITEDM 60

Query: 58  VADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYS-NMA 116
           V   P + +VI  Y G++ YVAHNA FD+  LP++   WICT KLAR L P  K   N  
Sbjct: 61  VEGAPLLSEVIGRYLGADAYVAHNAKFDKSKLPQIDAPWICTAKLARSLLPEHKSHSNQY 120

Query: 117 LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTF 176
           L  +  L  + P GL+ HRALYDCY+TA LL+ +   + WT  +M  I+  PSL+    F
Sbjct: 121 LRYSLGLKPEVPEGLYAHRALYDCYVTAELLLYMGRLAKWTMGEMRAISNNPSLLNALRF 180

Query: 177 GKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           GK++G + +++A+ +PGYLRWL  N D    ++  T  H+L
Sbjct: 181 GKHKGVSFAELAKTEPGYLRWLVANSD--DEDVLFTAGHWL 219


>UniRef50_C8WWQ3 DNA polymerase III, epsilon subunit n=4 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWQ3_ALIAD
          Length = 240

 Score =  223 bits (570), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 82/232 (35%), Positives = 118/232 (50%), Gaps = 22/232 (9%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDV---IDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
             ++DTET GL  +G +VE+A V+V    + +IV   S LV P  PI P+A A+H IT+ 
Sbjct: 8   FVVVDTETTGLPPEGRVVELALVEVGLECEPQIV--YSALVDPGCPIPPEASAVHHITDR 65

Query: 57  MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI-KY 112
            VA KP +  V P    Y G    VAHNA FDR +LPE    WIC+ +LA+ LW    K+
Sbjct: 66  DVAGKPRLSQVWPKVLGYIGDAILVAHNAEFDRGMLPETGRPWICSKRLAQHLWRDAPKH 125

Query: 113 SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-----SGWTAEQMADITGR 167
           SN  L     ++V+       HRAL D  +TA +    +            +++      
Sbjct: 126 SNQVLRYWLGIDVEVG---QPHRALGDAIVTAHVFQRELRAYLEAGYPDDVDELIAFAES 182

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           P  + T  FGK++G  + +V      YL W   NL  +SP+LR +++  LE 
Sbjct: 183 PIEVQTMPFGKHKGMPLKEVP---LDYLDWALRNLQDLSPDLRWSMQRVLEQ 231


>UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN
          Length = 1401

 Score =  214 bits (545), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 18/206 (8%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V + + KIV+     V P  PIS     +  I E+MV
Sbjct: 388 FVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMV 447

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P IE+V+P +         VAHNA+FD   +          +    + T++L+R L+
Sbjct: 448 KDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENTVLDTLELSRHLY 507

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             +K   +               LHHHRA+ D   TA + I ++        +       
Sbjct: 508 QDLKNYKLDTLAEF----FEVKLLHHHRAVEDAKATAEIFIKMLEKLQEIGIKSVSEINS 563

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPG 193
             +       K     V+ + +   G
Sbjct: 564 VLMEREVDVKKLPVYHVTILVKDQKG 589


>UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus
           DSM 4252 RepID=D0MI24_RHOM4
          Length = 565

 Score =  212 bits (540), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%)

Query: 2   LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             ++DTET G      I+E+A+V V  G+IV   + L+ P R + P    +  IT AM+ 
Sbjct: 8   FVVVDTETTGSGPADRIIELAAVRVQGGRIVERFATLINPGRSVPPFITRLTGITTAMLV 67

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107
            +P  ++V+P    + G    VAHN +FDR++L                +CT++LARRL 
Sbjct: 68  GRPSADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQRIGLAWPGNPALCTLRLARRLL 127

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-----TAEQMA 162
           PG+    +             P  + HRAL D   TA +L+ ++  +       T E + 
Sbjct: 128 PGLPAKGLDGLIRFY----QIPVENRHRALGDAEATAHVLLRLLEEARRQYGIDTLEALL 183

Query: 163 DITGR--PSLMTTFTFGKYRGKAVSDVAERDPGYL 195
               +  P         + R   +  + E    YL
Sbjct: 184 TFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYL 218


>UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae
           RepID=DPO3_THEP1
          Length = 1367

 Score =  208 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 23/232 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V + DG+IV+    L++P R IS ++  I  IT+ M+
Sbjct: 358 FVVLDFETTGLDPQVDEIIEIGAVKIQDGQIVDEYHTLIKPSREISRRSSEITGITQEML 417

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            +K  IE+V+P + G   +   VAHNA+FD R L          +    +I T+ LA+ L
Sbjct: 418 ENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL 477

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                YS  ++ +   L         HHRAL D  +TA + +  +         +  ++ 
Sbjct: 478 LKMRSYSLDSVVEKLGLG-----PFRHHRALDDARVTAQVFLRFVEMMKKIG--ITKLSE 530

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
             +L  T  +   +    + + +   G L+ L+  +     +    +   L+
Sbjct: 531 IENLKDTIDYTALKPFHCTILVQNKKG-LKNLYKLVSDSYIKYFYGVPRILK 581


>UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT
          Length = 726

 Score =  208 bits (530), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +V V +G+IV+  S  V P   I    + +  IT+ MV
Sbjct: 422 FVVFDIETTGLNPHQDKITEIGAVKVRNGQIVDRFSAFVNPGVSIPSFIVKLTGITDDMV 481

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P +E V+     +      VAHNA+FD   + +        +   +I T++L R+++
Sbjct: 482 KDAPPVEQVLNEFMEFIQGSVLVAHNANFDVGFIKQNAKLMGEKVKNPYIDTLELCRKMF 541

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADIT 165
           P + +Y    + K  K+ ++     +HHRA+ D   TA + +  +N       + + DI 
Sbjct: 542 PELGRYKLNIVAKHLKIELE-----NHHRAVDDSMATAKIFMHCINILKEKGCKTIKDIQ 596

Query: 166 G 166
            
Sbjct: 597 N 597


>UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z9S3_9FIRM
          Length = 1474

 Score =  204 bits (521), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 20/210 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V +GKI++  S  V P+ PI  +   +  I + MV
Sbjct: 409 YVVFDLETTGFSAKSDKIIEIGAVKVENGKIIDRFSTFVNPEIPIPFRIEKLTSINDEMV 468

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D P IE+++P    +      VAHN+ FD   +               I T+ ++R L 
Sbjct: 469 IDAPKIEEILPQFMEFCKDSVMVAHNSDFDMSFIEANCKRQDLECDFTVIDTVAMSRYLI 528

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
            G+ +Y    + K   + +      HHHRA+ D   TA + + +            D   
Sbjct: 529 IGLGRYKLDNVAKALGIVLD-----HHHRAVDDAECTALIFLKLCKMLEGKGIDNLDELN 583

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
           R    +     K        + +   G + 
Sbjct: 584 RQGKQSKNLIDKLPAHHAIILVKNQVGRVN 613


>UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE
          Length = 1449

 Score =  203 bits (518), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + DG+IV+  S  V P   I  +   +  IT+ MV
Sbjct: 435 YVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMV 494

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P I++V+P    + G+   VAHNA+FD   + +        +    + T+ LAR L+
Sbjct: 495 NGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKTLKNPVMDTVPLARYLY 554

Query: 108 PGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P +K   + L  K   ++++     +HHRA+ D   TA +L           +     T 
Sbjct: 555 PDLKKVKLNLVAKHLGISLE-----NHHRAVDDAKATAEILKFSFKKMKEEMDIHDVKTL 609

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193
               ++     K     +  +A+   G
Sbjct: 610 NEKYLSNIDVKKLPLHHIIILAKNQTG 636


>UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H
           168 RepID=B8CW68_HALOH
          Length = 1397

 Score =  201 bits (512), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 30/233 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V V  GK+++  S  V+P   I  +   +  IT  MV
Sbjct: 385 FVVFDLETTGLNKFKNEIIEIGAVKVKSGKVIDEFSSFVKPGESIPNKITELTGITNEMV 444

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
           +  P IE V      +      VAHNA FD   L          ++    + T+ L+R L
Sbjct: 445 SRAPDIEGVIGDFLEFIDGSILVAHNADFDYGFLQVALKKTGQGDISYPVLDTLTLSRAL 504

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWTAEQMA 162
            P +    +                +HHRA+ D   T+ + I+ +    N    T   + 
Sbjct: 505 LPDLSNHKLNTLARH----LNVRLDNHHRAVEDARATSEIFINFLSNIKNEGIETVPGIN 560

Query: 163 DITGRPSLMT-----TFTFGKYRGKAVSDVAER-DPGYLRWLFNNLDSMSPEL 209
            ++ + +        T  F K + + + D+       +L + +     +   L
Sbjct: 561 RLSTKINWRELPTYHTVIFAKNK-QGLKDIYRLVSESHLNYFYRKPRILKSHL 612


>UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI.
           Incertae Sedis RepID=B0S1A9_FINM2
          Length = 1421

 Score =  200 bits (510), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +V ++D KIV+  + L+ P+ PI  +   +  IT  MV
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDNKIVDEFNQLINPEIPIPEKITELTSITNEMV 461

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D P I+ V+P +    G    +AHNA FD   + +   +        +I T+  AR L 
Sbjct: 462 KDMPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRTYIDTLAFARALE 521

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           P +K   +  L K   +N+      +HHRA  D   T  + I ++N    
Sbjct: 522 PHLKNHKLDTLTKKYNVNL-----FNHHRACDDARATGEVFICMVNNLEQ 566


>UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE
          Length = 1427

 Score =  199 bits (508), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 20/169 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + +GK+V+  S  V P+R I  + + +  I + MV
Sbjct: 413 YVVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMV 472

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P IE+V+P    +      VAHNA+FD   +               + T+ L + L+
Sbjct: 473 KDAPKIEEVLPKFIDFIEDSILVAHNANFDVSFIKKNCKDFGIHFNNPILDTIPLCKFLY 532

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           P +K   +  + K   +     P L+HHRA+ D   T  +L+       
Sbjct: 533 PELKRYKLNVVAKHLGI-----PLLNHHRAVEDAKTTGDILLKAFEDLK 576


>UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WWI2_ALIAD
          Length = 1440

 Score =  199 bits (506), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + DTET GL      ++EIA+V V  G+IV+  + L+ P+R + P+ + +  IT  MV
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAGQIVDTYATLIDPERSLDPKIVELTGITNEMV 486

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A +P + + +     +      VAHNA FD   L +              I T+ LAR L
Sbjct: 487 AGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEQPVIDTLALARVL 546

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQMA 162
           +PG K   +     +     +   ++HHRAL D   TA + + ++  +          M 
Sbjct: 547 YPGEKNYKLKTLTQK----FSVDLVNHHRALADSEATAKVFVHMLKDAKARGIHNLLDMN 602

Query: 163 DITGRPSLMTTFTF 176
            + G+  +     F
Sbjct: 603 HLRGQIDISRVRPF 616


>UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii
           ATCC 33406 RepID=Q11UG6_CYTH3
          Length = 449

 Score =  198 bits (505), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 22/202 (10%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  IID ET G       I+EIA       KI +    L+ P+R I     ++  I   M
Sbjct: 2   MYSIIDIETTGGHASGNRIIEIAIYKFDGEKITDTYQTLINPERRIPVFITSLTGIDTEM 61

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRL 106
           VAD P   DV      +     +VAHN +FD       L  +   +    +CT++L+R++
Sbjct: 62  VADAPVFADVAREITDFTRDSVFVAHNVNFDYTFVKKELQALNMPYNLPKLCTVRLSRKI 121

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163
           +PG+  YS   L  +  ++VQ     + HRA  D   T  LL  ++  +T G+  + +  
Sbjct: 122 FPGLPSYSLGNLCGSLGIDVQ-----NRHRAAGDAEATVRLLNKLLLNDTEGFIPKSLKK 176

Query: 164 ITGRPSLMTTFTFGKYRGKAVS 185
            +    L       ++     +
Sbjct: 177 NSKETLLPANLPREQFDALPET 198


>UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria
           RepID=C9S0C0_GEOSY
          Length = 1444

 Score =  198 bits (504), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A+V V DG+I++       P  P+S   M +  IT+ MV
Sbjct: 429 YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMV 488

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            D P  ++V+  +    G    VAHNASFD   L          ++    I T++LAR L
Sbjct: 489 KDAPKPDEVLARFVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIANPVIDTLELARFL 548

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           +P +K   +  L K   + +       HHRA+YD   T  LL+ ++  +  
Sbjct: 549 YPDLKNHRLNTLCKKFDIELT-----QHHRAIYDAEATGHLLMRLLKEAEE 594


>UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes
           RepID=Q67P96_SYMTH
          Length = 1475

 Score =  198 bits (504), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 23/207 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I+E+ +V    G+IV+     VRP +P+ P+   +  IT  M+
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGGEIVDSFQSFVRPTKPVPPEVQKLTNITPDML 513

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
              P   + +     + G    VAHNA FD   L          E     + T+ LAR +
Sbjct: 514 EGAPEAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANPVLDTLTLARAV 573

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
            P ++  ++A            P + HHRA  D    A +L+ ++  +    E +AD+  
Sbjct: 574 LPHMRSHSLAALTKE----LQVPLVDHHRADADAKTAAMVLMKLLERAEG-VETVADLN- 627

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193
              L       + R    + + +   G
Sbjct: 628 --RLTKGINVEQLRPYHTTVLVKTQAG 652


>UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae
           RepID=C7NEP7_LEPBD
          Length = 1459

 Score =  197 bits (503), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET G       I+EI +V +   +++   S  V P+ PI  +   +  IT+ M
Sbjct: 424 IYVVFDIETTGFDPFNDKIIEIGAVKMRGREVIGEFSEFVNPEIPIPQKITELTTITDEM 483

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106
           VA+   IE V+P +         VAHNA FD   + +   +         I T+ LAR L
Sbjct: 484 VANAEKIETVLPRFLEFCTGTTVVAHNAKFDVGFIKQKTIDQGLEYSPSVIDTLPLARTL 543

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADI 164
            P ++ Y    L K   + ++T     HHRA+ D   TA +    +N        ++ +I
Sbjct: 544 LPELRGYGLANLVKYFGITLET-----HHRAVDDAKATAEVFQKFLNMILSKGILKLIEI 598


>UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17
           Tax=Fusobacterium RepID=A5TTA5_FUSNP
          Length = 1454

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 21/171 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EI +V +  G+IV+  S L+ P RPI      I  IT+  V
Sbjct: 427 FVVFDIETTGLNSHTNEIIEIGAVKIKAGRIVDRYSQLINPGRPIPYHITEITSITDEQV 486

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A++P I++VI  +    G    VAHNA FD   +           +    I T+++AR L
Sbjct: 487 ANEPKIDEVIGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSSVIDTLQMARDL 546

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           +P + KY    L KT  L ++      HHRA+ D   TA + I  ++    
Sbjct: 547 FPDLKKYGLGDLNKTLGLALE-----KHHRAVDDSQATANMFIIFLDKYKE 592


>UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes
           RepID=C0FNH3_9FIRM
          Length = 228

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 29/204 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       ++EI++V V  GK+V   S LV P RPI   A  ++ I++ MV
Sbjct: 17  YVLFDLETTGTSCIYDEVIEISAVKVRSGKVVEEFSQLVNPKRPIPYAASMVNHISDEMV 76

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105
           A++P    V+P +    G +  V HN   FD + L          ++  +++ T+++A+ 
Sbjct: 77  ANEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLFQQKLTNDYVDTLRVAKL 136

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA------ 158
            +P  ++  +  L +   ++ +       HRAL DC +   +   +              
Sbjct: 137 CFPEWRHRRLSDLAEHYGISTRG-----AHRALTDCKMNQQVFEYLAKELEKMPAAKKQS 191

Query: 159 -EQMADITGRPSLMTTFTFGKYRG 181
            E++    G P       FG++ G
Sbjct: 192 KEKICPECGLPMKKRNGRFGEFWG 215


>UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
           ATCC 27560 RepID=A5Z7T3_9FIRM
          Length = 237

 Score =  194 bits (493), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 30/213 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G++     I+EI +V V DGK V+  S L+ P   +SP    +  IT+ M+
Sbjct: 5   YVCVDIETSGIRVKWDKIIEIGAVKVRDGKAVDTFSELINPGLKLSPYITELTGITDEML 64

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            DKP+IE+V+P +    G +  + HN  FD   L +             I T+K+AR+  
Sbjct: 65  KDKPFIEEVLPRFIEFAGDDVIMGHNIMFDYSFLKQNAINQKLKFDKMGIDTLKIARKTL 124

Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
            G++      L     +        +HHRA  D  +T+ L   +M   G         T 
Sbjct: 125 KGLESRGLEYLCNYYGIA-----DENHHRAFNDAEVTSKLYNVLMEKFG---------TE 170

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199
            P L   +    ++ K +  + +R   YL+ L 
Sbjct: 171 SPGLFEPYQLV-FKAKKMQPITDRQKKYLKDLM 202


>UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales
           RepID=A0QF17_MYCA1
          Length = 643

 Score =  194 bits (493), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 99/243 (40%), Gaps = 30/243 (12%)

Query: 2   LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52
             ++D ET G +           I EI +V V DG ++   + LV P R I PQ M +  
Sbjct: 40  FVVVDLETTGGRSTSTGETAPDAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTG 99

Query: 53  ITEAMVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWI 97
           IT AMV+D P I+ V+P +            VAHNA FD   L                +
Sbjct: 100 ITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVL 159

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-W 156
           CT++LARR+    +  ++ L    +L          HRAL D   T  +L  ++   G  
Sbjct: 160 CTVRLARRVLSREEAPSVRLASLARL--FAVTTQPTHRALDDARATVDVLHALIERVGNQ 217

Query: 157 TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHY 216
                AD+ G    +   T  + R + +++   R PG   +   + + +     + L+  
Sbjct: 218 GVHTYADLRG---YLPDVTPAQRRKRVLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRR 274

Query: 217 LEN 219
           +  
Sbjct: 275 VAQ 277


>UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
           RepID=Q1MZX4_9GAMM
          Length = 738

 Score =  193 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 20/171 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G    Q  + E+  V V++G+IV+    L+ P R I      +  I+  MV
Sbjct: 573 YVIVDVETTGGRKEQHRVTEVGMVKVLNGEIVDEWQSLINPMRHIPQSITRLTGISNEMV 632

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           ++ P  +DV   I  +     +VAHN +FD                   +CT++++R+  
Sbjct: 633 SNAPVFDDVADEIAEFCAGSVFVAHNVNFDYGFFRSEFERLGRRFHAPKLCTVQMSRKYL 692

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           PG   YS   L     ++++     +HHRAL D    A +   I      +
Sbjct: 693 PGHSSYSLGKLCAALDIDLE-----NHHRALDDAKAAAHVFRLIQEKRQTS 738


>UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis
           L1-82 RepID=C7GFC6_9FIRM
          Length = 226

 Score =  193 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 27/202 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      ++EI++V V +GKIV+  S LV P RPI   A +++ I++ MV
Sbjct: 17  YVLYDLETTGISSLYDEVIEISAVKVRNGKIVDEFSELVNPGRPIPYAASSVNNISDKMV 76

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHN-ASFDRRVLPE---------MPGEWICTMKLARR 105
            +    E V+P +    G +    HN A FD + L           +  ++I T+ +A+ 
Sbjct: 77  ENARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFLYRDCEKYFGQTLTNDYIDTLAIAKL 136

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-----WTAE 159
            +P  K+  +  L +   ++ +       HRAL DC +   +   +   SG      T E
Sbjct: 137 CFPEWKHRKLSDLAEHYGISTKG-----AHRALADCRMNQQVFELMAKESGGTSAKQTEE 191

Query: 160 QMADITGRPSLMTTFTFGKYRG 181
           ++    G         FG + G
Sbjct: 192 KICPRCGLALKKRNGRFGGFWG 213


>UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH
          Length = 939

 Score =  193 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 33/223 (14%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        I+EI  V +   +I++  +    P +PI P    +  I++  
Sbjct: 4   FVVIDLETTGHAPSKNDKIIEIGMVIIEGDEIIDTKTTFFNPGQPIPPFITNLTGISDDD 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           VAD P   +    I       + +AHN +FD   L           +  + + T++L+R 
Sbjct: 64  VADAPLFTEKALSIKSILEDSYIIAHNVNFDLGFLNAELKENGIDRLHNQVLDTVELSRI 123

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L+P    Y    L     L          HRAL D Y+TA L   +M+       +  + 
Sbjct: 124 LFPTAPGYKLSQLSDHFNLQHD-----DPHRALSDAYVTAKLFQKLMDKINQLPYETIE- 177

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207
                      + K  G  +SD+ E     L  L  ++D  S 
Sbjct: 178 ----------QWLKLEGAFISDIKEILLNRLDELAFSIDQDSA 210


>UniRef50_Q15TC4 DNA polymerase III, epsilon subunit n=1 Tax=Pseudoalteromonas
           atlantica T6c RepID=Q15TC4_PSEA6
          Length = 769

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI +V VID K+V+  S L+ P+R +      +  I+  MV
Sbjct: 604 YVVVDVETTGGCKPGHRITEIGAVKVIDSKVVDSWSSLINPERRVPHFITRLTGISNDMV 663

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P   +VI     +     +VAHN +FD                   +CT++  R+ +
Sbjct: 664 EDAPLFCEVIDDLEAFMQDCIFVAHNVNFDYGFFKLEYGRLERAFSMPKLCTVREMRKYY 723

Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           PG   YS   L K   L++      +HHRAL D    A LLI ++N    T 
Sbjct: 724 PGSPSYSLGKLSKEYGLSLD-----NHHRALCDAQAAAELLI-MVNEKKHTV 769


>UniRef50_C2KW36 Possible DNA-directed DNA polymerase III alpha subunit (Fragment)
           n=1 Tax=Oribacterium sinus F0268 RepID=C2KW36_9FIRM
          Length = 821

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 20/209 (9%)

Query: 3   RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            + D ET G       I+EI +V + +GKI++ M   V P  PI  +   +  I ++MV 
Sbjct: 519 VVFDLETTGFDPRVNHIIEIGAVKIENGKIIDRMDVFVNPGVPIPFRITQLTSIDDSMVM 578

Query: 60  DKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
           D   IE+V+P +         VAHNA FD   +               I T+ L+R L P
Sbjct: 579 DAKGIEEVLPQFLDFAKDAILVAHNADFDYHFVSTKAKALNIPFSAPVIDTVALSRLLLP 638

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            + ++    + K  K+ +     LHHHRA+ D   TA + +  +           +    
Sbjct: 639 RLNRFKLDTVAKELKIEL-----LHHHRAVDDAEATARIYLKELEILEQRGVSSLEEIDS 693

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
             +       K     +  +A+ D G + 
Sbjct: 694 LEVDQVGKVRKLPSYHIILLAKNDIGRIN 722


>UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111 RepID=C1YUT4_NOCDA
          Length = 595

 Score =  192 bits (490), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 83/218 (38%), Gaps = 33/218 (15%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I E+ +V V  G++V   + LV P  PI      +  IT++MV
Sbjct: 26  FVVLDLETTGTSASGSRITEVGAVRVRGGEVVGEFATLVNPGTPIPANITLLTGITQSMV 85

Query: 59  ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPEMPG---------EWICTMKLA 103
           A  P +E+V+P              VAHNA FD   L                + T++LA
Sbjct: 86  ASAPPMEEVLPRLLAFLDAEPDTVLVAHNAPFDTGFLKAACERHGTDWPGYPVVDTLRLA 145

Query: 104 RRLWP--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----T 157
           R +      +   +A            P   +HRAL D   T  +L  ++         +
Sbjct: 146 RAVLARGETRNHRLATLAAY----FGVPVAPNHRALEDARATVGVLHGLVERLRPMGVSS 201

Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
            E++  +T  P+        + R     D+ E    Y+
Sbjct: 202 VEELRAVTKPPTKAQ-----RSRRHLAEDLPEEPGVYV 234


>UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales
           RepID=C7GFY3_9FIRM
          Length = 697

 Score =  192 bits (490), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 20/210 (9%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V+ G+I    S  V P+ PI  +   +  I + MV
Sbjct: 475 YVVFDLETTGFSPDKNKIIEIGAVKVVHGEITERFSTFVNPEVPIPYRIEELTSIRDDMV 534

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D P IE ++P    + G    VAHNA FD   + +             I T+ LAR L 
Sbjct: 535 IDAPKIETILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIEKEFTIIDTVALARILL 594

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P + ++    + K   ++++     +HHRA+ D   TA + +  +        +  D   
Sbjct: 595 PQLNRFKLDTVAKALGVSLE-----NHHRAVDDAGCTAEIFVKFVKMLHDRGMETLDQVN 649

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
           +    +  T  K        +A  D G + 
Sbjct: 650 QMGQASPETIMKMNTYHAIILATNDIGRIN 679


>UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales
           RepID=Y2191_MYCTU
          Length = 645

 Score =  192 bits (489), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 26/216 (12%)

Query: 2   LRIIDTETCGLQ---------GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHR 52
             ++D ET G +           I EI +V V  G ++   + LV P   I PQ + +  
Sbjct: 43  FVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTG 102

Query: 53  ITEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTM 100
           IT AMV + P I+ V+P    + G    VAHNA FD   L                +CTM
Sbjct: 103 ITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTM 162

Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAE 159
           +LARR+    +  ++ L    +L          HRAL D   T  +L  ++   G     
Sbjct: 163 RLARRVLSRDEAPSVRLAALARL--FAVASNPTHRALDDARATVDVLHALIERVGNQGVH 220

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
             A++  R  L       + +      +  R   YL
Sbjct: 221 TYAEL--RSYLPNVTQAQRCKRVLAETLPHRPGVYL 254


>UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium
           amycolatum SK46 RepID=UPI000185C525
          Length = 529

 Score =  192 bits (488), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 23/235 (9%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI ++    GK +   S  + P   I     ++  IT A V
Sbjct: 23  FVVVDLETTGLKAKNDHIIEIGAIKTRGGKTIGTFSSFIDPGMEIPDHITSLTGITTADV 82

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRL 106
              P +  VI  +        +VAHNA FD   L +   +          + T+ LARR+
Sbjct: 83  ETAPQLGTVITQFLEFARGSVWVAHNAKFDIGFLRQACTDLGLDWPSPSVVDTLTLARRV 142

Query: 107 WPGIK--YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
               +     ++            P    HRAL D   T  +L  +M        ++   
Sbjct: 143 LDRSQVGSFKLSQLARY----VGSPNRPAHRALDDAIATVDVLHYLMERLA--VYEVQTA 196

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +       T        + ++D A   PG   +   N D +     L L+  L  
Sbjct: 197 SELVHYSPTVAPEVRAKRHLADGAPHTPGVYVFRSRNDDPLYIGTALDLRRRLLQ 251


>UniRef50_C9D3J4 Exodeoxyribonuclease 10 n=1 Tax=Silicibacter sp. TrichCH4B
           RepID=C9D3J4_9RHOB
          Length = 240

 Score =  192 bits (488), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 22/235 (9%)

Query: 1   MLRIIDTETCGL----QGGIVEIASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRIT 54
           ++R+ID ET G        ++E   VDV      IVNP   L +P  PI P  MA+H IT
Sbjct: 8   IIRVIDYETTGTQEDENAQVIEFGRVDVDLDTLGIVNPFRALAKPSEPIPPVTMAVHHIT 67

Query: 55  EAMVADKPWIEDVIPHYYGSE----WYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGI 110
           +  VAD P    V   ++       +  AHNA F++        +WICT K A  +WP  
Sbjct: 68  DTDVADAPPPGQVWQPFWDGCRSEDYVAAHNAKFEQYFHDGNGRKWICTYKSALVVWPDA 127

Query: 111 KYS-NMALYKTRKLNV-----QTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
               N AL     ++              HRAL D Y+TA +L++++     T E++  I
Sbjct: 128 PSHGNQALRYWLGIDNIHPSFDRDAAQPPHRALPDAYVTAHILLELLKH--KTPEELVQI 185

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +  P+L+TT  FGK++G   S+       YL W+ N    +  + + + +++L+ 
Sbjct: 186 SEYPALLTTLRFGKHKGMKYSEAPT---DYLDWIVNKS-DLDEDTKFSSRYWLKK 236


>UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ
          Length = 934

 Score =  191 bits (487), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 27/186 (14%)

Query: 2   LRIIDTETCGLQ-----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
             ++D ET G         I +IA+V V DG+I+   S  + P R I P    +  I E+
Sbjct: 5   YVVVDLETTGNSWKDGKDKITQIAAVVVEDGEILEIFSSFINPKREIPPFITELTGIDES 64

Query: 57  MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG---------EWICTMKLAR 104
           MV   P  +DV P          +VAHN  FD   L E              + T++LA+
Sbjct: 65  MVKQAPLFQDVAPMVVELLQGAAFVAHNVHFDWNFLTEELRQAGYTEIHCPKVDTVELAQ 124

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P    Y    L K  +L          HRA  D   TA L +  +N        T +
Sbjct: 125 ILLPTADSYKLRDLAKQHELEHD-----QPHRADSDALATAELFLQFLNEIEKLPLVTLQ 179

Query: 160 QMADIT 165
            + +++
Sbjct: 180 SLYELS 185


>UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=B4S124_ALTMD
          Length = 715

 Score =  191 bits (486), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 20/167 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI  V ++ GK V+    L+ P R I      +  I++ MV
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKLVGGKEVDRFQTLLNPQRRIPSSITRLTGISDDMV 602

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           AD P   +V   I  +     +VAHN +FD   + +             +CT++  RR  
Sbjct: 603 ADAPLFAEVADHIASFTEDAVFVAHNVNFDYGFIKQEFARLEQSFRRPKMCTVREMRRTH 662

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
           PG+  YS   L K   ++++      HHRAL D    A LL      
Sbjct: 663 PGLSSYSLANLTKHFHIDME-----QHHRALSDAKAAAELLKLAFEK 704


>UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus
           RepID=C7RGM9_ANAPD
          Length = 1365

 Score =  191 bits (486), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 24/194 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +  V  GKI    + LV P+  I  + + I  IT  MV
Sbjct: 349 FVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVIPEKIIEITGITNEMV 408

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D P IE+V+P    +      V  N  FD   + E            ++ T+ +AR L+
Sbjct: 409 KDCPTIEEVLPGFLDFCKDSILVGQNTDFDVGFVRENCHRMGLDFNPIYLDTLPMARALF 468

Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI----MNTSGWTAEQMA 162
             +K  S   + +  ++     P  +HHRA  D   TA + I +    M   G     + 
Sbjct: 469 SDMKKFSLDKIARKLEI-----PAFNHHRASDDARATAQIFIKMFKMIMEEDGINLSTIN 523

