Phyre 2 alignment of P0AEK0 with c1lj2B_

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Job Description | P0AEK0
Confidence | 9.35% | Date | Thu Jan 5 11:23:32 GMT 2012
Rank | 59 | Aligned Residues | 23
% Identity | 13% | Template | c1lj2B_
PDB info | PDB header:viral protein/ translation | Chain: B: PDB Molecule:nonstructural rna-binding protein 34; | PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
Resolution | 2.38 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | R | W | L | F | N | N | L | D | S | M | S | P | E | L | R | L | T | L | K | H | Y | L | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | E | W | Y | L | R | S | M | . | E | L | D | P | E | I | K | A | D | I | E | Q | Q | I | N
Template Known Secondary structure |  |  |  |  |  |  |  | T | S | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 245 | . | . | . | . | 250 | . | . |  | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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