Query: 163 DITGRPSLMTTFTF 176
            +           F
Sbjct: 524 KLKSHWPKSKHEYF 537


>UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica
           ATCC 39073 RepID=Q2RJC1_MOOTA
          Length = 921

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EIA+V +  G I      LV P RPI P    +  I++AMV
Sbjct: 6   YVVLDVETTGLDPARDRIIEIAAVRLEGGNITRQFQTLVNPGRPIPPAIERLTGISDAMV 65

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG-----EWICTMKLARRLWPGI 110
            + P + +V+P     +     V HN +FD   L +  G       + T+ L+R L+P +
Sbjct: 66  REAPPLPEVLPGLLDLFRDAIPVGHNGTFDLAFLNQALGHGWHSPLLDTLALSRILFPCL 125

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
               +           T     HHRAL D   TA LL ++
Sbjct: 126 ASHRLDYMSKY----LTLEATGHHRALDDVLTTARLLENL 161


>UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus
           RepID=C5D3B0_GEOSW
          Length = 921

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             IID ET G        I+++  V + +GKIV+  S    P+R I P    +  ITE M
Sbjct: 5   FVIIDLETTGNVPKKGDRIIQLGMVVIENGKIVDRFSSFFNPERDIPPFVQQLTNITEQM 64

Query: 58  VADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105
           VAD P   +            ++VAHN SFD +          LP   G  I T++LAR 
Sbjct: 65  VADAPSFAEEAAKVADMLQQSYFVAHNVSFDLQFLQEELHMAGLPPFSGPTIDTVELARI 124

Query: 106 LWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++P    Y    L K   ++         H+A  D  +TA L I ++N        T + 
Sbjct: 125 VFPTAESYKLGDLAKQLHIDHD-----QPHQADSDAEVTAKLFIALLNRLRQLPFITLQH 179

Query: 161 MADIT 165
           +  ++
Sbjct: 180 LKRLS 184


>UniRef50_A3HRT4 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1
           RepID=A3HRT4_9SPHI
          Length = 456

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G       I EIA +     K++     L+ P++ I      +  I  +MV
Sbjct: 3   FAIVDIETTGGAASTCGITEIAILIHDGEKVIEEFESLINPEQDIPTYITGLTGIDNSMV 62

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           +D P  E++   +        +VAH+ +FD   +         E   + +CT++LAR++ 
Sbjct: 63  SDAPTFEELSDKLWDLLHGRVFVAHSVNFDYGFVRACFNAIGREFKVDKLCTVRLARKII 122

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA-EQMADIT 165
           PG+  YS   + +T+K+     P L  HRA+ D   TA L   ++     T  + +   +
Sbjct: 123 PGLSSYSLGRICETQKI-----PILARHRAMGDARATAILFDQMLKKDSQTVFQALKKNS 177

Query: 166 GRPSLMTTFTFGKYRGKA 183
           G   L   F   KYR   
Sbjct: 178 GEAFLPPNFPITKYRKIP 195


>UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria
           RepID=A9KMW9_CLOPH
          Length = 1527

 Score =  190 bits (484), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 20/209 (9%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            + D ET G       I+EI +V +  G IV+  S  + P+ PI      +  IT+ MV 
Sbjct: 498 VVFDIETTGFSSVKDKIIEIGAVKIQHGTIVDRFSTFINPEVPIPYHIQKLTSITDEMVI 557

Query: 60  DKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
               IE+++P +       + VAHNASFD   + +        +    + T+ LAR L  
Sbjct: 558 GSRTIEEILPEFLSFCEGCYLVAHNASFDIGFITKKAEFLNIPLTVTSVDTVGLARVLLN 617

Query: 109 GIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            +    +    K   ++++     +HHRA+ D   TA + +  +        +      R
Sbjct: 618 HLNNFKLDTVAKALSISLE-----NHHRAVDDAGCTAEIYLKFLEMLRERGIETLAQINR 672

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
              +T     K        + + D G + 
Sbjct: 673 AEEVTPDVIKKMPTYHAIILCQNDIGRVN 701


>UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales
           bacterium RepID=Q1EM31_9BACT
          Length = 1428

 Score =  190 bits (484), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 22/208 (10%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET GL      I+EI ++ +   +++   S  V+P++ +S    ++  ITE M
Sbjct: 417 LFLVFDLETTGLNPKEDEIIEIGAIKMKGSEVLGTYSTFVKPEKELSAMITSLTGITEDM 476

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-----EMPGEW----ICTMKLARR 105
           +++   I++V+P    +      VAHNASFD   +         G+W    I T+ LA+ 
Sbjct: 477 LSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHFGGDWEMPCIDTLALAKS 536

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           L+    YS   + K  KL         HHRA  D  +TA +L   +  +      + ++ 
Sbjct: 537 LFRSKSYSLDNVVKRLKLG-----HFDHHRAFEDAKVTAEVLKKFVQLAKKRG--VQNVN 589

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193
               L         +   +S +A+   G
Sbjct: 590 ELEKLRKNQNLDSLKPFHISILAKNKKG 617


>UniRef50_A3JBF5 Putative uncharacterized protein n=2 Tax=Marinobacter
           RepID=A3JBF5_9ALTE
          Length = 483

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 27/210 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G       I EI       G+ V     LV P   ISP    +  I+ AMV
Sbjct: 13  FAFLDLETTGGSVATDRITEIGIQFWRAGECVGQWQTLVNPKTRISPFIEQLTGISNAMV 72

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           AD P  ED+            +VAHNA FD   +             + +CT+KL+RRL+
Sbjct: 73  ADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAKVLCTVKLSRRLY 132

Query: 108 PGIKYSN-MALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164
           P  +  N  AL +   L       +  HRA+ D          ++   G    +  + ++
Sbjct: 133 PEFRRHNMDALIERHGL-----QQVQRHRAMGDVAAMLGFFEHVLAQQGEDTLETAICEL 187

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
             RPS+ +           + ++      Y
Sbjct: 188 LQRPSIPSHLPLD-----TLQELPRGPGVY 212


>UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales
           RepID=B8FYI4_DESHD
          Length = 1447

 Score =  190 bits (483), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 24/217 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI  + +  GKI++     V P++PI  + + +  IT+ MV
Sbjct: 424 YCVLDLETTGFSAATEKITEIGIMKIQGGKIIDQFGCFVNPEKPIPARVVEVTNITDDMV 483

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D   I+ V P    +      VAHNA FD   L              ++ T+ LA+ L+
Sbjct: 484 RDAETIDQVFPKILNFIEGSVLVAHNADFDMGFLKHNAKVLGYDFDYTYLDTLSLAKELF 543

Query: 108 PGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL---IDIMNTSGWTAEQMAD 163
           P  K Y    + K   + V+       HRAL D   T  +    +D++   G    +  D
Sbjct: 544 PDYKTYKLGRIAKNLGIKVEV-----AHRALDDVGTTVKVFNIMVDMLKERGVETLEDID 598

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
           +           + K +      +A+   G L+ L+ 
Sbjct: 599 LKAADEAARKDEYKKLKTYHAIILAKDYTG-LKNLYK 634


>UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM
          Length = 1010

 Score =  190 bits (483), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 22/171 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      ++EI++V V  G++    S LV P R I P A  ++ IT+ MV
Sbjct: 25  YVVFDLETTGISSKYDEVIEISAVKVEAGQVTGEFSTLVNPGRKIPPAASRVNGITDKMV 84

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE---------MPGEWICTMKLARR 105
           A      +V+  ++   G    V HN  SFD + L              +++ T+ LAR 
Sbjct: 85  AGALPFSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRKVPDNDYVDTLLLARA 144

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
             P + +  +  L +   ++ +       HRAL DC++   +   +   + 
Sbjct: 145 ALPELSHHRLVDLAEHYGISAKG-----AHRALNDCHMNQKVYGKLAEEAE 190


>UniRef50_A6EU25 DNA polymerase III, epsilon subunit n=2 Tax=Bacteroidetes
           RepID=A6EU25_9BACT
          Length = 472

 Score =  189 bits (482), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 21/209 (10%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             +ID ET G   QG + EI  + V + +IV+  S L+ P+  I     A+  IT+ MV 
Sbjct: 8   FTVIDVETTGGVGQGRMTEICIITVENMEIVDVWSSLINPEIYIPQHITALTGITDQMVT 67

Query: 60  DKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           D P   DV   I        +VAHN +FD   L +           + +CT++L+R+L P
Sbjct: 68  DAPRFCDVAAIIEEKTRDAIFVAHNVNFDYGFLKKEFDLIGASFSRKKLCTVRLSRKLIP 127

Query: 109 GIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMADITG 166
           G+  YS   L ++  +++     L  HRA  D   T  L + ++   S    E   +   
Sbjct: 128 GLPSYSLSKLCRSIGISL-----LDAHRAEADTRATTTLFLQLLEKDSVANFEVFLNFLN 182

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           + S   T           + +      YL
Sbjct: 183 KSSREATLPPHINTE-DFNRLPSTAGIYL 210


>UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1
           Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA
          Length = 754

 Score =  189 bits (482), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 26/215 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET GL       ++E+ +V+++DG+I      L  P  P+S +  AI  I+ AM
Sbjct: 544 FVVIDFETTGLSPNNGDRVIEVGAVEIVDGRIGRRFQSLANPGFPVSARITAITGISNAM 603

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106
           + D P + +VI     +      VAHNA FDRR L             E +CTM+L +R 
Sbjct: 604 LVDAPPLAEVIREVSAFIEGATLVAHNAGFDRRFLQAEMERLGLWDDREMLCTMRLGKRA 663

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           +PG+    +A L +   + +        HRAL D   TA L + +         +    T
Sbjct: 664 YPGLGSYKLAFLAEHAGVALPDAM----HRALADAMATAELFLVMREREACPPPE----T 715

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDP--GYLRWL 198
             P++             +   A R P  G+ RWL
Sbjct: 716 QPPAIAEPAADRAVLASTLPPTAPRQPASGWRRWL 750


>UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
           29149 RepID=A7B5W2_RUMGN
          Length = 219

 Score =  189 bits (481), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 22/197 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      I+EI++V V  G + +  S LV P R I  QA  ++ IT+ MV
Sbjct: 15  YTVFDLETTGISANMDDIIEISAVKVKGGIVQDTFSTLVNPGRHIPAQATKVNGITDQMV 74

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPEM---------PGEWICTMKLARR 105
           ++ P I + +  +    G +  V HN  SFD + +              ++I T+ +AR+
Sbjct: 75  SEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFIYREVEELFQETVSNDFIDTLYMARK 134

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
             P +K+  +  L +   ++ +       HRAL DC +      ++      +   +   
Sbjct: 135 CLPELKHHRLTDLAEHFGISSKG-----AHRALNDCVMNQKCFEEMAKLQKKSVVFVCPK 189

Query: 165 TGRPSLMTTFTFGKYRG 181
            G   +     +G++ G
Sbjct: 190 CGGEMIRRNGRYGEFWG 206


>UniRef50_C5SPM0 DNA polymerase III, epsilon subunit n=1 Tax=Asticcacaulis
           excentricus CB 48 RepID=C5SPM0_9CAUL
          Length = 717

 Score =  189 bits (481), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       + EI +V + +G+I++    L+ P+R I P    +  I+ AM
Sbjct: 544 VYTVVDIETTGGQSANERVTEIGAVKIRNGEIIDTWQSLINPERRIPPFITELTGISNAM 603

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           V D P   D+      +     +VAHN +FD   L               +CT+   RR 
Sbjct: 604 VRDAPRFADIADDFDAFLKGTVFVAHNVNFDYGFLSAEYRRLERPFRYPKMCTVASMRRH 663

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
           +PG+  Y    L +   + ++     +HHRAL D    A LL  I           
Sbjct: 664 FPGLAAYGLGPLSREFGIELK-----NHHRALSDAMAAAELLKLINERRLSPIRDW 714


>UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS
          Length = 1446

 Score =  189 bits (480), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 22/215 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+E+A+V + DG++V      + P+RP+S     +  IT  MV
Sbjct: 425 YVIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQLTSITNEMV 484

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
                  +V+     + G      HN SFD   L           +    I T++L+R L
Sbjct: 485 HGAKKEAEVLAMFKEFTGDAVLAGHNVSFDMGFLNAGYERNDIDLIDNPVIDTLELSRML 544

Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            P  K     +L K  K+N++     HHHRA  D   T  LL  +   +    + +    
Sbjct: 545 HPEYKNHKLDSLTKRYKINLE-----HHHRANADAESTGYLLYKLEKEAAENYDMVNVNQ 599

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
               +     + + R      +A+   G L+ LF 
Sbjct: 600 LNDRVGVGEFYKQARPAHAVLMAQTQAG-LKNLFK 633


>UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis
           DSM 15434 RepID=C0W351_9ACTO
          Length = 547

 Score =  188 bits (479), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 27/238 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI +V V  G++ + +S LV P R I  Q   +  IT AMV
Sbjct: 31  FVVVDLETTGAGPGSHTITEIGAVRVRGGQVEDELSTLVNPGRAIPAQITVLTGITNAMV 90

Query: 59  ADKPWIEDVIPHYY-------GSEWYVAHNASFDRRVLPEMPG---------EWICTMKL 102
           A  P + + +  +             VAHNA FD   L                + T+ L
Sbjct: 91  AGAPPVPEALERFLQWARLWEEETVLVAHNARFDVGHLRGAARALELDWHEPRVLDTLAL 150

Query: 103 ARRLW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
           ARR W    +    +A   +        P    HRAL D   T  +L   +   G     
Sbjct: 151 ARRAWTRSEVPNHRLATLASF----VGSPTRPTHRALDDARATVDVLHAALEVLGPLGVT 206

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
             +     +        + + +   D+      Y ++L      +     + L+  + 
Sbjct: 207 HLEDLATATDPVPAR-RRAKSRLAQDLPTSPGVY-QFLSAAGQVLYVGSAVDLRRRVR 262


>UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium
           kroppenstedtii DSM 44385 RepID=C4LI21_CORK4
          Length = 616

 Score =  188 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 38/251 (15%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V +  G+ ++  S  V P R I P    I  I++  V
Sbjct: 34  FVVVDLETTGLSAHEDRIIEIGAVKIHGGEEISRFSTFVDPGRLIPPLITNITGISDDDV 93

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
              P     +  +         VAHNA FD   L                +CT+ LAR +
Sbjct: 94  NGAPKEAQAVKDFLEFARGTVLVAHNARFDIGFLQAASMRAHITWPQPTHLCTLVLARTM 153

Query: 107 WPGI---KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMA 162
                   +   +L +              HRAL D   T  +   ++   G      + 
Sbjct: 154 LDRCAVGSFKLSSLARHFH-----ATTTPTHRALDDALATVTVFHGLLEELGSHDIIHVG 208

Query: 163 DITGRPSL--------------MTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
           DI  RPS                T+ +    R + + +     PG   +  ++ + +   
Sbjct: 209 DIPTRPSRGAAGASVFQVPTPDATSISPSPNRYRRLIENVPSSPGVYIFRSHSGEPLYIG 268

Query: 209 LRLTLKHYLEN 219
             + L+  L  
Sbjct: 269 TAVNLRRRLRQ 279


>UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales
           RepID=A1SLE5_NOCSJ
          Length = 601

 Score =  188 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 85/240 (35%), Gaps = 34/240 (14%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I EI +V V  G+++     LV P   I      +  I+ +M
Sbjct: 30  FCVVDLETTGGSAEGGAMITEIGAVKVRGGEVLGEFQTLVNPRTEIPAFIAVLTGISNSM 89

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMP---------GEWICTMKLARR 105
           VAD P +E  +P +         VAHNA FD   L              E + T +LARR
Sbjct: 90  VADAPPVEAALPAFLEFAAGSVLVAHNAPFDVGFLRYFAEQQGRPWPGFEVVDTARLARR 149

Query: 106 LW--PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTA 158
           +            +L K             +HRAL D   T  +L  +M   G     T 
Sbjct: 150 VVSRDDAPNCKLSSLAKAFG-----STTTPNHRALSDARATVDVLHGLMERLGGVGVHTL 204

Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
           E++   + R S          R + +++     PG   +       +       L+  + 
Sbjct: 205 EELQTFSSRVSSAQR------RKRHLAEGLPHAPGVYLFRDEQAQVLYVGTSRDLRTRVR 258


>UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division
           WS3 bacterium RepID=Q2Z0D2_9BACT
          Length = 965

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 20/178 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G+      I+E+ +V V+DG++ +     V P  PI    + +  I++A V
Sbjct: 28  FVGLDLETTGVDSRVDRIIEVGAVRVVDGRVADTFESFVNPGCPIPSDIVHLTGISDADV 87

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMP----------GEWICTMKLARR 105
           A  P I++V+P    + G    VAH+A FD   L E            G    T+ L R 
Sbjct: 88  AGAPTIDEVLPRIIEFIGGSPIVAHHAPFDTGFLDEAAGGRPGLLVGRGGVFDTLPLTRA 147

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           L P +    +A            P    HRA  D    + L + ++         + D
Sbjct: 148 LLPRLPNHRLATAARF----FDIPTGRSHRATDDARAVSDLFLALLGVLDQIGATVLD 201


>UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=B0MME8_9FIRM
          Length = 1605

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 22/174 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + + D ET GL      I EI +V + + +IV   S  V P  PI      +  IT+ MV
Sbjct: 591 IIVFDIETTGLHPANERITEIGAVKLRNMEIVERFSTFVNPMMPIPSNITELTGITDDMV 650

Query: 59  ADKPWIEDV----IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           AD P  EDV       + G+    AHNA FD   +               + T+ +A+  
Sbjct: 651 ADAPT-EDVAVSDFMAFCGNSPVCAHNAKFDVSFIRSAAARMEKSFDNPVVDTLSIAKAA 709

Query: 107 WPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
             GIK   +    K  KL         HHRA+ D  +   + + I+N +  TA+
Sbjct: 710 LKGIKNYKLDTIAKYFKLG-----DFDHHRAVADAEMLCMIYMHIVNDTRKTAK 758


>UniRef50_B3E5V5 DNA-directed DNA polymerase n=1 Tax=Geobacter lovleyi SZ
           RepID=B3E5V5_GEOLS
          Length = 168

 Score =  187 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 16/166 (9%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++DTET GL     G ++EI +V V +G+I   ++ L+    PIS  A  +H I+E M
Sbjct: 4   VIVVDTETTGLSVRNQGRVIEIGAVAVENGQITAELATLINSGTPISYGAYRVHGISEQM 63

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           +A +P  ++V P    + G+   VAHNA+FDR  +          +   W CT++L+RR 
Sbjct: 64  LAGRPTPQEVWPWFLEFAGNSPLVAHNAAFDRAFINHELHLLGMSLANPWHCTVRLSRRK 123

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
            P +    +          + P  +  HRAL D  + A + ++++ 
Sbjct: 124 LPRLMNHKLETVYKHLFG-ELPEEVQRHRALDDARMAARVWVELLK 168


>UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD
          Length = 551

 Score =  187 bits (476), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 23/234 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L ++D ET G       I EI +V V  G+++      V P+RPI     ++  IT+A V
Sbjct: 21  LVVVDLETTGTDPAADAITEIGAVKVRGGEVLGEFRTFVDPERPIPAYIASLTGITDAAV 80

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A+ P I  V+P    + G    VAHNA FD   L                + T+ LAR +
Sbjct: 81  AEAPSIRTVLPMFLDFAGDAALVAHNARFDIGFLSAQAAACEITWPRPRVLDTLALARTV 140

Query: 107 W--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           +    ++   ++                 HRAL D   T  +L  I+   G +     + 
Sbjct: 141 FRRDEVRDHRLSTLARH----VGAGITPDHRALSDARATVDVLHAIIERLGPSGASTLED 196

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
            G        +  + R K +++     PG  ++L      +       ++  + 
Sbjct: 197 LGTA--HRRASPVQLRKKHLAEDVPPVPGVYQFLDAQGAVLYVGTSRNVRSRVR 248


>UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
           ATCC 17982 RepID=A7BDG4_9ACTO
          Length = 550

 Score =  187 bits (476), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 89/217 (41%), Gaps = 34/217 (15%)

Query: 3   RIIDTETCGLQG--GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
            ++D ET GL     I EI +V + DG +V+  S LV+P RPI P   ++  IT AMVAD
Sbjct: 30  VVVDLETTGLGAGADITEIGAVRIRDGAVVDEFSSLVKPSRPIPPFITSLTGITPAMVAD 89

Query: 61  KPWIEDVIPHYY--------GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLA 103
              I  V+ H+          S   VAHNASFD   L         P      + T+ LA
Sbjct: 90  AAPIASVLEHFLEWSGLGASDSPVLVAHNASFDVGFLRRAARACARPWPRVRIVDTLALA 149

Query: 104 RRLWPGI--KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWT- 157
           R   P    +   +    +          +  HRAL D   TA +    ID++  +G T 
Sbjct: 150 RLALPRPLVRNHKLGTVASY----FGTATVPEHRALGDARATAEILLGFIDLLAAAGATD 205

Query: 158 AEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
            E +  +T +       T        V+D+      Y
Sbjct: 206 VEDLIVLTDQAPARRPSTPD-----FVTDLPTSPGVY 237


>UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK
          Length = 942

 Score =  187 bits (475), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 84/234 (35%), Gaps = 33/234 (14%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        +++I +V V    I +  S  V P   I P    +  IT+  
Sbjct: 5   FVVIDLETTGNSPDQGAKMIQIGAVKVEGCTITDRFSTFVDPGCSIPPFITELTGITDKD 64

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP-EMPGEWI--------CTMKLARR 105
           V   P   ++      +      VAHN  FD+  L  ++  E +         T++L+R 
Sbjct: 65  VEGAPVFREIATDLLAFMEGSSLVAHNVPFDKGFLEAQLETEGLRLPKCCQFDTVELSRV 124

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHH-HRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L P  +   ++     +L+          HRA  D  ITA L I +++            
Sbjct: 125 LLPTQESYKLS-----ELSSSLDMDHDRPHRADSDAEITAELFIKLLHKLERLPLVTLQS 179

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPEL--RLTLKHY 216
             + +      +         DV  R     +W+  + D    +L  +L LK  
Sbjct: 180 LEQVAKGLKSDW---------DVLTRPLIQKKWMKVDEDEREYDLFRQLALKRV 224


>UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus
           moniliformis DSM 12112 RepID=D1AWZ0_STRM9
          Length = 1465

 Score =  187 bits (475), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 21/189 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V + +GK+++  S  V P   I  + + +  I + MV
Sbjct: 404 FVVFDIETTGFSPINDKIIEIGAVKLKNGKVLDRFSEFVNPQTIIPKKIVELTGINDNMV 463

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
            D   I+ V+P    +      VAHNA FD   + +   +        +I T++ ++ L 
Sbjct: 464 KDSDIIDKVMPRFLEFVKGTTLVAHNAKFDVGFISKKCEDLNLETDFSYIDTLEWSKILV 523

Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMADIT 165
             +K  +   L K   + ++     +HHRA+ D   TA L   +++       E++ D++
Sbjct: 524 DDVKRFNLDTLTKRFNIKLE-----NHHRAVDDANATAELFKKLLSLVSANGVEKLTDVS 578

Query: 166 GRPSLMTTF 174
            +       
Sbjct: 579 EKLEKKPKI 587


>UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1
           Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM
          Length = 1415

 Score =  186 bits (474), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 23/218 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I EI +V ++DG I    S L+ P   I  +   + RIT A+V
Sbjct: 401 YVVFDIETTGLSPIRDKITEIGAVKIVDGIITERFSQLINPQMLIPEKVQELTRITNALV 460

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            ++P IE+V P    +      VAHNA FD   +               + T+  AR   
Sbjct: 461 ENEPTIEEVAPKFYDFIKDSVLVAHNAKFDTAFIRRVFKENDLDFINPILDTLSFARATV 520

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
              K  N+A L K   +++     +  HRA+ D   TA L I ++N       +  D   
Sbjct: 521 KDTKKFNLATLCKKFGVSL-----VGAHRAVNDAEATAHLFIKLINKIFD--PKHIDFNK 573

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDS 204
             SL +          ++S + + + G L+ L+  +  
Sbjct: 574 LNSLKSQIEPEILFESSLSILTKNEEG-LKNLYKLVSD 610


>UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium
           RepID=A4YW65_BRASO
          Length = 737

 Score =  186 bits (473), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 65/161 (40%), Gaps = 20/161 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EI +V V + ++V     L+ P RPI  + + +  IT  MV
Sbjct: 563 YVVVDIETTGSWSSGDRITEIGAVKVRNHQLVEQWHSLINPQRPIPAKIVELTGITNQMV 622

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P   ++      + G   +VAHN +FD   L               +CT    RR +
Sbjct: 623 RDAPVFHEIADSFMAFMGDGIFVAHNVNFDYGFLSSEFERLERRFRFPKLCTCVGMRRRY 682

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           PG   Y    L     + +       HHRAL D    A LL
Sbjct: 683 PGHTSYGLGKLCAIYGIELD-----DHHRALCDARAAAHLL 718


>UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter
           hongkongensis HLHK9 RepID=C1DBV5_LARHH
          Length = 493

 Score =  186 bits (473), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 19/170 (11%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G    +  I EI  V+V  G +    S LV P +PI P    +  I++AMV
Sbjct: 6   YVIVDLETTGGHITRDRITEIGLVEVSHG-VTTRWSQLVNPGQPIPPFIEEMTGISDAMV 64

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           A+ P   ++ P        +  +AHNA FD   L             + +CT+KL+RRL+
Sbjct: 65  AEAPPFAELAPALLARLNGKLLIAHNARFDYGFLKNEFRRLGLTFTTDPLCTVKLSRRLY 124

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           P   K+S  +L     ++V   P    HRAL D       L   +   G 
Sbjct: 125 PQHAKHSLDSLIARHGIDV---PPGMRHRALGDAEAVYVFLQTAVAELGQ 171


>UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1
           RepID=C7RJN1_9PROT
          Length = 735

 Score =  186 bits (472), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET G++      I++I +V +++G+++       LV P+R I P+ + IH I++
Sbjct: 545 YTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFIRPEGIRIHGISD 604

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV  +P IE V+P    +      VAHNA+FD R L               + T+ L+ 
Sbjct: 605 DMVRGQPNIEVVLPALHDFCNDTVLVAHNAAFDMRFLQLKEERTGVAFSQPVLDTLLLSG 664

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            L P  +     ++ +   + ++       H AL D   TA + + ++            
Sbjct: 665 VLHPNQESHQLDSIAERLGIGIE-----DRHNALGDACATAEVFLKMLPLLAQMGITTLR 719

Query: 164 ITGRPSLMTTFTFGKY 179
                S  T F   KY
Sbjct: 720 QALEASEKTYFARVKY 735


>UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU
          Length = 1440

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 23/195 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL     GI E  +V + +G++++ +   V P + IS +   +  IT  MV
Sbjct: 403 YVSFDLETTGLSVIHDGITEFGAVKIKNGEVIDRLQMFVNPGKSISSRITNLTSITNDMV 462

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
            ++P I+ ++P    ++     VAHNA+FD   L         PE+    I ++ LAR +
Sbjct: 463 RNEPTIDALLPRIIEFFDDCILVAHNANFDIGFLNENLRRNNMPEITNPIIDSLALARAI 522

Query: 107 W-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT----SGWTAEQM 161
             P   Y    + ++ ++N         HRA YD  +   +   +++       +    +
Sbjct: 523 LKPMKSYRLGNVCRSYRVNYDDEV---AHRADYDAEVLGDVFNMMLHQIMQSGKYNLLDL 579

Query: 162 ADITGRPSLMTTFTF 176
            ++TG       + +
Sbjct: 580 CELTGDDVYKIVYPY 594


>UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus
           RepID=C6D2T0_PAESJ
          Length = 1437

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A V + +GK V+  S  + P   I      +  I + MV
Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREGKEVDRFSTFINPHEKIPYHIQQLTNINDEMV 480

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
            D P +E  +     + G    VAHNA FD   +         P++    + T++LAR L
Sbjct: 481 KDAPELEPKLREFIDFIGDSILVAHNARFDIGFIQANLKSIGMPDVTNPVLDTLELARFL 540

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
            P +K   +     +          +HHRA+ D      +L  ++N +  
Sbjct: 541 HPTMKNHRLNTLSAKY----KVSLDNHHRAVDDSVALGGVLFGLINDAAE 586


>UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales
           RepID=Q252U5_CHLFF
          Length = 249

 Score =  185 bits (471), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 28/236 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +   +D E  GL      I+E A+       +++ M  L+ PDR IS ++  IHRI++AM
Sbjct: 8   IFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPDRVISAESQRIHRISDAM 67

Query: 58  VADKPWIEDVIPH---YY-GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLA 103
           + D+P I +V P    +    ++ V H+  FD +VL +               I T++LA
Sbjct: 68  LKDQPRISEVFPKIQAFLKEGDYIVGHSVGFDLQVLTQEAERIGETFLSKYCIIDTLRLA 127

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           +        S  AL     +          HRA+ D  I   +          T EQ+  
Sbjct: 128 KEYGDSPNNSLEALAVHFNVPYDGN-----HRAMKDVEININIFKHFCKRF-RTIEQLKQ 181

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           +  +P  M     GK++G+  S++      YL+W   +      +L  +++H +++
Sbjct: 182 VLSKPIKMKYMPLGKHKGRCFSEIP---LSYLQW--ASKMDFDADLLFSIRHEIKH 232


>UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia
           acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA
          Length = 231

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 30/231 (12%)

Query: 6   DTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           DTET G++     ++E+A  D +  +       L+ P  PI P+A AIH IT+ MVA+ P
Sbjct: 7   DTETTGIKADRDYVIELAVYDPVGNR---TFERLINPGVPIPPEATAIHHITDEMVANAP 63

Query: 63  WIEDVIPHY----YGSEWYVAHNAS-FDRRVLPE---------MPGEWICTMKLARRLWP 108
              ++I  +     G    +AHN   FD   L            P +++ T+K ARR   
Sbjct: 64  SFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPPWKFLDTLKWARRYRN 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168
            +    +   +     +      + HRAL D  +   +   +++    +  +   +  +P
Sbjct: 124 DLPRHTLQFLR----GIYGIAENNAHRALDDVIVLHQVFSAMLDDL--SIAEAYALMNQP 177

Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             +    FGK++G  +  V      Y++WL        PE  L L+   E 
Sbjct: 178 KDIQHMPFGKHQGMPLKQVP---ASYIQWLAGTGAFEKPE-NLELRQCFEK 224


>UniRef50_C7PV18 DNA polymerase III, epsilon subunit n=3 Tax=Sphingobacteriales
           RepID=C7PV18_CHIPD
          Length = 456

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 27/211 (12%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G       I EIA        IV     L+ P  PI     ++  IT+ M
Sbjct: 1   MYAIVDIETTGGHASANGITEIAIYIYDGRNIVQQYETLINPGVPIPRYIQSLTGITDEM 60

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           VA+ P  ++V          + +VAHN +FD   +         ++  + +CT++L R++
Sbjct: 61  VANAPAFDEVAGDIFALLHDKIFVAHNVNFDYSFIQYHLAQAGYQLRTKKLCTVRLGRKI 120

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163
            PG+  YS   L K+ +++V        HRA  D   T  L   ++  +T    A  ++ 
Sbjct: 121 IPGLPSYSLGNLCKSLEISV-----TQRHRAAGDAAATVKLFGLLLQQDTGKAIAHALST 175

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
            +    L       +     V+ +      Y
Sbjct: 176 HSKEQFLPPNLPPEQ-----VTALPGTPGVY 201


>UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010
           RepID=C0N1K0_9GAMM
          Length = 488

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 22/190 (11%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET G +     + EIA ++V DG +V     L+ P RPI P    +  IT+A VA
Sbjct: 12  VILDCETTGGRASRDRLTEIALIEVEDGHVVKRWQTLLNPLRPIPPWITRLTGITDATVA 71

Query: 60  DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           D P  +++          +  VAHNA FD   L +        +  + +C++KL+R+L+P
Sbjct: 72  DAPTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCGYTLGNKTLCSVKLSRQLFP 131

Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA--DIT 165
             +      + +   L +      + HRA+ D  +  A    I      T  + A     
Sbjct: 132 EHRSHGLDRIIERLGLTID-----NRHRAMADTEVLLAFFEHISAQFPATTIRSACKQQL 186

Query: 166 GRPSLMTTFT 175
            RPS+ +  +
Sbjct: 187 KRPSIPSHVS 196


>UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae
           RepID=A7HNS3_FERNB
          Length = 1390

 Score =  184 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 25/233 (10%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EI +V   DGK+++     VRP++ ++ +++ I  ITE M+
Sbjct: 383 YVVLDLETTGLNPRSDEIMEIGAVKTRDGKVIDEFHTFVRPNK-LNKKSLNITGITEDML 441

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P I  V+P    +      VAHNA FD   L         E    +I T++L++ L 
Sbjct: 442 KDAPDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILSKSGIEFNPPYIDTLRLSQALL 501

Query: 108 PG--IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
                 +S   L     L         HHRAL D  +T  +   ++  +    + +    
Sbjct: 502 RNKIKSFSLDKLVDHFGLGA-----FQHHRALDDARVTVNVFWKLIELAKK--KSITTFE 554

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
               L+          + V+ +     G L+ L+  +     E    +   L+
Sbjct: 555 KLNKLVENINPLVKHPQHVTVLVRNKTG-LKNLYKLISKAHTETFFVVPQVLK 606


>UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI
          Length = 934

 Score =  184 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 24/185 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I++ A+V +  GKI++  S L+ P + I      +  + ++M
Sbjct: 5   YVVVDLETTGNSAKKGDKIIQFAAVVMEGGKIIDQYSSLLNPGKEIPAFIEELTGLNDSM 64

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           V+D P   ++ P         ++VAHN  FD   L E           G  I T++LAR 
Sbjct: 65  VSDAPVFAEIAPKVMELLEDAYFVAHNVLFDLSFLQEELLDAGFPGFYGPVIDTVELART 124

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161
           + P      ++    +    +       H+A  D Y TA LL   +         T +Q+
Sbjct: 125 VLPCSDSYKLSDLSAK----EGIMHDRPHQADSDAYATAKLLHIFLERLEELPLTTIKQL 180

Query: 162 ADITG 166
             ++G
Sbjct: 181 LKLSG 185


>UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB
          Length = 688

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 21/172 (12%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV+IA + +++G+I+       LV P RPI P +  +H I++
Sbjct: 494 FVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNPGRPIPPASTRVHHISD 553

Query: 56  AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104
            MV D P I +       +      VAHNA FD   L               +CT+ ++ 
Sbjct: 554 DMVQDAPDIIEAGRRFHDFCQGAVLVAHNAPFDLAFLRLKEKVIGRRFDNPVLCTVLMSA 613

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
            L+         AL +   + +   P    H A+ D   TA + + ++    
Sbjct: 614 GLFDHSGQHTLDALCERFGITI---PPEARHTAMGDTVATAEVFVRMLGLLQ 662


>UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton
           thalassium ATCC 35110 RepID=B3QSB2_CHLT3
          Length = 578

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 29/218 (13%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G    +  I+EI ++   +G+ V  +  LV P++ IS        IT +MV
Sbjct: 24  FAVVDLETTGGLKPENRIIEICAIKCRNGQEVGMLESLVNPEQQISYFISQYTGITNSMV 83

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P I+ ++     ++    +VAHN  FD   +          ++   W+CT +LARRL
Sbjct: 84  DNAPVIQSLLTKVSEFFQETIFVAHNVPFDMGFINMELERNGYAKLTNRWLCTFRLARRL 143

Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQ 160
            P   K +   L K   + V+     + HRA  DC  T  LL +++          TAE+
Sbjct: 144 LPTQQKKNLGDLAKYFGIIVE-----NRHRARGDCEATIKLLAELIILAQEQHGVETAEE 198

Query: 161 MADITGRPS---LMTTFTFGKYRGKAVSDVAERDPGYL 195
           +  +  +           F K R   ++    +   YL
Sbjct: 199 LLSLQFKAIRNFKREPRHFSKIRNTVLNKFPTKSGVYL 236


>UniRef50_Q3IIU0 Putative uncharacterized protein n=2 Tax=Alteromonadales
           RepID=Q3IIU0_PSEHT
          Length = 730

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 20/167 (11%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       I EI  V V  GK+++  + LV P R I     ++  I+++M
Sbjct: 566 IYSVVDLETTGALKGGNKITEIGLVKVQHGKVIDTWTTLVNPQRHIPGFITSLTGISDSM 625

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V++ P   D++           +VAHN +FD   + +             +CT+  +R+ 
Sbjct: 626 VSNAPVFADIVKPLMAKLAGSIFVAHNVNFDYGFIKKECEMAKVPFKMPKLCTVVESRKA 685

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           + G+K YS   L K   LN+ +     HHRAL D   TA LL+ I  
Sbjct: 686 FAGLKSYSLGNLSKHFNLNLTS-----HHRALADATATAQLLLLIQK 727


>UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
           ATCC 29799 RepID=A6P0N2_9BACE
          Length = 1390

 Score =  183 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 36/236 (15%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +   D ET GL      I+EI +V + +G+I       V P RP+S + + +  IT+ M+
Sbjct: 369 VVCFDIETTGLDNRRDVIIEIGAVILRNGEIAETFDTFVSPGRPLSREIVELTSITDKML 428

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLW 107
              P  E+ I     + G     AHNA FD   + E    +        I T+ LA+ L 
Sbjct: 429 EGAPSQEEAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTSIDTLILAQNLL 488

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAAL---LIDIMNTSGWTAEQMAD 163
           P + KY    + +  +L     P   HHRA  D  + A +      ++   G        
Sbjct: 489 PDLGKYKLDIVAEHLRL-----PPFKHHRADADAGMVAYMLVPFFKMLEDLG-------- 535

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           I    S+    T  + +GK     A R P +L  L  N   +     L  K +LE+
Sbjct: 536 IHTLQSINPEMTRLRVKGK-----ARRQPKHLIVLAKNNMGLRNLYTLISKAHLEH 586


>UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae
           RepID=C1DWW1_SULAA
          Length = 205

 Score =  183 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDR-PISPQAMAIHRITEAM 57
             I+D ET GL      I+EIA++ V  G +V+    LV+P    I      +  IT A+
Sbjct: 11  FLIVDLETTGLNPVNSEIIEIAALRVEGGIVVDKFHTLVKPSIGFIPTYITKLTGITNAL 70

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V DKP IE+V P +     +   VAHNA FD   L           +    +CT  LA+R
Sbjct: 71  VVDKPTIEEVFPQFLKFSENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLCTQNLAKR 130

Query: 106 LWPGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           L+P +   S + L     +     P    HRAL D  +T  L   I++
Sbjct: 131 LFPDLPSKSLVNLAYHFNI-----PYNKKHRALEDALVTYELFKKIID 173


>UniRef50_A0L3L4 DNA polymerase III, epsilon subunit n=1 Tax=Magnetococcus sp. MC-1
           RepID=A0L3L4_MAGSM
          Length = 237

 Score =  183 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++DTET G        I+EI  V++++ +  +     V P+R I   A  +H IT+A 
Sbjct: 4   LIVLDTETTGFDPKEGHRIIEIGCVELVNMRKGDERQWYVNPEREIPADATKVHGITDAD 63

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMP-----------GEWICTMKLA 103
           VA+ P  +++   +    G +  V HNA FD R L                  I T+ LA
Sbjct: 64  VANSPKFKEIYHEFLAFIGEDSLVIHNAEFDMRFLNAELTRLNKRLVMPMERAIDTIPLA 123

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           RR +PG   +  AL K   ++         H AL D ++ A + +++M  + ++ E  AD
Sbjct: 124 RRKFPGSTVNLDALCKRLGVDNSGRT---FHGALLDAHLLAEVYVELMGGNQFSLEMAAD 180

Query: 164 ITGRPSLMTTFT 175
            +GR +  +   
Sbjct: 181 ESGRIAQPSDSP 192


>UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales
           RepID=C7H779_9FIRM
          Length = 1417

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 2   LRIIDTETCGLQGGI---VEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + DTET GL  G+    EI +V V +G++V      V+P +PI+P+   +  IT  MV
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIVRNGEVVEEFDTFVKPGKPITPKITELTGITNEMV 456

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPE--------MPGEWICTMKLARRL 106
           AD P  ++ +  +         VAHNA +FD R L              +I T+ +A+ +
Sbjct: 457 ADAPGEKEALEAFLRFADGRILVAHNAHAFDIRFLKAAAKRSGISFEPTYIDTLTMAQAM 516

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           +PG+                  P    HRA  D      +   +++    
Sbjct: 517 YPGLHNYKQGTINKH----LELPSYEAHRACEDSAALGRIFCVMLSDLAE 562


>UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog
           protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE
          Length = 469

 Score =  182 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 23/208 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L +ID ET G       + EIA + +  G+IV     LV P+RPI      +  IT+ MV
Sbjct: 7   LVLIDVETTGANPVSDRVTEIAVLRIERGEIVGRWESLVNPERPIPALIQRLVGITDEMV 66

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A  P   ++            +VAHNA FD   +         +     +CT+KL+R L+
Sbjct: 67  AGAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVKLSRALY 126

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   ++   AL +              HRA+ D  +       +++   ++A+ +A    
Sbjct: 127 PEHHRHGLDALIERHGF-----TCGARHRAMGDTDVLWQ-FARLVS-GSFSADVLALACA 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           R   +     G   G A+  V +    Y
Sbjct: 180 RAMKLPARPPGLPEG-ALEGVPDAPGVY 206


>UniRef50_C1A497 DNA polymerase III epsilon subunit n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A497_GEMAT
          Length = 214

 Score =  182 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 23/183 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G +      I EIA V V  G++    S LV P+RPI P   ++  IT  M
Sbjct: 6   FAVVDVETTGTRAAGGDRITEIAIVQVQGGQVGEVYSQLVNPERPIPPYITSLTHITWDM 65

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V D+P   ++   +        +VAHNA FD R +          E+ G  +CT++ AR 
Sbjct: 66  VRDQPTFREITSNVLDRLRGSIFVAHNAPFDWRFVSEEVRRGSGQELSGPRLCTVRFARA 125

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMAD 163
             P + + S   + +   + +        HRA  D   TA  L  ++N  S    E    
Sbjct: 126 ALPQLSRRSLDHVTRYFGIEIAA-----RHRAAGDALATAHALCRMLNIASEHGVESWTA 180

Query: 164 ITG 166
           +  
Sbjct: 181 LQA 183


>UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus
           RepID=DING_BACSU
          Length = 931

 Score =  182 bits (463), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 26/187 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G        I++IA+V + +G+I    S  + P++ I      +  I+  M
Sbjct: 6   FVVIDVETTGNSPKKGDKIIQIAAVVIENGQITERFSKYINPNKSIPAFIEQLTGISNQM 65

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           V ++   E V           ++VAHN  FD   +              E + T++L+R 
Sbjct: 66  VENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAGFQLPDCEVLDTVELSRI 125

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++PG + Y    L +  +L          HRA  D  +T  + ++I+         T +Q
Sbjct: 126 VFPGFEGYKLTELSEELQLRHD-----QPHRADSDAEVTGLIFLEILEKLRQLPYPTLKQ 180

Query: 161 MADITGR 167
           +  ++  
Sbjct: 181 LRRLSQH 187


>UniRef50_A8H432 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria
           RepID=A8H432_SHEPA
          Length = 215

 Score =  182 bits (463), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL        +EI +V + DGK+V+    L+ P   IS    +   I+ AM
Sbjct: 18  VIVLDFETTGLSPTQGDRAIEIGAVMLKDGKVVDRFQQLMNPGFRISGFIESYTGISNAM 77

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106
           +AD P  E+V      + G    VAHNASFD+R L              + C+M +ARRL
Sbjct: 78  LADAPSCEEVMAQFADFIGDYNLVAHNASFDQRFLDAELKRINCHYLGQFACSMLIARRL 137

Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
           +       + +L   + +          HRAL D  +TA+L + ++       +
Sbjct: 138 YQAAPNHKLGSLVSYKNIQHDGVF----HRALADSEMTASLWLAMLEDLQQDYQ 187


>UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus
           RepID=Q81AF9_BACCR
          Length = 315

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET G       I+++A+V   + ++V+     V P+RPI  +  ++  IT   V
Sbjct: 10  YVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRV 69

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
           +D P IE+V+P    +  +   VAHNASFD R          LPE   + I T+ LA++ 
Sbjct: 70  SDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKY 129

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                   +   K           L  H A  DC   AA+             ++     
Sbjct: 130 MKHATNHKLETLKRM-----LGIRLSSHNAFDDCITCAAVYQKCAAIEEEGKRKV----N 180

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
           +  L  T  +     +AV ++   +   + WL
Sbjct: 181 KAMLDETAVY-----EAVKEILACNKRNVEWL 207


>UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM
           20469 RepID=C8WA42_ATOPD
          Length = 342

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 26/236 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      I+EIA++ V+DGKI    S L+ P R I   A AI+ IT  MV
Sbjct: 78  YVVVDLETTGLDVHYCEIIEIAALKVVDGKITEEFSSLIHPPREIPSGATAINHITNHMV 137

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHN-ASFDRRVLPEMPGE--------WICTMKLARRL 106
            + P ++ VIP    +      + HN   +D  VL E            W  T KLAR++
Sbjct: 138 KNAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDYVWYDTYKLARQI 197

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                Y  + + K   +          HRAL DCY+T  +   +   S  T E +  I  
Sbjct: 198 L-EPPYKLINIAKRLNV----KQHGKAHRALADCYMTYGIYEKMREISIATTENVKCIEK 252

Query: 167 RPSLMTTFTFGKYRGK--AVSDVAERDP--GYLRWLFNNLDSMSPELRLTLKHYLE 218
                T  T  K  G    ++ V    P   +L+ L  N  ++S  + L   + ++
Sbjct: 253 YTDKNTEST--KLSGTVFCLTGVPCCMPKSDFLKMLITNGATLSERVTLKTNYLID 306


>UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c
           RepID=D1VLC1_9ACTO
          Length = 615

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 78/213 (36%), Gaps = 26/213 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I E  +V V  G++V   + LVR    I P    +  IT+AM+
Sbjct: 52  FVVFDLETTGTGPTTAEITEFGAVKVRGGEVVAEFATLVRASTGIPPLITVLTGITDAML 111

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
           A  P + +V+P    +      VAHNA FD   L                + T +LARR+
Sbjct: 112 ATAPPLAEVLPAFLEFIQGTVLVAHNAGFDLSFLKAACERVGYPVPTWEHLDTARLARRI 171

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMA 162
               +  N  L    +L          HRAL D   T  +L  +    G     T E + 
Sbjct: 172 VTRDESPNNKLSSLARLFRARTEPC--HRALADARATVDVLHGLFERLGNLGVTTLEDVH 229

Query: 163 DITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
             + R S        + +     D+      Y+
Sbjct: 230 AYSARVS-----PAQRRKRVLADDLPTGPGVYI 257


>UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1
           RepID=A9DMS8_9FLAO
          Length = 457

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 81/205 (39%), Gaps = 19/205 (9%)

Query: 2   LRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
             IID ET G    I EI+        IV+  + LV P+  I     A+  I  AMVAD 
Sbjct: 7   YTIIDVETTGRSNKITEISIFKFDGETIVDEFTSLVNPNVLIPTHITALTGIDNAMVADA 66

Query: 62  PWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWPGI 110
           P   ++            +VAHN +FD  V+         +   + +CT++L+R L PG 
Sbjct: 67  PTFAEIAKEVLSITKDSIFVAHNVNFDYNVIRNEFKAIDLDFRRKKLCTVRLSRALIPGF 126

Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169
           K YS   L K+  +++        HRA  D   T  L   ++ T    AE       R S
Sbjct: 127 KSYSLGKLCKSLNIHIS-----DRHRARGDAAATVILFQLLL-TKDAAAETFQKFLKRES 180

Query: 170 LMTTFTFGKYRGKAVSDVAERDPGY 194
              T        K   D+  +   Y
Sbjct: 181 KEATLPPH-LPSKIFDDLPAKPGIY 204


>UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular
           protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR
          Length = 532

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 24/209 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  +D ET G       I EI  V+V    IV     L+ P   I P    +  I++ MV
Sbjct: 33  IVFVDLETTGADAQRDRITEIGVVEVGPDGIVE-WETLLDPGMSIPPFIQRMTGISDDMV 91

Query: 59  ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P  E   + +        +VAHNA FD   L             + +CT++L+R L+
Sbjct: 92  RGQPTFESLAESLAERLQGRLFVAHNARFDYGFLKNAFRRAGVTFRADVLCTVRLSRSLF 151

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   ++   AL     L          HRAL D  +       I  T      ++ +   
Sbjct: 152 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHATYSV---ELVEAAV 203

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           R  +            A+ DV      Y+
Sbjct: 204 RTLVRRASLPAGLEETALEDVPASPGVYI 232


>UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95
           RepID=A9BIM3_PETMO
          Length = 1388

 Score =  181 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 25/215 (11%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL+     I+EI +V + + KIV+    LV+P +P+S        IT  M+
Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKIKNMKIVSKFHRLVKPRKPVSNFTSNFTGITNQML 441

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
             +  IE+V+P +         VAHNA FD R +               +I T+ L++ L
Sbjct: 442 EVEKPIEEVLPQFLSFIEGAVLVAHNAIFDYRFIREWVRRVYNEHFEQTYIDTVALSKSL 501

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN-TSGWTAEQMADIT 165
                Y    + +  KL         HHRA  D  ITA + + ++        E ++D+ 
Sbjct: 502 LTLKSYGLAKVVEELKLG-----SFEHHRAHEDANITALVFLKLIEMAKSQNVEMLSDLE 556

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
               L     F + +    + + +   G L+ L+ 
Sbjct: 557 K---LKKFIDFKRIQPNDTTILVKNKTG-LKNLYK 587


>UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14
           Tax=Actinomycetales RepID=D1BFZ9_SANKS
          Length = 616

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 25/223 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G      GI EI +V V  G+++     LV P  P+      +  IT  MV
Sbjct: 62  FVVVDLETTGGSSKDAGITEIGAVKVRGGEVIGEFQSLVNPGHPVPAFIARLTGITTLMV 121

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           +  P IE V+P +         VAHNA FD   L              + + T+ LARR+
Sbjct: 122 SSAPSIELVLPSFLEFARGTVLVAHNAPFDISFLKAAARSMDLAWPGNQVLDTVPLARRV 181

Query: 107 W--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTAEQMAD 163
                     +                  HRAL D   T  ++  + +  +      + D
Sbjct: 182 VTRDEAPNHKLGTLAAL----FRATITPDHRALSDARATVDVMHALFDRMAPLGITHLED 237

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206
           +    +          R + ++D     PG   ++    + + 
Sbjct: 238 L---ATATDPVPADVRRRRHLADGMPSGPGVYMFVGPQDEVLY 277


>UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms
           RepID=Q1LGD6_RALME
          Length = 530

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  +D ET G       I EI  V+V    I      LV P   I P    +  IT+ MV
Sbjct: 35  IVFVDLETTGADAQRDRITEIGVVEVGPDGIQE-WDTLVDPLTSIPPFVQGLTGITDEMV 93

Query: 59  ADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P      + +        +VAHNA FD   L             + +CT++L+R L+
Sbjct: 94  RGQPTFALIAEALAEKLQGRLFVAHNARFDYGFLKNEFRRAGVTFRADVLCTLRLSRSLF 153

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ--MADI 164
           P   ++   AL     L          HRAL D  +       I         +  +  +
Sbjct: 154 PSVERHGLDALIARFGL-----TPKGRHRALADAELLWQFWQKIHEIYSVDLVESAVTSL 208

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL 213
               SL            A+ DV +R   YL +     D +   +  ++
Sbjct: 209 VKHASLPAGL-----EEAALDDVPDRPGVYLFY---GDDDVPLYVGKSI 249


>UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria
           RepID=Q21VB4_RHOFD
          Length = 476

 Score =  180 bits (458), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 23/209 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G       I EIA+V + +G+ V   S LV P   ISP    +  I+ AMV
Sbjct: 5   YVLLDLETTGGNPVHDRITEIAAVRIENGQEVARWSTLVNPGCSISPFIQHLTGISNAMV 64

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
              P  E V   +         VAHN  FD   L          +  + +CT++L+R L+
Sbjct: 65  RGAPGFETVAQHLLALLDGAVLVAHNVRFDHGFLLNELARLDVALRVKTLCTVRLSRLLY 124

Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P  K     A+ +   +       L  HRA+ D  +  A L       G        +  
Sbjct: 125 PQHKGHGLDAIMQRHGI-----RTLERHRAMGDVEVMQAWLQIARQEHGAELLGQQALAL 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
             S  T     + R   V+D+ E    Y+
Sbjct: 180 LQSSATLPPQLETR---VADIPESVGVYI 205


>UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38
           Tax=Enterococcus RepID=C2JLR4_ENTFA
          Length = 929

 Score =  180 bits (458), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 25/214 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       I++   V V DGKI+   +  V P++ +  Q  ++  I+   
Sbjct: 12  VYAVVDLETTGTDPTSDRIIQFGCVLVQDGKIIANFATDVNPNQVVPKQIQSLTGISNTQ 71

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V   P+ EDV   I HY     +VAHN  FD   L         P +    I T++LA+ 
Sbjct: 72  VQKAPYFEDVAHTIYHYLEDTIFVAHNVHFDYNFLARELVRCGTPPLTIPAIDTVELAQI 131

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
             P  K   +  L ++  L+ +     + H+A  D  +TA LL+ I          T E+
Sbjct: 132 FLPTEKSFRLSDLSESLGLSHE-----NPHQADSDAQVTAELLLLIQEKMKSLPLVTMEK 186

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           +A+++ + +  T+    +   +    V   +P Y
Sbjct: 187 IAELSQQTARETSAFIQQTYEQMKKQVTPLNPAY 220


>UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2
           Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5
          Length = 441

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 35/237 (14%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL   +  I+EIA+    + +I++  + LV P+  I P    I+ I   MV
Sbjct: 131 FVVVDLETTGLEPTRDYIIEIAAAKYENNEIIDTYTTLVNPEVFIPPNITNINHIDNDMV 190

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            D P I++V+P   ++ G    VAHNA FD + L          +    I T+ ++R+L+
Sbjct: 191 KDCPEIKEVLPGFMNFIGQLPLVAHNAPFDIKFLNANLALLGLYLNNPIIDTLPISRKLF 250

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             I+   +   K   LN+        HRAL DCY+   + ++  +T     + +A+I   
Sbjct: 251 SEIENHKLGTIKEY-LNIDV---QDSHRALPDCYVCGQIYLEY-STKEKNKKALANI--- 302

Query: 168 PSLMTTFTFGKYRGKAVSDVAE------RDPGYLRWLFNN----LDSMSPELRLTLK 214
                    G  + +  S V E      +D  Y+R+ F +    + +    LRL LK
Sbjct: 303 ---KLHSDIGLNKEECYSIVKEILKKHNKDLTYVRYGFTSNYFDIRAFYNFLRLKLK 356


>UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BAS5_PARDP
          Length = 659

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 20/195 (10%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIV-NPMSHLVRPDRPISPQAMAIHRITEAMV 58
            + DTET GL      IV+IA + +  G++       LV P RPI P + A+H IT+AMV
Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPGRPIPPASTAVHGITDAMV 513

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A  P +   +     +      VAHNA FD   L             + + T+ L+  LW
Sbjct: 514 AGAPDMTAALTAFHHFAEDTVLVAHNAPFDMGFLRRAVPETGAHFDNQVLDTVLLSAMLW 573

Query: 108 -PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMADIT 165
                +S  AL +   + +   P    H A+ D   TA   + ++        ++  D+ 
Sbjct: 574 GQSAPHSLDALTERLGIVI---PPEARHTAMGDARATAEAYLRLIAALEAKGLDRFEDVL 630

Query: 166 GRPSLMTTFTFGKYR 180
                         +
Sbjct: 631 AEARRHRRLVDDANK 645


>UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma
           RepID=Q2NJG3_AYWBP
          Length = 1572

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 90/219 (41%), Gaps = 38/219 (17%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+EIA + + +G  +      + P + ++     I  IT+ M+
Sbjct: 481 YVVFDLETTGLSNVRDKIIEIAGIKIKNGNKIGEFQKFIDPQQKLTKTITNITNITDEML 540

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
             +  I+ V+P +         VAHNASFD   L E          P   I TM L++R 
Sbjct: 541 QGQQTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKEKAKELKISLEPKPIIDTMALSQRY 600

Query: 107 WPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           +   +KY S   L    K+ ++      HHRAL D   T+ + I +++       Q+AD 
Sbjct: 601 FSNLLKYFSLKRLATVFKVKLE-----DHHRALADATATSEIFIKMID-------QLADP 648

Query: 165 TGRPSLMTTFTFGKYRGK---------AVSDVAERDPGY 194
           T  P       F + + K          ++ +     GY
Sbjct: 649 TKDPKNEQVINFFELQEKIDHKYERPYHINILVANQTGY 687


>UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus
           coagulans 36D1 RepID=C1PF24_BACCO
          Length = 930

 Score =  179 bits (456), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 30/231 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I++ ++V V   +I    +  V P++P+ P    +  I   M
Sbjct: 4   YVVVDLETTGNSAKKGDRIIQFSAVVVEGREIKTQFTSFVNPEKPVPPFISELTGIDNGM 63

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           + + P   ++ P          +VAHN  FD   L         P   G  + T++ +R 
Sbjct: 64  LEEAPVFSEIAPRIMEILEDSIFVAHNVLFDLPFLQQELKAAGFPPFRGPSLDTVEFSRI 123

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
            +P +  Y    L  +  L  + P     HRA  D ++TA LL+  M         T EQ
Sbjct: 124 AFPTLNSYKLGDLADSLSLYHERP-----HRADSDAFVTAKLLLACMEKCASLPVVTLEQ 178

Query: 161 MADITGRPSLMTTFTFG---KYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
           +  ++          F    + + + +  +      Y R +      + P+
Sbjct: 179 LVPLSYSLKNDLAGIFEDILEEKRRHIEHLPPDMEVY-RGIALKRKILPPD 228


>UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO
           RepID=UPI0001BCC2A4
          Length = 663

 Score =  179 bits (456), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E+A+V +  G ++      + P  P+S   + +  IT+ MV
Sbjct: 427 YVVFDVETTGLSAVYDTIIELAAVKMYKGNVIESFDEFIDPGHPLSRTTVDLTGITDGMV 486

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
                 E+V+     +      VAHNA+FD   L         PE     I T++LAR L
Sbjct: 487 RGSKSEEEVLRMFLEFSKDTILVAHNAAFDMGFLNTSYARYGIPEAANPVIDTLELARYL 546

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           +P  K   +  L K   ++++      HHRA+YD   T  L    +  +      +    
Sbjct: 547 YPQFKRFGLGVLSKKFGVSLE-----QHHRAIYDAEATGHLAWIFVKEAMDNHNMLYHDQ 601

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
               +    ++ + R   V+ +A+   G L+ LF 
Sbjct: 602 LNEHIGEGDSYKRARPFHVTILAKNQAG-LKDLFK 635


>UniRef50_C2FTR2 DNA polymerase III, epsilon subunit n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2FTR2_9SPHI
          Length = 469

 Score =  179 bits (456), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 25/218 (11%)

Query: 1   MLRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  I+D ET G      GI EIA       ++++    L+ P + I      +  IT  M
Sbjct: 12  IYAIVDIETTGGYAANSGITEIAIYLHDGHQVIDSYQTLINPHKEIPYHIQMLTGITPEM 71

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           + D P  EDV      +  ++ +VAHN +FD   +         +     +CT++LAR +
Sbjct: 72  LTDAPSFEDVAADIYSFLENKVFVAHNVNFDYSFIYAHLKACGYQWKSPKLCTVRLARNI 131

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-----AEQ 160
           + G   YS   L +   +     P    HRA  D   T  L   I++           + 
Sbjct: 132 FKGFSSYSLGNLCQRLDI-----PISDRHRAAGDAKATVILFERILSQDTDGLIDSFLQT 186

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWL 198
            A     P+ +    F +   K    + + + G + ++
Sbjct: 187 HAKEQLLPTHIDKMVFERLPAKPGIYIFKNNKGKIIYV 224


>UniRef50_Q895Z5 DNA polymerase III alpha subunit n=1 Tax=Clostridium tetani
           RepID=Q895Z5_CLOTE
          Length = 380

 Score =  179 bits (455), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET GL      I+EI ++    G+IV   + L+ P   I  +A  I+ IT  MV
Sbjct: 84  FVVIDLETTGLYPVTDKIIEITAIKYKSGQIVEKYNTLINPKINIPKRATEINNITNNMV 143

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            D P IEDV+P    +      VAHNASFD + L         E+    I T++L+R ++
Sbjct: 144 KDSPVIEDVLPELLKFIKEYPLVAHNASFDIKFLNANLALINREIKNVAIDTLQLSRAMY 203

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             +    +   K            + HRAL DC  TA + +D    +    ++  ++   
Sbjct: 204 TFLPNHKLTTIKEH----LCISEDNSHRALPDCITTAEIYLDYCYKANNNLKEFNELEKA 259

Query: 168 PSLMTTFTFGKY 179
              +      K 
Sbjct: 260 CFKVIKDMLNKN 271


>UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2
           RepID=UPI0000510268
          Length = 581

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 35/218 (16%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57
             I+D ET G    +  I EI +V    G+++     LV+P+   ISP    +  IT AM
Sbjct: 31  FVIVDLETTGTTAGKSEITEIGAVKTRGGEVLGEFQSLVKPEESVISPFVARLTGITHAM 90

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPGE---------WICTMKLARR 105
           V D P I  V+P +         VAHNA FD   +     +          + T+ L+RR
Sbjct: 91  VDDAPSIRSVLPSFLEFCVGAVLVAHNAPFDIGFIRSACEKLDYHWPQPTVLDTVTLSRR 150

Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
           +     ++   ++         +  P    HRAL D   T  +L  ++   G     T E
Sbjct: 151 VVSRDEVRNHKLSTLAAH-FGTEVSPD---HRALSDAKATGEVLHRVLERFGGYGITTLE 206

Query: 160 QMADITGRPSLMTTFTFGKYRGKA--VSDVAERDPGYL 195
           ++A +           + K + K+     V      Y+
Sbjct: 207 ELATV-------RQAGWAKRQAKSHLAKGVPAEPGVYM 237


>UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3
           Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB
          Length = 1411

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 22/214 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+EI +V + +G++++     + P  P+S   + +  IT+ MV
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKMKNGEVIDRFDKFINPHHPLSETTINLTSITDEMV 451

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
                   VI  +    G++    HN  FD   +         PE+    + T++++R L
Sbjct: 452 QAADDEAVVIKQFMDFYGNDPLCGHNVQFDVGFVDAALKRCGYPEISQPVVDTLEVSRLL 511

Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            P        +L +   + ++     HHHRA  D   T  L+  +++       +  D+ 
Sbjct: 512 HPEQSRHTLDSLCRKYNVALE-----HHHRANQDAEATGYLMFKLLDAFNDKYHE-DDLG 565

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLF 199
                     + + R   ++ +A+     LR L+
Sbjct: 566 KMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLY 599


>UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae
           RepID=C8NZK8_ERYRH
          Length = 1433

 Score =  179 bits (454), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+E   V + +G++V  M   ++   P+ P    +  IT+A +
Sbjct: 385 YVSFDLETTGLSNYYDHIIEFGGVLIENGRVVKKMQTFIKAPVPVRPFIQELTNITDADL 444

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
            + P IE+    I  + G    VAHNA FD   + E         +    I T+ L+R L
Sbjct: 445 VNAPSIEEAMDEILEFLGDHVLVAHNAQFDIDFIQETLRRIGKEPIQNAVIDTLDLSRAL 504

Query: 107 WPGIKYSNMALYKTR-KLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           +   +   +       ++          HRA YD  + + + ++++         M  I 
Sbjct: 505 FDNRRSYRLGSIARFMRIGYDEGV---AHRADYDAEVLSLVFLEMLRL--EQLSTMQTID 559

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193
              SL    +F K R    + +A+    
Sbjct: 560 DLQSLNNESSFKKLRKSHCTVIAKTQSS 587


>UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum
           reducens MI-1 RepID=A4J5B5_DESRM
          Length = 930

 Score =  179 bits (454), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 17/173 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL      I+EI  V ++DGK ++  S L+RP   +  +   +  I +  +
Sbjct: 4   FVALDLETSGLDCLQDEIIEIGLVKMVDGKEIDSFSTLIRPKGILPVKIKRLTGIKDHEL 63

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-----PEMPGEWICTMKLARRLWPGI 110
            D P +++V+P    +      V HN  FD   L       +      T++L++ L PG 
Sbjct: 64  QDAPKLQEVLPVILQFIADLPLVGHNVKFDYDFLSTAVQSPLANPLYDTLELSKYLMPGA 123

Query: 111 KYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA 162
               +  L     +++      + HRAL D    A LLI ++N       ++ 
Sbjct: 124 SNHRLGYLCSYLGIDI-----PNQHRALDDARGAAMLLIHLLNQCEEMEPELI 171


>UniRef50_UPI00016C5FA2 DNA polymerase III PolC n=1 Tax=Clostridium difficile QCD-76w55
           RepID=UPI00016C5FA2
          Length = 285

 Score =  179 bits (454), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 25/179 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET        G I+EI +V + +G+IV+  S LV P+  I  +   + +IT  M
Sbjct: 17  FVVVDIETTAFSIQKGGRILEIGAVKIKNGEIVDNFSTLVNPELKIPKKITELTKITNDM 76

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVLPEM--------PGEWICTMKLARR 105
           V D P+I +V+     +      VAHNASFD  R L             + + T+ L++ 
Sbjct: 77  VKDAPYIGNVLQKFNEFISDSVIVAHNASFDWDRFLKPALATIGIKSSHKVMDTVSLSKF 136

Query: 106 LWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            +P  K    + L    ++     P   +HRA+ D   TA   + +       AE++ D
Sbjct: 137 TFPDKKKHTLIDLCSYLEV-----PLEKNHRAIDDAIATAKCFLKL---KALNAEKLND 187


>UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae
           RepID=B0B7H7_CHLT2
          Length = 232

 Score =  178 bits (453), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 91/235 (38%), Gaps = 30/235 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L   DTET G Q     IVE+A+    +G        LV P+ PI  +A  IH IT A V
Sbjct: 4   LIFYDTETTGTQIDKDRIVELAA---YNGTTSESFQTLVNPEIPIPAEATKIHGITTAEV 60

Query: 59  ADKPWIEDVIPHYYG----SEWYVAHNAS-FDRRV---------LPEMPGEWICTMKLAR 104
           AD P   +    +          VAHN + FD  +         L E     I ++K A+
Sbjct: 61  ADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQLRTIDSLKWAK 120

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-AEQMAD 163
           +    +   ++   +     V        HRAL D      +   ++          + +
Sbjct: 121 KYRTDLPQHSLQYLR----QVYGFEENQAHRALDDVITLYRVFSALVGDLSPDQIYDLLN 176

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
            T  P +     FGKY+GK +S+V      Y+ WL      + PE    +K  +E
Sbjct: 177 ETCHPRIF-KMPFGKYKGKPLSEVP---SSYIAWLQKGDYLLQPE-NKEIKAAIE 226


>UniRef50_Q30T43 Exonuclease n=2 Tax=Campylobacterales RepID=Q30T43_SULDN
          Length = 234

 Score =  178 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 110/237 (46%), Gaps = 23/237 (9%)

Query: 1   MLRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           ML  +D ET GL+    I  I  + V +  I +    LV   + IS +A +I+ IT  M+
Sbjct: 1   MLIFLDVETTGLENGDKICSIGIICVSETAIFSKYE-LVNEGKKISSKASSINHITNEMI 59

Query: 59  ADKPWIE-----DVIPHYY-GSEWYVAHNASFDRRVLPE----MPGEWICTMKLARRLWP 108
            DKP  +     +++      S   +AHN +FD ++L +      G+ + T+++ + L P
Sbjct: 60  KDKPKFKDSKTWEILHENNNQSSTIIAHNVNFDLKMLLQSGFLWQGKVVDTLRVTKHLIP 119

Query: 109 G-IKYSNMALYKTRKL-------NVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
              ++S   L    KL         +    +  H AL D      L   ++       ++
Sbjct: 120 ECEEFSLQFLRYELKLYKDEKKEAAKYSAEISAHNALSDALHVKLLYEYLLEIKEH--DE 177

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           +  ++ +  L+  F FGKY+G+ + +++  D GYL W+  ++  +  +LR +++  L
Sbjct: 178 LVALSLKNVLIEKFNFGKYKGRYIEEISMCDRGYLEWMLLHVADLDEDLRYSIRGVL 234


>UniRef50_Q1ART4 DNA polymerase III, epsilon subunit n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1ART4_RUBXD
          Length = 560

 Score =  178 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I E+ ++ ++ G++V+  S LV P RPI P    +  IT+ MV
Sbjct: 33  YVVFDLETTGSSAREGGITELGALKLVRGRVVDRFSTLVNPGRPIEPFVARLTGITDEMV 92

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE------MPGEWICTMKLARRLWPG 109
           +  P   +VIP    +      VAHNA FD   L        +P   + T++LAR L PG
Sbjct: 93  SGAPPAREVIPRFEEFAEGSVLVAHNAGFDCSFLAAARGGRGLPNPVLDTLRLARLLVPG 152

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHR 135
           ++   ++      ++        +HR
Sbjct: 153 LRRYRLSAL----VSHFGVRQAPNHR 174


>UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus
           cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4
          Length = 922

 Score =  178 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 26/187 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G+       I++IA V +   KI++  +  V P R I P   ++  I +  
Sbjct: 4   FVIVDVETTGVSFIKGDRIIQIAFVVIEGKKIIDRFNSYVNPMRDIPPFIRSLTNINDNE 63

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           V D P  + V P         ++VAHN  FD   + E         + G  I T++L++ 
Sbjct: 64  VKDAPTFDLVAPRLLQALDGAFFVAHNVDFDLSFINEELHALGYTGLSGPVIDTVELSKI 123

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQ 160
            +P      ++ L ++  +N         HRA  D   TA + ++IM+        T  +
Sbjct: 124 AYPTADGFRLSQLSESLHMNHD-----QPHRADSDAEATALIFLEIMDKLYHLPKQTLIE 178

Query: 161 MADITGR 167
           + +++ +
Sbjct: 179 LNNLSTK 185


>UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales
           RepID=C0DA77_9CLOT
          Length = 255

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 82/213 (38%), Gaps = 28/213 (13%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL+     I EIA++ V+DG +      LV P RP+  + + +  IT+ M+
Sbjct: 16  YVAIDIETTGLEPRLDKITEIAALRVVDGAVEGRFVTLVNPGRPLGERIVELTGITDGML 75

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           A  P I DV   +  + G    + HN  FD   L             E I T+ L R   
Sbjct: 76  AGAPAIGDVIGPLVRFCGDLPLLGHNILFDYSFLKRAAVNQGLDFQREGIDTLNLCRAFM 135

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
           PG    N++              +  HRA  D      L   ++   G   E++   T +
Sbjct: 136 PGEHKKNLSAACAFY----CIEQVEAHRAEADALSAHLLYQKLLEGRGEGREEL--FTPK 189

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
             +        Y+ K    V +R   YL+ L  
Sbjct: 190 SLI--------YKAKKEQPVTKRQKEYLQDLIK 214


>UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA
          Length = 293

 Score =  177 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 21/238 (8%)

Query: 2   LRIIDTETCGLQ--GGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + I+DTET G +    I++++ + +  + +I      LV+P  PIS +AMA+H IT  MV
Sbjct: 3   IVILDTETTGNKEEDRIIQLSYLVLNENLEIEEIHDELVKPPLPISFEAMAVHHITNEMV 62

Query: 59  ADKPWIEDV-----IPHYYG-SEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWP 108
            DKP I+       +          V HNA FD  +L +       + I T ++ + L P
Sbjct: 63  EDKPLIKHTESYKRLKELNSPENLLVIHNAKFDLDMLKKEGFNSFFKLIDTFRVLKHLIP 122

Query: 109 GIKYSNMALYKTRK-------LNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
             K+S                +  +    ++ H AL D  +   L   ++       E++
Sbjct: 123 EGKFSLQYNRYALGLYKKEKDICEKYNIQINAHDALGDVIVLGLLFEYLVTNFEKNVEEL 182

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
            ++T +P L   F  GKY+ + + DV  +DP Y+ ++  +L  + P+++ +++H+LEN
Sbjct: 183 VELTTKPVLHDKFYQGKYKFEKIKDVLIKDPDYIEYML-SLTDLDPDVKYSIEHHLEN 239


>UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3
           Tax=Betaproteobacteria RepID=A1K872_AZOSB
          Length = 734

 Score =  177 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I +V V++GK +       L+ P RP+  ++  +H IT 
Sbjct: 544 YTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPCRPLPEESARVHGITA 603

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            M+A +P IE V+P    +      VAHNA+FD R L               + T+ L+ 
Sbjct: 604 DMLAGQPVIEAVLPSFHAFAADTVLVAHNAAFDMRFLQLKEDLTGLRFDQPVLDTLLLSA 663

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            + P      + A+ +   + V     +  H AL D  +TA + + ++        +   
Sbjct: 664 VIHPNQDSHRLEAIAERLGITV-----VGRHTALGDAMVTAEVFLKLVPLLAEKGIRTLR 718

Query: 164 ITGRPSLMTTFTFGKY 179
                +  + +   KY
Sbjct: 719 EAREAAEKSYYARIKY 734


>UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C36AB7
          Length = 264

 Score =  177 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G+      I+EI+++ V + + V   S LV P RPI   A  ++ IT+ MV
Sbjct: 58  YVVFDLETTGISAVKDDIIEISALKVKNHEQVETFSRLVNPRRPIPAGATKVNGITDEMV 117

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLPEMP---------GEWICTMKLARR 105
             +P +E ++P +      E  + HN  SFD   L              ++I T+ +AR 
Sbjct: 118 QSEPGLEFILPEFLDFIDGEILIGHNIQSFDLLFLNRAADEVCRKAVLNDFIDTLFMARA 177

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L PG+    +  L    K++ +       HRA  DC +       +          +   
Sbjct: 178 LLPGLSRHRLTDLADYFKISSEG-----AHRAFNDCVMNQICYEHMGKLLKDADIPVCPR 232

Query: 165 TGRPSLMTTFTFGKYRG 181
            G         FG + G
Sbjct: 233 CGGELTKRNGKFGPFYG 249


>UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4KA24_THASP
          Length = 769

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I+++ +  +++GK++       LV P+RP++P++  IH IT 
Sbjct: 579 YTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPERPLAPESAKIHGITS 638

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            M+  +P I+ V+P    +      +AHNA+FD R L               I T+ L+ 
Sbjct: 639 EMLRGQPTIDKVLPAFHAFAADTVLIAHNAAFDMRFLQLKEEQTGLRFDHPVIDTLLLSA 698

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            + P  +   + A+ +   L +     +  H AL D  +TA + + ++        +   
Sbjct: 699 VVHPNQESHRLEAIAERLGLTI-----VGRHTALGDAIVTAEVFLKLIPLLAEKGIRTLR 753

Query: 164 ITGRPSLMTTFTFGKY 179
                +  T +   KY
Sbjct: 754 DAREAAEKTYYARVKY 769


>UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales
           RepID=A4BWD8_9FLAO
          Length = 462

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G       I EI+++     KIV+  + LV P++ I     ++  IT AM
Sbjct: 2   LYAVVDIETTGNGPKGQKITEISALIFDGKKIVDEFTSLVNPEQNIPAFITSLTGITNAM 61

Query: 58  VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V + P   ++         +  +VAHN +FD  ++             + +CT++L R++
Sbjct: 62  VRNAPRFFEIAKKVAEITENTIFVAHNVNFDYNIIQAEFKSLGFDFKRKKLCTIRLTRKI 121

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            PG+  YS   +     +     P    HRA  D   TA LL  ++  
Sbjct: 122 IPGLPSYSLGNICTGENI-----PINGRHRAKGDAEATAELLRRLIER 164


>UniRef50_C5EVY5 DNA polymerase III subunit epsilon n=2 Tax=Clostridiales
           RepID=C5EVY5_9FIRM
          Length = 240

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 80/213 (37%), Gaps = 28/213 (13%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL+     I EIA++ V+DG I       V P R +      +  IT+ M+
Sbjct: 5   YIALDLETTGLEPKQEKITEIAALKVVDGVISQRYVTFVNPGRSLGAYITQLTGITDGML 64

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           AD P IE++I     + G    + HN  FD   L             E I T+ L R   
Sbjct: 65  ADAPPIEELIEDVVKFCGDLPLLGHNIRFDYSFLKHAAVNRRLEFEREGIDTLTLCRAFM 124

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            G    N++   +        P    HRA  D      L  ++M+  G     M D   +
Sbjct: 125 TGETRKNLSCACSY----FHVPQSTAHRAQADAEAAHLLYQELMSRHGQDQPSMFD--PK 178

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
           P +        Y+ K      +R   YL+ L  
Sbjct: 179 PLI--------YKAKRDQAATKRQKEYLQDLLK 203


>UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia
           RepID=A9AEP6_BURM1
          Length = 398

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 21/164 (12%)

Query: 2   LRIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G    +  I EI  V++     V+  + LV P +PI P    +  I++AMV
Sbjct: 38  LVFVDLETTGGTPAEHRITEIGVVEIGPLG-VSTWTTLVNPGQPIPPFIQQLTGISDAMV 96

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
            D P   ++ P        + +VAHNASFDR  L             + +CT++L+R L+
Sbjct: 97  RDAPSFAELAPALFERLDGKLFVAHNASFDRGFLRAEFERAGFAFNPDVLCTVRLSRALF 156

Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           P        AL     L          HRAL D  +       +
Sbjct: 157 PRESRHGLDALIARHGL-----VPAARHRALADADLLWQFWRHL 195


>UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified
           Erysipelotrichaceae RepID=A8RD59_9FIRM
          Length = 1447

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 22/207 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E     V D   +  +   ++P  PI    + +  I+E  V
Sbjct: 399 YCVFDLETTGLSSRFDHIIEFGGQIVKDRTCIKSLQLFIKPPVPIPAHIVELTGISEEHV 458

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            +     +       + G    VAHNA FD   L           +    I T+ LAR +
Sbjct: 459 RNAKSFAECADQILDFIGDSILVAHNADFDYNFLNSELVRIGRKPLDNPVIDTLDLARSM 518

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
                Y    + ++  +          HRA YD  + A   ++++N        + ++  
Sbjct: 519 QDRKGYRLGQIARSYGIRYDEDV---AHRADYDAEVLANTYMNMLNDLKH----IQNLAA 571

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPG 193
              +    +F K R K V+ + +   G
Sbjct: 572 LQDMQNARSFTKVRAKHVTILVKNAAG 598


>UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma
           mali AT RepID=B3R0M5_PHYMT
          Length = 1449

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+EIA++ + + +I++    L+ P + ++P    +  I+   +
Sbjct: 409 YVIFDFETTGLSKINDQIIEIAAIKIQNNQIIDEFQTLINPQQELTPFIENLTNISNQDL 468

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            ++P I  ++P +     +   +AHN SFD   L          ++   +I T+ LAR  
Sbjct: 469 KNQPLIATILPKFLKFCENSILIAHNISFDMGFLVNQTKKHLNLKLNLPFIDTLNLARYC 528

Query: 107 WP-GIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
               ++Y N+ +L K  K++ +     +HHRA+ D  IT  +   ++N
Sbjct: 529 LDSNLRYFNLKSLAKYFKISFE-----NHHRAMSDVLITKTIFQQLLN 571


>UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus
           denitrificans PD1222 RepID=A1BCD0_PARDP
          Length = 706

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 23/172 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I ++ +++GK++       LV P R I P+++  H I  
Sbjct: 516 YTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGREIPPESIPYHGIHP 575

Query: 56  AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV  +P I +V+P +         V HN +FD R L               + T+ LA 
Sbjct: 576 EMVQGQPRIAEVLPAFHAYASDTVLVGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLAS 635

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
              P        A+     + +        H AL D  +TA + + ++    
Sbjct: 636 IAQPHEPSHSLEAIAARLGVEIT-----QRHNALSDALVTAEVFLRLLPLLK 682


>UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA
          Length = 307

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 16/157 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++DTET GL      I+EI  + V + +IV+    L++P   +     A+  IT  M+
Sbjct: 22  YCVLDTETTGLSAYYDEIIEIGILRVRNNEIVDRYDQLIKPSIEVDGFITALTGITNDML 81

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP-----EMPGEWICTMKLARRLWPGI 110
            D P I  V   +  +   +  + HN SFD R L      ++  +++ TM+ AR+L+P +
Sbjct: 82  EDMPSISSVKNDVLSFISEDIILGHNTSFDMRFLNEGFKEQLSNQYMDTMQFARKLYPEL 141

Query: 111 KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
           K+  ++               + HRAL DC  T  L 
Sbjct: 142 KHHRLSDLTDY-----LGLHNNEHRALADCIATKELY 173


>UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria
           RepID=B1Y7R5_LEPCP
          Length = 731

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 23/196 (11%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       I++I +  +  GK+        LV P RPI P  + IH I  
Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP 600

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MVA +P I+ V+P    +      VAHNA+FD R L               + T+ L+ 
Sbjct: 601 DMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSA 660

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            + P  +   + A+ +   + V     +  H AL D  +TA + + ++        +   
Sbjct: 661 VVHPNQESHRLEAIAERFSITV-----VGRHTALGDAMVTAEVFVRLIPLLHAMGIETLG 715

Query: 164 ITGRPSLMTTFTFGKY 179
                +  T +   KY
Sbjct: 716 QAREAAQKTYYARLKY 731


>UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA
          Length = 412

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV IA V +++G+I+     + +V P RPI  +++  H IT+
Sbjct: 219 FVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPGRPIPAESIRYHGITD 278

Query: 56  AMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
            MV DKP    V+P +         VAHNA+FD + L               + TM L+ 
Sbjct: 279 DMVVDKPPAGVVLPQFRSYVADAVLVAHNAAFDLKFLRMREKDMGIRFDIPVLDTMILSN 338

Query: 105 RLW-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            L  P   +S   +     + +        H AL D  +TAA+L+  +        Q  D
Sbjct: 339 FLDGPDAGHSLDDICDRYGIEIT-----DRHTALGDAMVTAAVLLRQIEALEGRGIQTLD 393


>UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21
           RepID=C0WAB0_9FIRM
          Length = 225

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 24/167 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPD--RPISPQAMAIHRITEA 56
             +ID ET GL      I+EI +V V +G +       + P+  + +SP    +  IT++
Sbjct: 57  YVVIDIETTGLDVARSAIIEIGAVHVRNGAVSGRFQTFLTPEPYQSLSPFITNLTGITDS 116

Query: 57  MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            +   P   +++P    + G    V HN +FD   L           +   ++ T KLA+
Sbjct: 117 DLVGAPTFREILPRLRDFLGGYTLVGHNVNFDINFLYDRIYRETGEHLNNPYLDTKKLAK 176

Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
            + PG+  YS  AL K   +        +HHRA+ DC +T  +L  +
Sbjct: 177 TVVPGLSHYSLEALCKHFGIA------GNHHRAVDDCELTEKVLDAL 217


>UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales
           RepID=C4PPS2_CHLTJ
          Length = 250

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 29/235 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL      ++E A++     +I++ +  L+ P+R +S ++  IH+I++AM+
Sbjct: 9   FVCLDCETTGLDVKKDRVIEFAAIRFTFDEIIDSVEFLIHPERAVSAESQKIHKISDAML 68

Query: 59  ADKPWIEDVIPH----YYGSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103
            DKP   +V       +   +  V H+  FD +VL +                I T++LA
Sbjct: 69  RDKPKFGEVFSRIKGFFKERDHIVGHHVGFDLQVLSQESERLGETLLPKHHYVIDTLRLA 128

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           +        S  AL +   +     P   +HRA+ D  +   +   +      T  Q+  
Sbjct: 129 KEYGDSPNNSLEALARHFNV-----PHQGNHRAMKDVEMNVKVFKHLTKRF-RTLSQVTH 182

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
           I  +P  M     GKY+G+  +D+      YL W          +L  +++  ++
Sbjct: 183 ILSKPIKMKYMPLGKYKGRLFTDIP---LEYLLWALK--MDFDQDLLFSIRSEIK 232


>UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3
           Tax=Lactobacillus RepID=C2ES78_9LACO
          Length = 960

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 27/219 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I+++  V V DG+I+N     + P   +      +  I   
Sbjct: 24  IYSVVDLETTGTSVNHGDRIIQVGCVLVQDGEIINHFETKINPRVAVPRHITQLTGIKNN 83

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            V + P  ED+   +        +VAHN +FD   L         P +  + I T+ L++
Sbjct: 84  DVRNAPLFEDIAGTLYSLLSGTIFVAHNVNFDFPFLNAELERAGYPSLSIKAIDTVTLSQ 143

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P +K   +  L  +  +        H H A+ D   TA LL+D+M         T E
Sbjct: 144 ILMPTVKSYRLRDLTSSLSIEHD-----HPHSAVSDAEATAHLLVDLMKQLRELPTLTLE 198

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS-DVAERDPGYLRW 197
           ++ ++       TT    +   + V+  +   D  Y+  
Sbjct: 199 KLVELKLNLPQQTTMVLEQELERRVANPLPLDDSLYVSH 237


>UniRef50_A5FIG6 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacterium
           johnsoniae UW101 RepID=A5FIG6_FLAJ1
          Length = 459

 Score =  176 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 27/210 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I+D ET G       I EIA +      +++    LV P++ I P    +  I   MV
Sbjct: 6   YAIVDIETTGGNASGSRITEIAIIIHDGKNVLDRYETLVNPEQDIPPSIFGLTGINNEMV 65

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRV----LPEMPGEW----ICTMKLARRLW 107
           A+ P  +D+   +        +VAHN +FD       L +   +W    +CT++ AR++ 
Sbjct: 66  ANAPIFDDISEKVLEMLTDRIFVAHNVNFDYSFVHHQLEQAGFKWSAKKLCTVRAARKIK 125

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMADI 164
           PG+  YS   L  +  ++++     + HRA  D   TA L   ++    +G   + +   
Sbjct: 126 PGLGSYSLGNLCNSLNISLE-----NRHRAGGDADATAILFSLLLEWDDAGEIEKMIKKT 180

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
                L              +++ E+   Y
Sbjct: 181 AQDQRLPPNLPPD-----DFNNLPEKPGIY 205


>UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K987_THASP
          Length = 482

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 23/209 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  ID E+ G    +  I EIA + V DG++V     LV P +PI P    +  I++AMV
Sbjct: 7   LAFIDVESTGAHPVRDRITEIAILRVEDGEVVARWESLVAPGQPIPPLIEEVTGISDAMV 66

Query: 59  ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           A+ P  E   D +        +VAH+A FD   +         E     +CT+KL+R L+
Sbjct: 67  AEAPAFEVLADTVAALLEGCVFVAHSARFDYGFIRNAFTRIGREFEAPVLCTVKLSRALY 126

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   ++   AL +   L          HRA+ D  +    +  +   +G+  E +A    
Sbjct: 127 PEHHRHGLDALIERHGLVCAA-----RHRAMGDVEVLWQFVRGL--EAGFAPEVLARAAA 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
           R     T   G   G  +  + +    YL
Sbjct: 180 RAMKAPTQPPGLPEGM-LEALPDAPGLYL 207


>UniRef50_C4ZI99 DNA polymerase III, epsilon subunit n=1 Tax=Eubacterium rectale
           ATCC 33656 RepID=C4ZI99_EUBR3
          Length = 245

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 31/215 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID E  GL      I+EI +  V  G+IV+ +S LV P + I  +   +  IT++ V
Sbjct: 10  YTVIDLEMTGLSAKNDKIIEIGAARVRGGEIVDTISTLVNPKQHIPQRVQELTGITDSDV 69

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            +   +++    + ++ G +  +  N +FD   L +        +      T+K+AR+  
Sbjct: 70  ENAADMDEAVDNLLNFIGDDIILGQNVTFDYSFLKQWAVNHKRTLSLNAYDTLKIARKCL 129

Query: 108 P-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P         L +   ++ +     + HRAL D   T  +   ++         + D  G
Sbjct: 130 PAEQSKKLEDLCEYFGVSRK-----NAHRALDDAIETKQIFEKLL--------ALMDEKG 176

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201
            P          Y+ K  +         LR L   
Sbjct: 177 EPVESKPLV---YKAKKQTPATAHQVRQLRELMAE 208


>UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum
           DSM 20098 RepID=C4FGI7_9BIFI
          Length = 186

 Score =  176 bits (447), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G+      I+EI +V V  G +    S LV P RP+      +  I++ MV
Sbjct: 19  YVVVDLETTGISPARDRIIEIGAVRVEHGTVTAEYSKLVNPGRPVGGFITGLTGISDEMV 78

Query: 59  ADKPWIEDVIPHYYG----SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
            +   IE V+P +      S+  VAHNA+FD   L              ++I T++L+R 
Sbjct: 79  GNASPIEAVLPDFLAHLRPSDTIVAHNANFDINFLYDNCMRTLGKPFSYDFIDTLRLSRA 138

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           L+P  +   +  L +   +  +       HR L D   T      +
Sbjct: 139 LFPQERQHRLVDLIQRFGIADEEE-----HRGLSDALQTVECYERM 179


>UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales
           RepID=A8LQ52_DINSH
          Length = 485

 Score =  176 bits (447), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 22/192 (11%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNP--MSHLVRPDRPISPQAMAIHRITE 55
             I DTET GL       + +IA+  V++GK+V       LV P RPI   A  IH IT+
Sbjct: 291 YVIFDTETTGLLPERGDEVCQIAACRVVNGKMVKTEMFDTLVNPGRPIPLSATNIHGITD 350

Query: 56  AMVADKPWIED---VIPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLAR 104
           AMVAD P           +      +AHNA FD                   + T+ L+ 
Sbjct: 351 AMVADAPDFLTAGRAFHGFADGAVLIAHNAPFDMAFFYRKQAEIGARFDHPVLDTVLLSA 410

Query: 105 RLWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMA 162
            ++    ++S  AL +   + +   P    H AL D   T  + + ++        E   
Sbjct: 411 VIYGQTEQHSLDALAERLNVTI---PEEARHTALGDALATTEVFLKLLPMLQAKGIETFG 467

Query: 163 DITGRPSLMTTF 174
           D+  +       
Sbjct: 468 DLLAQTKKHARL 479


>UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces
           sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO
          Length = 589

 Score =  175 bits (446), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 26/238 (10%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G +     I EI +V V  G+ V   S LV P +PI     ++  IT AM 
Sbjct: 44  FVVVDLETTGAKPGPESITEIGAVKVRGGETVGEFSTLVNPGQPIPAFITSLTGITTAMT 103

Query: 59  ADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWICTMKLA 103
           A  P I  VIP          S    AHNA FD   L                + T+ LA
Sbjct: 104 ARAPRIAAVIPSLIEFLCAGPSTVVAAHNARFDVGHLKAAFAGADFTWPSVRVLDTVALA 163

Query: 104 RRLW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
           RR +    +    ++                +HRAL D   T  +L  ++   G     +
Sbjct: 164 RRAFSSDEVPNFKLSTLA----GACGATTAPNHRALDDARATVDVLHAMLGRLG--PLGV 217

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
             +    +        + R   ++D   R PG  R++    D +       L+  +  
Sbjct: 218 THLEDLATATDPVPRARRRKARLADGIARSPGIYRFIGPAGDVLYVGSSSNLRARVRQ 275


>UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC
           700122 RepID=D0WHF7_9ACTN
          Length = 1045

 Score =  175 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 22/226 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET G       + +IA+  +  G+IV      V P +PI  +   +  I +  V
Sbjct: 57  VVVLDTETTGFSQNHDELTQIAAARMKQGRIVEWFVTFVNPGKPIPEEVARLTDIHDEDV 116

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108
           AD P  +D    +  + G    VAHNA+FD+          P     WI ++ LAR   P
Sbjct: 117 ADAPSPDDARIQLAAFVGDSCIVAHNAAFDKGFCTKSQGGAPLSDNLWIDSLDLARIALP 176

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168
            +K   +       +       +  HRA  D     A    ++       + +       
Sbjct: 177 RLKSHRL-----IDIVKAFDAPVSTHRADADVEALCAAYRIMLAAIAKMPKDLVSYIAEL 231

Query: 169 SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
           +   ++      G    D+            ++   +  +   TL+
Sbjct: 232 ADADSWPT----GAVFKDMTNFQQAVCEAKADSPAVLEKKFPFTLR 273


>UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA
          Length = 948

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 28/228 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I++I  V V   +++N     V P + I      +  IT  
Sbjct: 6   VYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVINHFETDVNPLKEIPAAISRLTGITNK 65

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLAR 104
            V   P  +DV   +     +  +VAHN +FD   +                + T+ L++
Sbjct: 66  RVRHAPLFDDVAGTLYSLLTNTVFVAHNVNFDLPFINAELERVGYPALPIAAVDTVSLSQ 125

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P      +  L +   +        + H A  D   TA L I +          T +
Sbjct: 126 ILLPTATSFRLRDLSRLFNIEHD-----NPHSADSDASATAELFIFLFRRLRALPMVTLQ 180

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSP 207
           +M D+     L TT  F   + +       + P YL ++ N L    P
Sbjct: 181 RMIDLQADLPLQTTTLFRVAQ-QLNEQSPRKLPDYL-YIKNGLALRQP 226


>UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CAB9_9FIRM
          Length = 525

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 73/199 (36%), Gaps = 29/199 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+E+ ++   +G  V   S LV P+  IS +A  I+ IT  MV
Sbjct: 52  YVAFDVETTGLDSKKDRIIEVGAILFENGHTVETYSSLVNPEVKISKEATTINHITNGMV 111

Query: 59  ADKPWIEDV---IPHYYGSE-----WYVAHNASFDRRVLPEMPGE--------WICTMKL 102
              P  + V   +  + G          AHNA FD   L +             + T+ L
Sbjct: 112 KKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQILCLDTLSL 171

Query: 103 ARRLWPGIKYSNMAL-YKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM----NTSGWT 157
           +R++ PG+         K   +  +       HRA+ D  +   +L  ++    +     
Sbjct: 172 SRKIIPGLSNYKQTTVAKHFNIKNKQE-----HRAISDAEVCGEILWKLLSIKKDEEVKK 226

Query: 158 AEQMADITGRPSLMTTFTF 176
            E +      P  M    F
Sbjct: 227 LEILVKSKPSPEEMEVCAF 245


>UniRef50_Q21J48 DNA polymerase III, epsilon subunit n=4 Tax=Gammaproteobacteria
           RepID=Q21J48_SACD2
          Length = 238

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 26/180 (14%)

Query: 3   RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL+      I+EI  V++I+ K+        ++P+R I   A+ +H IT   
Sbjct: 4   IVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITNEF 63

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPG-------------EWICTMK 101
           +ADKP  +D+      +      V HNA FD   L                    + T+ 
Sbjct: 64  LADKPVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDTLA 123

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQM 161
           LAR   PG K +  AL K    +         H AL D  I A +   ++ T G T   +
Sbjct: 124 LARNKHPGQKNNLDALCKRYGADNSARDL---HGALLDAEILADVY--LLMTGGQTNLAL 178


>UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae
           RepID=C5CGL7_KOSOT
          Length = 1430

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET GL      I+EI +V +   +++   S  V+P+R +S +   I  I++  
Sbjct: 418 IYVVFDLETTGLDPSADEIIEIGAVKLKGTEVIGEFSSFVKPERNLSEKVTRITGISDRE 477

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           + D P + +V+P    +      VAHNA+FD R +          +    +I T+ L++ 
Sbjct: 478 LEDAPSLSEVLPKFLEFCKDSVLVAHNATFDYRFVRNAVKQLYNEDWKLPYIDTLALSKS 537

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
           L     YS   + K  KL         HHRA  D  ITA +   +++ +      +  I 
Sbjct: 538 LLKSKSYSLDNVVKRLKLG-----DFEHHRASEDARITAEVFKKLLSMAKKRG--IKKIA 590

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPG 193
              +L         R   V+ +A+   G
Sbjct: 591 ELENLRKHINISSLRPLHVTILAKNKTG 618


>UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas
           subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL
          Length = 247

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 25/226 (11%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        ++E+  ++++D           V P+R I   A+ +H IT+  
Sbjct: 5   IVLDTETTGFDPRTGDRLIEVGCIEILDLLPTGRTFHRFVNPERLIPADAIRVHGITDDK 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104
           V D P    +   +  + G    +AHNA FDR  +    G           WI T++LA+
Sbjct: 65  VKDAPKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHPLLHETRWIDTLQLAQ 124

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           + +PG+  S  AL K  K+++        H AL D  + A + +++        E++ D+
Sbjct: 125 KRFPGMANSLDALCKRYKISLVDRTL---HGALIDARLLAEVYLEL----KGGKERVLDL 177

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELR 210
           + R   +         G  +         +      +   ++  L+
Sbjct: 178 SSRRESVAAAAHAAAGGYGLRPRPLAPRLHASEGEAHAAFLAATLK 223


>UniRef50_D2QE10 DNA polymerase III, epsilon subunit n=3 Tax=Flexibacteraceae
           RepID=D2QE10_9SPHI
          Length = 180

 Score =  174 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G       + EIA       ++V+    L+ P  PI P    +  I++ M
Sbjct: 1   MYCIVDVETTGGVKGPTRLTEIAIFRHDGQQVVDSFHSLLNPGCPIPPFIRHLTGISDEM 60

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V D P   DV            +VAHN  FD   + +             +CT++ +R+L
Sbjct: 61  VQDAPTFADVANDVLNITQDAIFVAHNVGFDFSFIQKELNWLGHDFLRRTLCTVRTSRKL 120

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
            PG   YS   L ++ ++     P    HRA  D   T  L   ++       
Sbjct: 121 LPGYPSYSLGKLCRSLEI-----PLNGRHRAQGDAAATVLLFEMLLKNDAQGL 168


>UniRef50_B9Z6P2 DNA polymerase III, epsilon subunit n=2 Tax=Chromobacterium group
           RepID=B9Z6P2_9NEIS
          Length = 476

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 21/171 (12%)

Query: 3   RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET G    +  I EI  + + DG+ +     LV P +PI P    +  I++AMVA
Sbjct: 8   AIVDLETTGGHITRDRITEIGILLI-DGERIERYETLVNPGQPIPPFIENMTGISDAMVA 66

Query: 60  DKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLWP 108
           + P      + +         +AHNA FD   L             E +CT+KL+RRL+P
Sbjct: 67  EAPPFAALVETLLEKLQGRLLLAHNARFDYGFLKNEFKRAGHVFQSEVLCTVKLSRRLYP 126

Query: 109 G-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
              K+S  +L     + +        HRA+ D       +       G  A
Sbjct: 127 QHFKHSLDSLIARHGIVLA-----DRHRAMADALAVYHFIEAATAELGPEA 172


>UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW
           RepID=B6ISI0_RHOCS
          Length = 699

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 23/180 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       +V +A V +++G+I+       L+ P R I   + AIH IT+
Sbjct: 506 YVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLINPGRAIPAASAAIHGITD 565

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLAR 104
           AMVA+ P  E V+P    + G    VAHNA+FD + L            G  + TM L+R
Sbjct: 566 AMVAEAPRAEAVLPPFRAFVGDAVLVAHNAAFDLKFLRLKQRAAGVRFDGPVLDTMILSR 625

Query: 105 RLWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           ++     ++S   L     + +     +  H A+ D  +TAA+ + +M+       +  D
Sbjct: 626 QIQGDHGEHSLDGLAARLGIGL-----VDRHSAMGDSLMTAAIFLRLMDMLETQGIRTLD 680


>UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Slackia heliotrinireducens DSM 20476
           RepID=C7N494_SLAHD
          Length = 986

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 18/189 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L ++DTET GL      + +IA+  +  G+I +     V P +PI  + + +  I +  V
Sbjct: 6   LVVLDTETTGLSYNHDELTQIAAARMECGEITDWFVTFVNPGKPIPDEIVRLTNIHDEDV 65

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE-------MPGEWICTMKLARRLWP 108
            D P  ++    +  + G  + VAHNA FD+    +           W+ ++ LAR   P
Sbjct: 66  VDAPTPDEARALLAEFIGDAYVVAHNADFDKHFCTKSESGECLNRNIWVDSLALARIALP 125

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRP 168
            +K   +       L       +  HRA  D     A+   +++        + +     
Sbjct: 126 RMKSHRL-----IDLVHAFDAPISTHRADADVEALCAVYRILLSAVATMPPDLVEYIANL 180

Query: 169 SLMTTFTFG 177
           +    +  G
Sbjct: 181 APREEWPTG 189


>UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae
           RepID=B4W5N5_9CAUL
          Length = 241

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 33/229 (14%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        ++E+  +++ D           V P+R I P A+ +H IT+  
Sbjct: 5   IVLDTETTGFDPKTGDRLIEVGCIEIQDLLPTGRTFHRFVNPERLIPPDAIRVHGITDDK 64

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM----------PGEWICTMKLAR 104
           V D P   ++   +  + G    +AHNA FDR  +                WI T+KLA+
Sbjct: 65  VKDAPKFHEIADDLIEFIGDAPMIAHNAGFDRNFIDFEYKLCGRPITGETRWIDTLKLAQ 124

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
             +PG+  S  AL K  K+++        H AL D  + A + +++        E++ D+
Sbjct: 125 ARFPGMPNSLDALCKRFKVSLVERTL---HGALIDARLLAEVYLEL----RGGKERVLDL 177

Query: 165 TGRP--------SLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSM 205
           +  P        ++ T     + +  A+    E    ++ +L   L   
Sbjct: 178 SSAPVAGRSAGVAVPTAAYGPRPQPLALRSSPEEQAAHIAFLAKALKDR 226


>UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus
           RepID=Q1IXC1_DEIGD
          Length = 180

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 27/178 (15%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVN--PMSHLVRPD------RPISPQAMAI 50
           + + D ET GL      IVEI ++ V+DG++V       LVRP        PI  +A  +
Sbjct: 3   VVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRV 62

Query: 51  HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98
           H I++AMV D P +  V+P +    G     AHN  FD   +                 C
Sbjct: 63  HGISDAMVQDAPELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGLVWAPPAEYC 122

Query: 99  TMKLARRLWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
           T++L+RR +P  +  N+  L +   L+         HR+L D  +TA   + +M    
Sbjct: 123 TVQLSRRAFPRERTHNLDVLAQRLGLSFA---PGGRHRSLGDVQVTAEAFVRLMERLS 177


>UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6
           Tax=Rhodobacteraceae RepID=DPO3E_RHOCA
          Length = 704

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 21/172 (12%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GL       IV+IA+V +++G+ V       LV P RPI   + A+H ITE
Sbjct: 510 FVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITE 569

Query: 56  AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104
           AMVA  P I +V      +      VAHNA FD   L               + T+ L+ 
Sbjct: 570 AMVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIGKNFDNPVLDTVLLSA 629

Query: 105 RLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG 155
            ++   + +S  AL     + +   P    H AL D   TA   + ++    
Sbjct: 630 VVFGAAEGHSLDALTHRLGITI---PEEARHTALGDTVATAEAFLRLLPALK 678


>UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria
           RepID=Q1QW65_CHRSD
          Length = 253

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 31/193 (16%)

Query: 3   RIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G+       ++EI +V+V++ ++        + P+R I P+A+ +H IT   
Sbjct: 4   IVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITNER 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEM------------------PGEW 96
           VAD+P   D+      Y      V HNA+FD   +                         
Sbjct: 64  VADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYCSV 123

Query: 97  ICTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           + T+ +AR+L PG + +  AL K   ++         H AL D  I + + + +  T G 
Sbjct: 124 LDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVL---HGALLDAEILSDVYLTM--TGGQ 178

Query: 157 TAEQMADITGRPS 169
           TA  +A I  R  
Sbjct: 179 TALSLAGIEERAG 191


>UniRef50_C3CTS6 DNA polymerase III PolC n=1 Tax=Bacillus thuringiensis Bt407
           RepID=C3CTS6_BACTU
          Length = 286

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 63/170 (37%), Gaps = 22/170 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET          I EI +V  IDGK+V+  S L+ P+  I      +  IT  M
Sbjct: 19  FVVLDIETTAFSPVKGGRITEIGAVKYIDGKVVDKYSQLINPEMKIPANITKLTGITNDM 78

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDR-RVL--------PEMPGEWICTMKLARR 105
           V  KP    V+P    +      VAHNA FD  R L             E + ++ + + 
Sbjct: 79  VQGKPVYGQVLPVFQQFIDGFLVVAHNAKFDWNRFLLFYFEKVGIHPKNEVLDSVAVFQH 138

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
             P   KY       T           + HRA  D   T   L+++    
Sbjct: 139 FCPNKGKYKLDDFCTTFG-----YLNKNRHRAYEDAEATGYCLLELKRRF 183


>UniRef50_A0LZ46 Exonuclease family protein n=14 Tax=Bacteroidetes
           RepID=A0LZ46_GRAFK
          Length = 457

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 24/209 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  I+D ET G +    GI EIA       K+V+    LV P++PI P  + +  I   M
Sbjct: 1   MYAILDIETTGGKYNEEGITEIAIYKFDGQKVVDQFISLVNPEQPIQPFVVNLTGINNDM 60

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           + + P   +V             VAHNA FD R+L         E   + +CT++L+++L
Sbjct: 61  LKNAPKFYEVAKRIVEITEDCILVAHNAKFDYRILRTEFRRLGFEYERKSLCTVELSKKL 120

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            PG+  YS   L ++  +     P    HRA  D   T  L   ++       + +    
Sbjct: 121 IPGLPSYSLGKLVRSLGI-----PLSDRHRAAGDAQATIKLFKMLLAKDVE--KDIMK-- 171

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
                             + ++      Y
Sbjct: 172 EHVRKEPKRNLDTKLVFILEELPSETGVY 200


>UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19
           Tax=Listeria RepID=B8DC27_LISMH
          Length = 928

 Score =  173 bits (439), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 22/161 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G Q      I++ A+  V  GK +   +  + P++PI      +  I+   
Sbjct: 6   YIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKD 65

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105
           V + P  EDV P          +VAHN SFD   L              + + T++LAR 
Sbjct: 66  VKNAPLFEDVAPIIAGLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARI 125

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAA 145
           ++PGI  Y    L     L    P     HRA  D  +TA 
Sbjct: 126 MYPGIDSYKLQDLSDEFNLGHDKP-----HRADSDAEVTAD 161


>UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67NP5_SYMTH
          Length = 958

 Score =  172 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 20/158 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET G       ++E+A+V   DG+ +   S L+ P  P+  +   +  I  AM+
Sbjct: 6   FVAIDVETTGTSPEHDRLIEVAAVRFEDGREIGCFSRLIDPGCPVPQRIQHLTGIHPAML 65

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           A KP IE+V+P    + G    VAHNA FD   L          +P     T +LAR   
Sbjct: 66  AGKPRIEEVVPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGRSLPNWSYDTAELARVAL 125

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITA 144
           P  +   +A L +   L     P  HHHRA  D     
Sbjct: 126 PLARNHRLATLAELLGL-----PLEHHHRAEDDARACG 158


>UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2
           Tax=Exiguobacterium RepID=B1YHQ6_EXIS2
          Length = 937

 Score =  172 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        ++EI    + DG+I   +S  VRP +PI P    +  IT+  
Sbjct: 5   FVVVDLETTGHSIKSGDEMIEIGVAVIEDGQITERLSAFVRPQKPIPPFISQLTGITDED 64

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105
           VA       + P          +VAHN  FD   L E           G  I T++LAR 
Sbjct: 65  VAQAESFATIAPRVLQLLDGGVFVAHNVQFDLTFLNEALEEEGYLPYTGPVIDTVELARI 124

Query: 106 LWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAA 145
           L P  +  +++ L +  +L          HRA  D   TA 
Sbjct: 125 LLPTAESHSLSHLTEALQLTHH-----EAHRAGSDAEATAE 160


>UniRef50_Q3SKJ9 DNA polymerase III, epsilon subunit n=4 Tax=Proteobacteria
           RepID=Q3SKJ9_THIDA
          Length = 470

 Score =  172 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 27/211 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G       + EI  V V+DG  V   S LV P+R I      +  I+  MV
Sbjct: 10  LAFVDLETTGANAARDRVTEI-GVVVVDGDRVETWSTLVNPERAIPQFIQQLTGISNEMV 68

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
           AD P    V            ++AHNA FD   L             + +CT++L+RRL+
Sbjct: 69  ADAPTFARVADELAERLDGRLFIAHNARFDYGFLKHEYQRLGRRFRADVLCTVRLSRRLF 128

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT--AEQMADI 164
           P   +++  +L     L  +       HRAL D  +       +         AE +A  
Sbjct: 129 PEHYRHNLDSLIARHGLATEG----DRHRALADADLIWQFWRTLQREHEAQALAEAVAHQ 184

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
             RP+L             + D+ E    YL
Sbjct: 185 LLRPALPPHLDP-----ALLEDLPESPGVYL 210


>UniRef50_Q0HVL5 DNA polymerase III, epsilon subunit n=55 Tax=Bacteria
           RepID=Q0HVL5_SHESR
          Length = 239

 Score =  172 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 26/210 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL        +EI +V +  G+I    S L+ P   I+        I+  M
Sbjct: 40  LVVLDFETSGLSPNQGARAIEIGAVLIEQGQITARFSELMNPGFRINSFIEDYTGISNQM 99

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           +A      +V      + G    VAHNA+FD+R L         + PG++ C++ LARRL
Sbjct: 100 LAHAAPCAEVMARFAAFIGKHHLVAHNAAFDQRFLDAEFAQIGHQYPGQFGCSLLLARRL 159

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           +P      +A     K   Q P     HRAL D  +T  L + ++            IT 
Sbjct: 160 YPEAINHQLATLVRHK---QLPTDGTFHRALADAEMTGHLWLRMLADLKQG----YAITE 212

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
            P  +      K +    ++V +    Y R
Sbjct: 213 PPFSLMQKIMTKTK----AEVPKFLRQYAR 238


>UniRef50_C9M9P8 DNA polymerase III, alpha subunit n=2 Tax=Synergistaceae
           RepID=C9M9P8_9BACT
          Length = 208

 Score =  172 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL      I+E+ ++  + GK     S L+ P  PI     +IH IT+ MV
Sbjct: 12  YVALDIETTGLSPRSCSIIEVGALKFVPGKKGEEFSSLIDPGCPIPASGRSIHGITDDMV 71

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV----LPEMPGEW-----ICTMKLARRL 106
           A +P +E+VI     + G    V HNA FD       L ++  +W       T+ L+R  
Sbjct: 72  AGQPRVEEVIAGLLDFVGPAPLVLHNAPFDLSFIAPVLDKLGRKWQAMTVFDTLPLSRVA 131

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164
           +PG++ YS  +L    +          HHRAL DC+ T  L    +         ++AD+
Sbjct: 132 FPGLRSYSLESLSDFFEFK-----EGVHHRALCDCWYTQQLFTRFLEKVDQLRCLELADL 186

Query: 165 TGR 167
              
Sbjct: 187 AHE 189


>UniRef50_C4K928 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T
           RepID=C4K928_THASP
          Length = 502

 Score =  172 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 82/214 (38%), Gaps = 30/214 (14%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDV-IDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L  +D ET G    +  I EI  V V  DG  V   S LVRP   I      +  I + M
Sbjct: 12  LAFVDIETTGGPAQRESITEIGIVQVDEDG--VREWSTLVRPASRIPETIQRLTGIDDDM 69

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106
           VAD P  ED+            +VAHNA FD   L               +CT+KL+RRL
Sbjct: 70  VADAPRFEDIADEVFDRLDGRLFVAHNARFDHGHLRAAFRRAGLDMRPQVLCTVKLSRRL 129

Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163
           +P  +      L +   L V        HRAL D  +       I      G     + +
Sbjct: 130 FPDHRRHGLDHLIERHGLAVA-----DRHRALGDARLLWQFWQKIHERFPPGHIDAAVRE 184

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRW 197
           + G PSL       +     ++D+ +    YL +
Sbjct: 185 LIGHPSLPPHLDPEQ-----IADLPDTPGVYLFY 213


>UniRef50_A5LYL7 DNA polymerase III PolC n=2 Tax=Streptococcus RepID=A5LYL7_STRPN
          Length = 910

 Score =  172 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 25/210 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      ++++A+  +  G ++      + P  P+S     +  IT+  V
Sbjct: 425 YVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTELTGITDDHV 484

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
            +   +E V+     +      VAHNA+FD            LP++    I T++ AR L
Sbjct: 485 KNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNANYERHDLPKISQPVIDTLEFARNL 544

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS--GWTAEQMAD 163
           +P  K   +  L K   + ++     HHH A YD   T  LL   +           +A 
Sbjct: 545 YPEYKRHGLGPLTKRFGVALE-----HHHMANYDAEATGRLLFIFIKEVAEKHGVTDLAR 599

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
           +     L++  ++ K R K  +   +   G
Sbjct: 600 L--NIDLISPDSYKKARIKHATIYVKNQVG 627


>UniRef50_C1SK59 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Denitrovibrio acetiphilus DSM 12809
           RepID=C1SK59_9BACT
          Length = 228

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 22/182 (12%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  +IDTET GL      I+ +A+V V + KI++  +  + P+  I  +++  H IT+ M
Sbjct: 44  VFSVIDTETTGLDLNDARIINVAAVKVQNFKIIDFYNSFINPETEIPKESIQWHNITDEM 103

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           VADKP   +V+P +         V H+ +FD +++          ++   W+ TM +   
Sbjct: 104 VADKPTAGEVLPDFLNFVDDSIIVGHHVTFDIKMINKEMMDSFSCQINNNWLDTMLIYSH 163

Query: 106 LW--PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
                  +YS   L     +          H AL D   TA +   ++  +    + + +
Sbjct: 164 AIIKKDERYSLDYLLDLYNVTCNG-----RHTALGDALATAEVFTKMIMQASREFKTVRE 218

Query: 164 IT 165
           + 
Sbjct: 219 LC 220


>UniRef50_UPI0001BC319F DNA polymerase n=1 Tax=Butyrivibrio crossotus DSM 2876
           RepID=UPI0001BC319F
          Length = 234

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 36/222 (16%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL      I+E+ +V   DGK V+  + L+ P   I  +   I  I + MV
Sbjct: 5   FVAIDLETTGLSPYDNKIIELGAVRYRDGKPVDQYNTLINPGVHIPERITEITGIDDDMV 64

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           +  P+I+D +     + G++  + HN  FD   +         E   E I T+K A+++ 
Sbjct: 65  SKAPYIDDELDRIMEFIGNDVILGHNVIFDYTFIAGALAGHSIEYSAEAIDTLKFAKKVL 124

Query: 108 P-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P     +   L +   +         HHRA  D    A +   +             ++G
Sbjct: 125 PANESKNLEHLCEMFDI------VTIHHRAYEDAMSAANVYFRLCE-----------LSG 167

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
             +++  + F K +   ++    +   YL+ L     ++ P+
Sbjct: 168 EETIVEQYHFKKQKAAGIT---PKQVNYLKSLIER-HNIKPD 205


>UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae
           RepID=DPO3E_AQUAE
          Length = 202

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID E  G       ++++A+V V  G I    S LV P   I  +   +  IT AM+
Sbjct: 19  FVVIDLEATGFDVEKSEVIDLAAVRVEGGIITEKFSTLVYPGYFIPERIKKLTGITNAML 78

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
             +P IE+V+P +    G    V H    D + +          +     +CT+KLAR++
Sbjct: 79  VGQPTIEEVLPEFLEFVGDNIVVGHFVEQDIKFINKYTKQYRGKKFRNPSLCTLKLARKV 138

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +PG+ KYS   + +              HRAL D  +TA + I I+   
Sbjct: 139 FPGLKKYSLKEIAENFGFETNGV-----HRALKDATLTAEIFIKILEEL 182


>UniRef50_Q26FQ2 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteria bacterium
           BBFL7 RepID=Q26FQ2_9BACT
          Length = 466

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET G +     + EI  V +    I++  S L+ P+  I      +  I  AM
Sbjct: 7   LYCVVDIETTGNRMTGNRMTEICIVRMRGDTILDKYSSLIDPEVLIPDYITTLTGIDNAM 66

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRL 106
           VA  P   DV      +     +VAHN +FD  VL         +   + +CT++L+R L
Sbjct: 67  VASAPVFADVAEEILNFTKDYIFVAHNVNFDYNVLRNEFKRLHHDFKRKKLCTVRLSREL 126

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            PG++ YS   L     +     P ++ HRA  D   T  L   ++ T     +      
Sbjct: 127 IPGMRSYSLGKLCDDIGI-----PLINRHRAEGDTDATVILFQKLI-TIDQEGDIFNKFI 180

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
                  TF     R      + E    YL
Sbjct: 181 KGNFKEGTFPPHLDR-TQFDQLPETPGVYL 209


>UniRef50_A4CLT9 Putative uncharacterized protein n=1 Tax=Robiginitalea biformata
           HTCC2501 RepID=A4CLT9_9FLAO
          Length = 375

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 41/241 (17%)

Query: 2   LRIIDTETCGLQ-GG--IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G +     I EIA       ++V+    L+ P+RPI P    +  I   MV
Sbjct: 3   YAVLDIETTGGKFDEEGITEIAIHRFDGHEVVDTFISLINPERPIQPYVQKLTGIDPKMV 62

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
              P    V             VAHNA FD R+L             + +CT+ L++RL 
Sbjct: 63  QTAPRFHQVAKRIVEITRDSVLVAHNAQFDYRILRTEFRRLGYNFERKTLCTVDLSQRLI 122

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-SGWTA------- 158
           P    +S   L ++  +     P  + HRA  D   T  LL  +++  +G T        
Sbjct: 123 PDAESHSLGKLVRSLGI-----PVSNRHRANGDALATLKLLQHLLDRDTGKTITSEVIRA 177

Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE 218
           E + +++ R            + + V +  +    Y  +   + + +  +    +K  L 
Sbjct: 178 ETLGELSNR------------QLRFVEEAPDSVGVYYLY-DKDGNLLYLDGTRDMKRSLN 224

Query: 219 N 219
            
Sbjct: 225 R 225


>UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon
           subunit) n=1 Tax=Deinococcus deserti VCD115
           RepID=C1CX37_DEIDV
          Length = 202

 Score =  172 bits (437), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 28/190 (14%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVN--PMSHLVRPDRP------ISPQAMAI 50
           + + D ET GL      IVEI ++ V++G++        LVRP         I   A  +
Sbjct: 3   VVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQRV 62

Query: 51  HRITEAMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGEW---------IC 98
           H I+  MV   P IE+V+P +    G    VAHN  FD   +                 C
Sbjct: 63  HGISNEMVRSAPTIEEVLPEFLEFVGDSAVVAHNVGFDCGFMRAQARRLGMVWAPAGEHC 122

Query: 99  TMKLARRLWPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           T++L+RR +P  +  N+  L +   LN         HR+  D  +TA   + ++     T
Sbjct: 123 TVQLSRRAFPKERAHNLTVLAERLGLNFA---PGGRHRSFGDVQVTAHAYVRLLELL-AT 178

Query: 158 AEQMADITGR 167
           AE    ++G+
Sbjct: 179 AEPQQRVSGK 188


>UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis
           subsp. lactis RepID=C6A933_BIFLB
          Length = 188

 Score =  172 bits (437), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 22/164 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G       I EI +V V DGKIV+  + LV P R +S +   +  I+  M+
Sbjct: 11  YISLDLETTGFSAQNDRITEIGAVKVRDGKIVDRFTQLVNPGRRVSARITELTGISNEML 70

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL-----------PEMPGEWICTMKLAR 104
            D+P IED++  +     ++  V HN  FD   L                  I TM + R
Sbjct: 71  EDQPVIEDILGDFIHWTENDRLVGHNTKFDLSFLIANAERVFSDSTRFSVRPIDTMHIDR 130

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLI 148
            L+P  ++  + L +   +       +  HRAL D   T   L 
Sbjct: 131 LLFPSERHRLVDLIQRYGIG-----DVEEHRALSDATQTYQCLE 169


>UniRef50_A1BGS1 DNA polymerase III, epsilon subunit n=6 Tax=Bacteria
           RepID=A1BGS1_CHLPD
          Length = 219

 Score =  172 bits (436), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 25/206 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL        +EI +V V  G+IV+    L+ P   IS    +   IT  M
Sbjct: 9   VVVLDFETTGLSPQYGDRAIEIGAVLVEHGEIVDRYQKLMNPGFRISRFIESYTGITNEM 68

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           ++ +P  E+V      +      VAHNASFDRR L            G   C++ ++RR+
Sbjct: 69  LSGQPCCEEVMTEFSEFIAGHNIVAHNASFDRRFLDFELKRAKRVYEGACCCSLLVSRRI 128

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159
           +       +    +       P     HRAL D  +TA L + +++             +
Sbjct: 129 YQDSPNHKLQTLVSH---AGIPEIGSFHRALADAEMTAHLWMSMIDRIRLQYGISMIFFD 185

Query: 160 QMADITGRPSLMTTFTFGKYRGKAVS 185
           Q+++++    L T         + + 
Sbjct: 186 QLSELSKIDKLYTHRYLTALADEPLR 211


>UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella
           paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA
          Length = 970

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 71/183 (38%), Gaps = 23/183 (12%)

Query: 1   MLRIIDTETC---GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET       G I++IA   V + KI+N  S L+ P   I    + +  I   M
Sbjct: 33  IYAVVDLETTRTTSESGRIIQIAIAFVQNKKIINQFSTLINPHESIPRNVVQLTGINAEM 92

Query: 58  VADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARR 105
           VA  P  E+V            +VAHN +FD   L                I T+ L++ 
Sbjct: 93  VAGAPSFEEVAESIHTMLTGTIFVAHNVNFDLPFLNAEFQRIGMNTLNLVAIDTVTLSQI 152

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161
           +WP      +    +    V   P    H+A  D   TA LLI I N        T + +
Sbjct: 153 VWPTAPGFRLVDLTSYLALVHGRP----HQADSDALATAELLIQIFNRLESLPMVTLQSL 208

Query: 162 ADI 164
            D+
Sbjct: 209 VDL 211


>UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii
           PG-8A RepID=A9NEU3_ACHLI
          Length = 1504

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 42/232 (18%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  + D ET G       I+EIA+  V  G I      L+ P+  +S     I  IT+ M
Sbjct: 411 VYTVFDIETTGFSFTRDKIIEIAAYKVRGGFIAERFEVLINPEEQLSETTKRITNITDEM 470

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARR 105
           V ++  IE+V+P    +      VAHNASFD            L   P   I T+ +AR 
Sbjct: 471 VENEKTIEEVLPTFLEFIKGTVLVAHNASFDIGFIYEKSRLLGLQHEPFAVIDTLNIARY 530

Query: 106 LW--------------------PGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITA 144
            +                    P +K  N+ AL K  K+N++      HHRA+YD Y TA
Sbjct: 531 FYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA-----HHRAIYDAYATA 585

Query: 145 ALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
            + ++++       E  +    + SL     +     K  + +A+   GY  
Sbjct: 586 EVFLNMLQDFYKE-EIYSYFELQASLDMNEVWRHPIPKYATVLAQTQEGYKN 636


>UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1
           Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM
          Length = 1442

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 23/210 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      ++E  +V + +G  ++     ++P   I         I+  MV
Sbjct: 393 YVVFDLETTGLSAKYDYMIEFGAVKIKNGLRLDSKQLFIKPPISIPAFIEKKTNISNEMV 452

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
            +     +V+       G    VAHNASFD   L E         +    I T+ +AR +
Sbjct: 453 RNAKSFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRKPLTNPVIDTLDMARAI 512

Query: 107 WPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM--NTSGWTAEQMAD 163
                      +    KLN         HRA YD  I A     ++      +  E + D
Sbjct: 513 LSDRSRFALEYVSNHYKLNYSRS---DAHRADYDANILADAFEHLLVDAKRQFQVETIRD 569

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
           +  +  + T   F +   K    +A+   G
Sbjct: 570 LQDK--VHTDSDFKRMFSKHAIVIAKNQAG 597


>UniRef50_Q2GJZ1 DNA polymerase III, epsilon subunit n=9 Tax=Anaplasmataceae
           RepID=Q2GJZ1_ANAPZ
          Length = 244

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL       I+EI  V+++D  +        + P+R IS  A  +H IT   
Sbjct: 6   IVLDTETTGLDADGGDRIIEIGCVELVDYVMTGRVFHKYIDPERDISVAATRVHGITRES 65

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL----------PEMPGEWICTMKLAR 104
           +   P   +V      +      V HNA FD R L            +    + T+++AR
Sbjct: 66  LIGMPKFAEVADELLDFLQDSALVIHNARFDMRFLEVEIERLSNKRAITNTIVDTLEMAR 125

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA 158
           + +PG+  S  AL K   ++ Q       H AL D  + A + ++++       
Sbjct: 126 KKFPGMPASLDALCKRFNISTQ---ERKFHGALKDATLLARVYVELLEALQRRL 176


>UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11
           Tax=Lactobacillales RepID=A5VK04_LACRD
          Length = 954

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 27/219 (12%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEA 56
           +  ++D ET G        I++I  V V DG+I+N     + P   I    + +  I + 
Sbjct: 18  IYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIINHFETKINPREKIPRSIVQLTGIEDK 77

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLAR 104
            V   P  ED+   I        +VAHN +FD   L         P +    I T+ L++
Sbjct: 78  DVRKAPLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLSQ 137

Query: 105 RLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAE 159
            L P  K   +  L  +  +        H H A+ D   TA LL D++         T E
Sbjct: 138 ILLPTAKSFRLRDLTSSLHIEHD-----HPHSAVSDAEATADLLNDLLKRVQELPTLTLE 192

Query: 160 QMADITGRPSLMTTFTF-GKYRGKAVSDVAERDPGYLRW 197
           ++  +       T   F  + + +  S     +  Y+  
Sbjct: 193 KITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEELYVSH 231


>UniRef50_A0M4R6 Protein containing exonuclease domain n=2 Tax=Flavobacteriaceae
           RepID=A0M4R6_GRAFK
          Length = 507

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 22/208 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET G       I EI  + V +GK+++  S LV P + I      +  I + MV
Sbjct: 6   FAITDIETTGNGIKGNRITEICVIVVQNGKVIDEYSSLVNPSQAIPLYIETLTGINDEMV 65

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
            + P   ++            +VAHN +FD  ++             + +CT++L ++L 
Sbjct: 66  FNAPQFSEIADEITKITKDCIFVAHNVNFDYNIIRAEFASLDRDFKRKRLCTVRLTKKLI 125

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           PG+  YS   +  +  +     P +  HRA  DC  T  L    ++      E +  +  
Sbjct: 126 PGLFSYSLGNICTSINI-----PHIDRHRAKGDCDATVTLFQRCIS-LDPEFEVINQLLN 179

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGY 194
           + +  +      ++      +      Y
Sbjct: 180 QKTAASYLPPN-FKSSDFEKLPITTGVY 206


>UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria
           RepID=A8EU91_ARCB4
          Length = 247

 Score =  171 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 28/245 (11%)

Query: 2   LRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             + DTET G   +  +++  ++ V +   V     L     PI  +AM +H IT  ++ 
Sbjct: 4   YVLFDTETTGAAQEDRVIQFGAMIVDNKGKVEAFDELCSAPIPIKLEAMEVHNITPDLLE 63

Query: 60  DKPW-----IEDVIPHYYGSE-WYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPG 109
           +KP          +      E + +AHN +FD  ++ +       + I T++ A+ L+  
Sbjct: 64  NKPKAVETNFYKRLEELNSDENYLIAHNINFDLDMIKKEGFENSYKLIDTLRCAKHLFSD 123

Query: 110 IKYSNMALYKTRKLNVQ---------TPPGLHHHRALYDCYITAALLIDIMNTSGW---- 156
           + Y  +  Y    L++              +  H A+ D  +    L  ++         
Sbjct: 124 LPYHRLQ-YLRYALDLYKFEENEASKYGITIKAHDAIGDVLVMKLFLSKLVGKCREVYPS 182

Query: 157 --TAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLK 214
               E++ ++T  P  + TF FGKY+G+ + +VA+ D  YL W+  +++ +  +++ TL 
Sbjct: 183 LNPMEKLVELTTTPVFINTFKFGKYKGQNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242

Query: 215 HYLEN 219
             L N
Sbjct: 243 KVLGN 247


>UniRef50_C6RD51 Mature parasite-infected erythrocyte surface antigen n=2
           Tax=Campylobacter RepID=C6RD51_9PROT
          Length = 311

 Score =  171 bits (434), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D ET G    G I+EI ++ + +G+I+      V     +      +  IT   +
Sbjct: 72  IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVYAP-YVPENISELTGITAEHL 130

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P +  V+  +    G   +VAHN  FD   +          E+    +CT+ LARR 
Sbjct: 131 KNAPSLAFVMEQFKVFLGQSVFVAHNVRFDYGFISATLEALGYGELLNRKLCTIDLARRT 190

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163
               KY    L +   ++        HHRAL D    A +    +        T E + +
Sbjct: 191 IASPKYGLGTLKEILGIDNT------HHRALSDAIAAAEIFKYSLQKLPSEVRTTEDLIE 244

Query: 164 ITGRPSLMTTF 174
            +     M   
Sbjct: 245 FSKSAKTMKRL 255


>UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia
           RepID=C6V4W1_NEORI
          Length = 228

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 25/203 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            I+DTET GL       ++EI  V+++D +I        + P+R IS +A  +H IT   
Sbjct: 7   VILDTETTGLDMKNGDRVIEIGCVEMVDFRITGEIFHIYLNPEREISKEATRVHGITFEQ 66

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE-----------WICTMKLA 103
           +AD P   D+   +    GS   VAHNASFD R L                  I T+ +A
Sbjct: 67  LADSPKFIDIADDFLQFIGSSEIVAHNASFDIRFLNSELIRARQRRLIKLENVIDTLAMA 126

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           R+++PG   S  AL +  +++++       H AL D  + A + I++   S  +   M+ 
Sbjct: 127 RKIFPGSPASLDALCRRFRISLEQR---EFHGALLDAQLLARVYIEL---SKGSQVSMSF 180

Query: 164 ITGRPSLMTTFTFGKYRGKAVSD 186
           + G  +      F +     ++ 
Sbjct: 181 LEGSSASSEKKMFKEREKLIITP 203


>UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3
           Tax=Lactobacillus RepID=C0WTL9_LACBU
          Length = 945

 Score =  170 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 30/217 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        I++ +   V  GKIV      + P R +  + + +  IT   
Sbjct: 7   YAVVDIETTGTDMSVDNRIIQFSCTLVAHGKIVETYVSDINPQREVPERIIQLTGITPER 66

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           +   P  + V   +        +VAHN +FD   L         PE+  E I T+ L++ 
Sbjct: 67  LKKAPTFDQVSSKLYKLLSGTVFVAHNVNFDFPFLNGEFQRVGYPELDIEAIDTVTLSQI 126

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG----WTAEQ 160
           L P +  Y    L     +        H H A  D   TA LL+ ++         T EQ
Sbjct: 127 LLPTLSSYRLQDLSTYFNI-----IHNHPHTADSDALATAKLLLILLRQVKMLPRRTLEQ 181

Query: 161 MADITGRPSLMTTFTF----GKYRGKAVSDVAERDPG 193
           +  I     L T   F     + R +++++       
Sbjct: 182 IIQINPSLPLDTMKVFIQVNDENRSESLAEKLPDQLK 218


>UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales
           RepID=A8VXY5_9BACI
          Length = 935

 Score =  170 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 81/224 (36%), Gaps = 36/224 (16%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             I+D ET G+       I++IA   + D +++   S  +  D+P+     ++  I+   
Sbjct: 4   YVILDLETTGVAYDKGDRIIQIAYQVLEDQEVLKRFSTYINYDKPVPAFIQSLTGISGEH 63

Query: 58  VADKPWIEDVIPHYYGS---EWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           + + P  E+V P         ++VAHN  FD + L E           G  I T++LAR 
Sbjct: 64  LKNAPLFEEVAPEILSDLEEAYFVAHNVEFDLKFLNESLEDAGYASFQGPVIDTVELARI 123

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS----GWTAEQM 161
             P      ++                 H+A  D   T AL  ++ +        T + +
Sbjct: 124 CLPSEDSYRLSDLA----KTVQATHTAPHQADSDVEATRALFNELFDKISGLPSETLDHL 179

Query: 162 ADIT-----------GRPSLMTT-FTFGKYRGKAVSDVAERDPG 193
             ++                 T  F F +YRG A+  V      
Sbjct: 180 ISLSPHFKSDITEILRECRQHTVAFGFDRYRGMAIKSVHPHRKD 223


>UniRef50_A4SZE6 DNA polymerase III, epsilon subunit n=1 Tax=Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1
           RepID=A4SZE6_POLSQ
          Length = 466

 Score =  170 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 66/189 (34%), Gaps = 21/189 (11%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G    +  I EI    + +  I      L+ P   I      +  I+  MV
Sbjct: 11  LAFVDIETTGSHFDRDRITEIGIKTLANDGI-QVWERLINPQTFIPQNIQRLTGISPQMV 69

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
             +P  + V          + +VAHNA FD   +             + +CT+KL+R L+
Sbjct: 70  EGQPSFDQVAKELKQELEGKIFVAHNARFDYGFIKASFKRVGIDFKPKVLCTVKLSRLLF 129

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT--AEQMADIT 165
           P     N+       +N         HRAL D  +            G     E +  + 
Sbjct: 130 PEQPRHNLDTI----INAHGLQVSARHRALGDADLLLQFWRVCEAKFGAEKLNEVINQLI 185

Query: 166 GRPSLMTTF 174
           G PSL    
Sbjct: 186 GNPSLPPNI 194


>UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1
           Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ
          Length = 466

 Score =  170 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 28/204 (13%)

Query: 1   MLRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55
           +  + DTET GL   +  IV+I ++ ++DGK+V       LV P  PI   +  IH IT+
Sbjct: 273 VYCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETFDTLVDPGGPIPRASSKIHGITD 332

Query: 56  AMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLAR 104
            MV  +P I +       +      VAHNA FD   L               + T+ ++ 
Sbjct: 333 KMVMGQPRIAEAGRRFFEFSKESVLVAHNAPFDMSFLRRHEKAMGVAFDHPIVDTVLVSA 392

Query: 105 RLWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            ++   +      + +   + ++       H AL D  +TA  +  ++         + +
Sbjct: 393 IIFGTTERHMLDVVCERLGIRIEKK---DRHTALGDARVTAEAMKRMLP--------LLE 441

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDV 187
             G  +        + RG+ V+D+
Sbjct: 442 ARGIKTFGKLIAETRKRGRLVADL 465


>UniRef50_Q1Q8L3 Exodeoxyribonuclease X n=1 Tax=Psychrobacter cryohalolentis K5
           RepID=Q1Q8L3_PSYCK
          Length = 242

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 14/220 (6%)

Query: 4   IIDTET-CGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKP 62
           IIDTET  G     +++A+++V  G             R ISP  + +H IT+  VA   
Sbjct: 13  IIDTETDQGRDPRPIQVATINVATGF---EWMKYFNSGRSISPVVIRVHGITDDDVAGLE 69

Query: 63  WIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALY--KT 120
             E  +  +   E+ + HN  FD RV+     + ICT++LAR  +P       +    + 
Sbjct: 70  RFE--LEQFELPEYLIGHNVRFDWRVIGSPSAKLICTVRLARVAFPEWSAYGQSKCIEQL 127

Query: 121 RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMT---TFTFG 177
                 +   +  H AL D  +   L               A      +         FG
Sbjct: 128 LGKGEASRMTIAAHDALGDARMCYLLYQACCERLEIAPTDFAAAHAIANKANPVGKMPFG 187

Query: 178 KYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYL 217
           K++G  + +V      Y++W+  N+ +M P L   L   +
Sbjct: 188 KHKGMPIKEVP---ISYVKWMLGNIHNMQPSLYSALTKRI 224


>UniRef50_D1YAF0 GIY-YIG catalytic domain protein n=2 Tax=Propionibacterium acnes
           RepID=D1YAF0_PROAC
          Length = 633

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 29/214 (13%)

Query: 2   LRIIDTETCGLQ--GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             ++D ET G      I EI +V V  G++      LV P   I      +  IT+ MV 
Sbjct: 68  FCVVDLETTGTSEGSQITEIGAVKVCGGRVEGEFQTLVCPTGSIPASVQVLTGITDVMVR 127

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLW 107
             P +  V+P    +  S   VAHNA FD   L     +          + T+ LAR + 
Sbjct: 128 SAPSLNAVLPSWSEFSRSTALVAHNARFDIGFLQRAYAQHDYPWDDPAVVDTLALARSVL 187

Query: 108 P--GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQM 161
               ++   ++                 HRAL D   T  +L  +++  G     T E +
Sbjct: 188 ARGEVRNYKLSTLSRL----FHTTTTPSHRALADARATVDVLHGLIDRVGNLGVTTLEDL 243

Query: 162 ADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYL 195
            ++T R            +     D+ E+   Y 
Sbjct: 244 LEMTHRVPQARRRRRVWAK-----DLPEKSGVYW 272


>UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class)
           RepID=B9KXM0_THERP
          Length = 693

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 28/217 (12%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET GL+     I+EI +V   DG  V   S LV P R +    + +  I +  +
Sbjct: 86  FVALDVETTGLRPARHRIIEIGAVRYEDGCCVERFSVLVNPHRRLPVYIVRLTGIRDEDL 145

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
              P   DV      + G    + +N  FD   L           +P   +  + LAR L
Sbjct: 146 LTAPSFVDVAAAFRVFLGESTVIGYNVGFDLDFLNAELRRIGQGPLPNPALDVLPLARAL 205

Query: 107 WP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW-TAEQMADI 164
                +Y   A+ ++  L          HRAL D   TA L + ++  +        +D+
Sbjct: 206 LTANGRYDLDAICRSIGLA-----RGTRHRALPDAEATAVLYLHLVERAEQVGYRSPSDL 260

Query: 165 TGRPSLMTTFTFGKYRGKA------VSDVAERDPGYL 195
               +  T       RG+A      ++D  E    YL
Sbjct: 261 QPAATRRTIVVEPVARGRAVLDQRLLADTPELPGVYL 297


>UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Dethiosulfovibrio peptidovorans DSM 11002
           RepID=C1TRP3_9BACT
          Length = 193

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 23/181 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET GL      IVEI ++    G         V P RPI  +A+AIH IT+ MV
Sbjct: 10  FVAIDVETTGLSNRWDRIVEIGAIRFTPGSETESFQTFVSPGRPIPSEAVAIHGITDEMV 69

Query: 59  ADKPWIED---VIPHYYGS-EWYVAHNASFDRRVLPEMPG---------EWICTMKLARR 105
              P + +    +  +    E  V HN SFD   L                  T  LAR+
Sbjct: 70  EGAPGLSEASIALASFLKDEEPMVFHNPSFDLGFLDANMRAIKGSWNVMPVFDTCGLARK 129

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMAD 163
            +PGIK YS +AL +   L+     G  HHRAL DC  +A+L   I+    G+    + D
Sbjct: 130 AFPGIKGYSLVALARHFGLS-----GGGHHRALEDCRYSASLFNLILEAIDGFRCMSLKD 184

Query: 164 I 164
           +
Sbjct: 185 L 185


>UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KR66_CLOPH
          Length = 235

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 30/214 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID E+ GL      I+EIA++  IDGK       L+ P  P+  +   +  ITE M+
Sbjct: 3   FLAIDIESTGLSPEKDRIIEIAAIRYIDGKPKERFEKLINPGCPLPERITELTGITEDML 62

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRLW 107
           A      +VI  +    G +  + HN S D   +             + I T+ L+R L 
Sbjct: 63  AGAMTEREVIKEFLTFAGEDVLLGHNVSVDFSFIKTAADRLKIGYERQGIDTLYLSRTLK 122

Query: 108 PGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
             + K +  ++ +   +  +       HRAL D    A L   +        E +     
Sbjct: 123 SDLEKKNLESMCEHYGIIRECS-----HRALEDAIAAATLYQKLYEEFNNNFEALFLPVE 177

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
                      KY+ K    + E+   YL  L N
Sbjct: 178 L----------KYKVKKQEPMTEKQKKYLLDLVN 201


>UniRef50_Q0C6A4 DNA polymerase III, epsilon subunit n=2 Tax=Alphaproteobacteria
           RepID=Q0C6A4_HYPNA
          Length = 232

 Score =  169 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57
              DTET GL       I+EI +V++I+          L+ P   +S   + I  IT+  
Sbjct: 8   IAFDTETTGLNPNEGDRIIEIGAVEMINHIPTGKTFRRLINPGMAVSEATIRITGITDDH 67

Query: 58  VADKPWIE-----DVIPHYYGSEWYVAHNASFDRRVLPE----------MPGEWICTMKL 102
           + DKP  E     D    + G    VAHNASFDR  L                W+ T+++
Sbjct: 68  LRDKPPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRDIIPEDRWVDTVQM 127

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           AR+ +PG   S  AL K   +++++      H AL D  + A++ ++++
Sbjct: 128 ARKRYPGAPASLDALCKRFDISLESRT---FHGALLDSQLLASVYLELL 173


>UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA
          Length = 929

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 26/192 (13%)

Query: 2   LRIIDTETCG----LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D E  G        I++I    V +GKIV+     V P RPI      +  IT+  
Sbjct: 6   YAVVDLEMTGSDFDGDNRIIQIGCAFVENGKIVDTFQSKVNPQRPIPAGITKLTGITDEQ 65

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V + P   D++   Y       +VAHN  FD   L         PE+    + T+ L++ 
Sbjct: 66  VQNAPKFNDIVDEVYRKLVDTVFVAHNVEFDFPFLNQELVRSGYPELNIPAVDTVSLSQI 125

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           ++   K Y    L    K+          H A  D   TA LLI I          T E+
Sbjct: 126 VFSFTKGYRLRDLTSYLKIEHD-----DPHSADSDAIATANLLIAIKKNLQQLPIVTLER 180

Query: 161 MADITGRPSLMT 172
           + ++       T
Sbjct: 181 LVELGKDLPRQT 192


>UniRef50_Q4ZNE2 DNA polymerase III, epsilon subunit n=6 Tax=Pseudomonas syringae
           group RepID=Q4ZNE2_PSEU2
          Length = 204

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 25/202 (12%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + +ID ET G+         EIA V +  G+IV     L+     I      +  I+  M
Sbjct: 5   IAVIDFETTGISPGHSCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNM 64

Query: 58  VADKPWIEDVI---PHYYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRL 106
           +   P  E V+     + GS   VAHNASFD++                + C++ LARRL
Sbjct: 65  IRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRTREQSFACSLLLARRL 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT-------AE 159
            PG     +          + P     HRA+ D  + A L   + N    T        +
Sbjct: 125 MPGAPNHKLGTLTRY---ARLPDTGKAHRAMADAEMAANLTAHLTNELRQTHGISAISHQ 181

Query: 160 QMADITGRPSLMTTFTFGKYRG 181
            +  +   P+   + T  + RG
Sbjct: 182 MLCSLQKVPAAKISETLKRQRG 203


>UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom
           phytoplasma RepID=Q83YZ1_PEWBP
          Length = 1492

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 31/216 (14%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP--ISPQAMAIHRITEA 56
             ++D ET G       I+ IA+V + +GKI+     L+ P +   IS     +  I++ 
Sbjct: 405 YVVLDIETTGFSKTRDRIISIAAVKIQNGKIIEYFDELINPGKDIKISNLIQRLTNISDE 464

Query: 57  MVADKPWIEDVIPHYYG------SEWYVAHNASFDRRVLPE---------MPGEWICTMK 101
           ++ +KP I++++  +        +   VAHNASFD   L E              I T+ 
Sbjct: 465 ILLNKPHIKEILSKFLDFIRDCPNCVLVAHNASFDIEFLQETFKNIGLYWPLLPVIDTLT 524

Query: 102 LARRLWPG-IKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTA 158
           LA++ +   +KY S   + K+ K+ +       +H AL+D   TA + ++++        
Sbjct: 525 LAQKYFNKILKYFSLEKIVKSFKIKLD--SEGQYHNALFDARATALIFLEMLEQLEAQKI 582

Query: 159 EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGY 194
               D+ G   +     +       V+ + +   GY
Sbjct: 583 FNFYDLQGSLDIKFERPY------HVNIIVKNKKGY 612


>UniRef50_C2M5F0 DNA polymerase III, epsilon subunit n=1 Tax=Capnocytophaga
           gingivalis ATCC 33624 RepID=C2M5F0_CAPGI
          Length = 453

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 20/168 (11%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           M  IID ET G +     I EIA       K+ +    L+ P++ I    + +  I+   
Sbjct: 1   MYAIIDIETTGGKMGEEAITEIAIYRFDGQKVTDRFISLINPEKKIDDFVVRLTGISNKT 60

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL----PEMPGEW----ICTMKLARRL 106
           V   P   +V             VAHNASFD RVL      +  ++    +CT+++++RL
Sbjct: 61  VRQAPKFYEVAKRIVEITEDCILVAHNASFDYRVLSLEFRRLGFDYQRSTLCTVEMSQRL 120

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
            P    YS   L ++  +     P L+ HRA  D   T  L   +++ 
Sbjct: 121 LPDEPSYSLGKLTRSLGI-----PLLNRHRANGDAMATVHLFKLLLDR 163


>UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class)
           RepID=A5UUI5_ROSS1
          Length = 956

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 18/217 (8%)

Query: 1   MLRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +   ID ET GL+     I+EIA+V     +++   S LV+P   +   +  +  IT  M
Sbjct: 4   IYIAIDVETTGLEAGVDEIIEIAAVKFNADEVLETFSTLVQPVHSLPLNSSRLTGITADM 63

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----EMPGEWICTMKLARRLWPGI 110
           +A  P   +V P    +  +   V HN  FD R+L      +P     T +LA  L P  
Sbjct: 64  LASAPRFAEVAPRFAAFLKNYPLVGHNVEFDLRMLRAQGMRLPQPAFDTFELATLLMPRT 123

Query: 111 K-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPS 169
             Y   AL  T  ++         HRAL D  +T  + + ++      A  + D+     
Sbjct: 124 PAYRLSALAATLGIHHD-----EAHRALSDADVTRQIFLYLLRRIE--ALPLDDLNEIMR 176

Query: 170 LMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206
           L +   +G       +  A+    ++  +    D   
Sbjct: 177 LTSQIEWGLRSLFEEAQRAKARRVFVDAIPIQADRYD 213


>UniRef50_Q1YU82 DNA polymerase III, epsilon subunit n=1 Tax=gamma proteobacterium
           HTCC2207 RepID=Q1YU82_9GAMM
          Length = 528

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 3   RIIDTETCG---LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            ++D ET G       I+EI  + +  GK++      V P+  + P    +  I  +M+ 
Sbjct: 25  VLLDLETTGGKATHHRIIEIGLLVIEQGKVLERWQSFVDPETVLPPFIQKLTGIAPSMLR 84

Query: 60  DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEMPGEW--------ICTMKLARRLWP 108
             P   +V             VAHNA FD   L               +C++K +R L+P
Sbjct: 85  GAPLFSEVAETLLTYLNDRTLVAHNARFDYGFLKNEFQRIGISYNAKPLCSVKFSRSLYP 144

Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMA 162
             K      + K  +L     P  + HRAL D  +     +           G T   + 
Sbjct: 145 QFKRHGLDQIIKRFQL-----PIENRHRALDDAEMIQRFFLKSSALFSDEEIGATCASLL 199

Query: 163 DITGRPSLMTTFTFGKYRGKA 183
                P L+      K    A
Sbjct: 200 KNPALPPLLKASDIKKLPASA 220


>UniRef50_B9D3Q4 Mature parasite-infected erythrocyte surface antigen n=1
           Tax=Campylobacter rectus RM3267 RepID=B9D3Q4_WOLRE
          Length = 289

 Score =  169 bits (428), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D ET G    G I+EI ++ + +G+I+      V     +      +  IT   +
Sbjct: 72  IFCVVDIETSGGINSGQIIEIGALKLQNGEIIGKFETFVHAP-YVPENISELTGITAEHL 130

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKLARRL 106
            + P +  V+  +    G   +VAHN  FD   +          E+    +CT+ LARR 
Sbjct: 131 KNAPNLAFVMEKFKVFLGQSVFVAHNVRFDYGFIGATLEALGYGELLNHRLCTIDLARRT 190

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163
               KY    L +   +N        HHRAL D    A +    +        T E + +
Sbjct: 191 IASPKYGLGTLKEILGINNA------HHRALSDAIAAAEIFKYSLQKLPSEVKTTEDLIE 244

Query: 164 ITGRPSLMTTF 174
            +     M   
Sbjct: 245 FSKSAKTMKQL 255


>UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FTI9_9FIRM
          Length = 828

 Score =  168 bits (427), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 21/169 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET G        I++I +V + DG+++   S L+ P+R I     AI  I    
Sbjct: 8   IAVVDLETTGSHLDQGDQIIQIGAVLIEDGQVLAQHSMLLNPERNIPTHITAITGIQSDQ 67

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           V D P    V           ++VAHN  FD   L               + T++LA+  
Sbjct: 68  VQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLDFQPPALDTVQLAKIF 127

Query: 107 WPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
            P    ++   L +   LN Q       H AL D  +TA LL  + + +
Sbjct: 128 LPQAPGFNLQDLSQFFGLNFQ-----DAHDALGDARMTAHLLDVLAHQA 171


>UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23
           RepID=B7A7U0_THEAQ
          Length = 627

 Score =  168 bits (427), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 1   MLRIIDTETCGLQGG---IVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
           +    D ET GL      I+ + +V ++  +++       LV P RPI   +  +H +T 
Sbjct: 442 LYTAFDLETTGLDPREDAIIALGAVHLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLTW 501

Query: 56  AMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM---PGEWICTMKLARRLWPG 109
            M+ DKP +E+V+P    +      VAHN +FD   L ++       + T+ LA  L+P 
Sbjct: 502 EMLKDKPKLEEVLPAFRAFLEGSVLVAHNGAFDMAFLRKVGIDQPPLVDTLLLAHLLFPD 561

Query: 110 IKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           +K   +  L +   +     P L  H AL D  +TA +   ++     
Sbjct: 562 LKDHRLERLAERFGV-----PVLGRHTALGDALMTAEVYARMIPLLKE 604


>UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EF57_9CLOT
          Length = 319

 Score =  168 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 27/208 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             +ID ET G       I+E+ ++ + +G++V   S L +P R +    + +  I+  M+
Sbjct: 22  YVVIDLETTGYDPHRDEIIELGALRIHEGEVVESFSSLTKPQRDLDDYIIQLTGISNEML 81

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
           A  P + DV P    + G    V HN  FD            L     + +  + L+R+L
Sbjct: 82  ASAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTNDLVDLLWLSRKL 141

Query: 107 WPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
            P +    +  +     + V+       HR+L+DC  T          +     Q+ +++
Sbjct: 142 LPDLTSHKLCRVSSHFNICVEGM-----HRSLFDCKTTFECFEKCRILAKERYGQVDNLS 196

Query: 166 G--RPSLMTTFTFGKYRGKAVSDVAERD 191
              RP   T       + KA   + E D
Sbjct: 197 QVFRPIKRTPCP----KLKACDILPECD 220


>UniRef50_A5LFK6 DNA polymerase III subunit epsilon n=4 Tax=Streptococcus pneumoniae
           RepID=A5LFK6_STRPN
          Length = 307

 Score =  168 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 25/209 (11%)

Query: 2   LRIIDTETCG-LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET    +G +  I  V   DG IV+    L+ P+       + IH IT   V D
Sbjct: 5   YVALDVETANDFRGSVCSIGLVKFKDGNIVDTFYTLINPEEEFDDFNIFIHGITPEDVLD 64

Query: 61  KPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108
            P   +V   I  + G +  VAH A FD   L ++  +         +IC+ +LA+   P
Sbjct: 65  SPTFPEVRKSIVDFIGLDIVVAHFAQFDMGALKDVYQKYELDFDNIEYICSYRLAKVALP 124

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT--- 165
           G     +     ++L       L HH AL D   +  +L  +++T+ ++   +       
Sbjct: 125 GQLNYKL-----KRLAKNLNIELDHHNALSDARASGLILEYLLSTNSFS--DLTAFLKEY 177

Query: 166 --GRPSLMTTFTFGKYRGKAVSDVAERDP 192
              +  L+  + F + +G    +     P
Sbjct: 178 RYNKTGLLGQYGFKRKKGYQYKENLIYQP 206


>UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1
           Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD
          Length = 1043

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 81/195 (41%), Gaps = 22/195 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + +IDTET G+      + +IA+  +++GKIV+     V P RPI  +   +  I E+ V
Sbjct: 37  IVVIDTETTGISFVRDELTQIAAARMVEGKIVDWFVTFVNPGRPIPEEISHLTSIYESDV 96

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMP-------GEWICTMKLARRLWP 108
           AD P  E+    +  + G    VAHNA+FD+    +           WI ++ LAR   P
Sbjct: 97  ADAPSPEEAVFQLVDFVGESCLVAHNAAFDKHFCTKPATGESLTHNIWIDSLDLARIALP 156

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD----I 164
            +K   +       L       L  HRA  D     A+   ++      ++ + D    +
Sbjct: 157 RLKSHRL-----LDLVRAFDAPLSTHRADADVEALCAVFRILLAAVDAMSQGLIDEIAAM 211

Query: 165 TGRPSLMTTFTFGKY 179
                  T   F ++
Sbjct: 212 ATEEEWPTVHVFKQF 226


>UniRef50_C4Z5K4 DNA polymerase III subunit alpha, the Gram-positive type n=16
           Tax=Bacteria RepID=C4Z5K4_EUBE2
          Length = 1513

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 18/209 (8%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET G       I+EI +V V +G+IV+  S  V P+ PI  +   +  I + MV
Sbjct: 473 YVVFDLETTGFSAEVDRIIEIGAVKVCNGEIVDRFSTFVNPEIPIPFRIETLTHINDQMV 532

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRLW 107
            + P IE+++P +         VAHNA FD   +          +    I T+ LA+ L 
Sbjct: 533 MNAPKIEEILPEFLEFCEGAVMVAHNAEFDTSFIINKAEKIGINVDTTIIDTVLLAQFLM 592

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
           P +    +     + LNV       HHRA+ D   TA + + ++           D    
Sbjct: 593 PNLHNYKLDTLT-KHLNVVLES---HHRAVDDAAATADIFVKMIKMLYDRDIPDVDKLNE 648

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLR 196
              M      K        +A  + G + 
Sbjct: 649 EGKMDENAIKKLHQYHCIILASNEMGRIN 677


>UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema
           RepID=Q73L66_TREDE
          Length = 217

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 21/183 (11%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +    DTET G +     +VEI  V      ++   + L+ P++P+ P+A  +++IT+ M
Sbjct: 15  VFTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPEKPMPPEAGKVNQITDEM 74

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP---------EMPGEWICTMKLARR 105
           +A +P   +V+P +     +   VAHNASFD   +          ++  +   T+  AR 
Sbjct: 75  LAGQPKFAEVLPDFLDFIRNTVLVAHNASFDINFINCELERCGKTKLTNKVFDTLTFARE 134

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
             PG+  Y+   L     +       ++ HRA  D  +        ++      + M D 
Sbjct: 135 TLPGLQSYALQNLATQFGVQA-----VNAHRAEDDARVCMEFFKIAVSHFFEKNKDMLDY 189

Query: 165 TGR 167
             +
Sbjct: 190 YKK 192


>UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK
          Length = 801

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 22/172 (12%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G      G I++I    + + +I++     V P +PI      +  I++  
Sbjct: 7   FVVVDLETTGQSVAKGGRIIQIGMTFIKNRRIIDHFESFVNPAQPIDRNIQQLTHISQKE 66

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V + P+ E++ P   +       +AHN +FD   L         PE+    I T++LA+ 
Sbjct: 67  VKNAPYFEEIAPVIQNLLTDTVIIAHNVNFDYPYLNDEFARTGFPELTNAAIDTVQLAQI 126

Query: 106 LWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           L P    Y  + L     + +      + HRA  D + TA L + +   +  
Sbjct: 127 LLPTAPGYRLLDLTTYLNITL-----NNAHRANADAHATALLFLSLWQRAEQ 173


>UniRef50_C0GHD8 DNA polymerase III, epsilon subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GHD8_9FIRM
          Length = 269

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 2   LRIIDTETCGL----QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITE 55
             I DTET G        I+ IA+V + +G+I        LV P R I      +  IT+
Sbjct: 78  YIIFDTETTGFYPYQGDEIINIAAVVIENGEIKEDQIFDELVNPHRSIPQAVCDLTGITD 137

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP---------EMPGEWICTMKLA 103
            MVADK  I  V+  +    G    VAHNA FD   L          E+    I T KL 
Sbjct: 138 DMVADKCGICSVLSDFLDFIGDSVLVAHNAEFDLAFLNIKLNWYTQTEIYNPVIDTYKLG 197

Query: 104 RRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           R L+P +   ++                  H AL D  +TA + +D +      
Sbjct: 198 RALYPQLLSHDLDTLIRHH----RVKERPRHTALGDSLMTAEIFLDYLKKLEKE 247


>UniRef50_Q1J4M0 DNA polymerase III polC-type n=135 Tax=Bacteria RepID=DPO3_STRPF
          Length = 1465

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 26/217 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      +++IA+  +  G IV      + P  P+S     +  IT+  +
Sbjct: 427 YVVFDVETTGLSAMNNDLIQIAASKMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHL 486

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
                +  V+     +      VAHNASFD            LP++    I T++ AR L
Sbjct: 487 QGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNL 546

Query: 107 WPGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN--TSGWTAEQMAD 163
           +P  K   +  L K  ++++      HHH A YD   T  LL   +         + +  
Sbjct: 547 YPEYKRHGLGPLTKRFQVSLD-----HHHMANYDAEATGRLLFIFLKDAREKHGIKNLLQ 601

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
           +     L+   ++ K R K  +   +   G L+ +F 
Sbjct: 602 L--NTDLVAEDSYKKARIKHATIYVQNQVG-LKNMFK 635


>UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus
           RepID=C6CUG6_PAESJ
          Length = 953

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 21/171 (12%)

Query: 2   LRIIDTETCG--LQGGIVEIASVDVIDG-KIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G  +   I+++    + D  +IV   S  VRP   I      +  I   MV
Sbjct: 3   FAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDADMV 62

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           AD P +++V+            VAHN +FD   L +           G  + T++L R L
Sbjct: 63  ADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTIELLRIL 122

Query: 107 WPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           +P I  Y   A+ +   +         HHRA  D   TA L    +     
Sbjct: 123 YPSITTYQLGAVTELFGIAHD-----QHHRADSDAIATAELFAQSVQKLRQ 168


>UniRef50_B9KCR0 DNA polymerase III, epsilon subunit n=14 Tax=Campylobacter
           RepID=B9KCR0_CAMLR
          Length = 254

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 24/186 (12%)

Query: 1   MLRIIDTETCGL--QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           +  ++D E+ G    G I+EI +V + + K ++     V+ +  I      +  I+  MV
Sbjct: 71  IFCVVDIESTGGIKSGQILEIGAVKIQNYKEIDRFESFVKVE-SIPENITELTGISLDMV 129

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
            + P ++ V+ +   +     +VAHN  FD   + +         +    +CT+ LA++ 
Sbjct: 130 ENAPSLKTVLNNFKLFLKDSIFVAHNVRFDYHFISKAMYENDFGVLLNRRLCTIDLAKKC 189

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG---WTAEQMAD 163
               KY   AL +   +         HHRAL D    + +L   +          E++  
Sbjct: 190 IESPKYGLDALKEFLCIE------SKHHRALSDALAASEILKYCLKKIPFYIKNTEELLH 243

Query: 164 ITGRPS 169
            + +  
Sbjct: 244 FSKQAK 249


>UniRef50_Q9JYS6 DNA polymerase III, epsilon subunit n=31 Tax=Neisseria
           RepID=Q9JYS6_NEIMB
          Length = 470

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++D E+ G       + E+A V    G++V     LV P +PI      +  I++ MV
Sbjct: 30  VAVVDLESTGGNLYEDRVTEVALVKFEQGRVV-RHEWLVNPQKPIPQFVAGLTGISDGMV 88

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           AD P   ++             VAHN+ FD   L               +C+++L+R L+
Sbjct: 89  ADAPVFAEIAGELFSVLKGCVLVAHNSRFDYTFLKHEFHRAGIGFSSPALCSVQLSRCLY 148

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   K+S  ++ +   + V+       HRA+ D       L   ++  G   E       
Sbjct: 149 PQFYKHSLDSIIERLGIVVE-----DRHRAMADVSALCDYLEYSLSEHG--VEAWIRQCF 201

Query: 167 RPSLMTTFT 175
           R        
Sbjct: 202 RLMNPKPLP 210


>UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
           epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI
          Length = 914

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 26/181 (14%)

Query: 6   DTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADK 61
           D ET G        +++IA V + D +I    +  + P + I      +  IT   V D 
Sbjct: 2   DLETTGHSPANGDRMIQIAIVIMKDWEIERTYTKFINPGKAIPSFIQDLTHITNEDVKDS 61

Query: 62  PWIED---VIPHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLWP- 108
              E+    I        +VAHNA FD            LP+  G+ + T++LA+ L+P 
Sbjct: 62  YPFEEHADYIYELLADCVFVAHNADFDLSFLQAEFKRAGLPKWQGKKMDTVELAKILFPM 121

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL----IDIMNTSGWTAEQMADI 164
            + +    L     + +      + HRA  D   TA L      +++N    T EQM   
Sbjct: 122 SLGFKLGDLAADLNIELA-----NAHRADDDARATAELFKCCWKELLNLPQLTLEQMHKR 176

Query: 165 T 165
           +
Sbjct: 177 S 177


>UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1
           Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT
          Length = 939

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 26/197 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D ET G        +++   V +   ++V+  +  + P   I  Q   +  ++   
Sbjct: 7   YAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFATNINPLTSIPKQIEHLTGLSNKT 66

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           VA  P+ ED+     +       +AHN  FD   L         P +  + I T++LA+ 
Sbjct: 67  VAQAPYFEDIAATIYNLLDGCIIIAHNIQFDYTFLSAELQRCGMPALQNKGIDTVELAQV 126

Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQ 160
           L P    Y    L     +        + H+A  D  +TA L + +          T E+
Sbjct: 127 LLPTESSYRLNDLVSKFNIE-----HTNPHQADSDAAVTAELFLVLKQKLKELPLVTVEK 181

Query: 161 MADITGRPSLMTTFTFG 177
           M +++   ++ T + F 
Sbjct: 182 MVELSVNLTMETAYFFK 198


>UniRef50_A1K1I0 DNA-directed DNA polymerase n=20 Tax=Proteobacteria
           RepID=A1K1I0_AZOSB
          Length = 231

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             +ID ET G+         EIA V V +G +++    L+     +  +  A+  IT AM
Sbjct: 31  YAVIDFETTGMAPEHGARPTEIAVVLVRNGCVIDRYQSLMNAGVHVPYEIQALTGITNAM 90

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL--------PEMPGEWICTMKLARRL 106
           V   P +  V      + GS   VAHNA+FDR+               +++C++ L+RR+
Sbjct: 91  VRAAPPLAQVMAQAADFVGSHALVAHNAAFDRKFWDAELDRLGRRREADFVCSLLLSRRV 150

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +P      +         +  P     HRAL D   TA L   I +T 
Sbjct: 151 FPDSPNHKLGTLVR---TLGLPASGRFHRALADAEATAQLFARIAHTL 195


>UniRef50_A0K8A7 DNA polymerase III, epsilon subunit n=11 Tax=Burkholderia cepacia
           complex RepID=A0K8A7_BURCH
          Length = 212

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           + ++D ET GL         EIA + + +G++V+    L+   R I    +A+  IT  M
Sbjct: 11  VAVLDFETTGLSPNLGDRATEIAVILLRNGQVVDRFQSLMNAGRRIPSDVVALTGITNDM 70

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEM--------PGEWICTMKLARRL 106
           +A  P   +V+     + G    VAHNA FD+R                + CTM +ARR+
Sbjct: 71  IATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHAFACTMLVARRI 130

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
           +P  +   ++        ++ P     HRA+ D  +   L   +      T
Sbjct: 131 YPDARSHRLSSLAEM---LRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRT 178


>UniRef50_B5EMD9 DNA polymerase III, epsilon subunit n=3 Tax=Acidithiobacillus
           RepID=B5EMD9_ACIF5
          Length = 248

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 20/219 (9%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNPM-SHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G+       ++EI +V++ID ++        + P R   P+A+ IH +T+  
Sbjct: 6   VVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTDEF 65

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARR 105
           + D+P   +V      + G    + HNA FD   L           +    + T+  ARR
Sbjct: 66  LQDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQAVMDTLADARR 125

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADIT 165
             PG K    +L +   +          H AL D  I A + + +          +    
Sbjct: 126 RHPGQKNDLNSLCRRYSVENSHREL---HGALLDTRILAEVYLAMTGGQVDMMGMLGAAG 182

Query: 166 GRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDS 204
           G  +          R + +     R  G LR +  + + 
Sbjct: 183 GSAATEMRSAGDDRRSEGIPAALSRPRGPLRVIRASAEE 221


>UniRef50_C5VCF0 Exonuclease family protein n=2 Tax=Corynebacterium matruchotii
            RepID=C5VCF0_9CORY
          Length = 2479

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 88/238 (36%), Gaps = 35/238 (14%)

Query: 2    LRIIDTETCGLQ--GGIVEIASVDVID-GKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ++D ET G      IVE+A V + D G+ +   S L+ P R IS  A  IH IT   V
Sbjct: 2085 YAVVDVETTGFSTADRIVELAIVVLDDDGENLYEWSTLINPMRDISNGA--IHGITAKDV 2142

Query: 59   ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGEW-----------ICTMKLAR 104
            A  P  + V          + +VAHNA FD R+L                  I T++LA+
Sbjct: 2143 AVAPTFDQVADDVAALLEGKIFVAHNAIFDVRMLKSEFDRVGLKMAGLADGHIDTLRLAQ 2202

Query: 105  RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
               P    S  +      +  +       H AL D   T  LL   +      + Q   +
Sbjct: 2203 NSLPISSRSLDSCLAFMGITNE-----QAHSALSDARATGRLLTRFLLDELPNSAQSVSV 2257

Query: 165  TGRPSLM--TTFTFGKYRGKAVSDVAERDPGYLR--WLFNNLDSMSPELRLTLKHYLE 218
            TG         +  G       ++  ER   Y+   WL   +D M     +    YLE
Sbjct: 2258 TGDAMQPSREVYPLG-------TETMERGNSYMNDDWLSAAIDEMPSSGNVDTDSYLE 2308


>UniRef50_B3DQ35 DNA polymerase III alpha subunit n=6 Tax=Bifidobacterium longum
           RepID=B3DQ35_BIFLD
          Length = 235

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 28/172 (16%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              +D ET G       I EI +V V +G IV+    LV P RPI  Q   +  IT+AMV
Sbjct: 34  YVALDLETTGFYPNSCAITEIGAVRVREGHIVDQFQQLVNPLRPIPRQITTLTGITDAMV 93

Query: 59  ADKPWIEDVIPHYY----------GSEWYVAHNASFDRRVLPEMPGEW---------ICT 99
           AD   I++V+P +             E  V HN SFD R L                  T
Sbjct: 94  ADLDPIDEVLPRFIAWLATPAAGPAVEPIVGHNVSFDLRFLDYNTRHIAGCGFACADYDT 153

Query: 100 MKLARRLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           M+++R L+P  ++  +  L     +          HRAL D   T      +
Sbjct: 154 MQISRALFPAQRHHRLADLIVRFGIA-----DNEEHRALSDAIQTQQCFEWM 200


>UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium
           adolescentis L2-32 RepID=A7A526_BIFAD
          Length = 256

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 22/166 (13%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
              ID ET G       IVEI ++ V +G+ V   S L+ P RP+  +   ++ +T+A +
Sbjct: 86  YTSIDLETTGFSPSDDRIVEIGAIRVRNGRPVKRYSQLINPQRPLPEEITRLNGLTDADL 145

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNAS-FDRRVL---------PEMPGEWICTMKLARR 105
            ++P ++ V+P    + G++  + HN + FD   L           +  + I T+ L R 
Sbjct: 146 RNQPTVDQVLPDFIRFIGNDTLIGHNINEFDAAFLLANTTRLGMRHIGNKTIDTLPLDRA 205

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           L+P      +  + +   +          HRA  D   TA     +
Sbjct: 206 LYPEEPKHRLVDIIRRFGIA-----QTESHRAADDALQTAQCYETM 246


>UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM
           2243 RepID=C8WPW0_EGGLE
          Length = 966

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 20/175 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET G       + +IA+  +  G+IV      V P +PI      +  I +  V
Sbjct: 10  VVVLDTETTGFSFNHDELTQIAAARMEQGEIVEWFITFVNPGKPIPEDVAHLTDIHDRDV 69

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL-------PEMPGEWICTMKLARRLWP 108
           AD P   D +     + G    VAHNA FDR          P +   WI ++ LAR   P
Sbjct: 70  ADAPLPADALAKLVEFIGDAKVVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALP 129

Query: 109 GIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMA 162
            +K    + L +           L  HRA  D   T A+   ++         + 
Sbjct: 130 RMKSHRLLDLVRAFG------APLSTHRADADVEATCAIFRILLAGVAAMPPALV 178


>UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis
           ATCC BAA-548 RepID=D1N2X3_9BACT
          Length = 185

 Score =  166 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET G+      IVE+A+V V     ++    LV P   I  QA+A+H IT+ MV
Sbjct: 9   FTIFDVETTGMSPVRDRIVELAAVRVDRDGSLSRFQSLVNPGVRIPAQAVAVHHITDDMV 68

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
           A  P    +      +      VAHNA FD   L E           G+ + +++L +  
Sbjct: 69  AGAPSFARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGKTLDSLRLLKTT 128

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
           +P +   N+   +     ++T  G++ HRA  D   T  +L   ++ +
Sbjct: 129 FPNLPSYNLQSLRAY-FQLETEKGMNAHRAGADVEWTRQVLEIALSKA 175


>UniRef50_Q89AN3 DNA polymerase III subunit epsilon n=4 Tax=Buchnera aphidicola
           RepID=DPO3E_BUCBP
          Length = 245

 Score =  166 bits (422), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 33/229 (14%)

Query: 3   RIIDTETCGLQG--------GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRI 53
            ++D ET G+           I+EI +V++I+           ++P+R I  Q+  IH I
Sbjct: 8   IVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIHGI 67

Query: 54  TEAMVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG-------------EWI 97
           T+  + DKP   ++      Y  +   + HNA FD   +                    +
Sbjct: 68  TDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCNVV 127

Query: 98  CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWT 157
            T+ LAR+L+PG K S  AL    K+NV        H AL D  + A +   + +     
Sbjct: 128 DTLPLARQLFPGKKNSLDALCNRYKINVSHR---DFHSALIDAKLLAKVYTFMTSFQQSI 184

Query: 158 A-----EQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNN 201
           +       +  I     L +   F      A  D  ++   YL+++   
Sbjct: 185 SIFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYVKQE 233


>UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria
           RepID=Q1GL30_SILST
          Length = 479

 Score =  166 bits (421), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 80/191 (41%), Gaps = 21/191 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56
             + DTET GL      IVE+A+  V++G+I++       V P RPI   +  IH + +A
Sbjct: 273 FVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDPGRPIPAASTKIHGVRDA 332

Query: 57  MVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105
            VA  P IE VIP    +  S   VAHNA FD  +L +             + T+ L+  
Sbjct: 333 DVAQSPRIEAVIPAFHDFAQSAVLVAHNAPFDIGLLRQQEVQTGCSWDHPVVDTVLLSAL 392

Query: 106 LWP-GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQMAD 163
           ++     +S  AL     + +   P  H H A  D   TA  LI ++    G   E    
Sbjct: 393 VFGISADHSLDALCSRLSIEI---PARHRHTAKGDARATAEALIRLLPLLQGKGIETFGQ 449

Query: 164 ITGRPSLMTTF 174
           +    S     
Sbjct: 450 LLKETSKFGRL 460


>UniRef50_A1ARI3 DNA-directed DNA polymerase n=2 Tax=Desulfuromonadales
           RepID=A1ARI3_PELPD
          Length = 170

 Score =  166 bits (421), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)

Query: 2   LRIIDTETCGLQGG----IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           L ++D ET GL       ++E+A+V + +GK+V  +  L+R +  I P A  +H I   M
Sbjct: 5   LAVVDVETSGLSPRGGGRVIEVAAVLLREGKVVGELESLLRVNCSIHPAAARVHGIGWEM 64

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRL 106
           +   P  EDV   +    G    VAHNA FD   +          +    ICT+++ARR 
Sbjct: 65  LRHAPEPEDVWRRFLSFVGRRPLVAHNAPFDMGFIRHELALLGLPLANRSICTLRMARRR 124

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           +P +    +       L    P     HRAL D  + A + + +
Sbjct: 125 FPELASHRLEALARHLLG-SIPEDCRLHRALGDARLAARVWLAM 167


>UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum
           RepID=DPO3E_TREPA
          Length = 215

 Score =  166 bits (421), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               DTET GL+     I+EI +V      I+   S L+ PDR I P    I+ IT+ M+
Sbjct: 15  FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIFPDRAIPPDVSKINHITDDML 74

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRL 106
            +KP   ++      +      VAHNA+FD   L           +  + + T  +A+ +
Sbjct: 75  VNKPRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAV 134

Query: 107 WPGIKYS---NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
           +PG+         L     L V        HRA  D  +   L   ++           +
Sbjct: 135 FPGLGRHQYRLQNLALQFGLTVHA-----AHRAEDDARVCMELFTTMIAHHAKQNGHCVN 189

Query: 164 ITGRPSLMT 172
               P++  
Sbjct: 190 HAQSPTIKK 198


>UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella
           RepID=C4FB13_9ACTN
          Length = 977

 Score =  165 bits (420), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 17/162 (10%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET GL      ++EIA+  +   +IV+     V+P   I  +   +  IT   V
Sbjct: 47  VIVLDTETTGLSHRDSELIEIAAARLRGREIVDRFDTFVKPSGLIPEEITKLTSITNVDV 106

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPGE------WICTMKLARRLWPG 109
           A  P   D    +  + G    VAHNA+FDR  + ++PG       WI ++ L+R   P 
Sbjct: 107 AHAPSAVDAVASLAEFVGGCPVVAHNAAFDRGFIEQVPGGADVSDIWIDSLALSRIALPR 166

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +    +A+                HRA  D      +   ++
Sbjct: 167 LASHKLAVMAEL-----FGCESVSHRANADVEALCGVWRILL 203


>UniRef50_B3CMS2 DNA polymerase III, epsilon subunit n=8 Tax=Wolbachia
           RepID=B3CMS2_WOLPP
          Length = 234

 Score =  165 bits (420), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 26/201 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVN-PMSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET GL       I+EI  V++I+           + P+R I   +  IH I+E  
Sbjct: 8   IVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEF 67

Query: 58  VADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104
           + DKP   DV   +     ++  V HNA FD + L    G            + T+ LAR
Sbjct: 68  LEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLAR 127

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           + + G   S  AL K   ++++       H AL D  + A + +++         Q    
Sbjct: 128 KKFVGSPASLNALCKRFDISLEGREL---HGALVDAQLLAKVYVELTGGL-----QTFLF 179

Query: 165 TGRPSLMTTFTFGKYRGKAVS 185
               +     TF +++ + ++
Sbjct: 180 NNECAQDNNSTFIQHKVRNLA 200


>UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus
           RepID=Q6MGT7_BDEBA
          Length = 217

 Score =  165 bits (420), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 24/189 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET G       IVEI +V  IDG+     + L+ P RPI P A A++ I++ MV
Sbjct: 15  FIAFDLETTGTVPGVDQIVEIGAVRFIDGQPEAIFATLIDPLRPIPPGASAVNGISDDMV 74

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARRL 106
             KP I+ ++P    + G +  VAHNA FD + L             G  + ++ +AR++
Sbjct: 75  KGKPLIDTILPAFAEFCGEDVLVAHNAPFDSQFLIADIKKHETTAPRGVILDSLPIARKV 134

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ-----M 161
           +PG+    +       +     P  + HRA  D      +   +M       +      +
Sbjct: 135 FPGLPNYKLGTL----VQHLKIPTSNFHRAEEDATYLGHMFSQMMKRISIGGQAPQVGNL 190

Query: 162 ADITGRPSL 170
             +TG+P L
Sbjct: 191 IALTGKPEL 199


>UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales
           RepID=A5KMD9_9FIRM
          Length = 279

 Score =  165 bits (420), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 77/220 (35%), Gaps = 30/220 (13%)

Query: 2   LRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+EI ++ V DGK+       ++P   ISP    +  I+  MV
Sbjct: 39  YIAFDLETTGLDPMNNEIIEIGALKVRDGKVSERFMEFIKPQELISPAITGLTGISNDMV 98

Query: 59  ADKPWIEDVIPHYYG---SEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
           A       VI  +      +  + HN  FD                   I T+K+A+++ 
Sbjct: 99  ASARPARSVITDFIDFCEEDILIGHNIIFDYSFTKCTAAREGLPFEKMGIDTLKIAKKVH 158

Query: 108 PGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P ++  S  AL +  K+  +       HRA +D   TA L   + +       +    + 
Sbjct: 159 PELESKSLSALCEHYKIENKA-----AHRAYFDALATAKLYQTLSHYFEPDNPKTFKPSQ 213

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMS 206
                       Y+ +       +    L  L  N  + S
Sbjct: 214 LT----------YKIRKPQPATPKQLALLERLTKNKKTFS 243


>UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4RQP7_9ACTO
          Length = 286

 Score =  165 bits (419), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      IVEIA V +  G++V+  + LV P R   P    +H IT  M+
Sbjct: 37  FVVVDVETTGLSSTSDRIVEIALVRIEGGRVVDEWATLVDPGR--DPDPTFVHHITAEML 94

Query: 59  ADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARRL 106
           +  P   DV             VAHNA F+   + +          P   +CT++LAR++
Sbjct: 95  SGAPTFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAPLPAVCTLRLARQV 154

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL 147
                +  ++      + +        H AL D   TA LL
Sbjct: 155 LAAPNFQLVSCCTVYGIELH-----DAHTALGDTRATAQLL 190


>UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28
           Tax=Streptococcus RepID=Q04L99_STRP2
          Length = 816

 Score =  165 bits (419), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)

Query: 2   LRIIDTE--TCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             ++D E  + G +  I+++  V + DG+IV+  +  V P  P+      +  +T+  +A
Sbjct: 8   YVVVDLEATSTGSKAKIIQVGIVVIEDGEIVDHYTTDVNPHEPLDAHIKELTGLTDQRLA 67

Query: 60  DKPWIEDVIP---HYYGSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLWP 108
             P    V            +VAHN  FD  +L         E+    + T++LA+  +P
Sbjct: 68  QAPDFSQVARKIFDLVEDGIFVAHNVQFDANLLAENLFFEGYELRNPRVDTVELAQVFFP 127

Query: 109 GI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD 163
            + KYS   L +   +     P  H H AL D   TA LL+ +        + + +
Sbjct: 128 ELEKYSLPILCRELGI-----PLKHAHTALSDAQATAELLLFLREKMAQLPKGLLE 178


>UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5
           Tax=Leuconostocaceae RepID=Q04F80_OENOB
          Length = 1437

 Score =  165 bits (419), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 23/216 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      I+++++V + +G +++     + P  P+S Q + +  IT+ +V
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNGVVLDTFDQFINPGFPLSEQTINLTGITDDLV 469

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNA-SFDRRV---------LPEMPGEWICTMKLARR 105
            +     +V+     +Y       HN   FD            LP++    I T+ LAR 
Sbjct: 470 KNSKPEAEVLKMFQQFYARTILAGHNVIKFDYGFVNHALAVHKLPKINTLVIDTLNLARW 529

Query: 106 LWPGI-KYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADI 164
           L+P   +Y+   L K   +N++     HHHRA+ D   T  LL   +  +      + D 
Sbjct: 530 LYPNFGRYTLDFLSKKFSVNLE-----HHHRAIDDSTATGMLLHIFLKEAEENYGVVYDE 584

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
                     ++ + R   +S + +   G L+ L+ 
Sbjct: 585 QLNEHTDDHESWRQTRPTHLSILVKNQTG-LKNLYK 619


>UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii
           MLHE-1 RepID=Q0A6Z2_ALHEH
          Length = 714

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 47/204 (23%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKIV--NPMSHLVRPDRPISPQAMAIHRITE 55
             + D E  GL       I+ IA V V++G+++       ++ P RPI P ++  H IT+
Sbjct: 509 FVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINPGRPIPPGSVRFHGITD 568

Query: 56  AMVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLP--------EMPGEWI------- 97
             V DKP IE V+P    + G    VAHNA+FD + +               +       
Sbjct: 569 DDVQDKPPIEVVLPQFKSFVGDAVLVAHNAAFDMKFISMKEREAGVRFDNPVLDTLLLSA 628

Query: 98  ----CTMKLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT 153
                             +S  AL     + +        H AL D   TA LL+ I+  
Sbjct: 629 LLDGD----------EEDHSLDALCDRYGIAITG-----RHTALGDTLATAELLVRIIER 673

Query: 154 SG----WTAEQMADITGRPSLMTT 173
                  T  ++   +   + +  
Sbjct: 674 LEAQGYQTFGEVMKASRMAAELRH 697


>UniRef50_C6MPJ2 Putative PAS/PAC sensor protein n=1 Tax=Geobacter sp. M18
           RepID=C6MPJ2_9DELT
          Length = 835

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 25/182 (13%)

Query: 2   LRIIDTETCGLQ----GGIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITE 55
             + DTET GLQ      +V I++V +  GK+   +    LV P R I  ++ A HRI +
Sbjct: 641 YVVFDTETTGLQISQGDKVVSISAVRIRRGKVQNADIFHTLVNPGRHIPAESTAFHRIED 700

Query: 56  AMVADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEM---------PGEWICTMKLA 103
            MVAD P + +V P +    G    VAHNA+FD++ L                + T+ L+
Sbjct: 701 HMVADAPSMNEVYPQFVKYAGDAVLVAHNAAFDKKCLDMAAAEAGLPLVENPILDTLFLS 760

Query: 104 RRLWPGIK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS-GWTAEQM 161
             L  G + +S  A+ +   + ++       H +L D   TA + + +++   G     +
Sbjct: 761 VGLHSGTEGHSLDAMAQRMGIAIEG-----RHTSLGDARATAQIFLGLLSLLPGRGVRTL 815

Query: 162 AD 163
           A+
Sbjct: 816 AE 817


>UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile
           RepID=Q6KIN3_MYCMO
          Length = 1433

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 24/218 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             + D ET GL      I+E  +  +++GK+++ +   V+P++ IS +   I  I    V
Sbjct: 400 YVVFDLETTGLSPIFDDIIEFGAQKILNGKVIDTLQFFVKPNKEISEKITLITGIKNQDV 459

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRL 106
            +    ++ +     + G    VAHNA+FD   + E   ++         I T+ +++ +
Sbjct: 460 ENAISEKEALKKILEFMGDHTVVAHNATFDMNFINEKIEKYNFQESNLQIIDTLVVSKII 519

Query: 107 WPGIKY-SNMALYKTRKLNVQTPPGLHHHRALYDCYITAALL-IDIMNTSGWTAEQMADI 164
            P  K  S   L     +          HRA YD  + A +  + I   S    +   DI
Sbjct: 520 EPEAKKFSLENLASRSGIIYN---STEAHRADYDADVLAKVWNLYIQKLSDMNVKYFDDI 576

Query: 165 TGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNL 202
                  +   + K R   ++ +A+   G L+ LF  +
Sbjct: 577 YN---FKSNIIYEKTRPFEITILAKNQSG-LKELFQKI 610


>UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0P1Y1_9CLOT
          Length = 235

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 29/213 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
               D ET GL      I+EI +V + DGKI    + ++ P+  +S   + +  I+  M+
Sbjct: 4   YVAFDLETTGLSPDSDQIIEIGAVKIRDGKISGKYNCIIHPEIEVSDFIINLTGISRDML 63

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLP--------EMPGEWICTMKLARRLW 107
                +++ +  +    G    + HN  FD + +               + T+K+AR+L 
Sbjct: 64  RKGIPLKEGVEEFLEFSGDLPILGHNVMFDYKFMKMAAASFKYPFEKTGVDTLKVARKLL 123

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
            G++   +                  HRA  D   TA +   +      T E++      
Sbjct: 124 TGLENKKLETLCAHY----HYVNQAAHRAYDDALATAVVFEQMKKEFP-TEEEIFQ---- 174

Query: 168 PSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN 200
                   F   + +  +    +   YL  L  
Sbjct: 175 ---PQQLQFKVKKERPAT---AKQKKYLENLMK 201


>UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein
           n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB
          Length = 484

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVN--PMSHLVRPDRPISPQAMAIHRITEA 56
             + DTET GL   +  IV+I +V V++G+++    ++ LV P RPI   +  +H ++ A
Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGRPIPEASTRVHGVSTA 336

Query: 57  MVADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARR 105
           MV   P I +       +      VAHNA FD   L               + T+ L+  
Sbjct: 337 MVQGAPDIAEAAAEFHLFATDAVIVAHNAPFDMAFLRRHAKASGLAWDHPILDTVLLSAV 396

Query: 106 LW-PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSG-WTAEQMAD 163
           L+   + ++  AL +   + +   P    H AL D   TA  L+ ++          +  
Sbjct: 397 LFGASVPHTLDALCERLDITI---PPALRHTALGDAQATACALVQMIPMLQARGFNSLLQ 453

Query: 164 ITGRPSLMTTF 174
           +  +       
Sbjct: 454 VIEQTQRHGRL 464


>UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella
           RepID=D1PV56_9BACT
          Length = 287

 Score =  164 bits (417), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 94/273 (34%), Gaps = 61/273 (22%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L I D ET GL      I++I+ + V         S  V P++PI P    +  IT+ MV
Sbjct: 9   LIIFDLETTGLDLATDRIIQISYIKVDPQGNEERKSLFVNPEKPIPPFVQELTHITDDMV 68

Query: 59  ADKPWIEDV---IPHYYGSEWYVAHNA-SFDRRVLPEMPGEWI-------CTMKLARRLW 107
            D P  + +   +   +    +   N+  FD  +L E             C +  A+ ++
Sbjct: 69  KDAPTFKQIAKSLQETFAGCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQRCRLIDAQNIF 128

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNT-------------- 153
             ++  N+A         +       HRA  D   T  +L   ++               
Sbjct: 129 HKMEPRNLAAAYRFYTGNKMEDDFQAHRADEDTEATYRVLQGQLDKYNPENPADPEKTLA 188

Query: 154 ---------------------------SGWTAEQMADITGRPSLMTTFTFGKYRGKAVSD 186
                                           + + D  G+P L   F F KY+G AV+D
Sbjct: 189 NDMDVLAEFSTMSNNVDFAGRIVWQEMKDGDGKTLLDSHGKPRLHEVFNFSKYKGWAVAD 248

Query: 187 VAERDPGYLRWLFNNLDSMSPELRLTLKHYLEN 219
           V  RDPG+  W+      +S +  L  K  L  
Sbjct: 249 VVHRDPGFCNWI------LSSDFPLNTKQVLTR 275


>UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum
           NCIMB 41171 RepID=UPI00019768DE
          Length = 180

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G+      I+E  +V V+D K V+    LV P R ++P    +  IT  M+
Sbjct: 11  YVVLDLETTGVSWYRDTIIEFGAVKVVDRKPVDTYQQLVNPMRNLNPFITQLTGITPDML 70

Query: 59  ADKPWIEDVIPHYY---GSEWYVAHNA-SFDRRVLP---------EMPGEWICTMKLARR 105
              P ++ V+P +    G +  + HN   FD + +           +P   I T++++R 
Sbjct: 71  EPAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAVPNRIIDTLQMSRS 130

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           ++P      +  L +   +       +  HRAL D   T      + +    
Sbjct: 131 MYPQYNRHRLVDLIQRFDIA-----DVEEHRALSDAEQTQMCFEYMRDEQRR 177


>UniRef50_C5CIX0 DNA polymerase III, epsilon subunit n=1 Tax=Kosmotoga olearia TBF
           19.5.1 RepID=C5CIX0_KOSOT
          Length = 185

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 1   MLRIIDTETCGLQ----GGIVEIASVDVIDGKI-VN-PMSHLVRPDRPISPQAMAIHRIT 54
           +  +IDTET G        I+EIA++ +  GK+ V+     LV P   I      IH + 
Sbjct: 4   VYVVIDTETTGPSPLRGDRIIEIAAIPIYRGKMFVDLAFHSLVNPQIRIPAYISGIHGLK 63

Query: 55  EAMVADKPWIEDVIPHY---YGSEWYVAHNASFDRRVLP---------EMPGEWICTMKL 102
              V  +P I DV P +    G+   V H+   D +             +  ++I T+K+
Sbjct: 64  NEDVTSEPTISDVFPRFKEYLGNAIIVGHSIEVDMKFFDIACKEIGTFPLSNQYIDTLKI 123

Query: 103 ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW 156
           A+ L+    YS   L K  K+          HRAL D  +T  + + ++   G 
Sbjct: 124 AKDLFKEGSYSLAELAKRLKIK-----DAPTHRALDDARVTGKVFLAMVKKLGG 172


>UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria
           RepID=B1I276_DESAP
          Length = 921

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET GL      IVE+  V V DGK       LVRP RP+  +  ++  + +A +
Sbjct: 5   FVVLDLETTGLDPQADEIVEVGLVRVEDGKPGAVFHALVRPSRPLPARIKSLTGLDDADL 64

Query: 59  ADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPG----EWICTMKLARRLWPGIK 111
           A++P   +V P    + G+E  V H+  FD   L    G    +   T+ LAR + PG+ 
Sbjct: 65  AERPDWSEVRPAVTAFLGNEPVVGHHVHFDLAFLERHAGYRATQAYDTVDLARLVLPGLP 124

Query: 112 YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTS 154
              + L           P    HRA+ D    A L   ++   
Sbjct: 125 SYRLELLCAH----LDLPERPGHRAMEDARAAAGLFTALLERF 163


>UniRef50_A8V2X6 DNA polymerase III, alpha subunit n=1 Tax=Hydrogenivirga sp.
           128-5-R1-1 RepID=A8V2X6_9AQUI
          Length = 206

 Score =  164 bits (415), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-ISPQAMAIHRITEAM 57
             IID ET GL      ++E+A++    G I++ + HL +P    I  + + +  IT AM
Sbjct: 12  FVIIDLETTGLSASNNSVIEVAAIKYQSGMIIDQLHHLTKPRENFIPSKVINLTGITNAM 71

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V DKP+ ED+ P    +      VAHNA FD   L           +   +ICT  LARR
Sbjct: 72  VIDKPYFEDIYPEVYNFLKDSIVVAHNAKFDISFLSEVHKIVFKNNLRLHYICTDNLARR 131

Query: 106 LWPG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           ++P   K S  +L     +N +       HRAL D   T      ++ 
Sbjct: 132 IFPEIQKKSLSSLTNYLGINFKQK-----HRALSDAQATLQAFQTMLE 174


>UniRef50_A7GZ66 Nickel transport permease component NikD n=5 Tax=Campylobacter
           RepID=A7GZ66_CAMC5
          Length = 273

 Score =  164 bits (415), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 21/191 (10%)

Query: 2   LRIIDTETCG--LQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
             I+D ET G    G I+EI ++ + +G  +      V     +      +  I+++ + 
Sbjct: 76  FCIVDIETSGGITSGQIIEIGALKIKNGVEIGRFESFVDAPF-VPENITQLTGISQSDLT 134

Query: 60  DKPWIEDVIPHY---YGSEWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLW 107
             P ++ V+  +    G+  +VAHN +FD   + +         +    +CT+ L+RR  
Sbjct: 135 GAPSLKSVLERFKIFLGTSVFVAHNVNFDYGFISQSLSNIGLGMLLNRKLCTIDLSRRTI 194

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
              KY   +L +   +N        HHRAL D      +L   ++   ++ + + D+   
Sbjct: 195 ASQKYGLGSLKELLGINNT------HHRALNDAIAATEILKICISRLPFSIQSVEDLINF 248

Query: 168 PSLMTTFTFGK 178
                +     
Sbjct: 249 SKTAPSMKLKP 259


>UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus
           fermentans DSM 20731 RepID=D2RJV7_ACIFE
          Length = 223

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRP-----ISPQAMAIHRI 53
             ++D ET GL      I+EI +++V  GK     S L++P  P     +SP    +  I
Sbjct: 25  YVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRTPLEGQYVSPFITRLTGI 84

Query: 54  TEAMVADKPWIEDVIP---HYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMK 101
           T  M+A  P     +     + GS   V +N  FD   L           +  +W+  + 
Sbjct: 85  TNEMLAAAPQPRQALEAFGKFLGSRVAVGYNVGFDMGFLQQQFQDQLYRPLANDWVDVLP 144

Query: 102 LARRLWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
           +A+ L+P   +  +  L     +  +       HRAL D   T      +   +G     
Sbjct: 145 MAQTLFPLWDHHRLNNLAAWYHVENK-----EAHRALSDVETTETCFRKLKEDAGRQYPS 199

Query: 161 MADITGRPS 169
           + D   +  
Sbjct: 200 LEDFLEKVR 208


>UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME
          Length = 234

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)

Query: 3   RIIDTETCGLQ---GGIVEIASVDVIDGKIVNP-MSHLVRP-DRPISPQAMAIHRITEAM 57
            + DTET GL+     ++EI  V++++           + P  R + P A+A+H I+   
Sbjct: 4   IVFDTETTGLERLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDALAVHGISNEQ 63

Query: 58  VADKPWIEDVIPHYY---GSEWYVAHNASFDRRVLPEMPGE----------WICTMKLAR 104
           + DKP   +++  +         VAHNA FD   +                 + T+ LAR
Sbjct: 64  LLDKPVFAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEHIVDTLALAR 123

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           R  P    S  AL K   ++         H AL D  I A + I+++
Sbjct: 124 RKHPIGPNSLDALCKRYGIDNSHRTL---HGALLDAQILAEVYIELI 167


>UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium
           RepID=C8W8J2_ATOPD
          Length = 978

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + ++DTET GL      ++EI++  +   +I+      V P  PI  +   +  IT+  V
Sbjct: 19  IVVLDTETTGLSFKKCSLIEISAAKLSGREIIERFQTFVDPGCPIPEEITTLTSITDEDV 78

Query: 59  ADKPWIED---VIPHYYGSEWYVAHNASFDRRVLPEMPG------EWICTMKLARRLWPG 109
              P  ++    +  + G    +AHNA+FDR  +  +PG       WI T+ L+R   P 
Sbjct: 79  KGAPSAKEAVAALAEFVGGLPVLAHNATFDRTFIERVPGGTSVSDTWIDTLSLSRIALPR 138

Query: 110 IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           +    ++      +          HRA  D      +   ++
Sbjct: 139 LSSHKLS-----SMAEAFGTMKVTHRASDDVDALCGMWRILL 175


>UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria
           RepID=C8WX41_ALIAD
          Length = 952

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)

Query: 3   RIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVA 59
            I+D ET GL      I+EI ++ V  G+IV+    LVRP+RPI  +   +  +++A VA
Sbjct: 4   IIVDLETTGLDPERAEILEIGALRVRGGEIVDTFHTLVRPERPIPDEITRLTGLSDADVA 63

Query: 60  DKPWIEDVIPH---YYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRLW 107
             P   + +     + G      H+  F+R           LP  PG+ +CT+ LAR L 
Sbjct: 64  GAPSEREALMRFAGFAGHTPMAGHHWVFERSFLLHRVARYGLPLQPGDGLCTLSLARILA 123

Query: 108 PGIKYSNMA-LYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD-IT 165
           P +    +  L +  +L  +       HRAL D      LL+ +   +      + + + 
Sbjct: 124 PRLMSHRLEYLARRLRLRAEVS-----HRALADARTAHQLLMRLEEKARRLPSGVIELLA 178

Query: 166 GRPSLMTTFTFG-------KYRGKAVSDVAERDPGY 194
           G   L +  T G       ++       + ER   Y
Sbjct: 179 GLAGLYSPLTAGWFEQVLSRHEEHQGPPLEERQGLY 214


>UniRef50_Q4L7K7 Similar to DNA polymerase III n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L7K7_STAHJ
          Length = 219

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 19/179 (10%)

Query: 2   LRIIDTETC-GLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              +D ET  G +  I  +  V V++ +IV     LV P    S   + +H IT   V D
Sbjct: 41  FIALDFETANGKRTSICSVGMVKVVNNEIVESFYTLVNPFDYFSQTNIEVHGITPEDVID 100

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGE---------WICTMKLARRLWP 108
            P  E V P    +      VAHNA+FD  VL +   +         + C+ +LA+R   
Sbjct: 101 APSFEYVFPYMMQFIDKLPVVAHNAAFDMNVLHQSLKQLNIETPSMIYFCSYQLAKRTID 160

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGR 167
             +Y    L K  KL+        HH AL D    A +   ++       + M  I G+
Sbjct: 161 AYRYGLKHLMKHYKLDFHG-----HHDALNDAKACAMITFRLLKHY-DNLQSMLQIYGK 213


>UniRef50_C4GLS9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147
           RepID=C4GLS9_9NEIS
          Length = 464

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 23/199 (11%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           + I+D ET G       I E+A +    GKI      LV+P+ PIS     +  I++ M+
Sbjct: 24  VVILDLETTGGHFYADRITELAFLHFWQGKITAV-QQLVQPNMPISGFVRDLTGISDEML 82

Query: 59  ADKPWIEDVIPH---YYGSEWYVAHNASFDRRVLPEMPGE--------WICTMKLARRLW 107
             +P      P           +AHN+ FD   L               +C+++L+R+L+
Sbjct: 83  QGQPTFAQFAPQVLPLLRGSLLIAHNSRFDYTFLRHECRRNGFAFATAGLCSVQLSRKLY 142

Query: 108 PG-IKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTA--EQMADI 164
           P   K++  ++ +   L V +      HRA+ D    A  L   +   G     + M  +
Sbjct: 143 PEFFKHNLDSIIERHGLAVAS-----RHRAMSDVLAVAEYLQLALREKGAPLLGQLMRQL 197

Query: 165 TGRPSLMTTFTFGKYRGKA 183
              P L      G ++  +
Sbjct: 198 ANPPMLPANLPAGVFQAAS 216


>UniRef50_Q16CY8 DNA polymerase III, epsilon subunit n=2 Tax=Roseobacter
           RepID=Q16CY8_ROSDO
          Length = 228

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 21/167 (12%)

Query: 3   RIIDTETCGLQ----GGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G        IVEI +V+++            + P+R +  +A  +H + +  
Sbjct: 4   IVLDTETTGFDPESGDRIVEIGAVELMGHVATGRTYHQYINPERSMPEEAFQVHGLGDDF 63

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG----------EWICTMKLAR 104
           + DKP   +V      + G    V HNA+FD + L    G          + I T+ +AR
Sbjct: 64  LRDKPKFAEVGQAFLDFIGDAKLVIHNAAFDIKFLNAELGWINLPKIPWEQAIDTLDIAR 123

Query: 105 RLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM 151
           + +PG   S  AL +   ++  +      H AL D  I A + ++++
Sbjct: 124 KRFPGSPASLDALCRRFGIDNTSRTL---HGALLDSEILAEVYLELI 167


>UniRef50_Q8CUQ0 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8CUQ0_OCEIH
          Length = 195

 Score =  163 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 19/176 (10%)

Query: 2   LRIIDTETCGLQ-GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
              ID ET   +      +  V + D +I++    L+ P        + IH ITE  V +
Sbjct: 4   FAAIDFETANEKRNSACSVGVVIMNDTEIIDEFYTLINPLASFRSGNVFIHGITEEQVQE 63

Query: 61  KPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEMPGEW---------ICTMKLARRLWP 108
            P   ++ P    Y      +AHNASFD  VL +   ++         +CT+K++R +WP
Sbjct: 64  APTFAELWPTLSAYLEDTILIAHNASFDMSVLRQSLNKYDIPCPNYTSLCTVKISRLIWP 123

Query: 109 GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163
            ++   +       +       L+HH A+ D   +A + +  +      T E+  +
Sbjct: 124 QLENHKL-----HTVANHHGIALNHHHAMDDARASAKIFLASLAEQKIGTTEEFIE 174


>UniRef50_Q2S2L6 Exonuclease family n=2 Tax=Salinibacter ruber DSM 13855
           RepID=Q2S2L6_SALRD
          Length = 538

 Score =  163 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 26/199 (13%)

Query: 18  EIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YYGS 74
           EI +V V DG +V+    LV P + +  +   +  IT  MV + P  ++V+P    + G 
Sbjct: 2   EIGAVKVRDGSVVDRFQQLVNPQQSVPGRITKMTGITTGMVFEAPPADEVLPDYRAFLGD 61

Query: 75  EWYVAHNASFDRRVLPE---------MPGEWICTMKLARRLWPGIKYSNMA-LYKTRKLN 124
              VAHN SFD   L           +P E +CT++LARRL PG+    ++ L +   ++
Sbjct: 62  GILVAHNVSFDGSFLDAELQRMGDETLPNETLCTVRLARRLLPGLDSKGLSRLAQFYDID 121

Query: 125 VQTPPGLHHHRALYDCYITAALLIDIM-----NTSGWTAEQMADITGRPSLMTTFTFG-- 177
           V+       HRAL D   T+ +L   +          T E +     +         G  
Sbjct: 122 VEG-----RHRALGDAEATSVVLRRFVSQLAFEHEVETVEALLRFQHQSYQTVREVPGHI 176

Query: 178 -KYRGKAVSDVAERDPGYL 195
              R + + DV +    Y+
Sbjct: 177 ESIRDEVLPDVPDEPGVYV 195


>UniRef50_D0L0M1 DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus
           neapolitanus c2 RepID=D0L0M1_HALNC
          Length = 481

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 89/236 (37%), Gaps = 30/236 (12%)

Query: 2   LRIIDTETCGL---QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
           L  +D ET G    +  I EI  V +      +  S L+ P   I  +   +  IT  MV
Sbjct: 21  LACLDIETTGSHTERDRITEIGIVTLHPDGTQSNWSCLIHPGCAIPARITTLTGITNEMV 80

Query: 59  ADKPWI---EDVIPHYYGSEWYVAHNASFDRRVLPE--------MPGEWICTMKLARRLW 107
           AD+P        +     +   +AHNA FD   L +             +C++KL+R+++
Sbjct: 81  ADQPVFAHRAQALLERLENHIVIAHNARFDLGFLKQAFRREGIRFNPSVLCSVKLSRQMF 140

Query: 108 PGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P  +     ++ +   L+         HRAL D  + A  +  +  T    AE++     
Sbjct: 141 PAERRHNLDSVMQRMGLSCAA-----RHRALGDAAVVADFITTLACTR---AEELLAACR 192

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTL---KHYLEN 219
                 +        + + ++ +    YL +      ++   +  ++   +  L++
Sbjct: 193 AQRQRPSLPPHLAPER-IDEIPDTPGVYLMY---GDGALPLYIGKSIHLRRRVLDH 244


>UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma
           RepID=Q600A7_MYCH2
          Length = 1469

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 21/210 (10%)

Query: 2   LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             I D ET GL      IVE  +V + +G  +      ++P   I P    I  I++ M+
Sbjct: 411 FVIFDLETTGLSAFYNEIVEFGAVVLQNGIEIEKHQFFIKPTGKIPPAITKITGISQKMI 470

Query: 59  -ADKPWIE---DVIPHYYGSEWYVAHNASFDRRVLPEM---------PGEWICTMKLARR 105
                  E   + I         VAHNA+FD   L +              I T++++R 
Sbjct: 471 DETAISWEIALEKITKIIKDSVLVAHNAAFDFSFLEQFFRQKAKKSLKNPIIDTLEVSRF 530

Query: 106 LWPGIKYS-NMALYKTRKLNVQTPPGLHHHRALYDCYITAALLID-IMNTSGWTAEQMAD 163
           L P  K      + K  ++          HRA YD  I   +  + +          +  
Sbjct: 531 LNPNEKSHSLKNVAKRYEIEYDEEI---AHRADYDAKILTTIWKNFLAELKSQNINDLTS 587

Query: 164 ITGRPSLMTTFTFGKYRGKAVSDVAERDPG 193
           ++   + +      K   K ++ +A+   G
Sbjct: 588 LSEIKNSIFELRPEKVFPKQLTIIAKNQIG 617


>UniRef50_Q48KX3 DNA polymerase III, epsilon subunit n=35 Tax=Proteobacteria
           RepID=Q48KX3_PSE14
          Length = 259

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 30/228 (13%)

Query: 3   RIIDTETCGL----QGGIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEAM 57
            ++DTET G+       I+EI  V++I  ++        ++PDR     A+ +H IT   
Sbjct: 11  IVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITNEF 70

Query: 58  VADKPWIEDVIP---HYYGSEWYVAHNASFDRRVLPEM--------------PGEWICTM 100
           +  KP   +V      +      + HNA+FD   +                     + T+
Sbjct: 71  LVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCSILDTL 130

Query: 101 KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ 160
            +AR   PG + S  AL K   ++         H AL D  I A + + +  T G T+  
Sbjct: 131 MMARERHPGQRNSLDALCKRYGVDNSGREL---HGALLDSEILADVYLAM--TGGQTSLS 185

Query: 161 MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPE 208
           +A      +     +    RG  +  +        R +  +   ++  
Sbjct: 186 LAGNASDGNGSGEGSGN--RGSEIRRLPADRKP-CRIIRASESELAEH 230


>UniRef50_A6Q1S7 DNA polymerase III, epsilon subunit n=2 Tax=Epsilonproteobacteria
           RepID=A6Q1S7_NITSB
          Length = 276

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 21/206 (10%)

Query: 2   LRIIDTETCGLQGG---IVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMV 58
             ++D ET G +     ++EI ++      I++     +  +  +      +  I +  +
Sbjct: 70  FVVVDIETNGSKPEFSQVIEIGAIKFKGNTIIDRFESFIYAE-DVPEYISKLTGILQEDL 128

Query: 59  ADKPWIEDVI---PHYYGSEWYVAHNASFDRRV---------LPEMPGEWICTMKLARRL 106
            + P  ++V+     +     +VAHN  FD            L ++    +C++ LAR+ 
Sbjct: 129 ENAPSQKEVLLSFKEFLQDAVFVAHNVRFDYNFISSKLEQLGLEKLANRKLCSIDLARKT 188

Query: 107 WPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
               +Y    L +T  +N         HRA  D      +L           +   D+  
Sbjct: 189 IESERYGLEFLNETLGINTAVS-----HRAYADALTAYKILQMSFEKLPNEVKSTEDLIK 243

Query: 167 RPSLMTTFTFGKYRGKAVSDVAERDP 192
                      K    + S + + DP
Sbjct: 244 FSKSAKRKKVKKTTKLSESTLPQADP 269


>UniRef50_C2L049 DNA-directed DNA polymerase III n=4 Tax=Bacteria RepID=C2L049_9FIRM
          Length = 178

 Score =  162 bits (412), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 21/179 (11%)

Query: 2   LRIIDTETCGL-QGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD 60
             + D ET       I  I    V +GKI      LV P+       + +  I++A V D
Sbjct: 4   FIVFDVETPNRKNNRISAIGITVVEEGKISKEFYSLVNPETNFDYFNVKLTGISKASVKD 63

Query: 61  KPWIEDVIPH---YYGSEWYVAHNASFDRRVLP----------EMPGEWICTMKLARRLW 107
            P   ++       +     VAHNASFD  VL           +    ++CT+K+ R L+
Sbjct: 64  APTFPELWQQIEPLFSDGMLVAHNASFDMNVLKNCLLDYEIDWKPYARYLCTVKMGRSLF 123

Query: 108 PGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG 166
           P   +    + +   +++       HHRA  D +  A +L+  +  +G   +       
Sbjct: 124 PDRSHKLNMVCEDFGISL------QHHRADSDSHACAEILLRYLE-AGAEVKDFIRTCS 175


>UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria
           RepID=Q0AE35_NITEC
          Length = 234

 Score =  162 bits (412), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 23/169 (13%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNP-MSHLVRPDRPISPQAMAIHRITEA 56
              +DTET GL       IVEIA+V+V + +         + P R     A+ +H ++  
Sbjct: 3   YVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSRE 62

Query: 57  MVADKPWIEDV---IPHYYGSEWYVAHNASFDRRVLPEMPG------------EWICTMK 101
            + DKP  +++      +      + HNA FD   +    G            + + T+ 
Sbjct: 63  FLQDKPAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQIVDTLM 122

Query: 102 LARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI 150
           LA+ L PG + +  AL +  +++         H AL D  + A + + +
Sbjct: 123 LAKELHPGKRNNLDALCERYQIDNAHRTL---HGALLDAELLAEVYLAM 168


>UniRef50_B4U7J6 DNA polymerase III, epsilon subunit n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U7J6_HYDS0
          Length = 196

 Score =  162 bits (412), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 21/168 (12%)

Query: 1   MLRIIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
           +  ++D ET GL      I+EI +  V   +I      L+ P   I  +   I  IT AM
Sbjct: 11  IYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRITEITGITNAM 70

Query: 58  VADKPWIEDVIPH---YYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           +  +P +E +I     +      V HN  FD   L          ++    ICT++L+++
Sbjct: 71  LVGQPKVEGIIYDFDNFVKDYIIVGHNVKFDLSFLSKAYSIYLHKKLNSPNICTLELSKK 130

Query: 106 LWPGIKYSNM-ALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMN 152
           L P +K   + A+     +  +       HRA  D  +T  +   +M+
Sbjct: 131 LIPNLKSYKLSAVADYFNIKYERL-----HRAKDDALLTYNIFNKLMD 173


>UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1
           Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO
          Length = 968

 Score =  162 bits (411), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 2   LRIIDTETCGLQG----GIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAM 57
             ++D E  G        +++ + V     KIVN  S L+ P R I      +  IT+  
Sbjct: 40  YAVVDLEMTGTNPNGSERLIQFSCVFTEGNKIVNTFSTLINPLRKIPEDVQNLTNITDKD 99

Query: 58  VADKPWIEDV---IPHYYGSEWYVAHNASFDRRVL---------PEMPGEWICTMKLARR 105
           V   P  ++V   I        +VAHN   D R L         P++  E I T++LA+ 
Sbjct: 100 VKSAPTFDEVAGTIYALLSDTVFVAHNIELDYRFLNSEFERIGFPKLDLEGIDTVQLAQI 159

Query: 106 LWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAE 159
            +P +    +                H H A  D ++TA L I +        E
Sbjct: 160 AFPTLASYRLGDLAHF----LGFKHKHPHHADSDAFVTAELFILLQKKLASMPE 209


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.316    0.178    0.584 

Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,682,410,655
Number of Sequences: 3077464
Number of extensions: 91934143
Number of successful extensions: 211463
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 2112
Number of HSP's that attempted gapping in prelim test: 201028
Number of HSP's gapped (non-prelim): 3900
length of query: 220
length of database: 1,040,396,356
effective HSP length: 124
effective length of query: 96
effective length of database: 658,790,820
effective search space: 63243918720
effective search space used: 63243918720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 91 (39.3 bits)
